Beech cupules as keystone structures for soil fauna.

Science.gov (United States)

Melguizo-Ruiz, Nereida; Jiménez-Navarro, Gerardo; Moya-Laraño, Jordi

2016-01-01

Facilitative or positive interactions are ubiquitous in nature and play a fundamental role in the configuration of ecological communities. In particular, habitat modification and niche construction, in which one organism locally modifies abiotic conditions and favours other organisms by buffering the effects of adverse environmental factors, are among the most relevant facilitative interactions. In line with this, 'keystone structures', which provide resources, refuge, or advantageous services decisive for other species, may allow the coexistence of various species and thus considerably contribute to diversity maintenance. Beech cupules are woody husks harbouring beech fruits that remain in the forest soil for relatively long periods of time. In this study, we explored the potential role of these cupules in the distribution and maintenance of the soil fauna inhabiting the leaf litter layer. We experimentally manipulated cupule availability and soil moisture in the field to determine if such structures are limiting and can provide moist shelter to soil animals during drought periods, contributing to minimize desiccation risks. We measured invertebrate abundances inside relative to outside the cupules, total abundances in the leaf litter and animal body sizes, in both dry and wet experimental plots. We found that these structures are preferentially used by the most abundant groups of smaller soil animals-springtails, mites and enchytraeids-during droughts. Moreover, beech cupules can be limiting, as an increase in use was found with higher cupule densities, and are important resources for many small soil invertebrates, driving the spatial structure of the soil community and promoting higher densities in the leaf litter, probably through an increase in habitat heterogeneity. We propose that fruit woody structures should be considered 'keystone structures' that contribute to soil community maintenance. Therefore, beech trees may indirectly facilitate soil fauna

Fertilizer regime impacts on abundance and diversity of soil fauna across a poplar plantation chronosequence in coastal Eastern China.

Science.gov (United States)

Wang, Shaojun; Chen, Han Y H; Tan, Yan; Fan, Huan; Ruan, Honghua

2016-02-09

Soil fauna are critical for ecosystem function and sensitive to the changes of soil fertility. The effects of fertilization on soil fauna communities, however, remain poorly understood. We examined the effects of fertilization form and quantity on the abundance, diversity and composition of soil fauna across an age-sequence of poplar plantations (i.e., 4-, 9- and 20-yr-old) in the coastal region of eastern China. We found that the effects of fertilization on faunal abundance, diversity, and composition differed among stand ages. Organic fertilizers increased the total abundance of soil fauna, whereas low level inorganic fertilizers imparted increases only in the 4- and 9-yr-old stands. The number of faunal groups did not change with fertilization, but Shannon's and Margalef diversity indices increased under low level organic fertilization, and decreased under inorganic fertilization in the 9- and 20-yr-old stands. Community composition of soil fauna differed strongly with fertilization and stand age. The changes in soil fauna were strongly associated with the changes in microbial biomass carbon, dissolved organic carbon and nitrogen, and available phosphorus and potassium. Our findings suggest that the responses of soil fauna to fertilization may be mediated through the fertilization effects on soil nutrient availability.

[Interrelationships between soil fauna and soil environmental factors in China: research advance].

Science.gov (United States)

Wang, Yi; Wei, Wei; Yang, Xing-zhong; Chen, Li-ding; Yang, Lei

2010-09-01

Soil fauna has close relations with various environmental factors in soil ecosystem. To explore the interrelationships between soil fauna and soil environmental factors is of vital importance to deep understand the dynamics of soil ecosystem and to assess the functioning of the ecosystem. The environmental factors affecting soil fauna can be classified as soil properties and soil external environment. The former contains soil basic physical and chemical properties, soil moisture, and soil pollution. The latter includes vegetation, land use type, landform, and climate, etc. From these aspects, this paper summarized the published literatures in China on the interrelationships between soil fauna and soil environmental factors. It was considered that several problems were existed in related studies, e.g., fewer researches were made in integrating soil fauna's bio-indicator function, research methods were needed to be improved, and the studies on the multi-environmental factors and their large scale spatial-temporal variability were in deficiency. Corresponding suggestions were proposed, i.e., more work should be done according to the practical needs, advanced experiences from abroad should be referenced, and comprehensive studies on multi-environmental factors and long-term monitoring should be conducted on large scale areas.

Toward a complete soil C and N cycle: incorporating the soil fauna.

Science.gov (United States)

Osler, Graham H R; Sommerkorn, Martin

2007-07-01

Increasing pressures on ecosystems through global climate and other land-use changes require predictive models of their consequences for vital processes such as soil carbon and nitrogen cycling. These environmental changes will undoubtedly affect soil fauna. There is sufficient evidence that soil fauna have significant effects on all of the pools and fluxes in these cycles, and soil fauna mineralize more N than microbes in some habitats. It is therefore essential that their role in the C and N cycle be understood. Here we introduce a new framework that attempts to reconcile our current understanding of the role of soil fauna within the C and N cycle with biogeochemical models and soil food web models. Using a simple stoichiometric approach to integrate our understanding of N mineralization and immobilization with the C:N ratio of substrates and faunal life history characteristics, as used in food web studies, we consider two mechanisms through which soil fauna can directly affect N cycling. First, fauna that are efficient assimilators of C and that have prey with similar C:N ratios as themselves, are likely to contribute directly to the mineral N pool. Second, fauna that are inefficient assimilators of C and that have prey with higher C:N ratios than themselves are likely to contribute most to the dissolved organic matter (DOM) pool. Different groups of fauna are likely to contribute to these two pathways. Protists and bacteria-feeding nematodes are more likely to be important for N mineralization through grazing on microbial biomass, while the effects of enchytraeids and fungal-feeding microarthropods are most likely to be important for DOM production. The model is consistent with experimental evidence and, despite its simplicity, provides a new framework in which the effects of soil fauna on pools and fluxes can be understood. Further, the model highlights our gaps in knowledge, not only for effects of soil fauna on processes, but also for understanding of the

Ecological Diversity of Soil Fauna as Ecosystem Engineers in Small-Holder Cocoa Plantation in South Konawe

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Laode Muhammad Harjoni Kilowasid

2012-05-01

Full Text Available Taxa diversity within soil fauna functional groups can affected ecosystem functioning such as ecosystem engineers,which influence decomposition and nutrient cycling. The objective of this study is to describe ecological diversityvariation within soil fauna as ecosystem engineers in soil ecosystem of cocoa (Theobroma cacao L. plantation.Sampling was conducted during one year period from five different ages of plantation. Soil fauna removed from soilcore using hand sorting methods. A total of 39 genera of soil fauna as ecosystem engineers were found during thesestudies. Thirty five genera belong to the group of Formicidae (ants, three genera of Isoptera (termites, and onegenera of Oligochaeta (earthworms. Ecological diversity variation within ecosystem engineers was detected withSimpson indices for dominance and evenness. The highest diversity of ecosystem engineers was in the young ageof plantation. This study reinforces the importance biotic interaction which contributed to the distribution andabundance within soil fauna community as ecosystem engineers in small-holder cocoa plantation.

Soil fauna: key to new carbon models

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Filser, Juliane; Faber, Jack H.; Tiunov, Alexei V.; Brussaard, Lijbert; Frouz, Jan; De Deyn, Gerlinde; Uvarov, Alexei V.; Berg, Matty P.; Lavelle, Patrick; Loreau, Michel; Wall, Diana H.; Querner, Pascal; Eijsackers, Herman; José Jiménez, Juan

2016-11-01

Soil organic matter (SOM) is key to maintaining soil fertility, mitigating climate change, combatting land degradation, and conserving above- and below-ground biodiversity and associated soil processes and ecosystem services. In order to derive management options for maintaining these essential services provided by soils, policy makers depend on robust, predictive models identifying key drivers of SOM dynamics. Existing SOM models and suggested guidelines for future SOM modelling are defined mostly in terms of plant residue quality and input and microbial decomposition, overlooking the significant regulation provided by soil fauna. The fauna controls almost any aspect of organic matter turnover, foremost by regulating the activity and functional composition of soil microorganisms and their physical-chemical connectivity with soil organic matter. We demonstrate a very strong impact of soil animals on carbon turnover, increasing or decreasing it by several dozen percent, sometimes even turning C sinks into C sources or vice versa. This is demonstrated not only for earthworms and other larger invertebrates but also for smaller fauna such as Collembola. We suggest that inclusion of soil animal activities (plant residue consumption and bioturbation altering the formation, depth, hydraulic properties and physical heterogeneity of soils) can fundamentally affect the predictive outcome of SOM models. Understanding direct and indirect impacts of soil fauna on nutrient availability, carbon sequestration, greenhouse gas emissions and plant growth is key to the understanding of SOM dynamics in the context of global carbon cycling models. We argue that explicit consideration of soil fauna is essential to make realistic modelling predictions on SOM dynamics and to detect expected non-linear responses of SOM dynamics to global change. We present a decision framework, to be further developed through the activities of KEYSOM, a European COST Action, for when mechanistic SOM models

Repression of fungal plant pathogens and fungal-related contaminants: Selected ecosystem services by soil fauna communities in agroecosystems

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Meyer-Wolfarth, Friederike; Schrader, Stefan; Oldenburg, Elisabeth; Brunotte, Joachim; Weinert, Joachim

2017-04-01

In agroecosystems soil-borne fungal plant diseases are major yield-limiting factors which are difficult to control. Fungal plant pathogens, like Fusarium species, survive as a saprophyte in infected tissue like crop residues and endanger the health of the following crop by increasing the infection risk for specific plant diseases. In infected plant organs, these pathogens are able to produce mycotoxins. Mycotoxins like deoxynivalenol (DON) persist during storage, are heat resistant and of major concern for human and animal health after consumption of contaminated food and feed, respectively. Among fungivorous soil organisms, there are representatives of the soil fauna which are obviously antagonistic to a Fusarium infection and the contamination with mycotoxins. Specific members of the soil macro-, meso-, and microfauna provide a wide range of ecosystem services including the stimulation of decomposition processes which may result in the regulation of plant pathogens and the degradation of environmental contaminants. Investigations under laboratory conditions and in field were conducted to assess the functional linkage between soil faunal communities and plant pathogenic fungi (Fusarium culmorum). The aim was to examine if Fusarium biomass and the content of its mycotoxin DON decrease substantially in the presence of soil fauna (earthworms: Lumbricus terrestris, collembolans: Folsomia candida and nematodes: Aphelenchoides saprophilus) in a commercial cropping system managed with conservation tillage located in Northern Germany. The results of our investigations pointed out that the degradation performance of the introduced soil fauna must be considered as an important contribution to the biodegradation of fungal plant diseases and fungal-related contaminants. Different size classes within functional groups and the traits of keystone species appear to be significant for soil function and the provision of ecosystem services as in particular L. terrestris revealed to

Soil invertebrate fauna enhances grassland succession and diversity.

Science.gov (United States)

De Deyn, Gerlinde B; Raaijmakers, Ciska E; Zoomer, H Rik; Berg, Matty P; de Ruiter, Peter C; Verhoef, Herman A; Bezemer, T Martijn; van der Putten, Wim H

2003-04-17

One of the most important areas in ecology is to elucidate the factors that drive succession in ecosystems and thus influence the diversity of species in natural vegetation. Significant mechanisms in this process are known to be resource limitation and the effects of aboveground vertebrate herbivores. More recently, symbiotic and pathogenic soil microbes have been shown to exert a profound effect on the composition of vegetation and changes therein. However, the influence of invertebrate soil fauna on succession has so far received little attention. Here we report that invertebrate soil fauna might enhance both secondary succession and local plant species diversity. Soil fauna from a series of secondary grassland succession stages selectively suppress early successional dominant plant species, thereby enhancing the relative abundance of subordinate species and also that of species from later succession stages. Soil fauna from the mid-succession stage had the strongest effect. Our results clearly show that soil fauna strongly affects the composition of natural vegetation and we suggest that this knowledge might improve the restoration and conservation of plant species diversity.

[Microelement contents of litter, soil fauna and soil in Pinus koraiensis and broad-leaved mixed forest].

Science.gov (United States)

Yin, Xiu-qin; Li, Jin-xia; Dong, Wei-hua

2007-02-01

The analysis on the Mn, Zn and Cu contents of litter, soil fauna and soil in Pinus korazenszis and broad-leaved mixed forest in Liangshui Natural Reserve of Xiaoxing' an Mountains showed that the test microelement contents in the litter, soil fauna and soil all followed the sequence of Mn > Zn > Cu, but varied with these environmental components, being in the sequence of soil > litter > soil fauna for Mn, soil fauna > litter and soil for Zn, and soil fauna > soil > litter for Cu. The change range of test microelement contents in litter was larger in broad-leaved forest than in coniferous forest. Different soil fauna differed in their microelement-enrichment capability, e. g. , earthworm, centipede, diplopod had the highest content of Mn, Zn and Cu, respectively. The contents of test microelements in soil fauna had significant correlations with their environmental background values, litter decomposition rate, food habit of soil fauna, and its absorbing selectivity and enrichment to microelements. The microelements contained in 5-20 cm soil layer were more than those in 0-5 cm soil layer, and their dynamics differed in various soil layers.

Recent progress in ecological studies of soil fauna

NARCIS (Netherlands)

Hasegawa, Motohiro; Fujii, Saori; Kaneda, Satoshi; Ikeda, Hiroshi; Hishi, Takuo; Hyodo, Fujio; Kobayashi, Makoto

2017-01-01

Progress in ecological studies of soil fauna includes studies of the role and effects of soil fauna on decomposition and soil carbon dynamics in relation to global environmental changes, the introduction of molecular biology approaches to such studies, feeding habit analysis using stable isotopes,

Fertilizer regime impacts on abundance and diversity of soil fauna across a poplar plantation chronosequence in coastal Eastern China

OpenAIRE

Shaojun Wang; Han Y. H. Chen; Yan Tan; Huan Fan; Honghua Ruan

2016-01-01

Soil fauna are critical for ecosystem function and sensitive to the changes of soil fertility. The effects of fertilization on soil fauna communities, however, remain poorly understood. We examined the effects of fertilization form and quantity on the abundance, diversity and composition of soil fauna across an age-sequence of poplar plantations (i.e., 4-, 9- and 20-yr-old) in the coastal region of eastern China. We found that the effects of fertilization on faunal abundance, diversity, and c...

Preliminary Response of Soil Fauna to Simulated N Deposition in Three Typical Subtropical Forests

Institute of Scientific and Technical Information of China (English)

XU Guo-Liang; MO Jiang-Ming; ZHOU Guo-Yi; FU Sheng-Lei

2006-01-01

A field-scale experiment arranged in a complete randomized block design with three N addition treatments including a control (no addition of N), a low N (5 g m-2 year-1), and a medium N (10 g m-2 year-1) was performed in each of the three typical forests, a pine (Pinus massoniana Lamb.) forest (PF), a pine-broadleaf mixed forest (MF) and a mature monsoon evergreen broadleaf forest (MEBF), of the Dinghushan Biosphere Reserve in subtropical China to study the response of soil fauna community to additions of N. Higher NH4+ and NO3- concentrations and a lower soil pH occurred in the medium N treatment of MEBF, whereas the NO3- concentration was the lowest in PF after the additions of N. The response of the density, group abundance and diversity index of soil fauna to addition of N varied with the forest type,and all these variables decreased with increasing N under MEBF but the trend was opposite under PF. The N treatments had no significant effects on these variables under MF. Compared with the control plots, the medium N treatment had significant negative effect on soil fauna under MEBF. The group abundance of soil fauna increased significantly with additions of higher N rates under PF. These results suggested that the response of soil fauna to N deposition varied with the forest type and N deposition rate, and soil N status is one of the important factors affecting the response of soil fauna to N deposition.

Topography of Spoil Heaps and Its Role in Plant Succession and Soil Fauna Presence

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Walmsley A.

2017-03-01

Full Text Available The spoil heaps from brown coal mining without technical reclamation are interesting specific sites for ecological relationships observation. This research was aimed at investigating whether topographic features, which determine soil nutrient and moisture distribution, in combination with soil fauna (wireworm and earthworm presence, affect plant community composition at a spontaneously revegetated post mining area with an undulating surface. Two sites of different age with three types of topographic features were selected, soil moisture and nutrient contents were measured, and plant community composition and soil macrofauna community were sampled at each position. Wireworms were present at all positions and were most abundant at the bottoms of waves at the younger site; their presence was correlated with the presence of several plant species with high palatability for wireworms, but the direction of the interaction is not clear. Earthworms were only present at the older site and had the highest abundance at flat sections. Earthworm presence affected the amount of nitrogen in soil - the highest nitrogen content was at the site with the highest earthworm density and was followed by a higher diversity of plant community. The plant community composition was generally correlated with plant available nutrient content - especially P and N. We infer that topographic features affect nutrient and soil fauna distribution, which consequently influences the plant community composition.

Towards a methodology for removing and reconstructing soil protists with intact soil microbial communities

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Hu, Junwei; Tsegaye Gebremikael, Mesfin; Salehi Hosseini, Pezhman; De Neve, Stefaan

2017-04-01

Soil ecological theories on the role of soil fauna groups in soil functions are often tested in highly artificial conditions, i.e. on completely sterilized soils or pure quartz sand re-inoculated with a small selection of these fauna groups. Due to the variable sensitivity of different soil biota groups to gamma irradiation, the precise doses that can be administered, and the relatively small disturbance of soil physical and chemical properties (relative to e.g. autoclaving, freezing-thawing and chemical agents), gamma irradiation has been employed to selectively eliminate soil organisms. In recent research we managed to realistically estimate on the contribution of the entire nematode communities to C and N mineralization in soil, by selective removal of nematodes at 5 kGy gamma irradiation doses followed by reinoculation. However, we did not assess the population dynamics of protozoa in response to this irradiation, i.e. we could not assess the potential contribution of protists to the mineralization process. Selective removal of protists from soils with minimal disturbance of the soil microflora has never been attempted and constitutes a highly challenging but potentially groundbreaking technique in soil ecology. Accordingly, the objective of this research is to modify the successful methodology of selective elimination of nematodes, to selectively eliminate soil fauna including nematodes and protists with minimal effects on the soil microbial community and reconstruct soil protists and microbial communities in completely sterilized soil. To this end, we here compared two different approaches: 1) remove nematodes and protists while keeping the microbial community intact (through optimizing gamma irradiation doses); 2) reconstruct protists and microbial communities in sterilized soil (through adding multicellular fauna free pulverized soil). The experiment consists of 7 treatments with soil collected from 0 to 15 cm layer of an organically managed agricultural

Soil invertebrate fauna affect N2 O emissions from soil.

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Kuiper, Imke; de Deyn, Gerlinde B; Thakur, Madhav P; van Groenigen, Jan Willem

2013-09-01

Nitrous oxide (N2 O) emissions from soils contribute significantly to global warming. Mitigation of N2 O emissions is severely hampered by a lack of understanding of its main controls. Fluxes can only partly be predicted from soil abiotic factors and microbial analyses - a possible role for soil fauna has until now largely been overlooked. We studied the effect of six groups of soil invertebrate fauna and tested the hypothesis that all of them increase N2 O emissions, although to different extents. We conducted three microcosm experiments with sandy soil and hay residue. Faunal groups included in our experiments were as follows: fungal-feeding nematodes, mites, springtails, potworms, earthworms and isopods. In experiment I, involving all six faunal groups, N2 O emissions declined with earthworms and potworms from 78.4 (control) to 37.0 (earthworms) or 53.5 (potworms) mg N2 O-N m(-2) . In experiment II, with a higher soil-to-hay ratio and mites, springtails and potworms as faunal treatments, N2 O emissions increased with potworms from 51.9 (control) to 123.5 mg N2 O-N m(-2) . Experiment III studied the effect of potworm density; we found that higher densities of potworms accelerated the peak of the N2 O emissions by 5 days (P soil aeration by the soil fauna reduced N2 O emissions in experiment I, whereas in experiment II N2 O emissions were driven by increased nitrogen and carbon availability. In experiment III, higher densities of potworms accelerated nitrogen and carbon availability and N2 O emissions, but did not increase them. Overall, our data show that soil fauna can suppress, increase, delay or accelerate N2 O emissions from soil and should therefore be an integral part of future N2 O studies. © 2013 John Wiley & Sons Ltd.

Soil fauna and diversity of animals in mining landscape of Karvina region Czech Republic

International Nuclear Information System (INIS)

Pullmanova, M.

2006-01-01

To study development of edaphon, esp. animals living on the top of the soil-epigeon, in relation to natural succession, were utilized the extreme different habitats from devastated landscape of Karvina region, Czech republic. Using the method of ground traps was collected numerous biological material of epigeon fauna at the spoil heap of the Dukla and Lazy face working area, in Karvina region. During two years of the research 2002-2004 was collected about 20 thousand examples. The fauna of epigeon, top horizon of the soil, was recovered and determined 24 taxons. The samples were analyzed according to several ecological criteria like an abundance, dominance, diversity and frequency. Special interest was paid to the succession and biodiversity of flora and fauna of spoil heap the reclamation process. Plants and animals that are adapted to specific conditions of life. First results show that the succession of community of edaphon is faster then succession of community of plants. (author)

PERFUGIA AS A MECHANISM FOR THE RECOVERY OF SOIL FAUNA AFTER ECOSYSTEM DISTURBANCES

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K. B. Gongalsky

2017-12-01

Full Text Available Disturbances such as forest fires, industrial pollution, etc. are almost always heterogeneous, leaving less disturbed patches within the boundaries of disturbances. In addition to the traditionally considered source of soil invertebrates’ restoration by immigration from the surrounding unchanged biotopes, the role of locally undisturbed areas within the impact zones is shown. The presence of perfugia within the impact areas of various origin is revealed. Perfugia are locally less disturbed or undisturbed areas within a disturbed ecosystem where specimens or remnants of soil biota communities survive a disturbance. They are characterized by higher diversity and abundance of soil fauna in comparison to the main disturbed area. The heterogeneity of soil environment, the heterogeneity of its disturbance and the presence of perfugia serve as one of the factors in the recovery of soil fauna after the disturbances.

Effects of Seasonal and Perennial Grazing on Soil Fauna Community and Microbial Biomass Carbon in the Subalpine Meadows of Yunnan, Southwest China

Institute of Scientific and Technical Information of China (English)

LIU Shengjie; YANG Xiaodong; Anthony R.IVES; FENG Zhili; SHA Liqing

2017-01-01

Grazing and over-grazing may drive changes in the diversity and functioning of below-ground meadow ecosystems.A field soil survey was conducted to compare microbial biomass carbon (Cmin) and soil fauna communities in the two main grassland management systems in subalpine regions of Yunnan Province,China:perennial grazing currently practiced due to increasing herd sizes and traditional seasonal grazing.A three-year exclosure experiment was then conducted to further compare the effects of different grazing practices,including treatments of no mowing,perennial grazing (NM + G),mowing followed by seasonal grazing (M + G),mowing and no grazing (M + NG),and no mowing or grazing (NM + NG).The comparative survey result revealed that Cmin and total density of soil fauna were significantly lower at a perennially grazed site than at a seasonally grazed site.The experiment results showed that in comparison to non-grazing treatments (M + NG and NM + NG),grazing (NM + G and M + G) reduced total fauna density (by 150 individuals m-2) and the number of taxonomic groups present (by 0.32 taxa m-2).Mowing decreased Cmin (by 0.31 mg g-1).Furthermore,the NM + G treatment (perennial grazing) had the lowest density of Collembola (16.24 individuals m-2),one of the two most common taxonomic groups,although other taxonomic groups responded differently to the treatments.Treatment effects on soil fauna were consistent with those on above-ground grasses,in which C:N ratios were greatly reduced by grazing,with this effect being the greatest for the NM + G treatment.In contrast,different grazing treatments had little effect on C:N ratio of soil.Furthermore,the traditional grazing method (mowing followed by seasonal grazing) may have less severe effects on some taxonomic groups than perennial grazing.Therefore,an appropriate management should aim to protect soil fauna and microbes in this area from over-grazing and against further degradation.

Structure and function of soil fauna communities in Amazonian anthropogenic and natural ecosystems

OpenAIRE

Höfer, Hubert; Hanagarth, Werner; Garcia, Marcos; Martius, Christopher; Franklin, Elizabeth; Römbke, Jörg; Beck, Ludwig

2016-01-01

The soil biological conditions of two 5-year-old polyculture tree plantations in Amazonia were studied comparatively to a 13-year-old secondary forest and a nearby undisturbed primary forest. The polycultures had been planted to regenerate the soil degraded by land preparation and a former rubber tree monoculture. Abundance and biomass of functional groups of soil meso- and macrofauna were measured at three-months-intervals over 2 years and litterbag experiments with fauna exclusion were carr...

[Impact of heavy snow storm and freezing rain disasters on soil fauna in Chinese fir plantation in southern China].

Science.gov (United States)

Yan, Shao-kui; Zhang, Wei-dong; Liu, Yan-xin; Fu, Sheng-lei; Li, Yuan-liang; Wang, Si-long

2009-01-01

In January 2008, southern China suffered an unusual heavy snowstorm and freezing rain over a large area for almost a month long. This catastrophic event was the worst one in past 50 years, which brought the area a serious impact on the infrastructure, ecology, and environment. To understand the long-term impact of this catastrophic event on the forest ecosystems in this area, a field investigation was conducted on the soil fauna in a pure Chinese fir plantation and a mixed Chinese fir plantation-alder plantation in Huitong County of Hunan Province on March 23, 2008, the date 40 days after the heavy snowstorm and freezing rain. With the abundance and community composition as the main parameters and the monitoring data from the two plantations on March 23, 2007 as the reference, the flexibility and resistance of soil fauna to the disturbances of the catastrophic event was preliminarily evaluated. The results showed that there was a significant deviation of soil fauna communities in the two plantations from the reference. An outbreak increase in microfauna nematode abundance was found from 12216.9 ind x m(-2) to 118343.9 ind x m(-2) in pure Chinese fir plantation and from 25435.9 ind x m(-2) to 84573.0 ind x m(-2) in mixed Chinese fir plantation-alder plantation, while a 27.0% and 85.6% decrease of macrofauna abundance was found in the two plantations, respectively, compared with the reference. Mesofauna abundance also had a significant decrease in litter layer but not in soil. The abundance recovery displayed a trend from quick rate for microfauna to slow rate for macrofauna, which indicated that the soil fauna functional groups, in terms of body size, could be used as a vulnerable indicator in evaluating disturbance event and post-disturbance recovery. By using community ordinations, no shift in soil fauna community composition was detected 40 days after the catastrophic event, suggesting that the community composition of soil invertebrate had a high resistance to

Fauna-associated changes in chemical and biochemical properties of soil.

Science.gov (United States)

Tripathi, G; Sharma, B M

2006-12-01

To study the impacts of abundance of woodlice, termites, and mites on some functional aspects of soil in order to elucidate the specific role of soil fauna in improving soil fertility in desert. Fauna-rich sites were selected as experimental sites and adjacent areas were taken as control. Soil samples were collected from both sites. Soil respiration was measured at both sites. The soil samples were sent to laboratory, their chemical and biochemical properties were analyzed. Woodlice showed 25% decrease in organic carbon and organic matter as compared to control site. Whereas termites and mites showed 58% and 16% decrease in organic carbon and organic matter. In contrast, available nitrogen (nitrate and ammonical both) and phosphorus exhibited 2-fold and 1.2-fold increase, respectively. Soil respiration and dehydrogenase activity at the sites rich in woodlice, termites and mites produced 2.5-, 3.5- and 2-fold increases, respectively as compared to their control values. Fauna-associated increase in these biological parameters clearly reflected fauna-induced microbial activity in soil. Maximum decrease in organic carbon and increase in nitrate-nitrogen and ammonical-nitrogen, available phosphorus, soil respiration and dehydrogenase activity were produced by termites and minimum by mites reflecting termite as an efficient soil improver in desert environment. The soil fauna-associated changes in chemical (organic carbon, nitrate-nitrogen, ammonical-nitrogen, phosphorus) and biochemical (soil respiration, dehydrogenase activity) properties of soil improve soil health and help in conservation of desert pedoecosystem.

[Influence of different types of surface on the diversity of soil fauna in Beijing Olympic Park].

Science.gov (United States)

Song, Ying-shi; Li, Xiao-wen; Li, Feng; Li, Hai-mei

2015-04-01

Soil fauna are impacted by urbanization. In order to explore the stress of different surface covers on diversity and community structure of soil fauna, we conducted this experiment in Beijing Olympic Park. In autumn of 2013, we used Baermann and Tullgren methods to study the diversity of soil fauna in the depth of 0-5 cm, 5-10 cm, 10-15 cm under four different land covers i.e. bared field (BF), totally impervious surface (TIS), partly impervious surface (PIS) and grassland (GL). The results showed that the total number of soil fauna in 100 cm3 was in order of GL (210) > PIS (193) > TIS (183) > BF (90), and the number of nematodes accounted for 72.0%-92.8% of the total number. On the vertical level, except for the TIS, the other three types of surface soil fauna had the surface gathered phenomenon. The Shannon diversity index and the Pielou evenness index of BF were lower, but the Simpson dominance index was higher than in the other land covers. The Shannon index and Margalef richness indes of GL were higher than those of the other land covers. The Shannon indexes of TIS and PIS were between the BF and GL. Except for the TIS and GL, the similarity indexes were between 0.4-0.5, indicating moderate non-similar characteristics. The diversity of soil fauna was significantly correlated with temperature, pH and available potassium.

Soil fauna as an indicator of soil quality in forest stands, pasture and secondary forest

Directory of Open Access Journals (Sweden)

Felipe Vieira da Cunha Neto

2012-11-01

Full Text Available The interactions between soil invertebrates and environmental variations are relatively unknown in the assessment of soil quality. The objective of this study was to evaluate soil quality in areas with different soil management systems, based on soil fauna as indicator, in Além Paraíba, Minas Gerais, Brazil. The soil invertebrate community was sampled using pitfall traps, in the dry and rainy seasons, from areas with five vegetation types (acacia, mimosa, eucalyptus, pasture, and secondary forest. The abundance of organisms and the total and average richness, Shannon's diversity index, the Pielou uniformity index, and change index V were determined. The fauna was most abundant in the areas of secondary forest and mimosa plantations in the dry season (111.3 and 31.7 individuals per trap per day, respectively. In the rainy season, the abundance of organisms in the three vegetation types did not differ. The highest values of average and total richness were recorded in the secondary forest in the dry season and in the mimosa stand in the rainy season. Shannon's index ranged from 1.57 in areas with acacia and eucalyptus in the rainy season to 3.19 in the eucalyptus area in the dry season. The uniformity index was highest in forest stands (eucalyptus, acacia and mimosa in the dry season, but higher in the rainy season in the pasture and secondary forest than in the forest stands. The change index V indicated that the percentage of extremely inhibited groups was lowest in the area with mimosa, both in the dry and rainy season (36 and 23 %, respectively. Of all forest stands, the mimosa area had the most abundant soil fauna.

Transient dwarfism of soil fauna during the Paleocene-Eocene Thermal Maximum.

Science.gov (United States)

Smith, Jon J; Hasiotis, Stephen T; Kraus, Mary J; Woody, Daniel T

2009-10-20

Soil organisms, as recorded by trace fossils in paleosols of the Willwood Formation, Wyoming, show significant body-size reductions and increased abundances during the Paleocene-Eocene Thermal Maximum (PETM). Paleobotanical, paleopedologic, and oxygen isotope studies indicate high temperatures during the PETM and sharp declines in precipitation compared with late Paleocene estimates. Insect and oligochaete burrows increase in abundance during the PETM, suggesting longer periods of soil development and improved drainage conditions. Crayfish burrows and molluscan body fossils, abundant below and above the PETM interval, are significantly less abundant during the PETM, likely because of drier floodplain conditions and lower water tables. Burrow diameters of the most abundant ichnofossils are 30-46% smaller within the PETM interval. As burrow size is a proxy for body size, significant reductions in burrow diameter suggest that their tracemakers were smaller bodied. Smaller body sizes may have resulted from higher subsurface temperatures, lower soil moisture conditions, or nutritionally deficient vegetation in the high-CO(2) atmosphere inferred for the PETM. Smaller soil fauna co-occur with dwarf mammal taxa during the PETM; thus, a common forcing mechanism may have selected for small size in both above- and below-ground terrestrial communities. We predict that soil fauna have already shown reductions in size over the last 150 years of increased atmospheric CO(2) and surface temperatures or that they will exhibit this pattern over the next century. We retrodict also that soil fauna across the Permian-Triassic and Triassic-Jurassic boundary events show significant size decreases because of similar forcing mechanisms driven by rapid global warming.

Transient dwarfism of soil fauna during the Paleocene-Eocene Thermal Maximum

Science.gov (United States)

Smith, J.J.; Hasiotis, S.T.; Kraus, M.J.; Woody, D.T.

2009-01-01

Soil organisms, as recorded by trace fossils in paleosols of the Willwood Formation, Wyoming, show significant body-size reductions and increased abundances during the Paleocene-Eocene Thermal Maximum (PETM). Paleobotanical, paleopedologic, and oxygen isotope studies indicate high temperatures during the PETM and sharp declines in precipitation compared with late Paleocene estimates. Insect and oligochaete burrows increase in abundance during the PETM, suggesting longer periods of soil development and improved drainage conditions. Crayfish burrows and molluscan body fossils, abundant below and above the PETM interval, are significantly less abundant during the PETM, likely because of drier floodplain conditions and lower water tables. Burrow diameters of the most abundant ichnofossils are 30-46% smaller within the PETM interval. As burrow size is a proxy for body size, significant reductions in burrow diameter suggest that their tracemakers were smaller bodied. Smaller body sizes may have resulted from higher subsurface temperatures, lower soil moisture conditions, or nutritionally deficient vegetation in the high-CO2 atmosphere inferred for the PETM. Smaller soil fauna co-occur with dwarf mammal taxa during the PETM; thus, a common forcing mechanism may have selected for small size in both above- and below-ground terrestrial communities. We predict that soil fauna have already shown reductions in size over the last 150 years of increased atmospheric CO2 and surface temperatures or that they will exhibit this pattern over the next century. We retrodict also that soil fauna across the Permian-Triassic and Triassic-Jurassic boundary events show significant size decreases because of similar forcing mechanisms driven by rapid global warming.

[Distribution pattern of meso-micro soil fauna in Eucalyptus grandis plantation].

Science.gov (United States)

Huang, Yumei; Zhang, Jian; Yang, Wanqin

2006-12-01

In this paper, meso-micro soil fauna were extracted and collected by Baermann's and Tullgren' s method, and their distribution pattern in the Eucalyptus grandis plantation of Hongya County, Sichuan Province was studied. A total of 13 550 specimens were collected, belonging to 6 phyla, 13 classes, and 26 orders. Acarina, Nematoda, Collembola were the dominant groups, and Enchytraeidae was the frequent one. The group and individual numbers of meso-micro soil fauna varied with seasons, being the maximum in autumn or winter, fewer in summer, and the minimum in spring. The density of meso-micro soil fauna in soil profile decreased rapidly with increasing soil depth, but a converse distribution was observed from time to time in 5 - 10 cm and 10 - 15 cm soil layers. The meso-micro soil fauna collected by Baermann's and Tullgren's method had a density of 3. 333 x 10(3) - 2. 533 x 10(5) ind x m(-2) and 1.670 x 10(2) - 2.393 x 10(5) ind x m(-2), respectively, and the decreasing rate of the density with the increase of soil depth was higher for those collected by Tullgren's method. The density-group index of meso-micro soil fauna in the E. grandis plantation was the lowest in spring, but the highest in autumn or summer. There were no significant differences in the density of meso-micro soil fauna and in the density-group index between E. grandis plantation and Quercus acutissima secondary forest.

[Early responses of soil fauna in three typical forests of south subtropical China to simulated N deposition addition].

Science.gov (United States)

Xu, Guolian; Mo, Jiangming; Zhou, Guoyi

2005-07-01

In this paper, simulated N deposition addition (0, 50, 100 and 150 kg x hm(-2) x yr(-1)) by spreading water or NH4NO3 was conducted to study the early responses of soil fauna in three typical native forests (monsoon evergreen broadleaf forest, pine forest, and broadleaf-pine mixed forest) of subtropical China. The results showed that in monsoon evergreen broadleaf forest, N deposition addition had an obviously negative effect on the three indexes for soil fauna, but in pine forest, the positive effect was significant (P soil fauna community could reach the level in mixed forest, even that in monsoon evergreen broadleaf forest at sometime. The responses in mixed forest were not obvious. In monsoon evergreen broadleaf forest, the negative effects were significant (P soil fauna groups. The results obtained might imply the N saturation-response mechanisms of forest ecosystems in subtropical China, and the conclusions from this study were also consisted with some related researches.

The effect of soil fauna on carbon sequestration in soil

Czech Academy of Sciences Publication Activity Database

Frouz, Jan; Pižl, Václav; Kaneda, Satoshi; Šimek, Miloslav

2008-01-01

Roč. 10, - (2008) ISSN 1029-7006. [EGU General Assembly 2008. 13.04.2008-18.04.2008, Vienna] Institutional research plan: CEZ:AV0Z60660521 Keywords : soil fauna * carbon sequestration * soil Subject RIV: EH - Ecology, Behaviour

Soil invertebrate fauna affect N2O emissions from soil

NARCIS (Netherlands)

Kuiper, I.; Deyn, de G.B.; Thakur, M.P.; Groenigen, van J.W.

2013-01-01

Nitrous oxide (N2O) emissions from soils contribute significantly to global warming. Mitigation of N2O emissions is severely hampered by a lack of understanding of its main controls. Fluxes can only partly be predicted from soil abiotic factors and microbial analyses – a possible role for soil fauna

Epigeal Fauna and Soil Chemical Attributes in Grazing and Regeneration Areas

Directory of Open Access Journals (Sweden)

Leandro Ribeiro Nogueira

2017-05-01

Full Text Available ABSTRACT The objective of this study was to evaluate the influence of natural pasture and spontaneous regeneration on soil chemical properties and epigeal fauna community using a secondary Atlantic Forest as reference. The study areas were located in Passa Vinte, Minas Gerais, Brazil. In each study area, pitfall traps were used to sample epigeal fauna in the dry and rainy seasons. Earth samples were collected at a depth of 0-5 cm in the dry and rainy seasons for analysis of chemical attributes. The pasture and regeneration areas showed an overall activity of epigeal fauna and functional groups similar to the forest area. However, the diversity evaluated by the Shannon and Pielou evenness indices and the total richness were lower than the observed in the forest. The best fertility attributes were observed in the forest and pasture areas.

Soil arthropod fauna from natural ecosites and reclaimed oil sands soils in northern Alberta

Energy Technology Data Exchange (ETDEWEB)

Battigelli, J.P.; Leskiw, L.A. [Paragon Soil and Environmental Consulting Inc., Edmonton, AB (Canada)

2006-07-01

An understanding of soil invertebrates may facilitate current reclamation activities in the oil sands region of Alberta. This paper presented the results of a study investigating the density, diversity, and structure of soil arthropod assemblages in natural habitats and reclaimed sites. The purpose of the study was to establish a baseline inventory of soil arthropod assemblages in order to enable long-term monitoring of soil arthropod recolonization in disturbed sites. Nine natural ecosites were sampled for the study, including peat mix over secondary material over tailing sand; direct placement over tailing sand; peat mix over secondary over overburden; direct placement over overburden; peat mix over tailing sand; and peat mix over overburden. Samples were collected from previously established long-term soil and vegetation treatment plots in both natural ecosites and reclaimed soil sites located near Fort McMurray, Alberta. Results showed that densities of mesofauna were significantly higher in samples collected from natural ecosites. Acari and Collembola represented approximately 97 to 98 per cent of the fauna collected. It was also noted that the overall structure of the soil mesofauna community differed between natural soils and reclaimed soils. A significant reduction in the abundance of oribatid mites was observed in soils that had been reclaimed for over 34 years. Changes in the soil mesofauna community structure suggested that reclaimed soils continue to represent disturbed ecosites, as was indicated by higher proportions of prostigmatid mites and some collembolan families. Differences in community structure may influence soil ecosystem functions, including decomposition rates; nutrient recycling; soil structure; and fungal and bacterial biomass. It was concluded that further research is needed to examine oribatid mites and collembolan species diversity and community structure in reclaimed soils. 18 refs., 6 figs.

The role of spatial heterogeneity of the environment in soil fauna recovery after fires

Science.gov (United States)

Gongalsky, K. B.; Zaitsev, A. S.

2016-12-01

Forest fires are almost always heterogeneous, leaving less-disturbed sites that are potentially suitable as habitats for soil-dwelling creatures. The recovery of large soil animal communities after fires is therefore dependent on the spatial structure of the burned habitats. The role of locally less disturbed sites in the survival of soil macrofauna communities along with traditionally considered immigration from the surrounding undisturbed habitats is shown by the example of burnt areas located in three geographically distant regions of European Russia. Such unburned soil cover sites (perfugia) occupy 5-10% of the total burned habitats. Initially, perfugia are characterized by much higher (200-300% of the average across a burned area) diversity and abundance of soil fauna. A geostatistical method made it possible to estimate the perfugia size for soil macrofauna at 3-8 m.

[A comparative study on soil fauna in native secondary evergreen broad-leaved forest and Chinese fir plantation forests in subtropics].

Science.gov (United States)

Yan, Shaokui; Wang, Silong; Hu, Yalin; Gao, Hong; Zhang, Xiuyong

2004-10-01

In this study, we investigated the response of soil animal communities to the replacement of native secondary forest by Chinese fir plantation forest and successive rotation of Chinese fir in subtropics. Three adjacent forest stands, i.e., native secondary evergreen broad-leaved forest stand (control) and Chinese fir plantation stands of first (20 yr) and second (20 yr) rotations were selected for the comparison of soil fauna. All animals were extracted from the floor litter and 0-15 cm soil layer of the stands in Summer, 2003 by using Tullgren method, wet funnel method and hand-sorting method. Compared to two Chinese fir plantation forests, the native secondary evergreen broad-leaved forest had a higher abundance and a higher taxonomic diversity of animals in soil and litter, but there were no significant differences in the biomass and productivity of soil fauna between all study stands. The abundance or diversity did not differ significantly between the first rotation and second rotation stands, too. The results supported that vegetation cover might be one of the main forces driving the development of soil animal communities, and the effect of successive rotation of Chinese fir on the development of soil fauna was a slow-running process.

Species-specific effects of soil fauna on fungal foraging and decomposition.

Science.gov (United States)

Crowther, Thomas W; Boddy, Lynne; Jones, T Hefin

2011-10-01

Decomposer fungi are primary decomposing agents in terrestrial soils. Their mycelial networks play an important role in nutrient mineralisation and distribution, but are also nutritious resources for various soil invertebrates. Global climate change is predicted to alter the diversity and community composition of these soil fauna. To understand whether changes in invertebrate species diversity are likely to affect fungal-mediated decomposition, this study compared the grazing potentials of different invertebrate taxa and functional groups. Specifically, the grazing impacts of seven invertebrate taxa on the growth and spatial distribution of six basidiomycete fungi growing from beech wood blocks in soil microcosms were explored. Wood decay rates by fungi were also compared. The consequences of grazing were both taxon- and species-specific. Generally, macro-invertebrates caused the greatest damage, while meso- and micro-invertebrates often stimulated mycelial growth. Invertebrate size, preferences and population dynamics are likely to influence grazing potentials. Effects of grazing varied between fungi, with mycelial morphology and biochemistry possibly influencing susceptibility. Heavy grazing indirectly increased fungal-mediated wood decomposition. Changes in invertebrate community composition are predicted to have consequences for fungal growth, activity and community structure in woodland soils. Abiotic climate change factors including CO(2) and temperature affect mycelial productivity directly, but the indirect effects, mediated through changes in the soil invertebrate community, may be equally important in controlling ecosystem functioning.

Water, Rather than Temperature, Dominantly Impacts How Soil Fauna Affect Dissolved Carbon and Nitrogen Release from Fresh Litter during Early Litter Decomposition

Directory of Open Access Journals (Sweden)

Shu Liao

2016-10-01

Full Text Available Longstanding observations suggest that dissolved materials are lost from fresh litter through leaching, but the role of soil fauna in controlling this process has been poorly documented. In this study, a litterbag experiment employing litterbags with different mesh sizes (3 mm to permit soil fauna access and 0.04 mm to exclude fauna access was conducted in three habitats (arid valley, ecotone and subalpine forest with changes in climate and vegetation types to evaluate the effects of soil fauna on the concentrations of dissolved organic carbon (DOC and total dissolved nitrogen (TDN during the first year of decomposition. The results showed that the individual density and community abundance of soil fauna greatly varied among these habitats, but Prostigmata, Isotomidae and Oribatida were the dominant soil invertebrates. At the end of the experiment, the mass remaining of foliar litter ranged from 58% for shrub litter to 77% for birch litter, and the DOC and TDN concentrations decreased to 54%–85% and increased to 34%–269%, respectively, when soil fauna were not present. The effects of soil fauna on the concentrations of both DOC and TDN in foliar litter were greater in the subalpine forest (wetter but colder during the winter and in the arid valley (warmer but drier during the growing season, and this effect was positively correlated with water content. Moreover, the effects of fauna on DOC and TDN concentrations were greater for high-quality litter and were related to the C/N ratio. These results suggest that water, rather than temperature, dominates how fauna affect the release of dissolved substances from fresh litter.

Farmers' knowledge and use of soil fauna in agriculture: a worldwide review

Directory of Open Access Journals (Sweden)

Natasha Pauli

2016-09-01

Full Text Available General knowledge of the small, invisible, or hidden organisms that make soil one of the most biodiverse habitats on Earth is thought to be scarce, despite their importance in food systems and agricultural production. We provide the first worldwide review of high-quality research that reports on farmers' knowledge of soil organisms in agriculture. The depth of farmers' knowledge varied; some farming communities held detailed local taxonomies and observations of soil biota, or used soil biological activity as indicators of soil fertility, while others were largely unaware of soil fauna. Elicitation of soil biota knowledge was often incidental to the main research goal in many of the reviewed studies. Farmers are rarely deliberately or deeply consulted by researchers on their existing knowledge of soil biota, soil ecology, or soil ecological processes. Deeper understanding of how farmers use and value soil life can lead to more effective development of collaborative extension programs, policies, and management initiatives directed at maintaining healthy, living soils.

Soil fauna and its relation with environmental variables in soil management systems

Directory of Open Access Journals (Sweden)

Dilmar Baretta

Full Text Available The present study aims to generate knowledge about the soil fauna, its relation to other explanatory environmental variables, and, besides it, to select edaphic indicators that more contribute to separate the land use systems (LUS. Five different LUS were chosen: conventional tillage with crop rotation (CTCR; no-tillage with crop rotation (NTCR; conventional tillage with crop succession (CTCS; no-tillage with crop succession (NTCS and minimum tillage with crop succession (MTCS. The samples were made in the counties Chapecó, Xanxerê and Ouro Verde located in the state of Santa Catarina, Brazil, and were considered the true replicates of the LUS. In each site, nine points were sampled in a sampling grid of 3 x 3. At the same points, soil was sampled for the physical, chemical and biological attributes (environmental variables. Pitfall traps were used to evaluate the soil fauna. Data were analyzed using principal component analysis (PCA and canonical discriminant analysis (CDA. The soil fauna presented potential to be used as indictors of soil quality, since some groups proved to be sensible to changes of the environmental variables and to soil management and tillage. The soil management using crop rotation (NTCR and CTCR presented higher diversity, compared to the systems using crop succession (NTCS, MTCS and NTCS, evidencing the importance of the soil tillage, independent of the season (summer or winter. The variable that better contributed to explain these changes were the chemical variables (potassium, pH, calcium, organic matter, available phosphorus, potential acidity, and biological variables (Shannon diversity index, Collembola, Pielou equitability index and microbial biomass carbon, respectively.

Interactions between microbial-feeding and predatory soil fauna trigger N2O emissions

NARCIS (Netherlands)

Thakur, M.P.; Groenigen, van J.W.; Kuiper, I.; Deyn, de G.B.

2014-01-01

Recent research has shown that microbial-feeding invertebrate soil fauna species can significantly contribute to N2O emissions. However, in soil food webs microbial-feeding soil fauna interact with each other and with their predators, which affects microbial activity. To date we lack empirical tests

Disturbance-diversity relationships for soil fauna are explained by faunal community biomass in a salt marsh

NARCIS (Netherlands)

Thakur, M.P.; Berg, M.P.; Eisenhauer, N.; van Langevelde, Frank

2014-01-01

Disturbance-diversity relationships have long been studied in ecology with a unimodal relationship as the key prediction. Although this relationship has been widely contested, it is rarely tested for soil invertebrate fauna, an important component of terrestrial biodiversity. We tested

Disturbance–diversity relationships for soil fauna are explained by faunal community biomass in a salt marsh

NARCIS (Netherlands)

Thakur, M.P.; Berg, M.P.; Eisenhauer, N.; Langevelde, van F.

2014-01-01

Disturbance–diversity relationships have long been studied in ecology with a unimodal relationship as the key prediction. Although this relationship has been widely contested, it is rarely tested for soil invertebrate fauna, an important component of terrestrial biodiversity. We tested

A Comparative Study of the Soil Fauna in forests and cultivated land on sandy soils in Suriname

NARCIS (Netherlands)

Drift, van der J.

1963-01-01

1. In the coastal area of Suriname the soil and surface fauna were studied in various types of agricultural land, and compared with the fauna in the adjacent forests. 2. In primeval forest the soil macroarthropods are less numerous than in secondary forest (Formicidae excluded). They range generally

Responses of the soil decomposer community to the radioactive contamination

International Nuclear Information System (INIS)

Svetlana, Maksimova

2004-01-01

The knowledge about biodiversity and about reasons and laws of dynamics of decomposer invertebrates has exclusively important (rather applied, or theoretical) significance for soil science. Earthworms and millipedes are probably the most important members of the soil biota and major contributors to total zoo-mass. Their activities are such that they are extremely important in maintaining soil fertility in a variety of ways. They play an important part in the redistribution of radionuclides accumulated in the natural biogeocenoses and accumulation of radionuclides in their bodies depends on their concentration in the habitat. Since radionuclides can limit biological activity, studies to estimate the tolerance of decomposer community to potentially toxic radiators are needed. The effect of radioactive contamination on the soil invertebrates and decomposition processes in the different biogeocenoses we intensively studied during 17 years after Chernobyl accident. The soil invertebrates were collected according to generally accepted method by M. Ghilyarov. Soil samples were 0,25 m 2 and animals were extracted from samples by hand sorting. Usually decomposition was affected by the presence of decomposer fauna. Considerable differences were found in the species number. The species composition of sites differed clearly. The study showed that the fauna was poorer under increasing levels of radioactive contamination. The higher radionuclide content was found to result in suppression of decomposer community. The results showed a vertical migration of earthworms to deeper soil layers with increasing of radioactive contamination. With the absence of decomposer fauna due to migration to the deeper layer and mortality, the layer of litter increased. The results show that the earthworms were of small size. Cocoon production decreased. Radioactive contamination altered the process of reproduction and age structure of decomposer fauna. The invertebrates collected from the

Responses of the soil decomposer community to the radioactive contamination

Energy Technology Data Exchange (ETDEWEB)

Svetlana, Maksimova [Institute of Zoology of National Academy of Sciences of Belarus, Minsk (Belarus)

2004-07-01

The knowledge about biodiversity and about reasons and laws of dynamics of decomposer invertebrates has exclusively important (rather applied, or theoretical) significance for soil science. Earthworms and millipedes are probably the most important members of the soil biota and major contributors to total zoo-mass. Their activities are such that they are extremely important in maintaining soil fertility in a variety of ways. They play an important part in the redistribution of radionuclides accumulated in the natural biogeocenoses and accumulation of radionuclides in their bodies depends on their concentration in the habitat. Since radionuclides can limit biological activity, studies to estimate the tolerance of decomposer community to potentially toxic radiators are needed. The effect of radioactive contamination on the soil invertebrates and decomposition processes in the different biogeocenoses we intensively studied during 17 years after Chernobyl accident. The soil invertebrates were collected according to generally accepted method by M. Ghilyarov. Soil samples were 0,25 m{sup 2} and animals were extracted from samples by hand sorting. Usually decomposition was affected by the presence of decomposer fauna. Considerable differences were found in the species number. The species composition of sites differed clearly. The study showed that the fauna was poorer under increasing levels of radioactive contamination. The higher radionuclide content was found to result in suppression of decomposer community. The results showed a vertical migration of earthworms to deeper soil layers with increasing of radioactive contamination. With the absence of decomposer fauna due to migration to the deeper layer and mortality, the layer of litter increased. The results show that the earthworms were of small size. Cocoon production decreased. Radioactive contamination altered the process of reproduction and age structure of decomposer fauna. The invertebrates collected from the

Impact of agricultural practices on selected soil decomposers fauna

International Nuclear Information System (INIS)

Abdalatif, M. A.; Alrayah, A.; Azar, W. Z.

2009-01-01

Soil decomposers fauna i.e. collembolan, mites and nematodes were studied and compared between and within sites in relation to site, treatment and time of collection in Shambat arable and El Rwakeeb dry land. Comparison of results between sites showed that population density/volume of decomposers fauna sampled from Shambat site exceeded their assemblages sampled from El Rawakeeb site. Treatment application in form of cattle manure and neem leaves powder were observed to induce insignificant changes in the three faunal groups between the two sites. Temporal variations showed significant annual variations and insignificant seasonal variations between the two sites. Within each site, population density/volume of each of collembolan, mites and nematodes increased in response to cattle manure application in both sites. Whereas, neem leaves powder application induced a significant decrease in population density/volume of collembola in both sites. These results are generally attributed to variability of soil properties which may add to the suitability of Shambat soil to El Rawakeeb one for the survival of decomposers fauna. Within each site, increase in population density/volume of these fauna upon cattle manure application was attributed to ability of cattle manure to improve soil properties and to provide food. The negative effect of neem leaves powder on mites and nematodes was attributed to neem toxicity, whereas, its positive effects on collembolan was attributed to the ability of collembolan to withstand neem toxicity, collembolan probably physiologically resistant and the neem powder provided food, thus increasing its numbers compared to the central treatment.(Author)

Climate and litter quality differently modulate the effects of soil fauna on litter decomposition across biomes.

Science.gov (United States)

García-Palacios, Pablo; Maestre, Fernando T; Kattge, Jens; Wall, Diana H

2013-08-01

Climate and litter quality have been identified as major drivers of litter decomposition at large spatial scales. However, the role played by soil fauna remains largely unknown, despite its importance for litter fragmentation and microbial activity. We synthesised litterbag studies to quantify the effect sizes of soil fauna on litter decomposition rates at the global and biome scales, and to assess how climate, litter quality and soil fauna interact to determine such rates. Soil fauna consistently enhanced litter decomposition at both global and biome scales (average increment ~ 37%). [corrected]. However, climate and litter quality differently modulated the effects of soil fauna on decomposition rates between biomes, from climate-driven biomes to those where climate effects were mediated by changes in litter quality. Our results advocate for the inclusion of biome-specific soil fauna effects on litter decomposition as a mean to reduce the unexplained variation in large-scale decomposition models. © 2013 John Wiley & Sons Ltd/CNRS.

Relationships between soil properties and community structure of soil macroinvertebrates in oak-history forests along an acidic deposition gradient

Energy Technology Data Exchange (ETDEWEB)

Kuperman, R.G. [Argonne National Lab., IL (United States). Environmental Assessment Div.

1996-02-01

Soil macroinvertebrate communities were studied in ecologically analogous oak-hickory forests across a three-state atmospheric pollution gradient in Illinois, Indiana, and Ohio. The goal was to investigate changes in the community structure of soil fauna in study sites receiving different amounts of acidic deposition for several decades and the possible relationships between these changes and physico-chemical properties of soil. The study revealed significant differences in the numbers of soil animals among the three study sites. The sharply differentiated pattern of soil macroinvertebrate fauna seems closely linked to soil chemistry. Significant correlations of the abundance of soil macroinvertebrates with soil parameters suggest that their populations could have been affected by acidic deposition in the region. Abundance of total soil macroinvertebrates decreased with the increased cumulative loading of acidic deposition. Among the groups most sensitive to deposition were: earthworms gastropods, dipteran larvae, termites, and predatory beetles. The results of the study support the hypothesis that chronic long-term acidic deposition could aversely affect the soil decomposer community which could cause lower organic matter turnover rates leading to an increase in soil organic matter content in high deposition sites.

Ecological Diversity of Soil Fauna as Ecosystem Engineers in Small-Holder Cocoa Plantation in South Konawe

OpenAIRE

Laode Muhammad Harjoni Kilowasid; Tati Suryati Syamsudin; Franciscus Xaverius Susilo; Endah Sulistyawati

2012-01-01

Taxa diversity within soil fauna functional groups can affected ecosystem functioning such as ecosystem engineers,which influence decomposition and nutrient cycling. The objective of this study is to describe ecological diversityvariation within soil fauna as ecosystem engineers in soil ecosystem of cocoa (Theobroma cacao L.) plantation.Sampling was conducted during one year period from five different ages of plantation. Soil fauna removed from soilcore using hand sorting methods. A total of ...

Soil fauna and organic amendment interactions affect soil carbon and crop performance in semi-arid West Africa

OpenAIRE

Ouédraogo, E.; Brussaard, L.; Stroosnijder, L.

2007-01-01

A field experiment was conducted at Kaibo in southern Burkina Faso on an Eutric Cambisol during the 2000 rainy season to assess the interaction of organic amendment quality and soil fauna, affecting soil organic carbon and sorghum ( Sorghum bicolor L. Moench) performance. Plots were treated with the pesticides Dursban and Endosulfan to exclude soil fauna or left untreated. Sub-treatments consisted of surface-placed maize straw ( C/N ratio= 58), Andropogon straw ( C/N ratio= 153), cattle dung ...

Effects of of habitats and pesticides on aerobic capacity and survival of soil fauna.

Science.gov (United States)

Tripathi, G; Sharma, B M

2005-06-01

Faunal health is largely dependent on their soil environment and available litter quality. So the effects of different soil habitats and pesticides on citrate synthase (CS) activity of soil fauna and its population were studied. The soil animals were collected from different pedoecosystems for habitat study. Whereas Vigna radiata based system was selected for pesticidal observations. The field was divided into five equal plots for control and treatment of gamma-BHC, quinalphos, carbaryl and cypermethrin. Soil fauna was collected by quadrat method and extracted by Tullgren funnel. Individuals of a species having similar sizes were collected for the estimation of CS activity. They were homogenized and fractions were obtained by differential centrifugation. The activity of CS was assayed spectrophotometrically. Citrate synthase (CS) activity of beetle (Rasphytus fregi), woodlouse (Porcellio laevis) and centipede (Scolopendra morsitans) varied significantly with respect to changes in different soil habitats. Though the CS activity of R. fregi, P. laevis, and S. morsitans differed among themselves but the highest activity of CS in these animals was in V. radiata and lowest in A. nilotica based pedoecosystem. The aerobic capacity of centipede was maximum followed by woodlouse and beetle. The treatment of gamma-BHC, quinalphos, carbaryl and cypermethrin significantly reduced the CS activity of these animals. Gamma-BHC showed maximum reduction in CS activity indicating highly toxic effect of organochlorine on aerobic metabolism of soil fauna. However, minimum reduction was observed in response to carbaryl (in beetle) or cypermethrin (in woodlouse/centipede) leading to impairment of aerobic capacity. The differences in pesticide effects might be assigned to the differences in chemical nature of pesticides and their interactions with below-ground fauna. Treatment of gamma-BHC and quinalphos reduced the population of Acari, Coleoptera, Collembola, other arthropods as well as

On the role of soil fauna in providing soil functions - a meta study

Science.gov (United States)

Lang, Birgit; Russell, David J.; Vogel, Hans-Jörg; Wollschläger, Ute

2017-04-01

Fertile soils are fundamental for the production of biomass and therefore for the provision of goods such as food or fuel. However, soils are threatened by e.g. land degradation, but once lost their functionality cannot simply be replaced as soils are complex systems developed over long time periods. Thus, to develop strategies for sustainable soil use and management, we need a comprehensive functional understanding of soil systems. To this end, the interdisciplinary research program "Soil as a Natural Resource for the Bio-Economy - BonaRes" was launched by the German Federal Government in 2015. One part of this program is the development of a Knowledge Centre for soil functions and services. As part of the Knowledge Centre, we focus on the identification and quantification of biological drivers of soil functions. Based on a systematic review of existing literature, we assess the importance of different soil faunal groups for the soil functions and processes most relevant to agricultural production (i.e. decomposition, mineralization, soil structuring. Additionally, we investigate direct impacts of soil fauna on soil properties (e.g. aggregation, pore volume). As site specific conditions such as climate, soil type or management practices affect soil fauna and their performance, these responses must also be taken into account. In the end, our findings will be used in the development of modeling tools aiming to predict the impacts of different management measures on soil ecosystem services and functions.

Soil macroinvertebrate communities across a productivity gradient in deciduous forests of eastern North America

Science.gov (United States)

Evelyn S. Wenk; Mac A. Callaham; Joseph O' Brien; Paul J. Hanson

2016-01-01

Within the temperate, deciduous forests of the eastern US, diverse soil-fauna communities are structured by a combination of environmental gradients and interactions with other biota. The introduction of non-native soil taxa has altered communities and soil processes, and adds another degree of variability to these systems. We sampled soil macroinvertebrate abundance...

Influence of radioactive environment pollution upon soil fauna at the region of Chernobylsk Atomic Power Station

International Nuclear Information System (INIS)

Krivolutskij, D.A.; Pokarzhevskij, A.D.; Usachev, V.L.; Shein, G.N.; Nadvornyj, V.G.; Viktorov, A.G.

1991-01-01

Populations of soil fauna in the region of 30-km zone of Chernobylsk NPP accident were investigated. in July, September and October of 1986, in April of 1987 and in October of 1988. It is shown that number of soecies of soil microarthropods and their populations in soils of pine forests around the NPP reduced sharply during the first year after the accident, as compared to the standard. Decrease of number and biomass of earthworm populations was observed in soils of agroecosystems. Decrease of share young specimen was especially noticeable. Populations of settled specimens of soil fauna regenerated slowly during the second year after the accident, the second year after the accident, and regeneration of the total population of soil fauna in 30-km zone proceeded due to poupylations of migrating specimens. 2-2.5 years later the population and biomass of soil fauna in contaminated regions regerated completely

Soil Fauna Affects Dissolved Carbon and Nitrogen in Foliar Litter in Alpine Forest and Alpine Meadow.

Science.gov (United States)

Liao, Shu; Yang, Wanqin; Tan, Yu; Peng, Yan; Li, Jun; Tan, Bo; Wu, Fuzhong

2015-01-01

Dissolved organic carbon (DOC) and total dissolved nitrogen (TDN) are generally considered important active biogeochemical pools of total carbon and nitrogen. Many studies have documented the contributions of soil fauna to litter decomposition, but the effects of the soil fauna on labile substances (i.e., DOC and TDN) in litter during early decomposition are not completely clear. Therefore, a field litterbag experiment was carried out from 13th November 2013 to 23rd October 2014 in an alpine forest and an alpine meadow located on the eastern Tibetan Plateau. Litterbags with different mesh sizes were used to provide access to or prohibit the access of the soil fauna, and the concentrations of DOC and TDN in the foliar litter were measured during the winter (the onset of freezing, deep freezing and thawing stage) and the growing season (early and late). After one year of field incubation, the concentration of DOC in the litter significantly decreased, whereas the TDN concentration in the litter increased. Similar dynamic patterns were detected under the effects of the soil fauna on both DOC and TDN in the litter between the alpine forest and the alpine meadow. The soil fauna showed greater positive effects on decreasing DOC concentration in the litter in the winter than in the growing season. In contrast, the dynamics of TND in the litter were related to seasonal changes in environmental factors, rather than the soil fauna. In addition, the soil fauna promoted a decrease in litter DOC/TDN ratio in both the alpine forest and the alpine meadow throughout the first year of decomposition, except for in the late growing season. These results suggest that the soil fauna can promote decreases in DOC and TDN concentrations in litter, contributing to early litter decomposition in these cold biomes.

Can the soil fauna of boreal forests recover from lead-derived stress in a shooting range area?

Science.gov (United States)

Selonen, Salla; Liiri, Mira; Setälä, Heikki

2014-04-01

The responses of soil faunal communities to lead (Pb) contamination in a shooting range area and the recovery of these fauna after range abandonment were studied by comparing the communities at an active shotgun shooting range, an abandoned shooting range, and a control site, locating in the same forest. Despite the similar overall Pb pellet load at the shooting ranges, reaching up to 4 kg m(-2), Pb concentrations in the top soil of the abandoned range has decreased due to the accumulation of detritus on the soil surface. As a consequence, soil animal communities were shown to recover from Pb-related disturbances by utilizing the less contaminated soil layer. Microarthropods showed the clearest signs of recovery, their numbers and community composition being close to those detected at the control site. However, in the deepest organic soil layer, the negative effects of Pb were more pronounced at the abandoned than at the active shooting range, which was detected as altered microarthropod and nematode community structures, reduced abundances of several microarthropod taxa, and the total absence of enchytraeid worms. Thus, although the accumulation of fresh litter on soil surface can promote the recovery of decomposer communities in the top soil, the gradual release of Pb from corroding pellets may pose a long-lasting risk for decomposer taxa deeper in the soil.

Effects of Formica ants on soil fauna-results from a short-term exclusion and a long-term natural experiment.

Science.gov (United States)

Lenoir, Lisette; Bengtsson, Jan; Persson, Tryggve

2003-02-01

Wood ants (Formica spp.) were hypothesised to affect the composition and greatly reduce the abundance of large-sized soil fauna by predation. This was tested in two ways. Firstly, a 4-year-long experimental study was carried out in a mixed forest. Five ant-free 1.3-m(2) plots were created by fenced exclosures within an ant territory. Five nearby plots had fences with entrances for the ants. In addition, five non-fenced control plots were selected. Soil fauna (e.g. Coleoptera, Diptera larvae, Collembola and Araneae) was sampled during the summers of 1997-2000. The soil fauna was affected by the exclosures but there was no detectable effect of ants on the soil fauna. Secondly, soil fauna was studied within a large-scale natural experiment in which the long-term (30 years) effects of red wood ants could be assessed inside and outside ant territories. This long-term natural experiment revealed no significant effects of ants on the abundance or composition of soil fauna. The results from the two studies indicate that the effects of wood ants on soil fauna are fairly small. The hypothesis that wood ants are key-stone predators on soil fauna could, thus, not be supported.

Effect of radioactive pollution of the environment on soil fauna in the region of the Chernobyl atomic station

International Nuclear Information System (INIS)

Krivolutskii, D.A.; Pokarzhevskii, A.D.; Usachev, V.L.; Shein, G.N.; Nadvornyi, V.G.; Viktorov, A.G.

1991-01-01

Investigations of soil fauna populations within a 30-km zone around the Chernobyl Atomic Energy Station between July 1986 and October 1988 showed a marked decrease in the first year after the accident in the species composition of soil microarthropods and in the abundance of their populations in soils of the local pine [Pinus] forests. The soils of agroecosystems showed a decrease in young individuals. In the second year after the accident, the populations of settled species of soil fauna recovered slowly, and recovery of the total abundance of soil fauna in the 30-km zone occurred due to populations of migrating species. After 2-2.5 years, the abundance and biomass of soil fauna populations in polluted areas had recovered

Effects of Altered Temperature & Precipitation on Soil Bacterial & Microfaunal Communities as Mediated by Biological Soil Crusts

Energy Technology Data Exchange (ETDEWEB)

Neher, Deborah A. [University of Vermont

2004-08-31

With increased temperatures in our original pot study we observed a decline in lichen/moss crust cover and with that a decline in carbon and nitrogen fixation, and thus a probable decline of C and N input into crusts and soils. Soil bacteria and fauna were affected negatively by increased temperature in both light and dark crusts, and with movement from cool to hot and hot to hotter desert climates. Crust microbial biomass and relative abundance of diazotrophs was reduced greatly after one year, even in pots that were not moved from their original location, although no change in diazotroph community structure was observed. Populations of soil fauna moved from cool to hot deserts were affected more negatively than those moved from hot to hotter deserts.

[Contributions of soil fauna to litter decomposition in alpine/subalpine forests].

Science.gov (United States)

Liu, Rui-Long; Li, Wei-Min; Yang, Wan-Qin; Tan, Bo; Wang, Wen-Jun; Xu, Zhen-Feng; Wu, Fu-Zhong

2013-12-01

A field experiment was conducted using the litterbag method to quantify the contribution of soil fauna to litter mass loss of Salix paraplesia, Sabina saltuaria, Betula albosinensis and Abies faxoniana during different key periods of the decomposition process of the first year (from November 2011 to October 2012). The results showed that the mass loss rate showed S. paraplesia > B. albosinensis > A. faxoniana > S. saltuaria, and the rate in the growing season was greater than in the freeze-thaw season. The contribution rate of soil fauna to the mass decomposition displayed as S. saltuaria (26.7%) > A. faxoniana (18.8%) > B. albosinensis (15.7%) > S. paraplesia (13.2%), which was higher in the freeze-thaw season than in the growing season for litter of B. albo-sinensis and A. faxoniana while vice versa for litter of B. albosinensis and A. faxoniana. The contribution of soil fauna was mainly related to organic C, P and N/P in the freeze-thaw season, while N, C/N, lignin and lignin/cellulose in the growing season.

Evaluating the Applicability of Phi Coefficient in Indicating Habitat Preferences of Forest Soil Fauna Based on a Single Field Study in Subtropical China.

Science.gov (United States)

Cui, Yang; Wang, Silong; Yan, Shaokui

2016-01-01

Phi coefficient directly depends on the frequencies of occurrence of organisms and has been widely used in vegetation ecology to analyse the associations of organisms with site groups, providing a characterization of ecological preference, but its application in soil ecology remains rare. Based on a single field experiment, this study assessed the applicability of phi coefficient in indicating the habitat preferences of soil fauna, through comparing phi coefficient-induced results with those of ordination methods in charactering soil fauna-habitat(factors) relationships. Eight different habitats of soil fauna were implemented by reciprocal transfer of defaunated soil cores between two types of subtropical forests. Canonical correlation analysis (CCorA) showed that ecological patterns of fauna-habitat relationships and inter-fauna taxa relationships expressed, respectively, by phi coefficients and predicted abundances calculated from partial redundancy analysis (RDA), were extremely similar, and a highly significant relationship between the two datasets was observed (Pillai's trace statistic = 1.998, P = 0.007). In addition, highly positive correlations between phi coefficients and predicted abundances for Acari, Collembola, Nematode and Hemiptera were observed using linear regression analysis. Quantitative relationships between habitat preferences and soil chemical variables were also obtained by linear regression, which were analogous to the results displayed in a partial RDA biplot. Our results suggest that phi coefficient could be applicable on a local scale in evaluating habitat preferences of soil fauna at coarse taxonomic levels, and that the phi coefficient-induced information, such as ecological preferences and the associated quantitative relationships with habitat factors, will be largely complementary to the results of ordination methods. The application of phi coefficient in soil ecology may extend our knowledge about habitat preferences and distribution

Microbial biomass and soil fauna during the decomposition of cover crops in no-tillage system

Directory of Open Access Journals (Sweden)

Luciano Colpo Gatiboni

2011-08-01

Full Text Available The decomposition of plant residues is a biological process mediated by soil fauna, but few studies have been done evaluating its dynamics in time during the process of disappearance of straw. This study was carried out in Chapecó, in southern Brazil, with the objective of monitoring modifications in soil fauna populations and the C content in the soil microbial biomass (C SMB during the decomposition of winter cover crop residues in a no-till system. The following treatments were tested: 1 Black oat straw (Avena strigosa Schreb.; 2 Rye straw (Secale cereale L.; 3 Common vetch straw (Vicia sativa L.. The cover crops were grown until full flowering and then cut mechanically with a rolling stalk chopper. The soil fauna and C content in soil microbial biomass (C SMB were assessed during the period of straw decomposition, from October 2006 to February 2007. To evaluate C SMB by the irradiation-extraction method, soil samples from the 0-10 cm layer were used, collected on eight dates, from before until 100 days after residue chopping. The soil fauna was collected with pitfall traps on seven dates up to 85 days after residue chopping. The phytomass decomposition of common vetch was faster than of black oat and rye residues. The C SMB decreased during the process of straw decomposition, fastest in the treatment with common vetch. In the common vetch treatment, the diversity of the soil fauna was reduced at the end of the decomposition process.

Response of soil fauna to simulated nitrogen deposition: a nursery experiment in subtropical China.

Science.gov (United States)

Xu, Guo-Liang; Mo, Jiang-Ming; Fu, Sheng-Lei; Gundersen, Per; Zhou, Guo-Yi; Xue, Jing-Hua

2007-01-01

We studied the responses of soil fauna to a simulated nitrogen deposition in nursery experimental plots in Subtropical China. Dissolved NH4NO3 was applied to the soil by spraying twice per month for 16 months, starting in January 2003 with treatments of 0, 5, 10, 15 and 30 gN/(m2 x a). Soil fauna was sampled after 6, 9, 13 and 16 months of treatment in three soil depths (0-5 cm, 5-10 cm, 10-15 cm). Soil available N increased in correspondence with the increasing N treatment, whereas soil pH decreased. Bacterial and fungal densities were elevated by the N treatment. Soil fauna increased in the lower nitrogen treatments but decreased in the higher N treatments, which might indicate that there was a threshold around 10 gN/(m2 x a) for the stimulating effects of N addition. The N effects were dependent on the soil depth and sampling time. The data also suggested that the effects of the different N treatments were related to the level of N saturation, especially the concentration of NO3- in the soil.

Scale-specific correlations between habitat heterogeneity and soil fauna diversity along a landscape structure gradient.

Science.gov (United States)

Vanbergen, Adam J; Watt, Allan D; Mitchell, Ruth; Truscott, Anne-Marie; Palmer, Stephen C F; Ivits, Eva; Eggleton, Paul; Jones, T Hefin; Sousa, José Paulo

2007-09-01

Habitat heterogeneity contributes to the maintenance of diversity, but the extent that landscape-scale rather than local-scale heterogeneity influences the diversity of soil invertebrates-species with small range sizes-is less clear. Using a Scottish habitat heterogeneity gradient we correlated Collembola and lumbricid worm species richness and abundance with different elements (forest cover, habitat richness and patchiness) and qualities (plant species richness, soil variables) of habitat heterogeneity, at landscape (1 km(2)) and local (up to 200 m(2)) scales. Soil fauna assemblages showed considerable turnover in species composition along this habitat heterogeneity gradient. Soil fauna species richness and turnover was greatest in landscapes that were a mosaic of habitats. Soil fauna diversity was hump-shaped along a gradient of forest cover, peaking where there was a mixture of forest and open habitats in the landscape. Landscape-scale habitat richness was positively correlated with lumbricid diversity, while Collembola and lumbricid abundances were negatively and positively related to landscape spatial patchiness. Furthermore, soil fauna diversity was positively correlated with plant diversity, which in turn peaked in the sites that were a mosaic of forest and open habitat patches. There was less evidence that local-scale habitat variables (habitat richness, tree cover, plant species richness, litter cover, soil pH, depth of organic horizon) affected soil fauna diversity: Collembola diversity was independent of all these measures, while lumbricid diversity positively and negatively correlated with vascular plant species richness and tree canopy density. Landscape-scale habitat heterogeneity affects soil diversity regardless of taxon, while the influence of habitat heterogeneity at local scales is dependent on taxon identity, and hence ecological traits, e.g. body size. Landscape-scale habitat heterogeneity by providing different niches and refuges, together

HUBUNGAN KEDEKATAN EKOLOGIS ANTARA FAUNA TANAH DENGAN KARAKTERISTIK TANAH GAMBUT YANG DIDRAINASE UNTUK HTI Acacia crassicarpa (Ecological Proximity Relationship Between Soil Fauna and The Characteristics of Drained Peatland for Industrial Plantation

Directory of Open Access Journals (Sweden)

Yunita Lisnawati

2014-10-01

yang tinggi dan mempunyai tingkat kematangan yang masih rendah.   ABSTRACT Management of peatlands for HTI cultivation of Acacia crassicarpa begins by making drainage ditches and land clearing, followed by the preparation of land for planting. As for the maintenance activity, it includes weed control using herbicides and fertilizer. Management and maintenance activities certainly have implications for the ecological condition of peatlands, where the changes in ecological conditions due to land conversion will impact the abundance and diversity of soil fauna. Abundance and diversity of soil fauna and ecosystem function showed a very complex relationship not widely known this far.  Soil fauna tendency to select certain habitat is affected by several ecological factors, both biotic and abiotic. The study aims to assess the ecological proximity between the characteristics of peatland drained for HTI cultivation of A. crassicarpa and the abundance of soil fauna. The study was conducted in HTI peatlands of PT. Arara Abadi, Rasau Kuning District, Siak Regency, Riau. Soil fauna sampling was conducted by taking soil sample of 25 x 25 x 25 cm in size.  Separation of soil fauna from the soil was performed by a modification to a barlese funnel. Observed variables were the abundance and the diversity of soil fauna, peat maturity (C/N, water contentof peatand ground water table.  For observing ecological proximity, hierarchical analysis was used.  Result showed that the highest of soil fauna abundance was found in A. crassicarpa stand, 2 year’s old of age. The species diversity of soil fauna in research location included as medium abundant by H’ value 1,2. Formicidae was potential become a low level-humidity bioindicators of peatsoil, which described by those pattern : low water content and higher level of peat maturity. Entomobryidae was potential become a high water content  bioindicator and low level of peat maturity.

Soil nematode community under the non-native trees in the Botanic Garden of Petrozavodsk State University

Directory of Open Access Journals (Sweden)

Sushchuk Anna

2016-12-01

Full Text Available The particularities of soil nematode communities of the rhizosphere of non-native trees were studied in the Botanic Garden of Petrozavodsk State University (Republic of Karelia. Taxonomic diversity, abundance, community structure and ecological indices derived from nematode fauna analysis were used as the evaluation parameters. Nematode fauna included 51 genera, 6 of them were plant parasitic. The dominant eco-trophic group in the nematode community structure of coniferous trees was bacterial feeders; fungal feeders in most cases were observed in the second numbers. The contribution of bacterial feeders was decreased and plant parasites were increased in eco-trophic structure of nematode communities of deciduous trees in compared with coniferous trees. Analysis of ecological indices showed that the state of soil nematode communities reflects complex, structured (stable soil food web in the biocenoses with deciduous trees, and degraded (basal food web – under coniferous trees.

Why should we care about soil fauna? Por que devemos nos importar com a fauna do solo?

Directory of Open Access Journals (Sweden)

Jonathan Michael Anderson

2009-08-01

Full Text Available The reasons why we care about soil fauna are related to their intrinsic, utilitarian and functional values. The intrinsic values embrace aesthetic or moral reasons for conserving below-ground biodiversity. Unfortunately, the protection of soil invertebrates has rarely been a criterion for avoiding changes in land use and management. Utilitarian, or direct use values, have been investigated more extensively for fungi, bacteria and marine invertebrates than for soil fauna. However, some traditional remedies, novel enzymes and pharmaceutical compounds have been derived from earthworms, termites and other groups, and gut symbionts may provide microbial strains with interesting properties for biotechnology. The functional importance of soil invertebrates in ecosystem processes has been a major focus of research in recent decades. It is suggested herein that it is rarely possible to identify the role of soil invertebrates as rate determinants of soil processes at plot and ecosystem scales of hectares and above because other biophysical controls override their effects. There are situations, however, where the activities of functional groups of soil animals, even of species, are synchronised in space or time by plant events, resource inputs, seasonality or other perturbations to the system, and their emergent effects are detectable as higher order controls.As razões porque nos importamos com a fauna do solo estão relacionadas com seus valores intrínsecos, utilitários e funcionais. Os valores intrínsecos abrangem razões morais ou estéticas para conservar a biodiversidade subterrânea. Infelizmente, a proteção dos invertebrados do solo raramente tem sido um critério para evitar mudanças no manejo e uso da terra. Valores utilitários, ou de uso direto, têm sido pesquisados mais extensamente para fungos, bactérias e invertebrados marinhos do que para a fauna do solo. Contudo, alguns remédios tradicionais, enzimas novas e produtos farmac

Litter quality mediated nitrogen effect on plant litter decomposition regardless of soil fauna presence.

Science.gov (United States)

Zhang, Weidong; Chao, Lin; Yang, Qingpeng; Wang, Qingkui; Fang, Yunting; Wang, Silong

2016-10-01

Nitrogen addition has been shown to affect plant litter decomposition in terrestrial ecosystems. The way that nitrogen deposition impacts the relationship between plant litter decomposition and altered soil nitrogen availability is unclear, however. This study examined 18 co-occurring litter types in a subtropical forest in China in terms of their decomposition (1 yr of exposure in the field) with nitrogen addition treatment (0, 0.4, 1.6, and 4.0 mol·N·m -2 ·yr -1 ) and soil fauna exclusion (litter bags with 0.1 and 2 cm mesh size). Results showed that the plant litter decomposition rate is significantly reduced because of nitrogen addition; the strength of the nitrogen addition effect is closely related to the nitrogen addition levels. Plant litters with diverse quality responded to nitrogen addition differently. When soil fauna was present, the nitrogen addition effect on medium-quality or high-quality plant litter decomposition rate was -26% ± 5% and -29% ± 4%, respectively; these values are significantly higher than that of low-quality plant litter decomposition. The pattern is similar when soil fauna is absent. In general, the plant litter decomposition rate is decreased by soil fauna exclusion; an average inhibition of -17% ± 1.5% was exhibited across nitrogen addition treatment and litter quality groups. However, this effect is weakly related to nitrogen addition treatment and plant litter quality. We conclude that the variations in plant litter quality, nitrogen deposition, and soil fauna are important factors of decomposition and nutrient cycling in a subtropical forest ecosystem. © 2016 by the Ecological Society of America.

Effects of ivermectin application on the diversity and function of dung and soil fauna: Regulatory and scientific background information

DEFF Research Database (Denmark)

Adler, Nicole; Blanckenhorn, Wolf U; Bachmann, Jean

2016-01-01

for veterinary medicinal products in the European Union includes a requirement for higher-tier tests when adverse effects on dung organisms are observed in single-species toxicity tests. However, no guidance documents for the performance of higher-tier tests are available. Hence, an international research...... on communities of dung-breeding insects and soil fauna under field conditions, the test method meets the requirements of a higher-tier test as mandated by the European Union. The present study provides contextual information on authorization requirements for veterinary medicinal products and on the structure...... project was undertaken to develop and validate a proposed test method under varying field conditions of climate, soil, and endemic coprophilous fauna at Lethbridge (Canada), Montpellier (France), Zurich (Switzerland), and Wageningen (The Netherlands). The specific objectives were to determine if fecal...

Effects of soil management practices on soil fauna feeding activity in an Indonesian oil palm plantation

OpenAIRE

Tao, Hsiao-Hang; Slade, Eleanor M.; Willis, Katherine J.; Caliman, Jean Pierre; Snaddon, Jake Lanion

2016-01-01

Optimizing the use of available soil management practices in oil palm plantations is crucial to enhance long-term soil fertility and productivity. However, this needs a thorough understanding of the functional responses of soil biota to these management practices. To address this knowledge gap, we used the bait lamina method to investigate the effects of different soil management practices on soil fauna feeding activity, and whether feeding activity was associated with management-mediated cha...

Atmospheric deposition of mercury in Atlantic Forest and ecological risk to soil fauna

Science.gov (United States)

Cristhy Buch, Andressa; Cabral Teixeira, Daniel; Fernandes Correia, Maria Elizabeth; Vieira Silva-Filho, Emmanoel

2014-05-01

The increasing levels of mercury (Hg) found in the atmosphere nowadays has a great contribution from anthropogenic sources and has been a great concern in the past two decades in industrialized countries. Brazil is the seventh country with the highest rate of mercury in the atmosphere. Certainly, the petroleum refineries have significant contribution, seen that 100 million m3 of crude oil are annually processed. These refineries contribute with low generation of solid waste; however, a large fraction of Hg can be emitted to the atmosphere. There are sixteen refineries in Brazil, three of them located in the state of Rio de Janeiro. The Hg is a toxic and hazardous trace element, naturally found in the earth crust. The major input of Hg to ecosystems is through atmospheric deposition (wet and dry), being transported in the atmosphere over large distances. The forest biomes are of great importance in the atmosphere/soil cycling of elemental Hg through foliar uptake and subsequent transfer to the soil through litterfall, which play an important role as Hg sink. The Atlantic Forest of Brazil is the greater contributor of fauna and flora biodiversity in the world and, according to recent studies, this biome has the highest concentrations of mercury in litter in the world, as well as in China, at Subtropical Forest. Ecotoxicological assessments can predict the potential ecological risk of Hg toxicity in the soil can lead to impact the soil fauna and indirectly other trophic levels of the food chain within one or more ecosystems. This study aims to determine mercury levels that represent risks to diversity and functioning of soil fauna in tropical forest soils. The study is conducted in two forest areas inserted into conservation units of Rio de Janeiro state. One area is located next to an important petroleum refinery in activity since fifty-two years ago, whereas the other one is located next to other refinery under construction (beginning activities in 2015), which will

Produced water irrigation changes the soil mesofauna community in a semiarid agroecosystem.

Science.gov (United States)

Ferreira, Raimundo Nonato Costa; Weber, Olmar Baller; Crisóstomo, Lindbergue Araujo

2015-08-01

The scarcity of water in semiarid regions requires alternative sources for irrigation to improve agricultural production. Here, we aimed to evaluate the effects of produced water from oil exploration on the structure of soil mesofauna during the dry and rainy seasons in irrigated sunflower and castor bean fields in a Brazilian semiarid region. Three irrigation treatments were applied on plots cultivated with castor beans and sunflowers: produced water treated by filtration (filtrated) or treated by reverse osmosis (reverse osmosis) and groundwater. The mesofauna under the biofuel crops was collected and identified during the dry and rainy seasons. Although the abundance and richness of the total fauna did not differ between seasons in sunflower plots, the community was altered. In castor beans, the abundance, richness, and community of mesofauna observed in plots irrigated with produced water differed from the groundwater treatment. Irrigation with produced water promotes important changes in soil fauna community that justify their assessment for the maintenance and monitoring of agroecosystems.

Microbe-mediated plant-soil feedback in pioneer stages of secondary succession causes long-lasting historical contingency effects in plant community composition.

NARCIS (Netherlands)

Kardol, P.; Bezemer, T.M.; Putten, van der W.H.

2006-01-01

Soil microbes and soil fauna have been assumed to play a key role in interspecific plant competition and successional community development. It has been suggested that plants can influence their performance by changing the composition of their associated soil communities. Such feedback effects may

Soil ecological interactions: comparisons between tropical and subalpine forests

Science.gov (United States)

Grizelle Gonzalez; Ruth E. Ley; Steven K. Schmidt; Xiaoming Zou; Timothy R. Seastedt

2001-01-01

Soil fauna can influence soil processes through interactions with the microbial community. Due to the complexity of the functional roles of fauna and their effects on microbes, little consensus has been reached on the extent to which soil fauna can regulate microbial activities. We quantified soil microbial biomass and maximum growth rates in control and fauna-excluded...

Effects of ivermectin application on the diversity and function of dung and soil fauna: Regulatory and scientific background information.

Science.gov (United States)

Adler, Nicole; Bachmann, Jean; Blanckenhorn, Wolf U; Floate, Kevin D; Jensen, John; Römbke, Jörg

2016-08-01

The application of veterinary medical products to livestock can impact soil organisms in manure-amended fields or adversely affect organisms that colonize dung pats of treated animals and potentially retard the degradation of dung on pastures. For this reason, the authorization process for veterinary medicinal products in the European Union includes a requirement for higher-tier tests when adverse effects on dung organisms are observed in single-species toxicity tests. However, no guidance documents for the performance of higher-tier tests are available. Hence, an international research project was undertaken to develop and validate a proposed test method under varying field conditions of climate, soil, and endemic coprophilous fauna at Lethbridge (Canada), Montpellier (France), Zurich (Switzerland), and Wageningen (The Netherlands). The specific objectives were to determine if fecal residues of an anthelmintic with known insecticidal activity (ivermectin) showed similar effects across sites on 1) insects breeding in dung of treated animals, 2) coprophilous organisms in the soil beneath the dung, and 3) rates of dung degradation. By evaluating the effects of parasiticides on communities of dung-breeding insects and soil fauna under field conditions, the test method meets the requirements of a higher-tier test as mandated by the European Union. The present study provides contextual information on authorization requirements for veterinary medicinal products and on the structure and function of dung and soil organism communities. It also provides a summary of the main findings. Subsequent studies on this issue provide detailed information on different aspects of this overall project. Environ Toxicol Chem 2016;35:1914-1923. © 2015 SETAC. © 2015 SETAC.

Soil fauna and organic amendment interactions affect soil carbon and crop performance in semi-arid West Africa

NARCIS (Netherlands)

Ouédraogo, E.; Brussaard, L.; Stroosnijder, L.

2007-01-01

A field experiment was conducted at Kaibo in southern Burkina Faso on an Eutric Cambisol during the 2000 rainy season to assess the interaction of organic amendment quality and soil fauna, affecting soil organic carbon and sorghum ( Sorghum bicolor L. Moench) performance. Plots were treated with the

[Composition and Density of Soil Fauna in the Region with Enhanced Radioactivity Level (Komi Republic, Vodnyi)].

Science.gov (United States)

Kolesnikova, A A; Kudrin, A A; Konakova, T N; Taskaeva, A A

2015-01-01

Studies on the influence of high levels of radiation on soil fauna were carried out in 2012 in the territory formed as a result of the activity of the enterprise for extraction and production of radium from reservoir water and waste of uranium ore from 1931 to 1956. At present the local radioactive pollution in this area is caused by the presence of heavy natural radionuclides 226Ra, 238U and products of their disintegration in soils. The oppression of soil invertebrate.fauna in pine forests and meadows with high levels of radionuclides and heavy metals is revealed. Also shown is the decrease in the number and density of different taxonomic groups of invertebrates, reduction of the diversity and spectrum of trophic groups and vital forms in the area with a high content of radionuclides in soil. Our results are in agreement with the results obtained by the similar studies showing negative influence of high-level ionizing radiation on soil fauna.

Soil Fauna Transport Versus Radionuclide Migration (invited paper)

International Nuclear Information System (INIS)

Bunnenberg, C.; Taeschner, M.

2000-01-01

From a questionnaire on radioecological topics circulated in the framework of the IUR/EURADOS/EULEP Concerted Action supported by the EC it was concluded that the effect of soil fauna on the redistribution of radionuclides in soils has never been given sufficient attention. The limited data in existence suggest than faunal effects on displacement of radionuclides may be dominant over physicochemical migration. On the basis of a given dataset, an earthworm model is presented which shows that the activity decrease in the top soil layer due to bioturbation may compete with fast physicochemical migration at rates of 1 to 10 cm.y -1 . The model represents a suggestion of how to treat faunal actions and what kind of data are necessary to operate such models. (author)

[Contribution of soil fauna to litter decomposition of Abies faxoniana and Rhododendron lapponicum across an alpine timberline ecotone in Western Sichuan, China.

Science.gov (United States)

Wang, Li Feng; He, Run Lian; Yang, Lin; Chen, Ya Mei; Liu, Yang; Zhang, Jian

2016-11-18

Soil fauna is an important biological factor in regulation litter decomposition. In order to quantify the contributions of soil fauna to the mass losses of litter of two dominant species fir (Abies faxoniana) and rhododendron (Rhododendron lapponicum) in the alpine timberline ecotone (coniferous forest-timberline-alpine meadow) of western Sichuan, China, a field litterbag experiment was conducted from May 2013 to November 2014. Samples of air-dried leaf litter were placed in nylon litterbags of two different mesh sizes, i.e. 3.00 mm (with the soil animals) and 0.04 mm (excluded the soil animals). The results showed that the decomposition rate of A. faxoniana (k: 0.209-0.243) was higher than that of R. lapponicum (k: 0.173-0.189) across the timberline ecotone. Soil fauna had significant contributions to litter decomposition of two species, the contributions of soil fauna to mass loss showed a decreasing trend with increasing altitude. From the coniferous forest to the alpine meadow, the mass losses caused by soil fauna for the fir litter accounted for 15.2%, 13.2% and 9.8%, respectively and that for the rhododendron litter accounted for 20.1%, 17.5% and 12.4%, respectively. Meanwhile, the daily average contributions caused by soil fauna for the fir and rhododendron litter decomposition accounted for 0.17%, 0.13%, 0.12% and 0.26%, 0.25%, 0.23%, respectively. Relatively, soil fauna had more influence on alpine rhododendron decomposition. Two-way ANOVA showed that species, altitude and their interaction had significant impact on the litter mass loss and decomposition rate caused by soil fauna. The daily average contribution caused by soil fauna for the fir and rhododendron litter decomposition accounted for 0.25% and 0.44% in the first growing season, then 0.10% and 0.19% in the second growing season, both were higher than that of snow-covered season (0.07% and 0.12%). Regression analysis showed that the environmental factors (daily average temperature, freezing and

Searching the soil: forensic importance of edaphic fauna after the removal of a corpse.

Science.gov (United States)

Saloña, Marta I; Moraza, M Lourdes; Carles-Tolrá, Miguel; Iraola, Victor; Bahillo, Pablo; Yélamos, Tomás; Outerelo, Raimundo; Alcaraz, Rafael

2010-11-01

Arthropods at different stages of development collected from human remains in an advanced stage of decomposition (following autopsy) and from the soil at the scene are reported. The corpse was found in a mixed deciduous forest of Biscay (northern Spain). Soil fauna was extracted by sieving the soil where the corpse lay and placing the remains in Berlese-Tullgren funnels. Necrophagous fauna on the human remains was dominated by the fly Piophilidae: Stearibia nigriceps (Meigen, 1826), mites Ascidae: Proctolaelaps epuraeae (Hirschmann, 1963), Laelapidae: Hypoaspis (Gaeolaelaps) aculeifer (Canestrini, 1884), and the beetle Cleridae: Necrobia rufipes (de Geer, 1775). We confirm the importance of edaphic fauna, especially if the deceased is discovered in natural environs. Related fauna may remain for days after corpse removal and reveal information related to the circumstances of death. The species Nitidulidae: Omosita depressa (Linnaeus, 1758), Acaridae: Sancassania berlesei (Michael, 1903), Ascidae: Zerconopsis remiger (Kramer, 1876) and P. epuraeae, Urodinychidae: Uroobovella pulchella (Berlese, 1904), and Macrochelidae: Glyptholaspis americana (Berlese, 1888) were recorded for the first time in the Iberian Peninsula. 2010 American Academy of Forensic Sciences. Published 2010. This article is a U.S. Government work and is in the public domain in the U.S.A.

Soil fauna in forest and coffee plantations from the Sierra Nevada de Santa Mar ta, Colombia

International Nuclear Information System (INIS)

Camero R, Edgar

2002-01-01

Two research stations (M inca, 700 m altitude and Maria Ter esa, 790 m altitude) were established in the Sierra Nevada de Santa Mar ta in places to study the soil fauna associated with forest and coffee plantations. Soil fauna was collected using pitfall and Bailer's traps. Samples were taken from litter as well as from horizons 0, A and B. individuals collected were identified to family level. Diversity, abundance and frequency indexes were used to compare fauna composition at both sites. Significant differences were found between the two research sites as well as with data from other high altitude forest in the Sierra Nevada de Santa Mar ta

Diversity and Abundance of Soil Animals as Influenced by Long-Term Fertilization in Grey Desert Soil, China

OpenAIRE

Maibo Jiang; Xihe Wang; Yunhao Liusui; Xueqing Sun; Chengyi Zhao; Hua Liu

2015-01-01

The relationship between soil fauna and different fertilizer management practices is of growing concern. The aim of this research was to investigate the response of soil fauna to fertilization regimes, to explore the relationships among the community of soil animals, soil moisture and crop yields. The application of organic fertilizers (i.e., sheep manure or crop residues) increased crop yields and promoted the number of individuals and species of soil fauna owing to the exogenous organic mat...

Impacts of twenty years of experimental warming on soil carbon, nitrogen, moisture and soil across alpine/subarctic tundra communities

DEFF Research Database (Denmark)

M. Alatalo, Juha; K. Jägerbrand, Annika; Juhanson, Jaanis

2017-01-01

High-altitude and alpine areas are predicted to experience rapid and substantial increases in future temperature, which may have serious impacts on soil carbon, nutrient and soil fauna. Here we report the impact of 20 years of experimental warming on soil properties and soil mites in three...... contrasting plant communities in alpine/subarctic Sweden. Long-term warming decreased juvenile oribatid mite density, but had no effect on adult oribatids density, total mite density, any major mite group or the most common species. Long-term warming also caused loss of nitrogen, carbon and moisture from...

The influence of land use systems on soil and surface litter fauna in the western region of Santa Catarina

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Marie Luise Carolina Bartz

Full Text Available The aim of this study was to evaluate the abundance of soil and surface litter fauna in the western region of Santa Catarina state, southern Brazil, in the following land use systems (LUS: no-tillage crops (NT, integrated crop-livestock (ICL, pasture (PA, Eucalyptus plantation (EP and native forest fragments (NF. Sampling was done in three counties in the western region of Santa Catarina: Xanxerê, Chapecó and São Miguel do Oeste, in two seasons (winter and summer. The evaluation of soil/litter fauna in each LUS was performed by installing nine "pitfall traps" per sampling grid (3 x 3. The counties are true replicas. The soil for the chemical attributes was collected at the same sampling points for soil fauna. Altogether, 17 taxa were identified in the five LUS. The presence of groups of fauna was influenced by the type of soil management used. The LUS NF and EP provide better soil conditions for the development of a higher diversity of soil fauna groups compared to other LUS, which showed varying degrees of human intervention, regardless of the sampling season (winter or summer. However, annual crop systems NT and ICL groups showed greater richness and total abundance when compared to the perennial systems (EP and PA. Principal component analysis is an important tool in the study of biological indicators of sustainability because it allows use of soil attributes (chemical and physical as explanatory environmental variables, which helps in the interpretation of ecological data.

[Diversity of soil fauna in corn fields in Huang-Huai-Hai Plain of China under effects of conservation tillage].

Science.gov (United States)

Zhu, Qiang-Gen; Zhu, An-Ning; Zhang, Jia-Bao; Zhang, Huan-Chao; Huang, Ping; Zhang, Cong-Zhi

2009-10-01

An investigation was made on the abundance and diversity of soil fauna in the corn fields under conventional and conservation tillage in Huang-Huai-Hai Plain of China. The abundance and diversity of soil fauna were higher at corn maturing (September) than at its jointing stage (July), and higher at jointing stage under conservation tillage than under conventional tillage. Soil fauna mainly distributed in surface soil layer (0-10 cm), but still had a larger number in 10-20 cm layer under conservation tillage. The individuals of acari, diptera, diplura, and microdrile oligochaetes, especially those of acari, were higher under conservation tillage than under conventional tillage. At maturing stage, an obvious effect of straw-returning under conservation tillage was observed, i. e., the more the straw returned, the higher the abundance of soil fauna, among which, the individuals of collembola, acari, coleopteran, and psocoptera, especially those of collembolan, increased significantly. The abundance of collembola at both jointing and maturing stages was significantly positively correlated with the quantity of straw returned, suggesting that collembola played an important role in straw decomposition and nutrient cycling.

Observed trends of soil fauna in the Antarctic Dry Valleys: early signs of shifts predicted under climate change.

Science.gov (United States)

Andriuzzi, W S; Adams, B J; Barrett, J E; Virginia, R A; Wall, D H

2018-02-01

Long-term observations of ecological communities are necessary for generating and testing predictions of ecosystem responses to climate change. We investigated temporal trends and spatial patterns of soil fauna along similar environmental gradients in three sites of the McMurdo Dry Valleys, Antarctica, spanning two distinct climatic phases: a decadal cooling trend from the early 1990s through the austral summer of February 2001, followed by a shift to the current trend of warming summers and more frequent discrete warming events. After February 2001, we observed a decline in the dominant species (the nematode Scottnema lindsayae) and increased abundance and expanded distribution of less common taxa (rotifers, tardigrades, and other nematode species). Such diverging responses have resulted in slightly greater evenness and spatial homogeneity of taxa. However, total abundance of soil fauna appears to be declining, as positive trends of the less common species so far have not compensated for the declining numbers of the dominant species. Interannual variation in the proportion of juveniles in the dominant species was consistent across sites, whereas trends in abundance varied more. Structural equation modeling supports the hypothesis that the observed biological trends arose from dissimilar responses by dominant and less common species to pulses of water availability resulting from enhanced ice melt. No direct effects of mean summer temperature were found, but there is evidence of indirect effects via its weak but significant positive relationship with soil moisture. Our findings show that combining an understanding of species responses to environmental change with long-term observations in the field can provide a context for validating and refining predictions of ecological trends in the abundance and diversity of soil fauna. © 2018 by the Ecological Society of America.

Macrobenthic fauna community in the Middle Songkhla Lake, Southern Thailand

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Angsupanich, S.

2005-02-01

richness was in the SW monsoon season (light rain, June-August. Polychaetes and molluscs tended to decrease in the NE monsoon season with heavy rain from December-February, while crustaceans increased during this time. The best fitting of the environmental variables to explain the macrobenthic fauna community pattern of the Inner Songkhla Lake was an 8-variable combination of %clay, %silt, %organic carbon, soil pH, depth, dissolved oxygen, total suspended solid and temperature (harmonic rank correlation coefficient, ρw = 0.84.

The need for standardisation: Exemplified by a description of the diversity, community structure and ecological indices of soil nematodes

NARCIS (Netherlands)

Griffiths, B.S.; de Groot, G. Arjen; Laros, I.; Stone, D.; Geisen, S.

2018-01-01

Molecular approaches are offering a supplement to, or even the possibility of replacing morphological identification of soil fauna, because of advantages for throughput, coverage and objectivity. We determined ecological indices of nematode community data from four sets of duplicate soil cores,

Factors affecting soil fauna feeding activity in a fragmented lowland temperate deciduous woodland.

Science.gov (United States)

Simpson, Jake E; Slade, Eleanor; Riutta, Terhi; Taylor, Michele E

2012-01-01

British temperate broadleaf woodlands have been widely fragmented since the advent of modern agriculture and development. As a result, a higher proportion of woodland area is now subject to edge effects which can alter the efficiency of ecosystem functions. These areas are particularly sensitive to drought. Decomposition of detritus and nutrient cycling are driven by soil microbe and fauna coactivity. The bait lamina assay was used to assess soil fauna trophic activity in the upper soil horizons at five sites in Wytham Woods, Oxfordshire: two edge, two intermediate and one core site. Faunal trophic activity was highest in the core of the woodland, and lowest at the edge, which was correlated with a decreasing soil moisture gradient. The efficiency of the assay was tested using four different bait flavours: standardised, ash (Fraxinus excelsior L.), oak (Quercus robur L.), and sycamore (Acer pseudoplatanus L.). The standardised bait proved the most efficient flavour in terms of feeding activity. This study suggests that decomposition and nutrient cycling may be compromised in many of the UK's small, fragmented woodlands in the event of drought or climate change.

Contribution of soil fauna to soil functioning in degraded environments: a multidisciplinary approach

Science.gov (United States)

Gargiulo, Laura; Mele, Giacomo; Moradi, Jabbar; Kukla, Jaroslav; Jandová, Kateřina; Frouz, Jan

2016-04-01

The restoration of the soil functions is essential for the recovery of highly degraded sites and, consequently, the study of the soil fauna role in the soil development in such environments has great potential from a practical point of view. The soils of the post-mining sites represent unique models for the study of the natural ecological succession because mining creates similar environments characterized by the same substrate, but by different ages according to the year of closure of mines. The aim of this work was to assess the contribution of different species of macrofauna on the evolution of soil structure and on the composition and activity of the microbial community in soil samples subjected to ecological restoration or characterized by spontaneous ecological succession. For this purpose, an experimental test was carried out in two sites characterized by different post-mining conditions: 1) natural succession, 2) reclamation with planting trees. These sites are located in the post-mining area of Sokolov (Czech Republic). For the experimental test repacked soil cores were prepared in laboratory with sieved soil sampled from the two sites. The soil cores were prepared maintaining the sequence of soil horizons present in the field. These samples were inoculated separately with two genera of earthworms (Lumbricus and Aporrectodea) and two of centipedes (Julida and Polydesmus). In particular, based on their body size, were inoculated for each cylinder 2 individuals of millipedes, 1 individual of Lumbricus and 4 individuals of Aporrectodea. For each treatment and for control samples 5 replicates were prepared and all samples were incubated in field for 1 month in the two original sampling sites. After the incubation the samples were removed from the field and transported in laboratory in order to perform the analysis of microbial respiration, of PLFA (phospholipid-derived fatty acids) and ergosterol contents and finally for the characterization of soil structure

Diversity and Abundance of Soil Animals as Influenced by Long-Term Fertilization in Grey Desert Soil, China

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Maibo Jiang

2015-08-01

Full Text Available The relationship between soil fauna and different fertilizer management practices is of growing concern. The aim of this research was to investigate the response of soil fauna to fertilization regimes, to explore the relationships among the community of soil animals, soil moisture and crop yields. The application of organic fertilizers (i.e., sheep manure or crop residues increased crop yields and promoted the number of individuals and species of soil fauna owing to the exogenous organic matter that fertilizers provided for the survival and development of soil fauna. Furthermore, the treatments that applied sheep manure (i.e., sheep manure only or nitrogen, phosphorus, potassium and sheep manure plus were significantly beneficial for increasing crop yields and diversity of soil fauna compared to treatments with crop residues returned (i.e., crop residues returned only or nitrogen, phosphorus, potassium and crop residues returned to the field (p < 0.05 due to the response of soil fauna to diverse exogenous nutrients and the effect of soil fertility. Therefore, the finding that soil fauna abundance is significantly positively correlated with soil moisture and crop yield may mean the effects of fertilizer applications on soil animals were partly masked by the soil moisture and crop yield.

Edafic fauna under different straw levels in sugarcane crop

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Rossiana Ribeiro Lino de Abreu

2014-09-01

Full Text Available The organisms that constitute the soil fauna are highly relevant to the litter-soil compartments, because they act in important processes, such as fragmentation of the plant material, decomposition and nutrients cycling. This study aimed to evaluate the invertebrate fauna community in soil cultivated with sugarcane harvested without burning, considering the maintenance of different straw levels on the soil surface. Treatments consisted of different amounts of sugarcane straw: T0% (0 Mg ha-1; T25% (2.2 Mg ha-1; T50% (5.1 Mg ha-1; T75% (7.8 Mg ha-1; and T100% (12.0 Mg ha-1. Samples were collected in the dry season and late wet season, with "Pitfall" traps. The number of individuals per trap per day during the dry period ranged from 11.1 (T0% to 14.7 (T25% and, in the rainy season, from 15.11 (T0% to 33.15 (T75%. The highest Shannon values were observed during the rainy season, and the lowest values for diversity and equitability resulted in a higher incidence of Araneae and Formicidae groups. The amount of straw on soil showed no significant influence on ecological indices and total and average wealth. The harvest time affected the number of individuals, species wealth and Shannon and Pielou's indices. The maintenance of straw on the soil surface benefitted the soil fauna, concerning the conventional crop management.

Biosolids applied to agricultural land: Influence on structural and functional endpoints of soil fauna on a short- and long-term scale.

Science.gov (United States)

Coors, Anja; Edwards, Mark; Lorenz, Pascale; Römbke, Jörg; Schmelz, Rüdiger M; Topp, Edward; Waszak, Karolina; Wilkes, Graham; Lapen, David R

2016-08-15

Biosolids have well-documented crop and soil benefits similar to other sources of organic amendment, but there is environmental concern due to biosolids-associated pollutants. The present study investigated two field sites that had received biosolids at commercial-scale rates in parallel to associated field sections which were managed similarly but without receiving biosolids (controls). The investigated endpoints were abundance and diversity of soil organisms (nematodes, enchytraeids and earthworms) and soil fauna feeding activity as measured by the bait lamina assay. Repeated sampling of one of the field sites following the only biosolids application demonstrated an enrichment effect typical for organic amendments, which was mostly exhausted after 44months. After an initial suppression, the proportion of free-living plant-parasitic nematodes tended to increase in the biosolids-amended soil over time. Yet, none of the endpoints at this site indicated significant negative effects resulting from the biosolids until 44months post application. In contrast to the repeatedly tilled first field site, the second one was left fallow after three biosolids applications, and was sampled 96months post last application. It was only at this field site that potential evidence for a long-term impact of biosolids was detected with regard to two endpoints: earthworm abundance and structure of the nematode assemblage. Agricultural management and correlation with abiotic soil parameters explained the observed difference in earthworm abundance. Yet, the development of a highly structured and mature nematode assemblage at the control but not at the biosolids-amended section of this fallow field could not be explained by such correlations nor by soil metal concentrations. Overall, the present study found only weak evidence for negative long-term impacts of biosolids applied at commercial rates on soil fauna. High-level community parameters such as the nematode structure index (SI

Diversity and Spatial-Temporal Distribution of Soil Macrofauna Communities Along Elevation in the Changbai Mountain, China.

Science.gov (United States)

Yin, Xiuqin; Qiu, Lili; Jiang, Yunfeng; Wang, Yeqiao

2017-06-01

The understanding of patterns of vertical variation and diversity of flora and fauna along elevational change has been well established over the past century. However, it is unclear whether there is an elevational distribution pattern for soil fauna. This study revealed the diversity and spatial-temporal distribution of soil macrofauna communities in different vegetation zones from forest to alpine tundra along elevation of the Changbai Mountain, China. The abundance, richness, and Shannon-Wiener diversity index of soil macrofauna communities were compared in four distinguished vegetation zones including the coniferous and broadleaved mixed forest zone, the coniferous forest zone, the subalpine dwarf birch (Betula ermanii) forest zone, and the alpine tundra zone. Soil macrofauna were extracted in May, July, and September of 2009. In each season, the abundance and richness of the soil macrofauna decreased with the ascending elevation. The Shannon-Wiener diversity indices of the soil macrofauna were higher in the vegetation zones of lower elevation than of higher elevation. Significant differences were observed in the abundance, richness, and Shannon-Wiener diversity index for the studied vegetation zones. Soil macrofauna congregated mainly to the litter layer in the low-elevation areas and in the 0-5 cm soil layer of the higher elevation areas. The results emphasized that the diversity of soil macrofauna communities decreased as the elevation increased and possess the distinct characteristics of zonation in the mountain ecosystem. The diversity and distribution of soil macrofauna communities were influenced by mean annual precipitation, altitude, annual radiation quantity, and mean annual temperature. © The Authors 2017. Published by Oxford University Press on behalf of Entomological Society of America. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

Factors affecting soil fauna feeding activity in a fragmented lowland temperate deciduous woodland.

Directory of Open Access Journals (Sweden)

Jake E Simpson

Full Text Available British temperate broadleaf woodlands have been widely fragmented since the advent of modern agriculture and development. As a result, a higher proportion of woodland area is now subject to edge effects which can alter the efficiency of ecosystem functions. These areas are particularly sensitive to drought. Decomposition of detritus and nutrient cycling are driven by soil microbe and fauna coactivity. The bait lamina assay was used to assess soil fauna trophic activity in the upper soil horizons at five sites in Wytham Woods, Oxfordshire: two edge, two intermediate and one core site. Faunal trophic activity was highest in the core of the woodland, and lowest at the edge, which was correlated with a decreasing soil moisture gradient. The efficiency of the assay was tested using four different bait flavours: standardised, ash (Fraxinus excelsior L., oak (Quercus robur L., and sycamore (Acer pseudoplatanus L.. The standardised bait proved the most efficient flavour in terms of feeding activity. This study suggests that decomposition and nutrient cycling may be compromised in many of the UK's small, fragmented woodlands in the event of drought or climate change.

Irrigating poplar energy crops with landfill leachate negatively affects soil micro- and meso-fauna.

Science.gov (United States)

Coyle, David R; Zalesny, Jill A; Zalesny, Ronald S; Wiese, Adam H

2011-10-01

Increased municipal solid waste generated worldwide combined with substantial demand for renewable energy has prompted testing and deployment of woody feedstock production systems that reuse and recycle wastewaters as irrigation and fertilization. Populus selections are ideal for such systems given their fast growth, extensive root systems, and high water usage rates. Maintaining ecological sustainability (i.e., the capacity for an ecosystem to maintain its function and retain its biodiversity over time) during tree establishment and development is an important component of plantation success, especially for belowground faunal populations. To determine the impact of solid waste leachate on soil micro- and meso-fauna, we compared soilfrom eight different Populus clones receiving municipal solid waste landfill leachate irrigation with clones receiving fertilized (N, P K) well water irrigation. Microfauna (i.e., nematodes) communities were more diverse in control soils. Mesofauna (i.e., insects) were associated with all clones; however, they were four times more abundant around trees found within the control plot than those that received leachate treatments. Nematode and insect abundance varied among Populus clones yet insect diversity was greater in the leachate-treated soils. Phytotechnologies must allow for soil faunal sustainability, as upsetting this balance could lead to great reductions in phytotechnology efficacy.

Changes in soil nematode communities under the impact of fertilizers

Science.gov (United States)

Gruzdeva, L. I.; Matveeva, E. M.; Kovalenko, T. E.

2007-06-01

Changes taking place in the communities of soil nematodes of an artificially sown meadow under the impact of annually applied mineral fertilizers have been studied in a field experiment for nine years. It is shown that changes in the species composition, trophic structure, and numbers of nematodes from different genera depend on the fertilizer applied and on the competitiveness of the plant species grown. The spectra of nematode genera sensitive to the complete mineral fertilizer (NPK) and to the particular nutrients have been identified with the use of a number of parameters, including the maturity index of nematode communities, the biotope preferences of the particular nematode genera, and the general pattern of nematode habitats. The results obtained in this study can be used to assess the effect of mineral fertilizers on the soil fauna and to suggest optimum application rates of mineral fertilizers ensuring the sustainable development of meadow herbs. The use of the data on the trophic structure of nematode communities for predicting the ways of organic matter decomposition in the soil is discussed.

[Contribution of soil fauna to the mass loss of Betula albosinensis leaf litter at early decomposition stage of subalpine forest litter in western Sichuan].

Science.gov (United States)

Xia, Lei; Wu, Fu-Zhong; Yang, Wan-Qin; Tan, Bo

2012-02-01

In order to quantify the contribution of soil fauna to the decomposition of birch (Betula albosinensis) leaf litter in subalpine forests in western Sichuan of Southwest China during freeze-thaw season, a field experiment with different mesh sizes (0.02, 0.125, 1 and 3 mm) of litterbags was conducted in a representative birch-fir (Abies faxoniana) forest to investigate the mass loss rate of the birch leaf litter from 26 October, 2010 to 18 April, 2011, and the contributions of micro-, meso- and macro-fauna to the decomposition of the leaf litter. Over the freeze-thaw season, 11.8%, 13.2%, 15.4% and 19.5% of the mass loss were detected in the litterbags with 0.02, 0. 125, 1 and 3 mm mesh sizes, respectively. The total contribution of soil fauna to the litter decomposition accounted for 39.5% of the mass loss, and the taxa and individual relative density of the soil fauna in the litterbags had the similar variation trend with that of the mass loss rate. The contribution rate of soil fauna to the leaf litter mass loss showed the order of micro- soil fauna played an important role in the litter decomposition in subalpine forests of western Sichuan during freeze-thaw season.

Variation in soil macro-fauna diversity in seven humus orders of a Parrotio-Carpinetum forest association on Chromic Cambisols of Shast-klateh area in Iran

Science.gov (United States)

Izadi, M.; Habashi, H.; Waez-Mousavi, S. M.

2017-03-01

Soil biodiversity includes organisms which spend a part or all of their life cycle on or in the soil. Among soil-dwelling animals, macro-fauna as an important group of animals have important effects on the dynamics of soil organic matter and litter decomposition process. The humus forms interact with the climatic conditions, flora, as well as soil fauna, and microbial activity. In new humus form classifications, soil organisms play an important role in separation of humus horizons from one another. The subject of this study was to determine the diversity of macro fauna for different humus forms. We determined humus forms using morphological classification, and then 69 random samples were taken from plots of 100 cm2 in area, and soil macro-fauna species were collected by hand sorting method. Two classes of humus forms, including Mull (with three humus orders, namely Dysmull, Oligomull, and Mesomull,) and Amphi (with four humus orders, namely Leptoamphi, Eumacroamphi, Eumesoamphi, and Pachyamphi) were identified. A number of 13 macro-fauna orders were identified using identification key. Among the humus orders, Shannon diversity, Simpson evenness and Margalef richness indices were the highest in Pachyamphi order. Arthropod diversity in Pachyamphi humus order was higher than those of Mull. These results showed that diversity of soil macrofauna increase by increasing the thickness of the organic horizons (OL, OF, OH), especially OH horizon.

Efeito de restos da cultura do abacaxizeiro e de agrobio na fauna do solo Effect of residues of pineaplle plant and agrobio in the soil fauna

Directory of Open Access Journals (Sweden)

Alecsandra de Almeida

2010-12-01

Full Text Available Objetivou-se avaliar o efeito de restos culturais de abacaxizeiro (Ananas comosus L. 'Smooth Cayenne' na fauna de artrópodes,em cultivos em campo. As mudas, do tipo filhote, foram plantadas no mês de junho, em um Latossolo Vermelho Amarelo, que recebeu 0, 30 e 60t/ha de restos de abacaxizeiro, aplicados superficialmente e incorporados a 10cm de profundidade, com e sem a adição do biofertilizante-Agrobio10% (v/v. Foram coletadas amostras a 05 cm de profundidade aos 90, 210, 330 e 450 dias após a aplicação dos resíduos. Identificou-se, durante os 15 meses de avaliações, o predomínio de Acari e Collembola. A maior densidade de animais foi observada na primeira amostragem, aos 90 dias após a adição dos restos. No entanto, diferenças na abundância da fauna de solo só foram observadas, 330 dias após a adição dos resíduos.This study was conducted under field conditions, in order to determine the effect of pineapple crop (Ananas comosus L. residues on the edaphic arthropod fauna. Slips were planted in June, in Red-Yellow Latossol , with crop residues in amounts of 0, 30 and 60 t/ha, placed on the surface or tilled under 10cm, with and without 10% (v/v Agrobio biofertilizer applied along with the residues and sprayed monthly at 3% (v/v two months after planting. Soil samples were collected from the top 5.0 cm of soil at 90, 210, 330 and 450 days after the application of residues. Over 15 months, the predominance of Acari and Collembolan was observed. The highest density of animals was observed in the first sample, at 90 days after the addition of residues. Nevertheless, differences in soil fauna abundance between treatments were not detected until 330 days after soil management with crop residues.

Study of microarthopod communities to assess soil quality in different managed vineyards

Science.gov (United States)

Gagnarli, E.; Goggioli, D.; Tarchi, F.; Guidi, S.; Nannelli, R.; Vignozzi, N.; Valboa, G.; Lottero, M. R.; Corino, L.; Simoni, S.

2015-01-01

Land use influences the abundance and diversity of soil arthropods. The evaluation of the impact of different management strategies on soil quality is increasingly requested. The determination of communities' structures of edaphic fauna can represent an efficient tool. In this study, in some vineyards in Piedmont (Italy), the effects of two different management systems, organic and integrated pest management (IPM), on soil biota were evaluated. As microarthropods living in soil surface are an important component of soil ecosystem interacting with all the other system components, a multi disciplinary approach was adopted by characterizing also some soil physical and chemical characteristics (soil texture, soil pH, total organic carbon, total nitrogen, calcium carbonate). Soil samplings were carried out on Winter 2011 and Spring 2012. All specimens were counted and determined up to the order level. The biological quality of the soil was defined through the determination of ecological indices, such as QBS-ar, species richness and indices of Shannon-Weaver, Pielou, Margalef and Simpson. The mesofauna abundance was affected by both the type of management and the soil texture. The analysis of microarthropod communities by QBS-ar showed higher values in organic than in IPM managed vineyards; in particular, the values registered in organic vineyards were similar to those characteristic of preserved soils.

Propriedades químicas e fauna do solo influenciadas pela calagem em sistema semeadura direta Effects of liming on chemical properties and soil fauna in no-tillage system

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Henrique Cesar Almeida

2007-10-01

Full Text Available Este trabalho objetivou avaliar o efeito da calagem e sua influência sobre atributos químicos e de fauna do solo em um Cambissolo sob sistema de semeadura direta. O experimento vem sendo conduzido em Lages, SC, desde maio de 2001. Os tratamentos foram: semeadura direta com calcário incorporado na dose de 1 SMP (SD-inc e superficial nas doses de 1/5 SMP (SD-1/5sup e 1/2 SMP (SD-1/2sup. Como padrão, utilizou-se solo sem cultivo e sem aplicação de calcário, e uma área de pastagem perene com calcário incorporado na dose de 1 SMP (PI-inc. O solo foi amostrado nas camadas de 0-5; 5-10; 10-20cm para análise de Ca2+, Mg+2, Al3+, pH em água e em CaCl2; e de 0-10cm para carbono orgânico total e fauna do solo. A aplicação superficial de calcário no sistema de semeadura direta na maior dose (1/2 SMP elevou os teores de Ca2+ até 10cm de profundidade e de Mg+2 até a camada de 10 a 20cm. A abundância e a diversidade da fauna edáfica foram maiores nas áreas sob semeadura direta e pastagem, em relação ao solo sem cultivo, mostrando sensibilidade às alterações advindas do manejo do solo, mas sem correlação direta com as modificações químicas decorrentes da calagem.This research was aimed at evaluating the effect of liming and its influence on chemistry and fauna properties of a Cambisol under no-tillage system. The experiment has been carried out in Lages, SC, southern Brazil, since May 2001. The treatments were: no-tillage with incorporated lime in the rate of 1 SMP (NT-inc; superficial liming in the rate of 1/5 SMP (NT-1/5sup, and 1/2 SMP (NT-1/2sup. As control treatment, bare soil without cultivation without lime application (BS, and plots with perennial pasture with incorporate lime in the rate of 1 SMP (Pp-inc were used. Soil samples were collected in the layers of 0-5; 5-10; 10-20cm depth for analysis of Ca2+, Mg+2, Al3+, water and CaCl2 pH. Total organic carbon and soil fauna were analysed in the layer 0-10cm. The superficial

Fluoride concentrations in soils, vegetation samples and soil fauna in the direct vicinity of a pollution source

International Nuclear Information System (INIS)

Vogel, J.; Ottow, J.C.G.; Breimer, R.F.

1989-01-01

Fluoride analyses CF t = total F; F w = water soluble F and F HCI HCI-extractable F) of different soils, vegetation samples and soil fauna (Helix pomatia, Lumbricus spp., arthropodes) in a locally polluted area (for nearly 65 years) clearly revealed an F-accumulation in top soil, vegetation and animals. Based on 1N HCI-extractable fluoride, two contamination zones around the emitting industry could be identified. In the calcareous soils, leaching of fluoride seems to be insignificant because of a strong immobilization as CaF 2 . A highly significant correlation between the F HCI content of soils and Lumbricus spp. (with and without gut content) or Helix pomatia shells was found. Fluoride concentrations in washed leaves of Hedera helix and in decaying grass reached levels of 306 and 997 μgF/g respectively. Saprophagous soil arthropods contained high fluoride levels, up to 732 μgF/g in Armadillidium vulgare. (orig.)

Environmental factors at different spatial scales governing soil fauna community patterns in fragmented forests.

NARCIS (Netherlands)

Martins da Silva, P.; Berg, M.P.; Serrano, A.R.M.; Dubs, F.; Sousa, J.P.

2012-01-01

Spatial and temporal changes in community structure of soil organisms may result from a myriad of processes operating at a hierarchy of spatial scales, from small-scale habitat conditions to species movements among patches and large-sale landscape features. To disentangle the relative importance of

Is the effect of trees on soil properties mediated by soil fauna? A case study from post-mining sites

Czech Academy of Sciences Publication Activity Database

Frouz, J.; Livečková, M.; Albrechtová, J.; Chroňáková, Alica; Cajthaml, Tomáš; Pižl, Václav; Háněl, Ladislav; Starý, Josef; Baldrian, Petr; Lhotáková, Z.; Šimáčková, H.; Cepáková, Šárka

2013-01-01

Roč. 309, December (2013), s. 87-95 ISSN 0378-1127 R&D Projects: GA ČR GAP504/12/1288; GA MŠk LC06066 Institutional support: RVO:60077344 ; RVO:61388971 Keywords : bioturbation * earthworms * foliage chemistry * microorganisms * reclamation * soil fauna Subject RIV: EH - Ecology, Behaviour Impact factor: 2.667, year: 2013

Soil fauna and leaf species, but not species diversity, affect initial soil erosion in a subtropical forest plantation

Science.gov (United States)

Seitz, Steffen; Goebes, Philipp; Assmann, Thorsten; Schuldt, Andreas; Scholten, Thomas

2017-04-01

litter layer was influenced by the presence (or absence) of soil meso- and macrofauna. Fauna presence increased soil erosion rates significantly by 58 %. It was assumed that this faunal effect arose from arthropods loosening and processing the soil surface as well as fragmenting and decomposing the protecting leaf litter covers. Thus, effects of this fauna group on sediment discharge have to be considered in soil erosion experiments.

Repeated Raking of Pine Plantations Alters Soil Arthropod Communities

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Holly K. Ober

2014-04-01

Full Text Available Terrestrial arthropods in forests are engaged in vital ecosystem functions that ultimately help maintain soil productivity. Repeated disturbance can cause abrupt and irreversible changes in arthropod community composition and thereby alter trophic interactions among soil fauna. An increasingly popular means of generating income from pine plantations in the Southeastern U.S. is annual raking to collect pine litter. We raked litter once per year for three consecutive years in the pine plantations of three different species (loblolly, Pinus taeda; longleaf, P. palustris; and slash, P. elliottii. We sampled arthropods quarterly for three years in raked and un-raked pine stands to assess temporal shifts in abundance among dominant orders of arthropods. Effects varied greatly among orders of arthropods, among timber types, and among years. Distinct trends over time were apparent among orders that occupied both high trophic positions (predators and low trophic positions (fungivores, detritivores. Multivariate analyses demonstrated that raking caused stronger shifts in arthropod community composition in longleaf and loblolly than slash pine stands. Results highlight the role of pine litter in shaping terrestrial arthropod communities, and imply that repeated removal of pine straw during consecutive years is likely to have unintended consequences on arthropod communities that exacerbate over time.

Development of metabarcoding for tracking changes of soil fauna community under stress by application of ash

DEFF Research Database (Denmark)

Qin, J; de Groot, G.A.; Hansen, L. H.

Ash is a waste product from combustion of bio-fuel in power plants. Application of ash on soil ensures nutrient recycling, but detrimental ecotoxicological consequences may arise since ash is a complex mixture that may contain compounds affecting soil invertebrates and their food and habitat...... and species. DNA metabarcoding, which couples the principle of DNA barcoding with next generation sequencing technology, has the potential to simplify community diversity monitoring. However, sampling and DNA extraction methods for the purpose of soil microarthropod metabarcoding have not been yet fully...

Insect fauna in soil at different grassland ecosystems at Sobral, state of Ceará, Brazil

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Gislane dos Santos Sousa

2013-02-01

Full Text Available The aim of this study was perform a surveillance of the insect fauna in soil in three grassland ecosystems of experimental farm Vale do Acaraú of Universidade Estadual Vale do Acaraú at Sobral, state of Ceará, Brazil, by the using of traps soil, with fortnightly collections, from March 2011 to February 2012. To characterize the insect fauna established a distribution pattern, whereas the rates of occurrence and dominance of species grouped by order, as an indicator of the frequency and the occurrence of the amount of captured. At the end, we collected and identified a total of 17,008 specimens of insects belonging to 11 orders, namely: Blattariae, Coleoptera, Dermaptera, Diptera, Hemiptera, Hymenoptera, Isoptera, Lepidoptera, Odonata, Orthoptera and Mantodea. The Order Hymenoptera was the one that stood out the largest number of individuals captured, attributing the presence of large amount of ants, are still considered common to the three ecosystems studied, according to the method employed.

Influence of mineral fertilization on edaphic fauna in Acacia auriculiformis (A. Cunn plantations

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Liliana Parente Ribeiro

2014-02-01

Full Text Available Fertilization and/or the accumulation of organic matter from plant residues can influence the composition of soil and litter community. The goal of this study was to evaluate the effects of P and K fertilization on total faunal and nematode faunal composition and richness in plant litter and soil for 360 days in an area reforested with Acacia auriculiformis (A. Cunn, located in the municipality of Conceição de Macabu in the State of Rio de Janeiro. For each treatment (fertilized and unfertilized plots, samples of litter and soil (to a depth of 5 cm were collected and transferred into a Berlese-Tüllgren funnels for the extraction of fauna. Mesofauna and macrofauna were quantified, and the major taxa identified. Nematodes were extracted by centrifugal flotation in sucrose solution and identified according to feeding habits. Density (number of individuals m-2 of total fauna, microphages, social insects and saprophages varied significantly per treatment and sampling time in both litter and soil. The total number of individuals collected was 5,127, and the total number of nematodes 894. Phosphorus and potassium fertilization resulted in an increase in total fauna density and richness in the litter due to an increased abundance of social insects, saprophages and herbivores. In the soil, fertilization increased the saprophage and predator densities. Saprophages were the predominant taxa in the litter, while social insects (Formicidae prevailed in the soil. Litter nematode populations were favored by mineral fertilization. Bacteriophages were the predominant nematode group in both litter and soil.

Evaluation of hydrologic processes affecting soil movement in the Hagerman fauna area, Hagerman, Idaho

Science.gov (United States)

Young, H.W.

1984-01-01

The Hagerman fauna area on the western slope of the Snake River canyon in south-central Idaho is one of the most important locations of upper Pliocene fossils in the world. The fossil beds are distributed vertically through a 500-foot stratigraphic section of the Glenns Ferry Formation. Accelerated soil movement caused by surface-water runoff from irrigated farmlands on the plateau above the canyon and discharge from springs and seeps along the slope of the canyon is eroding the fossil beds. Source of the springs and seeps is a perched aquifer, which is probably recharged by seepage losses from two irrigation canals that head near the canyon rim. Annual canal losses are about 1,900 acre-feet. Annual discharge from springs and seeps is about 420 acre-feet. Corrective measures that could be taken to stabilize the soil movement and preserve the fauna area include: (1) Lining or treating the canals, (2) eliminating the practice of flushing irrigation systems, (3) constructing road berms and cross dips, and (4) establishing an uncultivated strip of land between irrigated farmlands and the canyon rim. (USGS)

[Characteristics of ground-dwelling soil macro-arthropod communities in a biodiversity monitoring plot of black soil cropland, northeastern China].

Science.gov (United States)

Liu, Jie; Gao, Mie Xiang; Wu, Dong Hui

2017-12-01

changed. It was indicated that biodiversity plot monitoring of black soil cropland had become important means to solve the formation and maintenance mechanism of soil fauna community through large-scale and long-term investigation.

Characterization of soil fauna under the influence of mercury atmospheric deposition in Atlantic Forest, Rio de Janeiro, Brazil.

Science.gov (United States)

Buch, Andressa Cristhy; Correia, Maria Elizabeth Fernandes; Teixeira, Daniel Cabral; Silva-Filho, Emmanoel Vieira

2015-06-01

The increasing levels of mercury (Hg) found in the atmosphere arising from anthropogenic sources, have been the object of great concern in the past two decades in industrialized countries. Brazil is the seventh country with the highest rate of mercury in the atmosphere. The major input of Hg to ecosystems is through atmospheric deposition (wet and dry), being transported in the atmosphere over large distances. The forest biomes are of strong importance in the atmosphere/soil cycling of elemental Hg through foliar uptake and subsequent transference to the soil through litter, playing an important role as sink of this element. Soil microarthropods are keys to understanding the soil ecosystem, and for such purpose were characterized by the soil fauna of two Units of Forest Conservation of the state of the Rio de Janeiro, inwhich one of the areas suffer quite interference from petrochemicals and industrial anthropogenic activities and other area almost exempts of these perturbations. The results showed that soil and litter of the Atlantic Forest in Brazil tend to stock high mercury concentrations, which could affect the abundance and richness of soil fauna, endangering its biodiversity and thereby the functioning of ecosystems. Copyright © 2015. Published by Elsevier B.V.

[Effect of the soil contamination with a potato cyst-forming nematode on the community structure of soil-inhabiting nematodes].

Science.gov (United States)

Gruzdeva, L I; Suzhchuk, A A

2008-01-01

Nematode community structure of the potato fields with different infection levels of potato cyst-forming nematode (PCN) such as 10, 30 and 214 cysts per 100 g of soil has been investigated. The influence of specialized parasite on nematode fauna and dominance character of different ecological-trophic groups were described. Parasitic nematode genera in natural meadow biocenosis and agrocenoses without PCN are Paratylenchus, Tylenchorhynchus, and Helicotylenchus. It is established, that Paratylenchus nanus was the prevalent species among plant parasites at low infection level. Larvae of Globodera prevailed in the soil with middle and high infection levels and substituted individuals of other genera of parasitic nematodes. The fact of increase in number of hyphal-feeding nematode Aphelenchus avenae was revealed.

Elevated CO2 and O3t concentrations differentially affect selected groups of the fauna in temperate forest soils

Science.gov (United States)

Gladys I. Loranger; Kurt S. Pregitzer; John S. King

2004-01-01

Rising atmospheric CO2 concentrations may change soil fauna abundance. How increase of tropospheric ozone (O3t) concentration will modify these responses is still unknown. We have assessed independent and interactive effects of elevated [CO2] and [O3t] on selected groups of soil...

Contribution of Soil Fauna to Foliar Litter-Mass Loss in Winter in an Ecotone between Dry Valley and Montane Forest in the Upper Reaches of the Minjiang River.

Science.gov (United States)

Peng, Yan; Yang, Wanqin; Li, Jun; Wang, Bin; Zhang, Chuan; Yue, Kai; Wu, Fuzhong

2015-01-01

Litter decomposition during winter can provide essential nutrients for plant growth in the subsequent growing season, which plays important role in preventing the expansion of dry areas and maintaining the stability of ecotone ecosystems. However, limited information is currently available on the contributions of soil fauna to litter decomposition during winter in such ecosystems. Therefore, a field experiment that included litterbags with two different mesh sizes (0.04 mm and 3 mm) was conducted to investigate the contribution of soil fauna to the loss of foliar litter mass in winter from November 2013 to April 2014 along the upper reaches of the Minjiang River. Two litter types of the dominant species were selected in each ecosystem: cypress (Cupressus chengiana) and oak (Quercus baronii) in ecotone; cypress (Cupressus chengiana) and clovershrub (Campylotropis macrocarpa) in dry valley; and fir (Abies faxoniana) and birch (Betula albosinensis) in montane forest. Over one winter incubation, foliar litter lost 6.0%-16.1%, 11.4%-26.0%, and 6.4%-8.5% of initial mass in the ecotone, dry valley and montane forest, respectively. Soil fauna showed obvious contributions to the loss of foliar litter mass in all of the ecosystems. The highest contribution (48.5%-56.8%) was observed in the ecotone, and the lowest contribution (0.4%-25.8%) was observed in the montane forest. Compared with other winter periods, thawing period exhibited higher soil fauna contributions to litter mass loss in ecotone and dry valley, but both thawing period and freezing period displayed higher soil fauna contributions in montane forest. Statistical analysis demonstrated that the contribution of soil fauna was significantly correlated with temperature and soil moisture during the winter-long incubation. These results suggest that temperature might be the primary control factor in foliar litter decomposition, but more active soil fauna in the ecotone could contribute more in litter decomposition and

Contribution of Soil Fauna to Foliar Litter-Mass Loss in Winter in an Ecotone between Dry Valley and Montane Forest in the Upper Reaches of the Minjiang River.

Directory of Open Access Journals (Sweden)

Yan Peng

Full Text Available Litter decomposition during winter can provide essential nutrients for plant growth in the subsequent growing season, which plays important role in preventing the expansion of dry areas and maintaining the stability of ecotone ecosystems. However, limited information is currently available on the contributions of soil fauna to litter decomposition during winter in such ecosystems. Therefore, a field experiment that included litterbags with two different mesh sizes (0.04 mm and 3 mm was conducted to investigate the contribution of soil fauna to the loss of foliar litter mass in winter from November 2013 to April 2014 along the upper reaches of the Minjiang River. Two litter types of the dominant species were selected in each ecosystem: cypress (Cupressus chengiana and oak (Quercus baronii in ecotone; cypress (Cupressus chengiana and clovershrub (Campylotropis macrocarpa in dry valley; and fir (Abies faxoniana and birch (Betula albosinensis in montane forest. Over one winter incubation, foliar litter lost 6.0%-16.1%, 11.4%-26.0%, and 6.4%-8.5% of initial mass in the ecotone, dry valley and montane forest, respectively. Soil fauna showed obvious contributions to the loss of foliar litter mass in all of the ecosystems. The highest contribution (48.5%-56.8% was observed in the ecotone, and the lowest contribution (0.4%-25.8% was observed in the montane forest. Compared with other winter periods, thawing period exhibited higher soil fauna contributions to litter mass loss in ecotone and dry valley, but both thawing period and freezing period displayed higher soil fauna contributions in montane forest. Statistical analysis demonstrated that the contribution of soil fauna was significantly correlated with temperature and soil moisture during the winter-long incubation. These results suggest that temperature might be the primary control factor in foliar litter decomposition, but more active soil fauna in the ecotone could contribute more in litter

[Effects of canopy density on the functional group of soil macro fauna in Pinus massoniana plantations].

Science.gov (United States)

Zhou, Hong Yang; Zhang, Dan Ju; Zhang, Jie; Zhao, Yan Bo; Zhao, Bo; Wei, Da Ping; Zhang, Jian

2017-06-18

In order to understand the effects of canopy density on the functional group characteristics of soil macrofauna in Pinus massoniana plantations, we divided the captured soil fauna into five types including xylophages, predators, saprophages, omnivores and fungal feeders. The results showed that 1) Saprozoic feeders had the highest percentage of total individuals, and the omnivores and xylophages occupied higher percentages of total taxa. 2) The individual and group number of the predators, and the group number of xylophages did not change significantly under 0.5-0.6 and then decreased significantly under 0.6-0.9 canopy density. 3) With the increasing canopy density, the individual an dgroup number of predators in litter layer decreased significantly, the saprozoic individual number in 5-10 cm soil layer represented irregular trends. The individual number of xylophage increased with the depth of soil, and the group number in litter layer, the individual and group number in 5-10 cm soil layer decreased significantly. 4) Pielou evenness of xylophage had no significant changes with the canopy density, all the other diversity index of xylophage and saprophage were various with the increasing canopy density. The predatory Simpson index was stable under 0.5-0.8, and then decreased significantly under 0.8-0.9 canopy density. 5) The CCA (canonical correlation analysis) indicated that soil bulk density and moisture content were the main environmental factors affecting functional groups of soil macro fauna. Moisture content greatly impacted on the number of saprophagous individuals. But xylophage and predators were mostly affected by soil bulk density, and the predatory Simpson index was mainly affected by soil pH value and total phosphorus. Our research indicated that the structure of soil macro faunal functional group under 0.7 canopy density was comparatively stable, which would facilitate the maintenance of soil fertility and ecological function in Pinus massoniana

Análise multivariada da fauna edáfica em diferentes sistemas de preparo e cultivo do solo Multivariate analysis of soil fauna under different soil tillage and crop management systems

Directory of Open Access Journals (Sweden)

Dilmar Baretta

2006-11-01

Full Text Available O objetivo deste trabalho foi avaliar o efeito de sistemas de preparo e cultivo do solo sobre a diversidade de animais da fauna edáfica, por meio de técnicas de análise multivariada. Na análise canônica discriminante, os preparos conservacionistas com sucessão de culturas foram separados em relação aos tratamentos com rotação de culturas. Os grupos Acarina, Hymenoptera, Isopoda e Collembola, e o índice de Shannon (H foram os atributos que mais contribuíram para separar os tratamentos. A análise de correspondência mostrou forte associação dos grupos Acarina e Hymenoptera com o tratamento semeadura direta com sucessão de culturas, e do grupo Collembola com o preparo convencional.The objective of this work was to evaluate the effect of different soil tillage and crop management systems on soil fauna groups, by means of multivariate analysis. In the canonical discriminant analysis the conservation soil management systems with crop succession were discriminated in relation to other treatments with crop rotation. The groups Acarina, Hymenoptera, Isopoda, and Collembola, and the Shannon index (H showed the highest contribution for the discrimination between treatments. The correspondence analysis showed a strong association between Acarina and Hymenoptera groups with the treatment no-tillage with crop succession, and between Collembola group with the conventional tillage system.

How ecosystems change following invasion by Robinia pseudoacacia: Insights from soil chemical properties and soil microbial, nematode, microarthropod and plant communities.

Science.gov (United States)

Lazzaro, Lorenzo; Mazza, Giuseppe; d'Errico, Giada; Fabiani, Arturo; Giuliani, Claudia; Inghilesi, Alberto F; Lagomarsino, Alessandra; Landi, Silvia; Lastrucci, Lorenzo; Pastorelli, Roberta; Roversi, Pio Federico; Torrini, Giulia; Tricarico, Elena; Foggi, Bruno

2018-05-01

Biological invasions are a global threat to biodiversity. Since the spread of invasive alien plants may have many impacts, an integrated approach, assessing effects across various ecosystem components, is needed for a correct understanding of the invasion process and its consequences. The nitrogen-fixing tree Robinia pseudoacacia (black locust) is a major invasive species worldwide and is used in forestry production. While its effects on plant communities and soils are well known, there have been few studies on soil fauna and microbes. We investigated the impacts of the tree on several ecosystem components, using a multi-trophic approach to combine evidence of soil chemical properties and soil microbial, nematode, microarthropod and plant communities. We sampled soil and vegetation in managed forests, comparing those dominated by black locust with native deciduous oak stands. We found qualitative and quantitative changes in all components analysed, such as the well-known soil nitrification and acidification in stands invaded by black locust. Bacterial richness was the only component favoured by the invasion. On the contrary, abundance and richness of microarthropods, richness of nematodes, and richness and diversity of plant communities decreased significantly in invaded stands. The invasion process caused a compositional shift in all studied biotic communities and in relationships between the different ecosystem components. We obtained clear insights into the effects of invasion of managed native forests by black locust. Our data confirms that the alien species transforms several ecosystem components, modifying the plant-soil community and affecting biodiversity at different levels. Correct management of this aggressive invader in temperate forests is urgently required. Copyright © 2017 Elsevier B.V. All rights reserved.

Intensive agriculture reduces soil biodiversity across Europe.

Science.gov (United States)

Tsiafouli, Maria A; Thébault, Elisa; Sgardelis, Stefanos P; de Ruiter, Peter C; van der Putten, Wim H; Birkhofer, Klaus; Hemerik, Lia; de Vries, Franciska T; Bardgett, Richard D; Brady, Mark Vincent; Bjornlund, Lisa; Jørgensen, Helene Bracht; Christensen, Sören; Hertefeldt, Tina D'; Hotes, Stefan; Gera Hol, W H; Frouz, Jan; Liiri, Mira; Mortimer, Simon R; Setälä, Heikki; Tzanopoulos, Joseph; Uteseny, Karoline; Pižl, Václav; Stary, Josef; Wolters, Volkmar; Hedlund, Katarina

2015-02-01

Soil biodiversity plays a key role in regulating the processes that underpin the delivery of ecosystem goods and services in terrestrial ecosystems. Agricultural intensification is known to change the diversity of individual groups of soil biota, but less is known about how intensification affects biodiversity of the soil food web as a whole, and whether or not these effects may be generalized across regions. We examined biodiversity in soil food webs from grasslands, extensive, and intensive rotations in four agricultural regions across Europe: in Sweden, the UK, the Czech Republic and Greece. Effects of land-use intensity were quantified based on structure and diversity among functional groups in the soil food web, as well as on community-weighted mean body mass of soil fauna. We also elucidate land-use intensity effects on diversity of taxonomic units within taxonomic groups of soil fauna. We found that between regions soil food web diversity measures were variable, but that increasing land-use intensity caused highly consistent responses. In particular, land-use intensification reduced the complexity in the soil food webs, as well as the community-weighted mean body mass of soil fauna. In all regions across Europe, species richness of earthworms, Collembolans, and oribatid mites was negatively affected by increased land-use intensity. The taxonomic distinctness, which is a measure of taxonomic relatedness of species in a community that is independent of species richness, was also reduced by land-use intensification. We conclude that intensive agriculture reduces soil biodiversity, making soil food webs less diverse and composed of smaller bodied organisms. Land-use intensification results in fewer functional groups of soil biota with fewer and taxonomically more closely related species. We discuss how these changes in soil biodiversity due to land-use intensification may threaten the functioning of soil in agricultural production systems. © 2014 John Wiley

Effect of brushwood transposition on the leaf litter arthropod fauna in a cerrado area

Directory of Open Access Journals (Sweden)

Paula Cristina Benetton Vergílio

2013-10-01

Full Text Available The results of ecological restoration techniques can be monitored through biological indicators of soil quality such as the leaf litter arthropod fauna. This study aimed to determine the immediate effect of brushwood transposition transferred from an area of native vegetation to a disturbed area, on the leaf litter arthropod fauna in a degraded cerrado area. The arthropod fauna of four areas was compared: a degraded area with signal grass, two experimental brushwood transposition areas, with and without castor oil plants, and an area of native cerrado. In total, 7,660 individuals belonging to 23 taxa were sampled. Acari and Collembola were the most abundant taxa in all studied areas, followed by Coleoptera, Diptera, Hemiptera, Hymenoptera, and Symphyla. The brushwood transposition area without castor oil plants had the lowest abundance and dominance and the highest diversity of all areas, providing evidence of changes in the soil community. Conversely, the results showed that the presence of castor oil plants hampered early succession, negatively affecting ecological restoration in this area.

Seasonal exposure to drought and air warming affects soil Collembola and mites.

Directory of Open Access Journals (Sweden)

Guo-Liang Xu

Full Text Available Global environmental changes affect not only the aboveground but also the belowground components of ecosystems. The effects of seasonal drought and air warming on the genus level richness of Collembola, and on the abundance and biomass of the community of Collembola and mites were studied in an acidic and a calcareous forest soil in a model oak-ecosystem experiment (the Querco experiment at the Swiss Federal Research Institute WSL in Birmensdorf. The experiment included four climate treatments: control, drought with a 60% reduction in rainfall, air warming with a seasonal temperature increase of 1.4 °C, and air warming + drought. Soil water content was greatly reduced by drought. Soil surface temperature was slightly increased by both the air warming and the drought treatment. Soil mesofauna samples were taken at the end of the first experimental year. Drought was found to increase the abundance of the microarthropod fauna, but reduce the biomass of the community. The percentage of small mites (body length ≤ 0.20 mm increased, but the percentage of large mites (body length >0.40 mm decreased under drought. Air warming had only minor effects on the fauna. All climate treatments significantly reduced the richness of Collembola and the biomass of Collembola and mites in acidic soil, but not in calcareous soil. Drought appeared to have a negative impact on soil microarthropod fauna, but the effects of climate change on soil fauna may vary with the soil type.

Seasonal Exposure to Drought and Air Warming Affects Soil Collembola and Mites

Science.gov (United States)

Xu, Guo-Liang; Kuster, Thomas M.; Günthardt-Goerg, Madeleine S.; Dobbertin, Matthias; Li, Mai-He

2012-01-01

Global environmental changes affect not only the aboveground but also the belowground components of ecosystems. The effects of seasonal drought and air warming on the genus level richness of Collembola, and on the abundance and biomass of the community of Collembola and mites were studied in an acidic and a calcareous forest soil in a model oak-ecosystem experiment (the Querco experiment) at the Swiss Federal Research Institute WSL in Birmensdorf. The experiment included four climate treatments: control, drought with a 60% reduction in rainfall, air warming with a seasonal temperature increase of 1.4°C, and air warming + drought. Soil water content was greatly reduced by drought. Soil surface temperature was slightly increased by both the air warming and the drought treatment. Soil mesofauna samples were taken at the end of the first experimental year. Drought was found to increase the abundance of the microarthropod fauna, but reduce the biomass of the community. The percentage of small mites (body length 0.20 mm) increased, but the percentage of large mites (body length >0.40 mm) decreased under drought. Air warming had only minor effects on the fauna. All climate treatments significantly reduced the richness of Collembola and the biomass of Collembola and mites in acidic soil, but not in calcareous soil. Drought appeared to have a negative impact on soil microarthropod fauna, but the effects of climate change on soil fauna may vary with the soil type. PMID:22905210

Seasonal exposure to drought and air warming affects soil Collembola and mites.

Science.gov (United States)

Xu, Guo-Liang; Kuster, Thomas M; Günthardt-Goerg, Madeleine S; Dobbertin, Matthias; Li, Mai-He

2012-01-01

Global environmental changes affect not only the aboveground but also the belowground components of ecosystems. The effects of seasonal drought and air warming on the genus level richness of Collembola, and on the abundance and biomass of the community of Collembola and mites were studied in an acidic and a calcareous forest soil in a model oak-ecosystem experiment (the Querco experiment) at the Swiss Federal Research Institute WSL in Birmensdorf. The experiment included four climate treatments: control, drought with a 60% reduction in rainfall, air warming with a seasonal temperature increase of 1.4 °C, and air warming + drought. Soil water content was greatly reduced by drought. Soil surface temperature was slightly increased by both the air warming and the drought treatment. Soil mesofauna samples were taken at the end of the first experimental year. Drought was found to increase the abundance of the microarthropod fauna, but reduce the biomass of the community. The percentage of small mites (body length ≤ 0.20 mm) increased, but the percentage of large mites (body length >0.40 mm) decreased under drought. Air warming had only minor effects on the fauna. All climate treatments significantly reduced the richness of Collembola and the biomass of Collembola and mites in acidic soil, but not in calcareous soil. Drought appeared to have a negative impact on soil microarthropod fauna, but the effects of climate change on soil fauna may vary with the soil type.

Bacterial Communities in Malagasy Soils with Differing Levels of Disturbance Affecting Botanical Diversity

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Blasiak, Leah C.; Schmidt, Alex W.; Andriamiarinoro, Honoré; Mulaw, Temesgen; Rasolomampianina, Rado; Applequist, Wendy L.; Birkinshaw, Chris; Rejo-Fienena, Félicitée; Lowry, Porter P.; Schmidt, Thomas M.; Hill, Russell T.

2014-01-01

Madagascar is well-known for the exceptional biodiversity of its macro-flora and fauna, but the biodiversity of Malagasy microbial communities remains relatively unexplored. Understanding patterns of bacterial diversity in soil and their correlations with above-ground botanical diversity could influence conservation planning as well as sampling strategies to maximize access to bacterially derived natural products. We present the first detailed description of Malagasy soil bacterial communities from a targeted 16S rRNA gene survey of greater than 290,000 sequences generated using 454 pyrosequencing. Two sampling plots in each of three forest conservation areas were established to represent different levels of disturbance resulting from human impact through agriculture and selective exploitation of trees, as well as from natural impacts of cyclones. In parallel, we performed an in-depth characterization of the total vascular plant morphospecies richness within each plot. The plots representing different levels of disturbance within each forest did not differ significantly in bacterial diversity or richness. Changes in bacterial community composition were largest between forests rather than between different levels of impact within a forest. The largest difference in bacterial community composition with disturbance was observed at the Vohibe forest conservation area, and this difference was correlated with changes in both vascular plant richness and soil pH. These results provide the first survey of Malagasy soil bacterial diversity and establish a baseline of botanical diversity within important conservation areas. PMID:24465484

Cenozoic Methane-Seep Faunas of the Caribbean Region.

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Steffen Kiel

Full Text Available We report new examples of Cenozoic cold-seep communities from Colombia, Cuba, the Dominican Republic, Trinidad, and Venezuela, and attempt to improve the stratigraphic dating of Cenozoic Caribbean seep communities using strontium isotope stratigraphy. Two seep faunas are distinguished in Barbados: the late Eocene mudstone-hosted 'Joes River fauna' consists mainly of large lucinid bivalves and tall abyssochrysoid gastropods, and the early Miocene carbonate-hosted 'Bath Cliffs fauna' containing the vesicomyid Pleurophopsis, the mytilid Bathymodiolus and small gastropods. Two new Oligocene seep communities from the Sinú River basin in Colombia consist of lucinid bivalves including Elongatolucina, thyasirid and solemyid bivalves, and Pleurophopsis. A new early Miocene seep community from Cuba includes Pleurophopsis and the large lucinid Meganodontia. Strontium isotope stratigraphy suggests an Eocene age for the Cuban Elmira asphalt mine seep community, making it the oldest in the Caribbean region. A new basal Pliocene seep fauna from the Dominican Republic is characterized by the large lucinid Anodontia (Pegophysema. In Trinidad we distinguish two types of seep faunas: the mudstone-hosted Godineau River fauna consisting mainly of lucinid bivalves, and the limestone-hosted Freeman's Bay fauna consisting chiefly of Pleurophopsis, Bathymodiolus, and small gastropods; they are all dated as late Miocene. Four new seep communities of Oligocene to Miocene age are reported from Venezuela. They consist mainly of large globular lucinid bivalves including Meganodontia, and moderately sized vesicomyid bivalves. After the late Miocene many large and typical 'Cenozoic' lucinid genera disappeared from the Caribbean seeps and are today known only from the central Indo-Pacific Ocean. We speculate that the increasingly oligotrophic conditions in the Caribbean Sea after the closure of the Isthmus of Panama in the Pliocene may have been unfavorable for such large

The role of topographic structure and soil macrofauna presence at spoil heaps during spontaneous succession.

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Walmsley, Alena; Vachová, Pavla; Vach, Marek

2016-04-01

This research was investigating whether topographic features, which determine soil nutrient and moisture distribution, in combination with soil fauna (wireworm and earthworm) presence, affect plant community composition at a spontaneously revegetated post mining area with an undulating surface. Two sites of different age with 3 types of topographic features were selected, soil moisture and nutrient content were measured, plant community composition and soil macrofauna community was sampled at each position. Wireworms were present at all positions and were most abundant at bottoms of waves at the younger site; their presence was correlated with several plant species, but the direction of the interaction isn't clear. Earthworms were only present at the older site and had highest abundance at flat sections. Earthworm presence affected the amount of nitrogen in soil - the most nitrogen content was at the site with highest earthworm density and was followed by higher diversity of plant community. The plant community composition was generally correlated with plant available nutrient content - especially P and N. We infer that topographic features affect nutrient and soil fauna distribution, which consequently influences plant community composition.

Edaphic fauna in a vegetation gradient in the Sete Cidades National Park.

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Nunes, L A P L; Araújo, A S F; Pessoa, M M C; Sousa, R S; Silva, J D C; Matos-Filho, C H A

2018-04-09

The vegetation physionomy and cover can show patterns of diversity and composition of the edaphic community, depending on the quantity and quality of litter in a specific habitat. The objective of this study was to evaluate the effect of the vegetation gradient formed by Graminoid Field (GRF), Cerrado Sensu Stricto (CSS), Cerradão (CRD) and Semideciduous Seasonal Forest (SSF) on density, diversity and composition of the edaphic fauna community in two seasons of the year, in the Sete Cidades National Park (Piauí state). For fauna sampling, a total of eight pitfall traps, distanced 10 m, were placed in each area in the central part of each system, where they remained for seven days. In the wet period, there was a tendency to increase the number of individuals as a function of the complexity of the vegetation formation, with the inverse occurring in the dry period. It was verified an environmental variation of the climatic factors temperature and humidity according to the vegetal formation, contributing to a heterogeneous distribution of the fauna. The GRF formation presented a significantly lower value of average richness only in the dry period. Regarding the variables of diversity and uniformity, they did not show drastic variations in relation to the vegetation gradient studied. The dominant groups in the vegetation gradient were Formicidae, Coleoptera, Aranae, Acari and Collembola, with reduction of the number of Coleoptera in the dry season. Principal component analysis (PCA) revealed greater differences in the composition of the communities between the vegetation formations for the rainy season. At this time, the formations SSF and CRD were associated to a greater diversity of invertebrates than CSS and GRF, demonstrating the influence of the vegetation complexity on the soil fauna community.

Edaphic fauna in a vegetation gradient in the Sete Cidades National Park

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L. A. P. L. Nunes

2018-04-01

Full Text Available Abstract The vegetation physionomy and cover can show patterns of diversity and composition of the edaphic community, depending on the quantity and quality of litter in a specific habitat. The objective of this study was to evaluate the effect of the vegetation gradient formed by Graminoid Field (GRF, Cerrado Sensu Stricto (CSS, Cerradão (CRD and Semideciduous Seasonal Forest (SSF on density, diversity and composition of the edaphic fauna community in two seasons of the year, in the Sete Cidades National Park (Piauí state. For fauna sampling, a total of eight pitfall traps, distanced 10 m, were placed in each area in the central part of each system, where they remained for seven days. In the wet period, there was a tendency to increase the number of individuals as a function of the complexity of the vegetation formation, with the inverse occurring in the dry period. It was verified an environmental variation of the climatic factors temperature and humidity according to the vegetal formation, contributing to a heterogeneous distribution of the fauna. The GRF formation presented a significantly lower value of average richness only in the dry period. Regarding the variables of diversity and uniformity, they did not show drastic variations in relation to the vegetation gradient studied. The dominant groups in the vegetation gradient were Formicidae, Coleoptera, Aranae, Acari and Collembola, with reduction of the number of Coleoptera in the dry season. Principal component analysis (PCA revealed greater differences in the composition of the communities between the vegetation formations for the rainy season. At this time, the formations SSF and CRD were associated to a greater diversity of invertebrates than CSS and GRF, demonstrating the influence of the vegetation complexity on the soil fauna community.

Biocontrol of the toxigenic plant pathogen Fusarium culmorum by soil fauna in an agroecosystem.

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Meyer-Wolfarth, Friederike; Schrader, Stefan; Oldenburg, Elisabeth; Weinert, Joachim; Brunotte, Joachim

2017-08-01

In 2011 and 2013, a field experiment was conducted in a winter wheat field at Adenstedt (northern Germany) to investigate biocontrol and interaction effects of important members of the soil food web (Lumbricus terrestris, Annelida; Folsomia candida, Collembola and Aphelenchoides saprophilus, Nematoda) on the phytopathogenic fungus Fusarium culmorum in wheat straw. Therefore, soil fauna was introduced in mesocosms in defined numbers and combinations and exposed to either Fusarium-infected or non-infected wheat straw. L. terrestris was introduced in all faunal treatments and combined either with F. candida or A. saprophilus or both. Mesocosms filled with a Luvisol soil, a cover of different types of wheat straw and respective combinations of faunal species were established outdoors in the topsoil of a winter wheat field after harvest of the crop. After a time span of 4 and 8 weeks, the degree of wheat straw coverage of mesocosms was quantified to assess its attractiveness for the soil fauna. The content of Fusarium biomass in residual wheat straw and soil was determined using a double-antibody sandwich (DAS)-ELISA method. In both experimental years, the infected wheat straw was incorporated more efficiently into the soil than the non-infected control straw due to the presence of L. terrestris in all faunal treatments than the non-infected control straw. In addition, Fusarium biomass was reduced significantly in all treatments after 4 weeks (2011: 95-99%; 2013:15-54%), whereupon the decline of fungal biomass was higher in faunal treatments than in non-faunal treatments and differed significantly from them. In 2011, Fusarium biomass of the faunal treatments was below the quantification limit after 8 weeks. In 2013, a decline of Fusarium biomass was observed, but the highest content of Fusarium biomass was still found in the non-faunal treatments after 8 weeks. In the soil of all treatments, Fusarium biomass was below the quantification limit. The earthworm species

Spatial distribution patterns of soil mite communities and their relationships with edaphic factors in a 30-year tillage cornfield in northeast China.

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Liu, Jie; Gao, Meixiang; Liu, Jinwen; Guo, Yuxi; Liu, Dong; Zhu, Xinyu; Wu, Donghui

2018-01-01

Spatial distribution is an important topic in community ecology and a key to understanding the structure and dynamics of populations and communities. However, the available information related to the spatial patterns of soil mite communities in long-term tillage agroecosystems remains insufficient. In this study, we examined the spatial patterns of soil mite communities to explain the spatial relationships between soil mite communities and soil parameters. Soil fauna were sampled three times (August, September and October 2015) at 121 locations arranged regularly within a 400 m × 400 m monitoring plot. Additionally, we estimated the physical and chemical parameters of the same sampling locations. The distribution patterns of the soil mite community and the edaphic parameters were analyzed using a range of geostatistical tools. Moran's I coefficient showed that, during each sampling period, the total abundance of the soil mite communities and the abundance of the dominant mite populations were spatially autocorrelated. The soil mite communities demonstrated clear patchy distribution patterns within the study plot. These patterns were sampling period-specific. Cross-semivariograms showed both negative and positive cross-correlations between soil mite communities and environmental factors. Mantel tests showed a significant and positive relationship between soil mite community and soil organic matter and soil pH only in August. This study demonstrated that in the cornfield, the soil mite distribution exhibited strong or moderate spatial dependence, and the mites formed patches with sizes less than one hundred meters. In addition, in this long-term tillage agroecosystem, soil factors had less influence on the observed pattern of soil mite communities. Further experiments that take into account human activity and spatial factors should be performed to study the factors that drive the spatial distribution of soil microarthropods.

Influence of Soil Organic Matter Content on Abundance and Biomass of Earthworm (Oligochaeta: Lumbricidae Populations

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Hristo Valchovski

2016-06-01

Full Text Available The current study explores the influence of soil organic matter content on abundance and biomass of earthworm communities. The observation was carried out on three type of soils: PellicVertisols (very fine texture, Cromi-Vertic Luvisols (fine texture and Calcaric Fluvisols (mediumtexture from the Balkan Peninsula (Bulgaria. The field experiment was provided on uncultivatedplots. In the studied area earthworm fauna comprises of four species: Aporrectodea rosea,Aporrectodea caliginosa, Lumbricus terrestris and Octolasion lacteum. We found peregrine lumbricidtaxa, which are widely distributed in European soils. Our study demonstrated that soil organicmatter has a positive effect on lumbricid populations. It was revealed that augmentation of soilorganic matter favours characteristics of earthworm communities. The soil organic matter contentand earthworm abundance are in strong positive correlation (r > 0.981. The same relationship wasrevealed between the biomass of lumbricid fauna and amount of soil organic matter (r > 0.987. Insum, the soil organic matter could be used as an indicator for earthworm communities inuncultivated soils.

Initial contents of residue quality parameters predict effects of larger soil fauna on decomposition of contrasting quality residues

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Ratikorn Sanghaw

2017-10-01

Full Text Available A 52-week decomposition study employing the soil larger fauna exclusion technique through litter bags of two mesh sizes (20 and 0.135 mm was conducted in a long-term (18 yr field experiment. Organic residues of contrasting quality of N, lignin (L, polyphenols (PP and cellulose (CL all in grams per kilogram: rice straw (RS: 4.5N, 22.2L, 3.9PP, 449CL, groundnut stover (GN: 21.2N, 71.4L, 8.1PP, 361CL, dipterocarp leaf litter (DP: 5.1N, 303L, 68.9PP, 271CL and tamarind leaf litter (TM: 11.6N, 190L, 27.7PP, 212CL were applied to soil annually to assess and predict soil larger fauna effects (LFE on decomposition based on the initial contents of the residue chemical constituents. Mass losses in all residues were not different under soil fauna inclusion and exclusion treatments during the early stage (up to week 4 after residue incorporation but became significantly higher under the inclusion than the exclusion treatments during the later stage (week 8 onwards. LFE were highest (2–51% under the resistant DP at most decomposition stages. During the early stage (weeks 1–4, both the initial contents of labile (N and CL and recalcitrant C, and recalcitrant C interaction with labile constituents of residues showed significant correlations (r = 0.64–0.90 with LFE. In the middle stage (week 16, LFE under resistant DP and TM had significant positive correlations with L, L + PP and L/CL. They were also affected by these quality parameters as shown by the multiple regression analysis. In the later stages (weeks 26–52, the L/CL ratio was the most prominent quality parameter affecting LFE. Keywords: Mesofauna and macrofauna, Microorganisms, Recalcitrant and labile compounds, Residue chemical composition, Tropical sandy soil

Evaluation the impact of habitat quality on the soil fauna in Jajarm region

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G.A. Rassam

2016-04-01

Full Text Available The effects of land use, crop type and crop management on soil fauna were investigated with survey of four habitats in Jajarm. The habitats included rangelands, alfalfa (Medicago sativa L. fields and low-input and high-input of wheat (Triticum aestivum L. fields, each with four sample units. In each sample unit, the macrofauna collected with pitfall traps, sorted and counted in terms of family. The analysis of data conducted using of contrast analysis, analysis of similarities and principal component analysis (PCA. In rangelands the taxonomic richness, Simpson diversity index and abundance of macrofauna families tremendously were lower than agricultural habitats. These were attributed to low of plant diversity and pressure of livestock grazing. In alfalfa fields, increased abundance of beneficial macrofauna than wheat fields due to use not of chemical inputs, low disturbance and perennial of alfalfa. The crop management dad not has any significant impact on soil macrofauna. However, soil important macrofauna showed great tendency to occupancy in low-input wheat fields.

Soil macrofauna and litter nutrients in three tropical tree plantations on a disturbed site in Puerto Rico.

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Matthew W. Warren; Xiaoming Zou

2002-01-01

Tree plantations are increasingly common in tropical landscapes due to their multiple uses. Plantations vary in structure and composition, and these variations may alter soil fauna communities. Recent studies have demonstrated the important role of soil fauna in the regulation of plant litter decomposition in the tropics. However, little is known about how plantation...

Effects of agricultural practices of three crops on the soil communities under Mediterranean conditions: field evaluation.

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Leitão, Sara; José Cerejeira, Maria; Abreu, Manuela; Sousa, José Paulo

2014-05-01

Sustainable agricultural production relies on soil communities as the main actors in key soil processes necessary to maintain sustainable soil functioning. Soil biodiversity influences soil physical and chemical characteristics and thus the sustainability of crop and agro-ecosystems functioning. Agricultural practices (e.g.: soil tillage, pesticides and fertilizer applications, irrigation) may affects negatively or positively soil biodiversity and abundances by modifying the relationships between organisms in the soil ecosystem. The present study aimed to study the influence of agricultural practices of three crops (potato, onion and maize) under Mediterranean climate conditions on soil macro- and mesofauna during their entire crop cycles. Effects on soil communities were assessed at a higher tier of environmental risk assessment comprising field testing of indigenous edaphic communities in a selected study-site located in a major agriculture region of Central Portugal, Ribatejo e Oeste, neighbouring protected wetlands. A reference site near the agricultural field site was selected as a Control site to compare the terrestrial communities' composition and variation along the crop cycle. The field soil and Control site soil are sandy loam soils. Crops irrigation was performed by center-pivot (automated sprinkler that rotates in a half a circle area) and by sprinklers. Soil macro- and mesofauna were collected at both sites (field and Control) using two methodologies through pitfall trapping and soil sampling. The community of soil macro- and mesofauna of the three crops field varied versus control site along the crops cycles. Main differences were due to arachnids, coleopterans, ants and adult Diptera presence and abundance. The feeding activity of soil fauna between control site and crop areas varied only for potato and onion crops vs. control site but not among crops. Concentration of pesticides residues in soil did not cause apparent negative effects on the soil

Soil fauna responses to natural disturbances, invasive species, and global climate change: Current state of the science and a call to action

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David R. Coyle; Uma J. Nagendra; Melanie K. Taylor; J. Holly Campbell; Chelsea E. Cunard; Aaron H. Joslin; Abha Mundepi; Carly A. Phillips; Mac A. Callaham

2017-01-01

Environmental disturbances seem to be increasing in frequency and impact, yet we have little understanding of the belowground impacts of these events. Soil fauna, while widely acknowledged to be important drivers of biogeochemical function, soil structure and sustainability, and trophic interactions, are understudied compared to other belowground organisms such as...

THE ECONOMIC IMPORTANCE OF THE EPIGEAL FAUNA IN THE CORN AGRICULTURAL ECOSYSTEM IN OCNA SIBIU (SIBIU COUNTY IN 2012

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Iuliana ANTONIE

2013-12-01

Full Text Available The arthropods have the role of biologic indicators, of diagnosis instruments regarding the negative effects of the human intervention in the structure and functioning of the agricultural ecosystems. Their presence or absence, the growth or lowering of their populations in the agricultural ecosystems can indicate the state of health of these systems and their good functioning. The aim of our researches is establishing the fauna structure of the community of arthropods at the soil level in the corn agricultural ecosystem in Ocna Sibiu, (Sibiu County; the characterization of the communities of invertebrates under the aspect of numerical abundance and of that of relative one; framing the entomologic fauna into a beneficial or pest one, the identification of the culture technology for the researched area. Regarding the applied researched methods, they were as follows: the using of pitfall traps (Barber traps that were at the level of the soil as well as the method of direct collecting of the fauna from the plants. As a result of our researches there was established the taxonomic and quantitative structure of the collected fauna through the methods of pitfall traps (Barber traps in Ocna Sibiu during 2012; there were identified 13 taxonomic groups. From the total of the collected agricultural fauna gathered by the help of pitfall traps in Ocna Sibiu locality there were identified 51 species of insects from which 30 were beneficial ones and 21 pest ones, the dominating order being Coleopteron with 35 species. The establishment of the group of arthropods, especially of the entomologic fauna, beneficial or pest indicates the equilibrium or the disequilibrium state from the researched corn three field systems. The ratio between the two types of fauna permits choosing the optimum method of maintaining the equilibrium between the species of the system and applying those measures of management in order to affect less the system in its assembly and to

Soil biodiversity and soil community composition determine ecosystem multifunctionality

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Wagg, Cameron; Bender, S. Franz; Widmer, Franco; van der Heijden, Marcel G. A.

2014-01-01

Biodiversity loss has become a global concern as evidence accumulates that it will negatively affect ecosystem services on which society depends. So far, most studies have focused on the ecological consequences of above-ground biodiversity loss; yet a large part of Earth’s biodiversity is literally hidden below ground. Whether reductions of biodiversity in soil communities below ground have consequences for the overall performance of an ecosystem remains unresolved. It is important to investigate this in view of recent observations that soil biodiversity is declining and that soil communities are changing upon land use intensification. We established soil communities differing in composition and diversity and tested their impact on eight ecosystem functions in model grassland communities. We show that soil biodiversity loss and simplification of soil community composition impair multiple ecosystem functions, including plant diversity, decomposition, nutrient retention, and nutrient cycling. The average response of all measured ecosystem functions (ecosystem multifunctionality) exhibited a strong positive linear relationship to indicators of soil biodiversity, suggesting that soil community composition is a key factor in regulating ecosystem functioning. Our results indicate that changes in soil communities and the loss of soil biodiversity threaten ecosystem multifunctionality and sustainability. PMID:24639507

Multifractal analyis of soil invertebrates along a transect under different land uses

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Machado Siqueira, Glécio; Alves Silva, Raimunda; Vidal-Vázquez, Eva; Paz-González, Antonio

2017-04-01

Soil fauna play a central role in many essential ecosystem processes. Land use and management can have a dramatic effect upon soil invertebrate community. Indices based on soil invertebrates abundance and diversity are fundamental for soil quality assessment. Many soil properties and attributes have been shown to exhibit spatial variabilityThe aim of this study was to analyze the scaling heterogeneity of the soil invertebrate community sampled using pitfall traps across a transect. The field study was conducted at Mata Roma municipality, Maranhão State, Brazil. Transects were marked under seven different agricultural/forestry land uses (millet, soybean, maize, eucalyptus, pasture, secondary savannah and native savannah). Native vegetation was considered as a reference, whereas the agricultural fields showed a range of soil use intensities. Along these transects 130 pitfall per land use were installed. First, differences in community assemblages and composition under different land use systems were evaluated using classical indices. Then, the spatial distribution of soil fauna trapped by pitfall techniques, characterized through generalized dimension, Dq, and singularity spectra, f(α) - α, showed a well-defined multifractal structure. Differences in scaling heterogeneity and other multifractal characteristics were examined in relation to land use intensification.

Residue levels of molinate in rice field soil: their effects on populations of aquatic flora and fauna under recycling and non-recycling practices in the MUDA area

International Nuclear Information System (INIS)

Nashriyah Mat; Azimahtol Hawariah Lope Pihie

2002-01-01

A study to evaluate the effects of Molinate residue levels in rice field soil on populations of weed and aquatic fauna in the recycling and the non-recycling areas of Muda was carried out. Molinate residue levels in soil, Simpson Index of Diversity and Importance Value (IV) of weeds, and Sequential Comparison Index of aquatic fauna were measured. No marked variation between the recycled (B 111) and non-recycled (D 111) area was observed for the population parameters and residue levels measured. (Author)

Response of soil microbial and invertebrate communities to tracked vehicle disturbance in tallgrass prairie

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P.S. Althoff; T.C. Todd; S.J. Thien; M.A. Callaham

2009-01-01

Soil biota drive fundamental ecosystem processes such as decomposition, nutrient cycling, and maintenance of soil structure. They are especially active in grassland ecosystems such as the tallgrass by heterotrophic soil organisms. Because both soil microbes and soil fauna display perturbation responses that integrate the physical, chemical, and biological changes to...

Effects of soil water content on the external exposure of fauna to radioactive isotopes.

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Beaugelin-Seiller, K

2016-01-01

Within a recent model intercomparison about radiological risk assessment for contaminated wetlands, the influence of soil saturation conditions on external dose rates was evidenced. This issue joined concerns of assessors regarding the choice of the soil moisture value to input in radiological assessment tools such as the ERICA Tool. Does it really influence the assessment results and how? This question was investigated under IAEA's Modelling and Data for Radiological Impacts Assessments (MODARIA) programme via 42 scenarios for which the soil water content varied from 0 (dry soil) to 100% (saturated soil), in combination with other parameters that may influence the values of the external dose conversion coefficients (DCCs) calculated for terrestrial organisms exposed in soil. A set of α, β, and γ emitters was selected in order to cover the range of possible emission energies. The values of their external DCCs varied generally within a factor 1 to 1.5 with the soil water content, excepted for β emitters that appeared more sensitive (DCCs within a factor of about 3). This may be of importance for some specific cases or for upper tiers of radiological assessments, when refinement is required. But for the general purpose of screening assessment of radiological impact on fauna and flora, current approaches regarding the soil water content are relevant. Copyright © 2015 Elsevier Ltd. All rights reserved.

THE ECONOMIC IMPORTANCE OF THE BIODIVERSITY OF THE INVERTEBRATES FAUNA IN THE CORN CULTURE SOIL IN COPSA MICA (SIBIU COUNTY ROMANIA

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Iuliana ANTONIE

2014-10-01

Full Text Available The goal of our researches is in bringing the scientific arguments of the necessity of including the biologic parameters, mainly of the invertebrates in the soil, in the evaluation studies of the impact upon the environment and the national strategies of monitoring of the soils quality. If the chemical analysis measure the quantity of the polluters, the invertebrates in the soil, especially the insects, reflect intensively the anthropologic influences, emphasizing the intensifications or inhibitions of their activity under the stress conditions. The study upon the invertebrates’ fauna was carried on in Copsa Mica area (Sibiu County in the corn agricultural ecosystem. The properties of the soil in this area are strongly changed by the industrial activity as a result of an accumulation of great quantities of heavy metals (lead, cadmium. The researches in this area are a part of a greater study upon the invertebrates’ fauna in the corn culture soil of the Sibiu County, researches that took place during 2011-2013. The technology applied in this area is a semi intensive one. For collecting the invertebrates there were used two methods: drilling the soil and pitfall traps. There were identified invertebrates belonging to 4 classes (Annelida, Arachnida, Chilopoda, Insecta and 11 orders (Haplotaxida, Aranea, Acari, Lithobiomorpha, Geophilomorpha, Collembola, Orthoptera, Heteroptera, Hymenoptera, Coleoptera, Diptera.

Windstorms as mediator of soil nematode community changes: Evidence from European spruce forest

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Renčo M.

2017-03-01

Full Text Available Nematode communities in a Norway spruce forest in High Tatra National Park, Slovakia were monitored for the period of several years (2006 and 2013. Unfortunately, in May 2014 natural windstorm damaged the forest. This disastrous event, together with preliminary obtained results allowed us to compare the direct impact of windstorm damage of forest habitat on soil nematode assemblages. The forest destruction by windstorm had a significant effect on the total nematode abundance, the abundance of omnivores and herbivores, as well as the nematode species diversity. The most dominant species, representing 55 % of the total nematode fauna, in the plot studied were Acrobeloides nanus followed by Malenchus exiguus, Filenchus vulgaris, Plectus communis, Plectus parvus and Tylencholaimus mirabilis. The abundance of bacterivorous signifi cantly increased after the windstorm, meanwhile the abundance of omnivores, fungivores, and herbivores ectoparasites and epidermal/root hair feeders showed an opposite trend. Of the evaluative indicators, Shannon species diversity (H’spp, maturity index (MI, maturity index 2-5 (MI2-5, sigma maturity index (ΣMI, enrichment index (EI and structure index (SI decreased significantly after windstorm. The EI and SI indexes characterized soil ecosystems before windstorm (2006 - 2013 as maturing with low or moderate disturbance, but soil ecosystems shortly after the windstorm (2014 were degraded and nutrient depleted. This also corresponded with graphical display of metabolic footprints characteristics of soil food web. Overall, the nematode communities differed significantly before and after forest damage. These results suggest the role of nematode communities as indicators of environment condition quality or its disruption.

Effects of reforestation on ammonia-oxidizing microbial community composition and abundance in subtropical acidic forest soils.

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Wu, Ruo-Nan; Meng, Han; Wang, Yong-Feng; Gu, Ji-Dong

2018-06-01

Forest ecosystems have great ecological values in mitigation of climate change and protection of biodiversity of flora and fauna; re-forestry is commonly used to enhance the sequestration of atmospheric CO 2 into forest storage biomass. Therefore, seasonal and spatial dynamics of the major microbial players in nitrification, ammonia-oxidizing archaea (AOA) and bacteria (AOB), in acidic soils of young and matured revegetated forests were investigated to elucidate the changes of microbial communities during forest restoration, and compared to delineate the patterns of community shifts under the influences of environmental factors. AOA were more abundant than AOB in both young and matured revegetated forest soils in both summer and winter seasons. In summer, however, the abundance of amoA-AOA decreased remarkably (p < 0.01), ranging from 1.90 (± 0.07) × 10 8 copies per gram dry soil in matured forest to 5.04 (± 0.43) × 10 8 copies per gram dry soil in young forest, and amoA-AOB was below detection limits to obtain any meaningful values. Moreover, exchangeable Al 3+ and organic matter were found to regulate the physiologically functional nitrifiers, especially AOA abundance in acidic forest soils. AOB community in winter showed stronger correlation with the restoration status of revegetated forests and AOA community dominated by Nitrosotalea devanaterra, in contrast, was more sensitive to the seasonal and spatial variations of environmental factors. These results enrich the current knowledge of nitrification during re-forestry and provide valuable information to developmental status of revegetated forests for management through microbial analysis.

Soil Fauna Alter the Effects of Litter Composition on Nitrogen Cycling in a Mineral Soil

Science.gov (United States)

Plant chemical composition and the soil community are known to influence litter and soil organic matter decomposition. Although these two factors are likely to interact, their mechanisms and outcomes of interaction are not well understood. Studies of their interactive effects are...

Managing soil microbial communities in grain production systems through cropping practices

Science.gov (United States)

Gupta, Vadakattu

2013-04-01

Cropping practices can significantly influence the composition and activity of soil microbial communities with consequences to plant growth and production. Plant type can affect functional capacity of different groups of biota in the soil surrounding their roots, rhizosphere, influencing plant nutrition, beneficial symbioses, pests and diseases and overall plant health and crop production. The interaction between different players in the rhizosphere is due to the plethora of carbon and nutritional compounds, root-specific chemical signals and growth regulators that originate from the plant and are modulated by the physico-chemical properties of soils. A number of plant and environmental factors and management practices can influence the quantity and quality of rhizodeposition and in turn affect the composition of rhizosphere biota communities, microbe-fauna interactions and biological processes. Some of the examples of rhizosphere interactions that are currently considered important are: proliferation of plant and variety specific genera or groups of microbiota, induction of genes involved in symbiosis and virulence, promoter activity in biocontrol agents and genes correlated with root adhesion and border cell quality and quantity. The observation of variety-based differences in rhizodeposition and associated changes in rhizosphere microbial diversity and function suggests the possibility for the development of varieties with specific root-microbe interactions targeted for soil type and environment i.e. designer rhizospheres. Spatial location of microorganisms in the heterogeneous field soil matrix can have significant impacts on biological processes. Therefore, for rhizosphere research to be effective in variable seasonal climate and soil conditions, it must be evaluated in the field and within a farming systems context. With the current focus on security of food to feed the growing global populations through sustainable agricultural production systems there is a

Riqueza da fauna de formigas (Hymenoptera: Formicidae que habita as camadas superficiais do solo em Seara, Santa Catarina

Directory of Open Access Journals (Sweden)

Rogério Rosa da Silva

2004-01-01

collected 81 ant species in 36 genera. These habitats share 39 ant species. Morisita-Horn similarity index indicated lower species overlap between soil and litter samples. The similarity values between sites can be considered medium. Overall, ordination analysis (nonmetric multidimensional scaling indicated differences in community structure between ant litter and subterranean ant faunas, and showed that the spatial distribution of subterranean species is aggregated. Our results indicate that there is a strong complementarity between these two faunistics segments. We conclude that the subterranean ant fauna is an important component of ant species richness in the soil; therefore survey protocols should include soil samples for a better assessments of the ant diversity in tropical forests.

Soil fauna across Central European sandstone ravines with temperature inversion: From cool and shady to dry and hot places

Czech Academy of Sciences Publication Activity Database

Schlaghamerský, J.; Devetter, Miloslav; Háněl, Ladislav; Tajovský, Karel; Starý, Josef; Tuf, I.H.; Pižl, Václav

2014-01-01

Roč. 83, November (2014), s. 30-38 ISSN 0929-1393 Grant - others:EEA Financial Mechanism(NO) CZ0048 Institutional research plan: CEZ:AV0Z60660521 Institutional support: RVO:60077344 Keywords : soil fauna * ravines * gorges * environmental gradients * species richnes * drought Subject RIV: EH - Ecology, Behaviour Impact factor: 2.644, year: 2014

Nematode Community Composition under Various Irrigation Schemes in a Citrus Soil Ecosystem.

Science.gov (United States)

Porazinska, D L; McSorley, R; Duncan, L W; Graham, J H; Wheaton, T A; Parsons, L R

1998-06-01

Interest in the sustainability of farming practices has increased in response to environmental problems associated with conventional agricultural management often adopted for the production of herbaceous crops, ornamentals, and fruit crops. Availability of measures of the status of the soil ecosystem is of immediate importance, particularly for environmental assessment and monitoring programs. This study investigated the effects of various irrigation regimes (an example of an agricultural management practice) on the structure of the nematode fauna in a citrus orchard in the sandy ridge area of Central Florida. Ecological measures such as community structure indices, diversity indices, and maturity indices were assessed and related to irrigation intensity. Maturity index was an effective measure in distinguishing differences between irrigation regimes, whereas other indices of community structure were not. Of various nematode genera and trophic groups, only omnivores and the omnivore genera. Aporcelaimellus and Eudorylaimus responded to irrigation treatments.

Case study of microarthropod communities to assess soil quality in different managed vineyards

Science.gov (United States)

Gagnarli, E.; Goggioli, D.; Tarchi, F.; Guidi, S.; Nannelli, R.; Vignozzi, N.; Valboa, G.; Lottero, M. R.; Corino, L.; Simoni, S.

2015-07-01

Land use influences the abundance and diversity of soil arthropods. The evaluation of the impact of different management strategies on soil quality is increasingly sought, and the determination of community structures of edaphic fauna can represent an efficient tool. In the area of Langhe (Piedmont, Italy), eight vineyards characterized for physical and chemical properties (soil texture, soil pH, total organic carbon, total nitrogen, calcium carbonate) were selected. We evaluated the effect of two types of crop management, organic and integrated pest management (IPM), on abundance and biodiversity of microarthropods living at the soil surface. Soil sampling was carried out in winter 2011 and spring 2012. All specimens were counted and determined up to the order level. The biodiversity analysis was performed using ecological indexes (taxa richness, dominance, Shannon-Wiener, Buzas and Gibson's evenness, Margalef, equitability, Berger-Parker), and the biological soil quality was assessed with the BSQ-ar index. The mesofauna abundance was affected by both the type of management and sampling time. On the whole, a higher abundance was in organic vineyards (N = 1981) than in IPM ones (N = 1062). The analysis performed by ecological indexes showed quite a high level of biodiversity in this environment, particularly in May 2012. Furthermore, the BSQ-ar values registered were similar to those obtained in preserved soils.

The effect of native and introduced biofuel crops on the composition of soil biota communities

Czech Academy of Sciences Publication Activity Database

Heděnec, Petr; Novotný, D.; Usťak, S.; Cajthaml, Tomáš; Slejška, A.; Šimáčková, H.; Honzík, R.; Kovářová, M.; Frouz, Jan

2014-01-01

Roč. 60, January (2014), s. 137-146 ISSN 0961-9534 Institutional support: RVO:60077344 ; RVO:61388971 Keywords : soil fauna * energy crops * composition of soil fungi * microbial biomass * basal soil respiration Subject RIV: EH - Ecology, Behaviour Impact factor: 3.394, year: 2014

Biological functioning of PAH-polluted and thermal desorption-treated soils assessed by fauna and microbial bioindicators.

Science.gov (United States)

Cébron, Aurélie; Cortet, Jérôme; Criquet, Stéven; Biaz, Asmaa; Calvert, Virgile; Caupert, Cécile; Pernin, Céline; Leyval, Corinne

2011-11-01

A large number of soil bioindicators were used to assess biological diversity and activity in soil polluted with polycyclic aromatic hydrocarbons (PAHs) and the same soil after thermal desorption (TD) treatment. Abundance and biodiversity of bacteria, fungi, protozoa, nematodes and microarthropods, as well as functional parameters such as enzymatic activities and soil respiration, were assessed during a two year period of in situ monitoring. We investigated the influence of vegetation (spontaneous vegetation and Medicago sativa) and TD treatment on biological functioning. Multivariate analysis was performed to analyze the whole data set. A principal response curve (PRC) technique was used to evaluate the different treatments (various vegetation and contaminated vs. TD soil) contrasted with control (bare) soil over time. Our results indicated the value of using a number of complementary bioindicators, describing both diversity and functions, to assess the influence of vegetation on soil and discriminate polluted from thermal desorption (TD)-treated soil. Plants had an influence on the abundance and activity of all organisms examined in our study, favoring the whole trophic chain development. However, although TD-treated soil had a high abundance and diversity of microorganisms and fauna, enzymatic activities were weak because of the strong physical and chemical modifications of this soil. Copyright © 2011 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

The Fauna Biodiversity of Ikot Ondo Community Forest in Essien ...

African Journals Online (AJOL)

Osondu

2012-05-24

May 24, 2012 ... Abstract. Prolonged deforestation, poaching and wildlife habitat loss has been a serious threat to wildlife conservation in Nigeria, thereby endangering fauna diversity resources in the country. This study was carried out to determine the population estimate of wild fauna in the communal land of Ikot.

EFFECT OF ”KOMBA-KOMBA” PRUNING COMPOST AND PLANTING TIME OF MUNGBEAN IN INTERCROPPING WITH MAIZE ON YIELD AND SOIL FAUNA

Directory of Open Access Journals (Sweden)

Laode Sabaruddin

2014-02-01

Full Text Available Soil fauna plays an important role in decomposition and nutrient mineralization. The objective of this research was to study the effect of "komba-komba" compost and planting time of mungbean intercropped with maize on yield and soil fauna. The research was conducted in research station of Agricultural Faculty, Haluoleo University. The experiment was laid out using split plot design with two factors ("komba-komba" compost and planting time of mungbean intercropped with maize. The result indicated that the highest net assimilation rate (NAR of mungbean 5.78 g per cm2 per week was obtained in the komba-komba compost 10 ton per ha with planting time of mungbean at 14 days after planting (DAP maize whereas NAR of maize 5.50 g per cm2 per week was obtained in the planting time of mungbean at 14 DAP maize. Coleoptera and Hymenoptera (Formicidae were dominant and Shannon's diversity index ranged between 0.32 and 1.28. LER values tended to increase with the addition of "komba-komba" compost in soil and time variation of planting mungbean intercropped with maize. The relation between Shannon's diversity and LER values was variable.

Soil Characteristics Driving Arbuscular Mycorrhizal Fungal Communities in Semiarid Mediterranean Soils.

Science.gov (United States)

Alguacil, Maria Del Mar; Torres, Maria Pilar; Montesinos-Navarro, Alicia; Roldán, Antonio

2016-06-01

We investigated communities of arbuscular mycorrhizal fungi (AMF) in the roots and the rhizosphere soil of Brachypodium retusum in six different natural soils under field conditions. We explored phylogenetic patterns of AMF composition using indicator species analyses to find AMF associated with a given habitat (root versus rhizosphere) or soil type. We tested whether the AMF characteristics of different habitats or contrasting soils were more closely related than expected by chance. Then we used principal-component analysis and multivariate analysis of variance to test for the relative contribution of each factor in explaining the variation in fungal community composition. Finally, we used redundancy analysis to identify the soil properties that significantly explained the differences in AMF communities across soil types. The results pointed out a tendency of AMF communities in roots to be closely related and different from those in the rhizosphere soil. The indicator species analyses revealed AMF associated with rhizosphere soil and the root habitat. Soil type also determined the distribution of AMF communities in soils, and this effect could not be attributed to a single soil characteristic, as at least three soil properties related to microbial activity, i.e., pH and levels of two micronutrients (Mn and Zn), played significant roles in triggering AMF populations. Communities of arbuscular mycorrhizal fungi (AMF) are main components of soil biota that can determine the productivity of ecosystems. These fungal assemblages vary across host plants and ecosystems, but the main ecological processes that shape the structures of these communities are still largely unknown. A field study in six different soil types from semiarid areas revealed that AMF communities are significantly influenced by habitat (soil versus roots) and soil type. In addition, three soil properties related to microbiological activity (i.e., pH and manganese and zinc levels) were the main factors

Soil Characteristics Driving Arbuscular Mycorrhizal Fungal Communities in Semiarid Mediterranean Soils

Science.gov (United States)

Torres, Maria Pilar; Montesinos-Navarro, Alicia; Roldán, Antonio

2016-01-01

ABSTRACT We investigated communities of arbuscular mycorrhizal fungi (AMF) in the roots and the rhizosphere soil of Brachypodium retusum in six different natural soils under field conditions. We explored phylogenetic patterns of AMF composition using indicator species analyses to find AMF associated with a given habitat (root versus rhizosphere) or soil type. We tested whether the AMF characteristics of different habitats or contrasting soils were more closely related than expected by chance. Then we used principal-component analysis and multivariate analysis of variance to test for the relative contribution of each factor in explaining the variation in fungal community composition. Finally, we used redundancy analysis to identify the soil properties that significantly explained the differences in AMF communities across soil types. The results pointed out a tendency of AMF communities in roots to be closely related and different from those in the rhizosphere soil. The indicator species analyses revealed AMF associated with rhizosphere soil and the root habitat. Soil type also determined the distribution of AMF communities in soils, and this effect could not be attributed to a single soil characteristic, as at least three soil properties related to microbial activity, i.e., pH and levels of two micronutrients (Mn and Zn), played significant roles in triggering AMF populations. IMPORTANCE Communities of arbuscular mycorrhizal fungi (AMF) are main components of soil biota that can determine the productivity of ecosystems. These fungal assemblages vary across host plants and ecosystems, but the main ecological processes that shape the structures of these communities are still largely unknown. A field study in six different soil types from semiarid areas revealed that AMF communities are significantly influenced by habitat (soil versus roots) and soil type. In addition, three soil properties related to microbiological activity (i.e., pH and manganese and zinc levels

EFFECT OF DIFFERENT LEVELS AGROECOLOGICAL LOADS ON BIOCHEMICAL CHARACTERISTICS OF SOIL

OpenAIRE

A. V. Shchur; D. V. Vinogradov; V. P. Valckho

2016-01-01

Aim. To study the effect of different levels of agri-environmental loads on the enzymatic activity of the soil.Methods. Isolation of soil fauna was conducted by thermogradient. Ecological characteristics of soil biota community was determined by ecological indices. The enzymatic activity of soil under different crops and at different levels of agri-environmental loads in our experiments was determined by methods proven in the laboratory soil enzymology Institute of Experimental Botany name V....

Geographical and pedological drivers of distribution and risks to soil fauna of seven metals (Cd, Cu, Cr, Ni, Pb, V and Zn) in British soils

International Nuclear Information System (INIS)

Spurgeon, David J.; Rowland, Philip; Ainsworth, Gillian; Rothery, Peter; Long, Sara; Black, Helaina I.J.

2008-01-01

Concentrations of seven metals were measured in over 1000 samples as part of an integrated survey. Sixteen metal pairs were significantly positively correlated. Cluster analysis identified two clusters. Metals from the largest (Cr, Cu, Ni, V, Zn), but not the smallest (Cd, Pb) cluster were significantly negatively correlated with spatial location and soil pH and organic matter content. Cd and Pb were not correlated with these parameters, due possibly to the masking effect of recent extensive release. Analysis of trends with soil properties in different habitats indicated that general trends may not necessarily be applicable to all areas. A risk assessment indicated that Zn poses the most widespread direct risk to soil fauna and Cd the least. Any risks associated with high metal concentrations are, however, likely to be greatest in habitats such as arable and horticultural, improved grassland and built up areas where soil metal concentrations are more frequently elevated. - Metal distributions and risks explained by balance of sources and soil property effects on fate

Study of microarthropod communities to assess soil quality in different managed vineyards

Science.gov (United States)

Gagnarli, Elena; Vignozzi, Nadia; Valboa, Giuseppe; Bouneb, Mabrouk; Corino, Lorenzo; Goggioli, Donatella; Guidi, Silvia; Lottero, Mariarosa; Tarchi, Franca; Simoni, Sauro

2014-05-01

Land use type influences the abundance and diversity of soil arthropods. The evaluation of the effects of different crop managements on soil quality is commonly requested; it can be pursued by means of the determination of communities' structure of edaphic fauna. The development and application of biological indices may represent an efficient mean to assess soil quality. We evaluated the effect of crop managements (organic and Integrated Pest Management-IPM) in some vineyards in Piedmont (Italy) on soil biota in relation to some physical and chemical characteristics of the soil. The study was performed in eleven sites, including seven organic and four IPM managed vineyards located in the Costigliole d'Asti area. Samplings were carried out during the winter 2011 and the spring 2012. Soil samples were collected using a cylindrical soil core sampler (3cm diameter x 30cm height): each sample was a cylindrical soil core which was equally subdivided to study arthropod communities at different depth ranges. Additional samples were collected and analyzed for the following soil physical and chemical properties: texture (sedigraph method), pH (1:2.5 soil/water), total organic carbon (TOC), total nitrogen (NT) and calcium carbonate (dry combustion by CN analyzer). The extraction of microarthropods was performed using the selector Berlese-Tullgren. All specimens were counted and determined up to the order level. The influence of soil properties and of agronomic practices on the abundance of mesofauna was evaluated by multivariate analysis (MANOVA). The biological soil quality was also defined through the determination of biotic indices such as the qualitative and quantitative QBSar (Quality Biological Soil - arthropods), and biodiversity indices such as species richness and indices of Shannon-Wiener (H') and Simpson (D). Overall, more than four thousands arthropods were collected and the highest abundance was in biological management with about 2:1 ratio (biological vs

Impact of Soil Texture on Soil Ciliate Communities

Science.gov (United States)

Chau, J. F.; Brown, S.; Habtom, E.; Brinson, F.; Epps, M.; Scott, R.

2014-12-01

Soil water content and connectivity strongly influence microbial activities in soil, controlling access to nutrients and electron acceptors, and mediating interactions between microbes within and between trophic levels. These interactions occur at or below the pore scale, and are influenced by soil texture and structure, which determine the microscale architecture of soil pores. Soil protozoa are relatively understudied, especially given the strong control they exert on bacterial communities through predation. Here, ciliate communities in soils of contrasting textures were investigated. Two ciliate-specific primer sets targeting the 18S rRNA gene were used to amplify DNA extracted from eight soil samples collected from Sumter National Forest in western South Carolina. Primer sets 121F-384F-1147R (semi-nested) and 315F-959R were used to amplify soil ciliate DNA via polymerase chain reaction (PCR), and the resulting PCR products were analyzed by gel electrophoresis to obtain quantity and band size. Approximately two hundred ciliate 18S rRNA sequences were obtained were obtained from each of two contrasting soils. Sequences were aligned against the NCBI GenBank database for identification, and the taxonomic classification of best-matched sequences was determined. The ultimate goal of the work is to quantify changes in the ciliate community under short-timescale changes in hydrologic conditions for varying soil textures, elucidating dynamic responses to desiccation stress in major soil ciliate taxa.

Food Offer Inside Agroecosystem Soils as an Ecological Factor for Settling Microhabitats by Soil Saprophagous Mites

Directory of Open Access Journals (Sweden)

Jaroslav Smrž

2015-01-01

Full Text Available Mainly abiotic factors have been considered in examining soil fauna invasion or settlement. The role of soil animals communities was not considered. Our hypothesis, indeed, can be formulated: the structure and feeding habits of the soil animals community is not able to play some role in the soil rating. Localities, however, can be fragmented into microhabitats. We studied cultivated field and adjacent unploughed areas (so-called baulks, using the common Berlese–Tullgren apparatus for community structure studies followed by histological tests of food consumed by community members. We selected a group of oribatid mites, which are frequent and abundant. In the studied localities and their microhabitats, three groups of oribatid mites can be reported. First – ubiquitous species a second – migrants from the less-impacted to more-impacted microhabitats and third – specialists sensitive to severe environmental conditions in more-impacted microhabitat. They consequently live only in the less-severe, less-impacted unploughed soils and never migrate from these microhabitats. Their grazed and digested food is more diversified, and they included more feeding specialists.

Changes in the enchytraeid fauna of a moder soil beech stand after liming. Veraenderungen der Enchytraeidenfauna in einem Sauerhumus-Buchenwald nach Bestandeskalkung

Energy Technology Data Exchange (ETDEWEB)

Schoch-Boesken, J. (Duesseldorf Univ. (Germany). 2. Zoologisches Inst.); Greven, H. (Duesseldorf Univ. (Germany). 2. Zoologisches Inst.)

1989-01-01

A survey of the enchytraeid fauna before and two years after liming of a beech forest and comparison with an untreated area (Luzulo-Fagetum) reveal changes in the number of individuals/m[sup 2], number of species. Shannon-Weaver-Index and Evenness, particularly when individual soil horizons are considered. These changes obviously are related to the elevated pH of the soil after liming. pH-preferences of enchytraeids, whose dominances are strongly affected by liming, are shown. (orig.)

Faunal community consequence of interspecific bark trait dissimilarity in early-stage decomposing logs

NARCIS (Netherlands)

Zuo, Juan; Berg, Matty P.; Klein, Roy; Nusselder, Jasper; Neurink, Gert; Decker, Orsi; Hefting, Mariet M.; Sass-Klaassen, Ute; van Logtestijn, Richard S P; Goudzwaard, Leo; van Hal, Jurgen; Sterck, Frank J.; Poorter, Lourens; Cornelissen, Johannes H C

2016-01-01

Dead tree trunks have significant ecosystem functions related to biodiversity and biogeochemical cycles. When lying on the soil surface, they are colonized by an array of invertebrate fauna, but what determines their community composition is still unclear. We apply community assembly theory to

Geographical and pedological drivers of distribution and risks to soil fauna of seven metals (Cd, Cu, Cr, Ni, Pb, V and Zn) in British soils.

Science.gov (United States)

Spurgeon, David J; Rowland, Philip; Ainsworth, Gillian; Rothery, Peter; Long, Sara; Black, Helaina I J

2008-05-01

Concentrations of seven metals were measured in over 1000 samples as part of an integrated survey. Sixteen metal pairs were significantly positively correlated. Cluster analysis identified two clusters. Metals from the largest (Cr, Cu, Ni, V, Zn), but not the smallest (Cd, Pb) cluster were significantly negatively correlated with spatial location and soil pH and organic matter content. Cd and Pb were not correlated with these parameters, due possibly to the masking effect of recent extensive release. Analysis of trends with soil properties in different habitats indicated that general trends may not necessarily be applicable to all areas. A risk assessment indicated that Zn poses the most widespread direct risk to soil fauna and Cd the least. Any risks associated with high metal concentrations are, however, likely to be greatest in habitats such as arable and horticultural, improved grassland and built up areas where soil metal concentrations are more frequently elevated.

Afforestation alters community structure of soil fungi.

Science.gov (United States)

Carson, Jennifer K; Gleeson, Deirdre B; Clipson, Nicholas; Murphy, Daniel V

2010-07-01

Relatively little is known about the effect of afforestation on soil fungal communities. This study demonstrated that afforestation altered fungal community structure and that changes were correlated to pools of soil C. Pasture at three locations on the same soil type was afforested with Eucalyptus globulus or Pinus pinaster. The structure of fungal communities under the three land uses was measured after 13y using automated ribosomal intergenic spacer analysis (ARISA). Afforestation significantly altered the structure of fungal communities. The effect of location on the structure of fungal communities was limited to pasture soils; although these contained the same plant species, the relative composition of each species varied between locations. Differences in the structure of fungal communities between pasture, E. globulus and P. pinaster were significantly correlated with changes in the amount of total organic C and microbial biomass-C in soil. Afforestation of patches of agricultural land may contribute to conserving soil fungi in agricultural landscapes by supporting fungal communities with different composition to agricultural soils. Copyright © 2010 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

Data from: Faunal community consequence of interspecific bark trait dissimilarity in early-stage decomposing logs

NARCIS (Netherlands)

Zuo, Juan; Berg, M.; Klein, R.; Nusselder, J.; Neurink, G.; Decker, O.; Hefting, M.M.; Sass-Klaassen, U.G.W.; Logtestijn, van R.S.P.; Goudzwaard, L.; Hal, van Jurgen; Sterck, F.J.; Poorter, L.; Cornelissen, J.H.C.

2016-01-01

Dead tree trunks have significant ecosystem functions related to biodiversity and biogeochemical cycles. When lying on the soil surface, they are colonized by an array of invertebrate fauna, but what determines their community composition is still unclear. We apply community assembly theory to

Ecology and living conditions of groundwater fauna

Energy Technology Data Exchange (ETDEWEB)

Thulin, Barbara [Geo Innova AB (Sweden); Hahn, Hans Juergen [Arbeitsgruppe Grundwasseroekologie, Univ. of Koblenz-Landau (Germany)

2008-09-15

probable because both Harpatocoida (Parastenocaris sp.) and Nematoda have been detected in the hyporheic zone in rivers and at shores of the Baltic. In addition, groundwater fauna has been reported from other formerly glaciated areas e.g. Northern Germany, Finland, Iceland, Ireland, North America and Siberia and Alpine regions. Glaciofluvial porous aquifers, especially eskers, and karstic aquifers as well as the hyporheic zone, have proved to offer the greatest chances of successful surveys of groundwater fauna. In Sweden endemic species are not expected to be found, except in karstic aquifers in Gotland and Oeland and some parts of the Swedish Mountains. The upper layers of aquifers in crystalline bedrock have only been surveyed at very few sites. Based on community structures of groundwater fauna, reliable statements on the strength of the surface water impact and the vulnerability of the aquifer are possible. Contacts between different water bodies are displayed by groundwater fauna because groundwater fauna communities mainly reflect the intensity of surface water intrusion at a certain point when compared to hydrochemical data indicating the origin of the water. The information provided by the groundwater assemblages of an aquifer can be used for an ecologically based assessment of groundwater. Ecologically based assessment has provided initial data showing that groundwater fauna is a good marker of mixing between surface water and groundwater at certain depths. Ecologically based assessment has hitherto been used for extraction wells and quality management in drinking water abstraction (standards are still to be established). Groundwater fauna assessments have also proved to be useful in management of wetlands and regulation under nature protection law

Ecology and living conditions of groundwater fauna

International Nuclear Information System (INIS)

Thulin, Barbara; Hahn, Hans Juergen

2008-09-01

probable because both Harpatocoida (Parastenocaris sp.) and Nematoda have been detected in the hyporheic zone in rivers and at shores of the Baltic. In addition, groundwater fauna has been reported from other formerly glaciated areas e.g. Northern Germany, Finland, Iceland, Ireland, North America and Siberia and Alpine regions. Glaciofluvial porous aquifers, especially eskers, and karstic aquifers as well as the hyporheic zone, have proved to offer the greatest chances of successful surveys of groundwater fauna. In Sweden endemic species are not expected to be found, except in karstic aquifers in Gotland and Oeland and some parts of the Swedish Mountains. The upper layers of aquifers in crystalline bedrock have only been surveyed at very few sites. Based on community structures of groundwater fauna, reliable statements on the strength of the surface water impact and the vulnerability of the aquifer are possible. Contacts between different water bodies are displayed by groundwater fauna because groundwater fauna communities mainly reflect the intensity of surface water intrusion at a certain point when compared to hydrochemical data indicating the origin of the water. The information provided by the groundwater assemblages of an aquifer can be used for an ecologically based assessment of groundwater. Ecologically based assessment has provided initial data showing that groundwater fauna is a good marker of mixing between surface water and groundwater at certain depths. Ecologically based assessment has hitherto been used for extraction wells and quality management in drinking water abstraction (standards are still to be established). Groundwater fauna assessments have also proved to be useful in management of wetlands and regulation under nature protection law

Soil protist communities form a dynamic hub in the soil microbiome

NARCIS (Netherlands)

Xiong, Wu; Jousset, Alexandre; Guo, Sai; Karlsson, Ida; Zhao, Qingyun; Wu, Huasong; Kowalchuk, George A.; Shen, Qirong; Li, Rong; Geisen, Stefan

2018-01-01

Soil microbes are essential for soil fertility. However, most studies focus on bacterial and/or fungal communities, while the top-down drivers of this microbiome composition, protists, remain poorly understood. Here, we investigated how soil amendments affect protist communities and inferred

Effects of human trampling on populations of soil fauna in the McMurdo Dry Valleys, Antarctica.

Science.gov (United States)

Ayres, Edward; Nkem, Johnson N; Wall, Diana H; Adams, Byron J; Barrett, J E; Broos, Emma J; Parsons, Andrew N; Powers, Laura E; Simmons, Breana L; Virginia, Ross A

2008-12-01

Antarctic ecosystems are often considered nearly pristine because levels of anthropogenic disturbance are extremely low there. Nevertheless, over recent decades there has been a rapid increase in the number of people, researchers and tourists, visiting Antarctica. We evaluated, over 10 years, the direct impact of foot traffic on the abundance of soil animals and soil properties in Taylor Valley within the McMurdo Dry Valleys region of Antarctica. We compared soils from minimally disturbed areas with soils from nearby paths that received intermediate and high levels of human foot traffic (i.e., up to approximately 80 passes per year). The nematodes Scottnema lindsayae and Eudorylaimus sp. were the most commonly found animal species, whereas rotifers and tardigrades were found only occasionally. On the highly trampled footpaths, abundance of S. lindsayae and Eudorylaimus sp. was up to 52 and 76% lower, respectively, than in untrampled areas. Moreover, reduction in S. lindsayae abundance was more pronounced after 10 years than 2 years and in the surface soil than in the deeper soil, presumably because of the longer period of disturbance and the greater level of physical disturbance experienced by the surface soil. The ratio of living to dead Eudorylaimus sp. also declined with increased trampling intensity, which is indicative of increased mortality or reduced fecundity. At one site there was evidence that high levels of trampling reduced soil CO(2) fluxes, which is related to total biological activity in the soil. Our results show that even low levels of human traffic can significantly affect soil biota in this ecosystem and may alter ecosystem processes, such as carbon cycling. Consequently, management and conservation plans for Antarctic soils should consider the high sensitivity of soil fauna to physical disturbance as human presence in this ecosystem increases.

Effects of soil macrofauna on other soil biota and soil formation in reclaimed and unreclaimed post mining sites: Results of a field microcosm experiment

Czech Academy of Sciences Publication Activity Database

Frouz, Jan; Elhottová, Dana; Kuráž, V.; Šourková, Monika

2006-01-01

Roč. 33, č. 3, (2006), s. 308-320 ISSN 0929-1393 R&D Projects: GA ČR(CZ) GA526/01/1055; GA ČR(CZ) GA526/03/1259; GA AV ČR(CZ) 1QS600660505 Institutional research plan: CEZ:AV0Z6066911 Keywords : fauna * soil formation * microbial community Subject RIV: EH - Ecology, Behaviour Impact factor: 1.929, year: 2006

Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska.

Science.gov (United States)

Kim, Hye Min; Jung, Ji Young; Yergeau, Etienne; Hwang, Chung Yeon; Hinzman, Larry; Nam, Sungjin; Hong, Soon Gyu; Kim, Ok-Sun; Chun, Jongsik; Lee, Yoo Kyung

2014-08-01

The subarctic region is highly responsive and vulnerable to climate change. Understanding the structure of subarctic soil microbial communities is essential for predicting the response of the subarctic soil environment to climate change. To determine the composition of the bacterial community and its relationship with soil properties, we investigated the bacterial community structure and properties of surface soil from the moist acidic tussock tundra in Council, Alaska. We collected 70 soil samples with 25-m intervals between sampling points from 0-10 cm to 10-20 cm depths. The bacterial community was analyzed by pyrosequencing of 16S rRNA genes, and the following soil properties were analyzed: soil moisture content (MC), pH, total carbon (TC), total nitrogen (TN), and inorganic nitrogen (NH4+ and NO3-). The community compositions of the two different depths showed that Alphaproteobacteria decreased with soil depth. Among the soil properties measured, soil pH was the most significant factor correlating with bacterial community in both upper and lower-layer soils. Bacterial community similarity based on jackknifed unweighted unifrac distance showed greater similarity across horizontal layers than through the vertical depth. This study showed that soil depth and pH were the most important soil properties determining bacterial community structure of the subarctic tundra soil in Council, Alaska. © 2014 The Authors. FEMS Microbiology Ecology published by John Wiley & Sons Ltd on behalf of the Federation of European Microbiological Societies.

Effects of heavy metals on soil microbial community

Science.gov (United States)

Chu, Dian

2018-02-01

Soil is one of the most important environmental natural resources for human beings living, which is of great significance to the quality of ecological environment and human health. The study of the function of arable soil microbes exposed to heavy metal pollution for a long time has a very important significance for the usage of farmland soil. In this paper, the effects of heavy metals on soil microbial community were reviewed. The main contents were as follows: the effects of soil microbes on soil ecosystems; the effects of heavy metals on soil microbial activity, soil enzyme activities and the composition of soil microbial community. In addition, a brief description of main methods of heavy metal detection for soil pollution is given, and the means of researching soil microbial community composition are introduced as well. Finally, it is concluded that the study of soil microbial community can well reflect the degree of soil heavy metal pollution and the impact of heavy metal pollution on soil ecology.

Role of Earthworms in Soil Fertility Maintenance through the Production of Biogenic Structures

International Nuclear Information System (INIS)

Bhadauria, T.; Saxena, K.G.

2010-01-01

The soil biota benefits soil productivity and contributes to the sustainable function of all ecosystems. The cycling of nutrients is a critical function that is essential to life on earth. Earthworms (EWs) are a major component of soil fauna communities in most ecosystems and comprise a large proportion of macro fauna biomass. Their activity is beneficial because it can enhance soil nutrient cycling through the rapid incorporation of detritus into mineral soils. In addition to this mixing effect, mucus production associated with water excretion in earthworm guts also enhances the activity of other beneficial soil microorganisms. This is followed by the production of organic matter. So, in the short term, a more significant effect is the concentration of large quantities of nutrients (N, P, K, and Ca) that are easily assimilable by plants in fresh cast depositions. In addition, earthworms seem to accelerate the mineralization as well as the turnover of soil organic matter. Earthworms are known also to increase nitrogen mineralization, through direct and indirect effects on the microbial community. The increased transfer of organic C and N into soil aggregates indicates the potential for earthworms to facilitate soil organic matter stabilization and accumulation in agricultural systems, and that their influence depends greatly on differences in land management practices. This paper summarises information on published data on the described subjects.

Soil fungal community responses to global changes

DEFF Research Database (Denmark)

Haugwitz, Merian Skouw

Global change will affect the functioning and structure of terrestrial ecosystems and since soil fungi are key players in organic matter decomposition and nutrient turnover, shifts in fungal community composition might have a strong impact on soil functioning. The main focus of this thesis...... was therefore to investigate the impact of global environmental changes on soil fungal communities in a temperate and subartic heath ecosystem. The objective was further to determine global change effects on major functional groups of fungi and analyze the influence of fungal community changes on soil carbon...... and nutrient availability and storage. By combining molecular methods such as 454 pyrosequencing and quantitative PCR of fungal ITS amplicons with analyses of soil enzymes, nutrient pools of carbon, nitrogen and phosphorus we were able to characterize soil fungal communities as well as their impact on nutrient...

Influence of the application of pre-emergent herbicides on the soil fauna of conventional sugarcane plantations

Directory of Open Access Journals (Sweden)

Rodrigo Ferreira da Silva

2012-09-01

Full Text Available The goal of this work was to evaluate the influence of pre-emergent herbicides on the edaphic fauna community found in soils of conventional sugarcane plantations. The experimental design was in randomized blocks, in a 6x3 factorial, with six control treatments of weed plants (T1: fallow; T2: manual weeding; T3:Tebuthiuron to 1,200gia.ha-1; T4: Ametryn to 3,000gia.ha-1; T5: Tebuthiuron to 1,000gia.ha-1 + Ametryn to 1,500gia.ha-1, T6: Tebuthiuron to 1,200gia.ha-1 + Ametryn to 3,000gia.ha-1 and three evaluation times (0, 40, and 80 days after herbicide application: DAHA. The abundance, the groups of the organisms, Margalef’s richness index, Pielou´s uniformity index, Simpson’s dominance, Shannon’s diversity index, number of Collembola and above-ground dry mass were evaluated. There were no differences in the treatments for Margalef’s richness index, Pielou´s uniformity index, Simpson’s dominance and Shannon’s index. The abundance of organisms was higher at 80 DAHA in the manual weeding treatment. Tebuthiuron did not affect Collembola populations when used alone or in combination with ametryn. The treatment with the herbicide Ametryn to 3,000gia.ha-1 reduced Collembola populations in relation to the fallow treatment and manual weeding.

Phytopathology Prediction in Dry Soil Using Artificial Neural Networks Modeling

OpenAIRE

F. Allag; S. Bouharati; M. Belmahdi; R. Zegadi

2014-01-01

The rapid expansion of deserts in recent decades as a result of human actions combined with climatic changes has highlighted the necessity to understand biological processes in arid environments. Whereas physical processes and the biology of flora and fauna have been relatively well studied in marginally used arid areas, knowledge of desert soil micro-organisms remains fragmentary. The objective of this study is to conduct a diversity analysis of bacterial communities in unvegetated arid soil...

Fluoroquinolones (FQs) in the environment: A review on their abundance, sorption and toxicity in soil.

Science.gov (United States)

Riaz, Luqman; Mahmood, Tariq; Khalid, Azeem; Rashid, Audil; Ahmed Siddique, Muhammad Bashir; Kamal, Atif; Coyne, Mark S

2018-01-01

The use of fluoroquinolones (FQs) antibiotics as therapeutic agents and growth promoters is increasing worldwide; however their extensive uses are also resulting in antibiotic resistance among world communities. FQs have also become one of the major contaminants in the waste water bodies, which are not even completely removed during the treatment processes. Furthermore, their abundance in agricultural resources, such as the irrigation water, the bio-solids and the livestock manure can also affect the soil micro-environment. These antibiotics in soil tend to interact in several different ways to affect soil flora and fauna. The current review endeavors to highlight the some critical aspects of FQs prevalence in the environment. The review presents a detailed discussion on the pathways and abundance of FQs in soil. The discussion further spans the issue of sorption and FQs transformation into the soil better understand of their behavior and their toxicity to soil flora and fauna. Copyright © 2017 Elsevier Ltd. All rights reserved.

The effect of lindane on non-target fauna in a maize agro-ecosystem in Zambia

International Nuclear Information System (INIS)

Deedat, Y.D.; Chanda, S.; Chivundu, A.M.; Kalembe, G.; Mecha, C.D.

1997-01-01

The effect of lindane on non-target fauna in a maize agro-ecosystem was studied in Zambia in 1992 and 1993. While lindane was effective against the stalk borers, a target pest, it also affected other non-target fauna. Ants, spiders and springtails were significantly reduced. However the effect was only transient and lasted for approximately two months. Lindane appeared to have no real effect on aerial non-target fauna or on soil inhabiting microorganisms. (author). 8 refs, 6 tabs

Contribution to the Knowledge of the Soil-Fauna of new Guinea

NARCIS (Netherlands)

Hammen, van der L.

1983-01-01

A broad survey is given of the occurrence and distribution of microarthropods (and some other animals) in the soil of the following vegetation types in New Guinea: algal communities in the intertidal zone, beach forest, mangrove swamp forest, sago palm swamp, lowland swamp forest, forests on

Soil microbial community successional patterns during forest ecosystem restoration.

Science.gov (United States)

Banning, Natasha C; Gleeson, Deirdre B; Grigg, Andrew H; Grant, Carl D; Andersen, Gary L; Brodie, Eoin L; Murphy, D V

2011-09-01

Soil microbial community characterization is increasingly being used to determine the responses of soils to stress and disturbances and to assess ecosystem sustainability. However, there is little experimental evidence to indicate that predictable patterns in microbial community structure or composition occur during secondary succession or ecosystem restoration. This study utilized a chronosequence of developing jarrah (Eucalyptus marginata) forest ecosystems, rehabilitated after bauxite mining (up to 18 years old), to examine changes in soil bacterial and fungal community structures (by automated ribosomal intergenic spacer analysis [ARISA]) and changes in specific soil bacterial phyla by 16S rRNA gene microarray analysis. This study demonstrated that mining in these ecosystems significantly altered soil bacterial and fungal community structures. The hypothesis that the soil microbial community structures would become more similar to those of the surrounding nonmined forest with rehabilitation age was broadly supported by shifts in the bacterial but not the fungal community. Microarray analysis enabled the identification of clear successional trends in the bacterial community at the phylum level and supported the finding of an increase in similarity to nonmined forest soil with rehabilitation age. Changes in soil microbial community structure were significantly related to the size of the microbial biomass as well as numerous edaphic variables (including pH and C, N, and P nutrient concentrations). These findings suggest that soil bacterial community dynamics follow a pattern in developing ecosystems that may be predictable and can be conceptualized as providing an integrated assessment of numerous edaphic variables.

Dryland soil microbial communities display spatial biogeographic patterns associated with soil depth and soil parent material

Science.gov (United States)

Steven, Blaire; Gallegos-Graves, La Verne; Belnap, Jayne; Kuske, Cheryl R.

2013-01-01

Biological soil crusts (biocrusts) are common to drylands worldwide. We employed replicated, spatially nested sampling and 16S rRNA gene sequencing to describe the soil microbial communities in three soils derived from different parent material (sandstone, shale, and gypsum). For each soil type, two depths (biocrusts, 0–1 cm; below-crust soils, 2–5 cm) and two horizontal spatial scales (15 cm and 5 m) were sampled. In all three soils, Cyanobacteria and Proteobacteria demonstrated significantly higher relative abundance in the biocrusts, while Chloroflexi and Archaea were significantly enriched in the below-crust soils. Biomass and diversity of the communities in biocrusts or below-crust soils did not differ with soil type. However, biocrusts on gypsum soil harbored significantly larger populations of Actinobacteria and Proteobacteria and lower populations of Cyanobacteria. Numerically dominant operational taxonomic units (OTU; 97% sequence identity) in the biocrusts were conserved across the soil types, whereas two dominant OTUs in the below-crust sand and shale soils were not identified in the gypsum soil. The uniformity with which small-scale vertical community differences are maintained across larger horizontal spatial scales and soil types is a feature of dryland ecosystems that should be considered when designing management plans and determining the response of biocrusts to environmental disturbances.

Analysis of soil whole- and inner-microaggregate bacterial communities

Energy Technology Data Exchange (ETDEWEB)

Mummey, D L; Stahl, P D [University of Wyoming, Laramie, WY (United States). Dept. of Renewable Resources

2004-07-01

Although soil structure largely determines energy flows and the distribution and composition of soil microhabitats, little is known about how microbial community composition is influenced by soil structural characteristics and organic matter compartmentalization dynamics. A UV irradiation-based procedure was developed to specifically isolate inner-microaggregate microbial communities, thus providing the means to analyze these communities in relation to their environment. Whole- and inner-microaggregate fractions of undisturbed soil and soils reclaimed after disturbance by surface coal mining were analyzed using 16S rDNA terminal restriction fragment polymorphism (T-RFLP) and sequence analyses to determine salient bacterial community structural characteristics. We hypothesized that inner-microaggregate environments select for definable microbial communities and that, due to their sequestered environment, inner-microaggregate communities would not be significantly impacted by disturbance. However, T-RFLP analysis indicated distinct differences between bacterial populations of inner-microaggregates of undisturbed and reclaimed soils. While both undisturbed and reclaimed inner-microaggregate bacterial communities were dominated by Actinobacteria, undisturbed soils contained only Actinobacteridae, while in inner-microaggregates of reclaimed soils Rubrobacteridae predominate. Spatial stratification of division-level lineages within microaggregates was also seen. The fractionation methods employed in this study therefore represent a valuable tool for defining relationships between biodiversity and soil structure.

Microbial community composition affects soil fungistasis.

Science.gov (United States)

de Boer, Wietse; Verheggen, Patrick; Klein Gunnewiek, Paulien J A; Kowalchuk, George A; van Veen, Johannes A

2003-02-01

Most soils inhibit fungal germination and growth to a certain extent, a phenomenon known as soil fungistasis. Previous observations have implicated microorganisms as the causal agents of fungistasis, with their action mediated either by available carbon limitation (nutrient deprivation hypothesis) or production of antifungal compounds (antibiosis hypothesis). To obtain evidence for either of these hypotheses, we measured soil respiration and microbial numbers (as indicators of nutrient stress) and bacterial community composition (as an indicator of potential differences in the composition of antifungal components) during the development of fungistasis. This was done for two fungistatic dune soils in which fungistasis was initially fully or partly relieved by partial sterilization treatment or nutrient addition. Fungistasis development was measured as restriction of the ability of the fungi Chaetomium globosum, Fusarium culmorum, Fusarium oxysporum, and Trichoderma harzianum to colonize soils. Fungistasis did not always reappear after soil treatments despite intense competition for carbon, suggesting that microbial community composition is important in the development of fungistasis. Both microbial community analysis and in vitro antagonism tests indicated that the presence of pseudomonads might be essential for the development of fungistasis. Overall, the results lend support to the antibiosis hypothesis.

Loss of soil (macro)fauna due to the expansion of Brazilian sugarcane acreage.

Science.gov (United States)

Franco, André L C; Bartz, Marie L C; Cherubin, Maurício R; Baretta, Dilmar; Cerri, Carlos E P; Feigl, Brigitte J; Wall, Diana H; Davies, Christian A; Cerri, Carlos C

2016-09-01

Land use changes (LUC) from pasture to sugarcane (Saccharum spp.) crop are expected to add 6.4Mha of new sugarcane land by 2021 in the Brazilian Cerrado and Atlantic Forest biomes. We assessed the effects of these LUC on the abundance and community structure of animals that inhabit soils belowground through a field survey using chronosequences of land uses comprising native vegetation, pasture, and sugarcane along a 1000-km-long transect across these two major tropical biomes in Brazil. Macrofauna community composition differed among land uses. While most groups were associated with samples taken in native vegetation, high abundance of termites and earthworms appeared associated with pasture soils. Linear mixed effects analysis showed that LUC affected total abundance (X(2)(1)=6.79, p=0.03) and taxa richness (X(2)(1)=6.08, p=0.04) of soil macrofauna. Abundance increased from 411±70individualsm(-2) in native vegetation to 1111±202individualsm(-2) in pasture, but decreased sharply to 106±24individualsm(-2) in sugarcane soils. Diversity decreased 24% from native vegetation to pasture, and 39% from pasture to sugarcane. Thus, a reduction of ~90% in soil macrofauna abundance, besides a loss of ~40% in the diversity of macrofauna groups, can be expected when sugarcane crops replace pasture in Brazilian tropical soils. In general, higher abundances of major macrofauna groups (ants, coleopterans, earthworms, and termites) were associated with higher acidity and low contents of macronutrients and organic matter in soil. This study draws attention for a significant biodiversity loss belowground due to tropical LUC in sugarcane expansion areas. Given that many groups of soil macrofauna are recognized as key mediators of ecosystem processes such as soil aggregation, nutrients cycling and soil carbon storage, our results warrant further efforts to understand the impacts of altering belowground biodiversity and composition on soil functioning and agriculture performance

Soil microbial community response to land use and various soil ...

African Journals Online (AJOL)

Soil microbial community response to land use and various soil elements in a city landscape of north China. ... African Journal of Biotechnology ... Legumes played an important role in stimulating the growth and reproduction of various soil microbial populations, accordingly promoting the microbial catabolic activity.

Effects of imidacloprid on soil microbial communities in different saline soils.

Science.gov (United States)

Zhang, Qingming; Xue, Changhui; Wang, Caixia

2015-12-01

The effects of imidacloprid in the soil environment are a worldwide concern. However, the impact of imidacloprid on soil microorganisms under salt stress is almost unknown. Therefore, an indoor incubation test was performed, and the denaturing gradient gel electrophoresis (DGGE) approach was used to determine the response of different saline soil bacterial and fungal community structures to the presence of imidacloprid (0.4, 2, 10 mg kg(-1)). The results showed that the soil bacterial diversity slightly declined with increasing imidacloprid concentration in soils with low salinity. In moderately saline soils, a new band in the DGGE profile suggested that imidacloprid could improve the soil bacterial diversity to some degree. An analysis of variance indicated that the measured soil bacterial diversity parameters were significantly affected by dose and incubation time. Compared with the control, the soil fungal community structure showed no obvious changes in low and moderately saline soils treated with imidacloprid. The results of these observations provide a basic understanding of the potential ecological effects of imidacloprid on different microorganisms in saline soils.

Outdoor Terrestrial Model Ecosystems are suitable to detect pesticide effects on soil fauna: design and method development.

Science.gov (United States)

Scholz-Starke, B; Nikolakis, A; Leicher, T; Lechelt-Kunze, C; Heimbach, F; Theissen, B; Toschki, A; Ratte, H T; Schäffer, A; Ross-Nickoll, M

2011-11-01

Terrestrial Model Ecosystems (TME) were developed as one higher-tier option to detect and assess effects of pesticides on soil communities in a 1 year study using lindane (gamma-HCH) as a persistent and toxic reference pesticide. TME contained intact soil cores (diameter 300 mm, height 400 mm) including indigenous soil communities of undisturbed grassland. Forty units were placed outdoors between spring 2005 and 2006. The TME experiment was designed to provide data that fulfill the requirements of the revised European regulation on plant protection products (regulation 1107/2009/EEC replacing guideline 91/414/EC) with a focus on structural endpoints such as soil organisms and their community structure in case higher-tier evaluation is triggered. The key objective was to evaluate the dynamics and stability of species-diverse microarthropod communities of undisturbed grassland over at least 1 year after application. In grassland soils, less selection pressure towards insensitive species compared to arable land was presumed. Sufficient numbers of organisms and numerous TME replicates ensured that a statistical evaluation could be performed to estimate the sensitivity of the organisms upon application of lindane applied at high rates of 7.5 and 75 kg ai/ha. The application rates resulted in nominal concentrations of 10 and 100 mg ai/kg dry soil referred to the top 5 cm soil layer of 10 TME each; 20 untreated TME served as controls and were used to study the natural dynamics and the variability of populations under field conditions. Results showed that the grassland from which the soil cores were sampled contained communities of soil organisms marked by typical diversity of improved grassland. Lindane applied at excessive rates caused clear dose-related and long-lasting effects on the communities of microarthropods. On the contrary, lumbricids, the total feeding activity (bait lamina) and the growth of plant biomass were not affected up to 1 year after application

Soil ecosystem functioning under climate change: plant species and community effects

Energy Technology Data Exchange (ETDEWEB)

Kardol, Paul [ORNL; Cregger, Melissa [ORNL; Campany, Courtney E [ORNL; Classen, Aimee T [ORNL

2010-01-01

Feedbacks of terrestrial ecosystems to climate change depend on soil ecosystem dynamics. Soil ecosystems can directly and indirectly respond to climate change. For example, warming directly alters microbial communities by increasing their activity. Climate change may also alter plant community composition, thus indirectly altering the microbial communities that feed on their inputs. To better understand how climate change may directly and indirectly alter soil ecosystem functioning, we investigated old-field plant community and soil ecosystem responses to single and combined effects of elevated [CO2], warming, and water availability. Specifically, we collected soils at the plot level (plant community soils), and beneath dominant plant species (plant-specific soils). We used microbial enzyme activities and soil nematodes as indicators for soil ecosystem functioning. Our study resulted in two main findings: 1) Overall, while there were some interactions, water, relative to increases in [CO2] and warming, had the largest impact on plant community composition, soil enzyme activities, and soil nematodes. Multiple climate change factors can interact to shape ecosystems, but in this case, those interactions were largely driven by changes in water availability. 2) Indirect effects of climate change, via changes in plant communities, had a significant impact on soil ecosystem functioning and this impact was not obvious when looking at plant community soils. Climate change effects on enzyme activities and soil nematode abundance and community structure strongly differed between plant community soils and plant-specific soils, but also within plant-specific soils. In sum, these results indicate that accurate assessments of climate change impacts on soil ecosystem functioning require incorporating the concurrent changes in plant function and plant community composition. Climate change-induced shifts in plant community composition will likely modify or counteract the direct

Soil microbial community responses to antibiotic-contaminated manure under different soil moisture regimes.

Science.gov (United States)

Reichel, Rüdiger; Radl, Viviane; Rosendahl, Ingrid; Albert, Andreas; Amelung, Wulf; Schloter, Michael; Thiele-Bruhn, Sören

2014-01-01

Sulfadiazine (SDZ) is an antibiotic frequently administered to livestock, and it alters microbial communities when entering soils with animal manure, but understanding the interactions of these effects to the prevailing climatic regime has eluded researchers. A climatic factor that strongly controls microbial activity is soil moisture. Here, we hypothesized that the effects of SDZ on soil microbial communities will be modulated depending on the soil moisture conditions. To test this hypothesis, we performed a 49-day fully controlled climate chamber pot experiments with soil grown with Dactylis glomerata (L.). Manure-amended pots without or with SDZ contamination were incubated under a dynamic moisture regime (DMR) with repeated drying and rewetting changes of >20 % maximum water holding capacity (WHCmax) in comparison to a control moisture regime (CMR) at an average soil moisture of 38 % WHCmax. We then monitored changes in SDZ concentration as well as in the phenotypic phospholipid fatty acid and genotypic 16S rRNA gene fragment patterns of the microbial community after 7, 20, 27, 34, and 49 days of incubation. The results showed that strongly changing water supply made SDZ accessible to mild extraction in the short term. As a result, and despite rather small SDZ effects on community structures, the PLFA-derived microbial biomass was suppressed in the SDZ-contaminated DMR soils relative to the CMR ones, indicating that dynamic moisture changes accelerate the susceptibility of the soil microbial community to antibiotics.

Archaeal Communities in a Heterogeneous Hypersaline-Alkaline Soil

Directory of Open Access Journals (Sweden)

Yendi E. Navarro-Noya

2015-01-01

Full Text Available In this study the archaeal communities in extreme saline-alkaline soils of the former lake Texcoco, Mexico, with electrolytic conductivities (EC ranging from 0.7 to 157.2 dS/m and pH from 8.5 to 10.5 were explored. Archaeal communities in the 0.7 dS/m pH 8.5 soil had the lowest alpha diversity values and were dominated by a limited number of phylotypes belonging to the mesophilic Candidatus Nitrososphaera. Diversity and species richness were higher in the soils with EC between 9.0 and 157.2 dS/m. The majority of OTUs detected in the hypersaline soil were members of the Halobacteriaceae family. Novel phylogenetic branches in the Halobacteriales class were detected in the soil, and more abundantly in soil with the higher pH (10.5, indicating that unknown and uncharacterized Archaea can be found in this soil. Thirteen different genera of the Halobacteriaceae family were identified and were distributed differently between the soils. Halobiforma, Halostagnicola, Haloterrigena, and Natronomonas were found in all soil samples. Methanogenic archaea were found only in soil with pH between 10.0 and 10.3. Retrieved methanogenic archaea belonged to the Methanosarcinales and Methanomicrobiales orders. The comparison of the archaeal community structures considering phylogenetic information (UniFrac distances clearly clustered the communities by pH.

Prokaryotic communities differ along a geothermal soil photic gradient.

Science.gov (United States)

Meadow, James F; Zabinski, Catherine A

2013-01-01

Geothermal influenced soils exert unique physical and chemical limitations on resident microbial communities but have received little attention in microbial ecology research. These environments offer a model system in which to investigate microbial community heterogeneity and a range of soil ecological concepts. We conducted a 16S bar-coded pyrosequencing survey of the prokaryotic communities in a diatomaceous geothermal soil system and compared communities across soil types and along a conspicuous photic depth gradient. We found significant differences between the communities of the two different soils and also predictable differences between samples taken at different depths. Additionally, we targeted three ecologically relevant bacterial phyla, Cyanobacteria, Planctomycetes, and Verrucomicrobia, for clade-wise comparisons with these variables and found strong differences in their abundances, consistent with the autecology of these groups.

Plant diversity and plant identity influence Fusarium communities in soil.

Science.gov (United States)

LeBlanc, Nicholas; Kinkel, Linda; Kistler, H Corby

2017-01-01

Fusarium communities play important functional roles in soil and in plants as pathogens, endophytes, and saprotrophs. This study tests how rhizosphere Fusarium communities may vary with plant species, changes in the diversity of the surrounding plant community, and soil physiochemical characteristics. Fusarium communities in soil associated with the roots of two perennial prairie plant species maintained as monocultures or growing within polyculture plant communities were characterized using targeted metagenomics. Amplicon libraries targeting the RPB2 locus were generated from rhizosphere soil DNAs and sequenced using pyrosequencing. Sequences were clustered into operational taxonomic units (OTUs) and assigned a taxonomy using the Evolutionary Placement Algorithm. Fusarium community composition was differentiated between monoculture and polyculture plant communities, and by plant species in monoculture, but not in polyculture. Taxonomic classification of the Fusarium OTUs showed a predominance of F. tricinctum and F. oxysporum as well of the presence of a clade previously only found in the Southern Hemisphere. Total Fusarium richness was not affected by changes in plant community richness or correlated with soil physiochemical characteristics. However, OTU richness within two predominant phylogenetic lineages within the genus was positively or negatively correlated with soil physiochemical characteristics among samples within each lineage. This work shows that plant species, plant community richness, and soil physiochemical characteristics may all influence the composition and richness of Fusarium communities in soil.

Regional factors rather than forest type drive the community structure of soil living oribatid mites (Acari, Oribatida).

Science.gov (United States)

Erdmann, Georgia; Scheu, Stefan; Maraun, Mark

2012-06-01

Most European forests are managed by humans. However, the manner and intensity of management vary. While the effect of forest management on above-ground communities has been investigated in detail, effects on the below-ground fauna remain poorly understood. Oribatid mites are abundant microarthropods in forest soil and important decomposers in terrestrial ecosystems. Here, we investigated the effect of four forest types (i.e., managed coniferous forests; 30 and 70 years old managed beech forests; natural beech forests) on the density, diversity and community structure of oribatid mites (Acari). The study was replicated at three regions in Germany: the Swabian Alb, the Hainich and the Schorfheide. To relate changes in oribatid mite community structure to environmental factors, litter mass, pH, C and N content of litter, fine roots and C content of soil were measured. Density of oribatid mites was highest in the coniferous forests and decreased in the order 30 years old, 70 years old, and natural beech forests. Mass of the litter layer and density of oribatid mites were strongly correlated indicating that the litter layer is an important factor regulating oribatid mite densities. Diversity of oribatid mites was little affected by forest type indicating that they harbor similar numbers of niches. Species composition differed between the forest types, suggesting different types of niches. The community structure of oribatid mites differed more strongly between the three regions than between the forest types indicating that regional factors are more important than effects associated with forest type.

Melaleuca alternifolia Essential Oil against the Lesser Mealworm (Alphitobius diaperinus and Its Possible Effect on the Soil Fauna

Directory of Open Access Journals (Sweden)

A Volpato

2016-03-01

Full Text Available ABSTRACT The aim of this study was to evaluate the in vitro bioactivity of tea tree (Melaleuca alternifolia essential oil against larvae and adult forms of lesser mealworms (Alphitobius diaperinus and its influence on the soil fauna. Tests were performed in triplicate using pure tea tree oil (TTO; 1, 5, 10, 25, 50, and 100%, TTO nanoparticles (1, 3, and 7.5%, or terpinen-4-ol, the main compound of the tea tree oil, at the same concentrations of TTO. Larvae and adult mortality occurred at concentrations up to 10 and 50% of TTO, respectively. No larvicidal or insecticidal effect of TTO nanoparticles was observed. Terpinen-4-ol showed insecticidal and larvicidal effect at concentrations higher than 25%. The evaluation of TTO effect on soil organisms was performed by standard ecotoxicological tests (ISO with the springtail species Folsomia candida. Only TTO was used for ecotoxicological tests in doses of 1, 5, 10, 25, 50, and 100 mg kg-1 of soil. TTO had no negative effects on F. candida survival or reproduction. Therefore, it was concluded that M. alternifolia oil may be a new alternative for control of the lesser mealworm.

Diversity of the Arthropod edaphic fauna in preserved and managed with pasture areas in Teresina-Piauí-Brazil

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RA. Luz

Full Text Available The soil fauna plays an important function over the processes of organic matter decomposition, nutrient cycling, ground aeration and fertility. Thus, studies on the composition and structure of such communities are important, considering moreover the lack of information in different regions of Brazil and mainly related to the state of Piauí. This study aimed to evaluate the density and diversity of the soil arthropod fauna in a Cerrado area in preservation conditions and in a pasture area. Both are situated in the city of Teresina, capital of the state of Piauí. Pitfall traps were used for sampling. Five stations with four traps were placed in each area. The traps were constituted by a 500 mL plastic cup containing a preserving solution made with 70% alcohol and 40% formalin. The traps were weekly changed by occasion of the collections. Eight samples were performed in the period between March and April 2007. The results were evaluated using the following variables: number of orders, number of families, total of species and total number of individuals. Evaluation of the Diversity Index and Similarity Coefficient were also performed. As result, the variables and diversity indices were slightly higher in the preserved area. However, the similarity coefficient showed only 10% similarity between both areas.

Light structures phototroph, bacterial and fungal communities at the soil surface.

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Lawrence O Davies

Full Text Available The upper few millimeters of soil harbour photosynthetic microbial communities that are structurally distinct from those of underlying bulk soil due to the presence of light. Previous studies in arid zones have demonstrated functional importance of these communities in reducing soil erosion, and enhancing carbon and nitrogen fixation. Despite being widely distributed, comparative understanding of the biodiversity of the soil surface and underlying soil is lacking, particularly in temperate zones. We investigated the establishment of soil surface communities on pasture soil in microcosms exposed to light or dark conditions, focusing on changes in phototroph, bacterial and fungal communities at the soil surface (0-3 mm and bulk soil (3-12 mm using ribosomal marker gene analyses. Microbial community structure changed with time and structurally similar phototrophic communities were found at the soil surface and in bulk soil in the light exposed microcosms suggesting that light can influence phototroph community structure even in the underlying bulk soil. 454 pyrosequencing showed a significant selection for diazotrophic cyanobacteria such as Nostoc punctiforme and Anabaena spp., in addition to the green alga Scenedesmus obliquus. The soil surface also harboured distinct heterotrophic bacterial and fungal communities in the presence of light, in particular, the selection for the phylum Firmicutes. However, these light driven changes in bacterial community structure did not extend to the underlying soil suggesting a discrete zone of influence, analogous to the rhizosphere.

Fungal communities in soils along a vegetative ecotone.

Science.gov (United States)

Karst, Justine; Piculell, Bridget; Brigham, Christy; Booth, Michael; Hoeksema, Jason D

2013-01-01

We investigated the community composition and diversity of soil fungi along a sharp vegetative ecotone between coastal sage scrub (CSS) and nonnative annual grassland habitat at two sites in coastal California. USA- We pooled soil samples across 29 m transects on either side of the ecotone at each of the two sites, and. using clone libraries of fungal ribosomal DNA, we identified 280 operational taxonomic units (OTUs) from a total 40 g soil. We combined information from partial LSU and ITS sequences and found that the majority of OTUs belonged to the phylum Ascomycota, followed by Basidiomycota. Within the Ascomycota. a quarter of OTUs were Sordariomycetes. 17% were Leotiomycet.es, 16% were Dothideomycetes and the remaining OTUs were distributed among the classes Eurotiomycetes, Pezizomycetes, Lecanoromycetes, Orbiliomycetes and Arthoniomycetes. Within the Basidiomycota. all OTUs but one belonged to the subphylum Agaricomycotina. We also sampled plant communities at the same sites to offer a point of comparison for patterns in richness of fungal communities. Fungal communities had higher alpha and beta diversity than plant communities; fungal communities were approximately 20 times as rich as plant communities and the majority of OTUs were found in single soil samples. Soils harbored a unique mycoflora that did not reveal vegetative boundaries or site differences. High alpha and beta diversity and possible sampling artifacts necessitate extensive sampling to reveal differentiation in these fungal communities.

EFFECT OF DIFFERENT LEVELS AGROECOLOGICAL LOADS ON BIOCHEMICAL CHARACTERISTICS OF SOIL

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A. V. Shchur

2016-01-01

Full Text Available Aim. To study the effect of different levels of agri-environmental loads on the enzymatic activity of the soil.Methods. Isolation of soil fauna was conducted by thermogradient. Ecological characteristics of soil biota community was determined by ecological indices. The enzymatic activity of soil under different crops and at different levels of agri-environmental loads in our experiments was determined by methods proven in the laboratory soil enzymology Institute of Experimental Botany name V.F. Kuprevich and Belorussian Research Institute for Soil Science and Agricultural Chemistry.Results. Community soil biota is polydominant character, as evidenced by the values of environmental indices. It does not set a significant impact on the community agrotechnological loads of soil micro and mesofauna. Absolute figures soil phosphatase activity averaged over all embodiments without recourse formation were higher by 63% compared with plowing. Invertase and catalase activity was much higher in stubble on all variants of the experiment and selection of terms. The content of peroxidase lower under pure steam. The laws have taken place in respect of peroxidase activity, marked for polifenoloksidase activity.Main conclusion. There was no major change in the ecological characteristics of soil biota. In the enzymatic activity of soil influenced by sampling time, fertilizer system, soil tillage methods and cultivated crops.

Plant species richness sustains higher trophic levels of soil nematode communities after consecutive environmental perturbations.

Science.gov (United States)

Cesarz, Simone; Ciobanu, Marcel; Wright, Alexandra J; Ebeling, Anne; Vogel, Anja; Weisser, Wolfgang W; Eisenhauer, Nico

2017-07-01

The magnitude and frequency of extreme weather events are predicted to increase in the future due to ongoing climate change. In particular, floods and droughts resulting from climate change are thought to alter the ecosystem functions and stability. However, knowledge of the effects of these weather events on soil fauna is scarce, although they are key towards functioning of terrestrial ecosystems. Plant species richness has been shown to affect the stability of ecosystem functions and food webs. Here, we used the occurrence of a natural flood in a biodiversity grassland experiment that was followed by a simulated summer drought experiment, to investigate the interactive effects of plant species richness, a natural flood, and a subsequent summer drought on nematode communities. Three and five months after the natural flooding, effects of flooding severity were still detectable in the belowground system. We found that flooding severity decreased soil nematode food-web structure (loss of K-strategists) and the abundance of plant feeding nematodes. However, high plant species richness maintained higher diversity and abundance of higher trophic levels compared to monocultures throughout the flood. The subsequent summer drought seemed to be of lower importance but reversed negative flooding effects in some cases. This probably occurred because the studied grassland system is well adapted to drought, or because drought conditions alleviated the negative impact of long-term soil waterlogging. Using soil nematodes as indicator taxa, this study suggests that high plant species richness can maintain soil food web complexity after consecutive environmental perturbations.

Biology of main soil formers in the area of radioactive contamination

International Nuclear Information System (INIS)

Maksimova, S.L.

2007-01-01

Based on the results of our study, we have a conclusion - the decomposer community exposed to irradiation for a long time reacts clearly by a noticeable suppression. Our results also demonstrated that there was a strong relation between decomposition rates and numbers of decomposer fauna present in soil layers. Taking into account the important role of decomposer invertebrates in the development and maintenance of soil structure, and in the incorporation and breakdown of organic residues in the soil, we made conclusion that the reduction of density and biodiversity of decomposer organisms in the contaminated zone produced long term effects on the soil health. (authors)

Parental material and cultivation determine soil bacterial community structure and fertility.

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Sun, Li; Gao, Jusheng; Huang, Ting; Kendall, Joshua R A; Shen, Qirong; Zhang, Ruifu

2015-01-01

Microbes are the key components of the soil environment, playing important roles during soil development. Soil parent material provides the foundation elements that comprise the basic nutritional environment for the development of microbial community. After 30 years artificial maturation of cultivation, the soil developments of three different parental materials were evaluated and bacterial community compositions were investigated using the high-throughput sequencing approach. Thirty years of cultivation increased the soil fertility and soil microbial biomass, richness and diversity, greatly changed the soil bacterial communities, the proportion of phylum Actinobacteria decreased significantly, while the relative abundances of the phyla Acidobacteria, Chloroflexi, Gemmatimonadetes, Armatimonadetes and Nitrospira were significantly increased. Soil bacterial communities of parental materials were separated with the cultivated ones, and comparisons of different soil types, granite soil and quaternary red clay soil were similar and different with purple sandy shale soil in both parental materials and cultivated treatments. Bacterial community variations in the three soil types were affected by different factors, and their alteration patterns in the soil development also varied with soil type. Soil properties (except total potassium) had a significant effect on the soil bacterial communities in all three soil types and a close relationship with abundant bacterial phyla. The amounts of nitrogen-fixing bacteria as well as the abundances of the nifH gene in all cultivated soils were higher than those in the parental materials; Burkholderia and Rhizobacte were enriched significantly with long-term cultivation. The results suggested that crop system would not deplete the nutrients of soil parental materials in early stage of soil maturation, instead it increased soil fertility and changed bacterial community, specially enriched the nitrogen-fixing bacteria to accumulate

Minerals in soil select distinct bacterial communities in their microhabitats.

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Carson, Jennifer K; Campbell, Louise; Rooney, Deirdre; Clipson, Nicholas; Gleeson, Deirdre B

2009-03-01

We tested the hypothesis that different minerals in soil select distinct bacterial communities in their microhabitats. Mica (M), basalt (B) and rock phosphate (RP) were incubated separately in soil planted with Trifolium subterraneum, Lolium rigidum or left unplanted. After 70 days, the mineral and soil fractions were separated by sieving. Automated ribosomal intergenic spacer analysis was used to determine whether the bacterial community structure was affected by the mineral, fraction and plant treatments. Principal coordinate plots showed clustering of bacterial communities from different fraction and mineral treatments, but not from different plant treatments. Permutational multivariate anova (permanova) showed that the microhabitats of M, B and RP selected bacterial communities different from each other in unplanted and L. rigidum, and in T. subterraneum, bacterial communities from M and B differed (Ppermanova also showed that each mineral fraction selected bacterial communities different from the surrounding soil fraction (P<0.05). This study shows that the structure of bacterial communities in soil is influenced by the mineral substrates in their microhabitat and that minerals in soil play a greater role in bacterial ecology than simply providing an inert matrix for bacterial growth. This study suggests that mineral heterogeneity in soil contributes to the spatial variation in bacterial communities.

Soil invertebrate communities in stressed European ecosystems

Energy Technology Data Exchange (ETDEWEB)

Butovsky, R.O. [All-Russian Research Institute for Nature Protection, Sadki-Znamenskoje (Russian Federation)

2003-07-01

Intensive landuse in Europe results in continual physical and chemical changes to land and soil. Soil invertebrates can be used for development of single- and multi-species test-systems for soil quality assessment under anthropogenous stress. The research was performed in 18 terrestrial ecosystems stressed by common anthropogenous impacts: recreation pressure, motorway or industrial pollution in Central Russia, Belgium and the Netherlands in 1983-2001. All three types of human stresses (recreation, motorway and industrial) induced similar changes of macroartropod and microarthropod communities. In stressed macroarthropod communities the decrease of abundance of non-specialized predators, chewing phytophagans, saprophagans and increase of abundance of rhyzophagans, sucking phytophagans and specialized predators was observed. All types of stresses increased or stabilized species diversity in macro- (in carabid beetles communities mainly increase of Harpalus and Amara species number, in weevils - Sitona species number etc.) and microarthropod (e.g. Mesostigmata mites species) communities. In stressed ecosystems sucking phytophagans have selective advantage as compared to chewing phytophagans, endoparasitoids as compared to ectoparasitoids, specialized predators as compared to non-specialized predators etc., meaning that the feeding strategy play an important regulatory role in the community. Saprophagans and phytophagans, consuming chemicals, e.g. heavy metals in large quantities, are in general highly sensitive groups. The most sensitive groups belonged to first and second order consumers. In putative trophic chains in roadside ecosystems, non-specialized zoophagans (predators) contained less copper and zinc, than specialized zoophagans and parasitoids. When compared to the peculiarities of distribution of pesticides (e.g. DDT) and radionuclides (Sr90 and Cs137) it happens that in terrestrial ecosystems heavy metals were primarily accumulated (1) in soil

Microbial community composition of transiently wetted Antarctic Dry Valley soils.

Science.gov (United States)

Niederberger, Thomas D; Sohm, Jill A; Gunderson, Troy E; Parker, Alexander E; Tirindelli, Joëlle; Capone, Douglas G; Carpenter, Edward J; Cary, Stephen C

2015-01-01

During the summer months, wet (hyporheic) soils associated with ephemeral streams and lake edges in the Antarctic Dry Valleys (DVs) become hotspots of biological activity and are hypothesized to be an important source of carbon and nitrogen for arid DV soils. Recent research in the DV has focused on the geochemistry and microbial ecology of lakes and arid soils, with substantially less information being available on hyporheic soils. Here, we determined the unique properties of hyporheic microbial communities, resolved their relationship to environmental parameters and compared them to archetypal arid DV soils. Generally, pH increased and chlorophyll a concentrations decreased along transects from wet to arid soils (9.0 to ~7.0 for pH and ~0.8 to ~5 μg/cm(3) for chlorophyll a, respectively). Soil water content decreased to below ~3% in the arid soils. Community fingerprinting-based principle component analyses revealed that bacterial communities formed distinct clusters specific to arid and wet soils; however, eukaryotic communities that clustered together did not have similar soil moisture content nor did they group together based on sampling location. Collectively, rRNA pyrosequencing indicated a considerably higher abundance of Cyanobacteria in wet soils and a higher abundance of Acidobacterial, Actinobacterial, Deinococcus/Thermus, Bacteroidetes, Firmicutes, Gemmatimonadetes, Nitrospira, and Planctomycetes in arid soils. The two most significant differences at the genus level were Gillisia signatures present in arid soils and chloroplast signatures related to Streptophyta that were common in wet soils. Fungal dominance was observed in arid soils and Viridiplantae were more common in wet soils. This research represents an in-depth characterization of microbial communities inhabiting wet DV soils. Results indicate that the repeated wetting of hyporheic zones has a profound impact on the bacterial and eukaryotic communities inhabiting in these areas.

Soil shapes community structure through fire.

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Ojeda, Fernando; Pausas, Juli G; Verdú, Miguel

2010-07-01

Recurrent wildfires constitute a major selecting force in shaping the structure of plant communities. At the regional scale, fire favours phenotypic and phylogenetic clustering in Mediterranean woody plant communities. Nevertheless, the incidence of fire within a fire-prone region may present strong variations at the local, landscape scale. This study tests the prediction that woody communities on acid, nutrient-poor soils should exhibit more pronounced phenotypic and phylogenetic clustering patterns than woody communities on fertile soils, as a consequence of their higher flammability and, hence, presumably higher propensity to recurrent fire. Results confirm the predictions and show that habitat filtering driven by fire may be detected even in local communities from an already fire-filtered regional flora. They also provide a new perspective from which to consider a preponderant role of fire as a key evolutionary force in acid, infertile Mediterranean heathlands.

Detection of irradiation induced changes on the activity and diversity of soil organisms: the effect of soil type

International Nuclear Information System (INIS)

Parekh, N.R.; Beresford, N.A.; Black, H.I.J.; Potter, E.D.; Poskitt, J.M.; Dodd, B.A.

2004-01-01

Whilst non-radiological environmental impact assessments consider impacts on ecosystem function by assessing soil health the techniques of doing so have rarely been applied to radiological studies. Our aim in the study described was to measure the effects of irradiation treatments on soil communities from three different soils. Undisturbed soil cores from two temperate woodland sites (deciduous and coniferous) and a grassland site were irradiated to give a range of cumulative doses from 0 160 Gy. All cores were incubated at 15 deg C and three cores from each treatment sampled after <1, 3 and 8 days post irradiation. Soil samples were analysed for the presence and abundance of fauna, fungi and heterotrophic bacteria. The activity and functional diversity of soil microbial communities was also assessed in terms of their potential to utilise a range of carbon sources. There was a small impact on Oribatid mites at the highest dose but no significant effect on other soil faunal groups. Although significant changes in the numbers of cultivable fungi or fast growing heterotrophic bacteria were not observed at any of the treatment doses, the numbers of cultivable Pseudomonas spp. declined in all three soil types after irradiation at 80 and 160 Gy. This decline was greatest in the coniferous forest soil. Microbial communities from this soil also showed a dramatic decrease in metabolic activity and in the number of substrates utilised after irradiation at 160 Gy as compared with control non-irradiated samples. Our results show that the affects of gamma irradiation on soil microorganisms are more pronounced in the two organic forest soils as compared to the mineral grassland soil. These differences can be related to two factors; variations in the physico-chemical shielding properties of the soils and differences in the indigenous communities in terms of radioresistant species. (author)

Impact of Grassland Reseeding, Herbicide spraying and Ploughing on Diversity and Abundance of Soil Arthropods.

OpenAIRE

Wei Liu; Wei Liu; Wei Liu; Junling Zhang; Stuart L Norris; Phil Murray

2016-01-01

In order to determine the interactive effect of reseeding, herbicide spraying and ploughing on soil fauna communities, we conducted a grassland reseeding experiment combined with pre-reseed management to examine how with the whole reseeding process affects soil faunal composition. Sampling occasions and exact treatments were as follows: 1) before chemical herbicide spray; 2) after spray but before ploughing; 3) after ploughing but before reseeding; and 4) after one year of recovery. Our resul...

Microbial communities in blueberry soils

Science.gov (United States)

Microbial communities thrive in the soil of the plant root zone and it is clear that these communities play a role in plant health. Although blueberry fields can be productive for decades, yields are sometimes below expectations and fields that are replanted sometimes underperform and/or take too lo...

Soil degradation in Pakistan

International Nuclear Information System (INIS)

Khan, M.R.

2005-01-01

This paper diagnoses the issues involved behind the current state, usage, interactions and linkages in the soils in Pakistan. The condition of soils is deteriorating due to developmental and environmental factors such as soil degradation, water pollution, fauna degeneration etc. Issues, problems and constraints faced in the management and usage of soils are diagnosed at different levels in the ecosystems predominant in Pakistan. The research questions propose effective solutions, types of instruments, methods or processes to resolve the issues within the various areas or ecosystems in the most sustainable and effective manner [23]. Biological solutions and methods can be applied at the sub-system level by private individuals or communities at a lower cost, and at a more localized level than engineering methods. Engineering methods may be suited for interventions at a system level rather than at a sub-system level; but even at this level they will be complementary with biological methods. (author)

Molecular characterization of soil bacterial community in a perhumid, low mountain forest.

Science.gov (United States)

Lin, Yu-Te; Whitman, William B; Coleman, David C; Chih-Yu, Chiu

2011-01-01

Forest disturbance often results in changes in soil properties and microbial communities. In the present study, we characterized a soil bacterial community subjected to disturbance using 16S rRNA gene clone libraries. The community was from a disturbed broad-leaved, low mountain forest ecosystem at Huoshaoliao (HSL) located in northern Taiwan. This locality receives more than 4,000 mm annual precipitation, one of the highest precipitations in Taiwan. Based on the Shannon diversity index, Chao1 estimator, richness and rarefaction curve analysis, the bacterial community in HSL forest soils was more diverse than those previously investigated in natural and disturbed forest soils with colder or less humid weather conditions. Analysis of molecular variance also revealed that the bacterial community in disturbed soils significantly differed from natural forest soils. Most of the abundant operational taxonomic units (OTUs) in the disturbed soil community at HSL were less abundant or absent in other soils. The disturbances influenced the composition of bacterial communities in natural and disturbed forests and increased the diversity of the disturbed forest soil community. Furthermore, the warmer and humid weather conditions could also increase community diversity in HSL soils.

Soil Temperature and Moisture Effects on Soil Respiration and Microbial Community Abundance

Science.gov (United States)

2015-04-13

Bárcenas-Moreno, G., M. Gómez-Brandón, J. Rousk, and E. Bååth. 2009. Adaptation of soil microbial communities to temperature: Comparison of fungi and...ER D C/ CR RE L TR -1 5- 6 ERDC 6.2 Geospatial Research and Engineering (GRE) ARTEMIS TSP-SA Soil Temperature and Moisture Effects on... Soil Respiration and Microbial Community Abundance Co ld R eg io ns R es ea rc h an d En gi ne er in g La bo ra to ry Robyn A. Barbato

Interactions between fauna and environment in recent alluvial soils (Dunajec River, SE Poland)

Science.gov (United States)

Mikuś, Paweł; Uchman, Alfred

2017-04-01

Recent riverine system is a particular place for interactions between fauna and the deposited sediments containing young and old alluvial soils. It is characterized by large energy gradients in relatively short time, which forces special adaptations of burrowing animals recorded in bioturbation structures. Predators produce mainly shelter burrows (interpreted as domichnia), and saprofags, especially earthworms, produce locomotion and feeding structures (pascichnia). Such structures have been studied in non- or poorly vegetated, sandy or muddy Holocene alluvia in the lower reach of the Dunajec River flowing through the Carpathian Foredeep in SE Poland. The observed burrows are mostly produced by a variety of organisms, including the European mole (Talpa europaea), common earthworm (Lumbricus terrestris), ground beetles (Carabidae), solitary bees (Ammophila), red fox (Vulpes vulpes), European beaver (Castor fiber), shrews (Soricidae), European otter (Lutra lutra), several species of mice (Muridae), voles (Myodae, Microtae), and the swallow sand martin (Riparia riparia). Burrows of a few species of ground beetles have been subjected to more detailed studies. Fertile deposits of older (early to middle Holocene) terraces, formed with many long-term interruptions in sedimentation processes, have a well-developed soil levels, more vulnerable to burrowing than recently deposited sediments. The terraces contain layers of sands and muds, which primary sedimentary structures and layer boundaries are completely or partly disturbed by bioturbation. Organic-rich muds have been moved up and down and mixed with sand. Moreover, sediments have been leached into open burrows during floods or rainfalls. In the natural levee sediments, mostly fine to medium sands, are horizontally burrowed, foremost by earthworms (Lumbricidae). Vertical, long (over 2 m deep) burrows of larger earthworms cross cut the natural levee sediments and enter buried soils. They were formed during a long period

Networks of soil biota in a secondary succession gradient: Is it biodiversity or network structure that determines soil function?

Science.gov (United States)

Morriën, Elly; Hannula, Emilia; Snoek, Basten; Hol, Gera; van Veen, Hans; van der Putten, Wim

2017-04-01

experiment we did a field sampling of intact soil cores within the same chronosequence of ex-arable fields. We identified bacteria and fungi by pyrosequencing, while archaea were identified using TRFLP. The protists, micro-fauna, nematodes, enchytraeids and earthworms were extracted and morphologically identified until high taxonomic levels, often species level. In total, around 15 000 species were identified from the soils. We created a Spearman-rank correlation matrix based on abundance data of species which we visualized in a network categorized as recent, mid-term and long-term abandoned fields as an overview of the soil community present. After stable isotope probing using similar methods the soil food web structure was resolved by identifying the microbes using phospholipid markers and identifying soil fauna by morphology into similar groups as for the network analysis, both combined with isotopic measurements. We show that structural changes in the food web topology also leads to functional changes in the soil food web which can act as a driving force during land use change after human disturbance.

Soil fauna: key to new carbon models

OpenAIRE

Filser, Juliane; Faber, Jack H.; Tiunov, Alexei V.; Brussaard, Lijbert; Frouz, Jan; Deyn, Gerlinde; Uvarov, Alexei V.; Berg, Matty P.; Lavelle, Patrick; Loreau, Michel; Wall, Diana H.; Querner, Pascal; Eijsackers, Herman; Jiménez, Juan José

2016-01-01

Soil organic matter (SOM) is key to maintaining soil fertility, mitigating climate change, combatting land degradation, and conserving above- and below-ground biodiversity and associated soil processes and ecosystem services. In order to derive management options for maintaining these essential services provided by soils, policy makers depend on robust, predictive models identifying key drivers of SOM dynamics. Existing SOM models and suggested guidelines for future SOM modelling are defined ...

Impact of Grassland Reseeding, Herbicide Spraying and Ploughing on Diversity and Abundance of Soil Arthropods.

Science.gov (United States)

Liu, Wei; Zhang, Junling; Norris, Stuart L; Murray, Philip J

2016-01-01

In order to determine the interactive effect of reseeding, herbicide spraying and ploughing on soil fauna communities, we conducted a grassland reseeding experiment combined with pre-reseed management to examine how with the whole reseeding process affects soil faunal composition. Sampling occasions and exact treatments were as follows: (1) before chemical herbicide spray; (2) after spray but before ploughing; (3) after ploughing but before reseeding; and (4) after 1 year of recovery. Our results demonstrate that, Acari and Collembola were the two soil fauna taxa with the highest abundance and accounted for around 96% of the relative total abundance among the various managements. Herbicide application tended to increase soil invertebrate abundance. Conversely, subsequent ploughing significantly reduced soil invertebrate abundance and had an obvious negative effect on soil primary and secondary decomposers, which were mainly due to the variations of Acari (especially Oribatida) and Coleoptera group abundance. Moreover, reseeding also reduced the individual number of the groups mentioned above, and favored those predators with a larger body size and individual weight. After 1 year recovery, Collembola abundance recovered to the pre-treatment levels, while with Arthropod and Acari groups were still fluctuating.

Impact of Grassland Reseeding, Herbicide spraying and Ploughing on Diversity and Abundance of Soil Arthropods.

Directory of Open Access Journals (Sweden)

Wei Liu

2016-08-01

Full Text Available In order to determine the interactive effect of reseeding, herbicide spraying and ploughing on soil fauna communities, we conducted a grassland reseeding experiment combined with pre-reseed management to examine how with the whole reseeding process affects soil faunal composition. Sampling occasions and exact treatments were as follows: 1 before chemical herbicide spray; 2 after spray but before ploughing; 3 after ploughing but before reseeding; and 4 after one year of recovery. Our results demonstrate that, Acari and Collembola were the two soil fauna taxa with the highest abundance and accounted for around 96% of the relative total abundance among the various managements. Herbicide application tended to increase soil invertebrate abundance. Conversely, subsequent ploughing significantly reduced soil invertebrate abundance and had an obvious negative effect on soil primary and secondary decomposers, which were mainly due to the variations of Acari (especially Oribatida and Coleoptera group abundance. Moreover, reseeding also reduced the individual number of the groups mentioned above, and favoured those predators with a larger body size and individual weight. After one year recovery, Collembola abundance recovered to the pre-treatment levels, while with Arthropod and Acari groups were still fluctuating.

Impact of Grassland Reseeding, Herbicide Spraying and Ploughing on Diversity and Abundance of Soil Arthropods

Science.gov (United States)

Liu, Wei; Zhang, Junling; Norris, Stuart L.; Murray, Philip J.

2016-01-01

In order to determine the interactive effect of reseeding, herbicide spraying and ploughing on soil fauna communities, we conducted a grassland reseeding experiment combined with pre-reseed management to examine how with the whole reseeding process affects soil faunal composition. Sampling occasions and exact treatments were as follows: (1) before chemical herbicide spray; (2) after spray but before ploughing; (3) after ploughing but before reseeding; and (4) after 1 year of recovery. Our results demonstrate that, Acari and Collembola were the two soil fauna taxa with the highest abundance and accounted for around 96% of the relative total abundance among the various managements. Herbicide application tended to increase soil invertebrate abundance. Conversely, subsequent ploughing significantly reduced soil invertebrate abundance and had an obvious negative effect on soil primary and secondary decomposers, which were mainly due to the variations of Acari (especially Oribatida) and Coleoptera group abundance. Moreover, reseeding also reduced the individual number of the groups mentioned above, and favored those predators with a larger body size and individual weight. After 1 year recovery, Collembola abundance recovered to the pre-treatment levels, while with Arthropod and Acari groups were still fluctuating. PMID:27555863

Soil fauna: key to new carbon models

NARCIS (Netherlands)

Filser, Juliane; Faber, J.H.; Tiunov, Alexei V.; Brussaard, L.; Frouz, J.; Deyn, de G.B.; Uvarov, Alexei V.; Berg, Matty P.; Lavelle, Patrick; Loreau, M.; Wall, D.H.; Querner, Pascal; Eijsackers, Herman; Jimenez, Juan Jose

2016-01-01

Soil organic matter (SOM) is key to maintaining soil fertility, mitigating climate change, combatting land degradation, and conserving above- and below-ground biodiversity and associated soil processes and ecosystem services. In order to derive management options for maintaining these essential

Soil Organic Matter and Soil Productivity: Searching for the Missing Link

Science.gov (United States)

Felipe G. Sanchez

1998-01-01

Soil-organic matter (SOM) is a complex array of components including soil fauna and flora at different stages of decomposition (Berg et al., 1982). Its concentration in soils can vary from 0.5% in mineral soils to almost 100% in peat soils (Brady, 1974). Organic matter (OM) in the surface mineral soil is considered a major determinant of forest ecosystem productivity...

The Impact of Hydration and Temperature on Bacterial Diversity in Arid Soil Mesocosms

Directory of Open Access Journals (Sweden)

Adam Št'ovíček

2017-06-01

Full Text Available Hot desert ecosystems experience rare and unpredictable rainfall events that resuscitate the arid flora and fauna. However, the effect of this sudden abundance of water on soil microbial communities is still under debate. We modeled varying rainfall amounts and temperatures in desert soil mesocosms and monitored the microbial community response over a period of 21 days. We studied two different wetting events, simulating heavy (50 mm and light (10 mm rain, as well as three different temperature regimes: constant 25° or 36°C, or a temperature diurnal cycle alternating between 36 and 10 °C. Amplicon sequencing of the bacterial ribosomal RNA revealed that rain intensity affects the soil bacterial community, but the effects are mitigated by temperature. The combination of water-pulse intensity with lower temperature had the greatest effect on the bacterial community. These experiments demonstrated that the soil microbial response to rain events is dependent not only on the intensity of the water pulse but also on the ambient temperature, thus emphasizing the complexity of bacterial responses to highly unpredictable environments.

Protist community in soil: Effects of different land-use types

DEFF Research Database (Denmark)

Santos, Susana; Schöler, Anne; Winding, Anne

Soil protist microorganisms represent an important part of the soil microbial community being major players in providing ecosystem services. Changes in their community structure and dynamics may influence the rate and kind of soil formation and fertility. Corroborative studies indicate that protist...... microorganisms exhibit high levels of molecular and functional diversity in soils. However, studies questioning the protist diversity in soil and their variability across different soil land-use types, have received far less attention. The purpose of our study was to obtain relative abundances of flagellate......, cilliates and amoeboid soil protists, and to relate the expected changes in community composition to space and land-use. Within the EU FP7 project EcoFINDERS, soils were collected from six long-term observatories (LTO’s) scattered around Europe, covering different climatic zones and different vegetation...

Effects of soil depth and plant-soil interaction on microbial community in temperate grasslands of northern China.

Science.gov (United States)

Yao, Xiaodong; Zhang, Naili; Zeng, Hui; Wang, Wei

2018-07-15

Although the patterns and drivers of soil microbial community composition are well studied, little is known about the effects of plant-soil interactions and soil depth on soil microbial distribution at a regional scale. We examined 195 soil samples from 13 sites along a climatic transect in the temperate grasslands of northern China to measure the composition of and factors influencing soil microbial communities within a 1-m soil profile. Soil microbial community composition was measured using phospholipid fatty acids (PLFA) analysis. Fungi predominated in topsoil (0-10 cm) and bacteria and actinomycetes in deep soils (40-100 cm), independent of steppe types. This variation was explained by contemporary environmental factors (including above- and below-ground plant biomass, soil physicochemical and climatic factors) >58% in the 0-40 cm of soil depth, but soils. Interestingly, when we considered the interactive effects between plant traits (above ground biomass and root biomass) and soil factors (pH, clay content, and soil total carbon, nitrogen, phosphorous), we observed a significant interaction effect occurring at depths of 10-20 cm soil layer, due to different internal and external factors of the plant-soil system along the soil profile. These results improve understanding of the drivers of soil microbial community composition at regional scales. Copyright © 2018 Elsevier B.V. All rights reserved.

Soil Microbial Community Successional Patterns during Forest Ecosystem Restoration ▿†

Science.gov (United States)

Banning, Natasha C.; Gleeson, Deirdre B.; Grigg, Andrew H.; Grant, Carl D.; Andersen, Gary L.; Brodie, Eoin L.; Murphy, D. V.

2011-01-01

Soil microbial community characterization is increasingly being used to determine the responses of soils to stress and disturbances and to assess ecosystem sustainability. However, there is little experimental evidence to indicate that predictable patterns in microbial community structure or composition occur during secondary succession or ecosystem restoration. This study utilized a chronosequence of developing jarrah (Eucalyptus marginata) forest ecosystems, rehabilitated after bauxite mining (up to 18 years old), to examine changes in soil bacterial and fungal community structures (by automated ribosomal intergenic spacer analysis [ARISA]) and changes in specific soil bacterial phyla by 16S rRNA gene microarray analysis. This study demonstrated that mining in these ecosystems significantly altered soil bacterial and fungal community structures. The hypothesis that the soil microbial community structures would become more similar to those of the surrounding nonmined forest with rehabilitation age was broadly supported by shifts in the bacterial but not the fungal community. Microarray analysis enabled the identification of clear successional trends in the bacterial community at the phylum level and supported the finding of an increase in similarity to nonmined forest soil with rehabilitation age. Changes in soil microbial community structure were significantly related to the size of the microbial biomass as well as numerous edaphic variables (including pH and C, N, and P nutrient concentrations). These findings suggest that soil bacterial community dynamics follow a pattern in developing ecosystems that may be predictable and can be conceptualized as providing an integrated assessment of numerous edaphic variables. PMID:21724890

Changes in the Bacterial Community Structure of Remediated Anthracene-Contaminated Soils

Science.gov (United States)

Delgado-Balbuena, Laura; Bello-López, Juan M.; Navarro-Noya, Yendi E.; Rodríguez-Valentín, Analine; Luna-Guido, Marco L.; Dendooven, Luc

2016-01-01

Mixing soil or adding earthworms (Eisenia fetida (Savigny, 1826)) accelerated the removal of anthracene, a polycyclic aromatic hydrocarbon, from a pasture and an arable soil, while a non-ionic surfactant (Surfynol® 485) inhibited the removal of the contaminant compared to the untreated soil. It was unclear if the treatments affected the soil bacterial community and consequently the removal of anthracene. Therefore, the bacterial community structure was monitored by means of 454 pyrosequencing of the 16S rRNA gene in the pasture and arable soil mixed weekly, amended with Surfynol® 485, E. fetida or organic material that served as food for the earthworms for 56 days. In both soils, the removal of anthracene was in the order: mixing soil weekly (100%) > earthworms applied (92%) > organic material applied (77%) > untreated soil (57%) > surfactant applied (34%) after 56 days. There was no clear link between removal of anthracene from soil and changes in the bacterial community structure. On the one hand, application of earthworms removed most of the contaminant from the arable soil and had a strong effect on the bacterial community structure, i.e. a decrease in the relative abundance of the Acidobacteria, Chloroflexi and Gemmatimonadetes, and an increase in that of the Proteobacteria compared to the unamended soil. Mixing the soil weekly removed all anthracene from the arable soil, but had little or no effect on the bacterial community structure. On the other hand, application of the surfactant inhibited the removal of anthracene from the arable soil compared to the untreated soil, but had a strong effect on the bacterial community structure, i.e. a decrease in the relative abundance of Cytophagia (Bacteroidetes), Chloroflexi, Gemmatimonadetes and Planctomycetes and an increase in that of the Flavobacteria (Bacteroidetes) and Proteobacteria. Additionally, the removal of anthracene was similar in the different treatments of both the arable and pasture soil, but the

Changes in the Bacterial Community Structure of Remediated Anthracene-Contaminated Soils.

Directory of Open Access Journals (Sweden)

Laura Delgado-Balbuena

Full Text Available Mixing soil or adding earthworms (Eisenia fetida (Savigny, 1826 accelerated the removal of anthracene, a polycyclic aromatic hydrocarbon, from a pasture and an arable soil, while a non-ionic surfactant (Surfynol® 485 inhibited the removal of the contaminant compared to the untreated soil. It was unclear if the treatments affected the soil bacterial community and consequently the removal of anthracene. Therefore, the bacterial community structure was monitored by means of 454 pyrosequencing of the 16S rRNA gene in the pasture and arable soil mixed weekly, amended with Surfynol® 485, E. fetida or organic material that served as food for the earthworms for 56 days. In both soils, the removal of anthracene was in the order: mixing soil weekly (100% > earthworms applied (92% > organic material applied (77% > untreated soil (57% > surfactant applied (34% after 56 days. There was no clear link between removal of anthracene from soil and changes in the bacterial community structure. On the one hand, application of earthworms removed most of the contaminant from the arable soil and had a strong effect on the bacterial community structure, i.e. a decrease in the relative abundance of the Acidobacteria, Chloroflexi and Gemmatimonadetes, and an increase in that of the Proteobacteria compared to the unamended soil. Mixing the soil weekly removed all anthracene from the arable soil, but had little or no effect on the bacterial community structure. On the other hand, application of the surfactant inhibited the removal of anthracene from the arable soil compared to the untreated soil, but had a strong effect on the bacterial community structure, i.e. a decrease in the relative abundance of Cytophagia (Bacteroidetes, Chloroflexi, Gemmatimonadetes and Planctomycetes and an increase in that of the Flavobacteria (Bacteroidetes and Proteobacteria. Additionally, the removal of anthracene was similar in the different treatments of both the arable and pasture soil

Soil bacterial community shifts associated with sugarcane straw removal

Science.gov (United States)

Pimentel, Laisa; Gumiere, Thiago; Andreote, Fernando; Cerri, Carlos

2017-04-01

In Brazil, the adoption of the mechanical unburned sugarcane harvest potentially increase the quantity of residue left in the field after harvesting. Economically, this material has a high potential for second generation ethanol (2G) production. However, crop residues have an essential role in diverse properties and processes in the soil. The greater part of the uncertainties about straw removal for 2G ethanol production is based on its effects in soil microbial community. In this sense, it is important to identify the main impacts of sugarcane straw removal on soil microbial community. Therefore, we conducted a field study, during one year, in Valparaíso (São Paulo state - Brazil) to evaluate the effects of straw decomposition on soil bacterial community. Specifically, we wanted: i) to compare the rates of straw removal and ii) to evaluate the effects of straw decomposition on soil bacterial groups over one year. The experiment was in a randomized block design with treatments arranged in strip plot. The treatments are different rates of sugarcane straw removal, namely: no removal, 50, 75 and 100% of straw removal. Soil sampling was carried out at 0, 4, 8 and 12 months after the sugarcane harvest (August 2015). Total DNA was extracted from soil using the PowersoilTM DNA Isolation kit. And the abundance of bacterial in each soil sample was estimated via quantification of 16S rRNA gene. The composition of the bacterial communities was estimated via terminal restriction fragment length polymorphism (T-RFLP) analysis, and the T-RF sizes were performed on a 3500 Genetic Analyzer. Finally, the results were examined with GeneMapper 4.1 software. There was bacterial community shifts through the time and among the rates of sugarcane straw removal. Bacterial community was firstly determined by the time scale, which explained 29.16% of total variation. Rates of straw removal explained 11.55% of shifts on bacterial community. Distribution through the time is an important

Soil microbial communities and glyphosate decay in soils with different herbicide application history.

Science.gov (United States)

Guijarro, Keren Hernández; Aparicio, Virginia; De Gerónimo, Eduardo; Castellote, Martín; Figuerola, Eva L; Costa, José Luis; Erijman, Leonardo

2018-04-11

This study evaluates the glyphosate dissipation under field conditions in three types of soil, and aims to determine the importance of the following factors in the environmental persistence of herbicide: i) soil bacterial communities, ii) soil physicochemical properties, iii) previous exposure to the herbicide. A soil without previous record of GP application (P0) and two agricultural soils, with 5 and >10years of GP exposure (A5 and A10) were subjected to the application of glyphosate at doses of 3mg·kg -1 . The concentration of GP and AMPA was determined over time and the dynamics of soil bacterial communities was evaluated using 16S ARN ribosomal gene amplicon-sequencing. The GP exposure history affected the rate but not the extent of GP biodegradation. The herbicide was degraded rapidly, but P0 soil showed a dissipation rate significantly lower than soils with agricultural history. In P0 soil, a significant increase in the relative abundance of Bacteroidetes was observed in response to herbicide application. More generally, all soils displayed shifts in bacterial community structure, which nevertheless could not be clearly associated to glyphosate dissipation, suggesting the presence of redundant bacteria populations of potential degraders. Yet the application of the herbicide prompted a partial disruption of the bacterial association network of unexposed soil. On the other hand, higher values of linear (Kd) and nonlinear (Kf) sorption coefficient in P0 point to the relevance of cation exchange capacity (CEC), clay and organic matter to the capacity of soil to adsorb the herbicide, suggesting that bioavailability was a key factor for the persistence of GP and AMPA. These results contribute to understand the relationship between bacterial taxa exposed to the herbicide, and the importance of soil properties as predictors of the possible rate of degradation and persistence of glyphosate in soil. Copyright © 2018 Elsevier B.V. All rights reserved.

Soil inoculation with microbial communities - can this become a useful tool in soil remediation?

Science.gov (United States)

Krug, Angelika; Wang, Fang; Dörfler, Ulrike; Munch, Jean Charles; Schroll, Reiner

2010-05-01

We artificially loaded different type of agricultural soils with model 14C-labelled chemicals, and we inoculated such soils with different microbial communities as well as isolated strains to enhance the mineralization of such chemicals. Inocula were introduced by different approaches: (i) soil inocula, (ii) application of isolated strain as well as microbial community via media, (iii) isolated strain as well as microbial community attached to a carrier material. Most of the inoculation experiments were conducted in laboratory but we also tested one of these approaches under real environmental conditions in lysimeters and we could show that the approach was successful. We already could show that inoculating soils with microbial communities attached on a specific carrier material shows the highest mineralization effectiveness and also the highest sustainability. Microbes attached on clay particles preserved their function over a long time period even if the specific microbial substrate was already degraded or at least not detectable any more. Additionally we already could show that in specific cases some soil parameters might reduce the effectiveness of such an approach. Results on isoproturon as a model for phenylurea-herbicides and 1,2,4-trichlorobenzene as an example for an industrially used chemical as well as the corresponding chemicals` degrading microbial communities and isolated strain will be presented.

Legacy effects of anaerobic soil disinfestation on soil bacterial community composition and production of pathogen-suppressing volatiles

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Maaike evan Agtmaal

2015-07-01

Full Text Available There is increasing evidence that microbial volatiles (VOCs play an important role in natural suppression of soil-borne diseases, but little is known on the factors that influence production of suppressing VOCs. In the current study we examined whether a stress-induced change in soil microbial community composition would affect the production by soils of VOCs suppressing the plant-pathogenic oomycete Pythium. Using pyrosequencing of 16S ribosomal gene fragments we compared the composition of bacterial communities in sandy soils that had been exposed to anaerobic disinfestation (AD, a treatment used to kill harmful soil organisms, with the composition in untreated soils. Three months after the AD treatment had been finished, there was still a clear legacy effect of the former anaerobic stress on bacterial community composition with a strong increase in relative abundance of the phylum Bacteroidetes and a significant decrease of the phyla Acidobacteria, Planctomycetes, Nitrospirae, Chloroflexi and Chlorobi. This change in bacterial community composition coincided with loss of production of Pythium suppressing soil volatiles (VOCs and of suppression of Pythium impacts on Hyacinth root development. One year later, the composition of the bacterial community in the AD soils was reflecting that of the untreated soils. In addition, both production of Pythium-suppressing VOCs and suppression of Pythium in Hyacinth bioassays had returned to the levels of the untreated soil. GC/MS analysis identified several VOCs, among which compounds known to be antifungal, that were produced in the untreated soils but not in the AD soils. These compounds were again produced 15 months after the AD treatment. Our data indicate that soils exposed to a drastic stress can temporarily lose pathogen suppressive characteristics and that both loss and return of these suppressive characteristics coincides with shifts in the soil bacterial community composition. Our data are

Plant stimulation of soil microbial community succession: how sequential expression mediates soil carbon stabilization and turnover

Energy Technology Data Exchange (ETDEWEB)

Firestone, Mary [Univ. of California, Berkeley, CA (United States)

2015-03-31

It is now understood that most plant C is utilized or transformed by soil microorganisms en route to stabilization. Hence the composition of microbial communities that mediate decomposition and transformation of root C is critical, as are the metabolic capabilities of these communities. The change in composition and function of the C-transforming microbial communities over time in effect defines the biological component of soil C stabilization. Our research was designed to test 2 general hypotheses; the first two hypotheses are discussed first; H1: Root-exudate interactions with soil microbial populations results in the expression of enzymatic capacities for macromolecular, complex carbon decomposition; and H2: Microbial communities surrounding roots undergo taxonomic succession linked to functional gene activities as roots grow, mature, and decompose in soil. Over the term of the project we made significant progress in 1) quantifying the temporal pattern of root interactions with the soil decomposing community and 2) characterizing the role of root exudates in mediating these interactions.

Soil bacterial community responses to global changes

DEFF Research Database (Denmark)

Bergmark, Lasse

competing and very contrasting plant types (Calluna and Deschampsia) dominated the vegetation. This led to Manuscript 3 where the impact and responses of the climate change manipulations on the microbial community composition was investigated under the contrasting vegetation types. Our results show a high......Soil bacteria and archaea are essential for ecosystem functioning and plant growth through their degradation of organic matter and turnover of nutrients. But since the majority of soil bacteria and archaea are unclassified and “nonculturable” the functionality of the microbial community and its...... overall importance for ecosystem function in soil is poorly understood. Global change factors may affect the diversity and functioning of soil prokaryotes and thereby ecosystem functioning. To gain a better understanding of the effects of global changes it is of fundamental importance to classify...

Mechanisms of pollution induced community tolerance in a soil microbial community exposed to Cu

International Nuclear Information System (INIS)

Wakelin, Steven; Gerard, Emily; Black, Amanda; Hamonts, Kelly; Condron, Leo; Yuan, Tong; Nostrand, Joy van; Zhou, Jizhong; O'Callaghan, Maureen

2014-01-01

Pollution induced community tolerance (PICT) to Cu 2+ , and co-tolerance to nanoparticulate Cu, ionic silver (Ag + ), and vancomycin were measured in field soils treated with Cu 2+ 15 years previously. EC 50 values were determined using substrate induced respiration and correlations made against soil physicochemical properties, microbial community structure, physiological status (qCO 2 ; metabolic quotient), and abundances of genes associated with metal and antibiotic resistance. Previous level of exposure to copper was directly (P  2+ , and also of nanoparticle Cu. However, Cu-exposed communities had no co-tolerance to Ag + and had increased susceptibly to vancomycin. Increased tolerance to both Cu correlated (P  + or vancomycin. • Tolerance not due to shifts in community composition or resistance genes. - Pollution induced community tolerance to Cu was linked with increased metabolic quotient but not changes in community composition or abundance of metal resistance genes in a field soil

Soil bacterial and fungal community responses to nitrogen addition across soil depth and microhabitat in an arid shrubland

Science.gov (United States)

Mueller, Rebecca C.; Belnap, Jayne; Kuske, Cheryl R.

2015-01-01

Arid shrublands are stressful environments, typified by alkaline soils low in organic matter, with biologically-limiting extremes in water availability, temperature, and UV radiation. The widely-spaced plants and interspace biological soil crusts in these regions provide soil nutrients in a localized fashion, creating a mosaic pattern of plant- or crust-associated microhabitats with distinct nutrient composition. With sporadic and limited rainfall, nutrients are primarily retained in the shallow surface soil, patterning biological activity. We examined soil bacterial and fungal community responses to simulated nitrogen (N) deposition in an arid Larrea tridentata-Ambrosia dumosa field experiment in southern Nevada, USA, using high-throughput sequencing of ribosomal RNA genes. To examine potential interactions among the N application, microhabitat and soil depth, we sampled soils associated with shrub canopies and interspace biological crusts at two soil depths (0–0.5 or 0–10 cm) across the N-amendment gradient (0, 7, and 15 kg ha−1 yr−1). We hypothesized that localized compositional differences in soil microbiota would constrain the impacts of N addition to a microhabitat distribution that would reflect highly localized geochemical conditions and microbial community composition. The richness and community composition of both bacterial and fungal communities differed significantly by microhabitat and with soil depth in each microhabitat. Only bacterial communities exhibited significant responses to the N addition. Community composition correlated with microhabitat and depth differences in soil geochemical features. Given the distinct roles of soil bacteria and fungi in major nutrient cycles, the resilience of fungi and sensitivity of bacteria to N amendments suggests that increased N input predicted for many arid ecosystems could shift nutrient cycling toward pathways driven primarily by fungal communities.

Vertebrate herbivores influence soil nematodes by modifying plant communities

NARCIS (Netherlands)

Veen, G. F. (Ciska); Olff, Han; Duyts, Henk; van der Putten, Wim H.

Abiotic soil properties, plant community composition, and herbivory all have been reported as important factors influencing the composition of soil communities. However, most studies thus far have considered these factors in isolation, whereas they strongly interact in the field. Here, we study how

Soil macrofauna affect crop nitrogen and water use efficiencies in semi-arid West Africa.

NARCIS (Netherlands)

Ouédraogo, E.; Mando, A.; Brussaard, L.

2006-01-01

It is increasingly recognised that soil fauna have a significant role in soil processes affecting nutrient availability and crop performance. A field experiment was conducted in southern Burkina Faso (West Africa) to investigate the contribution of soil fauna to nutrient availability and crop

Recovery of Soil Microbial Community Structure in a Wildfire Impacted Forest Soil

Science.gov (United States)

Tate, Robert, III; Mikita, Robyn

2010-05-01

Wildfires are common disturbances that will increase in frequency and intensity as a result of conditions associated with the changing climate. In turn, forest fires exacerbate climate conditions by increasing carbon and atmospheric aerosols, and changing the surface albedo. Fires have significant economic, environmental, and ecological repercussions; however, we have a limited understanding on the effect of severe wildfires on the composition, diversity, and function of belowground microorganisms. The objective of this research was to examine the shift of the forest soil microbial community as a result of a severe wildfire in the New Jersey Pinelands. Over the span of two years following the fire, soil samples from the organic and mineral layers of the severely burned sites were collected six times. Samples were also collected twice from an unburned control site. It was hypothesized that soil microbial communities from severely burned samples collected shortly after the fire would be significantly different from (1) the unburned samples that serve as controls and (2) the severely burned samples collected more than a year after the fire. Microbial community composition was analyzed by principal component analysis and multivariate analysis of variance of molecular fingerprint data from denaturing gradient gel electrophoresis of bacterial and archaeal-specific amplicons. Bacterial community composition was significantly different among all the organic and mineral layer samples collected 2, 5, 13, and 17 months following the fire. This indicated a shift in the bacterial communities with time following the fire. Common phylotypes from the burned organic layer samples collected 2 months after the fire related closely to members of the phyla Cyanobacteria and Acidobacteria, whereas those from later samples (5, 13, and 17 months following the fire) were closely related to members of the genus Mycobacteria. Canonical correlation analysis was used to determine connections

Dynamics of bacterial communities in two unpolluted soils after spiking with phenanthrene: soil type specific and common responders

Directory of Open Access Journals (Sweden)

Guo-Chun eDing

2012-08-01

Full Text Available Considering their key role for ecosystem processes, it is important to understand the response of microbial communities in unpolluted soils to pollution with polycyclic aromatic hydrocarbons (PAH. Phenanthrene, a model compound for PAH, was spiked to a Cambisol and a Luvisol soil. Total community DNA from phenanthrene-spiked and control soils collected on days 0, 21 and 63 were analyzed based on PCR-amplified 16S rRNA genefragments. Denaturing gradient gel electrophoresis (DGGE fingerprints of bacterial communities increasingly deviated with time between spiked and control soils. In taxon specific DGGE, significant responses of Alphaproteobacteria and Actinobacteria became only detectable after 63 days, while significant effects on Betaproteobacteria were detectable in both soils after 21 days. Comparison of the taxonomic distribution of bacteria in spiked and control soils on day 63 as revealed by pyrosequencing indicated soil type specific negative effects of phenanthrene on several taxa, many of them belonging to the Gamma-, Beta- or Deltaproteobacteria. Bacterial richness and evenness decreased in spiked soils. Despite the significant differences in the bacterial community structure between both soils on day 0, similar genera increased in relative abundance after PAH spiking, especially Sphingomonas and Polaromonas. However, this did not result in an increased overall similarity of the bacterial communities in both soils.

Soil bacterial and fungal community responses to nitrogen addition across soil depths and microhabitat in an arid shrubland

Directory of Open Access Journals (Sweden)

Rebecca C Mueller

2015-09-01

Full Text Available Arid shrublands are stressful environments, typified by alkaline soils low in organic matter, with biologically-limiting extremes in water availability, temperature and UV radiation. The widely-spaced plants and interspace biological soil crusts in these regions provide soil nutrients in a localized fashion, creating a mosaic pattern of plant- or crust-associated microhabitats with distinct nutrient composition. With sporadic and limited rainfall, nutrients are primarily retained in the shallow surface soil, patterning biological activity. We examined soil bacterial and fungal community responses to simulated nitrogen (N deposition in an arid Larrea tridentata-Ambrosia dumosa field experiment in southern Nevada, USA, using high-throughput sequencing of ribosomal RNA genes. To examine potential interactions among the N application, microhabitat and soil depth, we sampled soils associated with shrub canopies and interspace biological crusts at two soil depths (0-0.5 cm or 0-10 cm across the N-amendment gradient (0, 7 and 15 kg ha-1 yr-1. We hypothesized that localized compositional differences in soil microbiota would constrain the impacts of N addition to a microhabitat distribution that would reflect highly localized geochemical conditions and microbial community composition. The richness and community composition of both bacterial and fungal communities differed significantly by microhabitat and with soil depth in each microhabitat. Only bacterial communities exhibited significant responses to the N addition. Community composition correlated with microhabitat and depth differences in soil geochemical features. Given the distinct roles of soil bacteria and fungi in major nutrient cycles, the resilience of fungi and sensitivity of bacteria to N amendments suggests that increased N input predicted for many arid ecosystems could shift nutrient cycling toward pathways driven primarily by fungal communities.

Habitat constraints on the functional significance of soil microbial communities

Science.gov (United States)

Nunan, Naoise; Leloup, Julie; Ruamps, Léo; Pouteau, Valérie; Chenu, Claire

2017-04-01

An underlying assumption of most ecosystem models is that soil microbial communities are functionally equivalent; in other words, that microbial activity under given set of conditions is not dependent on the composition or diversity of the communities. Although a number of studies have suggested that this assumption is incorrect, ecosystem models can adequately describe ecosystem processes, such as soil C dynamics, without an explicit description of microbial functioning. Here, we provide a mechanistic basis for reconciling this apparent discrepancy. In a reciprocal transplant experiment, we show that microbial communities are not always functionally equivalent. The data suggest that when the supply of substrate is restricted, then the functioning of different microbial communities cannot be distinguished, but when the supply is less restricted, the intrinsic functional differences among communities can be expressed. When the supply of C is restricted then C dynamics are related to the properties of the physical and chemical environment of the soil. We conclude that soil C dynamics may depend on microbial community structure or diversity in environments such as the rhizosphere or the litter layer, but are less likely to do so in oligotrophic environments such as the mineral layers of soil.

Divergence of feeding channels within the soil food web determined by ecosystem type.

Science.gov (United States)

Crotty, Felicity V; Blackshaw, Rod P; Adl, Sina M; Inger, Richard; Murray, Philip J

2014-01-01

Understanding trophic linkages within the soil food web (SFW) is hampered by its opacity, diversity, and limited niche adaptation. We need to expand our insight between the feeding guilds of fauna and not just count biodiversity. The soil fauna drive nutrient cycling and play a pivotal, but little understood role within both the carbon (C) and nitrogen (N) cycles that may be ecosystem dependent. Here, we define the structure of the SFW in two habitats (grassland and woodland) on the same soil type and test the hypothesis that land management would alter the SFW in these habitats. To do this, we census the community structure and use stable isotope analysis to establish the pathway of C and N through each trophic level within the ecosystems. Stable isotope ratios of C and N from all invertebrates were used as a proxy for trophic niche, and community-wide metrics were obtained. Our empirically derived C/N ratios differed from those previously reported, diverging from model predictions of global C and N cycling, which was unexpected. An assessment of the relative response of the different functional groups to the change from agricultural grassland to woodland was performed. This showed that abundance of herbivores, microbivores, and micropredators were stimulated, while omnivores and macropredators were inhibited in the grassland. Differences between stable isotope ratios and community-wide metrics, highlighted habitats with similar taxa had different SFWs, using different basal resources, either driven by root or litter derived resources. Overall, we conclude that plant type can act as a top-down driver of community functioning and that differing land management can impact on the whole SFW.

Impact of Cropping Systems, Soil Inoculum, and Plant Species Identity on Soil Bacterial Community Structure.

Science.gov (United States)

Ishaq, Suzanne L; Johnson, Stephen P; Miller, Zach J; Lehnhoff, Erik A; Olivo, Sarah; Yeoman, Carl J; Menalled, Fabian D

2017-02-01

Farming practices affect the soil microbial community, which in turn impacts crop growth and crop-weed interactions. This study assessed the modification of soil bacterial community structure by organic or conventional cropping systems, weed species identity [Amaranthus retroflexus L. (redroot pigweed) or Avena fatua L. (wild oat)], and living or sterilized inoculum. Soil from eight paired USDA-certified organic and conventional farms in north-central Montana was used as living or autoclave-sterilized inoculant into steam-pasteurized potting soil, planted with Am. retroflexus or Av. fatua and grown for two consecutive 8-week periods to condition soil nutrients and biota. Subsequently, the V3-V4 regions of the microbial 16S rRNA gene were sequenced by Illumina MiSeq. Treatments clustered significantly, with living or sterilized inoculum being the strongest delineating factor, followed by organic or conventional cropping system, then individual farm. Living inoculum-treated soil had greater species richness and was more diverse than sterile inoculum-treated soil (observed OTUs, Chao, inverse Simpson, Shannon, P soil contained more Chloroflexi and Acidobacteria, while the sterile inoculum soil had more Bacteroidetes, Firmicutes, Gemmatimonadetes, and Verrucomicrobia. Organically farmed inoculum-treated soil had greater species richness, more diversity (observed OTUs, Chao, Shannon, P soil. Cyanobacteria were higher in pots growing Am. retroflexus, regardless of inoculum type, for three of the four organic farms. Results highlight the potential of cropping systems and species identity to modify soil bacterial communities, subsequently modifying plant growth and crop-weed competition.

a preliminary study of soil fung study of soil fungal diversity of dye

African Journals Online (AJOL)

userpc

of fungal species capable of surviving in dye-contaminated soils, a capability to ... soil, water, flora, fauna, livestock and hum population. ... Similarly, the impact of the discharged effluents from this .... Integrated water management and CP.

Resistance and Resilience of Soil Microbial Communities Exposed to Petroleum-Derived Compounds

DEFF Research Database (Denmark)

Modrzynski, Jakub Jan

Functioning of soil microbial communities is generally considered resilient to disturbance, including chemical stress. Activities of soil microbial communities are often sustained in polluted environments due to exceptional plasticity of microbial communities and functional redundancy. Pollution......-induced community tolerance (PICT) often develops following chemical stress. Nonetheless, environmental pollution may severely disturb functioning of soil microbial communities, thereby threatening provision of important ecosystem services provided by microorganisms. Pollution with petroleum and petroleum......-derived compounds (PDCs) is a significant environmental problem on a global scale. Research addressing interactions between microorganisms and PDC pollution is dominated by studies of biodegradation, with less emphasis on microbial ecotoxicology. Soil microbial communities are generally considered highly resilient...

Fauna do solo em áreas com Eucalyptus spp. E Pinus elliottii, Santa Maria, RS

Directory of Open Access Journals (Sweden)

Maria Izabel Jacques Soares

2001-01-01

Full Text Available This work started in the spring in 1996 and finished in the winter in 1997 and it had as its objective to study the populational survey of soil fauna in the Pinus elliotti and Eucalyptus spp. in areas situaded in “Campus” at Federal University of Santa Maria, Rio Grande do Sul, Brazil. An extractor was utilized to collect the soil from 10 sample points, in the 0-5, 5-10, 10-15 and 15-20 cm of soil depth, in each season of the year. With this study it was possible to identify some representants of Phylum Annelida and Arthropoda who belong to fauna-soil-vegetable context. The individual total, its percentile and number of individual for square meter were obtained. It was observed the predominance of Phylum Arthropoda and, in special, of Insecta class in the Eucalyptus spp. area; and the Phylum Annelida in the Pinus elliottii area. The depth variable originated mathematical models to explain the populational distribution for each studied areas. The seasons of year variable did not show a significative difference. It was not possible to establish a populational distribution model.

Divergent Responses of Forest Soil Microbial Communities under Elevated CO2 in Different Depths of Upper Soil Layers.

Science.gov (United States)

Yu, Hao; He, Zhili; Wang, Aijie; Xie, Jianping; Wu, Liyou; Van Nostrand, Joy D; Jin, Decai; Shao, Zhimin; Schadt, Christopher W; Zhou, Jizhong; Deng, Ye

2018-01-01

Numerous studies have shown that the continuous increase of atmosphere CO 2 concentrations may have profound effects on the forest ecosystem and its functions. However, little is known about the response of belowground soil microbial communities under elevated atmospheric CO 2 (eCO 2 ) at different soil depth profiles in forest ecosystems. Here, we examined soil microbial communities at two soil depths (0 to 5 cm and 5 to 15 cm) after a 10-year eCO 2 exposure using a high-throughput functional gene microarray (GeoChip). The results showed that eCO 2 significantly shifted the compositions, including phylogenetic and functional gene structures, of soil microbial communities at both soil depths. Key functional genes, including those involved in carbon degradation and fixation, methane metabolism, denitrification, ammonification, and nitrogen fixation, were stimulated under eCO 2 at both soil depths, although the stimulation effect of eCO 2 on these functional markers was greater at the soil depth of 0 to 5 cm than of 5 to 15 cm. Moreover, a canonical correspondence analysis suggested that NO 3 -N, total nitrogen (TN), total carbon (TC), and leaf litter were significantly correlated with the composition of the whole microbial community. This study revealed a positive feedback of eCO 2 in forest soil microbial communities, which may provide new insight for a further understanding of forest ecosystem responses to global CO 2 increases. IMPORTANCE The concentration of atmospheric carbon dioxide (CO 2 ) has continuously been increasing since the industrial revolution. Understanding the response of soil microbial communities to elevated atmospheric CO 2 (eCO 2 ) is important for predicting the contribution of the forest ecosystem to global atmospheric change. This study analyzed the effect of eCO 2 on microbial communities at two soil depths (0 to 5 cm and 5 to 15 cm) in a forest ecosystem. Our findings suggest that the compositional and functional structures of microbial

Long-term Fertilization Structures Bacterial and Archaeal Communities along Soil Depth Gradient in a Paddy Soil

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Yunfu Gu

2017-08-01

Full Text Available Soil microbes provide important ecosystem services. Though the effects of changes in nutrient availability due to fertilization on the soil microbial communities in the topsoil (tilled layer, 0–20 cm have been extensively explored, the effects on communities and their associations with soil nutrients in the subsoil (below 20 cm which is rarely impacted by tillage are still unclear. 16S rRNA gene amplicon sequencing was used to investigate bacterial and archaeal communities in a Pup-Calric-Entisol soil treated for 32 years with chemical fertilizer (CF and CF combined with farmyard manure (CFM, and to reveal links between soil properties and specific bacterial and archaeal taxa in both the top- and subsoil. The results showed that both CF and CFM treatments increased soil organic carbon (SOC, soil moisture (MO and total nitrogen (TN while decreased the nitrate_N content through the profile. Fertilizer applications also increased Olsen phosphorus (OP content in most soil layers. Microbial communities in the topsoil were significantly different from those in subsoil. Compared to the CF treatment, taxa such as Nitrososphaera, Nitrospira, and several members of Acidobacteria in topsoil and Subdivision 3 genera incertae sedis, Leptolinea, and Bellilinea in subsoil were substantially more abundant in CFM. A co-occurrence based network analysis demonstrated that SOC and OP were the most important soil parameters that positively correlated with specific bacterial and archaeal taxa in topsoil and subsoil, respectively. Hydrogenophaga was identified as the keystone genus in the topsoil, while genera Phenylobacterium and Steroidobacter were identified as the keystone taxa in subsoil. The taxa identified above are involved in the decomposition of complex organic compounds and soil carbon, nitrogen, and phosphorus transformations. This study revealed that the spatial variability of soil properties due to long-term fertilization strongly shapes the bacterial

Residues of sugar cane crop and its effects on the epigeic invertebrate faunaResíduos da cultura da cana-de-açúcar e seus efeitos sobre a fauna invertebrada epigéica

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Júlio César Salton

2011-08-01

Full Text Available This study aimed to evaluate the effect of the availability of sugar cane residues on the epigeic invertebrate fauna. The evaluations were made after cane sugar harvest f, considering three levels of residues: 0% (total removal of residues from the soil surface, 50% (removal of half of the waste in the plots, the dry mass of 7.6 Mg ha-1 and 100% (keeping track of residues produced, dry mass of 16.9 Mg ha-1. A fragment of native vegetation in the region, located close to the sugar cane crop, was evaluated for comparison. The experimental plots were arranged in a randomized block design with eight replications. Each plot consisted of five rows 20 m long, were installed two pitfalls to capture the invertebrate fauna, representing sixteen traps in each treatment, totaling forty-eight throughout the experiment. The organisms were extracted manually and identified at major taxonomic groups. The highest diversity and groups richness of epigeic invertebrate fauna were observed in the cane sugar crop with the maintenance of the surface residues (100 and 50%. Moreover, complete removal of residues from the soil surface promoted a significant reduction of the soil invertebrates organisms. Soil samples were collected for evaluation of chemical attributes. The organisms of epigeic invertebrate fauna showed sensitive in detecting changes in systems, depending on the maintenance of plant residues of sugar cane.O presente estudo teve como objetivo avaliar o efeito da disponibilidade de resíduos de cana-de-açúcar sobre a fauna invertebrada epigéica. As avaliações foram realizadas após a colheita da cana-de-açúcar, considerando três níveis de resíduos: 0 % (retirada total de resíduos da superfície do solo, 50 % (retirada da metade dos resíduos nas parcelas, massa seca de 7,6 Mg ha-1 e 100 % (manutenção completa dos resíduos produzidos, massa seca de 16,9 Mg ha-1. As parcelas experimentais foram dispostas num delineamento em blocos casualizados

Effects of Olive Mill Wastewater on Soil Microarthropods and Soil Chemistry in Two Different Cultivation Scenarios in Israel and Palestinian Territories

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Markus Peter Kurtz

2015-09-01

Full Text Available Although olive mill wastewater (OMW is often applied onto soil and is known to be phytotoxic, its impact on soil fauna is still unknown. The objective of this study was to investigate how OMW spreading in olive orchards affects Oribatida and Collembola communities, physicochemical soil properties and their interdependency. For this, we treated plots in two study sites (Gilat, Bait Reema with OMW. Among others, the sites differed in irrigation practice, soil type and climate. We observed that soil acidity and water repellency developed to a lower extent in Gilat than in Bait Reema. This may be explained by irrigation-induced dilution and leaching of OMW compounds in Gilat. In Bait Reema, OMW application suppressed emergence of Oribatida and induced a community shift, but the abundance of Collembola increased in OMW and water-treated plots. In Gilat, Oribatida abundance increased after OMW application. The effects of OMW application on soil biota result from an interaction between stimulation of biological activity and suppression of sensitive species by toxic compounds. Environmental and management conditions are relevant for the degree and persistence of the effects. Moreover, this study underlines the need for detailed research on the ecotoxicological effects of OMW at different application rates.

Effect of progressive inoculation of fauna-free sheep with holotrich protozoa and total-fauna on rumen fermentation, microbial diversity and methane emissions.

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Belanche, Alejandro; de la Fuente, Gabriel; Newbold, Charles J

2015-03-01

Rumen methanogenesis represents an energy waste for the ruminant and an important source of greenhouse gas; thus, integrated studies are needed to fully understand this process. Eight fauna-free sheep were used to investigate the effect of successive inoculation with holotrich protozoa then with total fauna on rumen methanogenesis. Holotrichs inoculation neither altered rumen fermentation rate nor diet digestibility, but increased concentrations of acetate (+15%), butyrate (+57%), anaerobic fungi (+0.82 log), methanogens (+0.41 log) and methanogenesis (+54%). Further inoculation with total fauna increased rumen concentrations of protozoa (+1.0 log), bacteria (+0.29 log), anaerobic fungi (+0.78 log), VFA (+8%), ammonia and fibre digestibility (+17%) without affecting levels of methanogens or methanogenesis. Rumen methanogens population was fairly stable in terms of structure and diversity, while the bacterial community was highly affected by the treatments. Inoculation with holotrich protozoa increased bacterial diversity. Further inoculation with total fauna lowered bacterial diversity but increased concentrations of certain propionate and lactate-producing bacteria, suggesting that alternative H2 sinks could be relevant. This experiment suggests that holotrich protozoa have a greater impact on rumen methanogenesis than entodiniomorphids. Thus, further research is warranted to understand the effect of holotrich protozoa on methane formation and evaluate their elimination from the rumen as a potential methane mitigation strategy. © Federation of European Microbiological Society 2014.

Canopy soil bacterial communities altered by severing host tree limbs

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Cody R. Dangerfield

2017-09-01

Full Text Available Trees of temperate rainforests host a large biomass of epiphytic plants, which are associated with soils formed in the forest canopy. Falling of epiphytic material results in the transfer of carbon and nutrients from the canopy to the forest floor. This study provides the first characterization of bacterial communities in canopy soils enabled by high-depth environmental sequencing of 16S rRNA genes. Canopy soil included many of the same major taxonomic groups of Bacteria that are also found in ground soil, but canopy bacterial communities were lower in diversity and contained different operational taxonomic units. A field experiment was conducted with epiphytic material from six Acer macrophyllum trees in Olympic National Park, Washington, USA to document changes in the bacterial communities of soils associated with epiphytic material that falls to the forest floor. Bacterial diversity and composition of canopy soil was highly similar, but not identical, to adjacent ground soil two years after transfer to the forest floor, indicating that canopy bacteria are almost, but not completely, replaced by ground soil bacteria. Furthermore, soil associated with epiphytic material on branches that were severed from the host tree and suspended in the canopy contained altered bacterial communities that were distinct from those in canopy material moved to the forest floor. Therefore, the unique nature of canopy soil bacteria is determined in part by the host tree and not only by the physical environmental conditions associated with the canopy. Connection to the living tree appears to be a key feature of the canopy habitat. These results represent an initial survey of bacterial diversity of the canopy and provide a foundation upon which future studies can more fully investigate the ecological and evolutionary dynamics of these communities.

the use of integrated soil fertility approach in the improvement of soil

African Journals Online (AJOL)

Sammy

Innovational practices in the management of organic matters in semi-arid soil, ... Compared to other areas, a large proportion of soil in semi-arid areas has low .... combine old and new methods of nutrient management into ecologically sound and ... Furthermore, organic matter is the energy source for soil fauna and micro ...

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes.

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Fierer, Noah; Leff, Jonathan W; Adams, Byron J; Nielsen, Uffe N; Bates, Scott Thomas; Lauber, Christian L; Owens, Sarah; Gilbert, Jack A; Wall, Diana H; Caporaso, J Gregory

2012-12-26

For centuries ecologists have studied how the diversity and functional traits of plant and animal communities vary across biomes. In contrast, we have only just begun exploring similar questions for soil microbial communities despite soil microbes being the dominant engines of biogeochemical cycles and a major pool of living biomass in terrestrial ecosystems. We used metagenomic sequencing to compare the composition and functional attributes of 16 soil microbial communities collected from cold deserts, hot deserts, forests, grasslands, and tundra. Those communities found in plant-free cold desert soils typically had the lowest levels of functional diversity (diversity of protein-coding gene categories) and the lowest levels of phylogenetic and taxonomic diversity. Across all soils, functional beta diversity was strongly correlated with taxonomic and phylogenetic beta diversity; the desert microbial communities were clearly distinct from the nondesert communities regardless of the metric used. The desert communities had higher relative abundances of genes associated with osmoregulation and dormancy, but lower relative abundances of genes associated with nutrient cycling and the catabolism of plant-derived organic compounds. Antibiotic resistance genes were consistently threefold less abundant in the desert soils than in the nondesert soils, suggesting that abiotic conditions, not competitive interactions, are more important in shaping the desert microbial communities. As the most comprehensive survey of soil taxonomic, phylogenetic, and functional diversity to date, this study demonstrates that metagenomic approaches can be used to build a predictive understanding of how microbial diversity and function vary across terrestrial biomes.

Urban community gardeners' knowledge and perceptions of soil contaminant risks.

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Kim, Brent F; Poulsen, Melissa N; Margulies, Jared D; Dix, Katie L; Palmer, Anne M; Nachman, Keeve E

2014-01-01

Although urban community gardening can offer health, social, environmental, and economic benefits, these benefits must be weighed against the potential health risks stemming from exposure to contaminants such as heavy metals and organic chemicals that may be present in urban soils. Individuals who garden at or eat food grown in contaminated urban garden sites may be at risk of exposure to such contaminants. Gardeners may be unaware of these risks and how to manage them. We used a mixed quantitative/qualitative research approach to characterize urban community gardeners' knowledge and perceptions of risks related to soil contaminant exposure. We conducted surveys with 70 gardeners from 15 community gardens in Baltimore, Maryland, and semi-structured interviews with 18 key informants knowledgeable about community gardening and soil contamination in Baltimore. We identified a range of factors, challenges, and needs related to Baltimore community gardeners' perceptions of risk related to soil contamination, including low levels of concern and inconsistent levels of knowledge about heavy metal and organic chemical contaminants, barriers to investigating a garden site's history and conducting soil tests, limited knowledge of best practices for reducing exposure, and a need for clear and concise information on how best to prevent and manage soil contamination. Key informants discussed various strategies for developing and disseminating educational materials to gardeners. For some challenges, such as barriers to conducting site history and soil tests, some informants recommended city-wide interventions that bypass the need for gardener knowledge altogether.

Urban community gardeners' knowledge and perceptions of soil contaminant risks.

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Brent F Kim

Full Text Available Although urban community gardening can offer health, social, environmental, and economic benefits, these benefits must be weighed against the potential health risks stemming from exposure to contaminants such as heavy metals and organic chemicals that may be present in urban soils. Individuals who garden at or eat food grown in contaminated urban garden sites may be at risk of exposure to such contaminants. Gardeners may be unaware of these risks and how to manage them. We used a mixed quantitative/qualitative research approach to characterize urban community gardeners' knowledge and perceptions of risks related to soil contaminant exposure. We conducted surveys with 70 gardeners from 15 community gardens in Baltimore, Maryland, and semi-structured interviews with 18 key informants knowledgeable about community gardening and soil contamination in Baltimore. We identified a range of factors, challenges, and needs related to Baltimore community gardeners' perceptions of risk related to soil contamination, including low levels of concern and inconsistent levels of knowledge about heavy metal and organic chemical contaminants, barriers to investigating a garden site's history and conducting soil tests, limited knowledge of best practices for reducing exposure, and a need for clear and concise information on how best to prevent and manage soil contamination. Key informants discussed various strategies for developing and disseminating educational materials to gardeners. For some challenges, such as barriers to conducting site history and soil tests, some informants recommended city-wide interventions that bypass the need for gardener knowledge altogether.

Extreme CO2 disturbance and the resilience of soil microbial communities

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McFarland, Jack W.; Waldrop, Mark P.; Haw, Monica

2013-01-01

Carbon capture and storage (CSS) technology has the potential to inadvertently release large quantities of CO2 through geologic substrates and into surrounding soils and ecosystems. Such a disturbance has the potential to not only alter the structure and function of plant and animal communities, but also soils, soil microbial communities, and the biogeochemical processes they mediate. At Mammoth Mountain, we assessed the soil microbial community response to CO2 disturbance (derived from volcanic ‘cold’ CO2) that resulted in localized tree kill; soil CO2 concentrations in our study area ranged from 0.6% to 60%. Our objectives were to examine how microbial communities and their activities are restructured by extreme CO2 disturbance, and assess the response of major microbial taxa to the reintroduction of limited plant communities following an extensive period (15–20 years) with no plants. We found that CO2-induced tree kill reduced soil carbon (C) availability along our sampling transect. In response, soil microbial biomass decreased by an order of magnitude from healthy forest to impacted areas. Soil microorganisms were most sensitive to changes in soil organic C, which explained almost 60% of the variation for microbial biomass C (MBC) along the CO2gradient. We employed phospholipid fatty acid analysis and quantitative PCR (qPCR) to determine compositional changes among microbial communities in affected areas and found substantial reductions in microbial biomass linked to the loss of soil fungi. In contrast, archaeal populations responded positively to the CO2 disturbance, presumably due to reduced competition of bacteria and fungi, and perhaps unique adaptations to energy stress. Enzyme activities important in the cycling of soil C, nitrogen (N), and phosphorus (P) declined with increasing CO2, though specific activities (per unit MBC) remained stable or increased suggesting functional redundancy among restructured communities. We conclude that both the

Impact of electrokinetic remediation on microbial communities within PCP contaminated soil

International Nuclear Information System (INIS)

Lear, G.; Harbottle, M.J.; Sills, G.; Knowles, C.J.; Semple, K.T.; Thompson, I.P.

2007-01-01

Electrokinetic techniques have been used to stimulate the removal of organic pollutants within soil, by directing contaminant migration to where remediation may be more easily achieved. The effect of this and other physical remediation techniques on the health of soil microbial communities has been poorly studied and indeed, largely ignored. This study reports the impact on soil microbial communities during the application of an electric field within ex situ laboratory soil microcosms contaminated with pentachlorophenol (PCP; 100 mg kg -1 oven dry soil). Electrokinetics reduced counts of culturable bacteria and fungi, soil microbial respiration and carbon substrate utilisation, especially close to the acidic anode where PCP accumulated (36 d), perhaps exacerbated by the greater toxicity of PCP at lower soil pH. There is little doubt that a better awareness of the interactions between soil electrokinetic processes and microbial communities is key to improving the efficacy and sustainability of this remediation strategy. - Electrokinetics negatively impacted soil

Long-term application of bioorganic fertilizers improved soil biochemical properties and microbial communities of an apple orchard soil

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Wang Lei

2016-11-01

Full Text Available Soil biochemical properties and microbial communities are usually considered as important indicators of soil health because of their association with plant nutrition. In this study, we investigated the impact of long-term application of bioorganic fertilizer (BOF on soil biochemical properties and microbial communities in the apple orchard soil of the Loess Plateau. The experiment included three treatments: (1 control without fertilization (CK; (2 chemical fertilizer application (CF; and (3 bioorganic fertilizer application (BOF. The high throughput sequencing was used to examine the bacterial and fungal communities in apple orchard soil. The results showed that the BOF treatment significantly increased the apple yield during the experimental time (2009-2015. The application of BOF significantly increased the activities of catalase and invertase compared to those in CK and CF treatments. The high throughput sequencing data showed that the application of BOF changed the microbial community composition of all soil depths considered (0-20cm, 20-40cm, and 40-60cm, e.g., the relative abundance of bio-control bacteria (Xanthomonadales, Lysobacter, Pseudomonas and Bacillus, Proteobacteria, Bacteroidetes, Ohtaekwangia, Ilyonectria and Lecanicillium was increased while that of Acidobacteria, Chloroflexi, Gp4, Gp6 and Sphaerobacter was decreased. The increase in apple yield after the application of BOF might be due to increase in organic matter, total nitrogen and catalase and invertase activities of soil and change in the bacterial community composition by enriching Bacillus, Pseudomonas, Lysobacter and Ohtaekwangia. These results further enhance the understanding on how BOFs alter soil microbial community composition to stimulate soil productivity.

Effects of microcystins contamination on soil enzyme activities and microbial community in two typical lakeside soils.

Science.gov (United States)

Cao, Qing; Steinman, Alan D; Su, Xiaomei; Xie, Liqiang

2017-12-01

A 30-day indoor incubation experiment was conducted to investigate the effects of different concentrations of microcystin (1, 10, 100 and 1000 μg eq. MC-LR L -1 ) on soil enzyme activity, soil respiration, physiological profiles, potential nitrification, and microbial abundance (total bacteria, total fungi, ammonia-oxidizing bacteria and archaea) in two lakeside soils in China (Soil A from the lakeside of Lake Poyanghu at Jiujiang; Soil B from the lakeside of Lake Taihu at Suzhou). Of the enzymes tested, only phenol oxidase activity was negatively affected by microcystin application. In contrast, dehydrogenase activity was stimulated in the 1000 μg treatment, and a stimulatory effect also occurred with soil respiration in contaminated soil. The metabolic profiles of the microbial communities indicated that overall carbon metabolic activity in the soils treated with high microcystin concentrations was inhibited, and high concentrations of microcystin also led to different patterns of potential carbon utilization. High microcystin concentrations (100, 1000 μg eq. MC-LR L -1 in Soil A; 10, 100 1000 μg eq. MC-LR L -1 in Soil B) significantly decreased soil potential nitrification rate. Furthermore, the decrease in soil potential nitrification rate was positively correlated with the decrease of the amoA gene abundance, which corresponds to the ammonia-oxidizing bacterial community. We conclude that application of microcystin-enriched irrigation water can significantly impact soil microbial community structure and function. Copyright © 2017 Elsevier Ltd. All rights reserved.

Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers

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Ren Bai

2017-05-01

Full Text Available Paddy rice fields occupy broad agricultural area in China and cover diverse soil types. Microbial community in paddy soils is of great interest since many microorganisms are involved in soil functional processes. In the present study, Illumina Mi-Seq sequencing and functional gene array (GeoChip 4.2 techniques were combined to investigate soil microbial communities and functional gene patterns across the three soil types including an Inceptisol (Binhai, an Oxisol (Leizhou, and an Ultisol (Taoyuan along four profile depths (up to 70 cm in depth in mesocosm incubation columns. Detrended correspondence analysis revealed that distinctly differentiation in microbial community existed among soil types and profile depths, while the manifest variance in functional structure was only observed among soil types and two rice growth stages, but not across profile depths. Along the profile depth within each soil type, Acidobacteria, Chloroflexi, and Firmicutes increased whereas Cyanobacteria, β-proteobacteria, and Verrucomicrobia declined, suggesting their specific ecophysiological properties. Compared to bacterial community, the archaeal community showed a more contrasting pattern with the predominant groups within phyla Euryarchaeota, Thaumarchaeota, and Crenarchaeota largely varying among soil types and depths. Phylogenetic molecular ecological network (pMEN analysis further indicated that the pattern of bacterial and archaeal communities interactions changed with soil depth and the highest modularity of microbial community occurred in top soils, implying a relatively higher system resistance to environmental change compared to communities in deeper soil layers. Meanwhile, microbial communities had higher connectivity in deeper soils in comparison with upper soils, suggesting less microbial interaction in surface soils. Structure equation models were developed and the models indicated that pH was the most representative characteristics of soil type and

Microbial Community and Functional Structure Significantly Varied among Distinct Types of Paddy Soils But Responded Differently along Gradients of Soil Depth Layers.

Science.gov (United States)

Bai, Ren; Wang, Jun-Tao; Deng, Ye; He, Ji-Zheng; Feng, Kai; Zhang, Li-Mei

2017-01-01

Paddy rice fields occupy broad agricultural area in China and cover diverse soil types. Microbial community in paddy soils is of great interest since many microorganisms are involved in soil functional processes. In the present study, Illumina Mi-Seq sequencing and functional gene array (GeoChip 4.2) techniques were combined to investigate soil microbial communities and functional gene patterns across the three soil types including an Inceptisol (Binhai), an Oxisol (Leizhou), and an Ultisol (Taoyuan) along four profile depths (up to 70 cm in depth) in mesocosm incubation columns. Detrended correspondence analysis revealed that distinctly differentiation in microbial community existed among soil types and profile depths, while the manifest variance in functional structure was only observed among soil types and two rice growth stages, but not across profile depths. Along the profile depth within each soil type, Acidobacteria , Chloroflexi , and Firmicutes increased whereas Cyanobacteria , β -proteobacteria , and Verrucomicrobia declined, suggesting their specific ecophysiological properties. Compared to bacterial community, the archaeal community showed a more contrasting pattern with the predominant groups within phyla Euryarchaeota , Thaumarchaeota , and Crenarchaeota largely varying among soil types and depths. Phylogenetic molecular ecological network (pMEN) analysis further indicated that the pattern of bacterial and archaeal communities interactions changed with soil depth and the highest modularity of microbial community occurred in top soils, implying a relatively higher system resistance to environmental change compared to communities in deeper soil layers. Meanwhile, microbial communities had higher connectivity in deeper soils in comparison with upper soils, suggesting less microbial interaction in surface soils. Structure equation models were developed and the models indicated that pH was the most representative characteristics of soil type and

Belowground biotic complexity drives aboveground dynamics: a test of the soil community feedback model.

Science.gov (United States)

Pendergast, Thomas H; Burke, David J; Carson, Walter P

2013-03-01

Feedbacks between soil communities and plants may determine abundance and diversity in plant communities by influencing fitness and competitive outcomes. We tested the core hypotheses of soil community feedback theory: plant species culture distinct soil communities that alter plant performance and the outcome of interspecific competition. We applied this framework to inform the repeated dominance of Solidago canadensis in old-field communities. In glasshouse experiments, we examined the effects of soil communities on four plant species' performance in monoculture and outcomes of interspecific competition. We used terminal restriction fragment length polymorphism (TRFLP) analysis to infer differences in the soil communities associated with these plant species. Soil community origin had strong effects on plant performance, changed the intensity of interspecific competition and even reversed whether plant species were limited by conspecifics or heterospecifics. These plant-soil feedbacks are strong enough to upend winners and losers in classic competition models. Plant species cultured significantly different mycorrhizal fungal and bacterial soil communities, indicating that these feedbacks are likely microbiotic in nature. In old-fields and other plant communities, these soil feedbacks appear common, fundamentally alter the intensity and nature of plant competition and potentially maintain diversity while facilitating the dominance of So. canadensis. © 2013 The Authors. New Phytologist © 2013 New Phytologist Trust.

Microbial Community Dynamics in Soil Depth Profiles Over 120,000 Years of Ecosystem Development

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Stephanie Turner

2017-05-01

Full Text Available Along a long-term ecosystem development gradient, soil nutrient contents and mineralogical properties change, therefore probably altering soil microbial communities. However, knowledge about the dynamics of soil microbial communities during long-term ecosystem development including progressive and retrogressive stages is limited, especially in mineral soils. Therefore, microbial abundances (quantitative PCR and community composition (pyrosequencing as well as their controlling soil properties were investigated in soil depth profiles along the 120,000 years old Franz Josef chronosequence (New Zealand. Additionally, in a microcosm incubation experiment the effects of particular soil properties, i.e., soil age, soil organic matter fraction (mineral-associated vs. particulate, O2 status, and carbon and phosphorus additions, on microbial abundances (quantitative PCR and community patterns (T-RFLP were analyzed. The archaeal to bacterial abundance ratio not only increased with soil depth but also with soil age along the chronosequence, coinciding with mineralogical changes and increasing phosphorus limitation. Results of the incubation experiment indicated that archaeal abundances were less impacted by the tested soil parameters compared to Bacteria suggesting that Archaea may better cope with mineral-induced substrate restrictions in subsoils and older soils. Instead, archaeal communities showed a soil age-related compositional shift with the Bathyarchaeota, that were frequently detected in nutrient-poor, low-energy environments, being dominant at the oldest site. However, bacterial communities remained stable with ongoing soil development. In contrast to the abundances, the archaeal compositional shift was associated with the mineralogical gradient. Our study revealed, that archaeal and bacterial communities in whole soil profiles are differently affected by long-term soil development with archaeal communities probably being better adapted to

Soil Conditions Rather Than Long-Term Exposure to Elevated CO2 Affect Soil Microbial Communities Associated with N-Cycling

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Kristof Brenzinger

2017-10-01

Full Text Available Continuously rising atmospheric CO2 concentrations may lead to an increased transfer of organic C from plants to the soil through rhizodeposition and may affect the interaction between the C- and N-cycle. For instance, fumigation of soils with elevated CO2 (eCO2 concentrations (20% higher compared to current atmospheric concentrations at the Giessen Free-Air Carbon Dioxide Enrichment (GiFACE sites resulted in a more than 2-fold increase of long-term N2O emissions and an increase in dissimilatory reduction of nitrate compared to ambient CO2 (aCO2. We hypothesized that the observed differences in soil functioning were based on differences in the abundance and composition of microbial communities in general and especially of those which are responsible for N-transformations in soil. We also expected eCO2 effects on soil parameters, such as on nitrate as previously reported. To explore the impact of long-term eCO2 on soil microbial communities, we applied a molecular approach (qPCR, T-RFLP, and 454 pyrosequencing. Microbial groups were analyzed in soil of three sets of two FACE plots (three replicate samples from each plot, which were fumigated with eCO2 and aCO2, respectively. N-fixers, denitrifiers, archaeal and bacterial ammonia oxidizers, and dissimilatory nitrate reducers producing ammonia were targeted by analysis of functional marker genes, and the overall archaeal community by 16S rRNA genes. Remarkably, soil parameters as well as the abundance and composition of microbial communities in the top soil under eCO2 differed only slightly from soil under aCO2. Wherever differences in microbial community abundance and composition were detected, they were not linked to CO2 level but rather determined by differences in soil parameters (e.g., soil moisture content due to the localization of the GiFACE sets in the experimental field. We concluded that +20% eCO2 had little to no effect on the overall microbial community involved in N-cycling in the

Soil Conditions Rather Than Long-Term Exposure to Elevated CO2 Affect Soil Microbial Communities Associated with N-Cycling.

Science.gov (United States)

Brenzinger, Kristof; Kujala, Katharina; Horn, Marcus A; Moser, Gerald; Guillet, Cécile; Kammann, Claudia; Müller, Christoph; Braker, Gesche

2017-01-01

Continuously rising atmospheric CO 2 concentrations may lead to an increased transfer of organic C from plants to the soil through rhizodeposition and may affect the interaction between the C- and N-cycle. For instance, fumigation of soils with elevated CO 2 ( e CO 2 ) concentrations (20% higher compared to current atmospheric concentrations) at the Giessen Free-Air Carbon Dioxide Enrichment (GiFACE) sites resulted in a more than 2-fold increase of long-term N 2 O emissions and an increase in dissimilatory reduction of nitrate compared to ambient CO 2 ( a CO 2 ). We hypothesized that the observed differences in soil functioning were based on differences in the abundance and composition of microbial communities in general and especially of those which are responsible for N-transformations in soil. We also expected e CO 2 effects on soil parameters, such as on nitrate as previously reported. To explore the impact of long-term e CO 2 on soil microbial communities, we applied a molecular approach (qPCR, T-RFLP, and 454 pyrosequencing). Microbial groups were analyzed in soil of three sets of two FACE plots (three replicate samples from each plot), which were fumigated with e CO 2 and a CO 2 , respectively. N-fixers, denitrifiers, archaeal and bacterial ammonia oxidizers, and dissimilatory nitrate reducers producing ammonia were targeted by analysis of functional marker genes, and the overall archaeal community by 16S rRNA genes. Remarkably, soil parameters as well as the abundance and composition of microbial communities in the top soil under e CO 2 differed only slightly from soil under a CO 2 . Wherever differences in microbial community abundance and composition were detected, they were not linked to CO 2 level but rather determined by differences in soil parameters (e.g., soil moisture content) due to the localization of the GiFACE sets in the experimental field. We concluded that +20% e CO 2 had little to no effect on the overall microbial community involved in N

Distinct soil bacterial communities revealed under a diversely managed agroecosystem.

Directory of Open Access Journals (Sweden)

Raymon S Shange

Full Text Available Land-use change and management practices are normally enacted to manipulate environments to improve conditions that relate to production, remediation, and accommodation. However, their effect on the soil microbial community and their subsequent influence on soil function is still difficult to quantify. Recent applications of molecular techniques to soil biology, especially the use of 16S rRNA, are helping to bridge this gap. In this study, the influence of three land-use systems within a demonstration farm were evaluated with a view to further understand how these practices may impact observed soil bacterial communities. Replicate soil samples collected from the three land-use systems (grazed pine forest, cultivated crop, and grazed pasture on a single soil type. High throughput 16S rRNA gene pyrosequencing was used to generate sequence datasets. The different land use systems showed distinction in the structure of their bacterial communities with respect to the differences detected in cluster analysis as well as diversity indices. Specific taxa, particularly Actinobacteria, Acidobacteria, and classes of Proteobacteria, showed significant shifts across the land-use strata. Families belonging to these taxa broke with notions of copio- and oligotrphy at the class level, as many of the less abundant groups of families of Actinobacteria showed a propensity for soil environments with reduced carbon/nutrient availability. Orders Actinomycetales and Solirubrobacterales showed their highest abundance in the heavily disturbed cultivated system despite the lowest soil organic carbon (SOC values across the site. Selected soil properties ([SOC], total nitrogen [TN], soil texture, phosphodiesterase [PD], alkaline phosphatase [APA], acid phosphatase [ACP] activity, and pH also differed significantly across land-use regimes, with SOM, PD, and pH showing variation consistent with shifts in community structure and composition. These results suggest that use of

Temperature sensitivity of soil respiration rates enhanced by microbial community response.

Science.gov (United States)

Karhu, Kristiina; Auffret, Marc D; Dungait, Jennifer A J; Hopkins, David W; Prosser, James I; Singh, Brajesh K; Subke, Jens-Arne; Wookey, Philip A; Agren, Göran I; Sebastià, Maria-Teresa; Gouriveau, Fabrice; Bergkvist, Göran; Meir, Patrick; Nottingham, Andrew T; Salinas, Norma; Hartley, Iain P

2014-09-04

Soils store about four times as much carbon as plant biomass, and soil microbial respiration releases about 60 petagrams of carbon per year to the atmosphere as carbon dioxide. Short-term experiments have shown that soil microbial respiration increases exponentially with temperature. This information has been incorporated into soil carbon and Earth-system models, which suggest that warming-induced increases in carbon dioxide release from soils represent an important positive feedback loop that could influence twenty-first-century climate change. The magnitude of this feedback remains uncertain, however, not least because the response of soil microbial communities to changing temperatures has the potential to either decrease or increase warming-induced carbon losses substantially. Here we collect soils from different ecosystems along a climate gradient from the Arctic to the Amazon and investigate how microbial community-level responses control the temperature sensitivity of soil respiration. We find that the microbial community-level response more often enhances than reduces the mid- to long-term (90 days) temperature sensitivity of respiration. Furthermore, the strongest enhancing responses were observed in soils with high carbon-to-nitrogen ratios and in soils from cold climatic regions. After 90 days, microbial community responses increased the temperature sensitivity of respiration in high-latitude soils by a factor of 1.4 compared to the instantaneous temperature response. This suggests that the substantial carbon stores in Arctic and boreal soils could be more vulnerable to climate warming than currently predicted.

Soil communities promote temporal stability and species asynchrony in experimental grassland communities

NARCIS (Netherlands)

Pellkofer, Sarah; Van Der Heijden, Marcel G A; Schmid, Bernhard; Wagg, Cameron

2016-01-01

Background Over the past two decades many studies have demonstrated that plant species diversity promotes primary productivity and stability in grassland ecosystems. Additionally, soil community characteristics have also been shown to influence the productivity and composition of plant communities,

Fungal Communities in Rhizosphere Soil under Conservation Tillage Shift in Response to Plant Growth

Directory of Open Access Journals (Sweden)

Ziting Wang

2017-07-01

Full Text Available Conservation tillage is an extensively used agricultural practice in northern China that alters soil texture and nutrient conditions, causing changes in the soil microbial community. However, how conservation tillage affects rhizosphere and bulk soil fungal communities during plant growth remains unclear. The present study investigated the effect of long-term (6 years conservation (chisel plow, zero and conventional (plow tillage during wheat growth on the rhizosphere fungal community, using high-throughput sequencing of the internal transcribed spacer (ITS gene and quantitative PCR. During tillering, fungal alpha diversity in both rhizosphere and bulk soil were significantly higher under zero tillage compared to other methods. Although tillage had no significant effect during the flowering stage, fungal alpha diversity at this stage was significantly different between rhizosphere and bulk soils, with bulk soil presenting the highest diversity. This was also reflected in the phylogenetic structure of the communities, as rhizosphere soil communities underwent a greater shift from tillering to flowering compared to bulk soil communities. In general, less variation in community structure was observed under zero tillage compared to plow and chisel plow treatments. Changes in the relative abundance of the fungal orders Capnodiales, Pleosporales, and Xylariales contributed the highest to the dissimilarities observed. Structural equation models revealed that the soil fungal communities under the three tillage regimes were likely influenced by the changes in soil properties associated with plant growth. This study suggested that: (1 differences in nutrient resources between rhizosphere and bulk soils can select for different types of fungi thereby increasing community variation during plant growth; (2 tillage can alter fungal communities' variability, with zero tillage promoting more stable communities. This work suggests that long-term changes in

Soil conservation according the international community

International Nuclear Information System (INIS)

Nocera, Rachele

2015-01-01

The land is a finite resource. Desertification, climate change, pollution, human settlements and human activities, threaten the integrity of the soil and its ability to 'nourishing the planet'. In a growing awareness, the international community is by multiplying the action to promote overall defence and soil conservation measures, starting with the fight against desertification, with the aim of arriving at a Land Degradation Neutrality to 2050. [it

Effect of Soil Tillage Practices on Dynamic of Bacterial Communities in Soil

OpenAIRE

Mirna Mrkonjić Fuka; Mihaela Blažinkov; Viviane Radl; Danijel Jug; Nataša Hulak; Sulejman Redžepović; Michael Schloter

2016-01-01

Several studies have indicated that intensive tillage has notable effect on properties of the soil microbiota that may influence numerous important soils functions, e.g. mobilization of nutrients or change of the overall emission rates of greenhouse gases. Therefore, the aim of our study was to investigate dynamic of microbial communities in soil planted with soybean under different tillage systems. Moreover, abundance of populations harboring the nitrous- oxide reductase gene (nosZ) a...

Fluctuations in ammonia oxidizing communities across agricultural soils are driven by soil structure and pH

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Michele C ePereira e Silva

2012-03-01

Full Text Available The milieu in soil in which microorganisms dwell is never constant. Conditions such as temperature, water availability, pH and nutrients frequently change, impacting the overall functioning of the soil system. To understand the effects of such factors on soil functioning, proxies (indicators of soil function are needed that, in a sensitive manner, reveal normal amplitude of variation. Thus, the so-called normal operating range (NOR of soil can be defined. In this study we determined different components of nitrification by analyzing, in eight agricultural soils, how the community structures and sizes of ammonia oxidizing bacteria and archaea (AOB and AOA, respectively, and their activity, fluctuate over spatial and temporal scales. The results indicated that soil pH and soil type are the main factors that influence the size and structure of the AOA and AOB, as well as their function. The nitrification rates varied between 0.11 ± 0.03 µgN.h-1.gdw-1 and 1.68 ± 0.11 µgN.h-1.gdw-1, being higher in soils with higher clay content (1.09 ± 0.12 µgN.h-1.gdw-1 and lower in soils with lower clay percentages (0.27 ± 0.04 µgN.h-1.gdw-1. Nitrifying activity was driven by soil pH, mostly related to its effect on AOA but not on AOB abundance. Regarding the influence of soil parameters, clay content was the main soil factor shaping the structure of both the AOA and AOB communities. Overall, the potential nitrifying activities were higher and more variable over time in the clayey than in the sandy soils. Whereas the structure of AOB fluctuated more (62.7 ± 2.10% the structure of AOA communities showed lower amplitude of variation (53.65 ± 3.37%. Similar trends were observed for the sizes of these communities. The present work represents a first step towards defining a NOR for soil nitrification. Moreover, the clear effect of soil texture established here suggests that the NOR should be defined in a soil-type-specific manner.

Plant-plant competition outcomes are modulated by plant effects on the soil bacterial community.

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Hortal, S; Lozano, Y M; Bastida, F; Armas, C; Moreno, J L; Garcia, C; Pugnaire, F I

2017-12-19

Competition is a key process that determines plant community structure and dynamics, often mediated by nutrients and water availability. However, the role of soil microorganisms on plant competition, and the links between above- and belowground processes, are not well understood. Here we show that the effects of interspecific plant competition on plant performance are mediated by feedbacks between plants and soil bacterial communities. Each plant species selects a singular community of soil microorganisms in its rhizosphere with a specific species composition, abundance and activity. When two plant species interact, the resulting soil bacterial community matches that of the most competitive plant species, suggesting strong competitive interactions between soil bacterial communities as well. We propose a novel mechanism by which changes in belowground bacterial communities promoted by the most competitive plant species influence plant performance and competition outcome. These findings emphasise the strong links between plant and soil communities, paving the way to a better understanding of plant community dynamics and the effects of soil bacterial communities on ecosystem functioning and services.

[Soil catalase activity of main plant communities in Leymus chinensis grassland in northeast China].

Science.gov (United States)

Lu, Ping; Guo, Jixun; Zhu, Li

2002-06-01

The seasonal dynamics of soil catalase activity of three different plants communities in Leymus chinensis grassland in northeast China were in a parabolas shape. The seasonal variation of Chloris virgata community was greater than those of Leymus chinensis community and Puccinellia tenuiflora community, and "seed effect" might be the main reason. The correlation between the activity of soil catalase in different soil layers and environmental factors were analyzed. The results showed that the activity of soil catalase was decreased gradually with depth of soil layer. The activity of soil catalase was closely correlated with rainfall and air temperature, and it was affected by soil temperature, soil moisture, and their interactions. The correlation between the activity and aboveground vegetation was very significant, and the growing condition of plant communities could be reflected by the activity of soil catalase.

Effects of inorganic and organic amendment on soil chemical properties, enzyme activities, microbial community and soil quality in yellow clayey soil.

Directory of Open Access Journals (Sweden)

Zhanjun Liu

Full Text Available Understanding the effects of external organic and inorganic components on soil fertility and quality is essential for improving low-yielding soils. We conducted a field study over two consecutive rice growing seasons to investigate the effect of applying chemical fertilizer (NPK, NPK plus green manure (NPKG, NPK plus pig manure (NPKM, and NPK plus straw (NPKS on the soil nutrient status, enzyme activities involved in C, N, P, and S cycling, microbial community and rice yields of yellow clayey soil. Results showed that the fertilized treatments significantly improved rice yields over the first three experimental seasons. Compared with the NPK treatment, organic amendments produced more favorable effects on soil productivity. Notably, the NPKM treatment exhibited the highest levels of nutrient availability, microbial biomass carbon (MBC, activities of most enzymes and the microbial community. This resulted in the highest soil quality index (SQI and rice yield, indicating better soil fertility and quality. Significant differences in enzyme activities and the microbial community were observed among the treatments, and redundancy analysis showed that MBC and available N were the key determinants affecting the soil enzyme activities and microbial community. The SQI score of the non-fertilized control (0.72 was comparable to that of the NPK (0.77, NPKG (0.81 and NPKS (0.79 treatments but significantly lower compared with NPKM (0.85. The significant correlation between rice yield and SQI suggests that SQI can be a useful to quantify soil quality changes caused by different agricultural management practices. The results indicate that application of NPK plus pig manure is the preferred option to enhance SOC accumulation, improve soil fertility and quality, and increase rice yield in yellow clayey soil.

Diversity and metabolic potential of the microbiota associated with a soil arthropod.

Science.gov (United States)

Bahrndorff, Simon; de Jonge, Nadieh; Hansen, Jacob Kjerulf; Lauritzen, Jannik Mørk Skovgaard; Spanggaard, Lasse Holt; Sørensen, Mathias Hamann; Yde, Morten; Nielsen, Jeppe Lund

2018-02-06

Springtails are important members of the soil fauna and play a key role in plant litter decomposition, for example through stimulation of the microbial activity. However, their interaction with soil microorganisms remains poorly understood and it is unclear which microorganisms are associated to the springtail (endo) microbiota. Therefore, we assessed the structure of the microbiota of the springtail Orchesella cincta (L.) using 16S rRNA gene amplicon sequencing. Individuals were sampled across sites in the field and the microbiota and in particular the endomicrobiota were investigated. The microbiota was dominated by the families of Rickettsiaceae, Enterobacteriaceae and Comamonadaceae and at the genus level the most abundant genera included Rickettsia, Chryseobacterium, Pseudomonas, and Stenotrophomonas. Microbial communities were distinct for the interior of the springtails for measures of community diversity and exhibited structure according to collection sites. Functional analysis of the springtail bacterial community suggests that abundant members of the microbiota may be associated with metabolism including decomposition processes. Together these results add to the understanding of the microbiota of springtails and interaction with soil microorganisms including their putative functional roles.

Soil Parameters Drive the Structure, Diversity and Metabolic Potentials of the Bacterial Communities Across Temperate Beech Forest Soil Sequences.

Science.gov (United States)

Jeanbille, M; Buée, M; Bach, C; Cébron, A; Frey-Klett, P; Turpault, M P; Uroz, S

2016-02-01

Soil and climatic conditions as well as land cover and land management have been shown to strongly impact the structure and diversity of the soil bacterial communities. Here, we addressed under a same land cover the potential effect of the edaphic parameters on the soil bacterial communities, excluding potential confounding factors as climate. To do this, we characterized two natural soil sequences occurring in the Montiers experimental site. Spatially distant soil samples were collected below Fagus sylvatica tree stands to assess the effect of soil sequences on the edaphic parameters, as well as the structure and diversity of the bacterial communities. Soil analyses revealed that the two soil sequences were characterized by higher pH and calcium and magnesium contents in the lower plots. Metabolic assays based on Biolog Ecoplates highlighted higher intensity and richness in usable carbon substrates in the lower plots than in the middle and upper plots, although no significant differences occurred in the abundance of bacterial and fungal communities along the soil sequences as assessed using quantitative PCR. Pyrosequencing analysis of 16S ribosomal RNA (rRNA) gene amplicons revealed that Proteobacteria, Acidobacteria and Bacteroidetes were the most abundantly represented phyla. Acidobacteria, Proteobacteria and Chlamydiae were significantly enriched in the most acidic and nutrient-poor soils compared to the Bacteroidetes, which were significantly enriched in the soils presenting the higher pH and nutrient contents. Interestingly, aluminium, nitrogen, calcium, nutrient availability and pH appeared to be the best predictors of the bacterial community structures along the soil sequences.

Soil and geography are more important determinants of indigenous arbuscular mycorrhizal communities than management practices in Swiss agricultural soils.

Science.gov (United States)

Jansa, Jan; Erb, Angela; Oberholzer, Hans-Rudolf; Smilauer, Petr; Egli, Simon

2014-04-01

Arbuscular mycorrhizal fungi (AMF) are ubiquitous soil fungi, forming mutualistic symbiosis with a majority of terrestrial plant species. They are abundant in nearly all soils, less diverse than soil prokaryotes and other intensively studied soil organisms and thus are promising candidates for universal indicators of land management legacies and soil quality degradation. However, insufficient data on how the composition of indigenous AMF varies along soil and landscape gradients have hampered the definition of baselines and effect thresholds to date. Here, indigenous AMF communities in 154 agricultural soils collected across Switzerland were profiled by quantitative real-time PCR with taxon-specific markers for six widespread AMF species. To identify the key determinants of AMF community composition, the profiles were related to soil properties, land management and site geography. Our results indicate a number of well-supported dependencies between abundances of certain AMF taxa and soil properties such as pH, soil fertility and texture, and a surprising lack of effect of available soil phosphorus on the AMF community profiles. Site geography, especially the altitude and large geographical distance, strongly affected AMF communities. Unexpected was the apparent lack of a strong land management effect on the AMF communities as compared to the other predictors, which could be due to the rarity of highly intensive and unsustainable land management in Swiss agriculture. In spite of the extensive coverage of large geographical and soil gradients, we did not identify any taxon suitable as an indicator of land use among the six taxa we studied. © 2014 John Wiley & Sons Ltd.

Agroforestry management in vineyards: effects on soil microbial communities

Science.gov (United States)

Montagne, Virginie; Nowak, Virginie; Guilland, Charles; Gontier, Laure; Dufourcq, Thierry; Guenser, Josépha; Grimaldi, Juliette; Bourgade, Emilie; Ranjard, Lionel

2017-04-01

Some vineyard practices (tillage, chemical weeding or pest management) are generally known to impact the environment with particular negative effects on the diversity and the abundance of soil microorganisms, and cause water and soil pollutions. In an agro-ecological context, innovative cropping systems have been developed to improve ecosystem services. Among them, agroforestry offers strategies of sustainable land management practices. It consists in intercropping trees with annual/perennial/fodder crop on the same plot but it is weakly referenced with grapevine. The present study assesses the effects of intercropped and neighbouring trees on the soil of three agroforestry vineyards, in south-western France regions. More precisely soils of the different plots were sampled and the impact of the distance to the tree or to the neighbouring trees (forest) on soil microbial community has been considered. Indigenous soil microbial communities were characterized by a metagenomic approach that consisted in extracting the molecular microbial biomass, then in calculating the soil fungi/bacteria ratio - obtained by qPCR - and then in characterizing the soil microbial diversity - through Illumina sequencing of 16S and 18S regions. Our results showed a significant difference between the soil of agroforestry vineyards and the soil sampled in the neighbouring forest in terms of microbial abundance and diversity. However, only structure and composition of bacterial community seem to be influenced by the implanted trees in the vine plots. In addition, the comparison of microbial co-occurrence networks between vine and forest plots as well as inside vine plots according to distance to the tree allow revealing a more sensitive impact of agroforestry practices. Altogether, the results we obtained build up the first references for concerning the soil of agroforestry vineyards which will be interpreted in terms of soil quality, functioning and sustainability.

Artificial radionuclides in soil, flora and fauna

International Nuclear Information System (INIS)

Marej, A.N.

1984-01-01

Sources and ways of soil contamination by radionuclides, as well as the main regularities of radionuclide behaviour in soils, are discussed. Ways of radionuclide uptake by plants are discussed in detail, since radionuclide contamination of vegetation, and agricultural plants and pastures in particular, is one of the main factors, determining sanitary value of environmental contamination by radioactive substances

The leaf-litter earthworm fauna (Annelida: Oligochaeta) of forests in ...

African Journals Online (AJOL)

A qualitative survey of the leaf-litter earthworm fauna of 11 selected indigenous forests in Limpopo Province, South Africa, was conducted to identify the species present, to describe the communities and to assess the relationship between indigenous and exotic species. A total of 8185 individuals from 17 species (five ...

Soil mineral composition matters: response of microbial communities to phenanthrene and plant litter addition in long-term matured artificial soils.

Science.gov (United States)

Babin, Doreen; Vogel, Cordula; Zühlke, Sebastian; Schloter, Michael; Pronk, Geertje Johanna; Heister, Katja; Spiteller, Michael; Kögel-Knabner, Ingrid; Smalla, Kornelia

2014-01-01

The fate of polycyclic aromatic hydrocarbons (PAHs) in soil is determined by a suite of biotic and abiotic factors, and disentangling their role in the complex soil interaction network remains challenging. Here, we investigate the influence of soil composition on the microbial community structure and its response to the spiked model PAH compound phenanthrene and plant litter. We used long-term matured artificial soils differing in type of clay mineral (illite, montmorillonite) and presence of charcoal or ferrihydrite. The soils received an identical soil microbial fraction and were incubated for more than two years with two sterile manure additions. The matured artificial soils and a natural soil were subjected to the following spiking treatments: (I) phenanthrene, (II) litter, (III) litter + phenanthrene, (IV) unspiked control. Total community DNA was extracted from soil sampled on the day of spiking, 7, 21, and 63 days after spiking. Bacterial 16S rRNA gene and fungal internal transcribed spacer amplicons were quantified by qPCR and subjected to denaturing gradient gel electrophoresis (DGGE). DGGE analysis revealed that the bacterial community composition, which was strongly shaped by clay minerals after more than two years of incubation, changed in response to spiked phenanthrene and added litter. DGGE and qPCR showed that soil composition significantly influenced the microbial response to spiking. While fungal communities responded only in presence of litter to phenanthrene spiking, the response of the bacterial communities to phenanthrene was less pronounced when litter was present. Interestingly, microbial communities in all artificial soils were more strongly affected by spiking than in the natural soil, which might indicate the importance of higher microbial diversity to compensate perturbations. This study showed the influence of soil composition on the microbiota and their response to phenanthrene and litter, which may increase our understanding of

Soil microbial community profiles and functional diversity in limestone cedar glades

Science.gov (United States)

Cartwright, Jennifer M.; Dzantor, E. Kudjo; Momen, Bahram

2016-01-01

Rock outcrop ecosystems, such as limestone cedar glades (LCGs), are known for their rare and endemic plant species adapted to high levels of abiotic stress. Soils in LCGs are thin (< 25 cm), soil-moisture conditions fluctuate seasonally between xeric and saturated, and summer soil temperatures commonly exceed 48 °C. The effects of these stressors on soil microbial communities (SMC) remain largely unstudied, despite the importance of SMC-plant interactions in regulating the structure and function of terrestrial ecosystems. SMC profiles and functional diversity were characterized in LCGs using community level physiological profiling (CLPP) and plate-dilution frequency assays (PDFA). Most-probable number (MPN) estimates and microbial substrate-utilization diversity (H) were positively related to soil thickness, soil organic matter (OM), soil water content, and vegetation density, and were diminished in alkaline soil relative to circumneutral soil. Soil nitrate showed no relationship to SMCs, suggesting lack of N-limitation. Canonical correlation analysis indicated strong correlations between microbial CLPP patterns and several physical and chemical properties of soil, primarily temperature at the ground surface and at 4-cm depth, and secondarily soil-water content, enabling differentiation by season. Thus, it was demonstrated that several well-described abiotic determinants of plant community structure in this ecosystem are also reflected in SMC profiles.

Effects of biochar blends on microbial community composition in two coastal plain soils

Science.gov (United States)

The amendment of soil with biochar has been demonstrated to have an effect not only on the soil physicochemical properties, but also on soil microbial community composition and activity. Previous reports have demonstrated significant impacts on soil microbial community structure....

Testing nickel tolerance of Sorghastrum nutans and its associated soil microbial community from serpentine and prairie soils

International Nuclear Information System (INIS)

Doherty, Jennifer H.; Ji Baoming; Casper, Brenda B.

2008-01-01

Ecotypes of Sorghastrum nutans from a naturally metalliferous serpentine grassland and the tallgrass prairie were assessed for Ni tolerance and their utility in remediation of Ni-polluted soils. Plants were inoculated with serpentine arbuscular mycorrhizal (AM) root inoculum or whole soil microbial communities, originating from either prairie or serpentine, to test their effects on plant performance in the presence of Ni. Serpentine plants had marginally higher Ni tolerance as indicated by higher survival. Ni reduced plant biomass and AM root colonization for both ecotypes. The serpentine AM fungi and whole microbial community treatments decreased plant biomass relative to uninoculated plants, while the prairie microbial community had no effect. Differences in how the soil communities affect plant performance were not reflected in patterns of root colonization by AM fungi. Thus, serpentine plants may be suited for reclamation of Ni-polluted soils, but AM fungi that occur on serpentine do not improve Ni tolerance. - Ni tolerance of Sorghastrum nutans differs slightly between serpentine and prairie populations and is negatively affected by serpentine soil and root inoculation

Fertilization Shapes Bacterial Community Structure by Alteration of Soil pH

Directory of Open Access Journals (Sweden)

Yuting Zhang

2017-07-01

Full Text Available Application of chemical fertilizer or manure can affect soil microorganisms directly by supplying nutrients and indirectly by altering soil pH. However, it remains uncertain which effect mostly shapes microbial community structure. We determined soil bacterial diversity and community structure by 454 pyrosequencing the V1-V3 regions of 16S rRNA genes after 7-years (2007–2014 of applying chemical nitrogen, phosphorus and potassium (NPK fertilizers, composted manure or their combination to acidic (pH 5.8, near-neutral (pH 6.8 or alkaline (pH 8.4 Eutric Regosol soil in a maize-vegetable rotation in southwest China. In alkaline soil, nutrient sources did not affect bacterial Operational Taxonomic Unit (OTU richness or Shannon diversity index, despite higher available N, P, K, and soil organic carbon in fertilized than in unfertilized soil. In contrast, bacterial OTU richness and Shannon diversity index were significantly lower in acidic and near-neutral soils under NPK than under manure or their combination, which corresponded with changes in soil pH. Permutational multivariate analysis of variance showed that bacterial community structure was significantly affected across these three soils, but the PCoA ordination patterns indicated the effect was less distinct among nutrient sources in alkaline than in acidic and near-neural soils. Distance-based redundancy analysis showed that bacterial community structures were significantly altered by soil pH in acidic and near-neutral soils, but not by any soil chemical properties in alkaline soil. The relative abundance (% of most bacterial phyla was higher in near-neutral than in acidic or alkaline soils. The most dominant phyla were Proteobacteria (24.6%, Actinobacteria (19.7%, Chloroflexi (15.3% and Acidobacteria (12.6%; the medium dominant phyla were Bacterioidetes (5.3%, Planctomycetes (4.8%, Gemmatimonadetes (4.5%, Firmicutes (3.4%, Cyanobacteria (2.1%, Nitrospirae (1.8%, and candidate division TM7 (1

Fertilization Shapes Bacterial Community Structure by Alteration of Soil pH.

Science.gov (United States)

Zhang, Yuting; Shen, Hong; He, Xinhua; Thomas, Ben W; Lupwayi, Newton Z; Hao, Xiying; Thomas, Matthew C; Shi, Xiaojun

2017-01-01

Application of chemical fertilizer or manure can affect soil microorganisms directly by supplying nutrients and indirectly by altering soil pH. However, it remains uncertain which effect mostly shapes microbial community structure. We determined soil bacterial diversity and community structure by 454 pyrosequencing the V1-V3 regions of 16S rRNA genes after 7-years (2007-2014) of applying chemical nitrogen, phosphorus and potassium (NPK) fertilizers, composted manure or their combination to acidic (pH 5.8), near-neutral (pH 6.8) or alkaline (pH 8.4) Eutric Regosol soil in a maize-vegetable rotation in southwest China. In alkaline soil, nutrient sources did not affect bacterial Operational Taxonomic Unit (OTU) richness or Shannon diversity index, despite higher available N, P, K, and soil organic carbon in fertilized than in unfertilized soil. In contrast, bacterial OTU richness and Shannon diversity index were significantly lower in acidic and near-neutral soils under NPK than under manure or their combination, which corresponded with changes in soil pH. Permutational multivariate analysis of variance showed that bacterial community structure was significantly affected across these three soils, but the PCoA ordination patterns indicated the effect was less distinct among nutrient sources in alkaline than in acidic and near-neural soils. Distance-based redundancy analysis showed that bacterial community structures were significantly altered by soil pH in acidic and near-neutral soils, but not by any soil chemical properties in alkaline soil. The relative abundance (%) of most bacterial phyla was higher in near-neutral than in acidic or alkaline soils. The most dominant phyla were Proteobacteria (24.6%), Actinobacteria (19.7%), Chloroflexi (15.3%) and Acidobacteria (12.6%); the medium dominant phyla were Bacterioidetes (5.3%), Planctomycetes (4.8%), Gemmatimonadetes (4.5%), Firmicutes (3.4%), Cyanobacteria (2.1%), Nitrospirae (1.8%), and candidate division TM7 (1

Bioinformatic approaches reveal metagenomic characterization of soil microbial community.

Directory of Open Access Journals (Sweden)

Zhuofei Xu

Full Text Available As is well known, soil is a complex ecosystem harboring the most prokaryotic biodiversity on the Earth. In recent years, the advent of high-throughput sequencing techniques has greatly facilitated the progress of soil ecological studies. However, how to effectively understand the underlying biological features of large-scale sequencing data is a new challenge. In the present study, we used 33 publicly available metagenomes from diverse soil sites (i.e. grassland, forest soil, desert, Arctic soil, and mangrove sediment and integrated some state-of-the-art computational tools to explore the phylogenetic and functional characterizations of the microbial communities in soil. Microbial composition and metabolic potential in soils were comprehensively illustrated at the metagenomic level. A spectrum of metagenomic biomarkers containing 46 taxa and 33 metabolic modules were detected to be significantly differential that could be used as indicators to distinguish at least one of five soil communities. The co-occurrence associations between complex microbial compositions and functions were inferred by network-based approaches. Our results together with the established bioinformatic pipelines should provide a foundation for future research into the relation between soil biodiversity and ecosystem function.

Effects of acid rain and liming on the enchytraeid fauna in forest soils

International Nuclear Information System (INIS)

Graefe, U.

1989-01-01

The development of the enchytraeid community has been observed in a Solling beech forest over a period of 11 years. Eight out of 18 formerly established species have disappeared in one decade. The connection to soil chemical changes due to atmospheric deposition is discussed. A comparison of adjoining beech and spruce stands revealed considerably lower species numbers under spruce. The community under beech is developing in the direction of the species community in the spruce stand. Liming affects changes in the dominance structure. Mesophilic species are favoured, acidophilic are repressed. In an oak-beech stand near Hamburg even the recolonization by previously absent species was observed. Liming experiments with 25, 50 and 100 dt CaCO 3 /ha showed decreasing total abundance of enchytraeids proportional to the amount of lime. Species number, diversity and evenness increased with lime treatments up to 50 dt/ha. (orig.)

Soil microbial community and its interaction with soil carbon and nitrogen dynamics following afforestation in central China.

Science.gov (United States)

Deng, Qi; Cheng, Xiaoli; Hui, Dafeng; Zhang, Qian; Li, Ming; Zhang, Quanfa

2016-01-15

Afforestation may alter soil microbial community structure and function, and further affect soil carbon (C) and nitrogen (N) dynamics. Here we investigated soil microbial carbon and nitrogen (MBC and MBN) and microbial community [e.g. bacteria (B), fungi (F)] derived from phospholipid fatty acids (PLFAs) analysis in afforested (implementing woodland and shrubland plantations) and adjacent croplands in central China. Relationships of microbial properties with biotic factors [litter, fine root, soil organic carbon (SOC), total nitrogen (TN) and inorganic N], abiotic factors (soil temperature, moisture and pH), and major biological processes [basal microbial respiration, microbial metabolic quotient (qCO2), net N mineralization and nitrification] were developed. Afforested soils had higher mean MBC, MBN and MBN:TN ratios than the croplands due to an increase in litter input, but had lower MBC:SOC ratio resulting from low-quality (higher C:N ratio) litter. Afforested soils also had higher F:B ratio, which was probably attributed to higher C:N ratios in litter and soil, and shifts of soil inorganic N forms, water, pH and disturbance. Alterations in soil microbial biomass and community structure following afforestation were associated with declines in basal microbial respiration, qCO2, net N mineralization and nitrification, which likely maintained higher soil carbon and nitrogen storage and stability. Copyright © 2015 Elsevier B.V. All rights reserved.

Soil fertility evaluation and management by smallholder farmer communities in northern Tanzania

NARCIS (Netherlands)

Mowo, J.G.; Janssen, B.H.; Oenema, O.; German, L.A.; Mrema, J.P.; Shemdoe, R.S.

2006-01-01

The objective of this paper is to compare soil fertility evaluation based on experience and knowledge of smallholder farmer communities with the evaluation by scientists based on soil analysis and model calculations. The role of the smallholder farmer community in soil fertility evaluation and

Climate interacts with soil to produce beta diversity in Californian plant communities.

Science.gov (United States)

Fernandez-Going, B M; Harrison, S P; Anacker, B L; Safford, H D

2013-09-01

Spatially distinct communities can arise through interactions and feedbacks between abiotic and biotic factors. We suggest that, for plants, patches of infertile soils such as serpentine may support more distinct communities from those in the surrounding non-serpentine matrix in regions where the climate is more productive (i.e., warmer and/or wetter). Where both soil fertility and climatic productivity are high, communities may be dominated by plants with fast-growing functional traits, whereas where either soils or climate impose low productivity, species with stress-tolerant functional traits may predominate. As a result, both species and functional composition may show higher dissimilarity between patch and matrix in productive climates. This pattern may be reinforced by positive feedbacks, in which higher plant growth under favorable climate and soil conditions leads to higher soil fertility, further enhancing plant growth. For 96 pairs of sites across a 200-km latitudinal gradient in California, we found that the species and functional dissimilarities between communities on infertile serpentine and fertile non-serpentine soils were higher in more productive (wetter) regions. Woody species had more stress-tolerant functional traits on serpentine than non-serpentine soil, and as rainfall increased, woody species functional composition changed toward fast-growing traits on non-serpentine, but not on serpentine soils. Soil organic matter increased with rainfall, but only on non-serpentine soils, and the difference in organic matter between soils was positively correlated with plant community dissimilarity. These results illustrate a novel mechanism wherein climatic productivity is associated with higher species, functional, and landscape-level dissimilarity (beta diversity).

Evidence for the functional significance of diazotroph community structure in soil.

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Hsu, Shi-Fang; Buckley, Daniel H

2009-01-01

Microbial ecologists continue to seek a greater understanding of the factors that govern the ecological significance of microbial community structure. Changes in community structure have been shown to have functional significance for processes that are mediated by a narrow spectrum of organisms, such as nitrification and denitrification, but in some cases, functional redundancy in the community seems to buffer microbial ecosystem processes. The functional significance of microbial community structure is frequently obscured by environmental variation and is hard to detect in short-term experiments. We examine the functional significance of free-living diazotrophs in a replicated long-term tillage experiment in which extraneous variation is minimized and N-fixation rates can be related to soil characteristics and diazotroph community structure. Soil characteristics were found to be primarily impacted by tillage management, whereas N-fixation rates and diazotroph community structure were impacted by both biomass management practices and interactions between tillage and biomass management. The data suggest that the variation in diazotroph community structure has a greater impact on N-fixation rates than do soil characteristics at the site. N-fixation rates displayed a saturating response to increases in diazotroph community diversity. These results show that the changes in the community structure of free-living diazotrophs in soils can have ecological significance and suggest that this response is related to a change in community diversity.

Composition and Diversity of Soil Arthropods of Rajegwesi Meru Betiri National Park

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Hasan Zayadi

2013-09-01

Full Text Available Meru Betiri National Park (MBNP is one of the nature conservation area that has the potential of flora, fauna, and ecosystems that could develop as a nature-based tourism attraction. The existence of certain indicator species was related to estimation of stress level and disturbance on ecosystem stability for making strategic decisions about the restoration in this area. One of the important indicator species at forest ecosystem were soil arthropods. Aim this research were analyzed composition and diversity of soil arthropods at Rajegwesi, MBNP areas. The methods in this research used pitfall trap, measurement of distribution structure and soil arthropods composition based on the Shannon - Wiener index, Morisita similarity index and Importance Value Index (IVI. The number of families and individuals of soil arthropods found in the coastal area of Rajegwesi consists of 10 order with 21 families (702 individual. The number of individuals of the order Hymenoptera, Coleoptera, Collembola and Araneida was more widely found. Soil arthropods diversity index on each land use indicated that soil arthropod diversity in these areas were moderate. Soil arthropod community of orchards and forest had a similarity of species composition, whereas soil arthropod community of savanna had a similarity of species composition with paddy fields.

Survival of rapidly fluctuating natural low winter temperatures by High Arctic soil invertebrates

DEFF Research Database (Denmark)

Convey, Peter; Abbandonato, Holly; Bergan, Frode

2015-01-01

The extreme polar environment creates challenges for its resident invertebrate communities and the stress tolerance of some of these animals has been examined over many years. However, although it is well appreciated that standard air temperature records often fail to describe accurately conditions...... microhabitats. To assess survival of natural High Arctic soil invertebrate communities contained in soil and vegetation cores to natural winter temperature variations, the overwintering temperatures they experienced were manipulated by deploying cores in locations with varying snow accumulation: No Snow...... and did not decrease below -12. °C. Those under deep snow were even more stable and did not decline below -2. °C. Despite these striking differences in winter thermal regimes, there were no clear differences in survival of the invertebrate fauna between treatments, including oribatid, prostigmatid...

Effects of application of corn straw on soil microbial community structure during the maize growing season.

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Lu, Ping; Lin, Yin-Hua; Yang, Zhong-Qi; Xu, Yan-Peng; Tan, Fei; Jia, Xu-Dong; Wang, Miao; Xu, De-Rong; Wang, Xi-Zhuo

2015-01-01

This study investigated the influence of corn straw application on soil microbial communities and the relationship between such communities and soil properties in black soil. The crop used in this study was maize (Zea mays L.). The five treatments consisted of applying a gradient (50, 100, 150, and 200%) of shattered corn straw residue to the soil. Soil samples were taken from May through September during the 2012 maize growing season. The microbial community structure was determined using phospholipid fatty acid (PLFA) analysis. Our results revealed that the application of corn straw influenced the soil properties and increased the soil organic carbon and total nitrogen. Applying corn straw to fields also influenced the variation in soil microbial biomass and community composition, which is consistent with the variations found in soil total nitrogen (TN) and soil respiration (SR). However, the soil carbon-to-nitrogen ratio had no effect on soil microbial communities. The abundance of PLFAs, TN, and SR was higher in C1.5 than those in other treatments, suggesting that the soil properties and soil microbial community composition were affected positively by the application of corn straw to black soil. A Principal Component Analysis indicated that soil microbial communities were different in the straw decomposition processes. Moreover, the soil microbial communities from C1.5 were significantly different from those of CK (p soil and significant variations in the ratio of monounsaturated-to-branched fatty acids with different straw treatments that correlated with SR (p soil properties and soil microbial communities and that these properties affect these communities. The individual PLFA signatures were sensitive indicators that reflected the changes in the soil environment condition. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

[Effect of pine plantations on soil arthropods in a high Andean forest].

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León-Gamboa, Alba Lucía; Ramos, Carolina; García, Mary Ruth

2010-09-01

One of the most common problems in the Colombian mountains has been the replacement of native vegetation by pine plantations. Soil arthropods are a fundamental component of forest ecosystem, since they participate in the organic matter fragmentation, previous to decomposition. This role is more valuable in high altitude environments, where low temperatures limit the dynamics of biological processes, where the effects of pine plantations on soil arthropods are still not well-known. In a remnant of high-andean forest (Neusa - Colombia) and a pine plantation of about 50 years-old, it was evaluated the composition, richness and abundance of arthropods at surface (S), organic horizon (O) and mineral horizon (A) of soil, to establish the differences associated to the soil use transformation. It was used "Pitfall" sampling to register the movement of the epigeous fauna, and extraction by funnel Berlese for determining the fauna density from O and A horizons. The Shannon and Simpson indexes estimated the diversity at different places and horizons, and the trophic structure of the community was evaluated. Overall, there were collected 38 306 individuals from forest and 17 386 individuals from pine plantation, mainly distributed in Collembola (42.4%), Acari (27%), Diptera (17.6%) and Coleoptera (4.6%). The most important differences were given in the surface, where the mobilization in forest (86 individuals/day) almost triplicates the one in pine plantation (33 individuals/day). The differences in composition were given in Collembola, Araneae, Hemiptera, Homoptera and Hymenoptera. The dynamics of richness and abundance along the year had significant high values in the native forest than in the pine plantation. The general trophic structure was dominated by saprophagous (75%), followed by predators (14%) and phytophagous (9%), but in two layers of the pine plantation soil (S and O) this structural pattern was not given. Based on the results, it was concluded that pine

Do soil organisms affect aboveground litter decomposition in the semiarid Patagonian steppe, Argentina?

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Araujo, Patricia I; Yahdjian, Laura; Austin, Amy T

2012-01-01

Surface litter decomposition in arid and semiarid ecosystems is often faster than predicted by climatic parameters such as annual precipitation or evapotranspiration, or based on standard indices of litter quality such as lignin or nitrogen concentrations. Abiotic photodegradation has been demonstrated to be an important factor controlling aboveground litter decomposition in aridland ecosystems, but soil fauna, particularly macrofauna such as termites and ants, have also been identified as key players affecting litter mass loss in warm deserts. Our objective was to quantify the importance of soil organisms on surface litter decomposition in the Patagonian steppe in the absence of photodegradative effects, to establish the relative importance of soil organisms on rates of mass loss and nitrogen release. We estimated the relative contribution of soil fauna and microbes to litter decomposition of a dominant grass using litterboxes with variable mesh sizes that excluded groups of soil fauna based on size class (10, 2, and 0.01 mm), which were placed beneath shrub canopies. We also employed chemical repellents (naphthalene and fungicide). The exclusion of macro- and mesofauna had no effect on litter mass loss over 3 years (P = 0.36), as litter decomposition was similar in all soil fauna exclusions and naphthalene-treated litter. In contrast, reduction of fungal activity significantly inhibited litter decomposition (P soil fauna have been mentioned as a key control of litter decomposition in warm deserts, biogeographic legacies and temperature limitation may constrain the importance of these organisms in temperate aridlands, particularly in the southern hemisphere.

Pyrosequencing Based Microbial Community Analysis of Stabilized Mine Soils

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Park, J. E.; Lee, B. T.; Son, A.

2015-12-01

Heavy metals leached from exhausted mines have been causing severe environmental problems in nearby soils and groundwater. Environmental mitigation was performed based on the heavy metal stabilization using Calcite and steel slag in Korea. Since the soil stabilization only temporarily immobilizes the contaminants to soil matrix, the potential risk of re-leaching heavy metal still exists. Therefore the follow-up management of stabilized soils and the corresponding evaluation methods are required to avoid the consequent contamination from the stabilized soils. In this study, microbial community analysis using pyrosequencing was performed for assessing the potential leaching of the stabilized soils. As a result of rarefaction curve and Chao1 and Shannon indices, the stabilized soil has shown lower richness and diversity as compared to non-contaminated negative control. At the phyla level, as the degree of contamination increases, most of phyla decreased with only exception of increased proteobacteria. Among proteobacteria, gamma-proteobacteria increased against the heavy metal contamination. At the species level, Methylobacter tundripaludum of gamma-proteobacteria showed the highest relative portion of microbial community, indicating that methanotrophs may play an important role in either solubilization or immobilization of heavy metals in stabilized soils.

Structure of Fungal Communities in Sub-Irrigated Agricultural Soil from Cerrado Floodplains

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Elainy Cristina A. M. Oliveira

2016-05-01

Full Text Available This study aimed to evaluate the influence of soybean cultivation on the fungal community structure in a tropical floodplain area. Soil samples were collected from two different soybean cropland sites and a control area under native vegetation. The soil samples were collected at a depth of 0–10 cm soil during the off-season in July 2013. The genetic structure of the soil fungal microbial community was analyzed using the automated ribosomal intergenic spacer analysis (ARISA technique. Among the 26 phylotypes with abundance levels higher than 1% detected in the control area, five were also detected in the area cultivated for five years, and none of them was shared between the control area and the area cultivated for eight years. Analysis of similarity (ANOSIM revealed differences in fungal community structure between the control area and the soybean cropland sites, and also between the soybean cropland sites. ANOSIM results were confirmed by multivariate statistics, which additionally revealed a nutrient-dependent relation for the fungal community structure in agricultural soil managed for eight consecutive years. The results indicated that land use affects soil chemical properties and richness and structure of the soil fungal microbial community in a tropical floodplain agricultural area, and the effects became more evident to the extent that soil was cultivated for soybean for more time.

Fungal Community Structure as an Indicator of Soil Agricultural Management Effects in the Cerrado

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Alana de Almeida Valadares-Pereira

2017-11-01

Full Text Available ABSTRACT Forest-to-agriculture conversion and soil management practices for soybean cropping are frequently performed in the Cerrado (Brazilian tropical savanna. However, the effects of these practices on the soil microbial communities are still unknown. We evaluated and compared the fungal community structure in soil from soybean cropland with soil under native Cerrado vegetation at different times of the year in the Tocantins State. Soil samples were collected in two periods after planting (December and in two periods during the soybean reproductive growth stage (February. Concomitantly, soil samples were collected from an area under native Cerrado vegetation surrounding the agricultural area. The soil DNA was analyzed using a fingerprinting method termed Automated Ribosomal Intergenic Space Analysis (ARISA to assess the fungal community structure in the soil. Differences in the fungal community structure in the soil were found when comparing soybean cropland with the native vegetation (R = 0.932 for sampling 1 and R = 0.641 for sampling 2. Changes in the fungal community structure after management practices for soybean planting in Cerrado areas were related to changes in soil properties, mainly in copper, calcium, and iron contents, cation exchange capacity, base saturation, and calcium to magnesium ratio. These results show the changes in the fungal community structure in the soil as an effect of agricultural soil management in Cerrado vegetation in the state of Tocantins.

Selective progressive response of soil microbial community to wild oat roots

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DeAngelis, K.M.; Brodie, E.L.; DeSantis, T.Z.; Andersen, G.L.; Lindow, S.E.; Firestone, M.K.

2008-10-01

Roots moving through soil enact physical and chemical changes that differentiate rhizosphere from bulk soil, and the effects of these changes on soil microorganisms have long been a topic of interest. Use of a high-density 16S rRNA microarray (PhyloChip) for bacterial and archaeal community analysis has allowed definition of the populations that respond to the root within the complex grassland soil community; this research accompanies previously reported compositional changes, including increases in chitinase and protease specific activity, cell numbers and quorum sensing signal. PhyloChip results showed a significant change in 7% of the total rhizosphere microbial community (147 of 1917 taxa); the 7% response value was confirmed by16S rRNA T-RFLP analysis. This PhyloChip-defined dynamic subset was comprised of taxa in 17 of the 44 phyla detected in all soil samples. Expected rhizosphere-competent phyla, such as Proteobacteria and Firmicutes, were well represented, as were less-well-documented rhizosphere colonizers including Actinobacteria, Verrucomicrobia and Nitrospira. Richness of Bacteroidetes and Actinobacteria decreased in soil near the root tip compared to bulk soil, but then increased in older root zones. Quantitative PCR revealed {beta}-Proteobacteria and Actinobacteria present at about 10{sup 8} copies of 16S rRNA genes g{sup -1} soil, with Nitrospira having about 10{sup 5} copies g{sup -1} soil. This report demonstrates that changes in a relatively small subset of the soil microbial community are sufficient to produce substantial changes in function in progressively more mature rhizosphere zones.

Long- term manure exposure increases soil bacterial community potential for plasmid uptake

DEFF Research Database (Denmark)

Musovic, Sanin; Klümper, Uli; Dechesne, Arnaud

2014-01-01

Microbial communities derived from soils subject to different agronomic treatments were challenged with three broad host range plasmids, RP4, pIPO2tet and pRO101, via solid surface filter matings to assess their permissiveness. Approximately 1 in 10 000 soil bacterial cells could receive and main......Microbial communities derived from soils subject to different agronomic treatments were challenged with three broad host range plasmids, RP4, pIPO2tet and pRO101, via solid surface filter matings to assess their permissiveness. Approximately 1 in 10 000 soil bacterial cells could receive...... and maintain the plasmids. The community permissiveness increased up to 100% in communities derived from manured soil. While the plasmid transfer frequency was significantly influenced by both the type of plasmid and the agronomic treatment, the diversity of the transconjugal pools was purely plasmid dependent...

Diversity of bacterial communities along a petroleum contamination gradient in desert soils.

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Abed, Raeid M M; Al-Kindi, Sumaiya; Al-Kharusi, Samiha

2015-01-01

Microbial communities in oil-polluted desert soils have been rarely studied compared to their counterparts from freshwater and marine environments. We investigated bacterial diversity and changes therein in five desert soils exposed to different levels of oil pollution. Automated rRNA intergenic spacer (ARISA) analysis profiles showed that the bacterial communities of the five soils were profoundly different (analysis of similarities (ANOSIM), R = 0.45, P pollution levels. Multivariate analyses of ARISA profiles revealed that the microbial communities in the S soil, which contains the highest level of contamination, were different from the other soils and formed a completely separate cluster. A total of 16,657 ribosomal sequences were obtained, with 42-89 % of these sequences belonging to the phylum Proteobacteria. While sequences belonging to Betaproteobacteria, Gammaproteobacteria, Bacilli, and Actinobacteria were encountered in all soils, sequences belonging to anaerobic bacteria from the classes Deltaproteobacteria, Clostridia, and Anaerolineae were only detected in the S soil. Sequences belonging to the genus Terriglobus of the class Acidobacteria were only detected in the B3 soil with the lowest level of contamination. Redundancy analysis (RDA) showed that oil contamination level was the most determinant factor that explained variations in the microbial communities. We conclude that the exposure to different levels of oil contamination exerts a strong selective pressure on bacterial communities and that desert soils are rich in aerobic and anaerobic bacteria that could potentially contribute to the degradation of hydrocarbons.

Colonization patterns of soil microbial communities in the Atacama Desert.

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Crits-Christoph, Alexander; Robinson, Courtney K; Barnum, Tyler; Fricke, W Florian; Davila, Alfonso F; Jedynak, Bruno; McKay, Christopher P; Diruggiero, Jocelyne

2013-11-20

The Atacama Desert is one of the driest deserts in the world and its soil, with extremely low moisture, organic carbon content, and oxidizing conditions, is considered to be at the dry limit for life. Analyses of high throughput DNA sequence data revealed that bacterial communities from six geographic locations in the hyper-arid core and along a North-South moisture gradient were structurally and phylogenetically distinct (ANOVA test for observed operating taxonomic units at 97% similarity (OTU0.03), P microbial communities' diversity metrics (least squares linear regression for observed OTU0.03 and air RH and soil conductivity, P PCoA Spearman's correlation for air RH and soil conductivity, P <0.0001), indicating that water availability and salt content are key factors in shaping the Atacama soil microbiome. Mineralization studies showed communities actively metabolizing in all soil samples, with increased rates in soils from the southern locations. Our results suggest that microorganisms in the driest soils of the Atacama Desert are in a state of stasis for most of the time, but can potentially metabolize if presented with liquid water for a sufficient duration. Over geological time, rare rain events and physicochemical factors potentially played a major role in selecting micro-organisms that are most adapted to extreme desiccating conditions.

Soil microbial community structure and nitrogen cycling responses to agroecosystem management and carbon substrate addition