Variance Function Partially Linear Single-Index Models1.
Lian, Heng; Liang, Hua; Carroll, Raymond J
2015-01-01
We consider heteroscedastic regression models where the mean function is a partially linear single index model and the variance function depends upon a generalized partially linear single index model. We do not insist that the variance function depend only upon the mean function, as happens in the classical generalized partially linear single index model. We develop efficient and practical estimation methods for the variance function and for the mean function. Asymptotic theory for the parametric and nonparametric parts of the model is developed. Simulations illustrate the results. An empirical example involving ozone levels is used to further illustrate the results, and is shown to be a case where the variance function does not depend upon the mean function.
Generalized Functional Linear Models With Semiparametric Single-Index Interactions
Li, Yehua
2010-06-01
We introduce a new class of functional generalized linear models, where the response is a scalar and some of the covariates are functional. We assume that the response depends on multiple covariates, a finite number of latent features in the functional predictor, and interaction between the two. To achieve parsimony, the interaction between the multiple covariates and the functional predictor is modeled semiparametrically with a single-index structure. We propose a two step estimation procedure based on local estimating equations, and investigate two situations: (a) when the basis functions are pre-determined, e.g., Fourier or wavelet basis functions and the functional features of interest are known; and (b) when the basis functions are data driven, such as with functional principal components. Asymptotic properties are developed. Notably, we show that when the functional features are data driven, the parameter estimates have an increased asymptotic variance, due to the estimation error of the basis functions. Our methods are illustrated with a simulation study and applied to an empirical data set, where a previously unknown interaction is detected. Technical proofs of our theoretical results are provided in the online supplemental materials.
Jiang, Fei; Ma, Yanyuan; Wang, Yuanjia
We propose a generalized partially linear functional single index risk score model for repeatedly measured outcomes where the index itself is a function of time. We fuse the nonparametric kernel method and regression spline method, and modify the generalized estimating equation to facilitate estimation and inference. We use local smoothing kernel to estimate the unspecified coefficient functions of time, and use B-splines to estimate the unspecified function of the single index component. The covariance structure is taken into account via a working model, which provides valid estimation and inference procedure whether or not it captures the true covariance. The estimation method is applicable to both continuous and discrete outcomes. We derive large sample properties of the estimation procedure and show different convergence rate of each component of the model. The asymptotic properties when the kernel and regression spline methods are combined in a nested fashion has not been studied prior to this work even in the independent data case.
Linear Classification Functions.
Huberty, Carl J.; Smith, Jerry D.
Linear classification functions (LCFs) arise in a predictive discriminant analysis for the purpose of classifying experimental units into criterion groups. The relative contribution of the response variables to classification accuracy may be based on LCF-variable correlations for each group. It is proved that, if the raw response measures are…
Functionalized linear and cyclic polyolefins
Tuba, Robert; Grubbs, Robert H.
2018-02-13
This invention relates to methods and compositions for preparing linear and cyclic polyolefins. More particularly, the invention relates to methods and compositions for preparing functionalized linear and cyclic polyolefins via olefin metathesis reactions. Polymer products produced via the olefin metathesis reactions of the invention may be utilized for a wide range of materials applications. The invention has utility in the fields of polymer and materials chemistry and manufacture.
Identification of single-input-single-output quantum linear systems
Levitt, Matthew; GuÅ£ǎ, Mǎdǎlin
2017-03-01
The purpose of this paper is to investigate system identification for single-input-single-output general (active or passive) quantum linear systems. For a given input we address the following questions: (1) Which parameters can be identified by measuring the output? (2) How can we construct a system realization from sufficient input-output data? We show that for time-dependent inputs, the systems which cannot be distinguished are related by symplectic transformations acting on the space of system modes. This complements a previous result of Guţă and Yamamoto [IEEE Trans. Autom. Control 61, 921 (2016), 10.1109/TAC.2015.2448491] for passive linear systems. In the regime of stationary quantum noise input, the output is completely determined by the power spectrum. We define the notion of global minimality for a given power spectrum, and characterize globally minimal systems as those with a fully mixed stationary state. We show that in the case of systems with a cascade realization, the power spectrum completely fixes the transfer function, so the system can be identified up to a symplectic transformation. We give a method for constructing a globally minimal subsystem direct from the power spectrum. Restricting to passive systems the analysis simplifies so that identifiability may be completely understood from the eigenvalues of a particular system matrix.
A Trivial Linear Discriminant Function
Directory of Open Access Journals (Sweden)
Shuichi Shinmura
2015-11-01
Full Text Available In this paper, we focus on the new model selection procedure of the discriminant analysis. Combining re-sampling technique with k-fold cross validation, we develop a k-fold cross validation for small sample method. By this breakthrough, we obtain the mean error rate in the validation samples (M2 and the 95\\% confidence interval (CI of discriminant coefficient. Moreover, we propose the model selection procedure in which the model having a minimum M2 was chosen to the best model. We apply this new method and procedure to the pass/ fail determination of exam scores. In this case, we fix the constant =1 for seven linear discriminant functions (LDFs and several good results were obtained as follows: 1 M2 of Fisher's LDF are over 4.6\\% worse than Revised IP-OLDF. 2 A soft-margin SVM for penalty c=1 (SVM1 is worse than another mathematical programming (MP based LDFs and logistic regression . 3 The 95\\% CI of the best discriminant coefficients was obtained. Seven LDFs except for Fisher's LDF are almost the same as a trivial LDF for the linear separable model. Furthermore, if we choose the median of the coefficient of seven LDFs except for Fisher's LDF, those are almost the same as the trivial LDF for the linear separable model.
Reduction of Linear Functional Systems using Fuhrmann's Equivalence
Directory of Open Access Journals (Sweden)
Mohamed S. Boudellioua
2016-11-01
Full Text Available Functional systems arise in the treatment of systems of partial differential equations, delay-differential equations, multidimensional equations, etc. The problem of reducing a linear functional system to a system containing fewer equations and unknowns was first studied by Serre. Finding an equivalent presentation of a linear functional system containing fewer equations and fewer unknowns can generally simplify both the study of the structural properties of the linear functional system and of different numerical analysis issues, and it can sometimes help in solving the linear functional system. In this paper, Fuhrmann's equivalence is used to present a constructive result on the reduction of under-determined linear functional systems to a single equation involving a single unknown. This equivalence transformation has been studied by a number of authors and has been shown to play an important role in the theory of linear functional systems.
Testing for one Generalized Linear Single Order Parameter
DEFF Research Database (Denmark)
Ellegaard, Niels Langager; Christensen, Tage Emil; Dyre, Jeppe
work the order parameter may be chosen to have a non-exponential relaxation. The model predictions contradict the general consensus of the properties of viscous liquids in two ways: (i) The model predicts that following a linear isobaric temperature step, the normalized volume and entalpy relaxation......We examine a linear single order parameter model for thermoviscoelastic relaxation in viscous liquids, allowing for a distribution of relaxation times. In this model the relaxation of volume and entalpy is completely described by the relaxation of one internal order parameter. In contrast to prior...... functions are identical. This assumption conflicts with some (but not all) reports, utilizing the Tool-Narayanaswamy formalism to extrapolate from non-linear measurements to the linear regime. (ii) The model predicts that the theoretical "linear Prigogine-Defay" ratio is one. This ratio has never been...
Introducing Linear Functions: An Alternative Statistical Approach
Nolan, Caroline; Herbert, Sandra
2015-01-01
The introduction of linear functions is the turning point where many students decide if mathematics is useful or not. This means the role of parameters and variables in linear functions could be considered to be "threshold concepts". There is recognition that linear functions can be taught in context through the exploration of linear…
Energy Technology Data Exchange (ETDEWEB)
Reshak, A.H. [New Technologies-Research Center, University of West Bohemia, Univerzitni 8, 306 14 Pilsen (Czech Republic); Center of Excellence Geopolymer and Green Technology, School of Material Engineering, University Malaysia Perlis, 01007 Kangar, Perlis (Malaysia); Khan, Wilayat, E-mail: walayat76@gmail.com [New Technologies-Research Center, University of West Bohemia, Univerzitni 8, 306 14 Pilsen (Czech Republic)
2014-04-01
Highlights: • FP-LAPW technique is used for calculating the electronic structure. • The band structure shows that the calculated compound is semiconductor. • The complex dielectric function has been calculated. • Nonlinear optical properties has also been calculated. • This compound can be used for molecular engineering of the crystals. - Abstract: Self-consistent calculations is performed using the full potential linear augmented plane wave (FP-LAPW) technique based on density functional theory (DFT) to investigate the electronic band structure, density of states, electronic charge density, linear and non-linear optical properties of α-LiAlTe{sub 2} compound having tetragonal symmetry with space group I4{sup ¯}2d. The electronic structure are calculated using the Ceperley Alder local density approach (CA-LDA), Perdew Burke and Ernzerhof generalize gradient approach (PBE-GGA), Engel–Vosko generalize gradient approach (EVGGA) and modified Becke Johnson approach (mBJ). Band structure calculations of (α-LiAlTe{sub 2}) depict semiconducting nature with direct band gap of 2.35 eV (LDA), 2.48 eV (GGA), 3.05 eV (EVGGA) and 3.13 eV (mBJ), which is comparable to experimental value. The calculated electronic charge density show ionic interaction between Te and Li atoms and polar covalent interaction between Al and Te atoms. Some optical susceptibilities like dielectric constants, refractive index, extension co-efficient, reflectivity and energy loss function have been calculated and analyzed on the basis of electronic structure. The compound α-LiAlTe{sub 2} provides a considerable negative value of birefringence of −0.01. Any anisotropy observed in the linear optical properties which are in favor to enhance the nonlinear optical properties. The symbol χ{sub abc}{sup (2)}(ω) represents the second order nonlinear optical susceptibilities, possess six non-zero components in this symmetry (tetragonal), called: 1 2 3, 2 1 3, 2 3 1, 1 3 2, 3 1 2 and 3 2 1
Optimized multiple linear mappings for single image super-resolution
Zhang, Kaibing; Li, Jie; Xiong, Zenggang; Liu, Xiuping; Gao, Xinbo
2017-12-01
Learning piecewise linear regression has been recognized as an effective way for example learning-based single image super-resolution (SR) in literature. In this paper, we employ an expectation-maximization (EM) algorithm to further improve the SR performance of our previous multiple linear mappings (MLM) based SR method. In the training stage, the proposed method starts with a set of linear regressors obtained by the MLM-based method, and then jointly optimizes the clustering results and the low- and high-resolution subdictionary pairs for regression functions by using the metric of the reconstruction errors. In the test stage, we select the optimal regressor for SR reconstruction by accumulating the reconstruction errors of m-nearest neighbors in the training set. Thorough experimental results carried on six publicly available datasets demonstrate that the proposed SR method can yield high-quality images with finer details and sharper edges in terms of both quantitative and perceptual image quality assessments.
Understanding Linear Functions and Their Representations
Wells, Pamela J.
2015-01-01
Linear functions are an important part of the middle school mathematics curriculum. Students in the middle grades gain fluency by working with linear functions in a variety of representations (NCTM 2001). Presented in this article is an activity that was used with five eighth-grade classes at three different schools. The activity contains 15 cards…
LINTAB, Linear Interpolable Tables from any Continuous Variable Function
International Nuclear Information System (INIS)
1988-01-01
1 - Description of program or function: LINTAB is designed to construct linearly interpolable tables from any function. The program will start from any function of a single continuous variable... FUNKY(X). By user input the function can be defined, (1) Over 1 to 100 X ranges. (2) Within each X range the function is defined by 0 to 50 constants. (3) At boundaries between X ranges the function may be continuous or discontinuous (depending on the constants used to define the function within each X range). 2 - Method of solution: LINTAB will construct a table of X and Y values where the tabulated (X,Y) pairs will be exactly equal to the function (Y=FUNKY(X)) and linear interpolation between the tabulated pairs will be within any user specified fractional uncertainty of the function for all values of X within the requested X range
Linear scaling of density functional algorithms
International Nuclear Information System (INIS)
Stechel, E.B.; Feibelman, P.J.; Williams, A.R.
1993-01-01
An efficient density functional algorithm (DFA) that scales linearly with system size will revolutionize electronic structure calculations. Density functional calculations are reliable and accurate in determining many condensed matter and molecular ground-state properties. However, because current DFA's, including methods related to that of Car and Parrinello, scale with the cube of the system size, density functional studies are not routinely applied to large systems. Linear scaling is achieved by constructing functions that are both localized and fully occupied, thereby eliminating the need to calculate global eigenfunctions. It is, however, widely believed that exponential localization requires the existence of an energy gap between the occupied and unoccupied states. Despite this, the authors demonstrate that linear scaling can still be achieved for metals. Using a linear scaling algorithm, they have explicitly constructed localized, almost fully occupied orbitals for the quintessential metallic system, jellium. The algorithm is readily generalizable to any system geometry and Hamiltonian. They will discuss the conceptual issues involved, convergence properties and scaling for their new algorithm
A linear combination of modified Bessel functions
Shitzer, A.; Chato, J. C.
1971-01-01
A linear combination of modified Bessel functions is defined, discussed briefly, and tabulated. This combination was found to recur in the analysis of various heat transfer problems and in the analysis of the thermal behavior of living tissue when modeled by cylindrical shells.
Linear functional analysis for scientists and engineers
Limaye, Balmohan V
2016-01-01
This book provides a concise and meticulous introduction to functional analysis. Since the topic draws heavily on the interplay between the algebraic structure of a linear space and the distance structure of a metric space, functional analysis is increasingly gaining the attention of not only mathematicians but also scientists and engineers. The purpose of the text is to present the basic aspects of functional analysis to this varied audience, keeping in mind the considerations of applicability. A novelty of this book is the inclusion of a result by Zabreiko, which states that every countably subadditive seminorm on a Banach space is continuous. Several major theorems in functional analysis are easy consequences of this result. The entire book can be used as a textbook for an introductory course in functional analysis without having to make any specific selection from the topics presented here. Basic notions in the setting of a metric space are defined in terms of sequences. These include total boundedness, c...
Linear density response function in the projector augmented wave method
DEFF Research Database (Denmark)
Yan, Jun; Mortensen, Jens Jørgen; Jacobsen, Karsten Wedel
2011-01-01
We present an implementation of the linear density response function within the projector-augmented wave method with applications to the linear optical and dielectric properties of both solids, surfaces, and interfaces. The response function is represented in plane waves while the single...... functions of Si, C, SiC, AlP, and GaAs compare well with previous calculations. While optical properties of semiconductors, in particular excitonic effects, are generally not well described by ALDA, we obtain excellent agreement with experiments for the surface loss function of graphene and the Mg(0001......) surface with plasmon energies deviating by less than 0.2 eV. Finally, the method is applied to study the influence of substrates on the plasmon excitations in graphene....
Linear Prediction Using Refined Autocorrelation Function
Directory of Open Access Journals (Sweden)
M. Shahidur Rahman
2007-07-01
Full Text Available This paper proposes a new technique for improving the performance of linear prediction analysis by utilizing a refined version of the autocorrelation function. Problems in analyzing voiced speech using linear prediction occur often due to the harmonic structure of the excitation source, which causes the autocorrelation function to be an aliased version of that of the vocal tract impulse response. To estimate the vocal tract characteristics accurately, however, the effect of aliasing must be eliminated. In this paper, we employ homomorphic deconvolution technique in the autocorrelation domain to eliminate the aliasing effect occurred due to periodicity. The resulted autocorrelation function of the vocal tract impulse response is found to produce significant improvement in estimating formant frequencies. The accuracy of formant estimation is verified on synthetic vowels for a wide range of pitch frequencies typical for male and female speakers. The validity of the proposed method is also illustrated by inspecting the spectral envelopes of natural speech spoken by high-pitched female speaker. The synthesis filter obtained by the current method is guaranteed to be stable, which makes the method superior to many of its alternatives.
Energy Technology Data Exchange (ETDEWEB)
Yuan, Rong [Univ. of California, Berkeley, CA (United States)
2007-01-01
Linear elastic fracture mechanics is widely used in industry because it established simple and explicit relationships between the permissible loading conditions and the critical crack size that is allowed in a structure. Stress intensity factors are the above-mentioned functional expressions that relate load with crack size through geometric functions or weight functions. Compliance functions are to determine the crack/flaw size in a structure when optical inspection is inconvenient. As a result, geometric functions, weight functions and compliance functions have been intensively studied to determine the stress intensity factor expressions for different geometries. However, the relations between these functions have received less attention. This work is therefore to investigate the intrinsic relationships between these functions. Theoretical derivation was carried out and the results were verified on single-edge cracked plate under tension and bending. It is found out that the geometric function is essentially the non-dimensional weight function at the loading point. The compliance function is composed of two parts: a varying part due to crack extension and a constant part from the intact structure if no crack exists. The derivative of the compliance function at any location is the product of the geometric function and the weight function at the evaluation point. Inversely, the compliance function can be acquired by the integration of the product of the geometric function and the weight function with respect to the crack size. The integral constant is just the unchanging compliance from the intact structure. Consequently, a special application of the relations is to obtain the compliance functions along a crack once the geometric function and weight functions are known. Any of the three special functions can be derived once the other two functions are known. These relations may greatly simplify the numerical process in obtaining either geometric functions, weight
Linear program differentiation for single-channel speech separation
DEFF Research Database (Denmark)
Pearlmutter, Barak A.; Olsson, Rasmus Kongsgaard
2006-01-01
Many apparently difficult problems can be solved by reduction to linear programming. Such problems are often subproblems within larger systems. When gradient optimisation of the entire larger system is desired, it is necessary to propagate gradients through the internally-invoked LP solver....... For instance, when an intermediate quantity z is the solution to a linear program involving constraint matrix A, a vector of sensitivities dE/dz will induce sensitivities dE/dA. Here we show how these can be efficiently calculated, when they exist. This allows algorithmic differentiation to be applied...... to algorithms that invoke linear programming solvers as subroutines, as is common when using sparse representations in signal processing. Here we apply it to gradient optimisation of over complete dictionaries for maximally sparse representations of a speech corpus. The dictionaries are employed in a single...
Linear optical quantum computing in a single spatial mode.
Humphreys, Peter C; Metcalf, Benjamin J; Spring, Justin B; Moore, Merritt; Jin, Xian-Min; Barbieri, Marco; Kolthammer, W Steven; Walmsley, Ian A
2013-10-11
We present a scheme for linear optical quantum computing using time-bin-encoded qubits in a single spatial mode. We show methods for single-qubit operations and heralded controlled-phase (cphase) gates, providing a sufficient set of operations for universal quantum computing with the Knill-Laflamme-Milburn [Nature (London) 409, 46 (2001)] scheme. Our protocol is suited to currently available photonic devices and ideally allows arbitrary numbers of qubits to be encoded in the same spatial mode, demonstrating the potential for time-frequency modes to dramatically increase the quantum information capacity of fixed spatial resources. As a test of our scheme, we demonstrate the first entirely single spatial mode implementation of a two-qubit quantum gate and show its operation with an average fidelity of 0.84±0.07.
Single-pulse electrons from a linear accelerator
International Nuclear Information System (INIS)
Antoku, Shigetoshi; Sunayashiki, Tadashi; Takeoka, Seiji; Kato, Kazushi
1976-01-01
The electronic circuits of a 35 MeV linear accelerator at Hiroshima University were modified to produce single-pulse electrons. Single-pulse electrons were obtained by synchronizing one of eight pulses from an electron gun modulator, 120 pps, to one of the micro-waves from a klystron, 15 pps. After single-pulse electrons were discharged, a signal was relayed to a stop-gate circuit from a binary scaler which was connected to the gun modulator. Although reproducibility of single-pulse electrons and stability of electron output per pulse were not completely satisfactory, it was possible to use for radiobiological studies. Biological effects of single-pulse electrons (energy: 25 MeV, dose rate: 10 10 rad/min) on cultured mammalian cells and on mice were nearly equal to those of multi-pulse electrons (25 MeV, 10 7 rad/min) and Co-60 γ-rays (dose rate: 100 rad/min). (auth.)
Deformation Prediction Using Linear Polynomial Functions ...
African Journals Online (AJOL)
The predictions are compared with measured data reported in literature and the results are discussed. The computational aspects of implementation of the model are also discussed briefly. Keywords: Linear Polynomial, Structural Deformation, Prediction Journal of the Nigerian Association of Mathematical Physics, Volume ...
Non-linear friction in a single crystal of zirconium
International Nuclear Information System (INIS)
Ritchie, I.G.; Atrens, A.; Sprungmann, K.W.
1980-04-01
Non-linear internal friction phenomena in a single crystal of zirconium are investigated. Both the interactions between dislocations and immobile obstacles and between dislocations and mobile pinning points are involved. It is shown that vibration conditioning and programmed vibration annealing can be used to separate the time-dependent and strain-amplitude-dependent components of the internal friction. An impurity peaking effect has been generated by altering the effective concentration of obstacles by step changes in strain amplitude and vibration conditioning. Repeated thermal cycling at low strain amplitudes, through the terminal solid solubility boundary for hydrogen in zirconium, does not lead to the cumulative increase in dislocation density observed when polycrystalline samples are treated similarly. (auth)
The role of dendritic non-linearities in single neuron computation
Directory of Open Access Journals (Sweden)
Boris Gutkin
2014-05-01
Full Text Available Experiment has demonstrated that summation of excitatory post-synaptic protientials (EPSPs in dendrites is non-linear. The sum of multiple EPSPs can be larger than their arithmetic sum, a superlinear summation due to the opening of voltage-gated channels and similar to somatic spiking. The so-called dendritic spike. The sum of multiple of EPSPs can also be smaller than their arithmetic sum, because the synaptic current necessarily saturates at some point. While these observations are well-explained by biophysical models the impact of dendritic spikes on computation remains a matter of debate. One reason is that dendritic spikes may fail to make the neuron spike; similarly, dendritic saturations are sometime presented as a glitch which should be corrected by dendritic spikes. We will provide solid arguments against this claim and show that dendritic saturations as well as dendritic spikes enhance single neuron computation, even when they cannot directly make the neuron fire. To explore the computational impact of dendritic spikes and saturations, we are using a binary neuron model in conjunction with Boolean algebra. We demonstrate using these tools that a single dendritic non-linearity, either spiking or saturating, combined with somatic non-linearity, enables a neuron to compute linearly non-separable Boolean functions (lnBfs. These functions are impossible to compute when summation is linear and the exclusive OR is a famous example of lnBfs. Importantly, the implementation of these functions does not require the dendritic non-linearity to make the neuron spike. Next, We show that reduced and realistic biophysical models of the neuron are capable of computing lnBfs. Within these models and contrary to the binary model, the dendritic and somatic non-linearity are tightly coupled. Yet we show that these neuron models are capable of linearly non-separable computations.
Basic methods of linear functional analysis
Pryce, John D
2011-01-01
Introduction to the themes of mathematical analysis, geared toward advanced undergraduate and graduate students. Topics include operators, function spaces, Hilbert spaces, and elementary Fourier analysis. Numerous exercises and worked examples.1973 edition.
Linear measure functional differential equations with infinite delay
Monteiro, G. (Giselle Antunes); Slavík, A.
2014-01-01
We use the theory of generalized linear ordinary differential equations in Banach spaces to study linear measure functional differential equations with infinite delay. We obtain new results concerning the existence, uniqueness, and continuous dependence of solutions. Even for equations with a finite delay, our results are stronger than the existing ones. Finally, we present an application to functional differential equations with impulses.
Linear dynamic models for classification of single-trial EEG.
Samdin, S Balqis; Ting, Chee-Ming; Salleh, Sh-Hussain; Ariff, A K; Mohd Noor, A B
2013-01-01
This paper investigates the use of linear dynamic models (LDMs) to improve classification of single-trial EEG signals. Existing dynamic classification of EEG uses discrete-state hidden Markov models (HMMs) based on piecewise-stationary assumption, which is inadequate for modeling the highly non-stationary dynamics underlying EEG. The continuous hidden states of LDMs could better describe this continuously changing characteristic of EEG, and thus improve the classification performance. We consider two examples of LDM: a simple local level model (LLM) and a time-varying autoregressive (TVAR) state-space model. AR parameters and band power are used as features. Parameter estimation of the LDMs is performed by using expectation-maximization (EM) algorithm. We also investigate different covariance modeling of Gaussian noises in LDMs for EEG classification. The experimental results on two-class motor-imagery classification show that both types of LDMs outperform the HMM baseline, with the best relative accuracy improvement of 14.8% by LLM with full covariance for Gaussian noises. It may due to that LDMs offer more flexibility in fitting the underlying dynamics of EEG.
A Study on Linear Inequality Representation of Social Welfare Functions
Keisuke Sato; Yoshitsugu Yamamoto
2006-01-01
This paper presents a study on the recently proposed linear inequality representation of Arrovian Social Welfare Functions (ASWFs). We first give an alternative proof of the ASWF integer linear inequality representation theorem, and then show several sufficient conditions on preference domains for the linear inequalities of the representation to form integral polytopes. We also show that a given probabilistic ASWF induces a real vector satisfying the inequalities.
Conserved linear dynamics of single-molecule Brownian motion
Serag, Maged F.; Habuchi, Satoshi
2017-06-01
Macromolecular diffusion in homogeneous fluid at length scales greater than the size of the molecule is regarded as a random process. The mean-squared displacement (MSD) of molecules in this regime increases linearly with time. Here we show that non-random motion of DNA molecules in this regime that is undetectable by the MSD analysis can be quantified by characterizing the molecular motion relative to a latticed frame of reference. Our lattice occupancy analysis reveals unexpected sub-modes of motion of DNA that deviate from expected random motion in the linear, diffusive regime. We demonstrate that a subtle interplay between these sub-modes causes the overall diffusive motion of DNA to appear to conform to the linear regime. Our results show that apparently random motion of macromolecules could be governed by non-random dynamics that are detectable only by their relative motion. Our analytical approach should advance broad understanding of diffusion processes of fundamental relevance.
Conserved linear dynamics of single-molecule Brownian motion
Serag, Maged F.
2017-06-06
Macromolecular diffusion in homogeneous fluid at length scales greater than the size of the molecule is regarded as a random process. The mean-squared displacement (MSD) of molecules in this regime increases linearly with time. Here we show that non-random motion of DNA molecules in this regime that is undetectable by the MSD analysis can be quantified by characterizing the molecular motion relative to a latticed frame of reference. Our lattice occupancy analysis reveals unexpected sub-modes of motion of DNA that deviate from expected random motion in the linear, diffusive regime. We demonstrate that a subtle interplay between these sub-modes causes the overall diffusive motion of DNA to appear to conform to the linear regime. Our results show that apparently random motion of macromolecules could be governed by non-random dynamics that are detectable only by their relative motion. Our analytical approach should advance broad understanding of diffusion processes of fundamental relevance.
Unstable volatility functions: the break preserving local linear estimator
DEFF Research Database (Denmark)
Casas, Isabel; Gijbels, Irene
The objective of this paper is to introduce the break preserving local linear (BPLL) estimator for the estimation of unstable volatility functions. Breaks in the structure of the conditional mean and/or the volatility functions are common in Finance. Markov switching models (Hamilton, 1989......) and threshold models (Lin and Terasvirta, 1994) are amongst the most popular models to describe the behaviour of data with structural breaks. The local linear (LL) estimator is not consistent at points where the volatility function has a break and it may even report negative values for finite samples...
Geometrically non linear analysis of functionally graded material ...
African Journals Online (AJOL)
Geometrically non linear analysis of functionally graded material plates using higher order theory. ... International Journal of Engineering, Science and Technology. Journal Home ... The analysis of functionally graded material (FGM) plates with material variation parameter (n), boundary conditions, aspect ratios and side to ...
Developing optimal non-linear scoring function for protein design.
Hu, Changyu; Li, Xiang; Liang, Jie
2004-11-22
Motivation. Protein design aims to identify sequences compatible with a given protein fold but incompatible to any alternative folds. To select the correct sequences and to guide the search process, a design scoring function is critically important. Such a scoring function should be able to characterize the global fitness landscape of many proteins simultaneously. To find optimal design scoring functions, we introduce two geometric views and propose a formulation using a mixture of non-linear Gaussian kernel functions. We aim to solve a simplified protein sequence design problem. Our goal is to distinguish each native sequence for a major portion of representative protein structures from a large number of alternative decoy sequences, each a fragment from proteins of different folds. Our scoring function discriminates perfectly a set of 440 native proteins from 14 million sequence decoys. We show that no linear scoring function can succeed in this task. In a blind test of unrelated proteins, our scoring function misclassfies only 13 native proteins out of 194. This compares favorably with about three-four times more misclassifications when optimal linear functions reported in the literature are used. We also discuss how to develop protein folding scoring function.
Directory of Open Access Journals (Sweden)
ANTIC, D.
2013-11-01
Full Text Available The constraints on the quantizer model are usually related to how complex the model can be designed and implemented. For the given bit rate, it is desirable to provide the highest possible signal to quantization noise ratio (SQNR with reasonable complexity of a quantizer model. In order to avoid the influence of compressor function nonlinearity and the difficulties appearing in implementing and designing, especially in the Gaussian probability density function case, in this paper we linearize the optimal compressor function within the segments. We take advantage of piecewise linearization of the optimal compressor function, as a convenient solution for less complex designing compared to the asymptotically optimal compandor, and we provide performances close to the ones of the asymptotically optimal compandor. This makes our model useful in applications where the design and implementation complexity is a decisive factor. We propose a piecewise linear compandor (PLC with an equal number of reproduction levels per nonuniformly spaced segments, where the segment thresholds are allotted to the equidistant optimal compressor function values. We study how the number of segments affects SQNR of the PLC. Features of the proposed PLC indicate its theoretical and practical significance in quantization of Gaussian source signals.
The Hardness of Finding Linear Ranking Functions for Lasso Programs
Directory of Open Access Journals (Sweden)
Amir M. Ben-Amram
2014-08-01
Full Text Available Finding whether a linear-constraint loop has a linear ranking function is an important key to understanding the loop behavior, proving its termination and establishing iteration bounds. If no preconditions are provided, the decision problem is known to be in coNP when variables range over the integers and in PTIME for the rational numbers, or real numbers. Here we show that deciding whether a linear-constraint loop with a precondition, specifically with partially-specified input, has a linear ranking function is EXPSPACE-hard over the integers, and PSPACE-hard over the rationals. The precise complexity of these decision problems is yet unknown. The EXPSPACE lower bound is derived from the reachability problem for Petri nets (equivalently, Vector Addition Systems, and possibly indicates an even stronger lower bound (subject to open problems in VAS theory. The lower bound for the rationals follows from a novel simulation of Boolean programs. Lower bounds are also given for the problem of deciding if a linear ranking-function supported by a particular form of inductive invariant exists. For loops over integers, the problem is PSPACE-hard for convex polyhedral invariants and EXPSPACE-hard for downward-closed sets of natural numbers as invariants.
Linear circuit transfer functions an introduction to fast analytical techniques
Basso, Christophe P
2016-01-01
Linear Circuit Transfer Functions: An introduction to Fast Analytical Techniques teaches readers how to determine transfer functions of linear passive and active circuits by applying Fast Analytical Circuits Techniques. Building on their existing knowledge of classical loop/nodal analysis, the book improves and expands their skills to unveil transfer functions in a swift and efficient manner. Starting with simple examples, the author explains step-by-step how expressing circuits time constants in different configurations leads to writing transfer functions in a compact and insightful way. By learning how to organize numerators and denominators in the fastest possible way, readers will speed-up analysis and predict the frequency resp nse of simple to complex circuits. In some cases, they will be able to derive the final expression by inspection, without writing a line of algebra. Key features: * Emphasizes analysis through employing time constant-based methods discussed in other text books but not widely us...
A new chaotic Hopfield network with piecewise linear activation function
International Nuclear Information System (INIS)
Peng-Sheng, Zheng; Wan-Sheng, Tang; Jian-Xiong, Zhang
2010-01-01
This paper presents a new chaotic Hopfield network with a piecewise linear activation function. The dynamic of the network is studied by virtue of the bifurcation diagram, Lyapunov exponents spectrum and power spectrum. Numerical simulations show that the network displays chaotic behaviours for some well selected parameters
Geometrically non linear analysis of functionally graded material ...
African Journals Online (AJOL)
user
when compared to the other engineering materials (Akhavan and Hamed, 2010). However, FGM plates under mechanical loading may undergo elastic instability. Hence, the non-linear behavior of functionally graded plates has to be understood for their optimum design. Reddy (2000) proposed the theoretical formulation ...
Coupled cluster approach to the single-particle Green's function
International Nuclear Information System (INIS)
Nooijen, M.; Snijders, J.G.
1992-01-01
Diagrammatic and coupled cluster techniques are used to develop an approach to the single-particle Green's function G which concentrates on G directly rather than first approximating the irreducible self-energy and then solving Dyson's equation. As a consequence the ionization and attachment parts of the Green's function satisfy completely decoupled sets of equations. The proposed coupled cluster Green's function method (CCGF) is intimately connected to both coupled cluster linear response theory (CCLRT) and the normal coupled cluster method (NCCM). These relations are discussed in detail
Linearly Polarized, Single-Mode Spontaneous Emission in a Photonic Nanowire
DEFF Research Database (Denmark)
Munsch, Mathieu; Claudon, Julien; Bleuse, Joël
2012-01-01
We introduce dielectric elliptical photonic nanowires to funnel efficiently the spontaneous emission of an embedded emitter into a single optical mode. Inside a wire with a moderate lateral aspect ratio, the electromagnetic environment is largely dominated by a single guided mode, with a linear...
Stimulus-response functions of single avian olfactory bulb neurones.
McKeegan, Dorothy E F; Demmers, Theodorus G M; Wathes, Christopher M; Jones, R Bryan; Gentle, Michael J
2002-10-25
This study investigated olfactory processing in a functional context by examining the responses of single avian olfactory bulb neurones to two biologically important gases over relevant concentration ranges. Recordings of extracellular spike activity were made from 80 single units in the left olfactory bulb of 11 anaesthetised, freely breathing adult hens (Gallus domesticus). The units were spontaneously active, exhibiting widely variable firing rates (0.07-47.28 spikes/s) and variable temporal firing patterns. Single units were tested for their response to an ascending concentration series of either ammonia (2.5-100 ppm) or hydrogen sulphide (1-50 ppm), delivered directly to the olfactory epithelium. Stimulation with a calibrated gas delivery system resulted in modification of spontaneous activity causing either inhibition (47% of units) or excitation (53%) of firing. For ammonia, 20 of the 35 units tested exhibited a response, while for hydrogen sulphide, 25 of the 45 units tested were responsive. Approximate response thresholds for ammonia (median threshold 3.75 ppm (range 2.5-60 ppm, n=20)) and hydrogen sulphide (median threshold 1 ppm (range 1-10 ppm, n=25)) were determined with most units exhibiting thresholds near the lower end of these ranges. Stimulus response curves were constructed for 23 units; 16 (the most complete) were subjected to a linear regression analysis to determine whether they were best fitted by a linear, log or power function. No single function provided the best fit for all the curves (seven were linear, eight were log, one was power). These findings show that avian units respond to changes in stimulus concentration in a manner generally consistent with reported responses in mammalian olfactory bulb neurones. However, this study illustrates a level of fine-tuning to small step changes in concentration (<5 ppm) not previously demonstrated in vertebrate single olfactory bulb neurones.
Optimal Piecewise Linear Basis Functions in Two Dimensions
Energy Technology Data Exchange (ETDEWEB)
Brooks III, E D; Szoke, A
2009-01-26
We use a variational approach to optimize the center point coefficients associated with the piecewise linear basis functions introduced by Stone and Adams [1], for polygonal zones in two Cartesian dimensions. Our strategy provides optimal center point coefficients, as a function of the location of the center point, by minimizing the error induced when the basis function interpolation is used for the solution of the time independent diffusion equation within the polygonal zone. By using optimal center point coefficients, one expects to minimize the errors that occur when these basis functions are used to discretize diffusion equations, or transport equations in optically thick zones (where they approach the solution of the diffusion equation). Our optimal center point coefficients satisfy the requirements placed upon the basis functions for any location of the center point. We also find that the location of the center point can be optimized, but this requires numerical calculations. Curiously, the optimum center point location is independent of the values of the dependent variable on the corners only for quadrilaterals.
Filtering Non-Linear Transfer Functions on Surfaces.
Heitz, Eric; Nowrouzezahrai, Derek; Poulin, Pierre; Neyret, Fabrice
2014-07-01
Applying non-linear transfer functions and look-up tables to procedural functions (such as noise), surface attributes, or even surface geometry are common strategies used to enhance visual detail. Their simplicity and ability to mimic a wide range of realistic appearances have led to their adoption in many rendering problems. As with any textured or geometric detail, proper filtering is needed to reduce aliasing when viewed across a range of distances, but accurate and efficient transfer function filtering remains an open problem for several reasons: transfer functions are complex and non-linear, especially when mapped through procedural noise and/or geometry-dependent functions, and the effects of perspective and masking further complicate the filtering over a pixel's footprint. We accurately solve this problem by computing and sampling from specialized filtering distributions on the fly, yielding very fast performance. We investigate the case where the transfer function to filter is a color map applied to (macroscale) surface textures (like noise), as well as color maps applied according to (microscale) geometric details. We introduce a novel representation of a (potentially modulated) color map's distribution over pixel footprints using Gaussian statistics and, in the more complex case of high-resolution color mapped microsurface details, our filtering is view- and light-dependent, and capable of correctly handling masking and occlusion effects. Our approach can be generalized to filter other physical-based rendering quantities. We propose an application to shading with irradiance environment maps over large terrains. Our framework is also compatible with the case of transfer functions used to warp surface geometry, as long as the transformations can be represented with Gaussian statistics, leading to proper view- and light-dependent filtering results. Our results match ground truth and our solution is well suited to real-time applications, requires only a few
Single Image Super-Resolution by Non-Linear Sparse Representation and Support Vector Regression
Directory of Open Access Journals (Sweden)
Yungang Zhang
2017-02-01
Full Text Available Sparse representations are widely used tools in image super-resolution (SR tasks. In the sparsity-based SR methods, linear sparse representations are often used for image description. However, the non-linear data distributions in images might not be well represented by linear sparse models. Moreover, many sparsity-based SR methods require the image patch self-similarity assumption; however, the assumption may not always hold. In this paper, we propose a novel method for single image super-resolution (SISR. Unlike most prior sparsity-based SR methods, the proposed method uses non-linear sparse representation to enhance the description of the non-linear information in images, and the proposed framework does not need to assume the self-similarity of image patches. Based on the minimum reconstruction errors, support vector regression (SVR is applied for predicting the SR image. The proposed method was evaluated on various benchmark images, and promising results were obtained.
International Nuclear Information System (INIS)
Anh, N.D.; Hieu, N.N.; Chung, P.N.; Anh, N.T.
2016-01-01
Highlights: • Linearization criteria are presented for a single-node model of satellite thermal. • A nonlinear algebraic system for linearization coefficients is obtained. • The temperature evolutions obtained from different methods are explored. • The temperature mean and amplitudes versus the heat capacity are discussed. • The dual criterion approach yields smaller errors than other approximate methods. - Abstract: In this paper, the method of equivalent linearization is extended to the thermal analysis of satellite using both conventional and dual criteria of linearization. These criteria are applied to a differential nonlinear equation of single-node model of the heat transfer of a small satellite in the Low Earth Orbit. A system of nonlinear algebraic equations for linearization coefficients is obtained in the closed form and then solved by the iteration method. The temperature evolution, average values and amplitudes versus the heat capacity obtained by various approaches including Runge–Kutta algorithm, conventional and dual criteria of equivalent linearization, and Grande's approach are compared together. Numerical results reveal that temperature responses obtained from the method of linearization and Grande's approach are quite close to those obtained from the Runge–Kutta method. The dual criterion yields smaller errors than those of the remaining methods when the nonlinearity of the system increases, namely, when the heat capacity varies in the range [1.0, 3.0] × 10 4 J K −1 .
Li, Dong; Wen, Yinghong; Li, Weili; Fang, Jin; Cao, Junci; Zhang, Xiaochen; Lv, Gang
2017-03-01
In the paper, the numerical method calculating asymmetric primary slot leakage inductances of Single-sided High-Temperature Superconducting (HTS) Linear Induction Motor (HTS LIM) is presented. The mathematical and geometric models of three-dimensional nonlinear transient electromagnetic field are established and the boundary conditions are also given. The established model is solved by time-stepping Finite Element Method (FEM). Then, the three-phase asymmetric primary slot leakage inductances under different operation conditions are calculated by using the obtained electromagnetic field distribution. The influences of the special effects such as longitudinal end effects, transversal edge effects, etc. on the primary slot leakage inductance are investigated. The presented numerical method is validated by experiments carried out on a 3.5 kW prototype with copper wires which has the same structures with the HTS LIM.
Cheong, Yuk Fai; Kamata, Akihito
2013-01-01
In this article, we discuss and illustrate two centering and anchoring options available in differential item functioning (DIF) detection studies based on the hierarchical generalized linear and generalized linear mixed modeling frameworks. We compared and contrasted the assumptions of the two options, and examined the properties of their DIF…
Single-tube linear DNA amplification (LinDA) for robust ChIP-seq
Shankaranarayanan, P.; Mendoza-Parra, M.A.; Walia, M.; Wang, L.; Li, N.; Trindade, L.M.; Gronemeyer, H.
2011-01-01
Genome-wide profiling of transcription factors based on massive parallel sequencing of immunoprecipitated chromatin (ChIP-seq) requires nanogram amounts of DNA. Here we describe a high-fidelity, single-tube linear DNA amplification method (LinDA) for ChIP-seq and reChIP-seq with picogram DNA amounts
A Linear Tetranuclear Dysprosium(III) Compound Showing Single-Molecule Magnet Behavior
Energy Technology Data Exchange (ETDEWEB)
Ke, Hongshan; Xu, Gong Feng; Guo, Yun-Nan; Gamez, Patrick; Beavers, Christine M; Teat, Simon J; Tang, Jinkui
2010-04-20
Although magnetic measurements reveal a single-relaxation time for a linear tetranuclear Dy(III) compound, the wide distribution of the relaxation time observed clearly suggests the presence of two slightly different anisotropic centres, therefore opening new avenues for investigating the relaxation dynamics of lanthanide aggregates.
Single-nary philosophy for non-linear study of mechanics of materials
International Nuclear Information System (INIS)
Tran, C.
2005-01-01
Non-linear study of mechanics of materials is formulated in this paper as a problem of meta-intelligent system analysis. Non-linearity will be singled out as an important concept for understanding of high-order complex systems. Through single-nary thinking, which will be represented in this work, we introduce a modification of Aristotelian philosophy using modal logic and multi-valued logic (these logics we call 'high-order' logic). Next, non-linear cause - effect relations are expressed through non-additive measures and multiple-information aggregation principles based on fuzzy integration. The study of real time behaviors, required experiences and intuition, will be realized using truth measures (non-additive measures) and a procedure for information processing in intelligence levels. (author)
How linear features alter predator movement and the functional response.
McKenzie, Hannah W
2012-01-18
In areas of oil and gas exploration, seismic lines have been reported to alter the movement patterns of wolves (Canis lupus). We developed a mechanistic first passage time model, based on an anisotropic elliptic partial differential equation, and used this to explore how wolf movement responses to seismic lines influence the encounter rate of the wolves with their prey. The model was parametrized using 5 min GPS location data. These data showed that wolves travelled faster on seismic lines and had a higher probability of staying on a seismic line once they were on it. We simulated wolf movement on a range of seismic line densities and drew implications for the rate of predator-prey interactions as described by the functional response. The functional response exhibited a more than linear increase with respect to prey density (type III) as well as interactions with seismic line density. Encounter rates were significantly higher in landscapes with high seismic line density and were most pronounced at low prey densities. This suggests that prey at low population densities are at higher risk in environments with a high seismic line density unless they learn to avoid them.
Simulation study on single event burnout in linear doping buffer layer engineered power VDMOSFET
International Nuclear Information System (INIS)
Jia Yunpeng; Su Hongyuan; Hu Dongqing; Wu Yu; Jin Rui
2016-01-01
The addition of a buffer layer can improve the device's secondary breakdown voltage, thus, improving the single event burnout (SEB) threshold voltage. In this paper, an N type linear doping buffer layer is proposed. According to quasi-stationary avalanche simulation and heavy ion beam simulation, the results show that an optimized linear doping buffer layer is critical. As SEB is induced by heavy ions impacting, the electric field of an optimized linear doping buffer device is much lower than that with an optimized constant doping buffer layer at a given buffer layer thickness and the same biasing voltages. Secondary breakdown voltage and the parasitic bipolar turn-on current are much higher than those with the optimized constant doping buffer layer. So the linear buffer layer is more advantageous to improving the device's SEB performance. (paper)
Timelike single-logarithm-resummed splitting functions
International Nuclear Information System (INIS)
Albino, S.; Bolzoni, P.; Kniehl, B.A.; Kotikov, A.V.; Joint Inst. of Nuclear Research, Moscow
2011-08-01
We calculate the single logarithmic contributions to the quark singlet and gluon matrix of timelike splitting functions at all orders in the modified minimal-subtraction (MS) scheme. We fix two of the degrees of freedom of this matrix from the analogous results in the massive-gluon regularization scheme by using the relation between that scheme and the MS scheme. We determine this scheme transformation from the double logarithmic contributions to the timelike splitting functions and the coefficient functions of inclusive particle production in e + e - annihilation now available in both schemes. The remaining two degrees of freedom are fixed by reasonable physical assumptions. The results agree with the fixed-order results at next-to-next-to-leading order in the literature. (orig.)
Linearly frequency-modulated pulsed single-frequency fiber laser at 1083 nm.
Zhang, Yuanfei; Yang, Changsheng; Li, Can; Feng, Zhouming; Xu, Shanhui; Deng, Huaqiu; Yang, Zhongmin
2016-02-22
A linearly frequency-modulated, actively Q-switched, single-frequency ring fiber laser based on injection seeding from an ultra-short cavity is demonstrated at 1083 nm. A piezoelectric transducer is employed to obtain linearly frequency-modulating performance and over 1.05 GHz frequency-tuning range is achieved with a modulating frequency reaching tens of kilohertz. A maximum peak power of the stable output pulse is over 3.83 W during frequency-modulating process. This type of pulsed fiber laser provides a promising candidate for coherent LIDAR in the measurement of thermosphere.
Estimation of Multiple Point Sources for Linear Fractional Order Systems Using Modulating Functions
Belkhatir, Zehor
2017-06-28
This paper proposes an estimation algorithm for the characterization of multiple point inputs for linear fractional order systems. First, using polynomial modulating functions method and a suitable change of variables the problem of estimating the locations and the amplitudes of a multi-pointwise input is decoupled into two algebraic systems of equations. The first system is nonlinear and solves for the time locations iteratively, whereas the second system is linear and solves for the input’s amplitudes. Second, closed form formulas for both the time location and the amplitude are provided in the particular case of single point input. Finally, numerical examples are given to illustrate the performance of the proposed technique in both noise-free and noisy cases. The joint estimation of pointwise input and fractional differentiation orders is also presented. Furthermore, a discussion on the performance of the proposed algorithm is provided.
Absorption line profiles in a moving atmosphere - A single scattering linear perturbation theory
Hays, P. B.; Abreu, V. J.
1989-01-01
An integral equation is derived which linearly relates Doppler perturbations in the spectrum of atmospheric absorption features to the wind system which creates them. The perturbation theory is developed using a single scattering model, which is validated against a multiple scattering calculation. The nature and basic properties of the kernels in the integral equation are examined. It is concluded that the kernels are well behaved and that wind velocity profiles can be recovered using standard inversion techniques.
Linear optical implementation of perfect discrimination between single-bit unitary operations
International Nuclear Information System (INIS)
Zhang Pei; Peng Liang; Wang Zhiwei; Ren Xifeng; Liu Biheng; Huang Yunfeng; Guo Guangcan
2008-01-01
Discrimination of unitary operations is a fundamental task of quantum information. Assisted by linear optical elements, we experimentally demonstrate perfect discrimination between single-bit unitary operations using the sequential scheme which is proved by Duan et al (Phys. Rev. Lett. 2007 98 100503). We also make a comparison with another perfect discrimination scheme called the parallel scheme. The complexity and resource consumed are analysed
Acute single channel EEG predictors of cognitive function after stroke.
Directory of Open Access Journals (Sweden)
Anna Aminov
Full Text Available Early and accurate identification of factors that predict post-stroke cognitive outcome is important to set realistic targets for rehabilitation and to guide patients and their families accordingly. However, behavioral measures of cognition are difficult to obtain in the acute phase of recovery due to clinical factors (e.g. fatigue and functional barriers (e.g. language deficits. The aim of the current study was to test whether single channel wireless EEG data obtained acutely following stroke could predict longer-term cognitive function.Resting state Relative Power (RP of delta, theta, alpha, beta, delta/alpha ratio (DAR, and delta/theta ratio (DTR were obtained from a single electrode over FP1 in 24 participants within 72 hours of a first-ever stroke. The Montreal Cognitive Assessment (MoCA was administered at 90-days post-stroke. Correlation and regression analyses were completed to identify relationships between 90-day cognitive function and electrophysiological data, neurological status, and demographic characteristics at admission.Four acute qEEG indices demonstrated moderate to high correlations with 90-day MoCA scores: DTR (r = -0.57, p = 0.01, RP theta (r = 0.50, p = 0.01, RP delta (r = -0.47, p = 0.02, and DAR (r = -0.45, p = 0.03. Acute DTR (b = -0.36, p < 0.05 and stroke severity on admission (b = -0.63, p < 0.01 were the best linear combination of predictors of MoCA scores 90-days post-stroke, accounting for 75% of variance.Data generated by a single pre-frontal electrode support the prognostic value of acute DAR, and identify DTR as a potential marker of post-stroke cognitive outcome. Use of single channel recording in an acute clinical setting may provide an efficient and valid predictor of cognitive function after stroke.
Detection of kinetic change points in piece-wise linear single molecule motion
Hill, Flynn R.; van Oijen, Antoine M.; Duderstadt, Karl E.
2018-03-01
Single-molecule approaches present a powerful way to obtain detailed kinetic information at the molecular level. However, the identification of small rate changes is often hindered by the considerable noise present in such single-molecule kinetic data. We present a general method to detect such kinetic change points in trajectories of motion of processive single molecules having Gaussian noise, with a minimum number of parameters and without the need of an assumed kinetic model beyond piece-wise linearity of motion. Kinetic change points are detected using a likelihood ratio test in which the probability of no change is compared to the probability of a change occurring, given the experimental noise. A predetermined confidence interval minimizes the occurrence of false detections. Applying the method recursively to all sub-regions of a single molecule trajectory ensures that all kinetic change points are located. The algorithm presented allows rigorous and quantitative determination of kinetic change points in noisy single molecule observations without the need for filtering or binning, which reduce temporal resolution and obscure dynamics. The statistical framework for the approach and implementation details are discussed. The detection power of the algorithm is assessed using simulations with both single kinetic changes and multiple kinetic changes that typically arise in observations of single-molecule DNA-replication reactions. Implementations of the algorithm are provided in ImageJ plugin format written in Java and in the Julia language for numeric computing, with accompanying Jupyter Notebooks to allow reproduction of the analysis presented here.
Approximation of functions of two variables by certain linear positive ...
Indian Academy of Sciences (India)
Furthermore, we study the convergence of the linear posi- .... Taking (3.1) into account we now give the following Baskakov type theorem (see [2] to ... gives the rate of convergence of the sequence of linear positive operators {L αi ,βj m,n } to f, by means of partial and full modulus of continuity. Theorem 3.3. Let f ∈ C(RA).
Calculation of the exponential function of linear idempotent operators
International Nuclear Information System (INIS)
Chavoya-Aceves, O.; Luna, H.M.
1989-01-01
We give a method to calculate the exponential EXP[A r ] where A is a linear operator which satisfies the reaction A n =I, n is an integer and I is the identity operator. The method is generalised to operators such that A n +1=A and is applied to obtain some Lorentz transformations which generalise the notion of 'boost'. (Author)
No-go theorem for passive single-rail linear optical quantum computing.
Wu, Lian-Ao; Walther, Philip; Lidar, Daniel A
2013-01-01
Photonic quantum systems are among the most promising architectures for quantum computers. It is well known that for dual-rail photons effective non-linearities and near-deterministic non-trivial two-qubit gates can be achieved via the measurement process and by introducing ancillary photons. While in principle this opens a legitimate path to scalable linear optical quantum computing, the technical requirements are still very challenging and thus other optical encodings are being actively investigated. One of the alternatives is to use single-rail encoded photons, where entangled states can be deterministically generated. Here we prove that even for such systems universal optical quantum computing using only passive optical elements such as beam splitters and phase shifters is not possible. This no-go theorem proves that photon bunching cannot be passively suppressed even when extra ancilla modes and arbitrary number of photons are used. Our result provides useful guidance for the design of optical quantum computers.
Linear Regression on Sparse Features for Single-Channel Speech Separation
DEFF Research Database (Denmark)
Schmidt, Mikkel N.; Olsson, Rasmus Kongsgaard
2007-01-01
In this work we address the problem of separating multiple speakers from a single microphone recording. We formulate a linear regression model for estimating each speaker based on features derived from the mixture. The employed feature representation is a sparse, non-negative encoding of the speech...... compared to linear regression on spectral features and compared to separation based directly on the non-negative sparse features....... mixture in terms of pre-learned speaker-dependent dictionaries. Previous work has shown that this feature representation by itself provides some degree of separation. We show that the performance is significantly improved when regression analysis is performed on the sparse, non-negative features, both...
Characterestics of pico-second single bunch at the S-band linear accelerator
International Nuclear Information System (INIS)
Uesaka, Mitsuru; Kozawa, Takahiro; Kobayashi, Toshiaki; Ueda, Toru; Miya, Kenzo
1994-01-01
Measurement of the bunch structure of a pico-second single bunch was performed using a femto-second streak camera at the S-band linear accelerator of the University of Tokyo. The aim of this research is to investigate the feasibility of the generation of a femto-second single bunch at the S-band linac. The details of the bunch structure and energy spectrum of an original single bunch were precisely investigated in several operation modes where the RF phases in accelerating tubes and a prebuncher were varied. The femto-second streak camera was utilized to measure the bunch structure by one shot via Cherenkov radiation emitted by the electrons in the bunch. Next, an experiment for magnetic pulse compression of the original single bunch was carried out. Pulse shapes of the compressed bunchs for different energy modulation were also obtained by measuring Cherenkov radiation by one shot using the femto-second streak camera. Prior to the experiment, numerical tracking analysis to determine operating parameters for the magnetic pulse compression was also done. Measured pulse widths were compared with calculated ones. Finally, a 2 ps (full width at half maximum; FWHM) single bunch with an electric charge of 0.3 nC could be generated by the magnetic pulse compression. ((orig.))
Single-tube linear DNA amplification (LinDA) for robust ChIP-seq.
Shankaranarayanan, Pattabhiraman; Mendoza-Parra, Marco-Antonio; Walia, Mannu; Wang, Li; Li, Ning; Trindade, Luisa M; Gronemeyer, Hinrich
2011-06-05
Genome-wide profiling of transcription factors based on massive parallel sequencing of immunoprecipitated chromatin (ChIP-seq) requires nanogram amounts of DNA. Here we describe a high-fidelity, single-tube linear DNA amplification method (LinDA) for ChIP-seq and reChIP-seq with picogram DNA amounts obtained from a few thousand cells. This amplification technology will facilitate global analyses of transcription-factor binding and chromatin with very small cell populations, such as stem or cancer-initiating cells.
International Nuclear Information System (INIS)
Franco-Pérez, Marco; Ayers, Paul W.; Gázquez, José L.; Vela, Alberto
2015-01-01
We explore the local and nonlocal response functions of the grand canonical potential density functional at nonzero temperature. In analogy to the zero-temperature treatment, local (e.g., the average electron density and the local softness) and nonlocal (e.g., the softness kernel) intrinsic response functions are defined as partial derivatives of the grand canonical potential with respect to its thermodynamic variables (i.e., the chemical potential of the electron reservoir and the external potential generated by the atomic nuclei). To define the local and nonlocal response functions of the electron density (e.g., the Fukui function, the linear density response function, and the dual descriptor), we differentiate with respect to the average electron number and the external potential. The well-known mathematical relationships between the intrinsic response functions and the electron-density responses are generalized to nonzero temperature, and we prove that in the zero-temperature limit, our results recover well-known identities from the density functional theory of chemical reactivity. Specific working equations and numerical results are provided for the 3-state ensemble model
Fuzzy optimization of primal-dual pair using piecewise linear membership functions
Directory of Open Access Journals (Sweden)
Pandey D.
2012-01-01
Full Text Available Present paper improves the model of Bector and Chandra [Fuzzy Sets and Systems, 125 (2002 317-325] on duality in fuzzy linear programming by using non-linear membership functions. Numerical problem discussed by these authors has also been worked out through our non-linear model to demonstrate improved optimality of the results.
On the preservation of single- and multi-bunch emittance in linear accelerators
International Nuclear Information System (INIS)
Drevlak, M.
1995-11-01
This document is concentrated on the investigation of the dynamics of a particle beam in a linear accelerator. We numerically simulate a number of effects and evaluate the severity of their impact on the beam. Furthermore, we examine the applicability of several correction techniques aiming at the suppression or correction of the effects diluting the beam emittance. First, there is the issue of single-bunch dynamics : we see that wake field effects and dispersive errors can cause a significant emittance growth. Secondly, long range dipole wakes and dispersive effects arising from the energy spread between different bunches will cause relative offsets between the individual bunches and likewise result in emittance growth. Finally, we observe interactions between the single-bunch and multi-bunch dynamics in a bunch train, which further aggravate these effects. The corrective measures against emittance growth are first tested with respect to individual effects relating to issues of single- or multi-bunch dynamics. Later, these different correction techniques are joined to one machine tuning procedure that will be applied in order to achieve good emittance preservation for operation of the accelerator with a full beam consisting of the full number of bunches. The performance of this procedure is tested in simulations of the combined single- and multi-bunch dynamics. Finally, tolerances on the machine alignment as well as machine and beam parameters are established. (orig.)
Directory of Open Access Journals (Sweden)
Yunfeng Wu
2014-01-01
Full Text Available This paper presents a novel adaptive linear and normalized combination (ALNC method that can be used to combine the component radial basis function networks (RBFNs to implement better function approximation and regression tasks. The optimization of the fusion weights is obtained by solving a constrained quadratic programming problem. According to the instantaneous errors generated by the component RBFNs, the ALNC is able to perform the selective ensemble of multiple leaners by adaptively adjusting the fusion weights from one instance to another. The results of the experiments on eight synthetic function approximation and six benchmark regression data sets show that the ALNC method can effectively help the ensemble system achieve a higher accuracy (measured in terms of mean-squared error and the better fidelity (characterized by normalized correlation coefficient of approximation, in relation to the popular simple average, weighted average, and the Bagging methods.
International Nuclear Information System (INIS)
BenAbdallah, Abdallah; Hammami, Mohamed Ali; Kallel, Jalel
2009-01-01
In this paper we present some sufficient conditions for the robust stability and stabilization of time invariant uncertain piecewise linear system using homogenous piecewise polynomial Lyapunov function. The proposed conditions are given in terms of linear matrix inequalities which can be numerically solved. An application of the obtained result is given. It consists in resolving the stabilization of piecewise uncertain linear control systems by using a state piecewise linear feedback.
Hu, L; Zhang, Z G; Mouraux, A; Iannetti, G D
2015-05-01
Transient sensory, motor or cognitive event elicit not only phase-locked event-related potentials (ERPs) in the ongoing electroencephalogram (EEG), but also induce non-phase-locked modulations of ongoing EEG oscillations. These modulations can be detected when single-trial waveforms are analysed in the time-frequency domain, and consist in stimulus-induced decreases (event-related desynchronization, ERD) or increases (event-related synchronization, ERS) of synchrony in the activity of the underlying neuronal populations. ERD and ERS reflect changes in the parameters that control oscillations in neuronal networks and, depending on the frequency at which they occur, represent neuronal mechanisms involved in cortical activation, inhibition and binding. ERD and ERS are commonly estimated by averaging the time-frequency decomposition of single trials. However, their trial-to-trial variability that can reflect physiologically-important information is lost by across-trial averaging. Here, we aim to (1) develop novel approaches to explore single-trial parameters (including latency, frequency and magnitude) of ERP/ERD/ERS; (2) disclose the relationship between estimated single-trial parameters and other experimental factors (e.g., perceived intensity). We found that (1) stimulus-elicited ERP/ERD/ERS can be correctly separated using principal component analysis (PCA) decomposition with Varimax rotation on the single-trial time-frequency distributions; (2) time-frequency multiple linear regression with dispersion term (TF-MLRd) enhances the signal-to-noise ratio of ERP/ERD/ERS in single trials, and provides an unbiased estimation of their latency, frequency, and magnitude at single-trial level; (3) these estimates can be meaningfully correlated with each other and with other experimental factors at single-trial level (e.g., perceived stimulus intensity and ERP magnitude). The methods described in this article allow exploring fully non-phase-locked stimulus-induced cortical
From Protein Sequence to Protein Function via Multi-Label Linear Discriminant Analysis.
Wang, Hua; Yan, Lin; Huang, Heng; Ding, Chris
2017-01-01
Sequence describes the primary structure of a protein, which contains important structural, characteristic, and genetic information and thereby motivates many sequence-based computational approaches to infer protein function. Among them, feature-base approaches attract increased attention because they make prediction from a set of transformed and more biologically meaningful sequence features. However, original features extracted from sequence are usually of high dimensionality and often compromised by irrelevant patterns, therefore dimension reduction is necessary prior to classification for efficient and effective protein function prediction. A protein usually performs several different functions within an organism, which makes protein function prediction a multi-label classification problem. In machine learning, multi-label classification deals with problems where each object may belong to more than one class. As a well-known feature reduction method, linear discriminant analysis (LDA) has been successfully applied in many practical applications. It, however, by nature is designed for single-label classification, in which each object can belong to exactly one class. Because directly applying LDA in multi-label classification causes ambiguity when computing scatters matrices, we apply a new Multi-label Linear Discriminant Analysis (MLDA) approach to address this problem and meanwhile preserve powerful classification capability inherited from classical LDA. We further extend MLDA by l 1 -normalization to overcome the problem of over-counting data points with multiple labels. In addition, we incorporate biological network data using Laplacian embedding into our method, and assess the reliability of predicted putative functions. Extensive empirical evaluations demonstrate promising results of our methods.
Functionalized linear poly(amidoamine)s are efficient vectors for intracellular protein delivery
Coué, G.M.J.P.C.; Engbersen, Johannes F.J.
2011-01-01
An effective intracellular protein delivery system was developed based on functionalized linear poly(amidoamine)s (PAAs) that form self-assembled cationic nanocomplexes with oppositely charged proteins. Three differently functionalized PAAs were synthesized, two of these having repetitive disulfide
Balestre, M; Von Pinho, R G; Souza, J C
2010-06-11
We evaluated the potential of the best linear unbiased predictor (BLUP) along with the relationship coefficient for predicting the performance of untested maize single-cross hybrids. Ninety S(0:2) progenies arising from three single-cross hybrids were used. The 90 progenies were genotyped with 25 microsatellite markers, with nine markers linked to quantitative trait loci for grain yield. Based on genetic similarities, 17 partial inbred lines were selected and crossed in a partial diallel design. Similarity and relationship coefficients were used to construct the additive and dominance genetic matrices; along with BLUP, they provided predictions for untested single-crosses. Five degrees of imbalance were simulated (5, 10, 20, 30, and 40 hybrids). The correlation values between the predicted genotypic values and the observed phenotypic means varied from 0.55 to 0.70, depending on the degree of imbalance. A similar result was observed for the specific combining ability predictions; they varied from 0.61 to 0.70. It was also found that the relationship coefficient based on BLUP provided more accurate predictions than similarity-in-state predictions. We conclude that BLUP methodology is a viable alternative for the prediction of untested crosses in early progenies.
Partially linear varying coefficient models stratified by a functional covariate
Maity, Arnab
2012-10-01
We consider the problem of estimation in semiparametric varying coefficient models where the covariate modifying the varying coefficients is functional and is modeled nonparametrically. We develop a kernel-based estimator of the nonparametric component and a profiling estimator of the parametric component of the model and derive their asymptotic properties. Specifically, we show the consistency of the nonparametric functional estimates and derive the asymptotic expansion of the estimates of the parametric component. We illustrate the performance of our methodology using a simulation study and a real data application.
Pleiotropy analysis of quantitative traits at gene level by multivariate functional linear models.
Wang, Yifan; Liu, Aiyi; Mills, James L; Boehnke, Michael; Wilson, Alexander F; Bailey-Wilson, Joan E; Xiong, Momiao; Wu, Colin O; Fan, Ruzong
2015-05-01
In genetics, pleiotropy describes the genetic effect of a single gene on multiple phenotypic traits. A common approach is to analyze the phenotypic traits separately using univariate analyses and combine the test results through multiple comparisons. This approach may lead to low power. Multivariate functional linear models are developed to connect genetic variant data to multiple quantitative traits adjusting for covariates for a unified analysis. Three types of approximate F-distribution tests based on Pillai-Bartlett trace, Hotelling-Lawley trace, and Wilks's Lambda are introduced to test for association between multiple quantitative traits and multiple genetic variants in one genetic region. The approximate F-distribution tests provide much more significant results than those of F-tests of univariate analysis and optimal sequence kernel association test (SKAT-O). Extensive simulations were performed to evaluate the false positive rates and power performance of the proposed models and tests. We show that the approximate F-distribution tests control the type I error rates very well. Overall, simultaneous analysis of multiple traits can increase power performance compared to an individual test of each trait. The proposed methods were applied to analyze (1) four lipid traits in eight European cohorts, and (2) three biochemical traits in the Trinity Students Study. The approximate F-distribution tests provide much more significant results than those of F-tests of univariate analysis and SKAT-O for the three biochemical traits. The approximate F-distribution tests of the proposed functional linear models are more sensitive than those of the traditional multivariate linear models that in turn are more sensitive than SKAT-O in the univariate case. The analysis of the four lipid traits and the three biochemical traits detects more association than SKAT-O in the univariate case. © 2015 WILEY PERIODICALS, INC.
Slowly growing solutions of singular linear functional differential systems
Czech Academy of Sciences Publication Activity Database
Pylypenko, V.; Rontó, András
2012-01-01
Roč. 285, 5-6 (2012), s. 727-743 ISSN 0025-584X Institutional support: RVO:67985840 Keywords : functional differential equation * singular Cauchy problem * slowly growing solution Subject RIV: BA - General Mathematics Impact factor: 0.576, year: 2012 http://onlinelibrary.wiley.com/doi/10.1002/ mana .201000014/abstract
Linear measure functional differential equations with infinite delay
Czech Academy of Sciences Publication Activity Database
Monteiro, Giselle Antunes; Slavík, A.
2014-01-01
Roč. 287, 11-12 (2014), s. 1363-1382 ISSN 0025-584X Institutional support: RVO:67985840 Keywords : measure functional differential equations * generalized ordinary differential equations * Kurzweil-Stieltjes integral Subject RIV: BA - General Mathematics Impact factor: 0.683, year: 2014 http://onlinelibrary.wiley.com/doi/10.1002/mana.201300048/abstract
Processes and Reasoning in Representations of Linear Functions
Adu-Gyamfi, Kwaku; Bossé, Michael J.
2014-01-01
This study examined student actions, interpretations, and language in respect to questions raised regarding tabular, graphical, and algebraic representations in the context of functions. The purpose was to investigate students' interpretations and specific ways of working within table, graph, and the algebraic on notions fundamental to a…
Cyclization enhances function of linear anti-arthritic peptides.
Ali, Marina; Amon, Michael; Bender, Vera; Bolte, Andrea; Separovic, Frances; Benson, Heather; Manolios, Nicholas
2014-01-01
This study describes the biophysical and immunomodulatory features of a cyclic peptide termed C1 which consists of alternating d-, l-amino acids and is capable of inhibiting IL-2 production in vitro and reducing the induction and extent of T-cell mediated inflammation in animal models. Solid-state nuclear magnetic resonance demonstrates that the peptide orders the lipid bilayer, suggesting a transmembrane orientation, and this is supported by surface plasmon resonance indicating strong binding affinity of C1 to model membranes. In vitro cell viability and proliferation assays show that C1 does not disrupt the integrity of cell surface membranes. Permeation studies of C1 and analogs across human epidermis cells show that the stability and skin permeability are enhanced by cyclization. Treatment with C1 in an asthma and in an arthritis animal model resulted in a suppressed immune response. Cyclization may be a useful means of enhancing biological linear peptide activity and improving delivery. © 2013. Published by Elsevier Inc. All rights reserved.
Generalized partially linear single-index model for zero-inflated count data.
Wang, Xiaoguang; Zhang, Jun; Yu, Liang; Yin, Guosheng
2015-02-28
Count data often arise in biomedical studies, while there could be a special feature with excessive zeros in the observed counts. The zero-inflated Poisson model provides a natural approach to accounting for the excessive zero counts. In the semiparametric framework, we propose a generalized partially linear single-index model for the mean of the Poisson component, the probability of zero, or both. We develop the estimation and inference procedure via a profile maximum likelihood method. Under some mild conditions, we establish the asymptotic properties of the profile likelihood estimators. The finite sample performance of the proposed method is demonstrated by simulation studies, and the new model is illustrated with a medical care dataset. Copyright © 2014 John Wiley & Sons, Ltd.
A high-power linear ultrasonic motor using longitudinal vibration transducers with single foot.
Liu, Yingxiang; Chen, Weishan; Liu, Junkao; Shi, Shengjun
2010-08-01
A high-power linear ultrasonic motor using longitudinal vibration transducers with single foot was proposed in this paper. The stator of proposed motor contains a horizontal transducer and a vertical transducer. Longitudinal vibrations are superimposed in the stator and generate an elliptical trajectory at the driving foot. The sensitivity analysis of structural parameters to the resonance frequencies of two working modes of the stator was performed using the finite element method. The resonance frequencies of two working modes were degenerated by adjusting the structural parameters. The vibration characteristics of stator were studied and discussed. A prototype motor was fabricated and measured. Typical output of the prototype is a no-load speed of 1160 mm/s and maximum thrust force of 20 N at a voltage of 200 V(rms).
On MV-algebras of non-linear functions
Directory of Open Access Journals (Sweden)
Antonio Di Nola
2017-01-01
Full Text Available In this paper, the main results are:a study of the finitely generated MV-algebras of continuous functions from the n-th power of the unit real interval I to I;a study of Hopfian MV-algebras; anda category-theoretic study of the map sending an MV-algebra as above to the range of its generators (up to a suitable form of homeomorphism.
Tape edge study in a linear tape drive with single-flanged guides
Energy Technology Data Exchange (ETDEWEB)
Goldade, A.V.; Bhushan, Bharat E-mail: bhushan.2@osu.edu
2004-05-01
Improved tape guiding and tape dimensional stability are essential for magnetic tape linear recoding formats to take advantage of vastly increased track density and thereby achieve higher storage capacities. Tape guiding is dependent on numerous parameters, such as type of the guides and tape path geometry, quality of virgin tape edge, drive operating parameters (e.g., tape speed and tape tension), mechanical properties of the tape, and tape geometry (e.g., cupping and curvature). The objective of the present study is to evaluate guiding and tribological performance of single-flanged guides with porous air bearings in a linear tape drive. A comparison of guiding performance of the dual flanged stationary guides and single-flanged guides with porous air bearings is performed. The effect of tape path geometry, drive operating conditions (speed and tension) and tape edge quality of factory-slit tapes on tape guiding are evaluated during short-term tests. A lateral force measurement technique is used to measure the force exerted by the tape edge on the guide flange. A technique for the lateral tape motion measurement is used to study the effect of continuous sliding on tape guiding. Wear tests up to 5000 cycles are conducted and coefficient of friction and lateral tape motion are monitored to study the effect of drive operating conditions (speed and tension), edge quality of factory-slit tapes and tape thickness on tape guiding. Optical microscopy, atomic force microscopy and scanning electron microscopy are employed to study and quantify the quality of tape edge.
Tape edge study in a linear tape drive with single-flanged guides
International Nuclear Information System (INIS)
Goldade, A.V.; Bhushan, Bharat
2004-01-01
Improved tape guiding and tape dimensional stability are essential for magnetic tape linear recoding formats to take advantage of vastly increased track density and thereby achieve higher storage capacities. Tape guiding is dependent on numerous parameters, such as type of the guides and tape path geometry, quality of virgin tape edge, drive operating parameters (e.g., tape speed and tape tension), mechanical properties of the tape, and tape geometry (e.g., cupping and curvature). The objective of the present study is to evaluate guiding and tribological performance of single-flanged guides with porous air bearings in a linear tape drive. A comparison of guiding performance of the dual flanged stationary guides and single-flanged guides with porous air bearings is performed. The effect of tape path geometry, drive operating conditions (speed and tension) and tape edge quality of factory-slit tapes on tape guiding are evaluated during short-term tests. A lateral force measurement technique is used to measure the force exerted by the tape edge on the guide flange. A technique for the lateral tape motion measurement is used to study the effect of continuous sliding on tape guiding. Wear tests up to 5000 cycles are conducted and coefficient of friction and lateral tape motion are monitored to study the effect of drive operating conditions (speed and tension), edge quality of factory-slit tapes and tape thickness on tape guiding. Optical microscopy, atomic force microscopy and scanning electron microscopy are employed to study and quantify the quality of tape edge
End effect braking force reduction in high-speed single-sided linear induction machine
International Nuclear Information System (INIS)
Shiri, Abbas; Shoulaie, Abbas
2012-01-01
Highlights: ► A new analytical equation to model the end effect braking force of SLIM is derived. ► Equations for efficiency, power factor and output thrust are analytically derived. ► The effect of design variables on the performance of the motor is analyzed. ► An optimization method is employed to minimize the end effect braking force (EEBF). ► The results show that EEBF is minimized by appropriate selection of motor parameters. - Abstract: Linear induction motors have been widely employed in industry because of their simple structure and low construction cost. However, they suffer from low efficiency and power factor. In addition, existence of so called end effect influences their performance especially in high speeds. The end effect deteriorates the performance of the motor by producing braking force. So, in this paper, by using Duncan equivalent circuit model, a new analytical equation is proposed to model end effect braking force. Employing the proposed equation and considering all phenomena involved in the single-sided linear induction motor, a simple design procedure is presented and the effect of different design variables on the performance of the motor is analyzed. A multi-objective optimization method based on genetic algorithm is introduced to maximize efficiency and power factor, as well as to minimize the end effect braking force, simultaneously. Finally, to validate the optimization results, 2D finite element method is employed.
Kendal, W S
2000-04-01
To illustrate how probability-generating functions (PGFs) can be employed to derive a simple probabilistic model for clonogenic survival after exposure to ionizing irradiation. Both repairable and irreparable radiation damage to DNA were assumed to occur by independent (Poisson) processes, at intensities proportional to the irradiation dose. Also, repairable damage was assumed to be either repaired or further (lethally) injured according to a third (Bernoulli) process, with the probability of lethal conversion being directly proportional to dose. Using the algebra of PGFs, these three processes were combined to yield a composite PGF that described the distribution of lethal DNA lesions in irradiated cells. The composite PGF characterized a Poisson distribution with mean, chiD+betaD2, where D was dose and alpha and beta were radiobiological constants. This distribution yielded the conventional linear-quadratic survival equation. To test the composite model, the derived distribution was used to predict the frequencies of multiple chromosomal aberrations in irradiated human lymphocytes. The predictions agreed well with observation. This probabilistic model was consistent with single-hit mechanisms, but it was not consistent with binary misrepair mechanisms. A stochastic model for radiation survival has been constructed from elementary PGFs that exactly yields the linear-quadratic relationship. This approach can be used to investigate other simple probabilistic survival models.
Yoo, Hyejin
2012-10-25
Perylenediimide (PDI) molecules are promising building blocks for photophysical studies of electronic interactions within multichromophore arrays. Such PDI arrays are important materials for fabrication of molecular nanodevices such as organic light-emitting diodes, organic semiconductors, and biosensors because of their high photostability, chemical and physical inertness, electron affinity, and high tinctorial strength over the entire visible spectrum. In this work, PDIs have been organized into linear (L3) and trefoil (T3) trimer molecules and investigated by single-molecule fluorescence microscopy to probe the relationship between molecular structures and interchromophoric electronic interactions. We found a broad distribution of coupling strengths in both L3 and T3 and hence strong/weak coupling between PDI units by monitoring spectral peak shifts in single-molecule fluorescence spectra upon sequential photobleaching of each constituent chromophore. In addition, we used a wide-field defocused imaging technique to resolve heterogeneities in molecular structures of L3 and T3 embedded in a PMMA polymer matrix. A systematic comparison between the two sets of experimental results allowed us to infer the correlation between intermolecular interactions and molecular structures. Our results show control of the PDI intermolecular interactions using suitable multichromophoric structures. © 2012 American Chemical Society.
Complexity in Linear Systems: A Chaotic Linear Operator on the Space of Odd 2π-Periodic Functions
Directory of Open Access Journals (Sweden)
Tamás Kalmár-Nagy
2017-01-01
Full Text Available Not just nonlinear systems but infinite-dimensional linear systems can exhibit complex behavior. It has long been known that twice the backward shift on the space of square-summable sequences l2 displays chaotic dynamics. Here we construct the corresponding operator C on the space of 2π-periodic odd functions and provide its representation involving a Principal Value Integral. We explicitly calculate the eigenfunction of this operator, as well as its periodic points. We also provide examples of chaotic and unbounded trajectories of C.
Differentiability of Palmer's linearization Theorem and converse result for density functions
Castañeda, Alvaro; Robledo, Gonzalo
2014-01-01
We study differentiability properties in a particular case of the Palmer's linearization Theorem, which states the existence of an homeomorphism $H$ between the solutions of a linear ODE system having exponential dichotomy and a quasilinear system. Indeed, if the linear system is uniformly asymptotically stable, sufficient conditions ensuring that $H$ is a $C^{2}$ preserving orientation diffeomorphism are given. As an application, we generalize a converse result of density functions for a non...
Single-Event Effect Testing of the Linear Technology LTC6103HMS8#PBF Current Sense Amplifier
Yau, Ka-Yen; Campola, Michael J.; Wilcox, Edward
2016-01-01
The LTC6103HMS8#PBF (henceforth abbreviated as LTC6103) current sense amplifier from Linear Technology was tested for both destructive and non-destructive single-event effects (SEE) using the heavy-ion cyclotron accelerator beam at Lawrence Berkeley National Laboratory (LBNL) Berkeley Accelerator Effects (BASE) facility. During testing, the input voltages and output currents were monitored to detect single event latch-up (SEL) and single-event transients (SETs).
Item Purification in Differential Item Functioning Using Generalized Linear Mixed Models
Liu, Qian
2011-01-01
For this dissertation, four item purification procedures were implemented onto the generalized linear mixed model for differential item functioning (DIF) analysis, and the performance of these item purification procedures was investigated through a series of simulations. Among the four procedures, forward and generalized linear mixed model (GLMM)…
Directory of Open Access Journals (Sweden)
Edivaldo Antonio Bulba
2004-01-01
Full Text Available São apresentados métodos para determinação dos índices de capacidade tais como Cp e Cpk aplicados no "design for six sigma" (DFSS quando a característica de qualidade é não-observável e dada por Y = f(X1, X2, X3,....Xk, onde Xi são variáveis aleatórias com média e variância respectivamente iguais a miXi e sigma2Xi; f é uma função conhecida. A determinação é baseada na série de Taylor e o procedimento será ilustrado com exemplos práticos.Here we present methods to determine capabilit indices such as Cp and Cpk to be applied in "design for six sigma" (DFSS when the quality characteristic of interest Y is unobservable but given by Y = f(X1, X2, X3,....Xk, where Xi's are random variables with means and variance respectively equal to muXi and sigma2Xi; f is a known function. The determination is based on Taylor series and we illustrate the procedure with practical examples.
Studies with Parabolic Parabolic Linear Parabolic (PPLP) momentum function in the LHC
Solfaroli Camillocci, Matteo; Timko, Helga; Wenninger, Jorg; CERN. Geneva. ATS Department
2018-01-01
Measurements performed with a Parabolic Parabolic Linear Parabolic (PPLP) momentum function in the LHC. Three attempts have been performed with a pilot bunch and one with nominal bunch (1.1x1011 p/bunch).
Non-linear shape functions over time in the space-time finite element method
Directory of Open Access Journals (Sweden)
Kacprzyk Zbigniew
2017-01-01
Full Text Available This work presents a generalisation of the space-time finite element method proposed by Kączkowski in his seminal of 1970’s and early 1980’s works. Kączkowski used linear shape functions in time. The recurrence formula obtained by Kączkowski was conditionally stable. In this paper, non-linear shape functions in time are proposed.
Single-photon-sensitive linear-mode APD ladar receiver developments
Williams, George M.; Compton, Madison A.; Huntington, Andrew S.
2008-04-01
New measurements are presented for multi-stage InGaAs avalanche photodiodes (APDs) which have the potential to perform GHz-rate single photon counting in linear mode. No increase in dark current was measured for an 11-device sample of 5-stage APDs following 717 hours of accelerated aging under bias at 50°C, during an initial lifetime study. Impulse response times of 0.45 ns, 0.9 ns, and 1.1 ns were measured directly for 6-, 8-, and 10-stage APDs, respectively, operated at a nominal gain of M=10. To assess the suitability of the technology for a NASA optical communications application, separate samples of 5-stage APDs were irradiated by 1- and 2-MeV protons at the University of Washington's Center for Experimental Nuclear Physics and Astrophysics (UW CENPA) and by 63.5-MeV protons at the University of California Davis, Crocker Nuclear Laboratory (UCD CNL). Good agreement between calculated non-ionizing energy loss (NIEL) and observed damage was found for the low-energy protons at fluences of 10 10 and 10 11 cm -2. A NIEL calculation successfully predicted the damage observed following a 5×10 10 cm -2 dose of 63.5-MeV protons by extrapolating from 2 MeV data, which suggests that displacement damage is the dominant mechanism.
A novel L-shaped linear ultrasonic motor operating in a single resonance mode
Zhang, Bailiang; Yao, Zhiyuan; Liu, Zhen; Li, Xiaoniu
2018-01-01
In this study, a large thrust linear ultrasonic motor using an L-shaped stator is described. The stator is constructed by two mutually perpendicular rectangular plate vibrators, one of which is mounted in parallel with the slider to make the motor structure to be more compact. The symmetric and antisymmetric modes of the stator based on the first order bending vibration of two vibrators are adopted, in which each resonance mode is assigned to drive the slider in one direction. The placement of piezoelectric ceramics in a stator could be determined by finite element analysis, and the influence of slots in the head block on the vibration amplitudes of driving foot was studied as well. Three types of prototypes (non-slotted, dual-slot, and single-slot) were fabricated and experimentally investigated. Experimental results demonstrated that the prototype with one slot exhibited the best mechanical output performance. The maximum loads under the excitation of symmetric mode and antisymmetric mode were 65 and 90 N, respectively.
Wang, Wenhong
2013-07-12
We report the observation of a large linear magnetoresistance (MR) and Shubnikov-de Hass (SdH) quantum oscillations in single crystals of YPdBi Heusler topological insulators. Owning to the successfully obtained the high-quality YPdBi single crystals, large non-saturating linear MR of as high as 350% at 5K and over 120% at 300K under a moderate magnetic field of 7T is observed. In addition to the large, field-linear MR, the samples exhibit pronounced SdH quantum oscillations at low temperature. Analysis of the SdH data manifests that the high-mobility bulk electron carriers dominate the magnetotransport and are responsible for the observed large linear MR in YPdBi crystals. These findings imply that the Heusler-based topological insulators have superiorities for investigating the novel quantum transport properties and developing the potential applications.
Non-linear cancer classification using a modified radial basis function classification algorithm.
Wang, Hong-Qiang; Huang, De-Shuang
2005-10-01
This paper proposes a modified radial basis function classification algorithm for non-linear cancer classification. In the algorithm, a modified simulated annealing method is developed and combined with the linear least square and gradient paradigms to optimize the structure of the radial basis function (RBF) classifier. The proposed algorithm can be adopted to perform non-linear cancer classification based on gene expression profiles and applied to two microarray data sets involving various human tumor classes: (1) Normal versus colon tumor; (2) acute myeloid leukemia (AML) versus acute lymphoblastic leukemia (ALL). Finally, accuracy and stability for the proposed algorithm are further demonstrated by comparing with the other cancer classification algorithms.
Jeong-Man Kim; Jang-Young Choi; Kyu-Seok Lee; Sung-Ho Lee
2017-01-01
This study focuses on the design and analysis of a linear oscillatory single-phase permanent magnet generator for free-piston stirling engine (FPSE) systems. In order to implement the design of linear oscillatory generator (LOG) for suitable FPSEs, we conducted electromagnetic analysis of LOGs with varying design parameters. Then, detent force analysis was conducted using assisted PM. Using the assisted PM gave us the advantage of using mechanical strength by detent force. To improve the effi...
Heinrich, Jochen; Schultz, Jan; Bosse, Magnus; Ziegelin, Günter; Lanka, Erich; Moelling, Karin
2002-10-01
For application of DNA in gene medicine plasmid or viral DNA is usually used as a vector for the gene of interest. To generate DNA with a minimum of foreign DNA sequences, we used the prokaryotic telomerase, protelomerase TelN, of bacteriophage N15. This is a novel enzyme with cleaving-joining activity, which is required for the formation of linear prophage DNA with closed ends in lysogenic bacteria. Acting on a telomere resolution site telRL, the protelomerase converts circular plasmid DNA into linear covalently closed dumbbell-shaped molecules ("doggybones") in a single-step enzyme reaction. Two such sites were inserted into an expression plasmid flanking a gene of interest. This is cleaved and joined by means of the protelomerase, yielding linear closed mini DNA coding for green fluorescent protein (EGFP) or interleukin-12 (IL-12). Upon transient transfection of human embryonal kidney cells, EGFP was expressed at higher levels from linear closed molecules than from linear open molecules generated by restriction endonucleases for comparison. The level of transcription was comparable to that observed for the parental plasmid DNA. To test whether the linear closed mini DNA molecules are functional in vivo the B16F10/C57BL/6 melanoma metastasis model was applied, where injection of IL-12-expressing DNA inhibits metastasis formation in the lung. The anti-metastatic effect of the IL-12-expressing linear closed DNA was equal or higher than that of the parental plasmid DNA. Therefore, the TelN/ telRL system is well suited to generate linear closed mini DNA with high stability and a minimum of foreign nucleotide sequences.
International Nuclear Information System (INIS)
Karadge, M.; Preuss, M.; Withers, P.J.; Bray, S.
2008-01-01
Effects of crystal orientation on weldability and microstructural evolution occurring during linear friction joining of single crystal nickel-base superalloy to polycrystalline nickel-base superalloy were studied. Electron microscopy was used to characterize deformation and microstructural development. Changes in friction coefficient with changes in crystal orientation were observed and correlated to the metallurgical adhesion. These changes were explained by taking into consideration the single crystal deformation mechanisms. It was concluded that the orientation of the single crystal with reference to the principal axes of the pressure force is of utmost importance during linear friction welding (LFW) due to changes in orientation of the primary slip system in the fcc-based single crystal lattice
Sim, Kok Swee; NorHisham, Syafiq
2016-11-01
A technique based on linear Least Squares Regression (LSR) model is applied to estimate signal-to-noise ratio (SNR) of scanning electron microscope (SEM) images. In order to test the accuracy of this technique on SNR estimation, a number of SEM images are initially corrupted with white noise. The autocorrelation function (ACF) of the original and the corrupted SEM images are formed to serve as the reference point to estimate the SNR value of the corrupted image. The LSR technique is then compared with the previous three existing techniques known as nearest neighbourhood, first-order interpolation, and the combination of both nearest neighborhood and first-order interpolation. The actual and the estimated SNR values of all these techniques are then calculated for comparison purpose. It is shown that the LSR technique is able to attain the highest accuracy compared to the other three existing techniques as the absolute difference between the actual and the estimated SNR value is relatively small. SCANNING 38:771-782, 2016. © 2016 Wiley Periodicals, Inc. © Wiley Periodicals, Inc.
The effect of Moidal non-linear blending function for dual-energy CT on CT image quality
International Nuclear Information System (INIS)
Zhang Fan; Yang Li
2011-01-01
Objective: To compare the difference between linear blending and non-linear blending function for dual-energy CT, and to evaluate the effect on CT image quality. Methods: The model was made of a piece of fresh pork liver inserted with 5 syringes containing various concentrations of iodine solutions (16.3, 26.4, 48.7, 74.6 and 112.3 HU). Linear blending images were automatically reformatted after the model was scanned in the dual-energy mode. Non-linear blending images were reformatted using the software of optimal contrast in Syngo workstation. Images were divided into 3 groups, including linear blending group, non-linear blending group and 120 kV group. Contrast noise ratio (CNR) were measured and calculated respectively in the 3 groups and the different figure of merit (FOM) values between the groups were compared using one-way ANOVA. Twenty patients scanned in the dual-energy mode were randomly selected and the SNR of their liver, renal cortex, spleen, pancreas and abdominal aorta were measured. The independent sample t test was used to compare the difference of signal to noise ratio (SNR) between linear blending group and non linear blending group. Two readers' agreement score and single-blind method were used to investigate the conspicuity difference between linear blending group and non linear blending group. Results: With models of different CT values, the FOM values in non-linear blending group were 20.65± 8.18, 11.40±4.25, 1.60±0.82, 2.40±1.13, 45.49±17.86. In 74.6 HU and 112.3 HU models, the differences of the FOM values observed among the three groups were statistically significant (P<0.05), which were 0.30±0.06 and 14.43±4.59 for linear blending group, and 0.22±0.05 and 15.31±5.16 for 120 kV group. And non-linear blending group had a better FOM value. The SNR of renal cortex and abdominal aorta were 19.2±5.1 and 36.5±13.9 for non-linear blending group, while they were 12.4±3.8 and 22.6±7.0 for linear blending group. There were statistically
Applications of Kalman filters based on non-linear functions to numerical weather predictions
Directory of Open Access Journals (Sweden)
G. Galanis
2006-10-01
Full Text Available This paper investigates the use of non-linear functions in classical Kalman filter algorithms on the improvement of regional weather forecasts. The main aim is the implementation of non linear polynomial mappings in a usual linear Kalman filter in order to simulate better non linear problems in numerical weather prediction. In addition, the optimal order of the polynomials applied for such a filter is identified. This work is based on observations and corresponding numerical weather predictions of two meteorological parameters characterized by essential differences in their evolution in time, namely, air temperature and wind speed. It is shown that in both cases, a polynomial of low order is adequate for eliminating any systematic error, while higher order functions lead to instabilities in the filtered results having, at the same time, trivial contribution to the sensitivity of the filter. It is further demonstrated that the filter is independent of the time period and the geographic location of application.
Li, Ranran; Lai, Youzhi; Zhang, Yumei; Yao, Li; Wu, Xia
2017-01-01
Leukoaraiosis (LA) describes diffuse white matter abnormalities apparent in computed tomography (CT) or magnetic resonance (MR) brain scans. Patients with LA generally show varying degrees of cognitive impairment, which can be classified as cognitively normal (CN), mild cognitive impairment (MCI), and dementia. However, a consistent relationship between the degree of LA and the level of cognitive impairment has not yet been established. We used functional magnetic resonance imaging (fMRI) to explore possible neuroimaging biomarkers for classification of cognitive level in LA. Functional connectivity (FC) between brain regions was calculated using Pearson's correlation coefficient (PCC), maximal information coefficient (MIC), and extended maximal information coefficient (eMIC). Next, FCs with high discriminative power for different cognitive levels in LA were used as features for classification based on support vector machine. CN and MCI were classified with accuracies of 75.0, 61.9, and 91.1% based on features from PCC, MIC, and eMIC, respectively. MCI and dementia were classified with accuracies of 80.1, 86.2, and 87.4% based on features from PCC, MIC, and eMIC, respectively. CN and dementia were classified with accuracies of 80.1, 89.9, and 94.4% based on features from PCC, MIC, and eMIC, respectively. Our results suggest that features extracted from fMRI were efficient for classification of cognitive impairment level in LA, especially, when features were based on a non-linear method (eMIC).
Completeness, special functions and uncertainty principles over q-linear grids
International Nuclear Information System (INIS)
Abreu, LuIs Daniel
2006-01-01
We derive completeness criteria for sequences of functions of the form f(xλ n ), where λ n is the nth zero of a suitably chosen entire function. Using these criteria, we construct complete nonorthogonal systems of Fourier-Bessel functions and their q-analogues, as well as other complete sets of q-special functions. We discuss connections with uncertainty principles over q-linear grids and the completeness of certain sets of q-Bessel functions is used to prove that, if a function f and its q-Hankel transform both vanish at the points {q -n } ∞ n=1 , 0 n } ∞ n=-∞
International Nuclear Information System (INIS)
Pivi, Mauro; Raubenheimer, Tor O.; Ghalam, Ali; Harkay, Katherine; Ohmi, Kazuhito; Wanzenberg, Rainer; Wolski, Andrzej; Zimmermann, Frank
2005-01-01
Collective instabilities caused by the formation of an electron cloud (EC) are a potential limitation to the performances of the damping rings for a future linear collider. In this paper, we present recent simulation results for the electron cloud build-up in damping rings of different circumferences and discuss the single-bunch instabilities driven by the electron cloud
A Direct Algorithm for Pole Placement by State-derivative Feedback for Single-input Linear Systems
Directory of Open Access Journals (Sweden)
Taha H. S. Abdelaziz
2003-01-01
Full Text Available This paper deals with the direct solution of the pole placement problem for single-input linear systems using state-derivative feedback. This pole placement problem is always solvable for any controllable systems if all eigenvalues of the original system are nonzero. Then any arbitrary closed-loop poles can be placed in order to achieve the desired system performance. The solving procedure results in a formula similar to the Ackermann formula. Its derivation is based on the transformation of a linear single-input system into Frobenius canonical form by a special coordinate transformation, then solving the pole placement problem by state derivative feedback. Finally the solution is extended also for single-input time-varying control systems. The simulation results are included to show the effectiveness of the proposed approach.
Energy Technology Data Exchange (ETDEWEB)
Wei, Hai-Rui, E-mail: hrwei@ustb.edu.cn; Liu, Ji-Zhen
2017-02-15
It is very important to seek an efficient and robust quantum algorithm demanding less quantum resources. We propose one-photon three-qubit original and refined Deutsch–Jozsa algorithms with polarization and two linear momentums degrees of freedom (DOFs). Our schemes are constructed by solely using linear optics. Compared to the traditional ones with one DOF, our schemes are more economic and robust because the necessary photons are reduced from three to one. Our linear-optic schemes are working in a determinate way, and they are feasible with current experimental technology.
Capillary electrophoresis of covalently functionalized single-chirality carbon nanotubes.
He, Pingli; Meany, Brendan; Wang, Chunyan; Piao, Yanmei; Kwon, Hyejin; Deng, Shunliu; Wang, YuHuang
2017-07-01
We demonstrate the separation of chirality-enriched single-walled carbon nanotubes (SWCNTs) by degree of surface functionalization using high-performance CE. Controlled amounts of negatively charged and positively charged functional groups were attached to the sidewall of chirality-enriched SWCNTs through covalent functionalization using 4-carboxybenzenediazonium tetrafluoroborate or 4-diazo-N,N-diethylaniline tetrafluoroborate, respectively. Surfactant- and pH-dependent studies confirmed that under conditions that minimized ionic screening effects, separation of these functionalized SWCNTs was strongly dependent on the surface charge density introduced through covalent surface chemistry. For both heterogeneous mixtures and single-chirality-enriched samples, covalently functionalized SWCNTs showed substantially increased peak width in electropherogram spectra compared to nonfunctionalized SWCNTs, which can be attributed to a distribution of surface charges along the functionalized nanotubes. Successful separation of functionalized single-chirality SWCNTs by functional density was confirmed with UV-Vis-NIR absorption and Raman scattering spectroscopies of fraction collected samples. These results suggest a high degree of structural heterogeneity in covalently functionalized SWCNTs, even for chirality-enriched samples, and show the feasibility of applying CE for high-performance separation of nanomaterials based on differences in surface functional density. © 2017 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
So, Tak-Shing Harry; Peng, Chao-Ying Joanne
This study compared the accuracy of predicting two-group membership obtained from K-means clustering with those derived from linear probability modeling, linear discriminant function, and logistic regression under various data properties. Multivariate normally distributed populations were simulated based on combinations of population proportions,…
Potential function methods for approximately solving linear programming problems theory and practice
Bienstock, Daniel
2002-01-01
Potential Function Methods For Approximately Solving Linear Programming Problems breaks new ground in linear programming theory. The book draws on the research developments in three broad areas: linear and integer programming, numerical analysis, and the computational architectures which enable speedy, high-level algorithm design. During the last ten years, a new body of research within the field of optimization research has emerged, which seeks to develop good approximation algorithms for classes of linear programming problems. This work both has roots in fundamental areas of mathematical programming and is also framed in the context of the modern theory of algorithms. The result of this work, in which Daniel Bienstock has been very much involved, has been a family of algorithms with solid theoretical foundations and with growing experimental success. This book will examine these algorithms, starting with some of the very earliest examples, and through the latest theoretical and computational developments.
Alkhalifah, Tariq Ali
2012-09-25
Traveltime inversion focuses on the geometrical features of the waveform (traveltimes), which is generally smooth, and thus, tends to provide averaged (smoothed) information of the model. On other hand, general waveform inversion uses additional elements of the wavefield including amplitudes to extract higher resolution information, but this comes at the cost of introducing non-linearity to the inversion operator, complicating the convergence process. We use unwrapped phase-based objective functions in waveform inversion as a link between the two general types of inversions in a domain in which such contributions to the inversion process can be easily identified and controlled. The instantaneous traveltime is a measure of the average traveltime of the energy in a trace as a function of frequency. It unwraps the phase of wavefields yielding far less non-linearity in the objective function than that experienced with conventional wavefields, yet it still holds most of the critical wavefield information in its frequency dependency. However, it suffers from non-linearity introduced by the model (or reflectivity), as reflections from independent events in our model interact with each other. Unwrapping the phase of such a model can mitigate this non-linearity as well. Specifically, a simple modification to the inverted domain (or model), can reduce the effect of the model-induced non-linearity and, thus, make the inversion more convergent. Simple numerical examples demonstrate these assertions.
Directory of Open Access Journals (Sweden)
Jeong-Man Kim
2017-05-01
Full Text Available This study focuses on the design and analysis of a linear oscillatory single-phase permanent magnet generator for free-piston stirling engine (FPSE systems. In order to implement the design of linear oscillatory generator (LOG for suitable FPSEs, we conducted electromagnetic analysis of LOGs with varying design parameters. Then, detent force analysis was conducted using assisted PM. Using the assisted PM gave us the advantage of using mechanical strength by detent force. To improve the efficiency, we conducted characteristic analysis of eddy-current loss with respect to the PM segment. Finally, the experimental result was analyzed to confirm the prediction of the FEA.
Kim, Jeong-Man; Choi, Jang-Young; Lee, Kyu-Seok; Lee, Sung-Ho
2017-05-01
This study focuses on the design and analysis of a linear oscillatory single-phase permanent magnet generator for free-piston stirling engine (FPSE) systems. In order to implement the design of linear oscillatory generator (LOG) for suitable FPSEs, we conducted electromagnetic analysis of LOGs with varying design parameters. Then, detent force analysis was conducted using assisted PM. Using the assisted PM gave us the advantage of using mechanical strength by detent force. To improve the efficiency, we conducted characteristic analysis of eddy-current loss with respect to the PM segment. Finally, the experimental result was analyzed to confirm the prediction of the FEA.
Functional Thinking Ways in Relation to Linear Function Tables of Elementary School Students
Tanisli, Dilek
2011-01-01
One of the basic components of algebraic thinking is functional thinking. Functional thinking involves focusing on the relationship between two (or more) varying quantities and such thinking facilitates the studies on both algebra and the notion of function. The development of functional thinking of students should start in the early grades and it…
Longitudinal wave function control in single quantum dots with an applied magnetic field.
Cao, Shuo; Tang, Jing; Gao, Yunan; Sun, Yue; Qiu, Kangsheng; Zhao, Yanhui; He, Min; Shi, Jin-An; Gu, Lin; Williams, David A; Sheng, Weidong; Jin, Kuijuan; Xu, Xiulai
2015-01-27
Controlling single-particle wave functions in single semiconductor quantum dots is in demand to implement solid-state quantum information processing and spintronics. Normally, particle wave functions can be tuned transversely by an perpendicular magnetic field. We report a longitudinal wave function control in single quantum dots with a magnetic field. For a pure InAs quantum dot with a shape of pyramid or truncated pyramid, the hole wave function always occupies the base because of the less confinement at base, which induces a permanent dipole oriented from base to apex. With applying magnetic field along the base-apex direction, the hole wave function shrinks in the base plane. Because of the linear changing of the confinement for hole wave function from base to apex, the center of effective mass moves up during shrinking process. Due to the uniform confine potential for electrons, the center of effective mass of electrons does not move much, which results in a permanent dipole moment change and an inverted electron-hole alignment along the magnetic field direction. Manipulating the wave function longitudinally not only provides an alternative way to control the charge distribution with magnetic field but also a new method to tune electron-hole interaction in single quantum dots.
Functionalization of Single Layer MoS$_2$ Honeycomb Structures
Ataca, C.; Ciraci, S.
2010-01-01
Based on the first-principles plane wave calculations, we studied the functionalization of the two-dimensional single layer MoS$_2$ structure via adatom adsorption and vacancy defect creation. Minimum energy adsorption sites are determined for sixteen different adatoms, each gives rise to diverse properties. Bare, single layer MoS$_2$, which is normally a nonmagnetic, direct band gap semiconductor, attains a net magnetic moment upon adsorption of specific transition metal atoms, as well as si...
Lee, Eunjee; Zhu, Hongtu; Kong, Dehan; Wang, Yalin; Giovanello, Kelly Sullivan; Ibrahim, Joseph G
2015-12-01
The aim of this paper is to develop a Bayesian functional linear Cox regression model (BFLCRM) with both functional and scalar covariates. This new development is motivated by establishing the likelihood of conversion to Alzheimer's disease (AD) in 346 patients with mild cognitive impairment (MCI) enrolled in the Alzheimer's Disease Neuroimaging Initiative 1 (ADNI-1) and the early markers of conversion. These 346 MCI patients were followed over 48 months, with 161 MCI participants progressing to AD at 48 months. The functional linear Cox regression model was used to establish that functional covariates including hippocampus surface morphology and scalar covariates including brain MRI volumes, cognitive performance (ADAS-Cog), and APOE status can accurately predict time to onset of AD. Posterior computation proceeds via an efficient Markov chain Monte Carlo algorithm. A simulation study is performed to evaluate the finite sample performance of BFLCRM.
Single image super-resolution using locally adaptive multiple linear regression.
Yu, Soohwan; Kang, Wonseok; Ko, Seungyong; Paik, Joonki
2015-12-01
This paper presents a regularized superresolution (SR) reconstruction method using locally adaptive multiple linear regression to overcome the limitation of spatial resolution of digital images. In order to make the SR problem better-posed, the proposed method incorporates the locally adaptive multiple linear regression into the regularization process as a local prior. The local regularization prior assumes that the target high-resolution (HR) pixel is generated by a linear combination of similar pixels in differently scaled patches and optimum weight parameters. In addition, we adapt a modified version of the nonlocal means filter as a smoothness prior to utilize the patch redundancy. Experimental results show that the proposed algorithm better restores HR images than existing state-of-the-art methods in the sense of the most objective measures in the literature.
Czech Academy of Sciences Publication Activity Database
Domoshnitsky, A.; Hakl, Robert; Šremr, Jiří
2012-01-01
Roč. 112, May 22 (2012), s. 1-23 ISSN 1025-5834 Institutional support: RVO:67985840 Keywords : periodic problem * linear functional differential system * non- negative solution Subject RIV: BA - General Mathematics Impact factor: 0.879, year: 2010 http://www.journalofinequalitiesandapplications.com/content/2012/1/112
Novel method of interpolation and extrapolation of functions by a linear initial value problem
CSIR Research Space (South Africa)
Shatalov, M
2008-09-01
Full Text Available A novel method of function approximation using an initial value, linear, ordinary differential equation (ODE) is presented. The main advantage of this method is to obtain the approximation expressions in a closed form. This technique can be taught...
DEFF Research Database (Denmark)
Abrahamsen, Trine Julie; Hansen, Lars Kai
2011-01-01
We investigate sparse non-linear denoising of functional brain images by kernel Principal Component Analysis (kernel PCA). The main challenge is the mapping of denoised feature space points back into input space, also referred to as ”the pre-image problem”. Since the feature space mapping is typi...
Minimization of Linear Functionals Defined on| Solutions of Large-Scale Discrete Ill-Posed Problems
DEFF Research Database (Denmark)
Elden, Lars; Hansen, Per Christian; Rojas, Marielba
2003-01-01
The minimization of linear functionals de ned on the solutions of discrete ill-posed problems arises, e.g., in the computation of con dence intervals for these solutions. In 1990, Elden proposed an algorithm for this minimization problem based on a parametric-programming reformulation involving...
Novak, Melissa A.
2017-01-01
The purpose of this qualitative practitioner research study was to describe middle school algebra students' experiences of learning linear functions through kinesthetic movement. Participants were comprised of 8th grade algebra students. Practitioner research was used because I wanted to improve my teaching so students will have more success in…
Roerdink, J.B.T.M.
1982-01-01
It is shown that the cumulant expansion for linear stochastic differential equations, hitherto used to compute one-time averages of the solution process, is also capable of yielding the two-time correlation and probability density functions. The general case with a coefficient matrix, an
Novel approaches in function-driven single-cell genomics.
Doud, Devin F R; Woyke, Tanja
2017-07-01
Deeper sequencing and improved bioinformatics in conjunction with single-cell and metagenomic approaches continue to illuminate undercharacterized environmental microbial communities. This has propelled the 'who is there, and what might they be doing' paradigm to the uncultivated and has already radically changed the topology of the tree of life and provided key insights into the microbial contribution to biogeochemistry. While characterization of 'who' based on marker genes can describe a large fraction of the community, answering 'what are they doing' remains the elusive pinnacle for microbiology. Function-driven single-cell genomics provides a solution by using a function-based screen to subsample complex microbial communities in a targeted manner for the isolation and genome sequencing of single cells. This enables single-cell sequencing to be focused on cells with specific phenotypic or metabolic characteristics of interest. Recovered genomes are conclusively implicated for both encoding and exhibiting the feature of interest, improving downstream annotation and revealing activity levels within that environment. This emerging approach has already improved our understanding of microbial community functioning and facilitated the experimental analysis of uncharacterized gene product space. Here we provide a comprehensive review of strategies that have been applied for function-driven single-cell genomics and the future directions we envision. © FEMS 2017.
Multi-point boundary value problems for linear functional-differential equations
Czech Academy of Sciences Publication Activity Database
Domoshnitsky, A.; Hakl, Robert; Půža, Bedřich
2017-01-01
Roč. 24, č. 2 (2017), s. 193-206 ISSN 1072-947X Institutional support: RVO:67985840 Keywords : boundary value problems * linear functional-differential equations * functional-differential inequalities Subject RIV: BA - General Mathematics OBOR OECD: Applied mathematics Impact factor: 0.290, year: 2016 https://www.degruyter.com/view/j/gmj.2017.24.issue-2/gmj-2016-0076/gmj-2016-0076. xml
On semi-Lipschitz functions with values in a quasi-normed linear space
Directory of Open Access Journals (Sweden)
José Manuel Sánchez-Álvarez
2005-10-01
Full Text Available In a recent paper, S. Romaguera and M. Sanchis discussed several properties of semi-Lipschitz real valued functions. In this paper we analyze the structure of the space of semi-Lipschitz functions that are valued in a quasi-normed linear space. Our approach is motivated, in part, by the fact that this structure can be applied to study some processes in the theory of complexity spaces.
Directory of Open Access Journals (Sweden)
V. Popov
2013-03-01
Full Text Available In the course of microeconomics it is convenient to use additive functions of requirements in educational purposes, in which the volume of requirements is set by the linear function of the price, revenue and other factors. But in arriving at the substitution effect there is a number of problems in which impossible answers come out. The formula adjustment concluded by the author, which will allow to avoid contradictions, is described in the article.
Multi-point boundary value problems for linear functional-differential equations
Czech Academy of Sciences Publication Activity Database
Domoshnitsky, A.; Hakl, Robert; Půža, Bedřich
2017-01-01
Roč. 24, č. 2 (2017), s. 193-206 ISSN 1072-947X Institutional support: RVO:67985840 Keywords : boundary value problems * linear functional-differential equations * functional-differential inequalities Subject RIV: BA - General Mathematics OBOR OECD: Applied mathematics Impact factor: 0.290, year: 2016 https://www.degruyter.com/view/j/gmj.2017.24.issue-2/gmj-2016-0076/gmj-2016-0076.xml
Single Image Super-Resolution Using Global Regression Based on Multiple Local Linear Mappings.
Choi, Jae-Seok; Kim, Munchurl
2017-03-01
Super-resolution (SR) has become more vital, because of its capability to generate high-quality ultra-high definition (UHD) high-resolution (HR) images from low-resolution (LR) input images. Conventional SR methods entail high computational complexity, which makes them difficult to be implemented for up-scaling of full-high-definition input images into UHD-resolution images. Nevertheless, our previous super-interpolation (SI) method showed a good compromise between Peak-Signal-to-Noise Ratio (PSNR) performances and computational complexity. However, since SI only utilizes simple linear mappings, it may fail to precisely reconstruct HR patches with complex texture. In this paper, we present a novel SR method, which inherits the large-to-small patch conversion scheme from SI but uses global regression based on local linear mappings (GLM). Thus, our new SR method is called GLM-SI. In GLM-SI, each LR input patch is divided into 25 overlapped subpatches. Next, based on the local properties of these subpatches, 25 different local linear mappings are applied to the current LR input patch to generate 25 HR patch candidates, which are then regressed into one final HR patch using a global regressor. The local linear mappings are learned cluster-wise in our off-line training phase. The main contribution of this paper is as follows: Previously, linear-mapping-based conventional SR methods, including SI only used one simple yet coarse linear mapping to each patch to reconstruct its HR version. On the contrary, for each LR input patch, our GLM-SI is the first to apply a combination of multiple local linear mappings, where each local linear mapping is found according to local properties of the current LR patch. Therefore, it can better approximate nonlinear LR-to-HR mappings for HR patches with complex texture. Experiment results show that the proposed GLM-SI method outperforms most of the state-of-the-art methods, and shows comparable PSNR performance with much lower
Non-linear controls influence functions in an aircraft dynamics simulator
Guerreiro, Nelson M.; Hubbard, James E., Jr.; Motter, Mark A.
2006-03-01
In the development and testing of novel structural and controls concepts, such as morphing aircraft wings, appropriate models are needed for proper system characterization. In most instances, available system models do not provide the required additional degrees of freedom for morphing structures but may be modified to some extent to achieve a compatible system. The objective of this study is to apply wind tunnel data collected for an Unmanned Air Vehicle (UAV), that implements trailing edge morphing, to create a non-linear dynamics simulator, using well defined rigid body equations of motion, where the aircraft stability derivatives change with control deflection. An analysis of this wind tunnel data, using data extraction algorithms, was performed to determine the reference aerodynamic force and moment coefficients for the aircraft. Further, non-linear influence functions were obtained for each of the aircraft's control surfaces, including the sixteen trailing edge flap segments. These non-linear controls influence functions are applied to the aircraft dynamics to produce deflection-dependent aircraft stability derivatives in a non-linear dynamics simulator. Time domain analysis of the aircraft motion, trajectory, and state histories can be performed using these nonlinear dynamics and may be visualized using a 3-dimensional aircraft model. Linear system models can be extracted to facilitate frequency domain analysis of the system and for control law development. The results of this study are useful in similar projects where trailing edge morphing is employed and will be instrumental in the University of Maryland's continuing study of active wing load control.
Single-tube linear DNA amplification for genome-wide studies using a few thousand cells
Shankaranarayanan, P.; Mendoza-Parra, M.A.; Gool, van W.; Trindade, L.M.; Gronemeyer, H.
2012-01-01
Linear amplification of DNA (LinDA) by T7 polymerase is a versatile and robust method for generating sufficient amounts of DNA for genome-wide studies with minute amounts of cells. LinDA can be coupled to a great number of global profiling technologies. Indeed, chromatin immunoprecipitation coupled
Byers, E. Sandra; Nichols, Shana; Voyer, Susan D.
2013-01-01
This study examined the sexual functioning of single adults (61 men, 68 women) with high functioning autism and Asperger syndrome living in the community with and without prior relationship experience. Participants completed an on-line questionnaire assessing autism symptoms, psychological functioning, and various aspects of sexual functioning. In…
Unsteady Solution of Non-Linear Differential Equations Using Walsh Function Series
Gnoffo, Peter A.
2015-01-01
Walsh functions form an orthonormal basis set consisting of square waves. The discontinuous nature of square waves make the system well suited for representing functions with discontinuities. The product of any two Walsh functions is another Walsh function - a feature that can radically change an algorithm for solving non-linear partial differential equations (PDEs). The solution algorithm of non-linear differential equations using Walsh function series is unique in that integrals and derivatives may be computed using simple matrix multiplication of series representations of functions. Solutions to PDEs are derived as functions of wave component amplitude. Three sample problems are presented to illustrate the Walsh function series approach to solving unsteady PDEs. These include an advection equation, a Burgers equation, and a Riemann problem. The sample problems demonstrate the use of the Walsh function solution algorithms, exploiting Fast Walsh Transforms in multi-dimensions (O(Nlog(N))). Details of a Fast Walsh Reciprocal, defined here for the first time, enable inversion of aWalsh Symmetric Matrix in O(Nlog(N)) operations. Walsh functions have been derived using a fractal recursion algorithm and these fractal patterns are observed in the progression of pairs of wave number amplitudes in the solutions. These patterns are most easily observed in a remapping defined as a fractal fingerprint (FFP). A prolongation of existing solutions to the next highest order exploits these patterns. The algorithms presented here are considered a work in progress that provide new alternatives and new insights into the solution of non-linear PDEs.
Liu, Qingshan; Wang, Jun
2011-04-01
This paper presents a one-layer recurrent neural network for solving a class of constrained nonsmooth optimization problems with piecewise-linear objective functions. The proposed neural network is guaranteed to be globally convergent in finite time to the optimal solutions under a mild condition on a derived lower bound of a single gain parameter in the model. The number of neurons in the neural network is the same as the number of decision variables of the optimization problem. Compared with existing neural networks for optimization, the proposed neural network has a couple of salient features such as finite-time convergence and a low model complexity. Specific models for two important special cases, namely, linear programming and nonsmooth optimization, are also presented. In addition, applications to the shortest path problem and constrained least absolute deviation problem are discussed with simulation results to demonstrate the effectiveness and characteristics of the proposed neural network.
Parameter-dependent PWQ Lyapunov function stability criteria for uncertain piecewise linear systems
Directory of Open Access Journals (Sweden)
Morten Hovd
2018-01-01
Full Text Available The calculation of piecewise quadratic (PWQ Lyapunov functions is addressed in view of stability analysis of uncertain piecewise linear dynamics. As main contribution, the linear matrix inequality (LMI approach proposed in (Johansson and Rantzer, 1998 for the stability analysis of PWL and PWA dynamics is extended to account for parametric uncertainty based on a improved relaxation technique. The results are applied for the analysis of a Phase Locked Loop (PLL benchmark and the ability to guarantee a stability region in the parameter space well beyond the state of the art is demonstrated.
KEELE, Minimization of Nonlinear Function with Linear Constraints, Variable Metric Method
International Nuclear Information System (INIS)
Westley, G.W.
1975-01-01
1 - Description of problem or function: KEELE is a linearly constrained nonlinear programming algorithm for locating a local minimum of a function of n variables with the variables subject to linear equality and/or inequality constraints. 2 - Method of solution: A variable metric procedure is used where the direction of search at each iteration is obtained by multiplying the negative of the gradient vector by a positive definite matrix which approximates the inverse of the matrix of second partial derivatives associated with the function. 3 - Restrictions on the complexity of the problem: Array dimensions limit the number of variables to 20 and the number of constraints to 50. These can be changed by the user
Orthogonality, Lommel integrals and cross product zeros of linear combinations of Bessel functions.
Ziener, Christian H; Kurz, Felix T; Buschle, Lukas R; Kampf, Thomas
2015-01-01
The cylindrical Bessel differential equation and the spherical Bessel differential equation in the interval [Formula: see text] with Neumann boundary conditions are considered. The eigenfunctions are linear combinations of the Bessel function [Formula: see text] or linear combinations of the spherical Bessel functions [Formula: see text]. The orthogonality relations with analytical expressions for the normalization constant are given. Explicit expressions for the Lommel integrals in terms of Lommel functions are derived. The cross product zeros [Formula: see text] and [Formula: see text] are considered in the complex plane for real as well as complex values of the index [Formula: see text] and approximations for the exceptional zero [Formula: see text] are obtained. A numerical scheme based on the discretization of the two-dimensional and three-dimensional Laplace operator with Neumann boundary conditions is presented. Explicit representations of the radial part of the Laplace operator in form of a tridiagonal matrix allow the simple computation of the cross product zeros.
Towards time-dependent current-density-functional theory in the non-linear regime.
Escartín, J M; Vincendon, M; Romaniello, P; Dinh, P M; Reinhard, P-G; Suraud, E
2015-02-28
Time-Dependent Density-Functional Theory (TDDFT) is a well-established theoretical approach to describe and understand irradiation processes in clusters and molecules. However, within the so-called adiabatic local density approximation (ALDA) to the exchange-correlation (xc) potential, TDDFT can show insufficiencies, particularly in violently dynamical processes. This is because within ALDA the xc potential is instantaneous and is a local functional of the density, which means that this approximation neglects memory effects and long-range effects. A way to go beyond ALDA is to use Time-Dependent Current-Density-Functional Theory (TDCDFT), in which the basic quantity is the current density rather than the density as in TDDFT. This has been shown to offer an adequate account of dissipation in the linear domain when the Vignale-Kohn (VK) functional is used. Here, we go beyond the linear regime and we explore this formulation in the time domain. In this case, the equations become very involved making the computation out of reach; we hence propose an approximation to the VK functional which allows us to calculate the dynamics in real time and at the same time to keep most of the physics described by the VK functional. We apply this formulation to the calculation of the time-dependent dipole moment of Ca, Mg and Na2. Our results show trends similar to what was previously observed in model systems or within linear response. In the non-linear domain, our results show that relaxation times do not decrease with increasing deposited excitation energy, which sets some limitations to the practical use of TDCDFT in such a domain of excitations.
Towards time-dependent current-density-functional theory in the non-linear regime
Energy Technology Data Exchange (ETDEWEB)
Escartín, J. M. [Université de Toulouse, UPS, Laboratoire de Physique Théorique, IRSAMC, F-31062 Toulouse Cedex (France); CNRS, UMR5152, F-31062 Toulouse Cedex (France); Theory of Condensed Matter Group, Cavendish Laboratory, University of Cambridge, J.J. Thomson Avenue, Cambridge CB3 0HE (United Kingdom); Vincendon, M.; Dinh, P. M.; Suraud, E. [Université de Toulouse, UPS, Laboratoire de Physique Théorique, IRSAMC, F-31062 Toulouse Cedex (France); CNRS, UMR5152, F-31062 Toulouse Cedex (France); Romaniello, P. [Laboratoire de Physique Théorique, CNRS, IRSAMC, Université Toulouse III - Paul Sabatier and European Theoretical Spectroscopy Facility, 118 Route de Narbonne, 31062 Toulouse Cedex (France); Reinhard, P.-G. [Institut für Theoretische Physik, Universität Erlangen, Staudtstraße 7, D-91058 Erlangen (Germany)
2015-02-28
Time-Dependent Density-Functional Theory (TDDFT) is a well-established theoretical approach to describe and understand irradiation processes in clusters and molecules. However, within the so-called adiabatic local density approximation (ALDA) to the exchange-correlation (xc) potential, TDDFT can show insufficiencies, particularly in violently dynamical processes. This is because within ALDA the xc potential is instantaneous and is a local functional of the density, which means that this approximation neglects memory effects and long-range effects. A way to go beyond ALDA is to use Time-Dependent Current-Density-Functional Theory (TDCDFT), in which the basic quantity is the current density rather than the density as in TDDFT. This has been shown to offer an adequate account of dissipation in the linear domain when the Vignale-Kohn (VK) functional is used. Here, we go beyond the linear regime and we explore this formulation in the time domain. In this case, the equations become very involved making the computation out of reach; we hence propose an approximation to the VK functional which allows us to calculate the dynamics in real time and at the same time to keep most of the physics described by the VK functional. We apply this formulation to the calculation of the time-dependent dipole moment of Ca, Mg and Na{sub 2}. Our results show trends similar to what was previously observed in model systems or within linear response. In the non-linear domain, our results show that relaxation times do not decrease with increasing deposited excitation energy, which sets some limitations to the practical use of TDCDFT in such a domain of excitations.
Kernel Function Tuning for Single-Layer Neural Networks
Czech Academy of Sciences Publication Activity Database
Vidnerová, Petra; Neruda, Roman
-, accepted 28.11. 2017 (2018) ISSN 2278-0149 R&D Projects: GA ČR GA15-18108S Institutional support: RVO:67985807 Keywords : single-layer neural networks * kernel methods * kernel function * optimisation Subject RIV: IN - Informatics, Computer Science http://www.ijmerr.com/
Theoretical foundations of functional data analysis, with an introduction to linear operators
Hsing, Tailen
2015-01-01
Theoretical Foundations of Functional Data Analysis, with an Introduction to Linear Operators provides a uniquely broad compendium of the key mathematical concepts and results that are relevant for the theoretical development of functional data analysis (FDA).The self-contained treatment of selected topics of functional analysis and operator theory includes reproducing kernel Hilbert spaces, singular value decomposition of compact operators on Hilbert spaces and perturbation theory for both self-adjoint and non self-adjoint operators. The probabilistic foundation for FDA is described from the
Dead time effects from linear amplifiers and discriminators in single detector systems
International Nuclear Information System (INIS)
Funck, E.
1986-01-01
The dead-time losses originating from a linear amplifier combined with a discriminator for pulse-height selection are investigated. Measurements are carried out to determine the type of dead time represented by the amplifier-discriminator combination. The corrections involved by feeding the discriminator output pulses into an electronic module producing a blocking time are discussed and practical hints are given to reduce them. (orig.)
Directory of Open Access Journals (Sweden)
Renke Han
2014-01-01
Full Text Available It is a very crucial problem to make a microgrid operated reasonably and stably. Considering the nonlinear mathematics model of inverter established in this paper, the input-output feedback linearization method is used to transform the nonlinear mathematics model of inverters to a linear tracking synchronization and consensus regulation control problem. Based on the linear mathematics model and multiagent consensus algorithm, a decentralized coordinated controller is proposed to make amplitudes and angles of voltages from inverters be consensus and active and reactive power shared in the desired ratio. The proposed control is totally distributed because each inverter only requires local and one neighbor’s information with sparse communication structure based on multiagent system. The hybrid consensus algorithm is used to keep the amplitude of the output voltages following the leader and the angles of output voltage as consensus. Then the microgrid can be operated more efficiently and the circulating current between DGs can be effectively suppressed. The effectiveness of the proposed method is proved through simulation results of a typical microgrid system.
Directory of Open Access Journals (Sweden)
Luiz Augusto da Cruz Meleiro
2005-06-01
Full Text Available In this work a MIMO non-linear predictive controller was developed for an extractive alcoholic fermentation process. The internal model of the controller was represented by two MISO Functional Link Networks (FLNs, identified using simulated data generated from a deterministic mathematical model whose kinetic parameters were determined experimentally. The FLN structure presents as advantages fast training and guaranteed convergence, since the estimation of the weights is a linear optimization problem. Besides, the elimination of non-significant weights generates parsimonious models, which allows for fast execution in an MPC-based algorithm. The proposed algorithm showed good potential in identification and control of non-linear processes.Neste trabalho um controlador preditivo não linear multivariável foi desenvolvido para um processo de fermentação alcoólica extrativa. O modelo interno do controlador foi representado por duas redes do tipo Functional Link (FLN, identificadas usando dados de simulação gerados a partir de um modelo validado experimentalmente. A estrutura FLN apresenta como vantagem o treinamento rápido e convergência garantida, já que a estimação dos seus pesos é um problema de otimização linear. Além disso, a eliminação de pesos não significativos gera modelos parsimoniosos, o que permite a rápida execução em algoritmos de controle preditivo baseado em modelo. Os resultados mostram que o algoritmo proposto tem grande potencial para identificação e controle de processos não lineares.
Optical Properties of Single- and Double-Functionalized Small Diamondoids.
Sarap, Chandra Shekar; Adhikari, Bibek; Meng, Sheng; Uhlig, Frank; Fyta, Maria
2018-03-30
The rational control of the electronic and optical properties of small functionalized diamond-like molecules, the diamondoids, is the focus of this work. Specifically, we investigate the single- and double- functionalization of the lower diamondoids, adamantane, diamantane, and triamantane with -NH 2 and -SH groups and extend the study to N-heterocyclic carbene (NHC) functionalization. On the basis of electronic structure calculations, we predict a significant change in the optical properties of these functionalized diamondoids. Our computations reveal that -NH 2 functionalized diamondoids show UV photoluminescence similar to ideal diamondoids while -SH substituted diamondoids hinder the UV photoluminescence due to the labile nature of the S-H bond in the first excited state. This study also unveils that the UV photoluminescence nature of -NH 2 diamondoids is quenched upon additional functionalization with the -SH group. The double-functionalized derivative can, thus, serve as a sensitive probe for biomolecule binding and sensing environmental changes. The preserved intrinsic properties of the NHC and the ideal diamondoid in NHC-functionalized-diamondoids suggests its utilization in diamondoid-based self-assembled monolayers (SAM), whose UV-photoluminescent signal would be determined entirely by the functionalized diamondoids. Our study aims to pave the path for tuning the properties of diamondoids through a selective choice of the type and number of functional groups. This will aid the realization of optoelectronic devices involving, for example, large-area SAM layers or diamondoid-functionalized electrodes.
Linear-response time-dependent density-functional theory with pairing fields.
Peng, Degao; van Aggelen, Helen; Yang, Yang; Yang, Weitao
2014-05-14
Recent development in particle-particle random phase approximation (pp-RPA) broadens the perspective on ground state correlation energies [H. van Aggelen, Y. Yang, and W. Yang, Phys. Rev. A 88, 030501 (2013), Y. Yang, H. van Aggelen, S. N. Steinmann, D. Peng, and W. Yang, J. Chem. Phys. 139, 174110 (2013); D. Peng, S. N. Steinmann, H. van Aggelen, and W. Yang, J. Chem. Phys. 139, 104112 (2013)] and N ± 2 excitation energies [Y. Yang, H. van Aggelen, and W. Yang, J. Chem. Phys. 139, 224105 (2013)]. So far Hartree-Fock and approximated density-functional orbitals have been utilized to evaluate the pp-RPA equation. In this paper, to further explore the fundamentals and the potential use of pairing matrix dependent functionals, we present the linear-response time-dependent density-functional theory with pairing fields with both adiabatic and frequency-dependent kernels. This theory is related to the density-functional theory and time-dependent density-functional theory for superconductors, but is applied to normal non-superconducting systems for our purpose. Due to the lack of the proof of the one-to-one mapping between the pairing matrix and the pairing field for time-dependent systems, the linear-response theory is established based on the representability assumption of the pairing matrix. The linear response theory justifies the use of approximated density-functionals in the pp-RPA equation. This work sets the fundamentals for future density-functional development to enhance the description of ground state correlation energies and N ± 2 excitation energies.
van Meer, R; Gritsenko, O V; Baerends, E J
2017-01-28
Straightforward interpretation of excitations is possible if they can be described as simple single orbital-to-orbital (or double, etc.) transitions. In linear response time-dependent density functional theory (LR-TDDFT), the (ground state) Kohn-Sham orbitals prove to be such an orbital basis. In contrast, in a basis of natural orbitals (NOs) or Hartree-Fock orbitals, excitations often employ many orbitals and are accordingly hard to characterize. We demonstrate that it is possible in these cases to transform to natural excitation orbitals (NEOs) which resemble very closely the KS orbitals and afford the same simple description of excitations. The desired transformation has been obtained by diagonalization of a submatrix in the equations of linear response time-dependent 1-particle reduced density matrix functional theory (LR-TDDMFT) for the NO transformation, and that of a submatrix in the linear response time-dependent Hartree-Fock (LR-TDHF) equations for the transformation of HF orbitals. The corresponding submatrix is already diagonal in the KS basis in the LR-TDDFT equations. While the orbital shapes of the NEOs afford the characterization of the excitations as (mostly) simple orbital-to-orbital transitions, the orbital energies provide a fair estimate of excitation energies.
Improving throughput of single-relay DF channel using linear constellation precoding
Fareed, Muhammad Mehboob
2014-08-01
In this letter, we propose a transmission scheme to improve the overall throughput of a cooperative communication system with single decode-and-forward relay. Symbol error rate and throughput analysis of the new scheme are presented to facilitate the performance comparison with the existing decode-and-forward relaying schemes. Simulation results are further provided to corroborate the analytical results. © 2012 IEEE.
International Nuclear Information System (INIS)
Kumar, K. Vasanth; Porkodi, K.; Rocha, F.
2008-01-01
A comparison of linear and non-linear regression method in selecting the optimum isotherm was made to the experimental equilibrium data of methylene blue sorption by activated carbon. The r 2 was used to select the best fit linear theoretical isotherm. In the case of non-linear regression method, six error functions, namely coefficient of determination (r 2 ), hybrid fractional error function (HYBRID), Marquardt's percent standard deviation (MPSD), average relative error (ARE), sum of the errors squared (ERRSQ) and sum of the absolute errors (EABS) were used to predict the parameters involved in the two and three parameter isotherms and also to predict the optimum isotherm. For two parameter isotherm, MPSD was found to be the best error function in minimizing the error distribution between the experimental equilibrium data and predicted isotherms. In the case of three parameter isotherm, r 2 was found to be the best error function to minimize the error distribution structure between experimental equilibrium data and theoretical isotherms. The present study showed that the size of the error function alone is not a deciding factor to choose the optimum isotherm. In addition to the size of error function, the theory behind the predicted isotherm should be verified with the help of experimental data while selecting the optimum isotherm. A coefficient of non-determination, K 2 was explained and was found to be very useful in identifying the best error function while selecting the optimum isotherm
Directory of Open Access Journals (Sweden)
Huihua Feng
2015-01-01
Full Text Available We present a novel design of a single-cylinder free piston engine linear generator (FPELG incorporating a linear motor as a rebound device. A systematic simulation model of this FPELG system was built containing a kinematic and dynamic model of the piston and mover, a magneto-electric model of the linear generator, a thermodynamic model of the single-cylinder engine, and a friction model between the piston ring and cylinder liner. Simulations were performed to understand the relationships between pre-set motor parameters and the running performance of the FPELG. From the simulation results, it was found that a motor rebound force with a parabolic profile had clear advantages over a force with a triangular profile, such as a higher running frequency and peak cylinder pressure, faster piston motion, etc. The rebound position and the amplitude of rebound force were also determined by simulations. The energy conversion characteristics of the generator were obtained from our FPELG test rig. The parameters of intake pressure, motor frequency, and load resistance were varied over certain ranges, and relationships among these three parameters were obtained. The electricity-generating characteristic parameters include output power and system efficiency, which can measure the quality of matching the controllable parameters. The output power can reach 25.9 W and the system efficiency can reach 13.7%. The results in terms of matching parameters and electricity-generating characteristics should be useful to future research in adapting these engines to various operating modes.
Experimental investigation of single small bubble motion in linear shear flow in water
Energy Technology Data Exchange (ETDEWEB)
Li, Zhongchun, E-mail: zhongchun.lee@gmail.com [Science and Technology on Reactor System Design Technology Laboratory, Chengdu 610041 (China); Tsinghua University, Beijing 10084 (China); Nuclear Power Institute of China, Chengdu 610041 (China); Zhao, Yang [School of Nuclear Engineering, Purdue University, West Lafayette, IN 47907 (United States); Song, Xiaoming [Nuclear Power Institute of China, Chengdu 610041 (China); Yu, Hongxing [Science and Technology on Reactor System Design Technology Laboratory, Chengdu 610041 (China); Nuclear Power Institute of China, Chengdu 610041 (China); Jiang, Shengyao [Tsinghua University, Beijing 10084 (China); Ishii, Mamoru, E-mail: ishii@purdue.edu [School of Nuclear Engineering, Purdue University, West Lafayette, IN 47907 (United States)
2016-08-15
Highlights: • The bubble motion in simple linear shear flow was experimentally investigated. • The bubble trajectories, bubble velocity and drag and lift force were obtained using image process routine. • The bubble trajectory was coupled with a zigzag motion and incline path. • The lift force was kept negative and it decreased when bubble diameter and shear flow magnitude increased. - Abstract: The motion of small bubble in a simple shear flow in water was experimental studied. Stable shear flow with low turbulence level was achieved with curved screen and measured using LDV. The bubbles were captured by high speed camera and the captured images were processed with digital image routine. The bubble was released from a capillary tube. The instantaneous bubble position, bubble velocity and forces were obtained based on the captured parameters. The quasi-steady lift coefficient was determined by the linear fitting of the bubble trajectory of several cycles. The results indicated that the lateral migration was coupled with the zigzag motion of bubble in the present experiment. The bubble migrated to the left side and its quasi-steady lift coefficient was negative. Good repeatable results were observed by measurements of 18 bubbles. The bubble motion in shear flow in water was first experimental studied and negative lift force was observed in the present study condition. The lift coefficient decreased when shear stress magnitude or bubble diameter increased in the present experiment condition.
Hijas, K. M.; Madan Kumar, S.; Byrappa, K.; Geethakrishnan, T.; Jeyaram, S.; Nagalakshmi, R.
2018-03-01
Single crystals of 2-methoxy-4(phenyliminomethyl)phenol were grown from ethanol by slow evaporation solution growth technique. Single crystal X-ray diffraction experiment reveals the crystallization in orthorhombic system having non-centrosymmetric space group C2221. Geometrical optimization by density functional theory method was carried out using Gaussian program and compared with experimental results. Detailed experimental and theoretical vibrational analyses were carried out and the results were correlated to find close agreement. Thermal analyses show the material is thermally stable with a melting point of 159 °C. Natural bond orbital analysis was carried out to explain charge transfer interactions through hydrogen bonding. Relatively smaller HOMO-LUMO band gap favors the non linear optical activity of the molecule. Natural population analysis and molecular electrostatic potential calculations visualize the charge distribution in an isolated molecule. Calculated first-order molecular hyperpolarizability and preliminary second harmonic generation test carried out using Kurtz-Perry technique establish 2-methoxy-4(phenyliminomethyl)phenol crystal as a good non linear optical material. Z-scan proposes the material for reverse saturable absorption.
Ultra-High Speed Switching Functionalities using none-linear fibres
DEFF Research Database (Denmark)
Galili, Michael
2007-01-01
This thesis deals with optical signal processing of high-speed optical data signals at 160-640 Gbit/s. By exploiting non-linear effects in optical fibres several signal processing functionalities are implemented. This includes wavelength conversion of intensity modulated and phase modulated data...... signals, conversion between intensity and phase modulation, clock recovery for synchronising a receiver to an incoming data signal and finally reduction of timing sensitivity in such high-speed systems....
Czech Academy of Sciences Publication Activity Database
Haslinger, Jaroslav; Repin, S.; Sysala, Stanislav
2016-01-01
Roč. 61, č. 5 (2016), s. 527-564 ISSN 0862-7940 R&D Projects: GA MŠk LQ1602 Institutional support: RVO:68145535 Keywords : functionals with linear growth * limit load * truncation method * perfect plasticity Subject RIV: BA - General Mathematics Impact factor: 0.618, year: 2016 http://link.springer.com/article/10.1007/s10492-016-0146-6
Ultrametric properties of the attractor spaces for random iterated linear function systems
Buchovets, A. G.; Moskalev, P. V.
2018-03-01
We investigate attractors of random iterated linear function systems as independent spaces embedded in the ordinary Euclidean space. The introduction on the set of attractor points of a metric that satisfies the strengthened triangle inequality makes this space ultrametric. Then inherent in ultrametric spaces the properties of disconnectedness and hierarchical self-similarity make it possible to define an attractor as a fractal. We note that a rigorous proof of these properties in the case of an ordinary Euclidean space is very difficult.
Directory of Open Access Journals (Sweden)
Salih Yalcinbas
2016-01-01
Full Text Available In this paper, a new collocation method based on the Fibonacci polynomials is introduced to solve the high-order linear Volterra integro-differential equations under the conditions. Numerical examples are included to demonstrate the applicability and validity of the proposed method and comparisons are made with the existing results. In addition, an error estimation based on the residual functions is presented for this method. The approximate solutions are improved by using this error estimation.
Directory of Open Access Journals (Sweden)
Victor Rizov
2017-07-01
Full Text Available An analytical study of longitudinal fracture in two-dimensional functionally graded cantilever beam configurations is carried-out with taking into account the non-linear behavior of material. A longitudinal crack is located arbitrary along the beam cross-section height. The material is functionally graded along the width as well as along the height of beam. The external loading consists of a bending moment applied at the free end of lower crack arm. Fracture is studied in terms of the strain energy release rate by considering the beam complementary strain energy. The solution derived is verified by analyzing the longitudinal crack with the help of the J-integral. The distribution of J-integral value along the crack front is studied. The effects of crack location, material gradients and non-linear behavior of material on the fracture are elucidated. The analysis reveals that the material non-linearity has to be taken into account in fracture mechanics based safety design of structural members and components made of two-dimensional functionally graded materials.
Coherent non-linear optical response in SU(2) symmetry broken single and bilayer graphene
Energy Technology Data Exchange (ETDEWEB)
Kumar, Vipin, E-mail: k.vipin@iitg.ernet.in; Enamullah,; Kumar, Upendra; Setlur, Girish S.
2014-03-01
Anomalous Rabi oscillations in single and bilayer graphene, in the absence of time-reversal symmetry, are described. The main findings of this work are that intra-layer sublattice space asymmetry has a remarkable effect on anomalous Rabi frequency in single and bilayer graphene, namely it is offset by the asymmetry parameter. However, the conventional Rabi frequency is nearly independent of the asymmetry parameter. Inter-layer asymmetry in bilayer graphene has an even more significant effect on anomalous Rabi frequency. When inter-layer asymmetry is taken into account, the anomalous Rabi frequency versus the external field goes through a minimum. The induced current in the frequency domain in these systems shows a finite threshold behavior even for vanishingly small applied fields. These offset oscillations are attributable to the asymmetry parameter in these systems, and are observable only for weak applied fields. For stronger applied fields these phenomena tend towards those without asymmetry.
Peculiarities of linear thermal expansion of CuInS2 single crystal
International Nuclear Information System (INIS)
Akira, Nagaoka; Kenji, Yoshino; Hideto, Miyake
2010-01-01
Full text : I-III-VI 2 chalcopyrire semiconductors have made rapid progress in recent years. In addition chalcopyrite semiconductors show unique thermal properties. Usually, liner thermal expansion in semiconductors increases with increasing temperature. However, liner thermal expansion of most chalcopyrite semiconductors decreases at low temperature. For example, AgGaSe 2 shows decreasing the liner thermal expansion below 100 K 1 , 2). It is well known that high-quality single crystals of the I-III-VI 2 compounds are difficult to grow because most of the compounds grow through a peritectic reaction or a solid state transition during the cooling process. CuInS 2 single crystal can be grown by traveling heater method (THM), which is one of the solution growth techniques. Advantages of the THM growth are following that growth temperature is low compared with that of the other melt growth and larger crystals can be grown compared with a conventional solution growth. In a previous study, CuGaS 2 , CuGaSe 2 , CuGaTe 2 , CuInSe 2 ternary compounds have been obtained by the THM technique. In this work, it is investigated a liner thermal expansion of single crystal CuInS 2 by using X-ray diffraction. Measurement temperature was changed from 10 K to 300 K. From results of XRD measurement, it is calculated lattice constants of a and c axes and the liner thermal expansion. As a result, lattice constants of a axis increase with increasing temperature, that of c axis decreases with increasing temperature. The liner thermal expansion decreases for T 2 single crystal at low temperature
Directory of Open Access Journals (Sweden)
Christoforos eChristoforou
2013-03-01
Full Text Available A key objective in systems and cognitive neuroscience is to establish associations between behavioral measures and concurrent neuronal activity. Single-trial analysis has been proposed as a novel method for characterizing such correlates by first extracting neural components that maximally discriminate trials on a categorical variable, (e.g., hard vs. easy, correct vs. incorrect etc., and then correlate those components to a continues dependent variable of interest , e.g. reaction time, difficulty Index, etc. However, often times in experiment design it is difficult to either define meaningful categorical variables, or to record enough trials for the method to extract the discriminant components. Experiments designed for the study of the effects of stimulus presentation modality in working memory provide such a scenario, as will be exemplified. In this paper, we proposed a new approach to single-trial analysis in which we directly extract neural activity that maximally correlates to single-trial manual response times; eliminating the need to define an arbitrary categorical variable. We demonstrate our method on real EEG data recordings from the study of stimulus presentation modality effect.
Formation Control of Multirobot Based on I/O Feedback Linearization and Potential Function
Directory of Open Access Journals (Sweden)
Jie Dong
2014-01-01
Full Text Available Standard techniques of I/O linearization are widely applied to leader-follower approach for multirobot formation control. However general leader-follower approach cannot adapt to the environment with obstacles. Concerning that issue, a formation control method of multirobot system based on potential function is proposed in this paper, and a new control law is designed by choosing a proper potential function and employing Lyapunov stability theory, which stabilizes the formation of the multirobot system. We combine the method with a leader-follower approach to solve the problem that the latter cannot avoid obstacles. Simulation results are given to validate the method.
Huber, Stefan; Klein, Elise; Moeller, Korbinian; Willmes, Klaus
2015-10-01
In neuropsychological research, single-cases are often compared with a small control sample. Crawford and colleagues developed inferential methods (i.e., the modified t-test) for such a research design. In the present article, we suggest an extension of the methods of Crawford and colleagues employing linear mixed models (LMM). We first show that a t-test for the significance of a dummy coded predictor variable in a linear regression is equivalent to the modified t-test of Crawford and colleagues. As an extension to this idea, we then generalized the modified t-test to repeated measures data by using LMMs to compare the performance difference in two conditions observed in a single participant to that of a small control group. The performance of LMMs regarding Type I error rates and statistical power were tested based on Monte-Carlo simulations. We found that starting with about 15-20 participants in the control sample Type I error rates were close to the nominal Type I error rate using the Satterthwaite approximation for the degrees of freedom. Moreover, statistical power was acceptable. Therefore, we conclude that LMMs can be applied successfully to statistically evaluate performance differences between a single-case and a control sample. Copyright © 2015 Elsevier Ltd. All rights reserved.
Directory of Open Access Journals (Sweden)
Guiru Gu
2011-01-01
Full Text Available We report an all-printed thin-film transistor (TFT on a polyimide substrate with linear transconductance response. The TFT is based on our purified single-walled carbon nanotube (SWCNT solution that is primarily consists of semiconducting carbon nanotubes (CNTs with low metal impurities. The all-printed TFT exhibits a high ON/OFF ratio of around 103 and bias-independent transconductance over a certain gate bias range. Such bias-independent transconductance property is different from that of conventional metal-oxide-semiconductor field-effect transistors (MOSFETs due to the special band structure and the one-dimensional (1D quantum confined density of state (DOS of CNTs. The bias-independent transconductance promises modulation linearity for analog electronics.
Nguyen, Man M; Ding, Xuan; Leers, Steven A; Kim, Kang
2017-06-01
Ultrasound-induced thermal strain imaging (TSI) has been used successfully to identify lipid- and water-based tissues in atherosclerotic plaques in some research settings. However, TSI faces several challenges to be realized in clinics. These challenges include motion artifacts and displacement tracking accuracy, as well as limited heating capability, which contributes to low thermal strain signal-to-noise ratio, and a limited field of view. Our goal was to address the challenge in heating tissue in TSI. Current TSI systems use separate heating and imaging transducers, which require physical alignment of the heating and imaging beams and result in a bulky setup that limits in vivo operation. We evaluated a new design for heating beams that can be implemented on a linear array imaging transducer and can provide improved heating area and efficiency as compared with previous implementations. The heating beams designed were implemented with a clinical linear array imaging transducer connected to a research ultrasound platform. In vitro experiments using tissue-mimicking phantoms with no blood flow revealed that the new design resulted in an effective heating area of approximately 0.85 cm 2 and a 0.3°C temperature rise in 2 s of heating, which compared well with in silico finite-element simulations. With the new heating beams, TSI was found to be able to detect a lipid-mimicking rubber inclusion with a diameter of 1 cm from the water-based gelatin background, with a strain contrast of 2.3 (+0.14% strain in the rubber inclusion and -0.06% strain in the gelatin background). Lastly, lipid-based tissue in a 1-cm-diameter human carotid endarterectomy (CEA) sample was identified in good agreement with histology. Copyright © 2017 World Federation for Ultrasound in Medicine & Biology. Published by Elsevier Inc. All rights reserved.
Single-particle response function in finite nuclei
International Nuclear Information System (INIS)
Shlomo, S.; Texas A and M Univ., College Station
1982-01-01
I derive expressions for the single-particle response (structure) function S(E, q) and its sum rule, (Pauli blocking factor) P(q) = ∫ dE S(E, q), in terms of the Wiqner transforms (WTs) of the single-particle wave functions and the scattering probe sigma(q, r) and discuss the semi-classical phase-space interpretation of the results. For sigma(q, r) = esup(iq x r), I derive simple expressions for S(E, q) and P(q) for finite nuclei within the harmonic-oscillator model and compare the results with the well-known results of the Fermi-gas model. (orig.)
Functions and requirements for single-shell tank leakage mitigation
International Nuclear Information System (INIS)
Cruse, J.M.
1994-01-01
This document provides the initial functions and requirements for the leakage mitigation mission applicable to past and potential future leakage from the Hanford Site's 149 single-shell high-level waste tanks. This mission is a part of the overall mission of the Westinghouse Hanford Company Tank Waste Remediation System division to remediate the tank waste in a safe and acceptable manner. Systems engineering principles are being applied to this effort. A Mission Analysis has been completed, this document reflects the next step in the systems engineering approach to decompose the mission into primary functions and requirements. The functions and requirements in this document apply to mitigative actions to be taken regarding below ground leaks from SST containment boundaries and the resulting soil contamination. Leakage mitigation is invoked in the TWRS Program in three fourth level functions: (1) Store Waste, (2) Retrieve Waste, and (3) Disposition Excess Facilities
Directory of Open Access Journals (Sweden)
T. J. Ma
2015-09-01
Full Text Available Three types of post-weld heat treatment (PWHT, i.e. solution treatment + primary aging + secondary aging (I, secondary aging (II, and primary aging + secondary aging (III, were applied to a single crystal nickel-based superalloy joint made with linear friction welding (LFW. The results show that the grains in the thermomechanically affected zone (TMAZ coarsen seriously and the primary γ' phase in the TMAZ precipitates unevenly after PWHT I. The primary γ' phase in the TMAZ and weld zone (WZ precipitates insufficiently and fine granular secondary γ' phase is observed in the matrix after PWHT II. After PWHT III, the primary γ' phase precipitates more sufficiently and evenly compared to PWHTs I and II. Moreover, the grains in the TMAZ have not coarsened seriously and fine granular secondary γ' phase is not found after PWHT III. PWHT III seems more suitable to the LFWed single crystal nickel-based superalloy joints when performing PWHT.
He, Xiaoying; Fang, Xia; Liao, Changrui; Wang, D N; Sun, Junqiang
2009-11-23
A simple linear cavity erbium-doped fiber laser based on a Fabry-Perot filter which consists of a pair of fiber Bragg gratings is proposed for tunable and switchable single-longitudinal-mode dual-wavelength operation. The single-longitudinal-mode is obtained by the saturable absorption of an unpumed erbium-doped fiber together with a narrow-band fiber Bragg grating. Under the high pump power (>166 mW) condition, the stable dual-wavelength oscillation with uniform amplitude can be realized by carefully adjusting the polarization controller in the cavity. Wavelength selection and switching are achieved by tuning the narrow-band fiber Bragg grating in the system. The spacing of the dual-wavelength can be selected at 0.20 nm (approximately 25.62 GHz), 0.22 nm (approximately 28.19 GHz) and 0.54 nm (approximately 69.19 GHz).
Catanzaro, Daniele; Ravi, Ramamoorthi; Schwartz, Russell
2013-01-23
Phylogeny estimation from aligned haplotype sequences has attracted more and more attention in the recent years due to its importance in analysis of many fine-scale genetic data. Its application fields range from medical research, to drug discovery, to epidemiology, to population dynamics. The literature on molecular phylogenetics proposes a number of criteria for selecting a phylogeny from among plausible alternatives. Usually, such criteria can be expressed by means of objective functions, and the phylogenies that optimize them are referred to as optimal. One of the most important estimation criteria is the parsimony which states that the optimal phylogeny T∗for a set H of n haplotype sequences over a common set of variable loci is the one that satisfies the following requirements: (i) it has the shortest length and (ii) it is such that, for each pair of distinct haplotypes hi,hj∈H, the sum of the edge weights belonging to the path from hi to hj in T∗ is not smaller than the observed number of changes between hi and hj. Finding the most parsimonious phylogeny for H involves solving an optimization problem, called the Most Parsimonious Phylogeny Estimation Problem (MPPEP), which is NP-hard in many of its versions. In this article we investigate a recent version of the MPPEP that arises when input data consist of single nucleotide polymorphism haplotypes extracted from a population of individuals on a common genomic region. Specifically, we explore the prospects for improving on the implicit enumeration strategy of implicit enumeration strategy used in previous work using a novel problem formulation and a series of strengthening valid inequalities and preliminary symmetry breaking constraints to more precisely bound the solution space and accelerate implicit enumeration of possible optimal phylogenies. We present the basic formulation and then introduce a series of provable valid constraints to reduce the solution space. We then prove that these
Shilov, Georgi E
1977-01-01
Covers determinants, linear spaces, systems of linear equations, linear functions of a vector argument, coordinate transformations, the canonical form of the matrix of a linear operator, bilinear and quadratic forms, Euclidean spaces, unitary spaces, quadratic forms in Euclidean and unitary spaces, finite-dimensional space. Problems with hints and answers.
Minati, Ludovico; Chiesa, Pietro; Tabarelli, Davide; D'Incerti, Ludovico; Jovicich, Jorge
2015-03-01
In this paper, the topographical relationship between functional connectivity (intended as inter-regional synchronization), spectral and non-linear dynamical properties across cortical areas of the healthy human brain is considered. Based upon functional MRI acquisitions of spontaneous activity during wakeful idleness, node degree maps are determined by thresholding the temporal correlation coefficient among all voxel pairs. In addition, for individual voxel time-series, the relative amplitude of low-frequency fluctuations and the correlation dimension (D2), determined with respect to Fourier amplitude and value distribution matched surrogate data, are measured. Across cortical areas, high node degree is associated with a shift towards lower frequency activity and, compared to surrogate data, clearer saturation to a lower correlation dimension, suggesting presence of non-linear structure. An attempt to recapitulate this relationship in a network of single-transistor oscillators is made, based on a diffusive ring (n = 90) with added long-distance links defining four extended hub regions. Similarly to the brain data, it is found that oscillators in the hub regions generate signals with larger low-frequency cycle amplitude fluctuations and clearer saturation to a lower correlation dimension compared to surrogates. The effect emerges more markedly close to criticality. The homology observed between the two systems despite profound differences in scale, coupling mechanism and dynamics appears noteworthy. These experimental results motivate further investigation into the heterogeneity of cortical non-linear dynamics in relation to connectivity and underline the ability for small networks of single-transistor oscillators to recreate collective phenomena arising in much more complex biological systems, potentially representing a future platform for modelling disease-related changes.
International Nuclear Information System (INIS)
Minati, Ludovico; Chiesa, Pietro; Tabarelli, Davide; Jovicich, Jorge; D'Incerti, Ludovico
2015-01-01
In this paper, the topographical relationship between functional connectivity (intended as inter-regional synchronization), spectral and non-linear dynamical properties across cortical areas of the healthy human brain is considered. Based upon functional MRI acquisitions of spontaneous activity during wakeful idleness, node degree maps are determined by thresholding the temporal correlation coefficient among all voxel pairs. In addition, for individual voxel time-series, the relative amplitude of low-frequency fluctuations and the correlation dimension (D 2 ), determined with respect to Fourier amplitude and value distribution matched surrogate data, are measured. Across cortical areas, high node degree is associated with a shift towards lower frequency activity and, compared to surrogate data, clearer saturation to a lower correlation dimension, suggesting presence of non-linear structure. An attempt to recapitulate this relationship in a network of single-transistor oscillators is made, based on a diffusive ring (n = 90) with added long-distance links defining four extended hub regions. Similarly to the brain data, it is found that oscillators in the hub regions generate signals with larger low-frequency cycle amplitude fluctuations and clearer saturation to a lower correlation dimension compared to surrogates. The effect emerges more markedly close to criticality. The homology observed between the two systems despite profound differences in scale, coupling mechanism and dynamics appears noteworthy. These experimental results motivate further investigation into the heterogeneity of cortical non-linear dynamics in relation to connectivity and underline the ability for small networks of single-transistor oscillators to recreate collective phenomena arising in much more complex biological systems, potentially representing a future platform for modelling disease-related changes
Hu, L; Liang, M; Mouraux, A; Wise, R G; Hu, Y; Iannetti, G D
2011-12-01
Across-trial averaging is a widely used approach to enhance the signal-to-noise ratio (SNR) of event-related potentials (ERPs). However, across-trial variability of ERP latency and amplitude may contain physiologically relevant information that is lost by across-trial averaging. Hence, we aimed to develop a novel method that uses 1) wavelet filtering (WF) to enhance the SNR of ERPs and 2) a multiple linear regression with a dispersion term (MLR(d)) that takes into account shape distortions to estimate the single-trial latency and amplitude of ERP peaks. Using simulated ERP data sets containing different levels of noise, we provide evidence that, compared with other approaches, the proposed WF+MLR(d) method yields the most accurate estimate of single-trial ERP features. When applied to a real laser-evoked potential data set, the WF+MLR(d) approach provides reliable estimation of single-trial latency, amplitude, and morphology of ERPs and thereby allows performing meaningful correlations at single-trial level. We obtained three main findings. First, WF significantly enhances the SNR of single-trial ERPs. Second, MLR(d) effectively captures and measures the variability in the morphology of single-trial ERPs, thus providing an accurate and unbiased estimate of their peak latency and amplitude. Third, intensity of pain perception significantly correlates with the single-trial estimates of N2 and P2 amplitude. These results indicate that WF+MLR(d) can be used to explore the dynamics between different ERP features, behavioral variables, and other neuroimaging measures of brain activity, thus providing new insights into the functional significance of the different brain processes underlying the brain responses to sensory stimuli.
Sparse generalized functional linear model for predicting remission status of depression patients.
Liu, Yashu; Nie, Zhi; Zhou, Jiayu; Farnum, Michael; Narayan, Vaibhav A; Wittenberg, Gayle; Ye, Jieping
2014-01-01
Complex diseases such as major depression affect people over time in complicated patterns. Longitudinal data analysis is thus crucial for understanding and prognosis of such diseases and has received considerable attention in the biomedical research community. Traditional classification and regression methods have been commonly applied in a simple (controlled) clinical setting with a small number of time points. However, these methods cannot be easily extended to the more general setting for longitudinal analysis, as they are not inherently built for time-dependent data. Functional regression, in contrast, is capable of identifying the relationship between features and outcomes along with time information by assuming features and/or outcomes as random functions over time rather than independent random variables. In this paper, we propose a novel sparse generalized functional linear model for the prediction of treatment remission status of the depression participants with longitudinal features. Compared to traditional functional regression models, our model enables high-dimensional learning, smoothness of functional coefficients, longitudinal feature selection and interpretable estimation of functional coefficients. Extensive experiments have been conducted on the Sequenced Treatment Alternatives to Relieve Depression (STAR*D) data set and the results show that the proposed sparse functional regression method achieves significantly higher prediction power than existing approaches.
Directory of Open Access Journals (Sweden)
Miguel Flores
2016-11-01
Full Text Available This work aims to classify the DNA sequences of healthy and malignant cancer respectively. For this, supervised and unsupervised classification methods from a functional context are used; i.e. each strand of DNA is an observation. The observations are discretized, for that reason different ways to represent these observations with functions are evaluated. In addition, an exploratory study is done: estimating the mean and variance of each functional type of cancer. For the unsupervised classification method, hierarchical clustering with different measures of functional distance is used. On the other hand, for the supervised classification method, a functional generalized linear model is used. For this model the first and second derivatives are used which are included as discriminating variables. It has been verified that one of the advantages of working in the functional context is to obtain a model to correctly classify cancers by 100%. For the implementation of the methods it has been used the fda.usc R package that includes all the techniques of functional data analysis used in this work. In addition, some that have been developed in recent decades. For more details of these techniques can be consulted Ramsay, J. O. and Silverman (2005 and Ferraty et al. (2006.
Saitow, Masaaki; Becker, Ute; Riplinger, Christoph; Valeev, Edward F.; Neese, Frank
2017-04-01
The Coupled-Cluster expansion, truncated after single and double excitations (CCSD), provides accurate and reliable molecular electronic wave functions and energies for many molecular systems around their equilibrium geometries. However, the high computational cost, which is well-known to scale as O(N6) with system size N, has limited its practical application to small systems consisting of not more than approximately 20-30 atoms. To overcome these limitations, low-order scaling approximations to CCSD have been intensively investigated over the past few years. In our previous work, we have shown that by combining the pair natural orbital (PNO) approach and the concept of orbital domains it is possible to achieve fully linear scaling CC implementations (DLPNO-CCSD and DLPNO-CCSD(T)) that recover around 99.9% of the total correlation energy [C. Riplinger et al., J. Chem. Phys. 144, 024109 (2016)]. The production level implementations of the DLPNO-CCSD and DLPNO-CCSD(T) methods were shown to be applicable to realistic systems composed of a few hundred atoms in a routine, black-box fashion on relatively modest hardware. In 2011, a reduced-scaling CCSD approach for high-spin open-shell unrestricted Hartree-Fock reference wave functions was proposed (UHF-LPNO-CCSD) [A. Hansen et al., J. Chem. Phys. 135, 214102 (2011)]. After a few years of experience with this method, a few shortcomings of UHF-LPNO-CCSD were noticed that required a redesign of the method, which is the subject of this paper. To this end, we employ the high-spin open-shell variant of the N-electron valence perturbation theory formalism to define the initial guess wave function, and consequently also the open-shell PNOs. The new PNO ansatz properly converges to the closed-shell limit since all truncations and approximations have been made in strict analogy to the closed-shell case. Furthermore, given the fact that the formalism uses a single set of orbitals, only a single PNO integral transformation is
Energy Technology Data Exchange (ETDEWEB)
Sankar, D.; Menon, Vinay Raj; Sagayaraj, P. [Department of Physics, Loyola College, Chennai 600 034 (India); Madhavan, J., E-mail: jmadhavang@yahoo.co [Department of Physics, Loyola College, Chennai 600 034 (India)
2010-01-01
L-arginine dihydrofluoride of dimensions upto 15x10x9 mm{sup 3} was successfully grown by slow evaporation technique from aqueous solution. The crystal was characterized by X-ray diffractometry, Elemental analysis, FT-IR, UV-Vis-NIR spectroscopy, thermal and microhardness studies. The dielectric constant and dielectric loss of the crystal were studied as function of frequency. Photoconductivity studies were also carried out on the sample. Kurtz powder SHG measurement confirms the NLO property of the grown crystals.
Wrigley, Christopher James (Inventor); Hancock, Bruce R. (Inventor); Newton, Kenneth W. (Inventor); Cunningham, Thomas J. (Inventor)
2014-01-01
An analog-to-digital converter (ADC) converts pixel voltages from a CMOS image into a digital output. A voltage ramp generator generates a voltage ramp that has a linear first portion and a non-linear second portion. A digital output generator generates a digital output based on the voltage ramp, the pixel voltages, and comparator output from an array of comparators that compare the voltage ramp to the pixel voltages. A return lookup table linearizes the digital output values.
Directory of Open Access Journals (Sweden)
Il Young Song
2015-01-01
Full Text Available This paper focuses on estimation of a nonlinear function of state vector (NFS in discrete-time linear systems with time-delays and model uncertainties. The NFS represents a multivariate nonlinear function of state variables, which can indicate useful information of a target system for control. The optimal nonlinear estimator of an NFS (in mean square sense represents a function of the receding horizon estimate and its error covariance. The proposed receding horizon filter represents the standard Kalman filter with time-delays and special initial horizon conditions described by the Lyapunov-like equations. In general case to calculate an optimal estimator of an NFS we propose using the unscented transformation. Important class of polynomial NFS is considered in detail. In the case of polynomial NFS an optimal estimator has a closed-form computational procedure. The subsequent application of the proposed receding horizon filter and nonlinear estimator to a linear stochastic system with time-delays and uncertainties demonstrates their effectiveness.
Energy Technology Data Exchange (ETDEWEB)
Mandal, Parikshit [Department of Chemistry, Physical Chemistry Section, Visva Bharati University, Santiniketan, Birbhum 731 235, West Bengal (India); Ghosh, Manas [Department of Chemistry, Physical Chemistry Section, Visva Bharati University, Santiniketan, Birbhum 731 235, West Bengal (India)], E-mail: pcmg77@rediffmail.com
2008-09-01
We explore the pattern of frequency-dependent linear and non-linear optical (NLO) response of one electron quantum dots harmonically confined in two dimensions. For some fixed values of transverse magnetic field strength ({omega}{sub c}), and harmonic confinement potential ({omega}{sub 0}), the influence of effective mass (m*) of the system and the symmetry breaking anharmonic interaction on the frequency-dependent linear ({alpha}), and the first ({beta}), and second ({gamma}) NLO responses of the dot is computed through linear variational route. The investigation reveals interesting roles played by the anharmonic interaction and effective mass in modulating the response properties.
International Nuclear Information System (INIS)
Dehghan, Mehdi; Shakourifar, Mohammad; Hamidi, Asgar
2009-01-01
The purpose of this study is to implement Adomian-Pade (Modified Adomian-Pade) technique, which is a combination of Adomian decomposition method (Modified Adomian decomposition method) and Pade approximation, for solving linear and nonlinear systems of Volterra functional equations. The results obtained by using Adomian-Pade (Modified Adomian-Pade) technique, are compared to those obtained by using Adomian decomposition method (Modified Adomian decomposition method) alone. The numerical results, demonstrate that ADM-PADE (MADM-PADE) technique, gives the approximate solution with faster convergence rate and higher accuracy than using the standard ADM (MADM).
Electric light scattering from single-stranded DNA in linear polyacrylamide solutions.
Todorov, R; Starchev, K; Stoylov, S P
2001-01-01
The electric light scattering (ELS) of ssDNA (calf thymus, 10 kbp, 55 micrograms/mL) in denaturing polyacrylamide (PAA) solutions was studied as a function of applied sinusoidal electric field and polymer concentration. Electric fields of strengths up to 300 V/cm and of frequencies between 100 and 5000 Hz were applied. It was found that the ELS effect increases with the field strength and decreases at high frequencies. The dependence of the ELS effect of ssDNA on polymer concentration passes through a maximum at 1% PAA. The relaxation times of decay of the ELS effect increase with increasing polymer concentrations. It was demonstrated that ELS is a useful method for investigation of ssDNA behavior in the course of pulse-field electrophoresis in polymer solutions.
The non-linear relationship between body size and function in parrotfishes
Lokrantz, J.; Nyström, M.; Thyresson, M.; Johansson, C.
2008-12-01
Parrotfishes are a group of herbivores that play an important functional role in structuring benthic communities on coral reefs. Increasingly, these fish are being targeted by fishermen, and resultant declines in biomass and abundance may have severe consequences for the dynamics and regeneration of coral reefs. However, the impact of overfishing extends beyond declining fish stocks. It can also lead to demographic changes within species populations where mean body size is reduced. The effect of reduced mean body size on population dynamics is well described in literature but virtually no information exists on how this may influence important ecological functions. The study investigated how one important function, scraping (i.e., the capacity to remove algae and open up bare substratum for coral larval settlement), by three common species of parrotfishes ( Scarus niger, Chlorurus sordidus, and Chlorurus strongylocephalus) on coral reefs at Zanzibar (Tanzania) was influenced by the size of individual fishes. There was a non-linear relationship between body size and scraping function for all species examined, and impact through scraping was also found to increase markedly when fish reached a size of 15 20 cm. Thus, coral reefs which have a high abundance and biomass of parrotfish may nonetheless be functionally impaired if dominated by small-sized individuals. Reductions in mean body size within parrotfish populations could, therefore, have functional impacts on coral reefs that previously have been overlooked.
Noncovalent functionalization of single-walled carbon nanotubes.
Zhao, Yan-Li; Stoddart, J Fraser
2009-08-18
Single-walled carbon nanotubes (SWNTs) have attracted much attention on account of their potential to be transformed into new materials that can be employed to address a wide range of applications. The insolubility of the SWNTs in most solvents and the difficulties of handling these highly intractable carbon nanostructures, however, are restricting their real-life applications at the present time. To improve upon the properties of the SWNTs, low-cost and industrially feasible approaches to their modifications are constantly being sought by chemists and materials scientists. Together, they have shown that noncovalent functionalization of the SWNTs can do much to preserve the desired properties of the SWNTs while remarkably improving their solubilities. This Account describes recent advances in the design, synthesis, and characterization of SWNT hybrids and evaluates applications of these new hybrid materials based on noncovalently functionalized SWNTs. Their solubilization enables the characterization of these hybrids as well as the investigation of the properties of the SWNTs using solution-based techniques. Cognizant of the structural properties of the functional molecules on the SWNTs, we present some of the recent work carried out by ourselves and others under the umbrella of the following three subtopics: (i) aromatic small-molecule-based noncovalent functionalization, (ii) biomacromolecule-based noncovalent functionalization, and (iii) polymer-based noncovalent functionalization. Several examples for the applications of noncovalently functionalized SWNT hybrids in the fabrication of field-effect transistor (FET) devices, chemical sensors, molecular switch tunnel junctions (MSTJs), and photovoltaic devices are highlighted and discussed. The blossoming of new methods for the noncovalent functionalization of the SWNTs promises a new generation of SWNT hybrid-based integrated multifunctional sensors and devices, an outcome which is essential for the development of
From tomography to FWI with a single objective function
Alkhalifah, Tariq Ali
2013-06-10
Reflections in our seismic data induce serious nonlinear behavior in the objective function of full waveform inversion (FWI). Thus, without a good initial velocity model, that can produce the reflections within a cycle of the frequency used in the inversion, convergence to the solution becomes hard. Such velocity models are usually extracted from migration velocity analysis or traveltime tomography, among other means, that are not guaranteed to adhere to the FWI requirements. As such, we promote an objective function based on the misfit in the instantaneous traveltime between the observed and modeled data. This phase based attribute of the wavefield, along with its phase unwrapping features, provide a frequency dependent traveltime function. With strong damping of the of the synthetic, potentially low frequency, data, this attribute admits first arrival traveltime that could be compared with picked ones from the observed data, like in wave equation tomography. As we relax the damping on the synthetic and observed data, the objective function measures the misfit in the phase, however unwrapped in an FWI type inversion. It, thus, provides a single objective function and a natural transition from traveltime tomography to full waveform inversion. A Marmousi example demonstrates the effectiveness of the approach.
Non-linear optics for the final focus of the single-pass-collider
International Nuclear Information System (INIS)
Brown, K.L.; Spencer, J.E.
1981-02-01
The purpose of the final focus system (FFS) is to demagnify the beam envelope in the Collider arc lattice to a size suitable for beam collisions at the interaction region. The final spot size is determined by the beam emittance, the beta function β* at the IR, the momentum spread in the beam, and the quality of the FFS optics. In particular, if the focusing system is not chromatically corrected, the momentum dispersion in the beam can lead to a substantial degradation in the quality of the final focus. The objective is to design a FFS for 50 GeV/c within approx. 100 meters having an IR spot size sigma/sub xy/ of approximately 2 μm for a beam emittance of epsilon = 3 x 10 -10 m-rad and a momentum spread of delta = +-0.5%. This requires a β/sub x,y/ equal to or less than 1 cm. This report considers the problems encountered in the design of a final focus system that will reliably provide the desired beam size for collisions
Takanabe, Akifumi; Tanaka, Masahito; Taniguchi, Atsuo; Yamanaka, Hisashi; Asahi, Toru
2014-07-01
To improve our ability to identify single crystals causing arthritis, we have developed a practical measurement system of polarized light microscopy called advanced compensated polarized light microscopy (A-CPLM). The A-CPLM system is constructed by employing a conventional phase retardation plate, an optical fibre and a charge-coupled device spectrometer in a polarized light microscope. We applied the A-CPLM system to measure linear birefringence (LB) in the visible region, which is an optical anisotropic property, for tiny single crystals causing arthritis, i.e. monosodium urate monohydrate (MSUM) and calcium pyrophosphate dihydrate (CPPD). The A-CPLM system performance was evaluated by comparing the obtained experimental data using the A-CPLM system with (i) literature data for a standard sample, MgF2, and (ii) experimental data obtained using an established optical method, high-accuracy universal polarimeter, for the MSUM. The A-CPLM system was found to be applicable for measuring the LB spectra of the single crystals of MSUM and CPPD, which cause arthritis, in the visible regions. We quantitatively reveal the large difference in LB between MSUM and CPPD crystals. These results demonstrate the usefulness of the A-CPLM system for distinguishing the crystals causing arthritis.
Density functional response approach for the linear and nonlinear electric properties of molecules
Sophy, K. B.; Pal, Sourav
2003-06-01
This is a preliminary study toward implementation of analytic density functional response approach for molecules to obtain linear and nonlinear electric properties. The Kohn-Sham framework has been used with Gaussian basis sets. We propose a fully variational approach to obtain the response of electronic density in terms of the atomic orbital basis (contracted Gaussians). As a first step, this derivative of the Kohn-Sham operator is obtained by a finite field method using five different values of electric field. Using this, we obtain the energy derivatives up to third order using fully analytic expressions. We calculate the dipole moment, polarizability, and hyperpolarizability of the hydrogen fluoride (HF) molecule as a test case using different exchange-correlation functionals and basis sets within the present methodology. We also explore the feasibility of this response approach by studying the properties of the HF molecule for different H-F distances.
Optimizing Linear Functions with Randomized Search Heuristics - The Robustness of Mutation
DEFF Research Database (Denmark)
Witt, Carsten
2012-01-01
, which imply expected polynomial optimization time as long as p=O((ln n)/n) and which are tight if p=c/n for a constant c. As a consequence, the standard mutation probability p=1/n is optimal for all linear functions, and the (1+1) EA is found to be an optimal mutation-based algorithm. Furthermore......The analysis of randomized search heuristics on classes of functions is fundamental for the understanding of the underlying stochastic process and the development of suitable proof techniques. Recently, remarkable progress has been made in bounding the expected optimization time of the simple (1......, the algorithm turns out to be surprisingly robust since large neighborhood explored by the mutation operator does not disrupt the search....
Cubic Function-Based Bayesian Dynamic Linear Prediction Approach of Bridge Extreme Stress
Directory of Open Access Journals (Sweden)
Yuefei Liu
2017-01-01
Full Text Available In structural health monitoring (SHM field, the structural stress prediction and assessment are the research bottleneck. To reasonably and dynamically predict structural extreme stress based on the time-variant monitored data, the objectives of this paper are to present (a cubic function-based Bayesian dynamic linear models (BDLM about monitored extreme stress, (b choosing method of optimum probability distribution functions about initial stress state, (c monitoring mechanism of the optimum BDLM, and (d an effective way of taking advantage of BDLM to incorporate the time-variant monitored data into structural extreme stress prediction. The monitored data of an existing bridge is adopted to illustrate the feasibility and application of the proposed models and procedures.
Gene Level Meta-Analysis of Quantitative Traits by Functional Linear Models.
Fan, Ruzong; Wang, Yifan; Boehnke, Michael; Chen, Wei; Li, Yun; Ren, Haobo; Lobach, Iryna; Xiong, Momiao
2015-08-01
Meta-analysis of genetic data must account for differences among studies including study designs, markers genotyped, and covariates. The effects of genetic variants may differ from population to population, i.e., heterogeneity. Thus, meta-analysis of combining data of multiple studies is difficult. Novel statistical methods for meta-analysis are needed. In this article, functional linear models are developed for meta-analyses that connect genetic data to quantitative traits, adjusting for covariates. The models can be used to analyze rare variants, common variants, or a combination of the two. Both likelihood-ratio test (LRT) and F-distributed statistics are introduced to test association between quantitative traits and multiple variants in one genetic region. Extensive simulations are performed to evaluate empirical type I error rates and power performance of the proposed tests. The proposed LRT and F-distributed statistics control the type I error very well and have higher power than the existing methods of the meta-analysis sequence kernel association test (MetaSKAT). We analyze four blood lipid levels in data from a meta-analysis of eight European studies. The proposed methods detect more significant associations than MetaSKAT and the P-values of the proposed LRT and F-distributed statistics are usually much smaller than those of MetaSKAT. The functional linear models and related test statistics can be useful in whole-genome and whole-exome association studies. Copyright © 2015 by the Genetics Society of America.
Directory of Open Access Journals (Sweden)
Tai-Yin Chiu
Full Text Available The ability to engineer synthetic systems in the biochemical context is constantly being improved and has a profound societal impact. Linear system design is one of the most pervasive methods applied in control tasks, and its biochemical realization has been proposed by Oishi and Klavins and advanced further in recent years. However, several technical issues remain unsolved. Specifically, the design process is not fully automated from specification at the transfer function level, systems once designed often lack dynamic adaptivity to environmental changes, matching rate constants of reactions is not always possible, and implementation may be approximative and greatly deviate from the specifications. Building upon the work of Oishi and Klavins, this paper overcomes these issues by introducing a design flow that transforms a transfer-function specification of a linear system into a set of chemical reactions, whose input-output response precisely conforms to the specification. This system is implementable using the DNA strand displacement technique. The underlying configurability is embedded into primitive components and template modules, and thus the entire system is adaptive. Simulation of DNA strand displacement implementation confirmed the feasibility and superiority of the proposed synthesis flow.
Non-Linear Back-propagation: Doing Back-Propagation withoutDerivatives of the Activation Function
DEFF Research Database (Denmark)
Hertz, John; Krogh, Anders Stærmose; Lautrup, Benny
1997-01-01
The conventional linear back-propagation algorithm is replaced by a non-linear version, which avoids the necessity for calculating the derivative of the activation function. This may be exploited in hardware realizations of neural processors. In this paper we derive the non-linear back-propagatio......-propagation algorithms in the framework of recurrent back-propagation and present some numerical simulations of feed-forward networks on the NetTalk problem. A discussion of implementation in analog VLSI electronics concludes the paper.......The conventional linear back-propagation algorithm is replaced by a non-linear version, which avoids the necessity for calculating the derivative of the activation function. This may be exploited in hardware realizations of neural processors. In this paper we derive the non-linear back...
Photophysics of covalently functionalized single wall carbon nanotubes with verteporfin
Staicu, Angela; Smarandache, Adriana; Pascu, Alexandru; Pascu, Mihail Lucian
2017-09-01
Covalently functionalized single wall carbon nanotubes (SWCNT) with the photosensitizer verteporfin (VP) were synthesized and studied. Photophysical properties of the obtained compounds like optical absorption, laser-induced fluorescence and generated singlet oxygen were investigated. In order to highlight the features of the conjugated compound, its photophysical characteristics were compared with those of the mixtures of the initial components. The optical absorption data evidenced a compound that combines features of the primary SWCNTs and VP. This is the also the case of the laser induced fluorescence of the synthesized product. Moreover, fluorescence quantum yield (Φf) of the compound (Φf = 2.4%) is smaller than for the mixture of SWCNT and VP in (Φf = 3.2%). The behavior is expected, because linked VP (carrying the fluorescent moiety) transfers easier a part of its excitation energy to the SWCNT in the covalent structure. Relative to the quantum yield of singlet oxygen generation (ΦΔ) by Methylene Blue, it was found that the ΦΔ for the conjugated VP-SWCNT is 51% while for the mixture ΦΔ is 23%. The results indicate covalently functionalized single walled carbon nanotubes with verteporfin as potential compounds of interest in targeted drug delivery and photodynamic therapy.
Bunch-shape monitor for a picosecond single-bunch beam of a 35 MeV electron linear accelerator
International Nuclear Information System (INIS)
Hosono, Yoneichi; Nakazawa, Masaharu; Iguchi, Tetsuo
1995-01-01
A non-interactive-type bunch-shape and beam intensity monitor for a 35 MeV electron linear accelerator (linac) has been developed. The monitor consists of an electric SMA-type connector and an Al pipe of 50 mm inner diameter. Test measurements of the present monitor have been made under the conditions of the accelerated charges of lower than 27 nC/pulse and the pulse width ranging from 6 to 30 ps (Full Width at Half Maximum). The results show that the present monitor is applicable to bunch-shape measurement of the picosecond single-bunch beam. The monitor output is also found to be proportional to the beam intensity of more than 0.05 nC/pulse. (author)
Catanzaro, Daniele; Shackney, Stanley E; Schaffer, Alejandro A; Schwartz, Russell
2016-01-01
Ductal Carcinoma In Situ (DCIS) is a precursor lesion of Invasive Ductal Carcinoma (IDC) of the breast. Investigating its temporal progression could provide fundamental new insights for the development of better diagnostic tools to predict which cases of DCIS will progress to IDC. We investigate the problem of reconstructing a plausible progression from single-cell sampled data of an individual with synchronous DCIS and IDC. Specifically, by using a number of assumptions derived from the observation of cellular atypia occurring in IDC, we design a possible predictive model using integer linear programming (ILP). Computational experiments carried out on a preexisting data set of 13 patients with simultaneous DCIS and IDC show that the corresponding predicted progression models are classifiable into categories having specific evolutionary characteristics. The approach provides new insights into mechanisms of clonal progression in breast cancers and helps illustrate the power of the ILP approach for similar problems in reconstructing tumor evolution scenarios under complex sets of constraints.
International Nuclear Information System (INIS)
Nielsen, S.P.; Moeller, M.L.; Trap-Jensen, J.
1977-01-01
A new method of combined serial scintigraphy and renography, using a scintillation camera and /sup 99m/Tc-DTPA is evaluated. Renographic curves, corresponding to light-pen ''areas of interest'' over the renal parenchyma, were processed. ''Blood-background'' curves were recorded from an external detector over the temporal region of the head and also from an ''area of interest'' corresponding to the aorta and inferior vena cava. The uptake phase of the renogram was always linear. The sum of the slopes of the uptake phase of both kidneys correlated well with the measured glomerular filtration rate in 25 patients with renal insufficiency of various degrees. Single-kidney function estimated from the slopes correlated reasonably well with single-kidney function estimated from 131 I-Hippuran renography with external detectors. The method described minimizes errors in the estimation of single-kidney function, and both anatomic and functional information is obtained
Ouyang, Wei; Mao, Weijian
2018-03-01
An asymptotic quadratic true-amplitude inversion method for isotropic elastic P waves is proposed to invert medium parameters. The multicomponent P-wave scattered wavefield is computed based on a forward relationship using second-order Born approximation and corresponding high-frequency ray theoretical methods. Within the local double scattering mechanism, the P-wave transmission factors are elaborately calculated, which results in the radiation pattern for P-waves scattering being a quadratic combination of the density and Lamé's moduli perturbation parameters. We further express the elastic P-wave scattered wavefield in a form of generalized Radon transform (GRT). After introducing classical backprojection operators, we obtain an approximate solution of the inverse problem by solving a quadratic non-linear system. Numerical tests with synthetic data computed by finite-differences scheme demonstrate that our quadratic inversion can accurately invert perturbation parameters for strong perturbations, compared with the P-wave single-scattering linear inversion method. Although our inversion strategy here is only syncretized with P-wave scattering, it can be extended to invert multicomponent elastic data containing both P-wave and S-wave information.
International Nuclear Information System (INIS)
Feng Ting; Yan Feng-Ping; Li Qi; Peng Wan-Jing; Feng Su-Chun; Wen Xiao-Dong; Tan Si-Yu; Liu Peng
2012-01-01
We propose a stable and high optical signal-to-noise ratio (OSNR) compound linear-cavity single-longitudinal-mode (SLM) erbium-doped silica fiber laser. It consists of three uniform fiber Bragg gratings (FBGs) and two fiber couplers to form a simple asymmetric four-cavity structure to select the longitudinal mode. The stable SLM operation at the wavelength of 1544.053 nm with a 3 dB bandwidth of 0.014 nm and an OSNR of ∼60 dB was verified experimentally. Under laboratory conditions, a power fluctuation performance of less than 0.05 dB for 5 h and wavelength variation of less than 0.01 nm for about 150 min is demonstrated. Finally, the characteristic of laser output power as a function of pump power is investigated. The proposed system provides a simple and cost-effective approach to realize a stable SLM fiber laser
International Nuclear Information System (INIS)
Schroeder, J. W. R.; Skiff, F.; Howes, G. G.; Kletzing, C. A.; Carter, T. A.; Dorfman, S.
2015-01-01
Wave propagation can be an accurate method for determining material properties. High frequency whistler mode waves (0.7 < ω/|Ω ce | < 1) in an overdense plasma (ω pe > |Ω ce |) are damped primarily by Doppler-shifted electron cyclotron resonance. A kinetic description of whistler mode propagation parallel to the background magnetic field shows that damping is proportional to the parallel electron distribution function. This property enables an experimental determination of the parallel electron distribution function using a measurement of whistler mode wave absorption. The whistler mode wave absorption diagnostic uses this technique on UCLA’s Large Plasma Device (LaPD) to measure the distribution of high energy electrons (5 − 10v te ) with 0.1% precision. The accuracy is limited by systematic effects that need to be considered carefully. Ongoing research uses this diagnostic to investigate the effect of inertial Alfvén waves on the electron distribution function. Results presented here verify experimentally the linear effects of inertial Alfvén waves on the reduced electron distribution function, a necessary step before nonlinear physics can be tested. Ongoing experiments with the whistler mode wave absorption diagnostic are making progress toward the first direct detection of electrons nonlinearly accelerated by inertial Alfvén waves, a process believed to play an important role in auroral generation
Kano, Masayuki; Hanari, Naoyuki; Gunji, Hisashi; Hayano, Koichi; Hayashi, Hideki; Matsubara, Hisahiro
2017-01-01
Anastomosis is one of the basic skills of a gastrointestinal surgeon. Stapling devices are widely used because stapled anastomosis (SA) can shorten operation times. Antiperistaltic stapled side-to-side anastomosis (SSSA) using linear staplers is a popular SA technique that is often referred to as "functional end-to-end anastomosis (FEEA)." The term "FEEA" has spread without any definite validation of its "function." The aim of this review is to show the heterogeneity of SA and conventional hand-sewn end-to-end anastomosis (HEEA) and to advocate the renaming of "FEEA." We conducted a narrative review of the literature on SSSA. We reviewed the literature on ileocolic and small intestinal anastomosis in colonic cancer, Crohn's disease and ileostomy closure due to the simplicity of the technique. The superiority of SSSA in comparison to HEEA has been demonstrated in previous clinical studies concerning gastrointestinal anastomosis. Additionally, experimental studies have shown the differences between the two anastomotic techniques on peristalsis and the intestinal bacteria at the anastomotic site. SSSA and HEEA affect the postoperative clinical outcome, electrophysiological peristalsis, and bacteriology in different manners; no current studies have shown the functional equality of SSSA and HEEA. However, the use of the terms "functional end-to-end anastomosis" and/or "FEEA" could cause confusion for surgeons and researchers and should therefore be avoided.
Non-linearity of the collagen triple helix in solution and implications for collagen function.
Walker, Kenneth T; Nan, Ruodan; Wright, David W; Gor, Jayesh; Bishop, Anthony C; Makhatadze, George I; Brodsky, Barbara; Perkins, Stephen J
2017-06-16
Collagen adopts a characteristic supercoiled triple helical conformation which requires a repeating (Xaa-Yaa-Gly) n sequence. Despite the abundance of collagen, a combined experimental and atomistic modelling approach has not so far quantitated the degree of flexibility seen experimentally in the solution structures of collagen triple helices. To address this question, we report an experimental study on the flexibility of varying lengths of collagen triple helical peptides, composed of six, eight, ten and twelve repeats of the most stable Pro-Hyp-Gly (POG) units. In addition, one unblocked peptide, (POG) 10unblocked , was compared with the blocked (POG) 10 as a control for the significance of end effects. Complementary analytical ultracentrifugation and synchrotron small angle X-ray scattering data showed that the conformations of the longer triple helical peptides were not well explained by a linear structure derived from crystallography. To interpret these data, molecular dynamics simulations were used to generate 50 000 physically realistic collagen structures for each of the helices. These structures were fitted against their respective scattering data to reveal the best fitting structures from this large ensemble of possible helix structures. This curve fitting confirmed a small degree of non-linearity to exist in these best fit triple helices, with the degree of bending approximated as 4-17° from linearity. Our results open the way for further studies of other collagen triple helices with different sequences and stabilities in order to clarify the role of molecular rigidity and flexibility in collagen extracellular and immune function and disease. © 2017 The Author(s).
From Protein Structure to Function via Single Crystal Optical Spectroscopy
Directory of Open Access Journals (Sweden)
Luca eRonda
2015-04-01
Full Text Available The more than 100.000 protein structures determined by X-ray crystallography provide a wealth of information for the characterization of biological processes at the molecular level. However, several crystallographic artifacts, including conformational selection, crystallization conditions and radiation damages, may affect the quality and the interpretation of the electron density map, thus limiting the relevance of structure determinations. Moreover, for most of these structures no functional data have been obtained in the crystalline state, thus posing serious questions on their validity in the inference for protein mechanisms. In order to solve these issues, spectroscopic methods have been applied for the determination of equilibrium and kinetic properties of proteins in the crystalline state. These methods are UV-vis spectrophotometry, spectrofluorimetry, IR, EPR, Raman and resonance Raman spectroscopy. Some of these approaches have been implemented with on-line instruments at X-ray synchrotron beamlines. Here, we provide an overview of investigations predominantly carried out in our laboratory by single crystal polarized absorption UV-vis microspectrophotometry, the most applied technique for the functional characterization of proteins in the crystalline state. Studies on hemoglobins, pyridoxal 5’-phosphate dependent enzymes and green fluorescent protein in the crystalline state have addressed key biological issues, leading to either straightforward structure-function correlations or limitations to structure-based mechanisms.
RIA-analysis by means of non-linearized response functions
International Nuclear Information System (INIS)
Marbach, P.; Goetz, U.; Vetaeu, J.P.; Wagner, H.
1977-01-01
In this paper we present a new mathematical model for curve-fitting in radioimmunoassay (RIA) by means of non-linearized response function. The computer program developed is applicable to any protein-binding assay performed to present and is demonstrated together with a RIA for rat-growth hormone. This RIA is sensitive to 2 ng/ml, reproducible and shows no cross-reaction, particularly with prolactin. The assay is performed on the modified automatic module system RIA-E 6,000. This system, which is especially designed for a high throughput of samples, was modified such that the filtration unit is replaced by a centrifugation step, which allows the use of a conventional gamma-counter. (orig.) [de
Linear Stability Analysis of a Collisionless Distribution Function for the Force-Free Harris Sheet
Wilson, Fiona; Neukirch, Thomas
2013-04-01
A discussion is presented of the first linear stability analysis of the collisionless distribution function recently found by Harrison and Neukirch for the force-free Harris sheet (Physical Review Letters 102, 135003, 2009). Macroscopic instabilities are considered, and the perturbations are assumed to be two-dimensional only. The stability analysis is based on the technique of integration over unperturbed orbits. Similarly to the Harris sheet case (Nuovo Cimento, 23:115, 1962), this is only possible by using approximations to the exact orbits, which are unknown. Furthermore, the approximations for the Harris sheet case cannot be used for the force-free Harris sheet, and so new techniques have to be developed in order to make analytical progress. In addition to the full problem, the long wavelength limit is considered, and the results of the two cases are compared. The dependence of the stability on various equilibrium parameters is investigated.
Kaoui, Fawzi; Rocca, Dario
2016-01-01
A new approach was recently presented to compute correlation energies within the random phase approximation using Lanczos chains and an optimal basis set (Rocca 2014 J. Chem. Phys. 140 18A501). This novel method avoids the explicit calculation of conduction states and represents linear response functions on a compact auxiliary basis set obtained from the diagonalization of an approximate dielectric matrix that contains only the kinetic energy contribution. Here, we extend this formalism, originally implemented for molecular systems, to treat periodic solids. In particular, the approximate dielectric matrix used to build the auxiliary basis set is generalized to avoid unphysical negative gaps, that make the model inefficient. The numerical convergence of the method is discussed and the accuracy is demonstrated considering a set including three covalently bonded (C, Si, and SiC) and three weakly bonded (Ne, Ar, and Kr) solids.
Basic method for reduction of error in ordinary approximations of the non-linear functions
International Nuclear Information System (INIS)
Amanullah
2006-01-01
In this research article certain conditions of the infinite ordered nonlinear function with some terms have been determined and defined. Ordinary method of approximation has been analyzed with an example. It has been shown that to decrease nonlinear error order of approximation needs to be increased. Consequently non-linearity of higher order involves in the differential equations and hence the problem of integration arises again. It has been proposed to fix the order of approximation and decrease the error. For the improvement of an ordinary approximation the basic principle underlying its improvement has been discussed. For the reduction of error of an ordinary approximation a general expression has been given in which the nonlinear error has been distributed uniformly. In the given example error of initial ordinary approximation has been decreased more than 63 % . (author)
Tight Bounds on the Optimization Time of a Randomized Search Heuristic on Linear Functions
DEFF Research Database (Denmark)
Witt, Carsten
2013-01-01
The analysis of randomized search heuristics on classes of functions is fundamental to the understanding of the underlying stochastic process and the development of suitable proof techniques. Recently, remarkable progress has been made in bounding the expected optimization time of a simple evolut...... is found to be an optimal mutation-based algorithm. Furthermore, the algorithm turns out to be surprisingly robust since the large neighbourhood explored by the mutation operator does not disrupt the search.......The analysis of randomized search heuristics on classes of functions is fundamental to the understanding of the underlying stochastic process and the development of suitable proof techniques. Recently, remarkable progress has been made in bounding the expected optimization time of a simple...... evolutionary algorithm, called (1+1) EA, on the class of linear functions. We improve the previously best known bound in this setting from (1.39+o(1))en ln n to en ln n+O(n) in expectation and with high probability, which is tight up to lower-order terms. Moreover, upper and lower bounds for arbitrary mutation...
Directory of Open Access Journals (Sweden)
WenJun Zhang
2017-09-01
Full Text Available In present study I used the data from CHM-DATA, the interactive database of 1127 Chinese herbal medicines. Canonical correlation functions were determined for taste attribute class (7 taste attributes, medicinal property class (5 medicinal properties, chemical composition class (22 chemical composition categories, meridians and colleterals class (12 meridians and colleterals, and medicinal function class (77 medicinal functions. Linear eignmodels were also developed for Chinese herbal medicines. Theoretically the attribute values of any Chinese herbal medicines meet the corresponding linear eignmodel. Matlab codes for canonical correlation analysis and linear eignmodel were given. Finally, the canonical correlation network for attribute classes of Chinese herbal medicines was constructed.
Park, J. J.
2017-12-01
Sheared Layers in the Continental Crust: Nonlinear and Linearized inversion for Ps receiver functions Jeffrey Park, Yale University The interpretation of seismic receiver functions (RFs) in terms of isotropic and anisotropic layered structure can be complex. The relationship between structure and body-wave scattering is nonlinear. The anisotropy can involve more parameters than the observations can readily constrain. Finally, reflectivity-predicted layer reverberations are often not prominent in data, so that nonlinear waveform inversion can search in vain to match ghost signals. Multiple-taper correlation (MTC) receiver functions have uncertainties in the frequency domain that follow Gaussian statistics [Park and Levin, 2016a], so grid-searches for the best-fitting collections of interfaces can be performed rapidly to minimize weighted misfit variance. Tests for layer-reverberations can be performed in the frequency domain without reflectivity calculations, allowing flexible modelling of weak, but nonzero, reverberations. Park and Levin [2016b] linearized the hybridization of P and S body waves in an anisotropic layer to predict first-order Ps conversion amplitudes at crust and mantle interfaces. In an anisotropic layer, the P wave acquires small SV and SH components. To ensure continuity of displacement and traction at the top and bottom boundaries of the layer, shear waves are generated. Assuming hexagonal symmetry with an arbitrary symmetry axis, theory confirms the empirical stacking trick of phase-shifting transverse RFs by 90 degrees in back-azimuth [Shiomi and Park, 2008; Schulte-Pelkum and Mahan, 2014] to enhance 2-lobed and 4-lobed harmonic variation. Ps scattering is generated by sharp interfaces, so that RFs resemble the first derivative of the model. MTC RFs in the frequency domain can be manipulated to obtain a first-order reconstruction of the layered anisotropy, under the above modeling constraints and neglecting reverberations. Examples from long
Savizi, Iman Shahidi Pour
2011-04-01
Specific adsorption of anions to electrode surfaces may alter the rates of electrocatalytic reactions. Density functional theory (DFT) methods are used to predict the adsorption free energy of acetate and phosphate anions as a function of Pt(1 1 1) electrode potential. Four models of the electrode potential are used including a simple vacuum slab model, an applied electric field model with and without the inclusion of a solvating water bi-layer, and the double reference model. The linear sweep voltammogram (LSV) due to anion adsorption is simulated using the DFT results. The inclusion of solvation at the electrochemical interface is necessary for accurately predicting the adsorption peak position. The Langmuir model is sufficient for predicting the adsorption peak shape, indicating coverage effects are minor in altering the LSV for acetate and phosphate adsorption. Anion adsorption peak positions are determined for solution phase anion concentrations present in microbial fuel cells and microbial electrolysis cells and discussion is provided as to the impact of anion adsorption on oxygen reduction and hydrogen evolution reaction rates in these devices. © 2011 Elsevier Ltd. All rights reserved.
International Nuclear Information System (INIS)
Hedegård, Erik Donovan; Olsen, Jógvan Magnus Haugaard; Knecht, Stefan; Kongsted, Jacob; Jensen, Hans Jørgen Aagaard
2015-01-01
We present here the coupling of a polarizable embedding (PE) model to the recently developed multiconfiguration short-range density functional theory method (MC-srDFT), which can treat multiconfigurational systems with a simultaneous account for dynamical and static correlation effects. PE-MC-srDFT is designed to combine efficient treatment of complicated electronic structures with inclusion of effects from the surrounding environment. The environmental effects encompass classical electrostatic interactions as well as polarization of both the quantum region and the environment. Using response theory, molecular properties such as excitation energies and oscillator strengths can be obtained. The PE-MC-srDFT method and the additional terms required for linear response have been implemented in a development version of DALTON. To benchmark the PE-MC-srDFT approach against the literature data, we have investigated the low-lying electronic excitations of acetone and uracil, both immersed in water solution. The PE-MC-srDFT results are consistent and accurate, both in terms of the calculated solvent shift and, unlike regular PE-MCSCF, also with respect to the individual absolute excitation energies. To demonstrate the capabilities of PE-MC-srDFT, we also investigated the retinylidene Schiff base chromophore embedded in the channelrhodopsin protein. While using a much more compact reference wave function in terms of active space, our PE-MC-srDFT approach yields excitation energies comparable in quality to CASSCF/CASPT2 benchmarks
Hedegârd, Erik Donovan; Olsen, Jógvan Magnus Haugaard; Knecht, Stefan; Kongsted, Jacob; Jensen, Hans Jørgen Aagaard
2015-03-01
We present here the coupling of a polarizable embedding (PE) model to the recently developed multiconfiguration short-range density functional theory method (MC-srDFT), which can treat multiconfigurational systems with a simultaneous account for dynamical and static correlation effects. PE-MC-srDFT is designed to combine efficient treatment of complicated electronic structures with inclusion of effects from the surrounding environment. The environmental effects encompass classical electrostatic interactions as well as polarization of both the quantum region and the environment. Using response theory, molecular properties such as excitation energies and oscillator strengths can be obtained. The PE-MC-srDFT method and the additional terms required for linear response have been implemented in a development version of Dalton. To benchmark the PE-MC-srDFT approach against the literature data, we have investigated the low-lying electronic excitations of acetone and uracil, both immersed in water solution. The PE-MC-srDFT results are consistent and accurate, both in terms of the calculated solvent shift and, unlike regular PE-MCSCF, also with respect to the individual absolute excitation energies. To demonstrate the capabilities of PE-MC-srDFT, we also investigated the retinylidene Schiff base chromophore embedded in the channelrhodopsin protein. While using a much more compact reference wave function in terms of active space, our PE-MC-srDFT approach yields excitation energies comparable in quality to CASSCF/CASPT2 benchmarks.
Non-linear mapping for exploratory data analysis in functional genomics
Directory of Open Access Journals (Sweden)
Chesneau Alban
2005-01-01
Full Text Available Abstract Background Several supervised and unsupervised learning tools are available to classify functional genomics data. However, relatively less attention has been given to exploratory, visualisation-driven approaches. Such approaches should satisfy the following factors: Support for intuitive cluster visualisation, user-friendly and robust application, computational efficiency and generation of biologically meaningful outcomes. This research assesses a relaxation method for non-linear mapping that addresses these concerns. Its applications to gene expression and protein-protein interaction data analyses are investigated Results Publicly available expression data originating from leukaemia, round blue-cell tumours and Parkinson disease studies were analysed. The method distinguished relevant clusters and critical analysis areas. The system does not require assumptions about the inherent class structure of the data, its mapping process is controlled by only one parameter and the resulting transformations offer intuitive, meaningful visual displays. Comparisons with traditional mapping models are presented. As a way of promoting potential, alternative applications of the methodology presented, an example of exploratory data analysis of interactome networks is illustrated. Data from the C. elegans interactome were analysed. Results suggest that this method might represent an effective solution for detecting key network hubs and for clustering biologically meaningful groups of proteins. Conclusion A relaxation method for non-linear mapping provided the basis for visualisation-driven analyses using different types of data. This study indicates that such a system may represent a user-friendly and robust approach to exploratory data analysis. It may allow users to gain better insights into the underlying data structure, detect potential outliers and assess assumptions about the cluster composition of the data.
21 CFR 870.1435 - Single-function, preprogrammed diagnostic computer.
2010-04-01
... 21 Food and Drugs 8 2010-04-01 2010-04-01 false Single-function, preprogrammed diagnostic computer... Single-function, preprogrammed diagnostic computer. (a) Identification. A single-function, preprogrammed diagnostic computer is a hard-wired computer that calculates a specific physiological or blood-flow parameter...
Stefano Filho, Carlos A; Attux, Romis; Castellano, Gabriela
2017-01-01
Hands motor imagery (MI) has been reported to alter synchronization patterns amongst neurons, yielding variations in the mu and beta bands' power spectral density (PSD) of the electroencephalography (EEG) signal. These alterations have been used in the field of brain-computer interfaces (BCI), in an attempt to assign distinct MI tasks to commands of such a system. Recent studies have highlighted that information may be missing if knowledge about brain functional connectivity is not considered. In this work, we modeled the brain as a graph in which each EEG electrode represents a node. Our goal was to understand if there exists any linear correlation between variations in the synchronization patterns-that is, variations in the PSD of mu and beta bands-induced by MI and alterations in the corresponding functional networks. Moreover, we (1) explored the feasibility of using functional connectivity parameters as features for a classifier in the context of an MI-BCI; (2) investigated three different types of feature selection (FS) techniques; and (3) compared our approach to a more traditional method using the signal PSD as classifier inputs. Ten healthy subjects participated in this study. We observed significant correlations ( p classification, with mean accuracies of (90 ± 8)% and (87 ± 7)% for the mu and beta band, respectively, versus (83 ± 8)% and (83 ± 7)% for the same bands for the graph method. Moreover, the number of features for the graph method was considerably larger. However, results for both methods were relatively close, and even overlapped when the uncertainties of the accuracy rates were considered. Further investigation regarding a careful exploration of other graph metrics may provide better alternatives.
Canary, Jana D; Blizzard, Leigh; Barry, Ronald P; Hosmer, David W; Quinn, Stephen J
2016-05-01
Generalized linear models (GLM) with a canonical logit link function are the primary modeling technique used to relate a binary outcome to predictor variables. However, noncanonical links can offer more flexibility, producing convenient analytical quantities (e.g., probit GLMs in toxicology) and desired measures of effect (e.g., relative risk from log GLMs). Many summary goodness-of-fit (GOF) statistics exist for logistic GLM. Their properties make the development of GOF statistics relatively straightforward, but it can be more difficult under noncanonical links. Although GOF tests for logistic GLM with continuous covariates (GLMCC) have been applied to GLMCCs with log links, we know of no GOF tests in the literature specifically developed for GLMCCs that can be applied regardless of link function chosen. We generalize the Tsiatis GOF statistic originally developed for logistic GLMCCs, (TG), so that it can be applied under any link function. Further, we show that the algebraically related Hosmer-Lemeshow (HL) and Pigeon-Heyse (J(2) ) statistics can be applied directly. In a simulation study, TG, HL, and J(2) were used to evaluate the fit of probit, log-log, complementary log-log, and log models, all calculated with a common grouping method. The TG statistic consistently maintained Type I error rates, while those of HL and J(2) were often lower than expected if terms with little influence were included. Generally, the statistics had similar power to detect an incorrect model. An exception occurred when a log GLMCC was incorrectly fit to data generated from a logistic GLMCC. In this case, TG had more power than HL or J(2) . © 2015 John Wiley & Sons Ltd/London School of Economics.
Patel, Paras R.; Na, Kyounghwan; Zhang, Huanan; Kozai, Takashi D. Y.; Kotov, Nicholas A.; Yoon, Euisik; Chestek, Cynthia A.
2016-01-01
Objective Single carbon fiber electrodes (d=8.4 μm) insulated with parylene-c and functionalized with PEDOT:pTS have been shown to record single unit activity but manual implantation of these devices with forceps can be difficult. Without an improvement in the insertion method any increase in the channel count by fabricating carbon fiber arrays would be impractical. In this study, we utilize a water soluble coating and structural backbones that allow us to create, implant, and record from fully functionalized arrays of carbon fibers with ~150 μm pitch. Approach Two approaches were tested for the insertion of carbon fiber arrays. The first method used a PEG coating that temporarily stiffened the fibers while leaving a small portion at the tip exposed. The small exposed portion (500 μm – 1 mm) readily penetrated the brain allowing for an insertion that did not require the handling of each fiber by forceps. The second method involved the fabrication of silicon support structures with individual shanks spaced 150 μm apart. Each shank consisted of a small groove that held an individual carbon fiber. Main results Our results showed that the PEG coating allowed for the chronic implantation of carbon fiber arrays in 5 rats with unit activity detected at 31 days post-implant. The silicon support structures recorded single unit activity in 3 acute rat surgeries. In one of those surgeries a stacked device with 3 layers of silicon support structures and carbon fibers was built and shown to readily insert into the brain with unit activity on select sites. Significance From these studies we have found that carbon fibers spaced at ~150 μm readily insert into the brain. This greatly increases the recording density of chronic neural probes and paves the way for even higher density devices that have a minimal scarring response. PMID:26035638
Akram, Jubran; Eaton, David W.
2017-10-01
We discuss various aspects of 1D velocity-model building for application to microseismic data analysis. We generate simple synthetic example data using a widely used single linear array geometry. The synthetic data contain 30 sources with known locations for a reference model based on previous studies of the Barnett shale. We investigate several key factors that should be considered, including selection of the calibration technique, inclusion of a priori information such as lateral heterogeneity and parameter ranges, and choice of algorithm for travel time computations. For the source-receiver geometry considered here, hypocenter location errors (±6 m in X and ±12 m in Z) can result from differently calibrated models only and without including the errors in picked arrival times and polarization estimates. We find that the errors in hypocenter locations are reduced (±3 m in X and ±6 m in Z) when a model calibrated with multiple shots simultaneously is used. Using four different models (vertical fault, dipping layers, channels, and these effects combined), we demonstrate that systematic errors in hypocenter locations can result when a 1D layered model is used in lieu of a laterally heterogeneous subsurface. Finally, we show that event locations from a velocity model calibrated using direct-arrival times are more stable than from a model calibrated with first-arrival times.
International Nuclear Information System (INIS)
Saba, V.; Setayeshi, S.; Ghannadi-Maragheh, M.
2011-01-01
We have developed an algorithm for real-time detection and complete correction of the patient motion effects during single photon emission computed tomography. The algorithm is based on a linear prediction filter (LPC). The new prediction of projection data algorithm (PPDA) detects most motions-such as those of the head, legs, and hands-using comparison of the predicted and measured frame data. When the data acquisition for a specific frame is completed, the accuracy of the acquired data is evaluated by the PPDA. If patient motion is detected, the scanning procedure is stopped. After the patient rests in his or her true position, data acquisition is repeated only for the corrupted frame and the scanning procedure is continued. Various experimental data were used to validate the motion detection algorithm; on the whole, the proposed method was tested with approximately 100 test cases. The PPDA shows promising results. Using the PPDA enables us to prevent the scanner from collecting disturbed data during the scan and replaces them with motion-free data by real-time rescanning for the corrupted frames. As a result, the effects of patient motion is corrected in real time. (author)
Czech Academy of Sciences Publication Activity Database
Dilna, N.; Rontó, András
2010-01-01
Roč. 60, č. 3 (2010), s. 327-338 ISSN 0139-9918 R&D Projects: GA ČR(CZ) GA201/06/0254 Institutional research plan: CEZ:AV0Z10190503 Keywords : non-linear boundary value-problem * functional differential equation * non-local condition * unique solvability * differential inequality Subject RIV: BA - General Mathematics Impact factor: 0.316, year: 2010 http://link.springer.com/article/10.2478%2Fs12175-010-0015-9
DEFF Research Database (Denmark)
Moses, Matias Emil; Hedegård, Per; Hatzakis, Nikos
2016-01-01
Single-molecule measurements are emerging as a powerful tool to study the individual behavior of biomolecules, revolutionizing our understanding of biological processes. Their ability to measure the distribution of behaviors, instead of the average behavior, allows the direct observation and quan......Single-molecule measurements are emerging as a powerful tool to study the individual behavior of biomolecules, revolutionizing our understanding of biological processes. Their ability to measure the distribution of behaviors, instead of the average behavior, allows the direct observation...... and quantification of the activity, abundance, and lifetime of multiple states and transient intermediates in the energy landscape that are typically averaged out in nonsynchronized ensemble measurements. Studying the function of membrane proteins at the single-molecule level remains a formidable challenge......, and to date there is limited number of available functional assays. In this chapter, we describe in detail our recently developed methodology to reconstitute membrane proteins such as the integral membrane protein cytochrome P450 oxidoreductase on membrane systems such as Nanodiscs and study their functional...
von Götz, N; Richter, O
1999-03-01
The degradation behaviour of bentazone in 14 different soils was examined at constant temperature and moisture conditions. Two soils were examined at different temperatures. On the basis of these data the influence of soil properties and temperature on degradation was assessed and modelled. Pedo-transfer functions (PTF) in combination with a linear and a non-linear model were found suitable to describe the bentazone degradation in the laboratory as related to soil properties. The linear PTF can be combined with a rate related to the temperature to account for both soil property and temperature influence at the same time.
Wavelet-based linear-response time-dependent density-functional theory
Natarajan, Bhaarathi; Genovese, Luigi; Casida, Mark E.; Deutsch, Thierry; Burchak, Olga N.; Philouze, Christian; Balakirev, Maxim Y.
2012-06-01
Linear-response time-dependent (TD) density-functional theory (DFT) has been implemented in the pseudopotential wavelet-based electronic structure program BIGDFT and results are compared against those obtained with the all-electron Gaussian-type orbital program DEMON2K for the calculation of electronic absorption spectra of N2 using the TD local density approximation (LDA). The two programs give comparable excitation energies and absorption spectra once suitably extensive basis sets are used. Convergence of LDA density orbitals and orbital energies to the basis-set limit is significantly faster for BIGDFT than for DEMON2K. However the number of virtual orbitals used in TD-DFT calculations is a parameter in BIGDFT, while all virtual orbitals are included in TD-DFT calculations in DEMON2K. As a reality check, we report the X-ray crystal structure and the measured and calculated absorption spectrum (excitation energies and oscillator strengths) of the small organic molecule N-cyclohexyl-2-(4-methoxyphenyl)imidazo[1, 2-a]pyridin-3-amine.
Time-dependent density functional theory of open quantum systems in the linear-response regime.
Tempel, David G; Watson, Mark A; Olivares-Amaya, Roberto; Aspuru-Guzik, Alán
2011-02-21
Time-dependent density functional theory (TDDFT) has recently been extended to describe many-body open quantum systems evolving under nonunitary dynamics according to a quantum master equation. In the master equation approach, electronic excitation spectra are broadened and shifted due to relaxation and dephasing of the electronic degrees of freedom by the surrounding environment. In this paper, we develop a formulation of TDDFT linear-response theory (LR-TDDFT) for many-body electronic systems evolving under a master equation, yielding broadened excitation spectra. This is done by mapping an interacting open quantum system onto a noninteracting open Kohn-Sham system yielding the correct nonequilibrium density evolution. A pseudoeigenvalue equation analogous to the Casida equations of the usual LR-TDDFT is derived for the Redfield master equation, yielding complex energies and Lamb shifts. As a simple demonstration, we calculate the spectrum of a C(2 +) atom including natural linewidths, by treating the electromagnetic field vacuum as a photon bath. The performance of an adiabatic exchange-correlation kernel is analyzed and a first-order frequency-dependent correction to the bare Kohn-Sham linewidth based on the Görling-Levy perturbation theory is calculated.
Directory of Open Access Journals (Sweden)
Tülin Acar
2012-01-01
Full Text Available The aim of this research is to compare the result of the differential item functioning (DIF determining with hierarchical generalized linear model (HGLM technique and the results of the DIF determining with logistic regression (LR and item response theory–likelihood ratio (IRT-LR techniques on the test items. For this reason, first in this research, it is determined whether the students encounter DIF with HGLM, LR, and IRT-LR techniques according to socioeconomic status (SES, in the Turkish, Social Sciences, and Science subtest items of the Secondary School Institutions Examination. When inspecting the correlations among the techniques in terms of determining the items having DIF, it was discovered that there was significant correlation between the results of IRT-LR and LR techniques in all subtests; merely in Science subtest, the results of the correlation between HGLM and IRT-LR techniques were found significant. DIF applications can be made on test items with other DIF analysis techniques that were not taken to the scope of this research. The analysis results, which were determined by using the DIF techniques in different sample sizes, can be compared.
Energy Technology Data Exchange (ETDEWEB)
Vecharynski, Eugene [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Computational Research Division; Brabec, Jiri [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Computational Research Division; Shao, Meiyue [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Computational Research Division; Govind, Niranjan [Pacific Northwest National Lab. (PNNL), Richland, WA (United States). Environmental Molecular Sciences Lab.; Yang, Chao [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Computational Research Division
2017-12-01
We present two efficient iterative algorithms for solving the linear response eigen- value problem arising from the time dependent density functional theory. Although the matrix to be diagonalized is nonsymmetric, it has a special structure that can be exploited to save both memory and floating point operations. In particular, the nonsymmetric eigenvalue problem can be transformed into a product eigenvalue problem that is self-adjoint with respect to a K-inner product. This product eigenvalue problem can be solved efficiently by a modified Davidson algorithm and a modified locally optimal block preconditioned conjugate gradient (LOBPCG) algorithm that make use of the K-inner product. The solution of the product eigenvalue problem yields one component of the eigenvector associated with the original eigenvalue problem. However, the other component of the eigenvector can be easily recovered in a postprocessing procedure. Therefore, the algorithms we present here are more efficient than existing algorithms that try to approximate both components of the eigenvectors simultaneously. The efficiency of the new algorithms is demonstrated by numerical examples.
Generalized Functional Linear Models for Gene-based Case-Control Association Studies
Mills, James L.; Carter, Tonia C.; Lobach, Iryna; Wilson, Alexander F.; Bailey-Wilson, Joan E.; Weeks, Daniel E.; Xiong, Momiao
2014-01-01
By using functional data analysis techniques, we developed generalized functional linear models for testing association between a dichotomous trait and multiple genetic variants in a genetic region while adjusting for covariates. Both fixed and mixed effect models are developed and compared. Extensive simulations show that Rao's efficient score tests of the fixed effect models are very conservative since they generate lower type I errors than nominal levels, and global tests of the mixed effect models generate accurate type I errors. Furthermore, we found that the Rao's efficient score test statistics of the fixed effect models have higher power than the sequence kernel association test (SKAT) and its optimal unified version (SKAT-O) in most cases when the causal variants are both rare and common. When the causal variants are all rare (i.e., minor allele frequencies less than 0.03), the Rao's efficient score test statistics and the global tests have similar or slightly lower power than SKAT and SKAT-O. In practice, it is not known whether rare variants or common variants in a gene are disease-related. All we can assume is that a combination of rare and common variants influences disease susceptibility. Thus, the improved performance of our models when the causal variants are both rare and common shows that the proposed models can be very useful in dissecting complex traits. We compare the performance of our methods with SKAT and SKAT-O on real neural tube defects and Hirschsprung's disease data sets. The Rao's efficient score test statistics and the global tests are more sensitive than SKAT and SKAT-O in the real data analysis. Our methods can be used in either gene-disease genome-wide/exome-wide association studies or candidate gene analyses. PMID:25203683
DEFF Research Database (Denmark)
Ma, Jing; Iftekharul Haque, Rubaiyet; Larsen, Mikael
2012-01-01
Single-walled carbon nanotubes were purified and functionalized by nitric acid and octadecylamine. Raman and Fourier transform infrared spectroscopy were used to characterize the functionalization of the single-walled carbon nanotubes. Polyvinylidene flouride nanocomposites containing 1 wt......% purified or functionalized single-walled carbon nanotubes were prepared by solution blending and injection molding. The dispersion of different carbon nanotubes in dimethylformamide and in polyvinylidene flouride has been investigated. Mechanical properties show that adding single-walled carbon nanotubes...
Single-site Green function of the Dirac equation for full-potential electron scattering
Energy Technology Data Exchange (ETDEWEB)
Kordt, Pascal
2012-05-30
I present an elaborated analytical examination of the Green function of an electron scattered at a single-site potential, for both the Schroedinger and the Dirac equation, followed by an efficient numerical solution, in both cases for potentials of arbitrary shape without an atomic sphere approximation. A numerically stable way to calculate the corresponding regular and irregular wave functions and the Green function is via the angular Lippmann-Schwinger integral equations. These are solved based on an expansion in Chebyshev polynomials and their recursion relations, allowing to rewrite the Lippmann-Schwinger equations into a system of algebraic linear equations. Gonzales et al. developed this method for the Schroedinger equation, where it gives a much higher accuracy compared to previous perturbation methods, with only modest increase in computational effort. In order to apply it to the Dirac equation, I developed relativistic Lippmann-Schwinger equations, based on a decomposition of the potential matrix into spin spherical harmonics, exploiting certain properties of this matrix. The resulting method was embedded into a Korringa-Kohn-Rostoker code for density functional calculations. As an example, the method is applied by calculating phase shifts and the Mott scattering of a tungsten impurity. (orig.)
Suresh, Sagadevan
2016-11-01
Single crystals of glycine-phthalic acid (GPA) were grown by slow evaporation process using aqueous solution. X-ray diffraction analysis was used to examine its cell structure and it was found that the GPA crystal corresponded to the orthorhombic system. To identify absorption range and cut-off wavelength for the GPA crystal, UV-visible spectrum was recorded. UV-visible spectroscopy was used to study the optical constants such as the refractive index, the extinction coefficient, electrical susceptibility, and optical conductivity. As a function of different frequencies and temperatures, the dielectric constant and the dielectric loss were examined. The electrical properties like plasma energy, Penn gap, Fermi energy, and polarizability were determined for the analysis of the second harmonic generation (SHG). Using the Kurtz powder technique, the SHG of the GPA crystal was studied. Investigations relating to hysteresis were carried out to ascertain the ferroelectric nature of the material.
Mahadevan, M.; Sankar, P. K.; Vinitha, G.; Arivanandhan, M.; Ramachandran, K.; Anandan, P.
2017-07-01
L-arginine 4-nitrophenalate 4-nitrophenol dihydrate (LAPP) has been synthesized and grown by solution growth at room temperature using deionized water as a solvent. The various functional groups of the sample were identified by Fourier transform infra-red and Fourier transforms - Raman spectroscopic analyses. The Laser damage threshold of LAPP has been studied. Refractive index of LAPP single crystal was measured using Metricon prism coupler Instrument. The etching studies were carried out to study the quality of the grown crystals. The third order nonlinear optical properties of LAPP sample was analyzed by the Z-scan technique using 532 nm diode pumped CW Nd: YAG laser. The LAPP material exhibits negative optical nonlinearity. The results show that LAPP sample has potential applications in nonlinear optics and it can be exploited for optical limiting or switching.
Crosslinked Functional Polymer Nanowire Formation Along Single Particle Tracks
International Nuclear Information System (INIS)
Tagawa, S.
2006-01-01
The use of high-energy charged particles has extended to many fields in recent years. In medicine, non-homogeneous energy deposition along an ion trajectory (ion track) plays a crucial role in cancer radiotherapy, allowing for high spatial selectivity in the distribution of the radiation dose. The direct observation and application of ion tracks in media have also attracted interest in materials science, where it is known as nuclear track fabrication. Since the discovery that high-energy particle leave latent tracks in inorganic and organic polymer materials, the technique has also been applied to the production of micro- and nano-sized pores in materials through chemical etching of the tracks. The clear correlation between the etched pore and the characteristics of the incident charged particle has been utilized for measurement of the velocity and mass of the incident particles, and such organic film detectors are widely used in dosimetry, and in particular for galactic cosmic rays in space. The scope of the present paper is the direct nano-structure formation based on crosslinking reactions induced in nano-scale ultra-small spaces of single particle tracks. We have developed the simple one-step formation processes of nanowires without using any chemical etching or refilling processes. The present technique is in striking contrast to the previous 'nuclear track' nanofabrication techniques. According to its high feasibility for the preparation of 1-D nanowires based on 'any' kinds of polymeric materials, the present paper demonstrates the formation of not only simple polymer nanowires but also ceramic and/or multi-segment multi-functional nanowires
DEFF Research Database (Denmark)
Chon, K H; Cohen, R J; Holstein-Rathlou, N H
1997-01-01
A linear and nonlinear autoregressive moving average (ARMA) identification algorithm is developed for modeling time series data. The algorithm uses Laguerre expansion of kernals (LEK) to estimate Volterra-Wiener kernals. However, instead of estimating linear and nonlinear system dynamics via movi...
Ayalon, Michal; Watson, Anne; Lerman, Steve
2015-01-01
This study investigates students' ways of attending to linear sequential data in two tasks, and conjectures possible relationships between those ways and elements of the task design. Drawing on the substantial literature about such situations, we focus for this paper on linear rate of change, and on covariation and correspondence approaches to…
International Nuclear Information System (INIS)
Ehsani, Amir
2015-01-01
Algebras with a pair of non-associative binary operations (f, g) which are satisfy in the balanced quadratic functional equations with four object variables considered. First, we obtain a linear representation for the operations, of this kind of binary algebras (A,f,g), over an abelian group (A, +) and then we generalize the linear representation of operations, to an algebra (A,F) with non-associative binary operations which are satisfy in the balanced quadratic functional equations with four object variables. (paper)
Wavelet-based linear-response time-dependent density-functional theory
International Nuclear Information System (INIS)
Natarajan, Bhaarathi; Genovese, Luigi; Casida, Mark E.; Deutsch, Thierry; Burchak, Olga N.
2012-01-01
Highlights: ► We has been implemented LR-TD-DFT in the pseudopotential wavelet-based program. ► We have compared the results against all-electron Gaussian-type program. ► Orbital energies converges significantly faster for BigDFT than for DEMON2K. ► We report the X-ray crystal structure of the small organic molecule flugi6. ► Measured and calculated absorption spectrum of flugi6 is also reported. - Abstract: Linear-response time-dependent (TD) density-functional theory (DFT) has been implemented in the pseudopotential wavelet-based electronic structure program BIGDFT and results are compared against those obtained with the all-electron Gaussian-type orbital program DEMON2K for the calculation of electronic absorption spectra of N 2 using the TD local density approximation (LDA). The two programs give comparable excitation energies and absorption spectra once suitably extensive basis sets are used. Convergence of LDA density orbitals and orbital energies to the basis-set limit is significantly faster for BIGDFT than for DEMON2K. However the number of virtual orbitals used in TD-DFT calculations is a parameter in BIGDFT, while all virtual orbitals are included in TD-DFT calculations in DEMON2K. As a reality check, we report the X-ray crystal structure and the measured and calculated absorption spectrum (excitation energies and oscillator strengths) of the small organic molecule N-cyclohexyl-2-(4-methoxyphenyl)imidazo[1, 2-a]pyridin-3-amine.
Directory of Open Access Journals (Sweden)
Edinson Fuentes
2015-06-01
Full Text Available In this paper, we consider perturbations to a sequence of moments associated with an orthogonality linear functional that is represented by a positive measure supported in [−1, 1]. In particular, given a perturbation to such a measure on the real line, we analyze the perturbation obtained on the corresponding measure on the unit circle, when both measures are related through the Szeg´´o transformation. A similar perturbation is analyzed through the inverse Szeg´´o transformation. In both cases, we show that the applied perturbation can be expressed in terms of the singular part of the measures, and also in terms of the corresponding sequences of moments. Resumen. En el presente trabajo, analizamos las perturbaciones a una sucesión de momentos asociada a un funcional lineal de ortogonalidad que se representa por una medida positiva con soporte en [−1, 1]. En particular, dada una cierta perturbación a dicha medida en la recta real, analizamos la perturbación obtenida en la correspondiente medida en la circunferencia unidad, cuando dichas medidas están relacionadas por la transformación de Szeg´´o. También se analiza una perturbación similar a través de la transformación inversa de Szeg´´o. En ambos casos, se muestra que la perturbación aplicada puede ser expresada en términos de la parte singular de las medidas, y también a través de las correspondientes sucesiones de momentos.
Functional Insights into Sponge Microbiology by Single Cell Genomics
Hentschel, Ute
2011-04-09
Marine Sponges (Porifera) are known to harbor enormous amounts of microorganisms with members belonging to at least 30 different bacterial phyla including several candidate phyla and both archaeal lineages. Here, we applied single cell genomics to the mic
Development of demand functions and their inclusion in linear programming forecasting models
International Nuclear Information System (INIS)
Chamberlin, J.H.
1976-05-01
The purpose of the paper is to present a method for including demand directly within a linear programming model, and to use this method to analyze the effect of the Liquid Metal Fast Breeder Reactor upon the nuclear energy system
Molenje, Levi
2012-01-01
This study was designed to explore secondary mathematics teachers' beliefs about graphing calculators, their practices with the graphing calculators when teaching linear and quadratic functions, and the relationship between the teachers' beliefs and their practices. The study was conducted in two phases. In the first phase, 81 teachers…
Li, Hongjian; Leung, Kwong-Sak; Wong, Man-Hon; Ballester, Pedro J
2014-08-27
State-of-the-art protein-ligand docking methods are generally limited by the traditionally low accuracy of their scoring functions, which are used to predict binding affinity and thus vital for discriminating between active and inactive compounds. Despite intensive research over the years, classical scoring functions have reached a plateau in their predictive performance. These assume a predetermined additive functional form for some sophisticated numerical features, and use standard multivariate linear regression (MLR) on experimental data to derive the coefficients. In this study we show that such a simple functional form is detrimental for the prediction performance of a scoring function, and replacing linear regression by machine learning techniques like random forest (RF) can improve prediction performance. We investigate the conditions of applying RF under various contexts and find that given sufficient training samples RF manages to comprehensively capture the non-linearity between structural features and measured binding affinities. Incorporating more structural features and training with more samples can both boost RF performance. In addition, we analyze the importance of structural features to binding affinity prediction using the RF variable importance tool. Lastly, we use Cyscore, a top performing empirical scoring function, as a baseline for comparison study. Machine-learning scoring functions are fundamentally different from classical scoring functions because the former circumvents the fixed functional form relating structural features with binding affinities. RF, but not MLR, can effectively exploit more structural features and more training samples, leading to higher prediction performance. The future availability of more X-ray crystal structures will further widen the performance gap between RF-based and MLR-based scoring functions. This further stresses the importance of substituting RF for MLR in scoring function development.
Bulk spectral functions in single and multiscalar gravity duals
Springer, Todd; Gale, Charles; Jeon, Sangyong
2010-12-01
We examine two-point correlation functions involving the trace of the energy-momentum tensor in five-dimensional dual gravity theories supported by one or more scalar fields. A prescription for determining bulk channel spectral functions is developed. This prescription generalizes previous work which centered on one scalar field. As an application of these techniques, we investigate the bulk spectral function and corresponding sum rule in the Chamblin-Reall background. We show that, when expressed in terms of the beta function, the sum rule for the Chamblin-Reall background can be written in a form similar to the sum rule in Yang-Mills theory.
Sign changes in linear combinations of derivatives and convolutions of Polya frequency functions
Directory of Open Access Journals (Sweden)
Steven Nahmias
1979-01-01
combinations of derivatives and convolutions of Polya frequency functions using the variation diminishing properties of totally positive functions. These constitute extensions of earlier results of Karlin and Proschan.
Expression, production and renaturation of a functional single-chain ...
African Journals Online (AJOL)
The single-chain variable antibody fragment (scFv) against human intercellular adhesion molecule-1 (ICAM-1) was expressed at a high level in Escherichia coli as inclusion bodies. We attempted to refold the scFv by ion-exchange chromatography (IEC), dialysis and dilution. The results show that the column ...
Right ventricular function assessment in single LAD lesion patients ...
African Journals Online (AJOL)
Rania Gaber
2015-10-09
Oct 9, 2015 ... Abstract Background: Strain and strain rate imaging is currently the most popular echocardio- graphic technique that reveals subclinical myocardial damage, and data are not available on this imaging method with regard to assessing right ventricular involvement in single LAD lesion. Aim: To evaluate right ...
Multi-Functional Measurement Using a Single FBG Sensor
Mizutani, Y.; Groves, R.M.
2011-01-01
This paper describes the measurement of average strain, strain distribution and vibration of a cantilever beam made of Carbon Fiber Reinforced Plastics (CFRP), using a single Fibre Bragg Grating (FBG) sensor mounted on the beam surface. Average strain is determined from the displacement of the peak
Functionalization of oxidized single-walled carbon nanotubes with 4 ...
Indian Academy of Sciences (India)
The low-dimension and remarkable physical proper- ties of single-walled carbon nanotubes (SWCNTs) ren- der them unique material properties with a wide range of potential applications.1,2 However, the lack of sol- ubility in solvents presents a considerable impediment toward harnessing of their applications.
International Nuclear Information System (INIS)
Rees, J.
1986-11-01
Scaling laws for linear colliders are considered for the case of laterally round Gaussian beams and for the case that mutual pinching of the beams can be ignored. Based on these assumptions, the relationship is found between the interaction area, beta function, beam emittance, and energy for a linear collider in order to show the need for substantial improvements in the feasible values of accelerator parameters to reach a center of mass energy of 0.7 TeV. Pinch is then taken into account
On the rank 1 convexity of stored energy functions of physically linear stress-strain relations
Czech Academy of Sciences Publication Activity Database
Šilhavý, Miroslav; Bertram, A.; Böhlke, T.
2007-01-01
Roč. 86, č. 3 (2007), s. 235-243 ISSN 0374-3535 Institutional research plan: CEZ:AV0Z10190503 Keywords : generalized linear elastic law s * generalized strain measures * rank 1 convexity Subject RIV: BA - General Mathematics Impact factor: 0.743, year: 2007
On linearity of pan-integral and pan-integrable functions space
Czech Academy of Sciences Publication Activity Database
Ouyang, Y.; Li, J.; Mesiar, Radko
2017-01-01
Roč. 90, č. 1 (2017), s. 307-318 ISSN 0888-613X Institutional support: RVO:67985556 Keywords : linearity * monotone measure * Pan-integrable space Subject RIV: BA - General Mathematics OBOR OECD: Pure mathematics Impact factor: 2.845, year: 2016 http://library.utia.cas.cz/separaty/2017/E/mesiar-0477549.pdf
Single-walled carbon nanotubes (SWCNTs) with proper functionalization are desirable for applications that require dispersion in aqueous and biological environments, and functionalized SWCNTs also serve as building blocks for conjugation with specific molecules in these applicatio...
Iwata, Hiromitsu; Matsufuji, Naruhiro; Toshito, Toshiyuki; Akagi, Takashi; Otsuka, Shinya; Shibamoto, Yuta
2013-03-01
We investigated the applicability of the repairable-conditionally repairable (RCR) model and the multi-target (MT) model to dose conversion in high-dose-per-fraction radiotherapy in comparison with the linear-quadratic (LQ) model. Cell survival data of V79 and EMT6 single cells receiving single doses of 2-12 Gy or 2 or 3 fractions of 4 or 5 Gy each, and that of V79 spheroids receiving single doses of 5-26 Gy or 2-5 fractions of 5-12 Gy, were analyzed. Single and fractionated doses to actually reduce cell survival to the same level were determined by a colony assay. Single doses used in the experiments and surviving fractions at the doses were substituted into equations of the RCR, MT and LQ models in the calculation software Mathematica, and each parameter coefficient was computed. Thereafter, using the coefficients and the three models, equivalent single doses for the hypofractionated doses were calculated. They were then compared with actually-determined equivalent single doses for the hypofractionated doses. The equivalent single doses calculated using the RCR, MT and LQ models tended to be lower than the actually determined equivalent single doses. The LQ model seemed to fit relatively well at doses of 5 Gy or less. At 6 Gy or higher doses, the RCR and MT models seemed to be more reliable than the LQ model. In hypofractionated stereotactic radiotherapy, the LQ model should not be used, and conversion models incorporating the concept of the RCR or MT models, such as the generalized linear-quadratic models, appear to be more suitable.
Functionalized nanopipettes: toward label-free, single cell biosensors
Actis, Paolo; Mak, Andy C.; Pourmand, Nader
2010-01-01
Nanopipette technology has been proven to be a label-free biosensor capable of identifying DNA and proteins. The nanopipette can include specific recognition elements for analyte discrimination based on size, shape, and charge density. The fully electrical read-out and the ease and low-cost fabrication are unique features that give this technology an enormous potential. Unlike other biosensing platforms, nanopipettes can be precisely manipulated with submicron accuracy and used to study singl...
Hsu, Ching-Chi; Lin, Jinn; Chao, Ching-Kong
2011-12-01
Optimizing the orthopaedic screws can greatly improve their biomechanical performances. However, a methodical design optimization approach requires a long time to search the best design. Thus, the surrogate objective functions of the orthopaedic screws should be accurately developed. To our knowledge, there is no study to evaluate the strengths and limitations of the surrogate methods in developing the objective functions of the orthopaedic screws. Three-dimensional finite element models for both the tibial locking screws and the spinal pedicle screws were constructed and analyzed. Then, the learning data were prepared according to the arrangement of the Taguchi orthogonal array, and the verification data were selected with use of a randomized selection. Finally, the surrogate objective functions were developed by using either the multiple linear regression or the artificial neural network. The applicability and accuracy of those surrogate methods were evaluated and discussed. The multiple linear regression method could successfully construct the objective function of the tibial locking screws, but it failed to develop the objective function of the spinal pedicle screws. The artificial neural network method showed a greater capacity of prediction in developing the objective functions for the tibial locking screws and the spinal pedicle screws than the multiple linear regression method. The artificial neural network method may be a useful option for developing the objective functions of the orthopaedic screws with a greater structural complexity. The surrogate objective functions of the orthopaedic screws could effectively decrease the time and effort required for the design optimization process. Copyright Â© 2010 Elsevier Ireland Ltd. All rights reserved.
Wang, Lirong; Ma, Chao; Wipf, Peter; Xie, Xiang-Qun
2012-01-01
Upon binding to a receptor, agonists and antagonists can induce distinct biological functions and thus lead to significantly different pharmacological responses. Thus, in silico prediction or in vitro characterization of ligand agonistic or antagonistic functionalities is an important step toward identifying specific pharmacological therapeutics. In this study, we investigated the molecular properties of agonists and antagonists of human 5-hydroxytryptamine receptor subtype 1A (5-HT1A ). Subsequently, intrinsic functions of these ligands (agonists/antagonists) were modeled by support vector machine (SVM), using five 2D molecular fingerprints and the 3D Topomer distance. Five kernel functions, including linear, polynomial, RBF, Tanimoto and a novel Topomer kernel based on Topomer 3D similarity were used to develop linear and nonlinear classifiers. These classifiers were validated through cross-validation, yielding a classification accuracy ranging from 80.4 % to 92.3 %. The performance of different kernels and fingerprints was analyzed and discussed. Linear and nonlinear models were further interpreted through the illustration of underlying classification mechanism. The computation protocol has been automated and demonstrated through our online service. This study expands the scope and applicability of similarity-based methods in cheminformatics, which are typically used for the identification of active molecules against a target protein. Our findings provide a good starting point for further systematic classifications of other GPCR ligands and for the data mining of large chemical libraries. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
DEFF Research Database (Denmark)
Utko, Pawel; Persson, Karl Fredrik; Kristensen, Anders
2011-01-01
We demonstrate that fabrication of nanofluidic systems can be greatly simplified by injection molding of polymers. We functionally test our devices by single-molecule DNA experiments in nanochannels.......We demonstrate that fabrication of nanofluidic systems can be greatly simplified by injection molding of polymers. We functionally test our devices by single-molecule DNA experiments in nanochannels....
Ito, K.; Teglas, R.
1984-01-01
The numerical scheme based on the Legendre-tau approximation is proposed to approximate the feedback solution to the linear quadratic optimal control problem for hereditary differential systems. The convergence property is established using Trotter ideas. The method yields very good approximations at low orders and provides an approximation technique for computing closed-loop eigenvalues of the feedback system. A comparison with existing methods (based on averaging and spline approximations) is made.
Ito, Kazufumi; Teglas, Russell
1987-01-01
The numerical scheme based on the Legendre-tau approximation is proposed to approximate the feedback solution to the linear quadratic optimal control problem for hereditary differential systems. The convergence property is established using Trotter ideas. The method yields very good approximations at low orders and provides an approximation technique for computing closed-loop eigenvalues of the feedback system. A comparison with existing methods (based on averaging and spline approximations) is made.
On the influence of quasi-linear distortion of the electron distribution function on ECCD efficiency
International Nuclear Information System (INIS)
Kuyanov, A.Yu.; Skovoroda, A.A.; Tokman, M.D.
1997-01-01
In this paper, the analytical and computational theory of quasi-linear and toroidal effects on electron cyclotron current drive (ECCD) is presented. Simple analytical formulae for the estimation of the ECCD correction due to the action of high-power microwaves and banana electrons are obtained. The article extends the results of calculations performed with the use of the OGRAY code. Good agreement between the analytical and numerical calculations is obtained. The optimum conditions of ECCD are investigated. (Author)
Extraordinary linear dynamic range in laser-defined functionalized graphene photodetectors
De Sanctis, Adolfo; Jones, Gareth F.; Wehenkel, Dominique J.; Bezares, Francisco; Koppens, Frank H. L.; Craciun, Monica F.; Russo, Saverio
2017-01-01
Graphene-based photodetectors have demonstrated mechanical flexibility, large operating bandwidth, and broadband spectral response. However, their linear dynamic range (LDR) is limited by graphene’s intrinsic hot-carrier dynamics, which causes deviation from a linear photoresponse at low incident powers. At the same time, multiplication of hot carriers causes the photoactive region to be smeared over distances of a few micrometers, limiting the use of graphene in high-resolution applications. We present a novel method for engineering photoactive junctions in FeCl3-intercalated graphene using laser irradiation. Photocurrent measured at these planar junctions shows an extraordinary linear response with an LDR value at least 4500 times larger than that of other graphene devices (44 dB) while maintaining high stability against environmental contamination without the need for encapsulation. The observed photoresponse is purely photovoltaic, demonstrating complete quenching of hot-carrier effects. These results pave the way toward the design of ultrathin photodetectors with unprecedented LDR for high-definition imaging and sensing. PMID:28560334
Non-linear panel flutter for temperature-dependent functionally graded material panels
Ibrahim, Hesham Hamed; Tawfik, Mohammad; Al-Ajmi, Mohammed
2008-01-01
The non-linear flutter and thermal buckling of an FGM panel under the combined effect of elevated temperature conditions and aerodynamic loading is investigated using a finite element model based on the thin plate theory and von Karman strain-displacement relations to account for moderately large deflection. The aerodynamic pressure is modeled using the quasi-steady first order piston theory. The governing non-linear equations are obtained using the principal of virtual work adopting an approach based on the thermal strain being a cumulative physical quantity to account for temperature dependent material properties. This system of non-linear equations is solved by Newton-Raphson numerical technique. It is found that the temperature increase has an adverse effect on the FGM panel flutter characteristics through decreasing the critical dynamic pressure. Decreasing the volume fraction enhances flutter characteristics but this is limited by structural integrity aspect. The presence of aerodynamic flow results in postponing the buckling temperature and in suppressing the post buckling deflection while the temperature increase gives way for higher limit cycle amplitude.
Energy Technology Data Exchange (ETDEWEB)
Thukral, Kanika [Academy of Scientific and Innovative Research, CSIR- National Physical Laboratory, New Delhi, 110012 (India); CSIR-National Physical Laboratory, Dr. K.S. Krishnan Road, New Delhi, 110 012 (India); Vijayan, N., E-mail: nvijayan@nplindia.org [CSIR-National Physical Laboratory, Dr. K.S. Krishnan Road, New Delhi, 110 012 (India); Vij, Mahak [CSIR-National Physical Laboratory, Dr. K.S. Krishnan Road, New Delhi, 110 012 (India); Nagaraja, C.M. [Department of Chemistry, Indian Institute of Technology Ropar, Rupnagar, 140001, Punjab (India); Jayaramakrishnan, V. [Centro De Investigations En Optica, Loma del Bosque 115, Colonia Lomas del Campestre, León, Guanajuato, Código Postal, 37150 (Mexico); Jayalakshmy, M.S. [International and Inter University Centre for Nanoscience and Nanotechnology, Mahatma Gandhi University, Kottayam, Kerala, 686560 (India); Kant, Rajni [Department of Physics and Electronics, University of Jammu, Jammu Tawi, 180006 (India)
2017-06-15
Today the fundamental aspect of the researchers is to explore maximum physical properties of the material for device fabrication. In the present article, single crystal X-ray diffraction has been carried out to verify the formation of the synthesized compound. In addition to that, powder X-ray diffraction has been performed to obtain diffraction pattern of L-Prolinium Picrate single crystal. The strain present inside the single crystal was measured using Hall-Williamson equation from PXRD measurements. The dark current and photon current was obtained from photoconductivity technique whose plot depicted that the sample was negative photoconducting material. Optical homogeneity of the single crystal was analyzed using birefringence technique. Its resistance towards Nd: YAG laser was scrutinized for L-Prolinium Picrate single crystal by applying 1 pulse per second. Different thermal parameters like thermal conductivity, thermal diffusivity, thermal effusivity and specific heat were computed using photo-pyroelectric technique. Solid state parameters were calculated from Clausius Mossotti relation by taking structural information of the title compound. Also, optical parameters like refractive index, reflectance etc were calculated through UV–Vis–NIR analysis. - Highlights: • An optically transparent L-Prolinium Picrate single crystal was harvested from slow evaporation solution growth technique. • The compound shows negative photoconducting nature. • Its optical homogeneity was analyzed using birefringence. • Single shot of laser was applied to sample to measure laser damage threshold value. • The thermal parameters were computed from Photopyroelectric technique.
Energy Technology Data Exchange (ETDEWEB)
Santos, G.B.; Pinheiro Neto, D.; Lisita, L.R.; Machado, P.C.M.; Oliveira, J.V.M. [Universidade Federal de Goias (UFG), Goiania, GO (Brazil). Escola de Engenharia Eletrica e de Computacao], Emails: guilhermebsantos@gmail.com, daywes@gmail.com, lrlisi-ta@gmail.com, pcesar@eee.ufg.br, joao.eee@gmail.com
2009-07-01
This paper analyzes the behavior of a electronic meter of single-phase in the laboratory when it is subjected to a environment with linear loads and nonlinear loads kind residential and commercial. It differs from correlated studies mainly for making use of real loads encountered in day-to-day, rather than as sources of electronic loads how has been observed in the state of the art. The comparison of results is made based on high precision energy pattern developed by virtual instrumentation means.
Said-Houari, Belkacem
2017-01-01
This self-contained, clearly written textbook on linear algebra is easily accessible for students. It begins with the simple linear equation and generalizes several notions from this equation for the system of linear equations and introduces the main ideas using matrices. It then offers a detailed chapter on determinants and introduces the main ideas with detailed proofs. The third chapter introduces the Euclidean spaces using very simple geometric ideas and discusses various major inequalities and identities. These ideas offer a solid basis for understanding general Hilbert spaces in functional analysis. The following two chapters address general vector spaces, including some rigorous proofs to all the main results, and linear transformation: areas that are ignored or are poorly explained in many textbooks. Chapter 6 introduces the idea of matrices using linear transformation, which is easier to understand than the usual theory of matrices approach. The final two chapters are more advanced, introducing t...
Microscopic single-crystal refractometry as a function of wavelength
International Nuclear Information System (INIS)
DeLoach, L.D.
1994-01-01
The refractive indices of crystal fragments 50--200 μm in size can be measured for light wavelengths between 365 and 1100 nm with a spindle-stage refractometer. Established methods from optical crystallograpy are used to orient a crystal on the microscope spindle stage and then to match its refractive index to an immersion fluid. The refractive index of the fluid for the wavelength of light and matching temperature is determined by comparison of a reference crystal on a second spindle axis with the fluid under the match conditions. Investigations of new nonlinear-optical crystals admirably demonstrate the advantages of measuring the refractive index to ± 0.0004 in small single crystals
Hung, Linda; Huang, Chen; Shin, Ilgyou; Ho, Gregory S.; Lignères, Vincent L.; Carter, Emily A.
2010-12-01
: Intel with ifort; AMD Opteron with pathf90 Operating system: Linux Has the code been vectorized or parallelized?: Yes. Parallelization is implemented through domain composition using MPI. RAM: Problem dependent, but 2 GB is sufficient for up to 10,000 ions. Classification: 7.3 External routines: FFTW 2.1.5 ( http://www.fftw.org) Catalogue identifier of previous version: AEBN_v1_0 Journal reference of previous version: Comput. Phys. Comm. 179 (2008) 839 Does the new version supersede the previous version?: Yes Nature of problem: Given a set of coordinates describing the initial ion positions under periodic boundary conditions, recovers the ground state energy, electron density, ion positions, and cell lattice vectors predicted by orbital-free density functional theory. The computation of all terms is effectively linear scaling. Parallelization is implemented through domain decomposition, and up to ˜10,000 ions may be included in the calculation on just a single processor, limited by RAM. For example, when optimizing the geometry of ˜50,000 aluminum ions (plus vacuum) on 48 cores, a single iteration of conjugate gradient ion geometry optimization takes ˜40 minutes wall time. However, each CG geometry step requires two or more electron density optimizations, so step times will vary. Solution method: Computes energies as described in text; minimizes this energy with respect to the electron density, ion positions, and cell lattice vectors. Reasons for new version: To allow much larger systems to be simulated using PROFESS. Restrictions: PROFESS cannot use nonlocal (such as ultrasoft) pseudopotentials. A variety of local pseudopotential files are available at the Carter group website ( http://www.princeton.edu/mae/people/faculty/carter/homepage/research/localpseudopotentials/). Also, due to the current state of the kinetic energy functionals, PROFESS is only reliable for main group metals and some properties of semiconductors. Running time: Problem dependent: the test
Functionalization of oxidized single-walled carbon nanotubes with 4 ...
Indian Academy of Sciences (India)
with phase transfer catalyst.7 Along with our previ- ous work on ... typically proper segments to make a junction with larger globular organic .... DMF. Scheme 2. Functionalization of SWCNTs-COOH with 4-amino benzo-9-crown-3 ether (5). LiCl/ H2O-DMF. Li+. ,1h. SWCNT-CE -Li. +. (8). SWCNT-CE (7). O. O. O. NH3. +. C. O.
Adhyapak, P. V.; Islam, M.; Aiyer, R. C.; Mulik, U. P.; Negi, Y. S.; Amalnerkar, D. P.
2008-05-01
Meta-nitroaniline ( m-NA) is one of the organic single crystals extensively studied due to its high non-linear effect. m-NA is also known to exhibit comparable or even better non-linear optical (NLO) properties than known inorganic materials. In this paper, we report development of m-NA single crystals by solution growth technique using different solvent systems. The size of the single crystal varies depending on solvent. The highest average crystal size acquired was 10 mm×5 mm×5 mm using methyl ethyl ketone and acetone as solvent. These single crystals were characterized using various physico-chemical techniques such as XRD and scanning electron microscopy (SEM). The developed crystals were subsequently coated with recycled polystyrene (Re-PS) (1, 2, 5 and 10 wt% concentrations) to study the effect of polymer coating on the second harmonic generation (SHG) properties of the single crystals. The purpose of polymer coating on m-NA single crystal is to improve surface morphology of crystal (i.e. it makes surface smooth) and to enhance power handling capacity for pulse laser of a crystal which, in turn, improves the SHG intensity. The optimum percentage of coating was determined for the m-NA single crystals obtained from different solvent systems. Furthermore, the polymer coating also plays key role in preventing the degradation of the m-NA crystal (well-known as highly sublime material) and ultimately increasing the shelf life of the crystal for its device application.
Linear response calculation using the canonical-basis TDHFB with a schematic pairing functional
International Nuclear Information System (INIS)
Ebata, Shuichiro; Nakatsukasa, Takashi; Yabana, Kazuhiro
2011-01-01
A canonical-basis formulation of the time-dependent Hartree-Fock-Bogoliubov (TDHFB) theory is obtained with an approximation that the pair potential is assumed to be diagonal in the time-dependent canonical basis. The canonical-basis formulation significantly reduces the computational cost. We apply the method to linear-response calculations for even-even nuclei. E1 strength distributions for proton-rich Mg isotopes are systematically calculated. The calculation suggests strong Landau damping of giant dipole resonance for drip-line nuclei.
DEFF Research Database (Denmark)
Hedegård, Erik D.; Olsen, Jógvan Magnus Haugaard; Knecht, Stefan
2015-01-01
, molecular properties such as excitation energies and oscillator strengths can be obtained. The PE-MC-srDFT method and the additional terms required for linear response have been implemented in a development version of Dalton. To benchmark the PE-MC-srDFT approach against the literature data, we have...... investigated the low-lying electronic excitations of acetone and uracil, both immersed in water solution. The PE-MC-srDFT results are consistent and accurate, both in terms of the calculated solvent shift and, unlike regular PE-MCSCF, also with respect to the individual absolute excitation energies...
Liu, Yingying; Sowmya, Arcot; Khamis, Heba
2018-01-01
Manually measured anthropometric quantities are used in many applications including human malnutrition assessment. Training is required to collect anthropometric measurements manually, which is not ideal in resource-constrained environments. Photogrammetric methods have been gaining attention in recent years, due to the availability and affordability of digital cameras. The primary goal is to demonstrate that height and mid-upper arm circumference (MUAC)-indicators of malnutrition-can be accurately estimated by applying linear regression to distance measurements from photographs of participants taken from five views, and determine the optimal view combinations. A secondary goal is to observe the effect on estimate error of two approaches which reduce complexity of the setup, computational requirements and the expertise required of the observer. Thirty-one participants (11 female, 20 male; 18-37 years) were photographed from five views. Distances were computed using both camera calibration and reference object techniques from manually annotated photos. To estimate height, linear regression was applied to the distances between the top of the participants head and the floor, as well as the height of a bounding box enclosing the participant's silhouette which eliminates the need to identify the floor. To estimate MUAC, linear regression was applied to the mid-upper arm width. Estimates were computed for all view combinations and performance was compared to other photogrammetric methods from the literature-linear distance method for height, and shape models for MUAC. The mean absolute difference (MAD) between the linear regression estimates and manual measurements were smaller compared to other methods. For the optimal view combinations (smallest MAD), the technical error of measurement and coefficient of reliability also indicate the linear regression methods are more reliable. The optimal view combination was the front and side views. When estimating height by linear
Directory of Open Access Journals (Sweden)
Jens G. Balchen
1984-10-01
Full Text Available The problem of systematic derivation of a quasi-dynamic optimal control strategy for a non-linear dynamic process based upon a non-quadratic objective function is investigated. The wellknown LQG-control algorithm does not lead to an optimal solution when the process disturbances have non-zero mean. The relationships between the proposed control algorithm and LQG-control are presented. The problem of how to constrain process variables by means of 'penalty' - terms in the objective function is dealt with separately.
Directory of Open Access Journals (Sweden)
M. L. Kleptsyna
2001-01-01
Full Text Available The optimal filtering problem for multidimensional continuous possibly non-Markovian, Gaussian processes, observed through a linear channel driven by a Brownian motion, is revisited. Explicit Volterra type filtering equations involving the covariance function of the filtered process are derived both for the conditional mean and for the covariance of the filtering error. The solution of the filtering problem is applied to obtain a Cameron-Martin type formula for Laplace transforms of a quadratic functional of the process. Particular cases for which the results can be further elaborated are investigated.
A linear operator and associated families of meromorphically q-hypergeometric functions
Challab, Khalid A.; Darus, M.; Ghanim, F.
2017-04-01
In this article, we derive a new class of meromorphically analytic functions, which is defined by means of a Hadamard product (or convolution) involving some suitably normalized meromorphically q-Hypergeometric functions. A characterization property giving the coefficient bounds is obtained. The other related properties, which are studied in this paper, include distortion and the radii of meromorphic starlikeness and meromorphic convexity
Reinforced Thermoplastic Polyimide with Dispersed Functionalized Single Wall Carbon Nanotubes
Lebron-Colon, Marisabel; Meador, Michael A.; Gaier, James R.; Sola, Francisco; Scheiman, Daniel A.; McCorkle, Linda S.
2010-01-01
Molecular pi-complexes were formed from pristine HiPCO single-wall carbon nanotubes (SWCNTs) and 1-pyrene- N-(4- N'-(5-norbornene-2,3-dicarboxyimido)phenyl butanamide, 1. Polyimide films were prepared with these complexes as well as uncomplexed SWCNTs and the effects of nanoadditive addition on mechanical, thermal, and electrical properties of these films were evaluated. Although these properties were enhanced by both nanoadditives, larger increases in tensile strength and thermal and electrical conductivities were obtained when the SWCNT/1 complexes were used. At a loading level of 5.5 wt %, the Tg of the polyimide increased from 169 to 197 C and the storage modulus increased 20-fold (from 142 to 3045 MPa). The addition of 3.5 wt % SWCNT/1 complexes increased the tensile strength of the polyimide from 61.4 to 129 MPa; higher loading levels led to embrittlement and lower tensile strengths. The electrical conductivities (DC surface) of the polyimides increased to 1 x 10(exp -4) Scm(exp -1) (SWCNT/1 complexes loading level of 9 wt %). Details of the preparation of these complexes and their effects on polyimide film properties are discussed.
Noncovalent functionalization of single-walled carbon nanotubes with porphyrins
Energy Technology Data Exchange (ETDEWEB)
Bassiouk, María; Basiuk, Vladimir A. [Instituto de Ciencias Nucleares, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, 04510 México D.F. (Mexico); Basiuk, Elena V., E-mail: elenagd@unam.mx [Centro de Ciencias Aplicadas y Desarrollo Tecnológico, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, 04510 México D.F. (Mexico); Álvarez-Zauco, Edgar [Facultad de Ciencias, Universidad Nacional Autónoma de México, Circuito Exterior C.U., 04510 México D.F. (Mexico); Martínez-Herrera, Melchor [Centro de Ciencias Aplicadas y Desarrollo Tecnológico, Universidad Nacional Autónoma de México, Circuito Exterior, Ciudad Universitaria, 04510 México D.F. (Mexico); Rojas-Aguilar, Aaron [Centro de Investigación y de Estudios Avanzados, Instituto Politécnico Nacional, Av. Instituto Politécnico Nacional 2508, San Pedro Zacatenco, 07360 México D.F. (Mexico); Puente-Lee, Iván [Facultad de Química, Universidad Nacional Autónoma de México, Circuito Exterior C.U., 04510 México D.F. (Mexico)
2013-06-15
The covalent and noncovalent interactions of porphyrins and related tetraazamacrocyclic compounds with single-walled carbon nanotubes (SWNTs) is a subject of increasing research effort, directed toward the design of novel hybrid nanomaterials combining unique electronic and optical properties of both molecular species. In this report, we used different experimental techniques as well as molecular mechanics (MM) calculations to analyze the adsorption of meso-tetraphenylporphine (or 5,10,15,20-tetraphenyl-21H,23H-porphine, H{sub 2}TPP) and its complexes with Ni(II) and Co(II) (NiTPP and CoTPP, respectively), as well as hemin (a natural porphyrin), onto the surface of SWNTs. Altogether, the results suggested that all four porphyrin species noncovalently interact with SWNTs, forming hybrid nanomaterials. Nevertheless, of all four porphyrin species, the strongest interaction with SWNTs occurs in the case of CoTPP, which is able to intercalate and considerably disperse SWNT bundles, and therefore absorb onto the surface of individual SWNTs. In contrast, NiTPP, CoTPP and hemin, due to a weaker interaction, are unable to do so and therefore are only capable to adsorb onto the surface of SWNT bundles. According to the scanning tunneling microscopy (STM) imaging and MM results, the adsorption of CoTPP onto SWNT sidewalls results in the formation of porphyrin arrays in the shape of long-period interacting helixes with variable periodicity, possibly due to different diameters and chiralities of SWNTs present in the samples. Since the remaining porphyrin species were found to adsorb onto the surface of SWNT bundles, the precise geometry of the corresponding porphyrin/SWNT complexes is difficult to characterize.
Noncovalent functionalization of single-walled carbon nanotubes with porphyrins
International Nuclear Information System (INIS)
Bassiouk, María; Basiuk, Vladimir A.; Basiuk, Elena V.; Álvarez-Zauco, Edgar; Martínez-Herrera, Melchor; Rojas-Aguilar, Aaron; Puente-Lee, Iván
2013-01-01
The covalent and noncovalent interactions of porphyrins and related tetraazamacrocyclic compounds with single-walled carbon nanotubes (SWNTs) is a subject of increasing research effort, directed toward the design of novel hybrid nanomaterials combining unique electronic and optical properties of both molecular species. In this report, we used different experimental techniques as well as molecular mechanics (MM) calculations to analyze the adsorption of meso-tetraphenylporphine (or 5,10,15,20-tetraphenyl-21H,23H-porphine, H 2 TPP) and its complexes with Ni(II) and Co(II) (NiTPP and CoTPP, respectively), as well as hemin (a natural porphyrin), onto the surface of SWNTs. Altogether, the results suggested that all four porphyrin species noncovalently interact with SWNTs, forming hybrid nanomaterials. Nevertheless, of all four porphyrin species, the strongest interaction with SWNTs occurs in the case of CoTPP, which is able to intercalate and considerably disperse SWNT bundles, and therefore absorb onto the surface of individual SWNTs. In contrast, NiTPP, CoTPP and hemin, due to a weaker interaction, are unable to do so and therefore are only capable to adsorb onto the surface of SWNT bundles. According to the scanning tunneling microscopy (STM) imaging and MM results, the adsorption of CoTPP onto SWNT sidewalls results in the formation of porphyrin arrays in the shape of long-period interacting helixes with variable periodicity, possibly due to different diameters and chiralities of SWNTs present in the samples. Since the remaining porphyrin species were found to adsorb onto the surface of SWNT bundles, the precise geometry of the corresponding porphyrin/SWNT complexes is difficult to characterize.
Vibration Analysis of Suspension Cable with Attached Masses by Non-linear Spline Function Method
Directory of Open Access Journals (Sweden)
Qin Jian
2016-01-01
Full Text Available The nonlinear strain and stress expressions of suspension cable are established from the basic condition of suspension structure on the Lagrange coordinates and the equilibrium equation of the suspension structure is obtained. The dynamics equations of motion of the suspended cable with attached masses are proposed according to the virtual work principle. Using the spline function as interpolation functions of displacement and spatial position, the spline function method of dynamics equation of suspension cable is formed in which the stiffness matrix is expressed by spline function, and the solution method of stiffness matrix, matrix assembly method based on spline integral, is put forwards which can save cost time efficiency. The vibration frequency of the suspension cable is calculated with different attached masses, which provides theoretical basis for valuing of safety coefficient of the bearing cable of the cableway.
Spinnato, J; Roubaud, M-C; Burle, B; Torrésani, B
2015-06-01
The main goal of this work is to develop a model for multisensor signals, such as magnetoencephalography or electroencephalography (EEG) signals that account for inter-trial variability, suitable for corresponding binary classification problems. An important constraint is that the model be simple enough to handle small size and unbalanced datasets, as often encountered in BCI-type experiments. The method involves the linear mixed effects statistical model, wavelet transform, and spatial filtering, and aims at the characterization of localized discriminant features in multisensor signals. After discrete wavelet transform and spatial filtering, a projection onto the relevant wavelet and spatial channels subspaces is used for dimension reduction. The projected signals are then decomposed as the sum of a signal of interest (i.e., discriminant) and background noise, using a very simple Gaussian linear mixed model. Thanks to the simplicity of the model, the corresponding parameter estimation problem is simplified. Robust estimates of class-covariance matrices are obtained from small sample sizes and an effective Bayes plug-in classifier is derived. The approach is applied to the detection of error potentials in multichannel EEG data in a very unbalanced situation (detection of rare events). Classification results prove the relevance of the proposed approach in such a context. The combination of the linear mixed model, wavelet transform and spatial filtering for EEG classification is, to the best of our knowledge, an original approach, which is proven to be effective. This paper improves upon earlier results on similar problems, and the three main ingredients all play an important role.
Scott, M
2012-08-01
The time-covariance function captures the dynamics of biochemical fluctuations and contains important information about the underlying kinetic rate parameters. Intrinsic fluctuations in biochemical reaction networks are typically modelled using a master equation formalism. In general, the equation cannot be solved exactly and approximation methods are required. For small fluctuations close to equilibrium, a linearisation of the dynamics provides a very good description of the relaxation of the time-covariance function. As the number of molecules in the system decrease, deviations from the linear theory appear. Carrying out a systematic perturbation expansion of the master equation to capture these effects results in formidable algebra; however, symbolic mathematics packages considerably expedite the computation. The authors demonstrate that non-linear effects can reveal features of the underlying dynamics, such as reaction stoichiometry, not available in linearised theory. Furthermore, in models that exhibit noise-induced oscillations, non-linear corrections result in a shift in the base frequency along with the appearance of a secondary harmonic.
WEBER, WM; STAPEL, C
K-absorption spectra of a gallium single crystal were measured with highly polarized synchrotron radiation for two orientations of the electric vector in the absorber: along the crystallographic a and b axes, respectively. The spectra, and small, anisotropic alterations in shape, positions, and
DEFF Research Database (Denmark)
Liu, Fupin; Wang, Song; Gao, Cong Li
2017-01-01
Fused-pentagons results in an increase of local steric strain according to the isolated pentagon rule (IPR), and for all reported non-IPR clusterfullerenes multiple (two or three) metals are required to stabilize the strained fused-pentagons, making it difficult to access the single-atom properti...... (SMM)....
Acupuncture for Functional Dyspepsia: A Single Blinded, Randomized, Controlled Trial
Directory of Open Access Journals (Sweden)
Yulian Jin
2015-01-01
Full Text Available In order to investigate the therapeutic potential of acupuncture on patients with functional dyspepsia (FD, patients were randomized to receive acupuncture at classic acupoints with manipulations (treatment group versus acupuncture at nonacupoints without manipulation (control group once every other day, three times a week, for one month and were followed up for three months. The primary outcomes included dyspeptic symptoms, quality of life, and mental status. The secondary outcomes included the fasting serum gastrin concentration, and frequency and propagation velocity of gastric slow waves. Sixty patients with FD were included, among whom, four dropped out. After one month's treatment, patients with FD showed significant improvements in primary (in both groups and secondary (in the eight patients of the treatment group outcomes as compared with baseline (P=0.0078 to <0.0001; treatment group has better outcomes in all primary outcome measures (P<0.0001 except for SDS (P=0.0005. Improvements on dyspeptic symptoms persist during follow-up (better in the treatment group. Acupuncture with manual manipulation had better effects on improving dyspeptic symptoms, mental status, and quality of life in patients with FD. These effects may be related to the increased frequency and propagation speed of gastric slow waves and serum gastrin secretion.
Dziedzic, J; Hill, Q; Skylaris, C-K
2013-12-07
We present a method for the calculation of four-centre two-electron repulsion integrals in terms of localised non-orthogonal generalised Wannier functions (NGWFs). Our method has been implemented in the ONETEP program and is used to compute the Hartree-Fock exchange energy component of Hartree-Fock and Density Functional Theory (DFT) calculations with hybrid exchange-correlation functionals. As the NGWFs are optimised in situ in terms of a systematically improvable basis set which is equivalent to plane waves, it is possible to achieve large basis set accuracy in routine calculations. The spatial localisation of the NGWFs allows us to exploit the exponential decay of the density matrix in systems with a band gap in order to compute the exchange energy with a computational effort that increases linearly with the number of atoms. We describe the implementation of this approach in the ONETEP program for linear-scaling first principles quantum mechanical calculations. We present extensive numerical validation of all the steps in our method. Furthermore, we find excellent agreement in energies and structures for a wide variety of molecules when comparing with other codes. We use our method to perform calculations with the B3LYP exchange-correlation functional for models of myoglobin systems bound with O2 and CO ligands and confirm that the same qualitative behaviour is obtained as when the same myoglobin models are studied with the DFT+U approach which is also available in ONETEP. Finally, we confirm the linear-scaling capability of our method by performing calculations on polyethylene and polyacetylene chains of increasing length.
International Nuclear Information System (INIS)
Dziedzic, J.; Hill, Q.; Skylaris, C.-K.
2013-01-01
We present a method for the calculation of four-centre two-electron repulsion integrals in terms of localised non-orthogonal generalised Wannier functions (NGWFs). Our method has been implemented in the ONETEP program and is used to compute the Hartree-Fock exchange energy component of Hartree-Fock and Density Functional Theory (DFT) calculations with hybrid exchange-correlation functionals. As the NGWFs are optimised in situ in terms of a systematically improvable basis set which is equivalent to plane waves, it is possible to achieve large basis set accuracy in routine calculations. The spatial localisation of the NGWFs allows us to exploit the exponential decay of the density matrix in systems with a band gap in order to compute the exchange energy with a computational effort that increases linearly with the number of atoms. We describe the implementation of this approach in the ONETEP program for linear-scaling first principles quantum mechanical calculations. We present extensive numerical validation of all the steps in our method. Furthermore, we find excellent agreement in energies and structures for a wide variety of molecules when comparing with other codes. We use our method to perform calculations with the B3LYP exchange-correlation functional for models of myoglobin systems bound with O 2 and CO ligands and confirm that the same qualitative behaviour is obtained as when the same myoglobin models are studied with the DFT+U approach which is also available in ONETEP. Finally, we confirm the linear-scaling capability of our method by performing calculations on polyethylene and polyacetylene chains of increasing length
International Nuclear Information System (INIS)
Dominguez, D. S.; Barros, R. C.
2007-01-01
A new spectral nodal method is developed for the solution of one-speed discrete ordinates (SN) problems with isotropic scattering in X, Y-geometry. In this method, the spectral Green's function (SGF) scheme, originally developed for solving SN problems in slab geometry with no spatial truncation error, is generalized to solve the one-dimensional transverse-integrated SN nodal equations wherein we consider linear polynomial approximation for the transverse leakage terms. To solve the resulting SGF-linear nodal (SGF-LN) equations we implement the full-node inversion (FNI) iterative scheme, which uses the best available estimates for the node-entering quantities to evaluate the node angular quantities in all the exiting directions as the equations are swept across the system. We give numerical results that illustrate the accuracy of the SGF-LN method for coarse-mesh calculations. (authors)
Cohen, Dale J; Quinlan, Philip T
2018-02-01
The bounded number-line task has been used extensively to assess the numerical competence of both children and adults. One consistent finding has been that young children display a logarithmic response function, whereas older children and adults display a more linear response function. Traditionally, these log-linear functions have been interpreted as providing a transparent window onto the nature of the participants' psychological representations of quantity (termed here a direct response strategy). Here we show that the direct response strategy produces the log-linear response function regardless of whether the psychological representation of quantity is compressive or expansive. Simply put, the log-linear response function results from task constraints rather than from the psychological representation of quantities. We also demonstrate that a proportion/subtraction response strategy produces response patterns that almost perfectly correlate with the psychological representation of quantity. We therefore urge researchers not to interpret the log-linear response pattern in terms of numerical representation.
Liesen, Jörg
2015-01-01
This self-contained textbook takes a matrix-oriented approach to linear algebra and presents a complete theory, including all details and proofs, culminating in the Jordan canonical form and its proof. Throughout the development, the applicability of the results is highlighted. Additionally, the book presents special topics from applied linear algebra including matrix functions, the singular value decomposition, the Kronecker product and linear matrix equations. The matrix-oriented approach to linear algebra leads to a better intuition and a deeper understanding of the abstract concepts, and therefore simplifies their use in real world applications. Some of these applications are presented in detailed examples. In several ‘MATLAB-Minutes’ students can comprehend the concepts and results using computational experiments. Necessary basics for the use of MATLAB are presented in a short introduction. Students can also actively work with the material and practice their mathematical skills in more than 300 exerc...
Directory of Open Access Journals (Sweden)
M. Zagrouba
2014-01-01
Full Text Available The present work deals with functionally graded materials (FGM isotropic plates in the neighborhood of the first-order symmetric zero group velocity (S1-ZGV point. The mechanical properties of functionally graded material (FGM are assumed to vary continuously through the thickness of the plate and obey a power law of the volume fraction of the constituents. Governing equations for the problem are derived, and the power series technique (PST is employed to solve the recursive equations. The impact of the FGM basic materials properties on S1-ZGV frequency of FGM plate is investigated. Numerical results show that S1-ZGV frequency is comparatively more sensitive to the shear modulus. The gradient coefficient p does not affect the linear dependence of ZGV frequency fo as function of cut-off frequency fc; only the slope is slightly varied.
Czech Academy of Sciences Publication Activity Database
Rontó, Andrei; Šremr, Jiří
2005-01-01
Roč. 2005, č. 3 (2005), s. 235-250 ISSN 1025-5834 Institutional research plan: CEZ:AV0Z10190503 Keywords : functional differential equations in Banach spaces * initial value problem * solid wedge Subject RIV: BA - General Mathematics Impact factor: 0.349, year: 2004
Fracchia, F.; Filippi, Claudia; Amovilli, C.
2012-01-01
We propose a new class of multideterminantal Jastrow–Slater wave functions constructed with localized orbitals and designed to describe complex potential energy surfaces of molecular systems for use in quantum Monte Carlo (QMC). Inspired by the generalized valence bond formalism, we elaborate a
An Analysis of Piecewise-Linear and Convex Value Functions for Active Perception POMDPs
Satsangi, Y.; Whiteson, S.; Spaan, M.T.J.
2015-01-01
In active perception tasks, an agent aims to select actions that reduce its uncertainty about a hidden state. While partially observable Markov decision processes (POMDPs) are a natural model for such problems, reward functions that directly penalize uncertainty in the agent's belief can remove the
Bounds for the probability distribution function of the linear ACD process
Fernandes, Marcelo
2003-01-01
Rio de Janeiro This paper derives both lower and upper bounds for the probability distribution function of stationary ACD(p, q) processes. For the purpose of illustration, I specialize the results to the main parent distributions in duration analysis. Simulations show that the lower bound is much tighter than the upper bound.
Equilibrium arrival times to queues with general service times and non-linear utility functions
DEFF Research Database (Denmark)
Breinbjerg, Jesper
2017-01-01
by a general utility function which is decreasing in the waiting time and service completion time of each customer. Applications of such queueing games range from people choosing when to arrive at a grand opening sale to travellers choosing when to line up at the gate when boarding an airplane. We develop...
In this study density functional theory (DFT) was used to study the adsorption of guaiacol and its initial hydrodeoxygenation (HDO) reactions on Pt(111). Previously reported Brønsted–Evans–Polanyi (BEP) correlations for small open chain molecules are found to be inadequate in estimating the reaction...
Linear functional differential equations possessing solutions with a given growth rate
Czech Academy of Sciences Publication Activity Database
Agarwal, R. P.; Rontó, Andrei
2005-01-01
Roč. 2005, č. 1 (2005), s. 49-65 ISSN 1025-5834 Institutional research plan: CEZ:AV0Z10190503 Keywords : functional differential equation * initial value problem * Cauchy problem Subject RIV: BA - General Mathematics Impact factor: 0.349, year: 2004
Wien2wannier: From linearized augmented plane waves to maximally localized Wannier functions
Czech Academy of Sciences Publication Activity Database
Kuneš, Jan; Arita, R.; Wissgott, Ph.; Toschi, A.; Ikeda, H.; Held, K.
2010-01-01
Roč. 181, č. 11 (2010), s. 1888-1895 ISSN 0010-4655 Institutional research plan: CEZ:AV0Z10100521 Keywords : Wannier function * spin-orbit couping Subject RIV: BM - Solid Matter Physics ; Magnetism Impact factor: 2.300, year: 2010
Single walled carbon nanotubes functionally adsorbed to biopolymers for use as chemical sensors
Johnson, Jr., Alan T.; Gelperin, Alan [Princeton, NJ; Staii, Cristian [Madison, WI
2011-07-12
Chemical field effect sensors comprising nanotube field effect devices having biopolymers such as single stranded DNA functionally adsorbed to the nanotubes are provided. Also included are arrays comprising the sensors and methods of using the devices to detect volatile compounds.
A Comparison of Single Factor Markov-Functional and Multi Factor Market Models
R. Pietersz (Raoul); A.A.J. Pelsser (Antoon)
2005-01-01
textabstractWe compare single factor Markov-functional and multi factor market models for hedging performance of Bermudan swaptions. We show that hedging performance of both models is comparable, thereby supporting the claim that Bermudan swaptions can be adequately riskmanaged with single factor
Functional connectivity in resting-state fMRI: Is linear correlation sufficient?
Czech Academy of Sciences Publication Activity Database
Hlinka, Jaroslav; Paluš, Milan; Vejmelka, Martin; Mantini, D.; Corbetta, M.
2011-01-01
Roč. 54, č. 3 (2011), s. 2218-2225 ISSN 1053-8119 R&D Projects: GA MŠk 7E08027 EU Projects: European Commission(XE) 200728 - BRAINSYNC Institutional research plan: CEZ:AV0Z10300504 Keywords : fMRI * functional connectivity * Gaussianity * nonlinearity * correlation * mutual information Subject RIV: FH - Neurology Impact factor: 5.895, year: 2011
Distribution functions in systems of hard dumbbells and linear hard triatomics near a hard wall.
Boublik, Tomás
2008-12-04
An extension of the theoretical approach to determine the distribution function in the inhomogeneous systems of hard spheres near a planar hard wall (based on the evaluation of the background correlation function in terms of the residual chemical potentials of the hard particle, hard wall, and the corresponding combined body) is extended to inhomogeneous systems of hard dumbbells (HD) and hard triatomics (HT). The perpendicular and parallel orientations of both HD and HT with respect to the hard wall are considered, and the way of the evaluation of the residual chemical potentials in terms of the geometric quantities-a volume, surface area, and the mean curvature integral, divided by 4pi-of a particle, hard wall, and the corresponding combined body is outlined. The inhomogeneous systems hard wall + hard dumbbell with the site-site distance L* = 0.6 and reduced density rho* = 0.491 and hard wall + hard triatomics with L* = 1.6 and packing fraction y = 0.409 are studied, and the obtained distribution functions are compared with simulation data. A fair agreement in the most important range of distances was found.
Meera, M. R.; Joselin Beaula, T.; Rayar, S. L.; Bena Jothy, V.
2017-09-01
NLO materials are gaining importance in technologies such as optical communication, optical computing and dynamic image processing. Many NLO crystals grown by mixing amino acids with various organic and inorganic acids have been reported in the literature. Hence, glycine mixed semi-organic material will be of special interest as a fundamental building block to develop many complex crystals with improved NLO properties. A semi organic Single crystal of Triglycine Phosphate (TGP) which was grown and spectral analysis have been using FTIR and Raman spectral analysis. Natural Bond Orbital Analysis and the atomic natural charges are also predicted. HOMO LUMO energy gap value suggests the possibility of charge transfer within the molecule.
International Nuclear Information System (INIS)
Kazarnovskii, B Ya
2014-01-01
We consider exponential tropical varieties, which appear as analogues of algebraic tropical varieties when we pass from algebraic varieties to varieties given by zero sets of systems of exponential sums. We describe a construction of exponential tropical varieties arising from the action of the complex Monge-Ampère operator on piecewise-linear functions and show that every such variety can be obtained in this way. As an application, we deduce a criterion for the vanishing of the value of the mixed Monge-Ampère operator. This is an analogue and generalization of the criterion for the vanishing of the mixed volume of convex bodies
DEFF Research Database (Denmark)
Senjean, Bruno; Knecht, Stefan; Jensen, Hans Jørgen Aa
2015-01-01
Gross-Oliveira-Kohn density-functional theory (GOK-DFT) for ensembles is, in principle, very attractive but has been hard to use in practice. A practical model based on GOK-DFT for the calculation of electronic excitation energies is discussed. The model relies on two modifications of GOK-DFT: use...... equiensembles. It is shown that such a linear interpolation method (LIM) can be rationalized and that it effectively introduces weight dependence effects. As proof of principle, the LIM has been applied to He, Be, and H2 in both equilibrium and stretched geometries as well as the stretched HeH+ molecule. Very...
Directory of Open Access Journals (Sweden)
Stefan M. Stefanov
2006-01-01
Full Text Available We consider the problem of minimizing a convex separable logarithmic function over a region defined by a convex inequality constraint or linear equality constraint, and two-sided bounds on the variables (box constraints. Such problems are interesting from both theoretical and practical point of view because they arise in some mathematical programming problems as well as in various practical problems such as problems of production planning and scheduling, allocation of resources, decision making, facility location problems, and so forth. Polynomial algorithms are proposed for solving problems of this form and their convergence is proved. Some examples and results of numerical experiments are also presented.
Ramírez-Bahena, Martha H; Vial, Ludovic; Lassalle, Florent; Diel, Benjamin; Chapulliot, David; Daubin, Vincent; Nesme, Xavier; Muller, Daniel
2014-04-01
Linear chromosomes are atypical in bacteria and likely a secondary trait derived from ancestral circular molecules. Within the Rhizobiaceae family, whose genome contains at least two chromosomes, a particularity of Agrobacterium fabrum (formerly A. tumefaciens) secondary chromosome (chromid) is to be linear and hairpin-ended thanks to the TelA protelomerase. Linear topology and telA distributions within this bacterial family was screened by pulse field gel electrophoresis and PCR. In A. rubi, A. larrymoorei, Rhizobium skierniewicense, A. viscosum, Agrobacterium sp. NCPPB 1650, and every genomospecies of the biovar 1/A. tumefaciens species complex (including R. pusense, A. radiobacter, A. fabrum, R. nepotum plus seven other unnamed genomospecies), linear chromid topologies were retrieved concomitantly with telA presence, whereas the remote species A. vitis, Allorhizobium undicola, Rhizobium rhizogenes and Ensifer meliloti harbored a circular chromid as well as no telA gene. Moreover, the telA phylogeny is congruent with that of recA used as a marker gene of the Agrobacterium phylogeny. Collectively, these findings strongly suggest that single acquisition of telA by an ancestor was the founding event of a large and diverse clade characterized by the presence of a linear chromid. This clade, characterized by unusual genome architecture, appears to be a relevant candidate to serve as a basis for a possible redefinition of the controversial Agrobacterium genus. In this respect, investigating telA in sequenced genomes allows to both ascertain the place of concerned strains into Agrobacterium spp. and their actual assignation to species/genomospecies in this genus. Copyright © 2014 Elsevier Inc. All rights reserved.
Pierce, Kenneth E; Wangh, Lawrence J
2007-01-01
Accurate detection of gene sequences in single cells is the ultimate challenge to polymerase chain reaction (PCR) sensitivity. Unfortunately, commonly used conventional and real-time PCR techniques are often too unreliable at that level to provide the accuracy needed for clinical diagnosis. Here we provide details of linear-after-the-exponential-PCR (LATE-PCR), a method similar to asymmetric PCR in the use of primers at different concentrations, but with novel design criteria to ensure high efficiency and specificity. Compared with conventional PCR, LATE-PCR increases the signal strength and allele discrimination capability of oligonucleotide probes such as molecular beacons and reduces variability among replicate samples. The analysis of real-time kinetics of LATE-PCR signals provides a means for improving the accuracy of single cell genetic diagnosis.
Functional and Linearity test system for the LHC Beam Loss Monitoring data acquisition card
Emery, Jonathan; Effinger, E; Leitner, R; Zamantzas, C
2007-01-01
In the frame of the design and development of the beam loss monitoring (BLM) system for the Large Hadron Collider (LHC) a flexible test system has been developed to qualify and verify during design and production the BLM LHC data acquisition card. It permits to test completely the functionalities of the board as well as realizing analog input signal generation to the acquisition card. The system utilize two optical receivers, a Field Programmable Gate Array (FPGA), eights flexible current sources and a Universal Serial Bus (USB) to link it to a PC where a software written in LabWindows/CVIÂ© (National Instruments) runs. It includes an important part of the measurement processing developed for the BLM in the future LHC accelerator. It is called Beam Loss Electronic Current to Frequency Tester (BLECFT).
International Nuclear Information System (INIS)
Liebrecht, M.
2014-01-01
The importance of van der Waals interactions in many diverse research fields such as, e. g., polymer science, nano--materials, structural biology, surface science and condensed matter physics created a high demand for efficient and accurate methods that can describe van der Waals interactions from first principles. These methods should be able to deal with large and complex systems to predict functions and properties of materials that are technologically and biologically relevant. Van der Waals interactions arise due to quantum mechanical correlation effects and finding appropriate models an numerical techniques to describe this type of interaction is still an ongoing challenge in electronic structure and condensed matter theory. This thesis introduces a new variational approach to obtain intermolecular interaction potentials between clusters and helium atoms by means of density functional theory and linear response methods. It scales almost linearly with the number of electrons and can therefore be applied to much larger systems than standard quantum chemistry techniques. The main focus of this work is the development of an ab-initio method to account for London dispersion forces, which are purely attractive and dominate the interaction of non--polar atoms and molecules at large distances. (author) [de
Directory of Open Access Journals (Sweden)
S. Helama
2009-03-01
Full Text Available Tree-rings tell of past climates. To do so, tree-ring chronologies comprising numerous climate-sensitive living-tree and subfossil time-series need to be "transferred" into palaeoclimate estimates using transfer functions. The purpose of this study is to compare different types of transfer functions, especially linear and nonlinear algorithms. Accordingly, multiple linear regression (MLR, linear scaling (LSC and artificial neural networks (ANN, nonlinear algorithm were compared. Transfer functions were built using a regional tree-ring chronology and instrumental temperature observations from Lapland (northern Finland and Sweden. In addition, conventional MLR was compared with a hybrid model whereby climate was reconstructed separately for short- and long-period timescales prior to combining the bands of timescales into a single hybrid model. The fidelity of the different reconstructions was validated against instrumental climate data. The reconstructions by MLR and ANN showed reliable reconstruction capabilities over the instrumental period (AD 1802–1998. LCS failed to reach reasonable verification statistics and did not qualify as a reliable reconstruction: this was due mainly to exaggeration of the low-frequency climatic variance. Over this instrumental period, the reconstructed low-frequency amplitudes of climate variability were rather similar by MLR and ANN. Notably greater differences between the models were found over the actual reconstruction period (AD 802–1801. A marked temperature decline, as reconstructed by MLR, from the Medieval Warm Period (AD 931–1180 to the Little Ice Age (AD 1601–1850, was evident in all the models. This decline was approx. 0.5°C as reconstructed by MLR. Different ANN based palaeotemperatures showed simultaneous cooling of 0.2 to 0.5°C, depending on algorithm. The hybrid MLR did not seem to provide further benefit above conventional MLR in our sample. The robustness of the conventional MLR over the
Krak, Michael D.; Singh, Rajendra
2017-02-01
The chief goal of this paper is to propose a new laboratory experiment that exhibits the step-response of a torsional system containing one or two controlled clearances. This work is motivated by the disadvantages of prior large-scale experiments which utilize production vehicle drivelines and their components with significant real-life complexities. The conceptual and physical design features, which include sizing, modal properties, excitation, and instrumentation, are discussed with the goal of creating a controlled experiment. Like prior literature, a step-down torque excitation is selected and all analyses are performed on the acceleration signals to observe vibro-impact in the time domain. Typical measurements (for both the single and dual-clearance configurations) exhibit rich non-linear behavior, including the double-sided impact regime and a time-varying oscillatory period. Additionally, new measurements are compared to predictions from simple reduced order non-linear models to verify the feasibility of the proposed experiment. Finally, the utility of this experiment is demonstrated by comparing its measurements to a prior large-scale experiment that accommodates a production vehicle clutch damper with multiple stages. The hardening and softening effects in both experiments are discussed in the context of double and single-sided impacts as well as the oscillatory periods that vary with time.
DEFF Research Database (Denmark)
Hvid, L G; Gejl, Kasper Degn; Bech, R D
2013-01-01
Prolonged muscle activity impairs whole-muscle performance and function. However, little is known about the effects of prolonged muscle activity on the contractile function of human single muscle fibres. The purpose of this study was to investigate the effects of prolonged exercise and subsequent...
Ryno, Sean
2016-05-18
Non-covalent interactions determine in large part the thermodynamic aspects of molecular packing in organic crystals. Using a combination of symmetry-adapted perturbation theory (SAPT) and classical multipole electrostatics, we describe the interaction potential energy surfaces for dimers of the oligoacene family, from benzene to hexacene. An analysis of these surfaces and a thorough assessment of dimers extracted from the reported crystal structures underline that high-order interactions (i.e., three-body non-additive interactions) must be considered in order to rationalize the details of the crystal structures. A comparison of the SAPT electrostatic energy with the multipole interaction energy demonstrates the importance of the contribution of charge penetration, which is shown to account for up to 50% of the total interaction energy in dimers extracted from the experimental single crystals; in the case of the most stable co-facial model dimers, this contribution is even larger than the total interaction energy. Our results highlight the importance of taking account of charge penetration in studies of the larger oligoacenes.
Zwieniecki, Maciej A; Boyce, C Kevin; Holbrook, N Michele
2004-10-01
Morphological diversity of leaves is usually quantified with geometrical characters, while in many cases a simple set of biophysical parameters are involved in constraining size and shape. One of the main physiological functions of the leaf is transpiration and thus one can expect that leaf hydraulic parameters can be used to predict potential morphologies, although with the caveat that morphology in turn influences physiological parameters including light interception and boundary layer thickness and thereby heat transfer and net photosynthesis. An iterative model was used to determine the relative sizes and shapes that are functionally possible for single-veined leaves as defined by their ability to supply the entire leaf lamina with sufficient water to prevent stomatal closure. The model variables include the hydraulic resistances associated with vein axial and radial transport, as well as with water movement through the mesophyll and the leaf surface. The four parameters included in the model are sufficient to define a hydraulic functional design space that includes all single-veined leaf shapes found in nature, including scale-, awl- and needle-like morphologies. This exercise demonstrates that hydraulic parameters have dissimilar effects: surface resistance primarily affects leaf size, while radial and mesophyll resistances primarily affect leaf shape. These distinctions between hydraulic parameters, as well as the differential accessibility of different morphologies, might relate to the convergent evolutionary patterns seen in a variety of fossil lineages concerning overall morphology and anatomical detail that frequently have evolved in linear and simple multi-veined leaves.
Olive, David J
2017-01-01
This text covers both multiple linear regression and some experimental design models. The text uses the response plot to visualize the model and to detect outliers, does not assume that the error distribution has a known parametric distribution, develops prediction intervals that work when the error distribution is unknown, suggests bootstrap hypothesis tests that may be useful for inference after variable selection, and develops prediction regions and large sample theory for the multivariate linear regression model that has m response variables. A relationship between multivariate prediction regions and confidence regions provides a simple way to bootstrap confidence regions. These confidence regions often provide a practical method for testing hypotheses. There is also a chapter on generalized linear models and generalized additive models. There are many R functions to produce response and residual plots, to simulate prediction intervals and hypothesis tests, to detect outliers, and to choose response trans...
Fluidic Logic Used in a Systems Approach to Enable Integrated Single-cell Functional Analysis
Directory of Open Access Journals (Sweden)
Naveen Ramalingam
2016-09-01
Full Text Available The study of single cells has evolved over the past several years to include expression and genomic analysis of an increasing number of single cells. Several studies have demonstrated wide-spread variation and heterogeneity within cell populations of similar phenotype. While the characterization of these populations will likely set the foundation for our understanding of genomic- and expression-based diversity, it will not be able to link the functional differences of a single cell to its underlying genomic structure and activity. Currently, it is difficult to perturb single cells in a controlled environment, monitor and measure the response due to perturbation, and link these response measurements to downstream genomic and transcriptomic analysis. In order to address this challenge, we developed a platform to integrate and miniaturize many of the experimental steps required to study single-cell function. The heart of this platform is an elastomer-based Integrated Fluidic Circuit (IFC that uses fluidic logic to select and sequester specific single cells based on a phenotypic trait for downstream experimentation. Experiments with sequestered cells that have been performed include on-chip culture, exposure to a variety of stimulants, and post-exposure image-based response analysis, followed by preparation of the mRNA transcriptome for massively parallel sequencing analysis. The flexible system embodies experimental design and execution that enable routine functional studies of single cells.
DEFF Research Database (Denmark)
Stroescu, Ionut Emanuel; Sørensen, Lasse; Frigaard, Peter Bak
2016-01-01
A non-linear stretching method was implemented for stream function theory to solve wave kinematics for physical conditions close to breaking waves in shallow waters, with wave heights limited by the water depth. The non-linear stretching method proves itself robust, efficient and fast, showing good...
Directory of Open Access Journals (Sweden)
Huang Jian-dong
2011-04-01
Full Text Available Abstract Background SXT is an integrating conjugative element (ICE originally isolated from Vibrio cholerae, the bacterial pathogen that causes cholera. It houses multiple antibiotic and heavy metal resistance genes on its ca. 100 kb circular double stranded DNA (dsDNA genome, and functions as an effective vehicle for the horizontal transfer of resistance genes within susceptible bacterial populations. Here, we characterize the activities of an alkaline exonuclease (S066, SXT-Exo and single strand annealing protein (S065, SXT-Bet encoded on the SXT genetic element, which share significant sequence homology with Exo and Bet from bacteriophage lambda, respectively. Results SXT-Exo has the ability to degrade both linear dsDNA and single stranded DNA (ssDNA molecules, but has no detectable endonuclease or nicking activities. Adopting a stable trimeric arrangement in solution, the exonuclease activities of SXT-Exo are optimal at pH 8.2 and essentially require Mn2+ or Mg2+ ions. Similar to lambda-Exo, SXT-Exo hydrolyzes dsDNA with 5'- to 3'-polarity in a highly processive manner, and digests DNA substrates with 5'-phosphorylated termini significantly more effectively than those lacking 5'-phosphate groups. Notably, the dsDNA exonuclease activities of both SXT-Exo and lambda-Exo are stimulated by the addition of lambda-Bet, SXT-Bet or a single strand DNA binding protein encoded on the SXT genetic element (S064, SXT-Ssb. When co-expressed in E. coli cells, SXT-Bet and SXT-Exo mediate homologous recombination between a PCR-generated dsDNA fragment and the chromosome, analogous to RecET and lambda-Bet/Exo. Conclusions The activities of the SXT-Exo protein are consistent with it having the ability to resect the ends of linearized dsDNA molecules, forming partially ssDNA substrates for the partnering SXT-Bet single strand annealing protein. As such, SXT-Exo and SXT-Bet may function together to repair or process SXT genetic elements within infected V
DEFF Research Database (Denmark)
Eriksen, Troels K; Karlsen, Eva; Spanget-Larsen, Jens
2015-01-01
The title compounds were investigated by means of Linear Dichroism (LD) IR spectroscopy on samples partially aligned in uniaxially stretched low-density polyethylene and by density functional theory calculations. Satisfactory overall agreement between observed and calculated vibrational wavenumbers...
Directory of Open Access Journals (Sweden)
Antônio M. Da Silva Jr.
2009-01-01
Full Text Available Structure and first hyperpolarizability for a series of armchair a(5,5 chemically modified carbon nanotubes (CNT were calculated at semiempirical and density functional levels of theory. The 4,4´-substituted stilbenes were selected as chromophore with substituents at position 4´ set to X=NO2, H, Cl, OH and NH2. The calculated values for static first hyperpolarizability (β were almost linearly dependent on the electronic effect of the group X, increasing from NO2 to NH2. At DFT level the effect of inserting the chromophore in the CNT surface was to enhance the β value up to 70% relative to the free 4,4´-substituted stilbene.
Directory of Open Access Journals (Sweden)
Kunwar Aditya
2016-11-01
Full Text Available The extended describing function (EDF is a well-known method for modelling resonant converters due to its high accuracy. However, it requires complex mathematical formulation effort. This paper presents a simplified non-linear mathematical model of series-series (SS compensated inductive power transfer (IPT system, considering zero-voltage switching in the inverter. This simplified mathematical model permits the user to derive the small-signal model using the EDF method, with less computational effort, while maintaining the accuracy of an actual physical model. The derived model has been verified using a frequency sweep method in PLECS. The small-signal model has been used to design the voltage loop controller for a SS compensated IPT system. The designed controller was implemented on a 3.6 kW experimental setup, to test its robustness.
International Nuclear Information System (INIS)
Marbach, P.; Goetz, U.; Veteau, J.P.; Wagner, H.
1978-01-01
The paper presents a new mathematical model for curve-fitting in radioimmunoassay (RIA) by means of non-linearized response functions. The computer program developed is applicable to any protein-binding assay performed to date and is demonstrated together with a RIA for rat-growth hormone. This RIA is sensitive to 2ng/ml, reproducible and shows no cross-reaction, particularly with prolactin. The assay is performed on the modified automatic module system RIA-E 6000. This system, which is especially designed for a high throughput of samples, was modified so that the filtration unit is replaced by a centrifugation step which allows the use of a conventional gamma-counter. (author)
DEFF Research Database (Denmark)
Malin, Steven K; Solomon, Thomas; Blaszczak, Alecia
2013-01-01
intervention (5d/wk for 60min at ~85% HRmax). Insulin and C-peptide (n=23) responses to an OGTT were used to define the first and second phase disposition index (DI; beta-cell function = glucose-stimulated insulin secretion x clamp-derived insulin sensitivity). Maximum oxygen consumption (VO2max) and body...... composition (dual-energy x-ray absorptiometry and computed tomography) were also measured before and after the intervention. Exercise dose was computed using VO2-heart rate derived linear-regression equations. Subjects expended 474.5±8.8 kcal/session (2372.5±44.1 kcal/week) during the intervention, and lost...
Nie, Xiaobing; Zheng, Wei Xing
2015-05-01
This paper is concerned with the problem of coexistence and dynamical behaviors of multiple equilibrium points for neural networks with discontinuous non-monotonic piecewise linear activation functions and time-varying delays. The fixed point theorem and other analytical tools are used to develop certain sufficient conditions that ensure that the n-dimensional discontinuous neural networks with time-varying delays can have at least 5(n) equilibrium points, 3(n) of which are locally stable and the others are unstable. The importance of the derived results is that it reveals that the discontinuous neural networks can have greater storage capacity than the continuous ones. Moreover, different from the existing results on multistability of neural networks with discontinuous activation functions, the 3(n) locally stable equilibrium points obtained in this paper are located in not only saturated regions, but also unsaturated regions, due to the non-monotonic structure of discontinuous activation functions. A numerical simulation study is conducted to illustrate and support the derived theoretical results. Copyright © 2015 Elsevier Ltd. All rights reserved.
Directory of Open Access Journals (Sweden)
Cyril R Pernet
2014-01-01
Full Text Available This tutorial presents several misconceptions related to the use the General Linear Model (GLM in functional Magnetic Resonance Imaging (fMRI. The goal is not to present mathematical proofs but to educate using examples and computer code (in Matlab. In particular, I address issues related to (i model parameterization (modelling baseline or null events and scaling of the design matrix; (ii hemodynamic modelling using basis functions, and (iii computing percentage signal change. Using a simple controlled block design and an alternating block design, I first show why 'baseline' should not be modelled (model over-parameterization, and how this affects effect sizes. I also show that, depending on what is tested; over-parameterization does not necessarily impact upon statistical results. Next, using a simple periodic vs. random event related design, I show how the haemodynamic model (haemodynamic function only or using derivatives can affects parameter estimates, as well as detail the role of orthogonalization. I then relate the above results to the computation of percentage signal change. Finally, I discuss how these issues affect group analysis and give some recommendations.
12-month efficacy of a single radiofrequency ablation on autonomously functioning thyroid nodules.
Bernardi, Stella; Stacul, Fulvio; Michelli, Andrea; Giudici, Fabiola; Zuolo, Giulia; de Manzini, Nicolò; Dobrinja, Chiara; Zanconati, Fabrizio; Fabris, Bruno
2017-09-01
Radiofrequency ablation has been advocated as an alternative to radioiodine and/or surgery for the treatment of autonomously functioning benign thyroid nodules. However, only a few studies have measured radiofrequency ablation efficacy on autonomously functioning benign thyroid nodules. The aim of this work was to evaluate the 12-month efficacy of a single session of radiofrequency ablation (performed with the moving shot technique) on solitary autonomously functioning benign thyroid nodules. Thirty patients with a single, benign autonomously functioning benign thyroid nodules, who were either unwilling or ineligible to undergo surgery and radioiodine, were treated with radiofrequency ablation between April 2012 and May 2015. All the patients underwent a single radiofrequency ablation, performed with the 18-gauge needle and the moving shot technique. Clinical, laboratory, and ultrasound evaluations were scheduled at baseline, and after 1, 3, 6, and 12 months from the procedure. A single radiofrequency ablation reduced thyroid nodule volume by 51, 63, 69, and 75 % after 1, 3, 6, and 12 months, respectively. This was associated with a significant improvement of local cervical discomfort and cosmetic score. As for thyroid function, 33 % of the patients went into remission after 3 months, 43 % after 6 months, and 50 % after 12 months from the procedure. This study demonstrates that a single radiofrequency ablation allowed us to withdraw anti-thyroid medication in 50 % of the patients, who remained euthyroid afterwards. This study shows that a single radiofrequency ablation was effective in 50 % of patients with autonomously functioning benign thyroid nodules. Patients responded gradually to the treatment. It is possible that longer follow-up studies might show greater response rates.
Single proteins that serve linked functions in intracellular and extracellular microenvironments
Energy Technology Data Exchange (ETDEWEB)
Radisky, Derek C.; Stallings-Mann, Melody; Hirai, Yohei; Bissell, Mina J.
2009-06-03
Maintenance of organ homeostasis and control of appropriate response to environmental alterations requires intimate coordination of cellular function and tissue organization. An important component of this coordination may be provided by proteins that can serve distinct, but linked, functions on both sides of the plasma membrane. Here we present a novel hypothesis in which non-classical secretion can provide a mechanism through which single proteins can integrate complex tissue functions. Single genes can exert a complex, dynamic influence through a number of different processes that act to multiply the function of the gene product(s). Alternative splicing can create many different transcripts that encode proteins of diverse, even antagonistic, function from a single gene. Posttranslational modifications can alter the stability, activity, localization, and even basic function of proteins. A protein can exist in different subcellular localizations. More recently, it has become clear that single proteins can function both inside and outside the cell. These proteins often lack defined secretory signal sequences, and transit the plasma membrane by mechanisms separate from the classical ER/Golgi secretory process. When examples of such proteins are examined individually, the multifunctionality and lack of a signal sequence are puzzling - why should a protein with a well known function in one context function in such a distinct fashion in another? We propose that one reason for a single protein to perform intracellular and extracellular roles is to coordinate organization and maintenance of a global tissue function. Here, we describe in detail three specific examples of proteins that act in this fashion, outlining their specific functions in the extracellular space and in the intracellular space, and we discuss how these functions may be linked. We present epimorphin/syntaxin-2, which may coordinate morphogenesis of secretory organs (as epimorphin) with control of
International Nuclear Information System (INIS)
Zhou, Junle; Chen, Lingen; Ding, Zemin; Sun, Fengrui
2016-01-01
Ecological performance of a single resonance ESE heat engine with heat leakage is conducted by applying finite time thermodynamics. By introducing Nielsen function and numerical calculations, expressions about power output, efficiency, entropy generation rate and ecological objective function are derived; relationships between ecological objective function and power output, between ecological objective function and efficiency as well as between power output and efficiency are demonstrated; influences of system parameters of heat leakage, boundary energy and resonance width on the optimal performances are investigated in detail; a specific range of boundary energy is given as a compromise to make ESE heat engine system work at optimal operation regions. Comparing performance characteristics with different optimization objective functions, the significance of selecting ecological objective function as the design objective is clarified specifically: when changing the design objective from maximum power output into maximum ecological objective function, the improvement of efficiency is 4.56%, while the power output drop is only 2.68%; when changing the design objective from maximum efficiency to maximum ecological objective function, the improvement of power output is 229.13%, and the efficiency drop is only 13.53%. - Highlights: • An irreversible single resonance energy selective electron heat engine is studied. • Heat leakage between two reservoirs is considered. • Power output, efficiency and ecological objective function are derived. • Optimal performance comparison for three objective functions is carried out.
El Haouari, M.; Talbi, A.; Feddi, E.; El Ghazi, H.; Oukerroum, A.; Dujardin, F.
2017-01-01
The hydrostatic pressure influence on the binding energy and on the optical properties (linear and third nonlinear) associated to the 1 s - 1 p intersubband transition of single dopant in a AlAs / GaAs spherical core/shell structure is investigated. The combined effects of the problem variables such as the core and shell sizes, the donor position in the structure and the pressure dependence of the physical parameters of the material have been analyzed. Our calculations are performed in the framework of the effective mass approximation and the energies are obtained by using a variational method. The results show that the linear and nonlinear parts of the absorption coefficient and the refractive index associated to the intersubband 1 s - 1 p transition undergo important changes. There are several interesting results to point out such as the shift of the absorption coefficients and refractive index to high values of photon energy. Another significant result is that the donor position considerably affects the optical properties and their corresponding amplitude.
Baba, Toshimi; Gotoh, Yusaku; Yamaguchi, Satoshi; Nakagawa, Satoshi; Abe, Hayato; Masuda, Yutaka; Kawahara, Takayoshi
2017-08-01
This study aimed to evaluate a validation reliability of single-step genomic best linear unbiased prediction (ssGBLUP) with a multiple-lactation random regression test-day model and investigate an effect of adding genotyped cows on the reliability. Two data sets for test-day records from the first three lactations were used: full data from February 1975 to December 2015 (60 850 534 records from 2 853 810 cows) and reduced data cut off in 2011 (53 091 066 records from 2 502 307 cows). We used marker genotypes of 4480 bulls and 608 cows. Genomic enhanced breeding values (GEBV) of 305-day milk yield in all the lactations were estimated for at least 535 young bulls using two marker data sets: bull genotypes only and both bulls and cows genotypes. The realized reliability (R 2 ) from linear regression analysis was used as an indicator of validation reliability. Using only genotyped bulls, R 2 was ranged from 0.41 to 0.46 and it was always higher than parent averages. The very similar R 2 were observed when genotyped cows were added. An application of ssGBLUP to a multiple-lactation random regression model is feasible and adding a limited number of genotyped cows has no significant effect on reliability of GEBV for genotyped bulls. © 2016 Japanese Society of Animal Science.
Enhanced mechanical properties of single-walled carbon nanotubes due to chemical functionalization.
He, X Q; Kuang, Y D; Chen, C Y; Li, G Q
2009-05-27
Recent studies have shown that the chemical functionalization of carbon nanotubes weakens most of their mechanical properties such as the critical buckling force under compression and the critical buckling moment under torsion. However, the mechanical properties including the critical bending curvature and the critical bending moment of single-walled carbon nanotubes can be improved after functionalization as shown in this paper. The molecular mechanics simulations reveal that there exists an optimum functionalization degree at which the critical curvatures of the functionalized carbon nanotubes reaches its maximum value. The critical curvatures of the carbon nanotubes increase with increasing functionalization degree below the optimum value, while the critical curvatures change little as the functionalization degree is beyond the optimum value. The influences of the bending directions and the aspect ratios of the functionalized carbon nanotubes are also examined via molecular mechanics simulations.
Linear Logical Voting Protocols
DEFF Research Database (Denmark)
DeYoung, Henry; Schürmann, Carsten
2012-01-01
. In response, we promote linear logic as a high-level language for both specifying and implementing voting protocols. Our linear logical specifications of the single-winner first-past-the-post (SW- FPTP) and single transferable vote (STV) protocols demonstrate that this approach leads to concise...
International Nuclear Information System (INIS)
Rodrigues Junior, W.A.
A calculation of the electrical conductivity for Hubbard materials is presented which is valid when U/t >> 1 (U being the Coulomb repulsion and t the nearest neighbor hopping energy) for arbitrary electron concentration and temperature. The derivation emploies the single particle Green's functions with real and imaginary times instead of the usual two-particle real time Green's function. The result is compared with the experimental data available for some organic charge transfer salts [pt
Directory of Open Access Journals (Sweden)
Ji-Hyung Shin
2006-09-01
Full Text Available We describe the R function LDheatmap( which produces a graphical display, as a heat map, of pairwise linkage disequilibrium measurements between single nucleotide polymorphisms within a genomic region. LDheatmap( uses the grid graphics system, an alternative to the traditional R graphics system. The features of the LDheatmap( function and the use of tools from the grid package to modify heat maps are illustrated by examples.
International Nuclear Information System (INIS)
Lerma H, S.
2010-01-01
The structure of the exact wave function of the isovectorial pairing Hamiltonian with nondegenerate single-particle levels is discussed. The way that the single-particle splittings break the quartet condensate solution found for N=Z nuclei in a single degenerate level is established. After a brief review of the exact solution, the structure of the wave function is analyzed and some particular cases are considered where a clear interpretation of the wave function emerges. An expression for the exact wave function in terms of the isospin triplet of pair creators is given. The ground-state wave function is analyzed as a function of pairing strength, for a system of four protons and four neutrons. For small and large values of the pairing strength a dominance of two-pair (quartets) scalar couplings is found, whereas for intermediate values enhancements of the nonscalar couplings are obtained. A correlation of these enhancements with the creation of Cooper-like pairs is observed.
Lorenzo, C F; Hartley, T T; Malti, R
2013-05-13
A new and simplified method for the solution of linear constant coefficient fractional differential equations of any commensurate order is presented. The solutions are based on the R-function and on specialized Laplace transform pairs derived from the principal fractional meta-trigonometric functions. The new method simplifies the solution of such fractional differential equations and presents the solutions in the form of real functions as opposed to fractional complex exponential functions, and thus is directly applicable to real-world physics.
Yan, Rui; Moon, Seonah; Kenny, Samuel J; Xu, Ke
2018-03-20
As an elegant integration of the spatial and temporal dimensions of single-molecule fluorescence, single-molecule localization microscopy (SMLM) overcomes the diffraction-limited resolution barrier of optical microscopy by localizing single molecules that stochastically switch between fluorescent and dark states over time. While this type of super-resolution microscopy (SRM) technique readily achieves remarkable spatial resolutions of ∼10 nm, it typically provides no spectral information. Meanwhile, current scanning-based single-location approaches for mapping the positions and spectra of single molecules are limited by low throughput and are difficult to apply to densely labeled (bio)samples. In this Account, we summarize the rationale, design, and results of our recent efforts toward the integration of the spectral dimension of single-molecule fluorescence with SMLM to achieve spectrally resolved SMLM (SR-SMLM) and functional SRM ( f-SRM). By developing a wide-field scheme for spectral measurement and implementing single-molecule fluorescence on-off switching typical of SMLM, we first showed that in densely labeled (bio)samples it is possible to record the fluorescence spectra and positions of millions of single molecules synchronously within minutes, giving rise to ultrahigh-throughput single-molecule spectroscopy and SR-SMLM. This allowed us to first show statistically that for many dyes, single molecules of the same species exhibit near identical emission in fixed cells. This narrow distribution of emission wavelengths, which contrasts markedly with previous results at solid surfaces, allowed us to unambiguously identify single molecules of spectrally similar dyes. Crosstalk-free, multiplexed SRM was thus achieved for four dyes that were merely 10 nm apart in emission spectrum, with the three-dimensional SRM images of all four dyes being automatically aligned within one image channel. The ability to incorporate single-molecule fluorescence measurement with
Wang, Hui; Sui, Weiguo; Xue, Wen; Wu, Junyong; Chen, Jiejing; Dai, Yong
2014-09-01
Immunoglobulin A nephropathy (IgAN) is a complex trait regulated by the interaction among multiple physiologic regulatory systems and probably involving numerous genes, which leads to inconsistent findings in genetic studies. One possibility of failure to replicate some single-locus results is that the underlying genetics of IgAN nephropathy is based on multiple genes with minor effects. To learn the association between 23 single nucleotide polymorphisms (SNPs) in 14 genes predisposing to chronic glomerular diseases and IgAN in Han males, the 23 SNPs genotypes of 21 Han males were detected and analyzed with a BaiO gene chip, and their associations were analyzed with univariate analysis and multiple linear regression analysis. Analysis showed that CTLA4 rs231726 and CR2 rs1048971 revealed a significant association with IgAN. These findings support the multi-gene nature of the etiology of IgAN and propose a potential gene-gene interactive model for future studies.
Hall-Aspland, S A; Hall, A P; Rogers, T L
2005-03-01
Mixing models are used to determine diets where the number of prey items are greater than one, however, the limitation of the linear mixing method is the lack of a unique solution when the number of potential sources is greater than the number (n) of isotopic signatures +1. Using the IsoSource program all possible combinations of each source contribution (0-100%) in preselected small increments can be examined and a range of values produced for each sample analysed. We propose the use of a Moore Penrose (M-P) pseudoinverse, which involves the inverse of a 2x2 matrix. This is easily generalized to the case of a single isotope with (p) prey sources and produces a specific solution. The Antarctic leopard seal (Hydrurga leptonyx) was used as a model species to test this method. This seal is an opportunistic predator, which preys on a wide range of species including seals, penguins, fish and krill. The M-P method was used to determine the contribution to diet from each of the four prey types based on blood and fur samples collected over three consecutive austral summers. The advantage of the M-P method was the production of a vector of fractions f for each predator isotopic value, allowing us to identify the relative variation in dietary proportions. Comparison of the calculated fractions from this method with 'means' from IsoSource allowed confidence in the new approach for the case of a single isotope, N.
Single-molecule, structural and functional studies of Listeria monocytogenes Ca2+-ATPase
DEFF Research Database (Denmark)
Dyla, Mateusz
-ion transport (e.g. H+ for Ca2+-ATPases). P-type ATPases undergo major conformational changes during their functional cycle, as has been learned from a wealth of atomic-resolution X-ray crystallographic structures (4). In this work, single-molecule, structural and functional studies were employed to investigate...... the dynamics and mechanism of the transport cycle of P-type ATPase at a single molecule level. A representative P-type ATPase, the Listeria monocytogenes Ca2+-ATPase (LMCA1) was engineered and characterized to facilitate smFRET studies. Pairs of cysteines were introduced and reacted with maleimide derivatives...... transitions to the E2 state triggered by ATP binding and phosphorylation were very brief, and could only be characterized in a dephosphorylation-deficient LMCA1 mutant. Owing to a spontaneous dephosphorylation of this mutant, full transport cycles at a single-molecule resolution were observed for the first...
Single walled carbon nanotubes with functionally adsorbed biopolymers for use as chemical sensors
Johnson, Jr., Alan T
2013-12-17
Chemical field effect sensors comprising nanotube field effect devices having biopolymers such as single stranded DNA or RNA functionally adsorbed to the nanotubes are provided. Also included are arrays comprising the sensors and methods of using the devices to detect volatile compounds.
Four days of muscle disuse impairs single fiber contractile function in young and old healthy men
DEFF Research Database (Denmark)
Hvid, Lars G; Suetta, Charlotte; Aagaard, Per
2013-01-01
The purpose of the study was to investigate the effects of 4days of disuse (knee brace) on contractile function of isolated vastus lateralis fibers (n=486) from 11 young (24.3±0.9yrs) and 11 old (67.2±1.0yrs) healthy men having comparable levels of physical activity. Prior to disuse single fiber...
Juliet sheela, K.; Subramanian, P.
2018-04-01
A transparent and good optical quality semi organic single crystal of vanadium doped potassium succinate-succinic acid (KSSA) was synthesized by slow evaporation technique at room temperature. The structural perfection was supported by the powder XRD of the KSSA-VO2+ single crystal. Optical behavior of the material was discovered from the absorption and transmission spectra of UV-vis-NIR characterization. Functional group and presence of metal ion in the specimen are depicted from FTIR traces. From the photoluminescence studies, emission of wavelength in the violet region (418 nm) at the excitation of 243 nm could be ascertained. EDAX, SEM measurements identify presence of elements and pictures the step-line growth and the imperfection presents in the grown crystal. EPR analysis extracts the information about the local site symmetry around the impurity ion, molecular orbital coefficients, admixture coefficients and ground state wave function of VO2+ doped KSSA single crystal. Second harmonic generation (SHG) efficiency of the grown crystal was investigated to explore the NLO characteristic of the material.
Caballero Gaudes, César; Petridou, Natalia; Francis, Susan T; Dryden, Ian L; Gowland, Penny A
2013-03-01
The ability to detect single trial responses in functional magnetic resonance imaging (fMRI) studies is essential, particularly if investigating learning or adaptation processes or unpredictable events. We recently introduced paradigm free mapping (PFM), an analysis method that detects single trial blood oxygenation level dependent (BOLD) responses without specifying prior information on the timing of the events. PFM is based on the deconvolution of the fMRI signal using a linear hemodynamic convolution model. Our previous PFM method (Caballero-Gaudes et al., 2011: Hum Brain Mapp) used the ridge regression estimator for signal deconvolution and required a baseline signal period for statistical inference. In this work, we investigate the application of sparse regression techniques in PFM. In particular, a novel PFM approach is developed using the Dantzig selector estimator, solved via an efficient homotopy procedure, along with statistical model selection criteria. Simulation results demonstrated that, using the Bayesian information criterion to select the regularization parameter, this method obtains high detection rates of the BOLD responses, comparable with a model-based analysis, but requiring no information on the timing of the events and being robust against hemodynamic response function variability. The practical operation of this sparse PFM method was assessed with single-trial fMRI data acquired at 7T, where it automatically detected all task-related events, and was an improvement on our previous PFM method, as it does not require the definition of a baseline state and amplitude thresholding and does not compromise on specificity and sensitivity. Copyright © 2011 Wiley Periodicals, Inc.
Wapenaar, Kees
2017-06-01
A unified scalar wave equation is formulated, which covers three-dimensional (3D) acoustic waves, 2D horizontally-polarised shear waves, 2D transverse-electric EM waves, 2D transverse-magnetic EM waves, 3D quantum-mechanical waves and 2D flexural waves. The homogeneous Green's function of this wave equation is a combination of the causal Green's function and its time-reversal, such that their singularities at the source position cancel each other. A classical representation expresses this homogeneous Green's function as a closed boundary integral. This representation finds applications in holographic imaging, time-reversed wave propagation and Green's function retrieval by cross correlation. The main drawback of the classical representation in those applications is that it requires access to a closed boundary around the medium of interest, whereas in many practical situations the medium can be accessed from one side only. Therefore, a single-sided representation is derived for the homogeneous Green's function of the unified scalar wave equation. Like the classical representation, this single-sided representation fully accounts for multiple scattering. The single-sided representation has the same applications as the classical representation, but unlike the classical representation it is applicable in situations where the medium of interest is accessible from one side only.
Automatic single- and multi-label enzymatic function prediction by machine learning
Directory of Open Access Journals (Sweden)
Shervine Amidi
2017-03-01
Full Text Available The number of protein structures in the PDB database has been increasing more than 15-fold since 1999. The creation of computational models predicting enzymatic function is of major importance since such models provide the means to better understand the behavior of newly discovered enzymes when catalyzing chemical reactions. Until now, single-label classification has been widely performed for predicting enzymatic function limiting the application to enzymes performing unique reactions and introducing errors when multi-functional enzymes are examined. Indeed, some enzymes may be performing different reactions and can hence be directly associated with multiple enzymatic functions. In the present work, we propose a multi-label enzymatic function classification scheme that combines structural and amino acid sequence information. We investigate two fusion approaches (in the feature level and decision level and assess the methodology for general enzymatic function prediction indicated by the first digit of the enzyme commission (EC code (six main classes on 40,034 enzymes from the PDB database. The proposed single-label and multi-label models predict correctly the actual functional activities in 97.8% and 95.5% (based on Hamming-loss of the cases, respectively. Also the multi-label model predicts all possible enzymatic reactions in 85.4% of the multi-labeled enzymes when the number of reactions is unknown. Code and datasets are available at https://figshare.com/s/a63e0bafa9b71fc7cbd7.
Sample, Susannah J; Behan, Mary; Smith, Lesley; Oldenhoff, William E; Markel, Mark D; Kalscheur, Vicki L; Hao, Zhengling; Miletic, Vjekoslav; Muir, Peter
2008-09-01
Regulation of load-induced bone formation is considered a local phenomenon controlled by osteocytes, although it has also been hypothesized that functional adaptation may be neuronally regulated. The aim of this study was to examine bone formation in multiple bones, in response to loading of a single bone, and to determine whether adaptation may be neuronally regulated. Load-induced responses in the left and right ulnas and humeri were determined after loading of the right ulna in male Sprague-Dawley rats (69 +/- 16 days of age). After a single period of loading at -760-, -2000-, or -3750-microepsilon initial peak strain, rats were given calcein to label new bone formation. Bone formation and bone neuropeptide concentrations were determined at 10 days. In one group, temporary neuronal blocking was achieved by perineural anesthesia of the brachial plexus with bupivicaine during loading. We found right ulna loading induces adaptive responses in other bones in both thoracic limbs compared with Sham controls and that neuronal blocking during loading abrogated bone formation in the loaded ulna and other thoracic limb bones. Skeletal adaptation was more evident in distal long bones compared with proximal long bones. We also found that the single period of loading modulated bone neuropeptide concentrations persistently for 10 days. We conclude that functional adaptation to loading of a single bone in young rapidly growing rats is neuronally regulated and involves multiple bones. Persistent changes in bone neuropeptide concentrations after a single loading period suggest that plasticity exists in the innervation of bone.
Shedding Light on Protein Folding, Structural and Functional Dynamics by Single Molecule Studies
Directory of Open Access Journals (Sweden)
Krutika Bavishi
2014-11-01
Full Text Available The advent of advanced single molecule measurements unveiled a great wealth of dynamic information revolutionizing our understanding of protein dynamics and behavior in ways unattainable by conventional bulk assays. Equipped with the ability to record distribution of behaviors rather than the mean property of a population, single molecule measurements offer observation and quantification of the abundance, lifetime and function of multiple protein states. They also permit the direct observation of the transient and rarely populated intermediates in the energy landscape that are typically averaged out in non-synchronized ensemble measurements. Single molecule studies have thus provided novel insights about how the dynamic sampling of the free energy landscape dictates all aspects of protein behavior; from its folding to function. Here we will survey some of the state of the art contributions in deciphering mechanisms that underlie protein folding, structural and functional dynamics by single molecule fluorescence microscopy techniques. We will discuss a few selected examples highlighting the power of the emerging techniques and finally discuss the future improvements and directions.
International Nuclear Information System (INIS)
Zhou, Jian; Li, Xi; Yang, Linlin; Yan, Songlin; Wang, Mengmeng; Cheng, Dan; Chen, Qi; Dong, Yulin; Liu, Peng; Cai, Weiquan; Zhang, Chaocan
2015-01-01
A novel electrochemical sensor based on Cu-MOF-199 [Cu-MOF-199 = Cu 3 (BTC) 2 (BTC = 1,3,5-benzenetricarboxylicacid)] and SWCNTs (single-walled carbon nanotubes) was fabricated for the simultaneous determination of hydroquinone (HQ) and catechol (CT). The modification procedure was carried out through casting SWCNTs on the bare glassy carbon electrode (GCE) and followed by the electrodeposition of Cu-MOF-199 on the SWCNTs modified electrode. Cyclic voltammetry (CV), electrochemical impedance spectroscopy (EIS) and scanning electron microscopy (SEM) were performed to characterize the electrochemical performance and surface characteristics of the as-prepared sensor. The composite electrode exhibited an excellent electrocatalytic activity with increased electrochemical signals towards the oxidation of HQ and CT, owing to the synergistic effect of SWCNTs and Cu-MOF-199. Under the optimized condition, the linear response range were from 0.1 to 1453 μmol L −1 (R HQ = 0.9999) for HQ and 0.1–1150 μmol L −1 (R CT = 0.9990) for CT. The detection limits for HQ and CT were as low as 0.08 and 0.1 μmol L −1 , respectively. Moreover, the modified electrode presented the good reproducibility and the excellent anti-interference performance. The analytical performance of the developed sensor for the simultaneous detection of HQ and CT had been evaluated in practical samples with satisfying results. - Highlights: • Cu-MOF-199/SWCNTs/GCE was facilely fabricated by the electrodeposition on SWCNTs/GCE. • An electrochemical sensor for detecting HQ and CT was constructed based on this modified electrode. • The proposed electrochemical sensor showed an extended linear range and lower detection limits. • The proposed electrochemical sensor had an excellent stability and reproducibility.
Smith, J. G., Jr.; Delozier, D. M.; Watson, K. A.; Connell, J. W.; Yu, Aiping; Haddon, R. C.; Bekyarova, E.
2006-01-01
As part of a continuing materials development activity, low color space environmentally stable polymeric materials that possess sufficient electrical conductivity for electrostatic charge dissipation (ESD) have been investigated. One method of incorporating sufficient electrical conductivity for ESD without detrimental effects on other polymer properties of interest (i.e., optical and thermo-optical) is through the incorporation of single-walled carbon nanotubes (SWNTs). However, SWNTs are difficult to fully disperse in the polymer matrix. One means of improving dispersion is by shortening and functionalizing SWNTs. While this improves dispersion, other properties (i.e., electrical) of the SWNTs can be affected which can in turn alter the final nanocomposite properties. Additionally, functionalization of the polymer matrix can also influence nanocomposite properties obtained from shortened, functionalized SWNTs. The preparation and characterization of nanocomposites fabricated from a polyimide, both functionalized and unfunctionalized, and shortened, functionalized SWNTs will be presented.
Hine, Nicholas D M; Dziedzic, Jacek; Haynes, Peter D; Skylaris, Chris-Kriton
2011-11-28
We present a comparison of methods for treating the electrostatic interactions of finite, isolated systems within periodic boundary conditions (PBCs), within density functional theory (DFT), with particular emphasis on linear-scaling (LS) DFT. Often, PBCs are not physically realistic but are an unavoidable consequence of the choice of basis set and the efficacy of using Fourier transforms to compute the Hartree potential. In such cases the effects of PBCs on the calculations need to be avoided, so that the results obtained represent the open rather than the periodic boundary. The very large systems encountered in LS-DFT make the demands of the supercell approximation for isolated systems more difficult to manage, and we show cases where the open boundary (infinite cell) result cannot be obtained from extrapolation of calculations from periodic cells of increasing size. We discuss, implement, and test three very different approaches for overcoming or circumventing the effects of PBCs: truncation of the Coulomb interaction combined with padding of the simulation cell, approaches based on the minimum image convention, and the explicit use of open boundary conditions (OBCs). We have implemented these approaches in the ONETEP LS-DFT program and applied them to a range of systems, including a polar nanorod and a protein. We compare their accuracy, complexity, and rate of convergence with simulation cell size. We demonstrate that corrective approaches within PBCs can achieve the OBC result more efficiently and accurately than pure OBC approaches.
Directory of Open Access Journals (Sweden)
Nicola Koper
2012-03-01
Full Text Available Resource selection functions (RSF are often developed using satellite (ARGOS or Global Positioning System (GPS telemetry datasets, which provide a large amount of highly correlated data. We discuss and compare the use of generalized linear mixed-effects models (GLMM and generalized estimating equations (GEE for using this type of data to develop RSFs. GLMMs directly model differences among caribou, while GEEs depend on an adjustment of the standard error to compensate for correlation of data points within individuals. Empirical standard errors, rather than model-based standard errors, must be used with either GLMMs or GEEs when developing RSFs. There are several important differences between these approaches; in particular, GLMMs are best for producing parameter estimates that predict how management might influence individuals, while GEEs are best for predicting how management might influence populations. As the interpretation, value, and statistical significance of both types of parameter estimates differ, it is important that users select the appropriate analytical method. We also outline the use of k-fold cross validation to assess fit of these models. Both GLMMs and GEEs hold promise for developing RSFs as long as they are used appropriately.
Abascal, Juan-Felipe P J; Arridge, Simon R; Bayford, Richard H; Holder, David S
2008-11-01
Electrical impedance tomography has the potential to provide a portable non-invasive method for imaging brain function. Clinical data collection has largely been undertaken with time difference data and linear image reconstruction methods. The purpose of this work was to determine the best method for selecting the regularization parameter of the inverse procedure, using the specific application of evoked brain activity in neonatal babies as an exemplar. The solution error norm and image SNR for the L-curve (LC), discrepancy principle (DP), generalized cross validation (GCV) and unbiased predictive risk estimator (UPRE) selection methods were evaluated in simulated data using an anatomically accurate finite element method (FEM) of the neonatal head and impedance changes due to blood flow in the visual cortex recorded in vivo. For simulated data, LC, GCV and UPRE were equally best. In human data in four neonatal infants, no significant differences were found among selection methods. We recommend that GCV or LC be employed for reconstruction of human neonatal images, as UPRE requires an empirical estimate of the noise variance.
Directory of Open Access Journals (Sweden)
J. ZGAJNAR
2008-12-01
Full Text Available The aim of this paper is to present the method and tool for optimisation of beef-fattening diets. Changes in policy environment and changes in costs of feed pose challenges for farm efficiency. We construct a spreadsheet from two modules based on mathematical deterministic programming techniques. In order to obtain an estimate of the magnitude of costs that may be incurred, the first module utilizes a linear program for least-cost ration formulation. The resulting value is then targeted as a cost goal in the second module. This is supported by weighted goal programming with a penalty function system. The approach presented here is an example of how a combination of mathematical programming techniques might be applied to prepare a user-friendly tool for optimal ration formulations. We report results that confirm this approach as useful, since one is able to formulate a least-cost ration without risking a decrease in the rations nutritive value or affecting the balance between nutrients.;
Directory of Open Access Journals (Sweden)
Guangtao Chen
2018-03-01
Full Text Available Functional electrical stimulation (FES is important in gait rehabilitation for patients with dropfoot. Since there are time-varying velocities during FES-assisted walking, it is difficult to achieve a good movement performance during walking. To account for the time-varying walking velocities, seven poststroke subjects were recruited and fuzzy logic control and a linear model were applied in FES-assisted walking to enable intensity- and duration-adaptive stimulation (IDAS for poststroke subjects with dropfoot. In this study, the performance of IDAS was evaluated using kinematic data, and was compared with the performance under no stimulation (NS, FES-assisted walking triggered by heel-off stimulation (HOS, and speed-adaptive stimulation. A larger maximum ankle dorsiflexion angle in the IDAS condition than those in other conditions was observed. The ankle plantar flexion angle in the IDAS condition was similar to that of normal walking. Improvement in the maximum ankle dorsiflexion and plantar flexion angles in the IDAS condition could be attributed to having the appropriate stimulation intensity and duration. In summary, the intensity- and duration-adaptive controller can attain better movement performance and may have great potential in future clinical applications.
Shedding light on protein folding, structural and functional dynamics by single molecule studies
DEFF Research Database (Denmark)
Bavishi, Krutika; Hatzakis, Nikos
2014-01-01
The advent of advanced single molecule measurements unveiled a great wealth of dynamic information revolutionizing our understanding of protein dynamics and behavior in ways unattainable by conventional bulk assays. Equipped with the ability to record distribution of behaviors rather than the mean...... property of a population, single molecule measurements offer observation and quantification of the abundance, lifetime and function of multiple protein states. They also permit the direct observation of the transient and rarely populated intermediates in the energy landscape that are typically averaged out...
Functionally generated amalgam stops for single complete denture: A case report
Directory of Open Access Journals (Sweden)
Pravinkumar G Patil
2009-01-01
Full Text Available Single complete denture opposing natural dentition is a common occurrence in clinical practice. This article reports a case of a single complete denture with a technique of occlusal refinement by func-tionally generated amalgam stops condensed in prepared resin teeth after initial balancing of the den-ture with semi-adjustable articulator. This technique provides intimacy of contact in all excursions by carving the amalgam in plastic stage. Amalgam stops improve the efficiency of the resin teeth. Den-tures fabricated using this technique require fewer and simpler post-insertion adjustments.
Effects of ageing on single muscle fibre contractile function following short-term immobilisation
DEFF Research Database (Denmark)
Hvid, Lars G; Ørtenblad, Niels; Aagaard, Per
2011-01-01
Very little attention has been given to the combined effect of healthy ageing and short-term disuse on the contractile function of human single muscle fibres. Therefore, the present study investigated the effects of 2 weeks of lower limb cast immobilisation (i.e. disuse) on selected contractile...... properties of single muscle fibres (n=378) from vastus lateralis of 9 young (24 ± 1 years) and 8 old (67 ± 2 years) healthy men with comparable levels of physical activity. Prior to immobilisation, MHC IIa fibres produced higher maximum Ca2+-activated force (approx. 32%) and specific force (approx. 33......%) and had lower Ca2+ sensitivity than MHC I fibres (p...
Sarsour, Khaled; Sheridan, Margaret; Jutte, Douglas; Nuru-Jeter, Amani; Hinshaw, Stephen; Boyce, W Thomas
2011-01-01
The association between family socioeconomic status (SES) and child executive functions is well-documented. However, few studies have examined the role of potential mediators and moderators. We studied the independent and interactive associations between family SES and single parenthood to predict child executive functions of inhibitory control, cognitive flexibility, and working memory and examined child expressive language abilities and family home environment as potential mediators of these associations. Sixty families from diverse SES backgrounds with a school-age target child (mean [SD] age = 9.9 [0.96] years) were evaluated. Child executive functioning was measured using a brief battery. The quality of the home environment was evaluated using the Home Observation for the Measurement of the Environment inventory. Family SES predicted the three child executive functions under study. Single parent and family SES were interactively associated with children's inhibitory control and cognitive flexibility; such that children from low SES families who were living with one parent performed less well on executive function tests than children from similarly low SES who were living with two parents. Parental responsivity, enrichment activities and family companionship mediated the association between family SES and child inhibitory control and working memory. This study demonstrates that family SES inequalities are associated with inequalities in home environments and with inequalities in child executive functions. The impact of these disparities as they unfold in the lives of typically developing children merits further investigation and understanding.
International Nuclear Information System (INIS)
Heilmaier, Christina; Nassenstein, Kai; Nielles-Vallespin, Sonia; Zuehlsdorff, Sven; Hunold, Peter; Barkhausen, Joerg
2010-01-01
Purpose: To prospectively assess the performance of highly accelerated cine MRI in multi-orientations combined with a new guide-point modeling post-processing technique (GPM approach) for assessment of left ventricular (LV) function compared to the standard summation of slices method based on a stack of short axis views (SoS approach). Materials and methods: 33 consecutive patients were examined on a 1.5 T scanner with a standard steady state free precession (SSFP) sequence (TR, 3.0 ms; TE, 1.5 m; flip angle (FA), 60 o ; acceleration factor (AF), 2) analyzed with the SoS method and a highly accelerated, single breath-hold temporal parallel acquisition SSFP sequence (TR, 4.6 ms; TE, 1.1 ms; AF, 3) post-processed with the GPM method. LV function values were measured by two independent readers with different experience in cardiac MRI and compared by using the paired t-test and F-test. Inter- and intraobserver agreements were calculated using Bland-Altman-Plots. Results: Mean acquisition and post-processing time was significantly shorter with the GPM approach (15 s/3 min versus 360 s/6 min). For all LV function parameters interobserver agreement between the experienced and non-experienced reader was significantly improved when the GPM approach was used. However, end-diastolic and end-systolic volumes were larger for the GPM technique when compared to the SoS method (P 0.121). In both readers and for all parameters variances did not differ significantly (P ≥ 0.409) and the two approaches showed an excellent linear correlation (r > 0.951). Conclusion: Due to its accurate, fast and reproducible assessment of LV function parameters highly accelerated MRI combined with the GPM technique may become the technique of first choice for assessment of LV function in clinical routine.
Um, Ji-Yong; Kim, Yoon-Jee; Cho, Seong-Eun; Chae, Min-Kyun; Kim, Byungsub; Sim, Jae-Yoon; Park, Hong-June
2015-02-01
A single-chip 32-channel analog beamformer is proposed. It achieves a delay resolution of 4 ns and a maximum delay range of 768 ns. It has a focal-point based architecture, which consists of 7 sub-analog beamformers (sub-ABF). Each sub-ABF performs a RX focusing operation for a single focal point. Seven sub-ABFs perform a time-interleaving operation to achieve the maximum delay range of 768 ns. Phase interpolators are used in sub-ABFs to generate sampling clocks with the delay resolution of 4 ns from a low frequency system clock of 5 MHz. Each sub-ABF samples 32 echo signals at different times into sampling capacitors, which work as analog memory cells. The sampled 32 echo signals of each sub-ABF are originated from one target focal point at one instance. They are summed at one instance in a sub-ABF to perform the RX focusing for the target focal point. The proposed ABF chip has been fabricated in a 0.13- μ m CMOS process with an active area of 16 mm (2). The total power consumption is 287 mW. In measurement, the digital echo signals from a commercial ultrasound medical imaging machine were applied to the fabricated chip through commercial DAC chips. Due to the speed limitation of the DAC chips, the delay resolution was relaxed to 10 ns for the real-time measurement. A linear array transducer with no steering operation is used in this work.
Effects of ageing on single muscle fibre contractile function following short-term immobilisation
DEFF Research Database (Denmark)
Hvid, Lars G; Ortenblad, Niels; Aagaard, Per
2011-01-01
Very little attention has been given to the combined effects of healthy ageing and short-term disuse on the contractile function of human single muscle fibres. Therefore, the present study investigated the effects of 2 weeks of lower limb cast immobilisation (i.e. disuse) on selected contractile.......05), respectively. In conclusion, 2 weeks of lower limb immobilisation caused greater impairments in single muscle fibre force and specific force in MHC IIa than MHC I fibres independently of age. In contrast, immobilisation-induced changes in Ca(2+) sensitivity that were dependent on age and MHC isoform....... properties of single muscle fibres (n = 378) from vastus lateralis of nine young (24 ± 1 years) and eight old (67 ± 2 years) healthy men with comparable levels of physical activity. Prior to immobilisation, MHC IIa fibres produced higher maximum Ca(2+)-activated force (approx. 32%) and specific force (approx...
The consistency condition for the three-point function in dissipative single-clock inflation
International Nuclear Information System (INIS)
Nacir, Diana López; Porto, Rafael A.; Zaldarriaga, Matias
2012-01-01
We generalize the consistency condition for the three-point function in single field inflation to the case of dissipative, multi-field, single-clock models. We use the recently introduced extension of the effective field theory of inflation that accounts for dissipative effects, to provide an explicit proof to leading (non-trivial) order in the generalized slow roll parameters and mixing with gravity scales. Our results illustrate the conditions necessary for the validity of the consistency relation in situations with many degrees of freedom relevant during inflation, namely that there is a preferred clock. Departures from this condition in forthcoming experiments would rule out not only single field but also a large class of multi-field models
The consistency condition for the three-point function in dissipative single-clock inflation
Energy Technology Data Exchange (ETDEWEB)
Nacir, Diana López [Departamento de Física, Facultad de Ciencias Exactas y Naturales, UBA and IFIBA, CONICET, Ciudad Universitaria, Pabellón 1, 1428, Buenos Aires (Argentina); Porto, Rafael A.; Zaldarriaga, Matias, E-mail: dnacir@df.uba.ar, E-mail: rporto@ias.edu, E-mail: matiasz@ias.edu [School of Natural Sciences, Institute for Advanced Study, Einstein Drive, Princeton, NJ 08540 (United States)
2012-09-01
We generalize the consistency condition for the three-point function in single field inflation to the case of dissipative, multi-field, single-clock models. We use the recently introduced extension of the effective field theory of inflation that accounts for dissipative effects, to provide an explicit proof to leading (non-trivial) order in the generalized slow roll parameters and mixing with gravity scales. Our results illustrate the conditions necessary for the validity of the consistency relation in situations with many degrees of freedom relevant during inflation, namely that there is a preferred clock. Departures from this condition in forthcoming experiments would rule out not only single field but also a large class of multi-field models.
Bezuska, Laurynas; Lebetkevicius, Virgilijus; Lankutis, Kestutis; Sudikiene, Rita; Sirvydis, Vytautas Jonas; Tarutis, Virgilijus
2015-12-01
Most single ventricle patients undergo Fontan procedure earlier in current era. However, optimal timing of Fontan completion after an intermediate staging surgery is controversial. We present children who had Fontan surgeries younger than 3 years of age comparing the data with older patients. Between 2000 and 2013, 45 patients with functional single ventricle underwent extracardiac total cavopulmonary connection (TCPC) using GORE-TEX(®) conduit at a single institution. Children were divided into group A (age GORE-TEX(®) conduit size were similar in both groups. The time of chest drain stay was significantly lower in group A (median 12 days, IQR 7-22) than in group B (22 days, IQR 16-32.5) (p = 0.014). Extracardiac TCPC can be performed earlier with good intermediate results. Earlier Fontan procedure might be advantageous for reducing chest drains stay.
Peramaiyan, G.; Pandi, P.; Bhagavannarayana, G.; Mohan Kumar, R.
2012-12-01
L-Arginine phosphate (LAP) and methylene blue dye admixtured L-arginine phosphate single crystals were grown by slow cooling technique and their cell parameters, crystalline perfection, dopant inclusion were confirmed by single crystal, powder X-ray diffraction and high resolution X-ray diffraction analyses respectively. The modes of vibrations of different functional groups present in pure and dye admixtured LAP crystals have been identified by FTIR spectral analysis. The UV-Vis-NIR spectral study was performed on the grown crystals and found that the crystals are transparent in the entire visible-NIR region. The dielectric measurement was carried out on the grown crystals as a function of frequency at room temperature. The microhardness hardness study on (1 0 0) plane of grown crystals reveals the mechanical behavior of the crystals. The laser damage threshold value significantly enhanced for dye admixtured crystal in comparison with pure LAP crystal. The relative SHG efficiency of methylane blue admixtured LAP crystal was found to be 1.3 times higher than that of pure LAP crystal.
Effect of single physical load of different duration and intensity on cognitive function.
Sipavičienė, Saulė; Dumčienė, Audronė; Ramanauskienė, Irina; Skurvydas, Albertas
2012-01-01
The aim of this study was to determine the effect of a single physical load of different duration and intensity on cognitive function. The study population comprised 90 male soldiers. The subjects were randomly divided into two groups: experimental (n=60) and control group (n=30). The soldiers in the experimental group undertook 3 specific loads of different types, durations, and intensities. Attention concentration and tapping tests were carried out, and the reaction time was measured. After the physical load, the soldiers in the experimental group performed the attention concentration test faster, the number of committed mistakes decreased, and the rate of processing information increased as compared to the corresponding values before physical load (all Preaction time, in the experimental group were found to be worse than before physical loads (P<0.05). No significant changes were observed in the control group of soldiers. Despite fatigue, a single physical load of different duration and intensity improved the cognitive function.
Functional magnetic resonance microscopy at single-cell resolution in Aplysia californica
Radecki, Guillaume; Nargeot, Romuald; Jelescu, Ileana Ozana; Le Bihan, Denis; Ciobanu, Luisa
2014-01-01
In this work, we show the feasibility of performing functional MRI studies with single-cell resolution. At ultrahigh magnetic field, manganese-enhanced magnetic resonance microscopy allows the identification of most motor neurons in the buccal network of Aplysia at low, nontoxic Mn2+ concentrations. We establish that Mn2+ accumulates intracellularly on injection into the living Aplysia and that its concentration increases when the animals are presented with a sensory stimulus. We also show that we can distinguish between neuronal activities elicited by different types of stimuli. This method opens up a new avenue into probing the functional organization and plasticity of neuronal networks involved in goal-directed behaviors with single-cell resolution. PMID:24872449
Functional and magnetic resonance imaging evaluation after single-tendon rotator cuff reconstruction
DEFF Research Database (Denmark)
Knudsen, H B; Gelineck, J; Søjbjerg, Jens Ole
1999-01-01
The aim of this study was to investigate tendon integrity after surgical repair of single-tendon rotator cuff lesions. In 31 patients, 31 single-tendon repairs were evaluated. Thirty-one patients were available for clinical assessment and magnetic resonance imaging (MRI) at follow-up. A standard...... series of MR images was obtained for each. The results of functional assessment were scored according to the system of Constant. According to MRI evaluation, 21 (68%) patients had an intact or thinned rotator cuff and 10 (32%) had recurrence of a full-thickness cuff defect at follow-up. Patients...... with an intact or thinned rotator cuff had a median Constant score of 75.5 points; patients with a full-thickness cuff defect had a median score of 62 points. There was no correlation between tendon integrity on postoperative MR images and functional outcome. Patients with intact or thinned cuffs did not have...
Sénégond, Nicolas; Boulmé, Audren; Plag, Camille; Teston, Franck; Certon, Dominique
2013-07-01
We report a fast time-domain model of fluid-coupled cMUTs developed to predict the transient response-i.e., the impulse pressure response--of an element of a linear 1-D array. Mechanical equations of the cMUT diaphragm are solved with 2-D finite-difference schemes. The time-domain solving method is a fourth--order Runge-Kutta algorithm. The model takes into account the electrostatic nonlinearity and the contact with the bottom electrode when the membrane is collapsed. Mutual acoustic coupling between cells is introduced through the numerical implementation of analytical solutions of the impulse diffraction theory established in the case of acoustic sources with rectangular geometry. Processing times are very short: they vary from a few minutes for a single cell to a maximum of 30 min for one element of an array. After a description of the model, the impact of the nonlinearity and the pull-in/pull-out phenomena on the dynamic behavior of the cMUT diaphragm is discussed. Experimental results of mechanical displacements obtained by interferometric measurements and the acoustic pressure field are compared with simulations. Different excitation signals-high-frequency bandwidth pulses and toneburst excitations of varying central frequency-were chosen to compare theory with experimental results.
Energy Technology Data Exchange (ETDEWEB)
Hahn, C., E-mail: christoph.hahn@uni-jena.de; Höfer, S.; Kämpfer, T. [Helmholtz Institute Jena, 07743 Jena (Germany); Institute of Optics and Quantum Electronics, University of Jena, 07743 Jena (Germany); Weber, G.; Märtin, R. [Helmholtz Institute Jena, 07743 Jena (Germany); GSI Helmholtzzentrum für Schwerionenforschung GmbH, 64291 Darmstadt (Germany); Stöhlker, Th. [Helmholtz Institute Jena, 07743 Jena (Germany); Institute of Optics and Quantum Electronics, University of Jena, 07743 Jena (Germany); GSI Helmholtzzentrum für Schwerionenforschung GmbH, 64291 Darmstadt (Germany)
2016-04-15
Single-photon spectroscopy of pulsed, high-intensity sources of hard X-rays — such as laser-generated plasmas — is often hampered by the pileup of several photons absorbed by the unsegmented, large-volume sensors routinely used for the detection of high-energy radiation. Detectors based on the Timepix chip, with a segmentation pitch of 55 μm and the possibility to be equipped with high-Z sensor chips, constitute an attractive alternative to commonly used passive solutions such as image plates. In this report, we present energy calibration and characterization measurements of such devices. The achievable energy resolution is comparable to that of scintillators for γ spectroscopy. Moreover, we also introduce a simple two-detector Compton polarimeter setup with a polarimeter quality of (98 ± 1)%. Finally, a proof-of-principle polarimetry experiment is discussed, where we studied the linear polarization of bremsstrahlung emitted by a laser-driven plasma and found an indication of the X-ray polarization direction depending on the polarization state of the incident laser pulse.
Hahn, C; Weber, G; Märtin, R; Höfer, S; Kämpfer, T; Stöhlker, Th
2016-04-01
Single-photon spectroscopy of pulsed, high-intensity sources of hard X-rays - such as laser-generated plasmas - is often hampered by the pileup of several photons absorbed by the unsegmented, large-volume sensors routinely used for the detection of high-energy radiation. Detectors based on the Timepix chip, with a segmentation pitch of 55 μm and the possibility to be equipped with high-Z sensor chips, constitute an attractive alternative to commonly used passive solutions such as image plates. In this report, we present energy calibration and characterization measurements of such devices. The achievable energy resolution is comparable to that of scintillators for γ spectroscopy. Moreover, we also introduce a simple two-detector Compton polarimeter setup with a polarimeter quality of (98 ± 1)%. Finally, a proof-of-principle polarimetry experiment is discussed, where we studied the linear polarization of bremsstrahlung emitted by a laser-driven plasma and found an indication of the X-ray polarization direction depending on the polarization state of the incident laser pulse.
Kong, Na; Shimpi, Manishkumar R; Ramström, Olof; Yan, Mingdi
2015-03-20
Carbohydrate-functionalized single-walled carbon nanotubes (SWNTs) were synthesized using microwave-assisted reaction of perfluorophenyl azide with the nanotubes. The results showed that microwave radiation provides a rapid and effective means to covalently attach carbohydrates to SWNTs, producing carbohydrate-SWNT conjugates for biorecognition. The carbohydrate-functionalized SWNTs were furthermore shown to interact specifically with cognate carbohydrate-specific proteins (lectins), resulting in predicted recognition patterns. The carbohydrate-presenting SWNTs constitute a new platform for sensitive protein- or cell recognition, which pave the way for glycoconjugated carbon nanomaterials in biorecognition applications. Copyright © 2014 Elsevier Ltd. All rights reserved.
Comparison of functional results of two fixation systems using single-row suturing of rotator cuff.
Muniesa-Herrero, M P; Torres-Campos, A; Urgel-Granados, A; Blanco-Llorca, J A; Floría-Arnal, L J; Roncal-Boj, J C; Castro-Sauras, A
2018-03-21
Arthroscopic repair of rotator cuff disorders is a technically demanding but successful procedure. Many anchor and suture alternatives are now available. The choice of the implant by the surgeon is less important than the configuration of the suture used to fix the tendon, however it is necessary to know if there are differences in the results, using each one of them. The aim of the study is to evaluate if there are differences between the knotted and non-knotted implant in terms of functional and satisfaction results. A retrospective study was carried out on 83 patients operated between 2010 and 2014 in our center using 2anchoring systems with and without knotting (39 versus 44 patients respectively), with single row in complete rupture of the rotator cuff. At the end of the follow-up, an average score was obtained on the Constant scale of 74.6 points. 98% of the patients considered the result of the surgery satisfactory. Statistically, there were no significant differences between the 2groups in terms of functionality, satisfaction or reincorporation to activities. The functional results of the single-row cuff suture are satisfactory, although biomechanical studies show advantages in favor of sutures that reproduce a transoseo system. It our series of patients the presence of knotting does not show per se a significant functional difference being both superimposable techniques in absolute values of functionality and patient satisfaction. Copyright © 2018 SECOT. Publicado por Elsevier España, S.L.U. All rights reserved.
Bidirectional reflectance spectroscopy 7. The single particle phase function hockey stick relation
Hapke, Bruce
2012-11-01
The measured volume-average single particle angular scattering functions of a large number of types of particle of interest for planetary regoliths in the visible-near-IR wavelength region can be represented to a reasonable approximation by two-parameter, double Henyey-Greenstein functions. When the two parameters of this function are plotted against one another they are found to be inversely correlated and lie within a restricted zone shaped like a hockey stick within the parameter space. The centroid of the zone is a curve that can be represented by a simple empirical equation. The wide variety of types of particles used to construct the plot implies that this equation may represent most of the particles found in regoliths. This means that when modeling the bidirectional reflectance of a regolith it may be possible to reduce the number of parameters necessary to specify the reflectance, and also to characterize the entire single particle phase function from observations at phase angles less than 90°. Even if the hockey stick relation has a finite width, rather than being a line, it restricts the parameter space that must be searched when fitting data. The curve should also be useful for forward modeling particle phase functions.
Energy Technology Data Exchange (ETDEWEB)
Bhandari, Rohit; Gupta, Prachi; Dziubla, Thomas; Hilt, J. Zach, E-mail: zach.hilt@uky.edu
2016-10-01
Magnetic iron oxide nanoparticles have been well known for their applications in magnetic resonance imaging (MRI), hyperthermia, targeted drug delivery, etc. The surface modification of these magnetic nanoparticles has been explored extensively to achieve functionalized materials with potential application in biomedical, environmental and catalysis field. Herein, we report a novel and versatile single step methodology for developing curcumin functionalized magnetic Fe{sub 3}O{sub 4} nanoparticles without any additional linkers, using a simple coprecipitation technique. The magnetic nanoparticles (MNPs) were characterized using transmission electron microscopy, X-ray diffraction, fourier transform infrared spectroscopy and thermogravimetric analysis. The developed MNPs were employed in a cellular application for protection against an inflammatory agent, a polychlorinated biphenyl (PCB) molecule. - Graphical abstract: Novel single step curcumin coated magnetic Fe{sub 3}O{sub 4} nanoparticles without any additional linkers for medical, environmental, and other applications. Display Omitted - Highlights: • A novel and versatile single step methodology for developing curcumin functionalized magnetic Fe{sub 3}O{sub 4} nanoparticles is reported. • The magnetic nanoparticles (MNPs) were characterized using TEM, XRD, FTIR and TGA. • The developed MNPs were employed in a cellular application for protection against an inflammatory agent, a polychlorinated biphenyl (PCB).
Computing single step operators of logic programming in radial basis function neural networks
Energy Technology Data Exchange (ETDEWEB)
Hamadneh, Nawaf; Sathasivam, Saratha; Choon, Ong Hong [School of Mathematical Sciences, Universiti Sains Malaysia, 11800 USM, Penang (Malaysia)
2014-07-10
Logic programming is the process that leads from an original formulation of a computing problem to executable programs. A normal logic program consists of a finite set of clauses. A valuation I of logic programming is a mapping from ground atoms to false or true. The single step operator of any logic programming is defined as a function (T{sub p}:I→I). Logic programming is well-suited to building the artificial intelligence systems. In this study, we established a new technique to compute the single step operators of logic programming in the radial basis function neural networks. To do that, we proposed a new technique to generate the training data sets of single step operators. The training data sets are used to build the neural networks. We used the recurrent radial basis function neural networks to get to the steady state (the fixed point of the operators). To improve the performance of the neural networks, we used the particle swarm optimization algorithm to train the networks.
Computing single step operators of logic programming in radial basis function neural networks
Hamadneh, Nawaf; Sathasivam, Saratha; Choon, Ong Hong
2014-07-01
Logic programming is the process that leads from an original formulation of a computing problem to executable programs. A normal logic program consists of a finite set of clauses. A valuation I of logic programming is a mapping from ground atoms to false or true. The single step operator of any logic programming is defined as a function (Tp:I→I). Logic programming is well-suited to building the artificial intelligence systems. In this study, we established a new technique to compute the single step operators of logic programming in the radial basis function neural networks. To do that, we proposed a new technique to generate the training data sets of single step operators. The training data sets are used to build the neural networks. We used the recurrent radial basis function neural networks to get to the steady state (the fixed point of the operators). To improve the performance of the neural networks, we used the particle swarm optimization algorithm to train the networks.
Computing single step operators of logic programming in radial basis function neural networks
International Nuclear Information System (INIS)
Hamadneh, Nawaf; Sathasivam, Saratha; Choon, Ong Hong
2014-01-01
Logic programming is the process that leads from an original formulation of a computing problem to executable programs. A normal logic program consists of a finite set of clauses. A valuation I of logic programming is a mapping from ground atoms to false or true. The single step operator of any logic programming is defined as a function (T p :I→I). Logic programming is well-suited to building the artificial intelligence systems. In this study, we established a new technique to compute the single step operators of logic programming in the radial basis function neural networks. To do that, we proposed a new technique to generate the training data sets of single step operators. The training data sets are used to build the neural networks. We used the recurrent radial basis function neural networks to get to the steady state (the fixed point of the operators). To improve the performance of the neural networks, we used the particle swarm optimization algorithm to train the networks
Linear Algebra and Linear Models
Indian Academy of Sciences (India)
Linear Algebra and Linear. Models. Kalyan Das. Linear Algebra and linear Models. (2nd Edn) by R P Bapat. Hindustan Book Agency, 1999 pp.xiii+180, Price: Rs.135/-. This monograph provides an introduction to the basic aspects of the theory oflinear estima- tion and that of testing linear hypotheses. The primary objective ...
Vukićević, R.; Vukovic, I.; Stoyanov, H.; Korwitz, A.; Pospiech, D.; Kofod, G.; Loos, K.; Brinke, G. ten; Beuermann, S.
2012-01-01
The surface of single-walled carbon nanotubes (SWCNTs) was functionalized with azide-terminated poly(vinylidene fluoride) (PVDF). Functionalization was confirmed by dispersibility, Raman spectroscopy, and thermogravimetric analyses. Raman spectra show disordering of the SWCNTs, thus, strongly
Directory of Open Access Journals (Sweden)
Wang Yiguo
2008-10-01
Full Text Available Abstract Background Many well-represented domains recognize primary sequences usually less than 10 amino acids in length, called Short Linear Motifs (SLiMs. Accurate prediction of SLiMs has been difficult because they are short (often Results Our combined approach revealed that SLiMs are highly conserved in proteins from functional classes that are known to interact with a specific domain, but that they are not conserved in most other protein groups. We found that SLiMs recognized by SH2 domains were highly conserved in receptor kinases/phosphatases, adaptor molecules, and tyrosine kinases/phosphatases, that SLiMs recognized by SH3 domains were highly conserved in cytoskeletal and cytoskeletal-associated proteins, that SLiMs recognized by PDZ domains were highly conserved in membrane proteins such as channels and receptors, and that SLiMs recognized by S/T kinase domains were highly conserved in adaptor molecules, S/T kinases/phosphatases, and proteins involved in transcription or cell cycle control. We studied Tyr-SLiMs recognized by SH2 domains in more detail, and found that SH2-recognized Tyr-SLiMs on the cytoplasmic side of membrane proteins are more highly conserved than those on the extra-cellular side. Also, we found that SH2-recognized Tyr-SLiMs that are associated with SH3 motifs and a tyrosine kinase phosphorylation motif are more highly conserved. Conclusion The interactome of protein domains is reflected by the evolutionary conservation of SLiMs recognized by these domains. Combining scoring matrixes derived from peptide libraries and conservation analysis, we would be able to find those protein groups that are more likely to interact with specific domains.
Wang, Jun; Ma, Kui; Yin, Huanshun; Zhou, Yunlei; Ai, Shiyun
2017-12-20
An aptamer based method is described for the electrochemical determination of ampicillin. It is based on the use of DNA aptamer, DNA functionalized gold nanoparticles (DNA-AuNPs), and single-stranded DNA binding protein (ssDNA-BP). When the aptamer hybridizes with the target DNA on the AuNPs, the ssDNA-BP is captured on the electrode surface via its specific interaction with ss-DNA. This results in a decreased electrochemical signal of the redox probe Fe(CN) 6 3- which is measured best at a voltage of 0.188 mV (vs. reference electrode). In the presence of ampicillin, the formation of aptamer-ampicillin conjugate blocks the further immobilization of DNA-AuNPs and ssDNA-BP, and this leads to an increased response. The method has a linear reposne that convers the 1 pM to 5 nM ampicillin concentration range, with a 0.38 pM detection limit (at an S/N ratio of 3). The assay is selective, stable and reproducible. It was applied to the determination of ampicillin in spiked milk samples where it gave recoveries ranging from 95.5 to 105.5%. Graphical abstract Schematic of a simple and sensitive electrochemical apta-biosensor for ampicillin detection. It is based on the use of gold nanoparticles (AuNPs), DNA aptamer, DNA functionalized AuNPs (DNA-AuNPs), and single-strand DNA binding protein (SSBP).
International Nuclear Information System (INIS)
Yamano, Tetsuhiro; Sakamoto, Kenzo; Hikosaka, Takato; Zen, Kan; Nakamura, Takeshi; Sawada, Takahisa; Azuma, Akihiro; Nakagawa, Masao; Nakamura, Tomoki; Nishimura, Tsunehiko
2003-01-01
Gated single-photon emission tomography (SPET) is not yet an established procedure for the evaluation of left ventricular (LV) diastolic function. This study examined diastolic function derived from gated SPET in comparison with an established diagnostic tool, Doppler echocardiography. We examined 37 consecutive patients with normal sinus rhythm who underwent gated technetium-99m tetrofosmin SPET. A gated SPET program was used with a temporal resolution of 32 frames per R-R interval. We obtained the Doppler transmitral flow velocity waveform immediately before gated SPET image acquisition. Patients who showed a ratio of peak early transmitral flow velocity to atrial flow velocity (E/A) of >1 or whose R-R intervals differed by >5% between Doppler echocardiography and gated SPET were excluded from this investigation. We compared diastolic indices and presumed corresponding intervals in diastole using the two methods. The peak filling rate (PFR) derived from gated SPET correlated with the Doppler peak velocity of the early transmitral flow (E) wave (r=0.65) and deceleration of the E wave (r=0.71). The time to PFR and percent atrial contribution to LV filling from gated SPET correlated excellently with the Doppler LV isovolumic relaxation time (r=0.93) and the E/A ratio (r=-0.85), respectively. There was a significant linear correlation in all the intervals from the R wave to the presumed corresponding diastolic points. The point of PFR in gated SPET and the peak of the E wave in Doppler echocardiography generally coincided. The onset of filling in gated SPET tended to be closer to the second heart sound than the start of the E wave in Doppler echocardiography. We conclude that gated SPET permits the assessment of not only myocardial perfusion and LV systolic function but also diastolic function, although there may be some errors in detection of the precise beginning of LV filling. (orig.)
Directory of Open Access Journals (Sweden)
Mazzuco A
2015-08-01
capacity/total lung capacity ratio, and residual volume/total lung capacity ratio. Significant and moderate associations were also observed between LF/HF ratio versus total gas volume (%, r=0.53; LF/HF ratio versus residual volume, %, r=0.52; and HF versus total gas volume (%, r=-0.53 (P<0.05. Linear regression analysis revealed that ΔRRi supine-M-RSA was independently related to DLCO (r=-0.77, r2=0.43, P<0.05. Conclusion: Responses of HRV indices were more prominent during M-RSA in moderate to severe COPD. Moreover, greater lung function impairment was related to poorer heart rate dynamics. Finally, impaired lung diffusion capacity was related to an altered parasympathetic response in these patients. Keywords: lung diffusion capacity, static lung volumes, rest hyperinflation, COPD, heart rate variability, cardiac autonomic nervous system
Xu, Qizhi
This thesis introduces a new strategy to fabricate single molecular transistor by utilizing the covalent chemistry to reconnect the molecule with the electroburnt graphene nanogap. We studied the effect of coupling chemistry and molecular length on the efficiency of reconnection between the molecule and the graphene. With this technique, we are also able to observe the Coulomb Blockade phenomenon, which is a characteristics of single-electron transistors. The high yield and versatility of this approach augur well for creating a new generation of sensors, switches, and other functional devices using graphene contacts. This thesis also introduces a new type of organic single-crystal p-n heterojunction inspired from the ball-and-socket shape-complementarity between fullerene and contorted dibenzotetrathienocoronene (c-DBTTC). We studied the influence of temperature, pressure, and time on the self-assembly process of contorted dibenzotetrathienocoronene on the as-grown fullerene crystals. We also utilized fluorescence microscopy to investigate the charge transfer in this type of p-n heterojunction. Finally, this thesis introduces one-dimensional and two-dimensional programming in solid-state materials from superatom macrocycles. We find that the linkers that bridges the two superatoms determine the distance and electronic coupling between the two superatoms in the macrocycle, which in turn determines the way they self-assembled in the solid-state materials. The thesis is composed of four chapters. The first chapter introduces why we are in terested in molecular transistors and new functional materials, and what has been done so far. The second chapter described the approach we developed to assemble single molecule into circuits with graphene electrodes. The third chapter details the method to fabricate the organic single-crystal C60-DBTTC p-n heterojunction, which is of great importance to understand their charge transfer process. The last chapter introduced a new
Linear thermal expansivity and Cp measurements for LuHx and LuDx (x=0.005 and 0.053) single crystals
International Nuclear Information System (INIS)
Swenson, C.A.
1996-01-01
Linear thermal expansivity (α) measurements from 1 to 300 K and heat capacity (C p ) measurements from 1 to 110 K are reported for single crystals of the α-Lu hexagonal alloys LuH x and LuD x (x=0.005 and 0.053). The C p data confirm and extend to 110 K earlier 1 to 20 K measurements on LuH x alloys, and show that isotope effects, if any, are small. The small x dependences of the C p close-quote s above 8 K can be associated with small increases in the Debye temperature Θ 0 . This latter interpretation, which is consistent with ultrasonic and other results for these alloys, is valid only if C p is expressed as mJ/gmolK (essentially, per mole of Lu ions). Results are in agreement with the previous conclusion from more extensive polycrystalline LuH x data that the shape of the low-temperature C p vs T relation for x≤0.015 is qualitatively different from that for x≥0.032. The linear thermal expansivities of the c-axis alloys, even for x=0.005, are significantly smaller (by from 3% to 20%) than those for the pure crystals, with large isotope effects and a large, nonlinear x dependence for the low-temperature expansivity data. Other types of data have shown a feature near 170 K which is associated with the completion of pairing of the hydrogens along the c axis in next-nearest-neighbor tetrahedral sites. A distinct (approximately 15 K wide) change in α which is observed near this temperature for each alloy, except for a-axis LuD 0.005 , provides the most direct evidence of such a transition. The temperature of the c-axis discontinuity is slightly isotope and x dependent, and scales approximately with x [+24% on warming for LuH(or D) 0.053 ]. (Abstract Truncated)
Directory of Open Access Journals (Sweden)
Wolf Martin
2011-06-01
Full Text Available Abstract Background For brain computer interfaces (BCIs, which may be valuable in neurorehabilitation, brain signals derived from mental activation can be monitored by non-invasive methods, such as functional near-infrared spectroscopy (fNIRS. Single-trial classification is important for this purpose and this was the aim of the presented study. In particular, we aimed to investigate a combined approach: 1 offline single-trial classification of brain signals derived from a novel wireless fNIRS instrument; 2 to use motor imagery (MI as mental task thereby discriminating between MI signals in response to different tasks complexities, i.e. simple and complex MI tasks. Methods 12 subjects were asked to imagine either a simple finger-tapping task using their right thumb or a complex sequential finger-tapping task using all fingers of their right hand. fNIRS was recorded over secondary motor areas of the contralateral hemisphere. Using Fisher's linear discriminant analysis (FLDA and cross validation, we selected for each subject a best-performing feature combination consisting of 1 one out of three channel, 2 an analysis time interval ranging from 5-15 s after stimulation onset and 3 up to four Δ[O2Hb] signal features (Δ[O2Hb] mean signal amplitudes, variance, skewness and kurtosis. Results The results of our single-trial classification showed that using the simple combination set of channels, time intervals and up to four Δ[O2Hb] signal features comprising Δ[O2Hb] mean signal amplitudes, variance, skewness and kurtosis, it was possible to discriminate single-trials of MI tasks differing in complexity, i.e. simple versus complex tasks (inter-task paired t-test p ≤ 0.001, over secondary motor areas with an average classification accuracy of 81%. Conclusions Although the classification accuracies look promising they are nevertheless subject of considerable subject-to-subject variability. In the discussion we address each of these aspects, their
Investigation of snow single scattering properties based on first order Legendre phase function
Eppanapelli, Lavan Kumar; Casselgren, Johan; Wåhlin, Johan; Sjödahl, Mikael
2017-04-01
Angularly resolved bidirectional reflectance measurements were modelled by approximating a first order Legendre expanded phase function to retrieve single scattering properties of snow. The measurements from 10 different snow types with known density and specific surface area (SSA) were investigated. A near infrared (NIR) spectrometer was used to measure reflected light above the snow surface over the hemisphere in the wavelength region of 900-1650 nm. A solver based on discrete ordinate radiative transfer (DISORT) model was used to retrieve the estimated Legendre coefficients of the phase function and a correlation between the coefficients and physical properties of different snow types is investigated. Results of this study suggest that the first two coefficients of the first order Legendre phase function provide sufficient information about the physical properties of snow where the latter captures the anisotropic behaviour of snow and the former provides a relative estimate of the single scattering albedo of snow. The coefficients of the first order phase function were compared with the experimental data and observed that both the coefficients are in good agreement with the experimental data. These findings suggest that our approach can be applied as a qualitative tool to investigate physical properties of snow and also to classify different snow types.
Energy Technology Data Exchange (ETDEWEB)
Liu, Fukai; Lu, Jian; Garuba, Oluwayemi A.; Leung, Lai-Yung; Luo, Yiyong; Wan, Xiuquan
2018-05-01
This paper explores the use of linear response function (LRF) to relate the mean sea surface temperature (SST) response to prescribed ocean heat convergence (q-flux) forcings. Two methods for constructing the LRF based on the fluctuation-dissipation theorem (FDT) and Green’s function (GRF) are examined. A 900-year preindustrial simulation from the Community Earth System Model with a slab ocean (CESM-SOM) is used to estimate the LRF using FDT. For GRF, 106 pairs of CESM-SOM simulations with warm and cold q-flux patches are performed. FDT is found to have skill in estimating the SST response to a q-flux forcing when the local SST response is strong, but it fails in inverse estimation of the q-flux forcing for a given SST pattern. In contrast, GRF is shown to be reasonably accurate in estimating both SST response and q-flux forcing. Possible degradation in FDT may be attributed to insufficient data sampling, significant departures of the SST data from Gaussian, and the non-normality of the constructed operator. The accurately estimated GRF-based LRF is used to (i) generate a global surface temperature sensitivity map that shows the q-flux forcing in higher latitudes to be three to four times more effective than in low latitudes in producing global surface warming; (ii) identify the most excitable SST mode (neutral vector) resembling Interdecadal Pacific Oscillation; and (iii) estimate a time-invariant q-flux forcing needed for maintaining the GHG-induced SST warming pattern. The GRF experiments will be used to construct LRF for other variables to further explore climate sensitivities and feedbacks.
Single trap in liquid gated nanowire FETs: Capture time behavior as a function of current
Gasparyan, F.; Zadorozhnyi, I.; Vitusevich, S.
2015-05-01
The basic reason for enhanced electron capture time, τ c , of the oxide single trap dependence on drain current in the linear operation regime of p+-p-p+ silicon field effect transistors (FETs) was established, using a quantum-mechanical approach. A strong increase of τ c slope dependence on channel current is explained using quantization and tunneling concepts in terms of strong field dependence of the oxide layer single trap effective cross-section, which can be described by an amplification factor. Physical interpretation of this parameter deals with the amplification of the electron cross-section determined by both decreasing the critical field influence as a result of the minority carrier depletion and the potential barrier growth for electron capture. For the NW channel of n+-p-n+ FETs, the experimentally observed slope of τ c equals (-1). On the contrary, for the case of p+-p-p+ Si FETs in the accumulation regime, the experimentally observed slope of τ c equals (-2.8). It can be achieved when the amplification factor is about 12. Extraordinary high capture time slope values versus current are explained by the effective capture cross-section growth with decreasing electron concentration close to the nanowire-oxide interface.
The role of three-gluon correlation functions in the single spin asymmetry
Directory of Open Access Journals (Sweden)
Beppu Hiroo
2015-01-01
Full Text Available We study the twist-3 three-gluon contribution to the single spin asymmetry in the light-hadron production in pp collision in the framework of the collinear factorization. We derive the corresponding cross section formula in the leading order with respect to the QCD coupling constant. We also present a numerical calculation of the asymmetry at the RHIC energy, using a model for the three-gluon correlation functions suggested by the asymmetry for the D-meson production at RHIC. We found that the asymmetries for the light-hadron and the jet productions are very useful to constrain the magnitude and form of the correlation functions. Since the three-gluon correlation functions shift the asymmetry for all kinds of hadrons in the same direction, it is unlikely that they become a main source of the asymmetry.
Dennis Raj, A.; Jeeva, M.; Shankar, M.; Venkatesa Prabhu, G.; Vimalan, M.; Vetha Potheher, I.
2017-11-01
2-Naphthol substituted Mannich base 1-morpholino(phenyl)methyl)naphthalen-2-ol (MPMN), a potential NLO active organic single crystal was developed using acetonitrile as a solvent by slow evaporation method. The experimental and theoretical analysis made towards the exploitation in the field of electro-optic and NLO applications. The cubic structure with non-centrosymmetric space group Cc was confirmed and cell dimensions of the grown crystal were obtained from single crystal X-ray diffraction (XRD) study. The formation of the Csbnd Nsbnd C vibrational band at 1115 cm-1 in Fourier Transform Infra-Red (FTIR) analysis confirms the formation of MPMN compound. The placement of protons and carbons of MPMN were identified from Nuclear Magnetic Resonance Spectroscopy (NMR) analysis. The wide optical absorption window and the lower cutoff wavelength of MPMN show the suitability of the material for the various laser related applications. The presence of dislocations and growth pattern of crystal were analyzed using chemical etching technique. The Second Harmonic Generation (SHG) of MPMN was found to be 1.57 times greater than the standard KDP crystal. The laser damage threshold was measured by using Nd: YAG laser beam passed through the sample and it was found to be 1.006 GW/cm2. The electronic structure of the molecular system and the optical properties were also studied from quantum chemical calculations using Density Functional Theory (DFT) and reported for the first time.
Czech Academy of Sciences Publication Activity Database
Rontó, András; Rontó, M.
2009-01-01
Roč. 3, 1-2 (2009), s. 127-139 ISSN 0973-3590 Institutional research plan: CEZ:AV0Z10190503 Keywords : functional-differential equation * deviation of argument * linear boundary condition * successive approximations Subject RIV: BA - General Mathematics
Directory of Open Access Journals (Sweden)
Yanmei Sun
2012-01-01
Full Text Available By using the Leggett-Williams fixed theorem, we establish the existence of multiple positive solutions for second-order nonhomogeneous Sturm-Liouville boundary value problems with linear functional boundary conditions. One explicit example with singularity is presented to demonstrate the application of our main results.
Single cell cytometry of protein function in RNAi treated cells and in native populations
Directory of Open Access Journals (Sweden)
Hill Andrew
2008-08-01
Full Text Available Abstract Background High Content Screening has been shown to improve results of RNAi and other perturbations, however significant intra-sample heterogeneity is common and can complicate some analyses. Single cell cytometry can extract important information from subpopulations within these samples. Such approaches are important for immune cells analyzed by flow cytometry, but have not been broadly available for adherent cells that are critical to the study of solid-tumor cancers and other disease models. Results We have directly quantitated the effect of resolving RNAi treatments at the single cell level in experimental systems for both exogenous and endogenous targets. Analyzing the effect of an siRNA that targets GFP at the single cell level permits a stronger measure of the absolute function of the siRNA by gating to eliminate background levels of GFP intensities. Extending these methods to endogenous proteins, we have shown that well-level results of the knockdown of PTEN results in an increase in phospho-S6 levels, but at the single cell level, the correlation reveals the role of other inputs into the pathway. In a third example, reduction of STAT3 levels by siRNA causes an accumulation of cells in the G1 phase of the cell cycle, but does not induce apoptosis or necrosis when compared to control cells that express the same levels of STAT3. In a final example, the effect of reduced p53 levels on increased adriamycin sensitivity for colon carcinoma cells was demonstrated at the whole-well level using siRNA knockdown and in control and untreated cells at the single cell level. Conclusion We find that single cell analysis methods are generally applicable to a wide range of experiments in adherent cells using technology that is becoming increasingly available to most laboratories. It is well-suited to emerging models of signaling dysfunction, such as oncogene addition and oncogenic shock. Single cell cytometry can demonstrate effects on cell
Donati, Mauro; La Scala, Vincenzo; Billi, Mauro; Di Dino, Biagio; Torrisi, Paolo; Berglundh, Tord
2008-08-01
The aim of the present study was to evaluate the outcome of immediate functional loading of implants in single-tooth replacement using two different installation procedures. One hundred and fifty-one subjects, who required single-tooth rehabilitation in the area of 15-25 and 35-45, were enrolled in eight private clinics in Italy. The implant sites were randomly allocated to one of the following treatment groups. In the control group, in which a standard preparation procedure for implant placement and submerged healing of the implant was used, abutment connection and loading of the implants were performed 3 months after installation. In the test group 1, a standard preparation procedure for the implant placement and immediate functional loading of implant was carried out. In the test 2 group, however, a modified implant installation procedure (osteotome technique) was used followed by immediate functional loading of the implant. Clinical and radiographic examinations were performed at 3 and 12 months of follow-up at all sites. Three implants (5.5%) from the test 2 group (osteotome preparation) and one (2%) from the test 1 group (conventional drill preparation) failed to integrate and were removed one and three months after implant installation. The mean marginal bone loss assessed at 12 months was 0.31 mm (test 1), 0.25 mm (test 2) and 0.38 mm (control) (no statistically significant differences were found between the three treatment groups.) It is suggested that immediate functional loading of implants that are placed with a conventional installation technique and with sufficient primary stability may be considered as a valid treatment alternative in a single-tooth replacement.
Depuydt, Christophe E; Thys, Sofie; Beert, Johan; Jonckheere, Jef; Salembier, Geert; Bogers, Johannes J
2016-11-01
Persistent high-risk human papillomavirus (HPV) infection is strongly associated with development of high-grade cervical intraepithelial neoplasia or cancer (CIN3+). In single type infections, serial type-specific viral-load measurements predict the natural history of the infection. In infections with multiple HPV-types, the individual type-specific viral-load profile could distinguish progressing HPV-infections from regressing infections. A case-cohort natural history study was established using samples from untreated women with multiple HPV-infections who developed CIN3+ (n = 57) or cleared infections (n = 88). Enriched cell pellet from liquid based cytology samples were subjected to a clinically validated real-time qPCR-assay (18 HPV-types). Using serial type-specific viral-load measurements (≥3) we calculated HPV-specific slopes and coefficient of determination (R(2) ) by linear regression. For each woman slopes and R(2) were used to calculate which HPV-induced processes were ongoing (progression, regression, serial transient, transient). In transient infections with multiple HPV-types, each single HPV-type generated similar increasing (0.27copies/cell/day) and decreasing (-0.27copies/cell/day) viral-load slopes. In CIN3+, at least one of the HPV-types had a clonal progressive course (R(2) ≥ 0.85; 0.0025copies/cell/day). In selected CIN3+ cases (n = 6), immunostaining detecting type-specific HPV 16, 31, 33, 58 and 67 RNA showed an even staining in clonal populations (CIN3+), whereas in transient virion-producing infections the RNA-staining was less in the basal layer compared to the upper layer where cells were ready to desquamate and release newly-formed virions. RNA-hybridization patterns matched the calculated ongoing processes measured by R(2) and slope in serial type-specific viral-load measurements preceding the biopsy. In women with multiple HPV-types, serial type-specific viral-load measurements predict the natural history of the
Guo, Yang; Riplinger, Christoph; Becker, Ute; Liakos, Dimitrios G.; Minenkov, Yury; Cavallo, Luigi; Neese, Frank
2018-01-01
In this communication, an improved perturbative triples correction (T) algorithm for domain based local pair-natural orbital singles and doubles coupled cluster (DLPNO-CCSD) theory is reported. In our previous implementation, the semi-canonical approximation was used and linear scaling was achieved for both the DLPNO-CCSD and (T) parts of the calculation. In this work, we refer to this previous method as DLPNO-CCSD(T0) to emphasize the semi-canonical approximation. It is well-established that the DLPNO-CCSD method can predict very accurate absolute and relative energies with respect to the parent canonical CCSD method. However, the (T0) approximation may introduce significant errors in absolute energies as the triples correction grows up in magnitude. In the majority of cases, the relative energies from (T0) are as accurate as the canonical (T) results of themselves. Unfortunately, in rare cases and in particular for small gap systems, the (T0) approximation breaks down and relative energies show large deviations from the parent canonical CCSD(T) results. To address this problem, an iterative (T) algorithm based on the previous DLPNO-CCSD(T0) algorithm has been implemented [abbreviated here as DLPNO-CCSD(T)]. Using triples natural orbitals to represent the virtual spaces for triples amplitudes, storage bottlenecks are avoided. Various carefully designed approximations ease the computational burden such that overall, the increase in the DLPNO-(T) calculation time over DLPNO-(T0) only amounts to a factor of about two (depending on the basis set). Benchmark calculations for the GMTKN30 database show that compared to DLPNO-CCSD(T0), the errors in absolute energies are greatly reduced and relative energies are moderately improved. The particularly problematic case of cumulene chains of increasing lengths is also successfully addressed by DLPNO-CCSD(T).
Guo, Yang
2018-01-04
In this communication, an improved perturbative triples correction (T) algorithm for domain based local pair-natural orbital singles and doubles coupled cluster (DLPNO-CCSD) theory is reported. In our previous implementation, the semi-canonical approximation was used and linear scaling was achieved for both the DLPNO-CCSD and (T) parts of the calculation. In this work, we refer to this previous method as DLPNO-CCSD(T0) to emphasize the semi-canonical approximation. It is well-established that the DLPNO-CCSD method can predict very accurate absolute and relative energies with respect to the parent canonical CCSD method. However, the (T0) approximation may introduce significant errors in absolute energies as the triples correction grows up in magnitude. In the majority of cases, the relative energies from (T0) are as accurate as the canonical (T) results of themselves. Unfortunately, in rare cases and in particular for small gap systems, the (T0) approximation breaks down and relative energies show large deviations from the parent canonical CCSD(T) results. To address this problem, an iterative (T) algorithm based on the previous DLPNO-CCSD(T0) algorithm has been implemented [abbreviated here as DLPNO-CCSD(T)]. Using triples natural orbitals to represent the virtual spaces for triples amplitudes, storage bottlenecks are avoided. Various carefully designed approximations ease the computational burden such that overall, the increase in the DLPNO-(T) calculation time over DLPNO-(T0) only amounts to a factor of about two (depending on the basis set). Benchmark calculations for the GMTKN30 database show that compared to DLPNO-CCSD(T0), the errors in absolute energies are greatly reduced and relative energies are moderately improved. The particularly problematic case of cumulene chains of increasing lengths is also successfully addressed by DLPNO-CCSD(T).
International Nuclear Information System (INIS)
Mananghaya, M.; Rodulfo, E.; Santos, G.N.; Villagracia, A.; Mananghaya, M.
2012-01-01
An important technique to increase the solubility and reactivity of carbon nano tube is through functionalization. In this study, the effects of functionalization of some single-walled carbon nano tubes (SWCNTs) were investigated with the aid of density functional theory. The SWCNT model used in the study consists of a finite, (5, 0) zigzag nano tube segment containing 60 C atoms with hydrogen atoms added to the dangling bonds of the perimeter carbons. There are three water-dispersible SWCNTs used in this study that were functionalized with (a) formic acid, as a model of carboxylic acid, (b) isophthalic acid, as a model aromatic dicarboxylic acid, and (c) benzenesulfonic acid, as a model aromatic sulfonic acid. Binding energies of the organic radicals to the nano tubes are calculated, as well as the HOMO-LUMO gaps and dipole moments of both nano tubes and functionalized nano tubes. Binding was found out to be thermodynamically favorable. The functionalization increases the electrical dipole moments and results in an enhancement in the solubility of the nano tubes in water manifested through favorable changes in the free energies of solvation. This should lower the toxicity of nano tubes and improve their biocompatibility.
Single-cell profiling reveals GPCR heterogeneity and functional patterning during neuroinflammation.
Tischner, Denise; Grimm, Myriam; Kaur, Harmandeep; Staudenraus, Daniel; Carvalho, Jorge; Looso, Mario; Günther, Stefan; Wanke, Florian; Moos, Sonja; Siller, Nelly; Breuer, Johanna; Schwab, Nicholas; Zipp, Frauke; Waisman, Ari; Kurschus, Florian C; Offermanns, Stefan; Wettschureck, Nina
2017-08-03
GPCR expression was intensively studied in bulk cDNA of leukocyte populations, but limited data are available with respect to expression in individual cells. Here, we show a microfluidic-based single-cell GPCR expression analysis in primary T cells, myeloid cells, and endothelial cells under naive conditions and during experimental autoimmune encephalomyelitis, the mouse model of multiple sclerosis. We found that neuroinflammation induces characteristic changes in GPCR heterogeneity and patterning, and we identify various functionally relevant subgroups with specific GPCR profiles among spinal cord-infiltrating CD4 T cells, macrophages, microglia, or endothelial cells. Using GPCRs CXCR4, S1P1, and LPHN2 as examples, we show how this information can be used to develop new strategies for the functional modulation of Th17 cells and activated endothelial cells. Taken together, single-cell GPCR expression analysis identifies functionally relevant subpopulations with specific GPCR repertoires and provides a basis for the development of new therapeutic strategies in immune disorders.
Burov, Stanislav; Figliozzi, Patrick; Lin, Binhua; Rice, Stuart A; Scherer, Norbert F; Dinner, Aaron R
2017-01-10
We present a general method for detecting and correcting biases in the outputs of particle-tracking experiments. Our approach is based on the histogram of estimated positions within pixels, which we term the single-pixel interior filling function (SPIFF). We use the deviation of the SPIFF from a uniform distribution to test the veracity of tracking analyses from different algorithms. Unbiased SPIFFs correspond to uniform pixel filling, whereas biased ones exhibit pixel locking, in which the estimated particle positions concentrate toward the centers of pixels. Although pixel locking is a well-known phenomenon, we go beyond existing methods to show how the SPIFF can be used to correct errors. The key is that the SPIFF aggregates statistical information from many single-particle images and localizations that are gathered over time or across an ensemble, and this information augments the single-particle data. We explicitly consider two cases that give rise to significant errors in estimated particle locations: undersampling the point spread function due to small emitter size and intensity overlap of proximal objects. In these situations, we show how errors in positions can be corrected essentially completely with little added computational cost. Additional situations and applications to experimental data are explored in SI Appendix In the presence of experimental-like shot noise, the precision of the SPIFF-based correction achieves (and can even exceed) the unbiased Cramér-Rao lower bound. We expect the SPIFF approach to be useful in a wide range of localization applications, including single-molecule imaging and particle tracking, in fields ranging from biology to materials science to astronomy.
DEFF Research Database (Denmark)
Apitz, Dirk; Bertram, R.P.; Benter, N.
2005-01-01
Free-beam interferometry and angle-resolved absorption spectra are used to investigate the linear electro-optic coefficients and the linear dichroism in photoaddressable bis-azo copolymer thin films. From the first- and second order parameters deduced, the chromophore orientation distribution is ...... by density-functional calculations support the picture of differently aligned bis-azo dye molecules in a trans,trans configuration. Complementary wide-angle x-ray scattering is recorded to confirm the various kinds of ordering in samples poled at different temperatures....
International Nuclear Information System (INIS)
Marchand, C.
1987-09-01
The He3 nuclear structure was studied, particularly the longitudinal and transverse response functions and the momentum distribution of high linear momentum protons. Measurements of the inclusive cross sections for incident energies between 120 and 667 MeV were used to derive the electromagnetic response functions for momentum and energy transfers covering the quasi-elastic region and a part of the delta resonance (1232). The Coulomb sum rule is saturated for momentum transfers ≥ 500 MeV/sec. The drop to zero of the longitudinal response after the quasi-elastic peak confirms the transverse nature of the mesic exchange currents and of the excitation of the delta resonance in the nucleus. Measurement of the (e, e'p) exclusive cross sections at 560 MeV incident energy allowed a direct determination of proton linear momentum distributions at 300 to 600 MeV/c for the pd and ppn decay channels. The data agree with wave function calculations and do not indicate an excess of high momentum components. Analysis of the ppn decay channel indicates that high linear momentum components in He3 are dominated by two-nucleon processes, i.e., nucleon-nucleon correlations at medium and short range. Kinematic evidence supports this picture: displacement of the missing energy and dynamic spectra, and comparison of the linear momentum distribution for protons in He3 and deuterium [fr
The electronic fine structure of 4-nitrophenyl functionalized single-walled carbon nanotubes
International Nuclear Information System (INIS)
Chakraborty, Amit K; Coleman, Karl S; Dhanak, Vinod R
2009-01-01
Controlling the electronic structure of carbon nanotubes (CNTs) is of great importance to various CNT based applications. Herein the electronic fine structure of single-walled carbon nanotube films modified with 4-nitrophenyl groups, produced following reaction with 4-nitrobenzenediazonium tetrafluoroborate, was investigated for the first time. Various techniques such as x-ray and ultra-violet photoelectron spectroscopy, and near edge x-ray absorption fine structure studies were used to explore the electronic structure, and the results were compared with the measured electrical resistances. A reduction in number of the π electronic states in the valence band consistent with the increased resistance of the functionalized nanotube films was observed.
Realisation of all 16 Boolean logic functions in a single magnetoresistance memory cell
Gao, Shuang; Yang, Guang; Cui, Bin; Wang, Shouguo; Zeng, Fei; Song, Cheng; Pan, Feng
2016-06-01
Stateful logic circuits based on next-generation nonvolatile memories, such as magnetoresistance random access memory (MRAM), promise to break the long-standing von Neumann bottleneck in state-of-the-art data processing devices. For the successful commercialisation of stateful logic circuits, a critical step is realizing the best use of a single memory cell to perform logic functions. In this work, we propose a method for implementing all 16 Boolean logic functions in a single MRAM cell, namely a magnetoresistance (MR) unit. Based on our experimental results, we conclude that this method is applicable to any MR unit with a double-hump-like hysteresis loop, especially pseudo-spin-valve magnetic tunnel junctions with a high MR ratio. Moreover, after simply reversing the correspondence between voltage signals and output logic values, this method could also be applicable to any MR unit with a double-pit-like hysteresis loop. These results may provide a helpful solution for the final commercialisation of MRAM-based stateful logic circuits in the near future.Stateful logic circuits based on next-generation nonvolatile memories, such as magnetoresistance random access memory (MRAM), promise to break the long-standing von Neumann bottleneck in state-of-the-art data processing devices. For the successful commercialisation of stateful logic circuits, a critical step is realizing the best use of a single memory cell to perform logic functions. In this work, we propose a method for implementing all 16 Boolean logic functions in a single MRAM cell, namely a magnetoresistance (MR) unit. Based on our experimental results, we conclude that this method is applicable to any MR unit with a double-hump-like hysteresis loop, especially pseudo-spin-valve magnetic tunnel junctions with a high MR ratio. Moreover, after simply reversing the correspondence between voltage signals and output logic values, this method could also be applicable to any MR unit with a double-pit-like hysteresis
Single-particle spectral function of a generalized Hubbard model: Metal-insulator transition
Gagliano, E. R.; Aligia, A. A.; Arrachea, Liliana; Avignon, Michel
1995-05-01
A generalized Hubbard model with correlated hoppings is studied at half filling using exact diagonalization methods. For certain values of the hopping parameters our results for several static properties, the Drude weight and the single-particle spectra function, suggest the occurrence of a metal-insulator transition (MIT) at a finite value of the local Coulomb interaction Uc. We identify the regions of the hopping parameters where the MIT is of the Mott type. In these regions, for large U
Functions and requirements for Hanford single-shell tank leakage detection and monitoring
Energy Technology Data Exchange (ETDEWEB)
Cruse, J.M.; Ohl, P.C.
1995-04-19
This document provides the initial functions and requirements for leakage detection and monitoring applicable to past and potential future leakage from the Hanford Site`s 149 single-shell high-level waste tanks. This mission is a part of the overall mission of the Westinghouse Hanford Company Tank Waste Remediation System division to remediate the tank waste in a safe and acceptable manner. Systems engineering principles are being applied to this effort. This document reflects the an initial step in the systems engineering approach to decompose the mission into primary functions and requirements. The document is considered approximately 30% complete relative to the effort required to produce a final version that can be used to support demonstration and/or procurement of technologies. The functions and requirements in this document apply to detection and monitoring of below ground leaks from SST containment boundaries and the resulting soil contamination. Leakage detection and monitoring is invoked in the TWRS Program in three fourth level functions: (1) Store Waste, (2) Retrieve Waste, and (3) Disposition Excess Facilities (as identified in DOE/RL-92-60 Rev. 1, Tank Waste Remediation System Functions and Requirements).
The syntax of single words: Evidence from a patient with a selective function word reading deficit.
Druks, Judit; Froud, Karen
2002-05-01
We describe the reading performance of a patient who has selective deficits for reading nonwords, function words, and morphologically complex words in isolation. His reading of highly abstract nouns and verbs, however, is relatively well preserved. He can recognise and comprehend the meaning of written function words, of derivational morphology, and of most inflectional morphology. We suggest that his deficit in reading grammatical morphemes is unrelated to his problems in reading nonwords and cannot be explained by their low semanticity and imageability. The patient's speech is ungrammatical but is not devoid of grammatical morphemes and his reading of functional elements improves when these are presented within the context of sentences. We argue that syntactic information relevant to individual lexical items including information about how the word may potentially be used within a phrase must be accessed during single word reading tasks (e.g., Levelt, 1989). This is particularly difficult for function words due to their linguistic specification, which is different from that of lexical categories (Chomsky, 1995). Both linguistic theory and Garrett's (e.g., 1982) model of sentence processing account for the patient's improved reading of function words in the context of sentences.
Energy Technology Data Exchange (ETDEWEB)
Jayaprakash, P. [PG & Research Department of Physics, Arignar Anna Govt. Arts College, Cheyyar 604 407, Tamil Nadu (India); Peer Mohamed, M. [PG & Research Department of Physics, Arignar Anna Govt. Arts College, Cheyyar 604 407, Tamil Nadu (India); Department of Physics, C. Abdul Hakeem College, Melvisharam 632 509, Tamil Nadu (India); Krishnan, P. [Department of Physics, St. Joseph’s College of Engineering, Chennai 600 119, Tamil Nadu (India); Nageshwari, M.; Mani, G. [PG & Research Department of Physics, Arignar Anna Govt. Arts College, Cheyyar 604 407, Tamil Nadu (India); Lydia Caroline, M., E-mail: lydiacaroline2006@yahoo.co.in [PG & Research Department of Physics, Arignar Anna Govt. Arts College, Cheyyar 604 407, Tamil Nadu (India)
2016-12-15
Single crystals of L-phenylalanine dl-mandelic acid [C{sub 9}H{sub 11}NO{sub 2}. C{sub 8}H{sub 8}O{sub 3}], have been grown by the slow evaporation technique at room temperature using aqueous solution. The single crystal XRD study confirms monoclinic system for the grown crystal. The functional groups present in the grown crystal have been identified by FTIR and FT-Raman analyses. The optical absorption studies show that the crystal is transparent in the visible region with a lower cut-off wavelength of 257 nm and the optical band gap energy E{sub g} is determined to be 4.62 eV. The Kurtz powder second harmonic generation was confirmed using Nd:YAG laser with fundamental wavelength of 1064 nm. Further, the thermal studies confirmed no weight loss up to 150°C for the as-grown crystal. The photoluminescence spectrum exhibited three peaks (414 nm, 519 nm, 568 nm) due to the donation of protons from carboxylic acid to amino group. Laser damage threshold value was found to be 4.98 GW/cm{sup 2}. The Vickers microhardness test was carried out on the grown crystals and there by Vickers hardness number (H{sub v}), work hardening coefficient (n), yield strength (σ{sub y}), stiffness constant C{sub 11} were evaluated. The dielectric behavior of the crystal has been determined in the frequency range 50 Hz–5 MHz at various temperatures.
Single image super-resolution based on approximated Heaviside functions and iterative refinement.
Wang, Xin-Yu; Huang, Ting-Zhu; Deng, Liang-Jian
2018-01-01
One method of solving the single-image super-resolution problem is to use Heaviside functions. This has been done previously by making a binary classification of image components as "smooth" and "non-smooth", describing these with approximated Heaviside functions (AHFs), and iteration including l1 regularization. We now introduce a new method in which the binary classification of image components is extended to different degrees of smoothness and non-smoothness, these components being represented by various classes of AHFs. Taking into account the sparsity of the non-smooth components, their coefficients are l1 regularized. In addition, to pick up more image details, the new method uses an iterative refinement for the residuals between the original low-resolution input and the downsampled resulting image. Experimental results showed that the new method is superior to the original AHF method and to four other published methods.
Single image super-resolution based on approximated Heaviside functions and iterative refinement.
Directory of Open Access Journals (Sweden)
Xin-Yu Wang
Full Text Available One method of solving the single-image super-resolution problem is to use Heaviside functions. This has been done previously by making a binary classification of image components as "smooth" and "non-smooth", describing these with approximated Heaviside functions (AHFs, and iteration including l1 regularization. We now introduce a new method in which the binary classification of image components is extended to different degrees of smoothness and non-smoothness, these components being represented by various classes of AHFs. Taking into account the sparsity of the non-smooth components, their coefficients are l1 regularized. In addition, to pick up more image details, the new method uses an iterative refinement for the residuals between the original low-resolution input and the downsampled resulting image. Experimental results showed that the new method is superior to the original AHF method and to four other published methods.
Functional mapping of cell surface proteins with localized stimulation of single cells
Sun, Bingyun; Chiu, Daniel T.
2003-11-01
This paper describes the development of using individual micro and nano meter-sized vesicles as delivery vessels to functionally map the distribution of cell surface proteins at the level of single cells. The formation of different sizes of vesicles from tens of nanometers to a few micrometers in diameter that contain the desired molecules is addressed. An optical trap is used to manipulate the loaded vesicle to specific cell morphology of interest, and a pulsed UV laser is used to photo-release the stimuli onto the cell membrane. Carbachol activated cellular calcium flux, upon binding to muscarinic acetylcholine receptors, is studied by this method, and the potential of using this method for the functional mapping of localized proteins on the cell surface membrane is discussed.
Single injection techniques in determining age-related changes in porcine renal function
International Nuclear Information System (INIS)
Robbins, M.E.C.
1984-01-01
Glomerular filtration rate (GFR) and effective renal plasma flow (ERPF) were determined in 32 anaesthetised female Large White pigs, aged 4-24 months, from the plasma disappearance curves of [sup(99m)Tc]DTPA and [ 131 I]hippuran respectively. Clearance was also monitored by external counting over the heart. GFR and ERPF increased markedly with age in pigs up to 12 months old, reaching mean values of 242.06 +- 5.89 and 919.39 +- 79.01 mL/min. In pigs aged 12-24 months ERPF increased slightly but renal function remained essentially unchanged after 1 yr of age. These results for renal function were similar to previous estimates, using continuous infusion techniques inferring that GFR and ERPF could be accurately monitored using single injection procedures. (author)
Energy decomposition analysis of single bonds within Kohn-Sham density functional theory.
Levine, Daniel S; Head-Gordon, Martin
2017-11-28
An energy decomposition analysis (EDA) for single chemical bonds is presented within the framework of Kohn-Sham density functional theory based on spin projection equations that are exact within wave function theory. Chemical bond energies can then be understood in terms of stabilization caused by spin-coupling augmented by dispersion, polarization, and charge transfer in competition with destabilizing Pauli repulsions. The EDA reveals distinguishing features of chemical bonds ranging across nonpolar, polar, ionic, and charge-shift bonds. The effect of electron correlation is assessed by comparison with Hartree-Fock results. Substituent effects are illustrated by comparing the C-C bond in ethane against that in bis(diamantane), and dispersion stabilization in the latter is quantified. Finally, three metal-metal bonds in experimentally characterized compounds are examined: a [Formula: see text]-[Formula: see text] dimer, the [Formula: see text]-[Formula: see text] bond in dizincocene, and the Mn-Mn bond in dimanganese decacarbonyl.
International Nuclear Information System (INIS)
Dominguez, Dany S.; Barros, Ricardo C.
2007-01-01
A new spectral nodal method is developed for the solution of one-speed discrete ordinates (S N ) problems with isotropic scattering in X, Y geometry. In this method, the spectral Green's function (SGF) scheme, originally developed for solving S N problems in slab-geometry with no spatial truncation error, is generalized to solve the one-dimensional transverse-integrated S N linear-nodal equations with linear polynomial approximation for the transverse leakage terms. The resulting SGF-linear-nodal (SGF-LN) equations are solved with the full-node inversion (FNI) iterative scheme, which uses the best available estimates for the node-entering quantities to evaluate the node angular quantities in all the exiting directions as the equations are swept across the system. We give numerical results that illustrate the accuracy of the SGF-LN method for coarse-mesh calculations
Directory of Open Access Journals (Sweden)
Zhi Han
2017-01-01
Full Text Available We presented a novel workflow for detecting distribution patterns in cell populations based on single-cell transcriptome study. With the fast adoption of single-cell analysis, a challenge to researchers is how to effectively extract gene features to meaningfully separate the cell population. Considering that coexpressed genes are often functionally or structurally related and the number of coexpressed modules is much smaller than the number of genes, our workflow uses gene coexpression modules as features instead of individual genes. Thus, when the coexpressed modules are summarized into eigengenes, not only can we interactively explore the distribution of cells but also we can promptly interpret the gene features. The interactive visualization is aided by a novel application of spatial statistical analysis to the scatter plots using a clustering index parameter. This parameter helps to highlight interesting 2D patterns in the scatter plot matrix (SPLOM. We demonstrated the effectiveness of the workflow using two large single-cell studies. In the Allen Brain scRNA-seq dataset, the visual analytics suggested a new hypothesis such as the involvement of glutamate metabolism in the separation of the brain cells. In a large glioblastoma study, a sample with a unique cell migration related signature was identified.
Singer, Florian; Stern, Georgette; Thamrin, Cindy; Fuchs, Oliver; Riedel, Thomas; Gustafsson, Per; Frey, Urs; Latzin, Philipp
2011-01-01
Background Small airway disease frequently occurs in chronic lung diseases and may cause ventilation inhomogeneity (VI), which can be assessed by washout tests of inert tracer gas. Using two tracer gases with unequal molar mass (MM) and diffusivity increases specificity for VI in different lung zones. Currently washout tests are underutilised due to the time and effort required for measurements. The aim of this study was to develop and validate a simple technique for a new tidal single breath washout test (SBW) of sulfur hexafluoride (SF6) and helium (He) using an ultrasonic flowmeter (USFM). Methods The tracer gas mixture contained 5% SF6 and 26.3% He, had similar total MM as air, and was applied for a single tidal breath in 13 healthy adults. The USFM measured MM, which was then plotted against expired volume. USFM and mass spectrometer signals were compared in six subjects performing three SBW. Repeatability and reproducibility of SBW, i.e., area under the MM curve (AUC), were determined in seven subjects performing three SBW 24 hours apart. Results USFM reliably measured MM during all SBW tests (n = 60). MM from USFM reflected SF6 and He washout patterns measured by mass spectrometer. USFM signals were highly associated with mass spectrometer signals, e.g., for MM, linear regression r-squared was 0.98. Intra-subject coefficient of variation of AUC was 6.8%, and coefficient of repeatability was 11.8%. Conclusion The USFM accurately measured relative changes in SF6 and He washout. SBW tests were repeatable and reproducible in healthy adults. We have developed a fast, reliable, and straightforward USFM based SBW method, which provides valid information on SF6 and He washout patterns during tidal breathing. PMID:21423739
Kaur, H; Carvalho, J; Looso, M; Singh, P; Chennupati, R; Preussner, J; Günther, S; Albarrán-Juárez, J; Tischner, D; Classen, S; Offermanns, S; Wettschureck, N
2017-06-16
G-protein-coupled receptor (GPCR) expression is extensively studied in bulk cDNA, but heterogeneity and functional patterning of GPCR expression in individual vascular cells is poorly understood. Here, we perform a microfluidic-based single-cell GPCR expression analysis in primary smooth muscle cells (SMC) and endothelial cells (EC). GPCR expression is highly heterogeneous in all cell types, which is confirmed in reporter mice, on the protein level and in human cells. Inflammatory activation in murine models of sepsis or atherosclerosis results in characteristic changes in the GPCR repertoire, and we identify functionally relevant subgroups of cells that are characterized by specific GPCR patterns. We further show that dedifferentiating SMC upregulate GPCRs such as Gpr39, Gprc5b, Gprc5c or Gpr124, and that selective targeting of Gprc5b modulates their differentiation state. Taken together, single-cell profiling identifies receptors expressed on pathologically relevant subpopulations and provides a basis for the development of new therapeutic strategies in vascular diseases.
Measurement system of correlation functions of microwave single photon source in real time
Korenkov, A.; Dmitriev, A.; Astafiev, O.
2018-02-01
Several quantum setups, such as quantum key distribution networks[1] and quantum simulators (e.g. boson sampling), by their design rely on single photon sources (SPSs). These quantum setups were demonstrated to operate in optical frequency domain. However, following the steady advances in circuit quantum electrodynamics, a proposal has been made recently[2] to demonstrate boson sampling with microwave photons. This in turn requires the development of reliable microwave SPS. It's one of the most important characteristics are the first-order and the second-order correlation functions g1 and g2. The measurement technique of g1 and g2 is significantly different from that in the optical domain [3],[4] because of the current unavailability of microwave single-photon detectors. In particular, due to high levels of noise present in the system a substantial amount of statistics in needed to be acquired. This work presents a platform for measurement of g1 and g2 that processes the incoming data in real time, maximizing the efficiency of data acquisition. The use of field-programmable gate array (FPGA) electronics, common in similar experiments[3] but complex in programming, is avoided; instead, the calculations are performed on a standard desktop computer. The platform is used to perform the measurements of the first-order and the second-order correlation functions of the microwave SPS.
Ali, Mubarak; Ramirez, Patricio; Nguyen, Hung Quoc; Nasir, Saima; Cervera, Javier; Mafe, Salvador; Ensinger, Wolfgang
2012-04-24
We present an experimental and theoretical characterization of single cigar-shaped nanopores with pH-responsive carboxylic acid and lysine chains functionalized on the pore surface. The nanopore characterization includes (i) optical images of the nanostructure obtained by FESEM; (ii) different chemical procedures for the nanopore preparation (etching time and functionalizations; pH and electrolyte concentration of the external solution) allowing externally tunable nanopore responses monitored by the current-voltage (I-V) curves; and (iii) transport simulations obtained with a multilayer nanopore model. We show that a single, approximately symmetric nanopore can be operated as a reconfigurable diode showing different rectifying behaviors by applying chemical and electrical signals. The remarkable characteristics of the new nanopore are the sharp response observed in the I-V curves, the improved tunability (with respect to previous designs of symmetric nanopores) which is achieved because of the direct external access to the nanostructure mouths, and the broad range of rectifying properties. The results concern both fundamental concepts useful for the understanding of transport processes in biological systems (ion channels) and applications relevant for tunable nanopore technology (information processing and drug controlled release).
Each protomer of a dimeric YidC functions as a single membrane insertase.
Spann, Dirk; Pross, Eva; Chen, Yuanyuan; Dalbey, Ross E; Kuhn, Andreas
2018-01-12
The membrane insertase YidC catalyzes the entrance of newly synthesized proteins into the lipid bilayer. As an integral membrane protein itself, YidC can be found as a monomer, a dimer or also as a member of the holotranslocase SecYEGDF-YajC-YidC. To investigate whether the dimeric YidC is functional and whether two copies cooperate to insert a single substrate, we constructed a fusion protein where two copies of YidC are connected by a short linker peptide. The 120 kDa protein is stable and functional as it supports the membrane insertion of the M13 procoat protein, the C-tailed protein SciP and the fusion protein Pf3-Lep. Mutations that inhibit either protomer do not inactivate the insertase and rather keep it functional. When both protomers are defective, the substrate proteins accumulate in the cytoplasm. This suggests that the dimeric YidC operates as two insertases. Consistent with this, we show that the dimeric YidC can bind two substrate proteins simultaneously, suggesting that YidC indeed functions as a monomer.
Single and dual incision technique for acute distal biceps rupture: clinical and functional outcomes
Guglielmino, Claudia; Massimino, Paolo; Ioppolo, Francesco; Castorina, Sergio; Musumeci, Giuseppe; Di Giunta, Angelo
2016-01-01
Summary Background Distal bicep tendon injuries are a traumatic event though rather rare. The pathogenesis is not entirely clear. The most common cause for injury is an unexpected load on the biceps when the elbow is in an extended position. Although several studies have provided insight into the pathogenetic processes of the lesion, the literature suggests to treat all injuries surgically (whether partial or total) if there is high functional demand. Methods Between January 2006 and March 2016 were studied 20 patients surgically treated for a disconnected distal bicep, 15 with a total lesion and 5 with a partial lesion. The patients were divided into 2 groups. Surgical access with single incision was performed on 13 patients while a double surgical access was performed on 7 patients. The clinical and functional results were studied using an Ewald System Score (ESS). Results In both groups, the most rapid improvement was achieved for the parameters of pain and deformity with excellent results, while those of function and movement were normalized as gradual and progressive over next 2 months. Conclusion The clinical and functional outcomes during the follow-up examination after surgery showed excellent results in patients treated with both types of surgical procedures. PMID:28217566
From tomography to full-waveform inversion with a single objective function
Alkhalifah, Tariq Ali
2014-02-17
In full-waveform inversion (FWI), a gradient-based update of the velocity model requires an initial velocity that produces synthetic data that are within a half-cycle, everywhere, from the field data. Such initial velocity models are usually extracted from migration velocity analysis or traveltime tomography, among other means, and are not guaranteed to adhere to the FWI requirements for an initial velocity model. As such, we evaluated an objective function based on the misfit in the instantaneous traveltime between the observed and modeled data. This phase-based attribute of the wavefield, along with its phase unwrapping characteristics, provided a frequency-dependent traveltime function that was easy to use and quantify, especially compared to conventional phase representation. With a strong Laplace damping of the modeled, potentially low-frequency, data along the time axis, this attribute admitted a first-arrival traveltime that could be compared with picked ones from the observed data, such as in wave equation tomography (WET). As we relax the damping on the synthetic and observed data, the objective function measures the misfit in the phase, however unwrapped. It, thus, provided a single objective function for a natural transition from WET to FWI. A Marmousi example demonstrated the effectiveness of the approach.
Multi-Channel Distributed Coordinated Function over Single Radio in Wireless Sensor Networks
Directory of Open Access Journals (Sweden)
Kok-Keong (Jonathan Loo
2011-01-01
Full Text Available Multi-channel assignments are becoming the solution of choice to improve performance in single radio for wireless networks. Multi-channel allows wireless networks to assign different channels to different nodes in real-time transmission. In this paper, we propose a new approach, Multi-channel Distributed Coordinated Function (MC-DCF which takes advantage of multi-channel assignment. The backoff algorithm of the IEEE 802.11 distributed coordination function (DCF was modified to invoke channel switching, based on threshold criteria in order to improve the overall throughput for wireless sensor networks (WSNs over 802.11 networks. We presented simulation experiments in order to investigate the characteristics of multi-channel communication in wireless sensor networks using an NS2 platform. Nodes only use a single radio and perform channel switching only after specified threshold is reached. Single radio can only work on one channel at any given time. All nodes initiate constant bit rate streams towards the receiving nodes. In this work, we studied the impact of non-overlapping channels in the 2.4 frequency band on: constant bit rate (CBR streams, node density, source nodes sending data directly to sink and signal strength by varying distances between the sensor nodes and operating frequencies of the radios with different data rates. We showed that multi-channel enhancement using our proposed algorithm provides significant improvement in terms of throughput, packet delivery ratio and delay. This technique can be considered for WSNs future use in 802.11 networks especially when the IEEE 802.11n becomes popular thereby may prevent the 802.15.4 network from operating effectively in the 2.4 GHz frequency band.
Multi-channel distributed coordinated function over single radio in wireless sensor networks.
Campbell, Carlene E-A; Loo, Kok-Keong Jonathan; Gemikonakli, Orhan; Khan, Shafiullah; Singh, Dhananjay
2011-01-01
Multi-channel assignments are becoming the solution of choice to improve performance in single radio for wireless networks. Multi-channel allows wireless networks to assign different channels to different nodes in real-time transmission. In this paper, we propose a new approach, Multi-channel Distributed Coordinated Function (MC-DCF) which takes advantage of multi-channel assignment. The backoff algorithm of the IEEE 802.11 distributed coordination function (DCF) was modified to invoke channel switching, based on threshold criteria in order to improve the overall throughput for wireless sensor networks (WSNs) over 802.11 networks. We presented simulation experiments in order to investigate the characteristics of multi-channel communication in wireless sensor networks using an NS2 platform. Nodes only use a single radio and perform channel switching only after specified threshold is reached. Single radio can only work on one channel at any given time. All nodes initiate constant bit rate streams towards the receiving nodes. In this work, we studied the impact of non-overlapping channels in the 2.4 frequency band on: constant bit rate (CBR) streams, node density, source nodes sending data directly to sink and signal strength by varying distances between the sensor nodes and operating frequencies of the radios with different data rates. We showed that multi-channel enhancement using our proposed algorithm provides significant improvement in terms of throughput, packet delivery ratio and delay. This technique can be considered for WSNs future use in 802.11 networks especially when the IEEE 802.11n becomes popular thereby may prevent the 802.15.4 network from operating effectively in the 2.4 GHz frequency band.
Drew, Michael E.
The atomic force microscope (AFM) has fueled interest in nanotechnology because of its ability to image surfaces at the nanometer level and act as a molecular force sensor. Functionalization of the surface of an AFM tip surface in a stable, controlled manner expands the capabilities of the AFM and enables additional applications in the fields of single molecule force spectroscopy and nanolithography. Two AFM tip functionalizations are described: the assembly of tripodal molecular tips onto gold AFM tips and the photochemical attachment of terminal alkenes to nanocrystalline diamond (NCD) AFM tips. Two separate tripodal molecules with different linker lengths and a monopodal molecule terminated with biotin were synthesized to attach to a gold AFM tip for single molecule force spectroscopy. The immobilization of these molecules was examined by contact angle measurements, spectroscopic ellipsometry, infrared, and near edge x-ray absorption fine structure (NEXAFS) spectroscopy. All three molecules displayed rupture forces that agreed with previously reported values for the biotin--avidin rupture. The tripodal molecular tip displayed narrower distribution in their force histograms than the monopodal molecular tip. The performance of the tripodal molecular tip was compared to the monopodal molecular tip in single molecule force spectroscopy studies. Over repeated measurements, the distribution of forces for the monopodal molecular tip shifted to lower forces, whereas the distribution for the tripodal molecular tip remained constant throughout. Loading rate dependence and control experiments further indicated that the rupture forces of the tripod molecular tips were specific to the biotin--NeutrAvidin interaction. The second functionalization method used the photochemical attachment of undecylenic acid to NCD AFM tips. The photochemical attachment of undecylenic acid to hydrogen-terminated NCD wafer surfaces was investigated by contact angle measurements, x
Dynamical Study of a Second Order DPCM Transmission System Modeled by a Piece-Wise Linear Function
Taralova, Ina; Fournier-Prunaret, D.
2009-01-01
17 pages; International audience; This paper analyses the behaviour of a second order DPCM (Differential Pulse Code Modulation) transmission system when the nonlinear characteristic of the quantizer is taken into consideration. In this way, qualitatively new properties of the DPCM system have been unravelled, which cannot be observed and explained if the nonlinearity of the quantizer is neglected. For the purposes of this study, a piece-wise linear nondifferentiable quantizer characteristic i...
Functionalization of single-walled carbon nanotubes regulates their effect on hemostasis
International Nuclear Information System (INIS)
Sokolov, A V; Aseychev, A V; Kostevich, V A; Gusev, A A; Gusev, S A; Vlasova, I I
2011-01-01
Applications of single-walled carbon nanotubes (SWNTs) in medical field imply the use of drug-coupled carbon nanotubes as well as carbon nanotubes functionalized with different chemical groups that change nanotube surface properties and interactions between nanotubes and cells. Covalent attachment of polyethylene glycol (PEG) to carboxylated single-walled carbon nanotubes (c-SWNT) is known to prevent the nanotubes from interaction with macrophages. Here we characterized nanotube's ability to stimulate coagulation processes in platelet-poor plasma (PPP), and evaluated the effect of SWNTs on platelet aggregation in platelet-rich plasma (PRP). Our study showed that PEG-SWNT did not affect the rate of clotting in PPP, while c-SWNT shortened the clot formation time five times compared to the control PPP. Since c-SWNT failed to accelerate coagulation in plasma lacking coagulation factor XI, it may be suggested that c-SWNT affects the contact activation pathway. In PRP, platelets responded to both SWNT types with irreversible aggregation, as evidenced by changes in the aggregate mean radius. However, the rate of aggregation induced by c-SWNT was two times higher than it was with PEG-SWNT. Cytological analysis also showed that c-SWNT was two times more efficient when compared to PEG-SWNT in aggregating platelets in PRP. Taken together, our results show that functionalization of nanoparticles can diminish their negative influence on blood cells. As seen from our data, modification of c-SWNT with PEG, when only a one percent of carbon atoms is bound to polymer (70 wt %), decreased the nanotube-induced coagulation in PRP and repelled the accelerating effect on the coagulation in PPP. Thus, when functionalized SWNTs are used for administration into bloodstream of laboratory animals, their possible pro-coagulant and pro-aggregating properties must be taken into account.
Functionalization of single-walled carbon nanotubes regulates their effect on hemostasis
Energy Technology Data Exchange (ETDEWEB)
Sokolov, A V; Aseychev, A V; Kostevich, V A; Gusev, A A; Gusev, S A; Vlasova, I I, E-mail: irina.vlasova@yahoo.com [Research Institute for Physico-Chemical Medicine, FMBA, M. Pirogovskaya Str. 1a, Moscow (Russian Federation)
2011-04-01
Applications of single-walled carbon nanotubes (SWNTs) in medical field imply the use of drug-coupled carbon nanotubes as well as carbon nanotubes functionalized with different chemical groups that change nanotube surface properties and interactions between nanotubes and cells. Covalent attachment of polyethylene glycol (PEG) to carboxylated single-walled carbon nanotubes (c-SWNT) is known to prevent the nanotubes from interaction with macrophages. Here we characterized nanotube's ability to stimulate coagulation processes in platelet-poor plasma (PPP), and evaluated the effect of SWNTs on platelet aggregation in platelet-rich plasma (PRP). Our study showed that PEG-SWNT did not affect the rate of clotting in PPP, while c-SWNT shortened the clot formation time five times compared to the control PPP. Since c-SWNT failed to accelerate coagulation in plasma lacking coagulation factor XI, it may be suggested that c-SWNT affects the contact activation pathway. In PRP, platelets responded to both SWNT types with irreversible aggregation, as evidenced by changes in the aggregate mean radius. However, the rate of aggregation induced by c-SWNT was two times higher than it was with PEG-SWNT. Cytological analysis also showed that c-SWNT was two times more efficient when compared to PEG-SWNT in aggregating platelets in PRP. Taken together, our results show that functionalization of nanoparticles can diminish their negative influence on blood cells. As seen from our data, modification of c-SWNT with PEG, when only a one percent of carbon atoms is bound to polymer (70 wt %), decreased the nanotube-induced coagulation in PRP and repelled the accelerating effect on the coagulation in PPP. Thus, when functionalized SWNTs are used for administration into bloodstream of laboratory animals, their possible pro-coagulant and pro-aggregating properties must be taken into account.
Hattori, Yasunori; Doi, Kazuteru; Ikeda, Keisuke; Estrella, Emmanuel P
2006-01-01
To compare the functional outcome of successful microsurgical replantation versus amputation closure for single fingertip amputations. Forty-six fingertip amputations in 46 patients (23 were replanted successfully, 23 had amputation closure) were included in this study. Thumb amputations were excluded. Grip strength and active range of motion of the proximal interphalangeal joint were evaluated. The patients were questioned about their symptoms of pain, paresthesia, and cold intolerance. The Disabilities of the Arm, Shoulder, and Hand questionnaire was given and the disability/symptom score was evaluated. Patients' satisfaction with the surgical result was assessed. Time spent in the hospital and time off from work were reviewed. Active range of motion of the proximal interphalangeal joint was greater in the successful replantation group. Although the existence of paresthesia and cold intolerance were not statistically different between the 2 groups, pain in the affected fingers was more frequent in the amputation closure group. The average Disabilities of the Arm, Shoulder, and Hand score of the successful replantation group was statistically better. All patients in the successful replantation group were highly or fairly satisfied with the surgical results, whereas 14 patients in the amputation closure group were highly or fairly satisfied. The time spent in the hospital and the time off from work for the successful replantation group were longer. Successful replantation of single fingertip amputations can result in minimal pain, better functional outcome, better appearance, and higher patient satisfaction. We recommend attempting fingertip replantation not only to obtain the best appearance but also to gain better functional outcome. If the patient requests the simple surgery and earlier return to work amputation closure is an accepted method despite the disadvantage of digital shortening and the risk for a painful stump. Therapeutic, Level III.
Functionalization of single-walled carbon nanotubes regulates their effect on hemostasis
Sokolov, A. V.; Aseychev, A. V.; Kostevich, V. A.; Gusev, A. A.; Gusev, S. A.; Vlasova, I. I.
2011-04-01
Applications of single-walled carbon nanotubes (SWNTs) in medical field imply the use of drug-coupled carbon nanotubes as well as carbon nanotubes functionalized with different chemical groups that change nanotube surface properties and interactions between nanotubes and cells. Covalent attachment of polyethylene glycol (PEG) to carboxylated single-walled carbon nanotubes (c-SWNT) is known to prevent the nanotubes from interaction with macrophages. Here we characterized nanotube's ability to stimulate coagulation processes in platelet-poor plasma (PPP), and evaluated the effect of SWNTs on platelet aggregation in platelet-rich plasma (PRP). Our study showed that PEG-SWNT did not affect the rate of clotting in PPP, while c-SWNT shortened the clot formation time five times compared to the control PPP. Since c-SWNT failed to accelerate coagulation in plasma lacking coagulation factor XI, it may be suggested that c-SWNT affects the contact activation pathway. In PRP, platelets responded to both SWNT types with irreversible aggregation, as evidenced by changes in the aggregate mean radius. However, the rate of aggregation induced by c-SWNT was two times higher than it was with PEG-SWNT. Cytological analysis also showed that c-SWNT was two times more efficient when compared to PEG-SWNT in aggregating platelets in PRP. Taken together, our results show that functionalization of nanoparticles can diminish their negative influence on blood cells. As seen from our data, modification of c-SWNT with PEG, when only a one percent of carbon atoms is bound to polymer (70 wt %), decreased the nanotube-induced coagulation in PRP and repelled the accelerating effect on the coagulation in PPP. Thus, when functionalized SWNTs are used for administration into bloodstream of laboratory animals, their possible pro-coagulant and pro-aggregating properties must be taken into account.
Linear systems optimal and robust control
Sinha, Alok
2007-01-01
Introduction Overview Contents of the Book State Space Description of a Linear System Transfer Function of a Single Input/Single Output (SISO) System State Space Realizations of a SISO System SISO Transfer Function from a State Space Realization Solution of State Space Equations Observability and Controllability of a SISO System Some Important Similarity Transformations Simultaneous Controllability and Observability Multiinput/Multioutput (MIMO) Systems State Space Realizations of a Transfer Function Matrix Controllability and Observability of a MIMO System Matrix-Fraction Description (MFD) MFD of a Transfer Function Matrix for the Minimal Order of a State Space Realization Controller Form Realization from a Right MFD Poles and Zeros of a MIMO Transfer Function Matrix Stability Analysis State Feedback Control and Optimization State Variable Feedback for a Single Input System Computation of State Feedback Gain Matrix for a Multiinput System State Feedback Gain Matrix for a Multi...
Directory of Open Access Journals (Sweden)
Mohamed Ramadan
2016-06-01
Full Text Available In this paper, a rational Chebyshev collocation method is presented to solve high-order linear Fredholm integro-differential equations with variable coefficients under the mixed conditions in terms of rational Chebyshev functions by two proposed schemes. The proposed method converts the equation and conditions to matrix equations, by means of collocation points on the semi–infinite interval, which corresponding to systems of linear algebraic equations with rational Chebyshev coefficients. Thus, by solving the matrix equation, rational Chebyshev coefficients are obtained and hence the approximate solution is expressed in terms of rational Chebyshev functions. Numerical examples are given to illustrate the validity and applicability of the method. The proposed method is numerically compared with others existing methods as well as the exact solutions where it maintains better accuracy.
Ahmadi, Homa; Ramezani, Mohammad; Yazdian-Robati, Rezvan; Behnam, Behzad; Razavi Azarkhiavi, Kamal; Hashem Nia, Azadeh; Mokhtarzadeh, Ahad; Matbou Riahi, Maryam; Razavi, Bibi Marjan; Abnous, Khalil
2017-09-25
Recently carbon nanotubes (CNTs) showed promising potentials in different biomedical applications but their safe use in humans and probable toxicities are still challenging. The aim of this study was to determine the acute toxicity of functionalized single walled carbon nanotubes (SWCNTs). In this project, PEGylated and Tween functionalized SWCNTs were prepared. BALB/c mice were randomly divided into nine groups, including PEGylated SWCNTs (75,150μg/mouse) and PEG, Tween80 suspended SWCNTs, Tween 80 and a control group (intact mice). One or 7 days after intravenous injection, the mice were killed and serum and livers were collected. The oxidative stress markers, biochemical and histopathological changes were studied. Subsequently, proteomics approach was used to investigate the alterations of protein expression profiles in the liver. Results showed that there were not any significant differences in malondealdehyde (MDA), glutathione (GSH) levels and biochemical enzymes (ALT and AST) between groups, while the histopathological observations of livers showed some injuries. The results of proteomics analysis revealed indolethylamine N-Methyltransferase (INMT), glycine N-Methyltransferase (GNMT), selenium binding protein (Selenbp), thioredoxin peroxidase (TPx), TNF receptor associated protein 1(Trap1), peroxiredoxin-6 (Prdx6), electron transport flavoprotein (Etf-α), regucalcin (Rgn) and ATP5b proteins were differentially expressed in functionalized SWCNTs groups. Western blot analyses confirmed that the changes in Prdx6 were consistent with 2-DE gel analysis. In summary, acute toxicological study on two functionalized SWCNTs did not show any significant toxicity at selected doses. Proteomics analysis also showed that following exposure to functionalized SWCNTs, the expression of some proteins with antioxidant activity and detoxifying properties were increased in liver tissue. Copyright © 2017 Elsevier B.V. All rights reserved.
Czech Academy of Sciences Publication Activity Database
Duarte-Mermoud, M.A.; Ordonez-Hurtado, R.H.; Zagalak, Petr
2012-01-01
Roč. 43, č. 11 (2012), s. 2015-2029 ISSN 0020-7721 R&D Projects: GA ČR(CZ) GAP103/12/2431 Institutional support: RVO:67985556 Keywords : Switched linear systems * Lyapunov function * particle swarm optimization Subject RIV: BC - Control Systems Theory Impact factor: 1.305, year: 2012 http://library.utia.cas.cz/separaty/2012/AS/zagalak-0382169.pdf
Loparo, Joseph J.; Kulczyk, Arkadiusz W.; Richardson, Charles C.; Oijen, Antoine M. van
2011-01-01
A complete understanding of the molecular mechanisms underlying the functioning of large, multiprotein complexes requires experimental tools capable of simultaneously visualizing molecular architecture and enzymatic activity in real time. We developed a novel single-molecule assay that combines the
International Nuclear Information System (INIS)
Lowe, S.S.
1993-01-01
The mission of the Tank Waste Remediation System (TWRS) Program is to store, treat, and immobilize highly radioactive Hanford waste in an environmentally sound, safe, and cost-effective manner. The scope of the TWRS Program includes project and program activities for receiving, storing, maintaining, treating, and disposing onsite, or packaging for offsite disposal, all Hanford tank waste. Hanford tank waste includes the contents of 149 single-shell tanks (SSTs) and 28 double-shell tanks (DSTs), plus any new waste added to these facilities, and all encapsulated cesium and strontium stored onsite and returned from offsite users. A key element of the TWRS Program is retrieval of the waste in the SSTs. The waste stored in these underground tanks must be removed in order to minimize environmental, safety, and health risks associated with continuing waste storage. Subsurface barriers are being considered as a means to mitigate the effects of tank leaks including those occurring during SST waste retrieval. The functions to be performed by subsurface barriers based on their role in retrieving waste from the SSTs are described, and the requirements which constrain their application are identified. These functions and requirements together define the functional baseline for subsurface barriers
Electrical Resistivity of Pristine and Functional Single-Wall Carbon Nanotubes
Directory of Open Access Journals (Sweden)
Yijiang Lu
2013-01-01
Full Text Available The resistance of several pristine and functional single-wall carbon nanotubes (SWNTs deposited and dried on interdigitated electrode (IDE chips was investigated to better understand how functional groups influence their resistivity. Without the external electrical field, the resistance was generally increased for the sulfonated and fluorinated SWNTs but not for COOH-SWNTs. With a 3 V electric field applied during depositing, while no change in resistance was found for the purified pristine SWNTs, fluorinated SWNTs, COOH SWNTs, and Ni-SWNTs, a significant decrease in resistance was observed in sulfonated SWNTs and unpurified pristine SWNTs, which could be due to the alignment of SWNTs in an electric field. The alignment of the sulfonated SWNTs is most likely due to the charge of the sulfate functional group. It is interesting to note that the alignment was found in the unpurified pristine SWNTs but not in the purified pristine ones which have lessened resistivity. The lower resistivity in the purified pristine SWNTs may be due to the smaller number (<5% of impurities. The significance of this research is that hydrophilic COOH-SWNTs could be a better candidate than the hydrophobic pristine SWNTs for being used in many applications, especially in polymer nanocomposites.
Menamparambath, Mini Mol
2014-06-23
A difference in work function plays a key role in charge transfer between two materials. Inorganic electrides provide a unique opportunity for electron transfer since interstitial anionic electrons result in a very low work function of 2.4-2.6 eV. Here we investigated charge transfer between two different types of electrides, [Ca2N]+·e- and [Ca 24Al28O64]4+·4e-, and single-walled carbon nanotubes (SWNTs) with a work function of 4.73-5.05 eV. [Ca2N]+·e- with open 2-dimensional electron layers was more effective in donating electrons to SWNTs than closed cage structured [Ca24Al28O64] 4+·4e- due to the higher electron concentration (1.3 × 1022 cm-3) and mobility (∼200 cm 2 V-1 s-1 at RT). A non-covalent conjugation enhanced near-infrared fluorescence of SWNTs as high as 52%. The field emission current density of electride-SWNT-silver paste dramatically increased by a factor of 46000 (14.8 mA cm-2) at 2 V μm-1 (3.5 wt% [Ca2N]+·e-) with a turn-on voltage of 0.85 V μm-1. This journal is © the Partner Organisations 2014.
Linearly constrained minimax optimization
DEFF Research Database (Denmark)
Madsen, Kaj; Schjær-Jacobsen, Hans
1978-01-01
We present an algorithm for nonlinear minimax optimization subject to linear equality and inequality constraints which requires first order partial derivatives. The algorithm is based on successive linear approximations to the functions defining the problem. The resulting linear subproblems...... are solved in the minimax sense subject to the linear constraints. This ensures a feasible-point algorithm. Further, we introduce local bounds on the solutions of the linear subproblems, the bounds being adjusted automatically, depending on the quality of the linear approximations. It is proved...... that the algorithm will always converge to the set of stationary points of the problem, a stationary point being defined in terms of the generalized gradients of the minimax objective function. It is further proved that, under mild regularity conditions, the algorithm is identical to a quadratically convergent...
Exploring kinetic energy as a new marker of cardiac function in the single ventricle circulation.
Wong, James; Chabiniok, Radomir; Tibby, Shane M; Pushparajah, Kuberan; Sammut, Eva; Celermajer, David S; Giese, Daniel; Hussain, Tarique; Greil, Gerald F; Schaeffter, Tobias; Razavi, Reza
2018-01-25
Ventricular volumetric ejection fraction (VV EF) is often normal in patients with single ventricle circulations despite them experiencing symptoms related to circulatory failure. We sought to determine if kinetic energy (KE) could be a better marker of ventricular performance. KE was prospectively quantified using 4D flow MRI in 41 patients with a single ventricle circulation (aged 0.5 - 28 years) and compared to 43 healthy volunteers (aged 1.5 - 62 years) and 14 patients with left ventricular (LV) dysfunction (aged 28 - 79 years). Intraventricular end-diastolic blood was tracked through systole and divided into ejected and residual blood components. Two ejection fraction (EF) metrics were devised based on the KE of the ejected component over the total of both the ejected and residual components using: (1) instantaneous peak KE to assess KE EF or; (2) summating individual peak particle energy (PE) to assess PE EF. KE EF and PE EF had a smaller range than VV EF in healthy subjects (97.9 {plus minus} 0.8% vs. 97.3 {plus minus} 0.8% vs. 60.1 {plus minus} 5.2%). LV dysfunction caused a fall in KE EF (p =0.01) and PE EF (p =0.0001). VV EF in healthy LVs and single ventricle hearts was equivalent however KE EF and PE EF were lower (p <0.001) with a wider range indicating a spectrum of severity. Those reporting the greatest symptomatic impairment (NYHA II) had lower PE EF than asymptomatic subjects (p =0.0067). KE metrics are markers of healthy cardiac function. PE EF may be useful in grading dysfunction.
Energy Technology Data Exchange (ETDEWEB)
Mason, Olivia U.; Hazen, Terry C.; Borglin, Sharon; Chain, Patrick S. G.; Dubinsky, Eric A.; Fortney, Julian L.; Han, James; Holman, Hoi-Ying N.; Hultman, Jenni; Lamendella, Regina; Mackelprang, Rachel; Malfatti, Stephanie; Tom, Lauren M.; Tringe, Susannah G.; Woyke, Tanja; Zhou, Jizhong; Rubin, Edward M.; Jansson, Janet K.
2012-06-12
The Deepwater Horizon oil spill in the Gulf of Mexico resulted in a deep-sea hydrocarbon plume that caused a shift in the indigenous microbial community composition with unknown ecological consequences. Early in the spill history, a bloom of uncultured, thus uncharacterized, members of the Oceanospirillales was previously detected, but their role in oil disposition was unknown. Here our aim was to determine the functional role of the Oceanospirillales and other active members of the indigenous microbial community using deep sequencing of community DNA and RNA, as well as single-cell genomics. Shotgun metagenomic and metatranscriptomic sequencing revealed that genes for motility, chemotaxis and aliphatic hydrocarbon degradation were significantly enriched and expressed in the hydrocarbon plume samples compared with uncontaminated seawater collected from plume depth. In contrast, although genes coding for degradation of more recalcitrant compounds, such as benzene, toluene, ethylbenzene, total xylenes and polycyclic aromatic hydrocarbons, were identified in the metagenomes, they were expressed at low levels, or not at all based on analysis of the metatranscriptomes. Isolation and sequencing of two Oceanospirillales single cells revealed that both cells possessed genes coding for n-alkane and cycloalkane degradation. Specifically, the near-complete pathway for cyclohexane oxidation in the Oceanospirillales single cells was elucidated and supported by both metagenome and metatranscriptome data. The draft genome also included genes for chemotaxis, motility and nutrient acquisition strategies that were also identified in the metagenomes and metatranscriptomes. These data point towards a rapid response of members of the Oceanospirillales to aliphatic hydrocarbons in the deep sea.
Delaney, C; McGrane, J; Cummings, E; Morris, D W; Tropea, D; Gill, M; Corvin, A; Donohoe, G
2012-09-01
Suicide is the leading cause of death in schizophrenia. An association between suicidal behavior and both higher and lower cognitive ability in schizophrenia has been reported. To clarify this relationship, we investigated whether the relationship between suicidality and neurocognition varied according to differences in suicidal ideation and behavior. Three hundred and ten patients with DSM-IV diagnoses of schizophrenia or schizoaffective disorder were categorized based on patient and staff interviews as either non-suicide attempters, non-attempters expressing suicidal ideation, single suicide attempters, or multiple suicide attempters. These groups were compared on a neuropsychological battery examining current general cognitive ability, episodic and working memory, and attentional control. Neuropsychological performance in those with a history of suicidal ideation (n=63), and those who had made one suicide attempt (n=48) was comparable. Together, these groups outperformed patients with no history of either suicidal behavior or ideation (n=172) on measures of IQ, episodic memory and working memory. Only differences in global cognition remained significant after controlling for between-group differences in depressive symptoms. Those who had either expressed suicidal ideation and/or made a single suicide attempt demonstrated trend level advantages in neuropsychological tests over those that had made multiple suicide attempts. These findings support earlier evidence of an association between suicidality and neurocognitive ability in schizophrenia. Specifically, these data suggest that patients who have contemplated suicide or made a single suicide attempt have better cognitive functioning than those who have not. Suicidality in multiple attempters, who do not perform better in neurocognitive tests than those who have neither contemplated nor attempted suicide, is likely to be influenced by factors other than neurocognitive ability. Copyright © 2012 Elsevier B.V. All
International Nuclear Information System (INIS)
Suwono.
1978-01-01
A linear gate providing a variable gate duration from 0,40μsec to 4μsec was developed. The electronic circuity consists of a linear circuit and an enable circuit. The input signal can be either unipolar or bipolar. If the input signal is bipolar, the negative portion will be filtered. The operation of the linear gate is controlled by the application of a positive enable pulse. (author)
Non-covalent functionalization of single wall carbon nanotubes and graphene by a conjugated polymer
Jiwuer, Jilili
2014-07-07
We report first-principles calculations on the binding of poly[(9,9-bis-(6-bromohexylfluorene-2,7-diyl)-co-(benzene-1,4-diyl)] to a (8,0) single wall carbon nanotube (SWCNT) and to graphene. Considering different relative orientations of the subsystems, we find for the generalized gradient approximation a non-binding state, whereas the local density approximation predicts reasonable binding energies. The results coincide after inclusion of van der Waals corrections, which demonstrates a weak interaction between the polymer and SWCNT/graphene, mostly of van der Waals type. Accordingly, the density of states shows essentially no hybridization. The physisorption mechanism explains recent experimental observations and suggests that the conjugated polymer can be used for non-covalent functionalization.
A compact model for single material double work function gate MOSFET
Changyong, Zheng; Wei, Zhang; Tailong, Xu; Yuehua, Dai; Junning, Chen
2013-09-01
An analytical surface potential model for the single material double work function gate (SMDWG) MOSFET is developed based on the exact resultant solution of the two-dimensional Poisson equation. The model includes the effects of drain biases, gate oxide thickness, different combinations of S-gate and D-gate length and values of substrate doping concentration. More attention has been paid to seeking to explain the attributes of the SMDWG MOSFET, such as suppressing drain-induced barrier lowering (DIBL), accelerating carrier drift velocity and device speed. The model is verified by comparison to the simulated results using the device simulator MEDICI. The accuracy of the results obtained using our analytical model is verified using numerical simulations. The model not only offers the physical insight into device physics but also provides the basic designing guideline for the device.
DEFF Research Database (Denmark)
Staus, Dean P; Wingler, Laura M; Strachan, Ryan T
2014-01-01
. However, a monomeric single-domain antibody (nanobody) from the Camelid family was recently found to allosterically bind and stabilize an active conformation of the β2-adrenergic receptor (β2AR). Here, we set out to study the functional interaction of 18 related nanobodies with the β2AR to investigate...... their roles as novel tools for studying GPCR biology. Our studies revealed several sequence-related nanobody families with preferences for active (agonist-occupied) or inactive (antagonist-occupied) receptors. Flow cytometry analysis indicates that all nanobodies bind to epitopes displayed...... on the intracellular receptor surface; therefore, we transiently expressed them intracellularly as "intrabodies" to test their effects on β2AR-dependent signaling. Conformational specificity was preserved after intrabody conversion as demonstrated by the ability for the intracellularly expressed nanobodies...
Directory of Open Access Journals (Sweden)
Claudia Ehlers
2002-01-01
Full Text Available The mesophilic methanogenic archaeon Methanosarcina mazei strain Gö1 is able to utilize molecular nitrogen (N2 as its sole nitrogen source. We have identified and characterized a single nitrogen fixation (nif gene cluster in M. mazei Gö1 with an approximate length of 9 kbp. Sequence analysis revealed seven genes with sequence similarities to nifH, nifI1, nifI2, nifD, nifK, nifE and nifN, similar to other diazotrophic methanogens and certain bacteria such as Clostridium acetobutylicum, with the two glnB-like genes (nifI1 and nifI2 located between nifH and nifD. Phylogenetic analysis of deduced amino acid sequences for the nitrogenase structural genes of M. mazei Gö1 showed that they are most closely related to Methanosarcina barkeri nif2 genes, and also closely resemble those for the corresponding nif products of the gram-positive bacterium C. acetobutylicum. Northern blot analysis and reverse transcription PCR analysis demonstrated that the M. mazei nif genes constitute an operon transcribed only under nitrogen starvation as a single 8 kb transcript. Sequence analysis revealed a palindromic sequence at the transcriptional start site in front of the M. mazei nifH gene, which may have a function in transcriptional regulation of the nif operon.
Fourier transforms of single-particle wave functions in cylindrical coordinates
International Nuclear Information System (INIS)
Rizea, M.; Carjan, N.
2016-01-01
A formalism and the corresponding numerical procedures that calculate the Fourier transform of a single-particle wave function defined on a grid of cylindrical (ρ, z) coordinates is presented. Single-particle states in spherical and deformed nuclei have been chosen in view of future applications in the field of nuclear reactions. Bidimensional plots of the probability that the nucleon's momentum has a given value K = √(k ρ 2 +k z 2 ) are produced and from them the K -distributions are deduced. Three potentials have been investigated: (a) a sharp surface spherical well (i.e., of constant depth), (b) a spherical Woods-Saxon potential (i.e., diffuse surface) and (c) a deformed potential of Woods-Saxon type. In the first case the momenta are as well defined as allowed by the uncertainty principle. Depending on the state, their distributions have up to three separated peaks as a consequence of the up to three circular ridges of the bidimensional probabilities plots. In the second case the diffuseness allows very low momenta to be always populated thus creating tails towards the origin (K = 0). The peaks are still present but not well separated. In the third case the deformation transforms the above mentioned circular ridges into ellipses thus spreading the K-values along them. As a consequence the K-distributions have only one broad peak. (orig.)
Trojnarska, Olga; Ciepłucha, Aleksandra
2011-01-01
Forty years ago, Fontan and Baudet performed the first life-saving operation on a patient with a functionally single ventricle. This multi-stage procedure established the connection between systemic venous circulation and pulmonary arteries. As a consequence, the pulmonary circulation is supplied in a passive way, whereas the single ventricle pumps the blood into the systemic circulation only. Over the years, the technique of creating the abovementioned vascular connections has undergone several modifications. Due to the fundamental non-physiological hemodynamic relations between arterial pulmonary and systemic venous pressures, numerous complications can be observed in these patients including: supraventricular arrhythmias, thromboemboli, hepatic dysfunction, protein-losing enteropathy, heart failure, worsening cyanosis, systemic venous collateralization, and pulmonary arteriovenous malformations, as well as connective tissue lesions in bronchi. Although based on an ingenious concept, the operation remains of a palliative character. Occasionally, heart transplantation is the ultimate resolution. Pharmacological therapy, and surgical conversion, often appear to be ineffective. However, this procedure has enabled many patients to reach adulthood and enjoy their lives to the full. This fact poses a great challenge for cardiologists wishing to become more knowledgeable and experienced as regards such patients, if we are not to waste such fabulous surgical achievements.
International Nuclear Information System (INIS)
Cannell, G.R.
2009-01-01
The Department of Energy, Richland Operations (DOE-RL) recently restructured its Hanford work scope, awarding two new contracts over the past several months for a total of three contracts to manage the sites cleanup efforts. DOE-RL met with key contractor personnel prior to and during contract transition to ensure site welding activities had appropriate oversight and maintained code compliance. The transition also provided an opportunity to establish a single site-wide function that would provide welding and materials engineering services to the Hanford site contractors: CH2M HILL Plateau Remediation Company (CHPRC); Mission Support Alliance (MSA); Washington River Protection Solutions (WRPS); and Washington Closure Hanford (WCH). Over the years, multiple and separate welding programs (amongst the several contractors) existed at the Hanford site leading to inefficiencies resulting from duplication of administrative efforts, maintenance of welding procedures, welder performance certifications, etc. The new, single program eliminates these inefficiencies. The new program, co-managed by two of the sites' new contractors, the CHPRC ('owner' of the program and responsible for construction welding services) and the MSA (provides maintenance welding services), provides more than just the traditional construction and maintenance welding services. Also provided, are welding engineering, specialty welding development/qualification for the closure of radioactive materials containers and materials evaluation/failure analysis. The following describes the new Hanford site welding program.
Cao, Xiao-Yu; Zi, Hong; Zhang, Wei; Lu, Hua; Pei, Jian
2005-04-29
[structure: see text] A synthetic strategy promising the establishment of a new star-shaped and linear polycyclic aromatic hydrocarbons (PAHs) family with distinct molecular topologies has been developed. The Sonogashira reaction between the iodide derivatives 2a-e and phenylacetylene catalyzed with Pd(0) affords 3a-e in high yields. The Diels-Alder and decarbonylation reactions between 3a-e and tetraphenylcyclophentadiene following the oxidation by FeCl(3) produce the star-shaped and linear PAHs 5a-e containing a five-membered ring. The structural analysis and the optical properties of all new compounds are performed by a combination of MALDI-TOF mass spectrometry, UV-vis, and fluorescence spectrometry. The electronic and photophysical properties are studied by orthogonal comparisons of the absorption and fluorescence spectra in THF solutions, which not only give insight into the interactions among aromatic submoieties in each molecule and the effects of meta-conjugation and para-conjugation on electronic delocalization, but also indicate effective conjugation length variations from oligophenylacetylenes 3a-e to oligophenylene dendrimers 4a-e and PAHs 5a-e. The star-shaped 5c exhibits the highest aggregation in excited states compared with the other four hexa-peri-hexabenzocoronene (HBC) derivatives.
Directory of Open Access Journals (Sweden)
Nicolas Ginet
Full Text Available Enzymes are versatile catalysts in laboratories and on an industrial scale; improving their immobilization would be beneficial to broadening their applicability and ensuring their (reuse. Lipid-coated nano-magnets produced by magnetotactic bacteria are suitable for a universally applicable single-step method of enzyme immobilization. By genetically functionalizing the membrane surrounding these magnetite particles with a phosphohydrolase, we engineered an easy-to-purify, robust and recyclable biocatalyst to degrade ethyl-paraoxon, a commonly used pesticide. For this, we genetically fused the opd gene from Flavobacterium sp. ATCC 27551 encoding a paraoxonase to mamC, an abundant protein of the magnetosome membrane in Magnetospirillum magneticum AMB-1. The MamC protein acts as an anchor for the paraoxonase to the magnetosome surface, thus producing magnetic nanoparticles displaying phosphohydrolase activity. Magnetosomes functionalized with Opd were easily recovered from genetically modified AMB-1 cells: after cellular disruption with a French press, the magnetic nanoparticles are purified using a commercially available magnetic separation system. The catalytic properties of the immobilized Opd were measured on ethyl-paraoxon hydrolysis: they are comparable with the purified enzyme, with K(m (and k(cat values of 58 µM (and 178 s(-1 and 43 µM (and 314 s(-1 for the immobilized and purified enzyme respectively. The Opd, a metalloenzyme requiring a zinc cofactor, is thus properly matured in AMB-1. The recycling of the functionalized magnetosomes was investigated and their catalytic activity proved to be stable over repeated use for pesticide degradation. In this study, we demonstrate the easy production of functionalized magnetic nanoparticles with suitably genetically modified magnetotactic bacteria that are efficient as a reusable nanobiocatalyst for pesticides bioremediation in contaminated effluents.
Linearization Method and Linear Complexity
Tanaka, Hidema
We focus on the relationship between the linearization method and linear complexity and show that the linearization method is another effective technique for calculating linear complexity. We analyze its effectiveness by comparing with the logic circuit method. We compare the relevant conditions and necessary computational cost with those of the Berlekamp-Massey algorithm and the Games-Chan algorithm. The significant property of a linearization method is that it needs no output sequence from a pseudo-random number generator (PRNG) because it calculates linear complexity using the algebraic expression of its algorithm. When a PRNG has n [bit] stages (registers or internal states), the necessary computational cost is smaller than O(2n). On the other hand, the Berlekamp-Massey algorithm needs O(N2) where N(≅2n) denotes period. Since existing methods calculate using the output sequence, an initial value of PRNG influences a resultant value of linear complexity. Therefore, a linear complexity is generally given as an estimate value. On the other hand, a linearization method calculates from an algorithm of PRNG, it can determine the lower bound of linear complexity.
Ghelawi, M. A.; Moore, J. S.; Bisby, R. H.; Dodd, N. J. F.
2001-01-01
Food spoilage is caused by infestation by insects, contamination by bacteria and fungi and by deterioration by enzymes. In the third world, it has been estimated that 25% of agricultural products are lost before they reach the market. One way to decrease such losses is by treatment with ionising radiation and maximum permitted doses have been established for treatment of a wide variety of foods. For dates this dose is 2.0 kGy. Detection of irradiated foods is now essential and here we have used ESR to detect and estimate the dose received by a single date. The ESR spectrum of unirradiated date stone contains a single line g=2.0045 (signal A). Irradiation up to 2.0 kGy induces radical formation with g=1.9895, g=2.0159 (signal C) and g=1.9984 (signal B) high field. The lines with g=1.9895 and 2.0159 are readily detected and stable at room temperature for at least 27 months for samples irradiated up to this dose. The yield of the radicals resulting in these lines increase linearly up to a dose of 5.0 kGy as is evidenced by the linear increase in their intensity. In blind trials of 21 unirradiated and irradiated dates we are able to identify with 100% accuracy an irradiated sample and to estimate the dose to which the sample was irradiated to within ˜0.5 kGy.
1975-07-01
The describing function method of analysis is applied to investigate the influence of parametric variations on wheelset critical velocity. In addition, the relationship between the amplitude of sustained lateral oscillations and critical speed is der...
Dipole induced conductance modulation in chromophore-functionalized single-walled carbon nanotubes
Zhao, Yuanchun; Huang, Changshui; Kim, Myungwoong; Gopalan, Padma; Eriksson, Mark
2013-03-01
Single-walled carbon nanotubes (SWNTs) are highly sensitive to local electrostatic environments, making SWNT field-effect transistors (FETs) of interest for a number of sensor applications and optoelectronic devices. Here we demonstrate a direct correlation between the conduction of SWNTs and their surrounding dipolar environments. We use azobenzene-based dipolar chromophores, Disperse Red 1 (DR1) and its derivatives to functionalize the sidewalls of SWNTs. The chromophores are coupled with a pyrenebutyric group for realizing noncovalent attachment and to attempt to direct their dipole moments. The functionalizing chromophores produce a dipole field that shifts the threshold voltage (Vth) of the nanotube FET. Under light illumination, these molecules isomerize from the ground trans state to the excited cis state, leading to a decrease of their dipole moments. This dipole moment change acts as an additional gate, causing a shift in Vth. Our results provide a new insight into the photogating mechanisms of the nanotube-chromophore hybrid devices, and they reveal the possibility to modulate optoelectronic properties of nanotube-hybrid devices by designing chromophores with required photosensitive features.
Ingrosso, Chiara; Bianco, Giuseppe Valerio; Lopalco, Patrizia; Tamborra, Michela; Curri, Maria Lucia; Corcelli, Angela; Bruno, Giovanni; Agostiano, Angela; Siciliano, Pietro; Striccoli, Marinella
2012-10-21
In this work, single walled carbon nanotubes (SWNTs) have been chemically functionalized at their walls with a membrane protein, namely the mutated bacteriorhodopsin D96N, integrated in its native archaeal lipid membrane. The modification of the SWNT walls with the mutant has been carried out in different buffer solutions, at pH 5, 7.5 and 9, to investigate the anchoring process, the typical chemical and physical properties of the component materials being dependent on the pH. The SWNTs modified by interactions with bacteriorhodopsin membrane patches have been characterized by UV-vis steady state, Raman and attenuated total reflection Fourier transform infrared spectroscopy and by atomic force and transmission electron microscopy. The investigation shows that the membrane protein patches wrap the carbon walls by tight chemical interactions undergoing a conformational change; such chemical interactions increase the mechanical strength of the SWNTs and promote charge transfers which p-dope the nano-objects. The functionalization, as well as the SWNT doping, is favoured in acid and basic buffer conditions; such buffers make the nanotube walls more reactive, thus catalysing the anchoring of the membrane protein. The direct electron communication among the materials can be exploited for effectively interfacing the transport properties of carbon nanotubes with both molecular recognition capability and photoactivity of the cell membrane for sensing and photoconversion applications upon integration of the achieved hybrid materials in sensors or photovoltaic devices.
Density-Functional Theory description of transport in the single-electron transistor
Zawadzki, Krissia; Oliveira, Luiz N.
The Kondo effect governs the low-temperature transport properties of the single electron transistor (SET), a quantum dot bridging two electron gases. In the weak coupling limit, for odd dot occupation, the gate-potential profile of the conductance approaches a step, known as the Kondo plateau. The plateau and other SET properties being well understood on the basis of the Anderson model, more realistic (i. e., DFT) descriptions of the device are now desired. This poses a challenge, since the SET is strongly correlated. DFT computations that reproduce the conductance plateau have been reported, e. g., by, which rely on the exact functional provided by the Bethe-Ansatz solution for the Anderson model. Here, sticking to DFT tradition, we employ a functional derived from a homogeneous system: the parametrization of the Lieb-Wu solution for the Hubbard model due to. Our computations reproduce the plateau and yield other results in accurate agreement with the exact diagonalization of the Anderson Hamiltonian. The prospects for extensions to realistic descriptions of two-dimensional nanostructured devices will be discussed. Luiz N. Oliveira thanks CNPq (312658/2013-3) and Krissia Zawadzki thanks CNPq (140703/2014-4) for financial support.
Finite-dimensional linear algebra
Gockenbach, Mark S
2010-01-01
Some Problems Posed on Vector SpacesLinear equationsBest approximationDiagonalizationSummaryFields and Vector SpacesFields Vector spaces Subspaces Linear combinations and spanning sets Linear independence Basis and dimension Properties of bases Polynomial interpolation and the Lagrange basis Continuous piecewise polynomial functionsLinear OperatorsLinear operatorsMore properties of linear operatorsIsomorphic vector spaces Linear operator equations Existence and uniqueness of solutions The fundamental theorem; inverse operatorsGaussian elimination Newton's method Linear ordinary differential eq
Directory of Open Access Journals (Sweden)
Johannes Broedel
2017-02-01
Full Text Available We investigate single-valued polylogarithms in two complex variables, which are relevant for the seven-point remainder function in N=4 super-Yang–Mills theory in the multi-Regge regime. After constructing these two-dimensional polylogarithms, we determine the leading logarithmic approximation of the seven-point remainder function up to and including five loops.
Fitts, Robert H.; Romatowski, Janell G.; Widrick, Jeffrey J.; DeLaCruz, Lourdes
1999-01-01
Although it is well known that microgravity induces considerable limb muscle atrophy, little is known about how weightlessness alters cell function. In this study, we investigated how weightlessness altered the functional properties of single fast and slow striated muscle fibers. Physiological studies were carried out to test the hypothesis that microgravity causes fiber atrophy, a decreased peak force (Newtons), tension (Newtons/cross-sectional area) and power, an elevated peak rate of tension development (dp/dt), and an increased maximal shortening velocity (V(sub o)) in the slow type I fiber, while changes in the fast-twitch fiber are restricted to atrophy and a reduced peak force. For each fiber, we determined the peak force (P(sub o)), V(sub o), dp/dt, the force-velocity relationship, peak power, the power-force relationship, the force-pCa relationship, and fiber stiffness. Biochemical studies were carried out to assess the effects of weightlessness on the enzyme and substrate profile of the fast- and slow-twitch fibers. We predicted that microgravity would increase resting muscle glycogen and glycolytic metabolism in the slow fiber type, while the fast-twitch fiber enzyme profile would be unaltered. The increased muscle glycogen would in part result from an elevated hexokinase and glycogen synthase. The enzymes selected for study represent markers for mitochondrial function (citrate synthase and 0-hydroxyacyl-CoA dehydrogenase), glycolysis (Phosphofructokinase and lactate dehydrogenase), and fatty acid transport (Carnitine acetyl transferase). The substrates analyzed will include glycogen, lactate, adenosine triphosphate, and phosphocreatine.
Zeng, Shuai; Yang, Jing; Chung, Brian Hon-Yin; Lau, Yu Lung; Yang, Wanling
2014-06-10
Predicting the functional impact of amino acid substitutions (AAS) caused by nonsynonymous single nucleotide polymorphisms (nsSNPs) is becoming increasingly important as more and more novel variants are being discovered. Bioinformatics analysis is essential to predict potentially causal or contributing AAS to human diseases for further analysis, as for each genome, thousands of rare or private AAS exist and only a very small number of which are related to an underlying disease. Existing algorithms in this field still have high false prediction rate and novel development is needed to take full advantage of vast amount of genomic data. Here we report a novel algorithm that features two innovative changes: 1. making better use of sequence conservation information by grouping the homologous protein sequences into six blocks according to evolutionary distances to human and evaluating sequence conservation in each block independently, and 2. including as many such homologous sequences as possible in analyses. Random forests are used to evaluate sequence conservation in each block and to predict potential impact of an AAS on protein function. Testing of this algorithm on a comprehensive dataset showed significant improvement on prediction accuracy upon currently widely-used programs. The algorithm and a web-based application tool implementing it, EFIN (Evaluation of Functional Impact of Nonsynonymous SNPs) were made freely available (http://paed.hku.hk/efin/) to the public. Grouping homologous sequences into different blocks according to the evolutionary distance of the species to human and evaluating sequence conservation in each group independently significantly improved prediction accuracy. This approach may help us better understand the roles of genetic variants in human disease and health.
Directory of Open Access Journals (Sweden)
Thomas J Hoogeboom
Full Text Available BACKGROUND: Knee range of motion (KROM is associated with the ability to perform daily activities in people with knee OA. However, this association is weak, possibly through the use of linear analyses. Curvilinear associations appear much more relevant, as these allow the determination of relevant clinical thresholds in KROM. The goal of this study is to assess the curvilinear association between KROM and daily activities (self-reported and observed in people with knee osteoarthritis (OA. METHODS: Demographic, functional and KROM (flexion and extension data were collected from a convenience sample of people with knee OA awaiting total knee arthroplasty. Self-reported functioning was measured by use of the Knee Osteoarthritis Outcomes Scale and observed functioning with the timed up and go and six-minute walk test. The presence of curvilinear relationships between KROM and measures of functioning were tested by generalized additive modeling, piecewise regression modeling and receiver operated curves. RESULTS: Data from 110 participants (mean age ± standard deviation: 65 ± 9 and female: 54% with knee OA were evaluated. Statistical modeling did not reveal linear nor curvilinear associations between KROM and self-reported or observed measures of functioning; except for statistical significant associations between reduced knee flexion and major difficulties standing (p<=0.01. However, further modeling did not provide convincing evidence for relevant clinical associations and thresholds. CONCLUSIONS: No clinically relevant relationship between KROM and self-reported or observed measures of physical functioning could be established, indicating that the limitations in range of motion in the affected knee OA alone do not contribute to poorer functional performance.
Grötzinger, Stefan
2017-12-01
Enzymes, as nature’s catalysts, show remarkable abilities that can revolutionize the chemical, biotechnological, bioremediation, agricultural and pharmaceutical industries. However, the narrow range of stability of the majority of described biocatalysts limits their use for many applications. To overcome these restrictions, extremozymes derived from microorganisms thriving under harsh conditions can be used. Extremophiles living in high salinity are especially interesting as they operate at low water activity, which is similar to conditions used in standard chemical applications. Because only about 0.1 % of all microorganisms can be cultured, the traditional way of culture-based enzyme function determination needs to be overcome. The rise of high-throughput next-generation-sequencing technologies allows for deep insight into nature’s variety. Single amplified genomes (SAGs) specifically allow for whole genome assemblies from small sample volumes with low cell yields, as are typical for extreme environments. Although these technologies have been available for years, the expected boost in biotechnology has held off. One of the main reasons is the lack of reliable functional annotation of the genomic data, which is caused by the low amount (0.15 %) of experimentally described genes. Here, we present a novel annotation algorithm, designed to annotate the enzymatic function of genomes from microorganisms with low homologies to described microorganisms. The algorithm was established on SAGs from the extreme environment of selected hypersaline Red Sea brine pools with 4.3 M salinity and temperatures up to 68°C. Additionally, a novel consensus pattern for the identification of γ-carbonic anhydrases was created and applied in the algorithm. To verify the annotation, selected genes were expressed in the hypersaline expression system Halobacterium salinarum. This expression system was established and optimized in a continuously stirred tank reactor, leading to
Determination and shaping of the ion-velocity distribution function in a single-ended Q machine
DEFF Research Database (Denmark)
Andersen, S.A.; Jensen, Vagn Orla; Michelsen, Poul
1971-01-01
An electrostatic energy analyzer with a resolution better than 0.03 eV was constructed. This analyzer was used to determine the ion-velocity distribution function at different densities and plate temperatures in a single-ended Q machine. In all regions good agreement with theoretical predictions...... based on simple, physical pictures is obtained. It is shown that within certain limits the velocity distribution function can be shaped; double-humped distribution functions have been obtained. The technique used here is suggested as an accurate method for determination of plasma densities within 10......% in single-ended Q machines...
National Aeronautics and Space Administration — A radiation hard, single photon sensitive InGaAs avalanche photodiode (APD) receiver technology will be demonstrated useful for long range space based optical...
DEFF Research Database (Denmark)
Thomsen, Bo; Hansen, Mikkel Bo; Seidler, Peter
2012-01-01
. The absorption spectrum can in this formulation be seen as a matrix function of the characteristic VCC Jacobian response matrix. The asymmetric matrix version of the Lanczos method is used to generate a tridiagonal representation of the VCC response Jacobian. Solving the complex response equations...... in the relevant Lanczos space provides a method for calculating the VCC damped response functions and thereby subsequently the absorption spectra. The convergence behaviour of the algorithm is discussed theoretically and tested for different levels of completeness of the VCC expansion. Comparison is made...... with results from the recently reported [P. Seidler, M. B. Hansen, W. Györffy, D. Toffoli, and O. Christiansen, J. Chem. Phys. 132, 164105 (2010)] vibrational configuration interaction damped response function calculated using a symmetric Lanczos algorithm. Calculations of IR spectra of oxazole, cyclopropene...
Stoll, R R
1968-01-01
Linear Algebra is intended to be used as a text for a one-semester course in linear algebra at the undergraduate level. The treatment of the subject will be both useful to students of mathematics and those interested primarily in applications of the theory. The major prerequisite for mastering the material is the readiness of the student to reason abstractly. Specifically, this calls for an understanding of the fact that axioms are assumptions and that theorems are logical consequences of one or more axioms. Familiarity with calculus and linear differential equations is required for understand
International Nuclear Information System (INIS)
Prunele, E de
2003-01-01
Conditions for bound states for a periodic linear chain are given within the framework of an exactly solvable non-relativistic quantum-mechanical model in three-dimensional space. These conditions express the strength parameter in terms of the distance between two consecutive centres of the chain, and of the range interaction parameter. This expression can be formulated in terms of polylogarithm functions, and, in some particular cases, in terms of the Riemann zeta function. An interesting mathematical result is that these expressions also correspond to the spectra of Toeplitz complex symmetric operators. The non-trivial zeros of the Riemann zeta function are interpreted as multiple points, at the origin, of the spectra of these Toeplitz operators
Valles, J; Artigas, R; Bertolotti, M; Crea, A; Muller, F; Paredes, I; Capriati, A
2006-06-01
Dexketoprofen trometamol, a high water-soluble salt of the active enantiomer of rac-ketoprofen, is a nonsteroidal antiinflammatory drug (NSAID) used for pain relief. This study compared the pharmacokinetics of dexketoprofen in patients with impaired liver function and normal subjects following single and repeated oral dosing. Subjects with normal liver function (n = 6) and with Child-Pugh A (n = 7) or Child-Pugh B (n = 5) hepatic impairment scores completed this open-label and parallel study. They received 25 mg dexketoprofen (equivalent to 37 mg of its tromethamine salt) as a single (day 1) and a 3-day repeated dose (1 dose every 8 hours for a total of 10 doses). Dexketoprofen concentrations were determined in plasma and urine by reverse-phase high performance liquid chromatography (HPLC). Model-independent pharmacokinetic parameters were obtained. All subjects completed the study. No serious adverse events were recorded. Following the single dose, mean (+/- SEM) Cmax were 3027.7 +/- 429.3 ng/ml (healthy subjects), 2856.3 +/- 340.3 ng/ml (Child-Pugh A) and 1937.2 +/- 328.0 ng/ml (Child-Pugh B). Median tmax were 0.49 h (0.33-0.68) h, 0.50 h (0.33-0.67) h and 0.67 h (0.33-1.50) h. AUC0-x averaged 3778.0 +/- 439.0 ng.h/ml, 4890.4 +/- 539.1 ng.h/ml and 3985.0 +/- 712.0 ng.h/ml. Mean CL/F were 101.1 +/- 11.3 ml/h/kg, 73.3 +/- 9.9 ml/h/kg and 88.8 +/- 15.5 ml/h/kg and V/F averaged 0.192 +/- 0.018 l/kg, 0.162 +/- 0.006 l/kg and 0.214 +/- 0.044 l/kg. Following the repeated administration, similar results were obtained showing no drug accumulation. As related to the administered dose, median excretions of unchanged and conjugated dexketoprofen in urine were 2.1% and 67.1% in healthy subjects, 2.8% and 60.9% in Child-Pugh A subjects and 4.4% and 47.7% in Child-Pugh B volunteers. A trend towards a reduced urinary excretion of conjugated dexketoprofen in hepatic patients, more evident in the Child-Pugh B than in the Child-Pugh A groups, was observed when compared with healthy
Guliyev, Namig; Ismailov, Vugar
2016-01-01
The possibility of approximating a continuous function on a compact subset of the real line by a feedforward single hidden layer neural network with a sigmoidal activation function has been studied in many papers. Such networks can approximate an arbitrary continuous function provided that an unlimited number of neurons in a hidden layer is permitted. In this paper, we consider constructive approximation on any finite interval of $\\mathbb{R}$ by neural networks with only one neuron in the hid...
Pastore, Mariachiara; Assfeld, Xavier; Mosconi, Edoardo; Monari, Antonio; Etienne, Thibaud
2017-07-14
We report a theoretical study on the analysis of the relaxed one-particle difference density matrix characterizing the passage from the ground to the excited state of a molecular system, as obtained from time-dependent density functional theory. In particular, this work aims at using the physics contained in the so-called Z-vector, which differentiates between unrelaxed and relaxed difference density matrices to analyze excited states' nature. For this purpose, we introduce novel quantum-mechanical quantities, based on the detachment/attachment methodology, for analysing the Z-vector transformation for different molecules and density functional theory functionals. A derivation pathway of these novel descriptors is reported, involving a numerical integration to be performed in the Euclidean space on the density functions. This topological analysis is then applied to two sets of chromophores, and the correlation between the level of theory and the behavior of our descriptors is properly rationalized. In particular, the effect of range-separation on the relaxation amplitude is discussed. The relaxation term is finally shown to be system-specific (for a given level of theory) and independent of the number of electrons (i.e., the relaxation amplitude is not simply the result of a collective phenomenon).
Directory of Open Access Journals (Sweden)
Masanori Naito, MD, PhD
2017-05-01
Conclusion: Sutureless functional end-to-end anastomosis using the Endo GIA™ Reinforced appears to be safe, efficacious, and straightforward. Reinforcement of the crotch site with a bioabsorbable polyglycolic acid sheet appears to mitigate conventional problems with crotch-site vulnerability.
Czech Academy of Sciences Publication Activity Database
Šremr, Jiří
2007-01-01
Roč. 132, č. 3 (2007), s. 263-295 ISSN 0862-7959 R&D Projects: GA ČR GP201/04/P183 Institutional research plan: CEZ:AV0Z10190503 Keywords : system of functional differential equations with monotone operators * initial value problem * unique solvability Subject RIV: BA - General Mathematics
Sifi, A.; Klein, R. S.; Maillard, A.; Kugel, G. E.; Péter, A.; Polgár, K.
2003-10-01
We present absolute measurements of the effective non-linear optical coefficients deff of cesium lithium borate crystals (CsLiB 6O 10, CLBO) by second harmonic generation using a continuous Nd-YAG laser source. The experiments were carried out at room temperature, on crystals cut perpendicular to type I or type II phase matching directions, with two different crystal lengths along the propagation direction. The d36 and d14 non-linear coefficients involved in deff developments are deduced and are shown to be equal as it is predicted by the Kleinman symmetry. Two different compositions prepared by the Czochralski technique from melt with compositions of 1:1:6 and 1:1:5.5 molar ratios of Cs 2O, Li 2O and B 2O 3 are comparatively studied.
Non linear response of plasma ions in linear electrostatic waves
International Nuclear Information System (INIS)
Anderegg, F.; Skiff, F.; Paris, P.J.; Good, T.N.; Tran, M.Q.; Rynn, N.; Stern, R.
1988-11-01
We present experiments which test the applicability of the Hamiltonian single particle theory to wave-particle interactions. This theory describes the chaotic acceleration of plasmas ions by electrostatic waves. The Hamiltonian description gives predictions about the threshold, fast time scale, details of the distribution function and conservation of three integrals of the motion while some of the integrals have been broken by the overlap of resonances. Both electrostatic ion cyclotron and Bernstein waves are launched from antennae at the plasma boundary. Ion motions are observed by Laser Induced Fluorescence (LIF) and optical tagging. The linear response of the ion to the wave is distinguished from the chaotic response. Several predictions of the single particle theory are observed in the experiments. In addition, evidence of self-consistent effects have been observed. (author) 14 figs., 22 refs
Directory of Open Access Journals (Sweden)
Fogliata Antonella
2011-09-01
Full Text Available Abstract Background A new-generation low-energy linear accelerator (UNIQUE was introduced in the clinical arena during 2009 by Varian Medical Systems. The world's first UNIQUE was installed at Oncology Institute of Southern Switzerland and put into clinical operation in June 2010. The aim of the present contribution was to report experience about its commissioning and first year results from clinical operation. Methods Commissioning data, beam characteristics and the modeling into the treatment planning system were summarized. Imaging system of UNIQUE included a 2D-2D matching capability and tests were performed to identify system repositioning capability. Finally, since the system is capable of delivering volumetric modulated arc therapy with RapidArc, a summary of the tests performed for such modality to assess its performance in preclinical settings and during clinical usage was included. Results Isocenter virtual diameter was measured as less than 0.2 mm. Observed accuracy of isocenter determination and repositioning for 2D-2D matching procedures in image guidance was Conclusions The results of the commissioning tests and of the first period of clinical operation, resulted meeting specifications and having good margins respect to tolerances. UNIQUE was put into operation for all delivery techniques; in particular, as shown by the pre-treatment quality assurance results, it enabled accurate and safe delivery of RapidArc plans.
Awad, E M
1999-01-01
In this work, we have studied the effect of the radiation damage caused by the incident particles on the activation energy of etching for CR-39 samples. The damage produced by the incident particle is expressed in terms of the linear energy transfer (LET). CR-39 samples from American Acrylic were irradiated to three different LET particles. These are N (LET sub 2 sub 0 sub 0 = 20 KeV/mu m) as a light particle, Fe (LET sub 2 sub 0 sub 0 = 110 KeV/mu m) as a medium particle and fission fragments (ff) from a sup 2 sup 5 sup 2 Cf source as heavy particles. In general the bulk etch rate was calculated using the weight difference method and the track etch rate was determined using the track geometry at various temperatures (50-90 deg. C) and concentrations (4-9 N) of the NaOH etchant. The average activation energy E sub b related to the bulk etch rate v sub b was calculated from 1n v sub b vs. 1/T. The average activation energy E sub t related to the track etch rate v sub t was estimated from 1n v sub t vs. 1/T. It...
Stoltz, Nicholas G.
The goal of this thesis is to apply the oxide apertured vertical cavity laser structure in order to explore quantum dot-microcavity coupling for the development of novel single photon sources (SPS). Optical microcavities combined with active emitters provide an opportunity to study the light matter interaction on a fundamental level. Edward Purcell first theorized in 1947 that the spontaneous emission (SE) rate of an optical emitter could be modified in the presence of an optical cavity. As semiconductor microcavity technology has advanced many optoelectronic devices have benefited from the increased SE rates predicted by the Purcell effect. The development of quantum emitters on an integrated semiconductor platform in the form of semiconductor self-assembled quantum dots (QDs) has expanded applications in the field. Coupling atomic emitters to optical microcavities in the solid state allows for the study of cavity quantum electrodynamics and the fabrication single photon (SP) devices. Optoelectronic devices providing non-classical light states have a broad range of applications in quantum information science, including quantum key distribution systems, quantum lithography, and quantum computing. Here, the oxide apertured micropillar approach demonstrates high quality microcavities with cavity quality factors up to 50,000 and measured Purcell enhancements of 10. In addition the inherent advantages provided by the oxide apertured micropillar, specifically high collection efficiency, have produced SPSs with record high SP rates and quantum efficiencies representing a six-fold improvement over reported values. In addition we have developed and integrated a scheme allowing for on-chip electrical control of SP devices for the implementation of SPSs with novel functionalities. The active electrical control of QD charge state has allowed for the elimination of dark states which severely limit SP rates and efficiencies. The active electrical tuning of QD emission energy
DEFF Research Database (Denmark)
Jensen, Mette Krog; Khaliullin, Renat; Schieber, Jay D.
2012-01-01
knowledge about the effect of dangling ends and soluble structures. To interpret our recent experimental results, we exploit a molecular model that can predict LVE data and non-linear stress–strain data. The slip-link model has proven to be a robust tool for both LVE and non-linear stress–strain predictions...... strands in the ensemble are attached to the network in both ends. Next we add dangling strands to the network representing the stoichiometric imbalance, or imperfections during curing. By considering monodisperse network strands without dangling ends, we find that the relative low-frequency plateau, G0/GN......0G0G0N, decreases linearly with the average number of entanglements. The decrease from GN0G0N to G 0 is a result of monomer fluctuations between entanglements, which is similar to “longitudinal modes” in tube theory. It is found that the slope of G′ is dependent on the fraction of network strands...
Searle, Shayle R
2012-01-01
This 1971 classic on linear models is once again available--as a Wiley Classics Library Edition. It features material that can be understood by any statistician who understands matrix algebra and basic statistical methods.
Berberian, Sterling K
2014-01-01
Introductory treatment covers basic theory of vector spaces and linear maps - dimension, determinants, eigenvalues, and eigenvectors - plus more advanced topics such as the study of canonical forms for matrices. 1992 edition.
Solow, Daniel
2014-01-01
This text covers the basic theory and computation for a first course in linear programming, including substantial material on mathematical proof techniques and sophisticated computation methods. Includes Appendix on using Excel. 1984 edition.
Dalton, Gulliver T; Cifuentes, Marie P; Watson, Laurance A; Petrie, Simon; Stranger, Robert; Samoc, Marek; Humphrey, Mark G
2009-07-20
A combination of UV-vis-NIR spectroscopy, femtosecond Z-scan measurements, and time-dependent density functional theory (TD-DFT) calculations have been used to comprehensively investigate the linear optical and nonlinear optical (NLO) properties of pi-delocalizable metal-functionalized oligo(phenyleneethynylene)s. A range of unsymmetrically or symmetrically end-functionalized mono-, di-, tri-, penta-, hepta-, and nona(phenyleneethynylene)s were synthesized, with larger examples bearing varying numbers of 2,5-di(hexyloxy)phenyl groups to ensure sufficient solubility of the metal complex derivatives. The effect of incorporating varying numbers of solubilizing substituents in the OPE bridge, peripheral group modification, OPE lengthening, coligand variation, and metal location in the OPE on the linear optical properties has been established, with the first three molecular modifications resulting in significant changes in the optical absorption maxima. TD-DFT calculations reveal that the most intense transition in the linear optical spectra is localized on the OPE bridge and involves excitation from acetylenic to cumulenic molecular orbitals that are not greatly spatially separated from one another. The nonlinear optical properties are dominated by two-photon absorption, which for all but 1,4-{trans-[RuCl(dppm)(2)]C[triple bond]C}(2)C(6)H(4) appears as a band around 11,400 cm(-1) and a sharp increase of nonlinear absorption at frequencies >17,000 cm(-1). Surprisingly, there is relatively little influence of the length of the OPE bridge on the magnitude of the two-photon absorption cross sections, which are in the range 300-1000 GM.
International Nuclear Information System (INIS)
Meer, R. van; Gritsenko, O. V.; Baerends, E. J.
2014-01-01
Time dependent density matrix functional theory in its adiabatic linear response formulation delivers exact excitation energies ω α and oscillator strengths f α for two-electron systems if extended to the so-called phase including natural orbital (PINO) theory. The Löwdin-Shull expression for the energy of two-electron systems in terms of the natural orbitals and their phases affords in this case an exact phase-including natural orbital functional (PILS), which is non-primitive (contains other than just J and K integrals). In this paper, the extension of the PILS functional to N-electron systems is investigated. With the example of an elementary primitive NO functional (BBC1) it is shown that current density matrix functional theory ground state functionals, which were designed to produce decent approximations to the total energy, fail to deliver a qualitatively correct structure of the (inverse) response function, due to essential deficiencies in the reconstruction of the two-body reduced density matrix (2RDM). We now deduce essential features of an N-electron functional from a wavefunction Ansatz: The extension of the two-electron Löwdin-Shull wavefunction to the N-electron case informs about the phase information. In this paper, applications of this extended Löwdin-Shull (ELS) functional are considered for the simplest case, ELS(1): one (dissociating) two-electron bond in the field of occupied (including core) orbitals. ELS(1) produces high quality ω α (R) curves along the bond dissociation coordinate R for the molecules LiH, Li 2 , and BH with the two outer valence electrons correlated. All of these results indicate that response properties are much more sensitive to deficiencies in the reconstruction of the 2RDM than the ground state energy, since derivatives of the functional with respect to both the NOs and the occupation numbers need to be accurate
Muzi, Laura; Tardani, Franco; La Mesa, Camillo; Bonincontro, Adalberto; Bianco, Alberto; Risuleo, Gianfranco
2016-04-01
Functionalized carbon nanotubes (CNTs) have shown great promise in several biomedical contexts, spanning from drug delivery to tissue regeneration. Thanks to their unique size-related properties, single-walled CNTs (SWCNTs) are particularly interesting in these fields. However, their use in nanomedicine requires a clear demonstration of their safety in terms of tissue damage, toxicity and pro-inflammatory response. Thus, a better understanding of the cytotoxicity mechanisms, the cellular interactions and the effects that these materials have on cell survival and on biological membranes is an important first step for an appropriate assessment of their biocompatibility. In this study we show how bovine serum albumin (BSA) is able to generate homogeneous and stable dispersions of SWCNTs (BSA-CNTs), suggesting their possible use in the biomedical field. On the other hand, this study wishes to shed more light on the impact and the interactions of protein-stabilized SWCNTs with two different cell types exploiting multidisciplinary techniques. We show that BSA-CNTs are efficiently taken up by cells. We also attempt to describe the effect that the interaction with cells has on the dielectric characteristics of the plasma membrane and ion flux using electrorotation. We then focus on the BSA-CNTs’ acute toxicity using different cellular models. The novel aspect of this work is the evaluation of the membrane alterations that have been poorly investigated to date.
Single and concurrent effects of endurance and resistance training on pulmonary function.
Khosravi, Maryam; Tayebi, Seyed Morteza; Safari, Hamed
2013-04-01
As not only few evidences but also contradictory results exist with regard to the effects of resistance training (RT) and resistance plus endurance training (ERT) on respiratory system, so the purpose of this research was therefore to study single and concurrent effects of endurance and resistance training on pulmonary function. Thirty seven volunteer healthy inactive women were randomly divided into 4 groups: without training as control (C), Endurance Training (ET), RT, and ERT. A spirometry test was taken 24 hrs before and after the training course. The training period (8 weeks, 3 sessions/week) for ET was 20-26 min/session running with 60-80% maximum heart rate (HR max); for RT two circuits/session, 40-60s for each exercise with 60-80% one repetition maximum (1RM), and 1 and 3 minutes active rest between exercises and circuits respectively; and for ERT was in agreement with either ET or RT protocols, but the times of running and circuits were half of ET and RT. ANCOVA showed that ET and ERT increased significantly (P0.05) on forced expiratory volume in one second (FEV1) and FEV1/FVC ratio. In conclusion, ET combined with RT (ERT) has greater effect on VC, FVC, FEF rating at25%-75%, and also on PEF except MVV, rather than RT, and just ET has greater effect rather than ERT.
Direct injection of functional single-domain antibodies from E. coli into human cells.
Blanco-Toribio, Ana; Muyldermans, Serge; Frankel, Gad; Fernández, Luis Ángel
2010-12-08
Intracellular proteins have a great potential as targets for therapeutic antibodies (Abs) but the plasma membrane prevents access to these antigens. Ab fragments and IgGs are selected and engineered in E. coli and this microorganism may be also an ideal vector for their intracellular delivery. In this work we demonstrate that single-domain Ab (sdAbs) can be engineered to be injected into human cells by E. coli bacteria carrying molecular syringes assembled by a type III protein secretion system (T3SS). The injected sdAbs accumulate in the cytoplasm of HeLa cells at levels ca. 10⁵-10⁶ molecules per cell and their functionality is shown by the isolation of sdAb-antigen complexes. Injection of sdAbs does not require bacterial invasion or the transfer of genetic material. These results are proof-of-principle for the capacity of E. coli bacteria to directly deliver intracellular sdAbs (intrabodies) into human cells for analytical and therapeutic purposes.
Direct injection of functional single-domain antibodies from E. coli into human cells.
Directory of Open Access Journals (Sweden)
Ana Blanco-Toribio
2010-12-01
Full Text Available Intracellular proteins have a great potential as targets for therapeutic antibodies (Abs but the plasma membrane prevents access to these antigens. Ab fragments and IgGs are selected and engineered in E. coli and this microorganism may be also an ideal vector for their intracellular delivery. In this work we demonstrate that single-domain Ab (sdAbs can be engineered to be injected into human cells by E. coli bacteria carrying molecular syringes assembled by a type III protein secretion system (T3SS. The injected sdAbs accumulate in the cytoplasm of HeLa cells at levels ca. 10⁵-10⁶ molecules per cell and their functionality is shown by the isolation of sdAb-antigen complexes. Injection of sdAbs does not require bacterial invasion or the transfer of genetic material. These results are proof-of-principle for the capacity of E. coli bacteria to directly deliver intracellular sdAbs (intrabodies into human cells for analytical and therapeutic purposes.
Ha, Jae-Min; Jang, Hyung-Sik; Lim, Sung-Hwan; Choi, Sung-Min
2015-08-07
We have investigated the distributions of individually isolated and hydrophilically functionalized single-walled carbon nanotubes (p-SWNTs) in the Pluronic L121-water system at the reverse hexagonal phase using small-angle X-ray scattering (SAXS) and contrast-matched small-angle neutron scattering (SANS) measurements. As the p-SWNT-L121-water system is transitioned from the lamellar phase to the reverse hexagonal phase with temperature, p-SWNTs which were selectively distributed in the polar layers of the lamellar structure become selectively distributed in the cylindrical polar cores of the reverse hexagonal structure, forming a hexagonal array of p-SWNTs. This was clearly confirmed by the contrast-matched SANS measurements. The selective distribution of p-SWNTs in the reverse hexagonal phase is driven by the selective affinity of p-SWNTs to the polar domains of the block copolymer system. The method demonstrated in this study provides a new route for fabricating ordered SWNT superstructures and may be applicable for inorganic 1D nanoparticles such as semiconducting, metallic and magnetic nanorods which are of great interest.