Complete mitochondrial genome of a wild Siberian tiger.

Science.gov (United States)

Sun, Yujiao; Lu, Taofeng; Sun, Zhaohui; Guan, Weijun; Liu, Zhensheng; Teng, Liwei; Wang, Shuo; Ma, Yuehui

2015-01-01

In this study, the complete mitochondrial genome of Siberian tiger (Panthera tigris altaica) was sequenced, using muscle tissue obtained from a male wild tiger. The total length of the mitochondrial genome is 16,996 bp. The genome structure of this tiger is in accordance with other Siberian tigers and it contains 12S rRNA gene, 16S rRNA gene, 22 tRNA genes, 13 protein-coding genes, and 1 control region.

Paleomagnetism of Siberian Trap Intrusions: Implications for the Timing and Intensity of the Magmatic Activity

Science.gov (United States)

Latyshev, Anton; Veselovskiy, Roman; Mirsayanova, Elina; Ulyahina, Polina

2016-04-01

Large Igneous Provinces (LIPs) are the areas of the exceptional interest due to associated Cu-Ni-Pt deposits, problems of the causal link between volcanic hazards and mass extinctions, and questions about mantle plume dynamics. High-precise U-Pb and 40Ar/39Ar dating determined the duration of the main phase of the most voluminous Siberian Trap province formation as 1-2 Ma (Kamo et al., 2003; Reichow et al., 2008). Recent paleomagnetic investigations demonstrated the predominance of pulsating volcanic activity during LIPs formation (Chenet et al., 2009; Pavlov et al., 2015). We perform the results of detailed paleomagnetic study of intrusive complexes from Tunguska syncline and Angara-Taseeva depression (Siberian Trap province). Our data taken together with the previous paleomagnetic results from trap intrusions revealed two different styles of magmatic activity. In the central part of Tunguska syncline emplacement of was rather even without sharp bursts. Local intrusive events coeval to volcanic eruptions took place within spatially limited areas. In contrast, in the periphery of Tunguska syncline several short and powerful peaks of magmatic activity happened on the background of weak prolonged magmatism. These events resulted in huge Padunsky, Tulunsky and some other sills in the southern part of the Siberian platform. According to our paleomagnetic data, the duration of such pulses did not exceed 10-100 thousand years. Taking into account our paleomagnetic data and recent U-Pb ages for Siberian trap intrusions from (Burgess, Bowring, 2015), it is possible to correlate intrusive complexes with the volcanic section. In particular, formation the largest Tulunsky and Padunsky sills happened right after the termination of the main phase of Permian-Triassic volcanic activity on the Siberian platform. This work was supported by grants RFBR # 16-35-60114 and 15-35-20599 and Ministry of Education and Science of the Russian Federation (grant 14.Z50.31.0017).

The De Long Trough: a newly discovered glacial trough on the East Siberian continental margin

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M. O'Regan

2017-09-01

Full Text Available Ice sheets extending over parts of the East Siberian continental shelf have been proposed for the last glacial period and during the larger Pleistocene glaciations. The sparse data available over this sector of the Arctic Ocean have left the timing, extent and even existence of these ice sheets largely unresolved. Here we present new geophysical mapping and sediment coring data from the East Siberian shelf and slope collected during the 2014 SWERUS-C3 expedition (SWERUS-C3: Swedish – Russian – US Arctic Ocean Investigation of Climate-Cryosphere-Carbon Interactions. The multibeam bathymetry and chirp sub-bottom profiles reveal a set of glacial landforms that include grounding zone formations along the outer continental shelf, seaward of which lies a  >  65 m thick sequence of glacio-genic debris flows. The glacial landforms are interpreted to lie at the seaward end of a glacial trough – the first to be reported on the East Siberian margin, here referred to as the De Long Trough because of its location due north of the De Long Islands. Stratigraphy and dating of sediment cores show that a drape of acoustically laminated sediments covering the glacial deposits is older than ∼ 50 cal kyr BP. This provides direct evidence for extensive glacial activity on the Siberian shelf that predates the Last Glacial Maximum and most likely occurred during the Saalian (Marine Isotope Stage (MIS 6.

The new petrographic data about the Maymecha-Kotuy area of the Siberian flood-basalt province

Science.gov (United States)

Latyshev, Anton; Veselovskiy, Roman

2010-05-01

The Maymecha-Kotuy area of the Siberian flood-basalt province is of great interest because of its exceptional composition of igneous rocks. Alkaline-ultramafic rocks prevail there over basalts. It seems to be the only such trap province in the world. Investigation of the magma evolution and revealing of sources of magma is the task of an immense importance. Now there is a discussion about possible connections between the mass extinction on the boundary between Paleozoic and Mesozoic and magmatic activity expressed in formation of the largest Siberian flood-basalt province. Absence of the precise correlation of Maymecha-Kotuy area with other areas of the Siberian province does not allow estimating duration and volumes of the eruption of traps. Another question is if eruption of traps was uninterrupted or it had several pulses of magmatic activity. The solution of this problem will let estimate the degree of possible influence of the flood-basalt eruption to the environment. The represented results of investigations comprise all five igneous suites of Maymecha-Kotuy area. Petrographic investigation included research of thin sections and microprobe analyzes. The most entire sequences of Arydzhangsky and Kogotoksky suites and partly sequences of Pravoboyarsky, Delkansky and Maymechinsky suites were studied. This research allowed to reveal that the section of "Truba" on the Kotuy River belongs to Onkuchaksky suite (former lower Kogotoksky subsuite) and to reconsider the petrography of Arydzhangsky suite. Also, the research of geochemistry based on data of Fedorenko et al. (1997, 2000) lets suggest the sources of magma and its evolution. According to the new paleomagnetic data (Pavlov, Veselovskiy, Fetisova, EGU-2010), the new scheme of correlation of Maymecha-Kotuy trap section with Norilsk trap section was worked out and it became possible to estimate character of the magmatic activity in this region. In addition, it makes the contribution into the working out the

Siberian larch at the western edge of its area

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Kishchenko Ivan Tarasovich

2015-06-01

In the vertical structure of phytocenoses with Siberian larch up to 4 plant tiers are formed: the 1st and 2nd tier of the forest stand; the 3rd - grassy and shrubby; the 4th - mossy. The last two layers are usually developed very moderately, floristically poor and are noted for strong mosaic. There is no undergrowth. The reliable undergrowth of conifers is completely absent. Resumption of Siberian larch stopped 50-60 years ago.

MICHIGAN/INDIANA: Siberian Snakes strike again

International Nuclear Information System (INIS)

Anon.

1993-01-01

Full text: Siberian snakes are showing themselves to be even more deadly than expected in killing their prey, the depolarizing resonances which would make it very difficult to accelerate polarized protons to TeV energies at accelerators such as the Tevatron, UNK, LHC, and SSC. The snake concept was proposed in the mid-1970s by Siberians Yaroslav Derbenev and Anatoly Kondratenko at Novosibirsk, but the snakes lay almost dormant until Owen Chamberlain, Ernest Courant, Alan Krisch, and the late Kent Terwilliger organized the 1985 Superconducting Supercollider (SSC) polarized beam workshop in Ann Arbor, which highlighted the need to test the concept. The idea is to rotate the spin through 180° on each turn in the ring. With such successive spin flips, the depolarizing effects seen in one turn should be cancelled by an equal and opposite perturbation on the subsequent turn. The new Cooler Ring at the Indiana University Cyclotron Facility then seemed an excellent test site for these eager but untested serpents. The Michigan/lndiana/Brookhaven team led by Krisch constructed the world's first snake and found that it could easily overcome its initial enemy, the imperfection depolarizing resonances caused by ring magnet imperfections (January/February 1990, page 20). In the next few years the growing team of ''herpetologists'' showed that Siberian snakes could overcome all kinds of depolarizing resonances, including the intrinsic kind (caused by the vertical betatron oscillations which keep the beam focused) and the synchrotron resonances (caused by synchrotron oscillations in energy). The team also discovered a new type of snake that was inadvertently built into the cooling section. This socalled type-3 snake rotates the spin around the vertical direction. A full type-1 snake (such as the team's superconducting solenoid magnet) rotates the spin by 180° around the beam direction; a type-2 snake rotates the spin around the radial direction

Functional C1q is present in the skin mucus of Siberian sturgeon (Acipenser baerii).

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Fan, Chunxin; Wang, Jian; Zhang, Xuguang; Song, Jiakun

2015-01-01

The skin mucus of fish acts as the first line of self-protection against pathogens in the aquatic environment and comprises a number of innate immune components. However, the presence of the critical classical complement component C1q, which links the innate and adaptive immune systems of mammalians, has not been explored in a primitive actinopterygian fish. In this study, we report that C1q is present in the skin mucus of the Siberian sturgeon (Acipenser baerii). The skin mucus was able to inhibit the growth of Escherichia coli. The bacteriostatic activity of the skin mucus was reduced by heating and by pre-incubation with EDTA or mouse anti-human C1q antibody. We also detected C1q protein in skin mucus using the western blot procedure and isolated a cDNA that encodes the Siberian sturgeon C1qC, which had 44.7-51.4% identity with C1qCs in teleosts and tetrapods. A phylogenetic analysis revealed that Siberian sturgeon C1qC lies at the root of the actinopterygian branch and is separate from the tetrapod branch. The C1qC transcript was expressed in many tissues as well as in skin. Our data indicate that C1q is present in the skin mucus of the Siberian sturgeon to protect against water-borne bacteria, and the C1qC found in the sturgeon may represent the primitive form of teleost and tetrapod C1qCs. © 2014 International Society of Zoological Sciences, Institute of Zoology/Chinese Academy of Sciences and Wiley Publishing Asia Pty Ltd.

Cambrian trilobites with Siberian affinities, southwestern Alaska

Energy Technology Data Exchange (ETDEWEB)

Palmer, A.R.; Egbert, R.M.; Sullivan, R.; Knoth, J.S.

1985-02-01

Cambrian trilobites occur in two levels (about 7 m apart) in the core of a large, complex anticlinal structure in the area between the Taylor Mountains and the Hoholitna River in southwestern Alaska. The lower collection contains Erbia, Macannaia (a species close to Soviet forms described as Pagetia ferox Lermontova), two species of Kootenia (including one perhaps cospecific with forms from the central Brooks range), and several species of ptychoparioid trilobites. It is clear that biogeographic affinities are with the transitional facies of the eastern Siberian platform and the south Siberian foldbelt. In Soviet terms, the age of the collection falls in a disputed interval called latest Early Cambrian (Tojonian) by some authors, and earliest Middle Cambrian (Amgan) by others. In North American terms, Macannaia is known only from early Middle Cambrian beds. The younger collection contains abundant agnostids, a variety of conocoryphids, Paradoxides, and several species of ptychoparioid trilobites. This is an assemblage of undoubted late Middle Cambrian age, comparable to faunas described from the Maya State of the Siberian platform and the Paradoxides paradoxissimus Stage of the Baltic region. Both faunas are from ocean-facing or outer shelf environments. None of the key non-agnostid or non-pagetiid elements have been seen previously in deposits of Cambrian North America.

Accretionary Tectonics of Rock Complexes in the Western Margin of the Siberian Craton

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Likhanov, I. I.; Nozhkin, A. D.; Savko, K. A.

2018-01-01

The geological, geochemical, and isotope-geochronological evidence of the events at the final stage of the Neoproterozoic history of the Yenisei Range is considered (beginning from the formation of fragments of the oceanic crust in the region and their accretion to the Siberian Craton until the postaccretionary stage of crustal tension and onset of the Caledonian orogeny). Based on an analysis of new data on the petrogeochemical composition, age, and geodynamic nature of the formation of contrasting rocks in the composition of tectonic mélange of the Near-Yenisei (Prieniseiskaya) regional shear zone, we have found the chronological sequence of events that marks the early stages of the Paleoasian Ocean evolution in the zone of its junction with the Siberian Craton. These events are documented by the continental marginal, ophiolitic, and island-arc geological complexes, each of which has different geochemical features. The most ancient structures are represented by fragments of oceanic crust and island arcs from the Isakovka terrane (700-620 Ma). The age of glaucophane-schist metamorphic units that formed in the paleosubduction zone corresponds to the time interval of 640-620 Ma. The formation of high-pressure tectonites in the suture zone, about 600 Ma in age, marks the finishing stage of accretion of the Isakovka block to the western margin of the Siberian Craton. The final events in the early history of the Asian Paleoocean were related to the formation of Late Vendian riftogenic amygdaloidal basalts (572 ± 6.5 Ma) and intrusion of postcollisional leucogranites of the Osinovka massif (550-540 Ma), which intruded earlier fragments of the oceanic crust in the Isakovka terrane. These data allow us to refine the Late Precambrian stratigraphic scheme in the northwestern Trans-Angarian part of the Yenisei Range and the evolutionary features of the Sayan-Yenisei accretionary belt. The revealed Late Neoproterozoic landmarks of the evolution of the Isakovka terrane are

"European" race-specific metacentrics in East Siberian common shrews (Sorex araneus): a description of two new chromosomal races, Irkutsk and Zima.

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Pavlova, Svetlana V; Borisov, Sergei A; Timoshenko, Alexander F; Sheftel, Boris I

2017-01-01

Karyotype studies of common shrews in the vicinity of Lake Baikal (Irkutsk Region, Eastern Siberia) resulted in the description of two new chromosomal races of Sorex araneus Linnaeus, 1758 (Lypotyphla, Mammalia), additional to 5 races formerly found in Siberia. In the karyotypes of 12 specimens from 3 locations, the polymorphism of metacentric and acrocentric chromosomes of the Robertsonian type was recorded and two distinct groups of karyotypes interpreted as the chromosomal races were revealed. They are geographically distant and described under the racial names Irkutsk (Ir) and Zima (Zi). Karyotypes of both races were characterized by species-specific (the same for all 74 races known so far) metacentric autosomes af, bc, tu and jl , and the typical sex chromosome system - XX/XY 1 Y 2 . The race-specific arm chromosome combinations include three metacentrics and four acrocentrics in the Irkutsk race ( gk, hi, nq, m, o, p, r ) and four metacentrics and two acrocentrics in the Zima race ( gm, hi, ko, nq, p, r ). Within the races, individuals with polymorphic chromosomes were detected ( g/m, k/o, n/q, p/r ). The presence of the specific metacentric gk allowed us to include the Irkutsk race into the Siberian Karyotypic Group (SKG), distributed in surrounding regions. The Zima race karyotype contained two metacentrics, gm and ko , which have been never found in the Siberian part of the species range, but appear as the common feature of chromosomal races belonging to the West European Karyotypic Group (WEKG). Moreover, the metacentrics of that karyotype are almost identical to the Åkarp race (except the heterozygous pair p/r ) locally found in the southern Sweden. One of two Siberian races described here for the first time, the Zima race, occurs in an area considerably distant from Europe and shares the common metacentrics ( gm, hi, ko ) with races included in WEKG. This fact may support a hypothesis of independent formation of identical arm chromosome combinations

Construction of cDNA library and preliminary analysis of expressed sequence tags from Siberian tiger

Science.gov (United States)

Liu, Chang-Qing; Lu, Tao-Feng; Feng, Bao-Gang; Liu, Dan; Guan, Wei-Jun; Ma, Yue-Hui

2010-01-01

In this study we successfully constructed a full-length cDNA library from Siberian tiger, Panthera tigris altaica, the most well-known wild Animal. Total RNA was extracted from cultured Siberian tiger fibroblasts in vitro. The titers of primary and amplified libraries were 1.30×106 pfu/ml and 1.62×109 pfu/ml respectively. The proportion of recombinants from unamplified library was 90.5% and average length of exogenous inserts was 1.13 kb. A total of 282 individual ESTs with sizes ranging from 328 to 1,142bps were then analyzed the BLASTX score revealed that 53.9% of the sequences were classified as strong match, 38.6% as nominal and 7.4% as weak match. 28.0% of them were found to be related to enzyme/catalytic protein, 20.9% ESTs to metabolism, 13.1% ESTs to transport, 12.1% ESTs to signal transducer/cell communication, 9.9% ESTs to structure protein, 3.9% ESTs to immunity protein/defense metabolism, 3.2% ESTs to cell cycle, and 8.9 ESTs classified as novel genes. These results demonstrated that the reliability and representativeness of the cDNA library attained to the requirements of a standard cDNA library. This library provided a useful platform for the functional genomic research of Siberian tigers. PMID:20941376

Climate constraints for siberian moth distribution in Europe

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Yuri Baranchikov; Nadezda Tschebakova; Elena Parfenova; Natalia. Kirichenko

2010-01-01

A simplistic bioclimatic model of the Siberian moth Dendrolimus sibiricus Tschtvrk. (Lepidoptera: Lasiocampidae) is based on the moth's basic biological requirements, expressed through summer thermal conditions...

Indiana: Siberian Snake saves spin

Energy Technology Data Exchange (ETDEWEB)

Anon.

1990-01-15

A team working at the Indiana University Cooler Ring has used a 'Siberian Snake' system to accelerate a spin-polarized proton beam through two depolarizing resonances with no loss of spin. The Michigan/lndiana/Brookhaven team under Alan Krisch overcame their first imperfection resonance hurdle at 108 MeV, and in a subsequent run vanquished a further resonance at 177 MeV.

Nonconservative behavior of dissolved organic carbon across the Laptev and East Siberian seas

NARCIS (Netherlands)

Alling, Vanja; Sanchez-Garcia, Laura; Porcelli, Don; Pugach, Sveta; Vonk, Jorien E.; Van Dongen, Bart; Mörth, Carl Magnus; Anderson, Leif G.; Sokolov, Alexander; Andersson, Per; Humborg, Christoph; Semiletov, Igor P.; Gustafsson, Örjan

2010-01-01

Climate change is expected to have a strong effect on the Eastern Siberian Arctic Shelf (ESAS) region, which includes 40% of the Arctic shelves and comprises the Laptev and East Siberian seas. The largest organic carbon pool, the dissolved organic carbon (DOC), may change significantly due to

Chemical analysis of bioactive substances in seven siberian Saussurea species

Science.gov (United States)

Avdeeva, Elena; Reshetov, Yaroslav; Shurupova, Margarita; Zibareva, Larisa; Borisova, Evgeniia; Belousov, Mikhail

2017-11-01

Main groups of biologically active substances of seven siberian Saussurea species (S. controversa DC., S. latifolia Ledeb., S. parviflora (Poir.) DC., S. frolowii Ledeb, S. amara (L.) DC., S. salicifolia (L.) DC. and S. daurica Adams) have been studied using paper, thin-layer, performance liquid chromatography, IR spectroscopy, spectrophotometry and mass spectrometry with inductively coupled plasma. Siberian Saussurea species have a rich elemental composition and contain a variety of phenolic compounds, amino acids, polysaccharides. The majority of polysaccharides are accumulated by S. controversa, S. salicifolia and S. frolowii. These plants contain a significant amount of calcium that may be a species characteristic. All plants contain quercetin and its glycosides, in some species luteolin, kaempferol, glycosides of apigenin and myricetin were revealed. Phenolic acids with predominant content of caffeic, chlorogenic and cinnamic acids were found in all the species. The maximum amount of phenolic acids and flavonoids was determined in the grass of S. latifolia, S. controversa and S. daurica. Characteristic absorption bands of lactone carbonyl of sesquiterpenoids in IR spectrum found in S. latifolia, S. controversa, S. daurica, S. amara and S. salicifolia. HPLC / UV analysis showed that peaks with absorption maxima of 242-246 nm due to the presence of α,β-unsaturated ketone group in the structure of ecdysteroids were found in S. salicifolia, S. controversa, S. daurica and S. latifolia.

New practicable Siberian Snake schemes

International Nuclear Information System (INIS)

Steffen, K.

1983-07-01

Siberian Snake schemes can be inserted in ring accelerators for making the spin tune almost independent of energy. Two such schemes are here suggested which lend particularly well to practical application over a wide energy range. Being composed of horizontal and vertical bending magnets, the proposed snakes are designed to have a small maximum beam excursion in one plane. By applying in this plane a bending correction that varies with energy, they can be operated at fixed geometry in the other plane where most of the bending occurs, thus avoiding complicated magnet motion or excessively large magnet apertures that would otherwise be needed for large energy variations. The first of the proposed schemes employs a pair of standard-type Siberian Snakes, i.e. of the usual 1st and 2nd kind which rotate the spin about the longitudinal and the transverse horizontal axis, respectively. The second scheme employs a pair of novel-type snakes which rotate the spin about either one of the horizontal axes that are at 45 0 to the beam direction. In obvious reference to these axes, they are called left-pointed and right-pointed snakes. (orig.)

Genetic diversity of Siberian stone pine under introduction in the South Urals and Bashkir Cis-Urals

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Z. Kh. Shigapov

2016-10-01

Full Text Available Allozyme polymorphism of Siberian stone pine Pinus sibirica Du Tour has been studied in 14 artificial stands in the South Urals and Bashkir Cis-Urals on the base of 7 gene-enzyme system analysis. The following values of genetic diversity are determined: mean number of alleles per locus (A constitutes 1.69±0.08; portion of polymorphic loci (P95 – 50.0 %; the average expected heterozygosity (He – 0.121±0.015; the average observed heterozygosity (Ho – 0.127±0.017.The level of genetic variability in artificial stands of Siberian stone pine in the region is somewhat inferior to that in natural populations of the species. The highest genotype heterozygosity is determined in high-productive 110 year-old artificial stand in the South Urals (Beloretsky-2 site, and also in Ufimsky and Mishkinsky sites in Bashkir Cis-Urals. The lowest heterozygosity values are revealed in Birsky and Tuimazinsky sites characterized by the weakened vital state of individuals. In total we can speak about the maintenance of essential part of the species’ genetic polymorphism under introduction, especially in some stands. Genetic similarity of the studied stands is shown: inter-sample component of the total genetic diversity (FST constitutes 2.2 %, the average Nei’s genetic distance (D – 0.0033±0.00023, that is also typical of natural populations of Siberian stone pine in the species range. The obtained data about the genetic variability level of artificial stands in a complex with forestry characteristics give evidence of the successful species introduction in the region and the necessity of resumption of works on Siberian stone pine culture establishment in an industrial scale.

Indiana: Siberian Snake saves spin

International Nuclear Information System (INIS)

Anon.

1990-01-01

A team working at the Indiana University Cooler Ring has used a 'Siberian Snake' system to accelerate a spin-polarized proton beam through two depolarizing resonances with no loss of spin. The Michigan/lndiana/Brookhaven team under Alan Krisch overcame their first imperfection resonance hurdle at 108 MeV, and in a subsequent run vanquished a further resonance at 177 MeV

Central Siberian taiga mapping using by SPOT 4 and inventory data

Science.gov (United States)

Romanov, Aleksey

2013-04-01

training samples set has been extended manually based on the expert assessment of the first stage results. Further process was in a several iteration expanding the area for classification. The final stage classification was based on two approaches: statistical and neural network. The main problem of the first classification phase was a high degree of heterogeneity of the Reserve territory due to mixed forests; currently fuzzy neural network algorithm is under development to resolve it. The main results of the first stage of project are: percentage analysis of tree species in the Reserve (Table 1) and also geo-information analysis revealed the relationship of vegetation (tree species) distribution on the altitude. #Tree species Percentage of test forestry polygon over 70 sq km 1Pinus sibirica 24.7 2Birch (Betula) 34.3 3Siberian Spruce (Picea obovata)22.1 4Scots Pine (Pinus sylvestris) 5.3 5Larches (Larix) 7.3 6Aspen Populus tremula 3.6 7Siberian Fir 2.1 8 Other formations

Carbon mineralization in Laptev and East Siberian sea shelf and slope sediment

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V. Brüchert

2018-01-01

Full Text Available The Siberian Arctic Sea shelf and slope is a key region for the degradation of terrestrial organic material transported from the organic-carbon-rich permafrost regions of Siberia. We report on sediment carbon mineralization rates based on O2 microelectrode profiling; intact sediment core incubations; 35S-sulfate tracer experiments; pore-water dissolved inorganic carbon (DIC; δ13CDIC; and iron, manganese, and ammonium concentrations from 20 shelf and slope stations. This data set provides a spatial overview of sediment carbon mineralization rates and pathways over large parts of the outer Laptev and East Siberian Arctic shelf and slope and allows us to assess degradation rates and efficiency of carbon burial in these sediments. Rates of oxygen uptake and iron and manganese reduction were comparable to temperate shelf and slope environments, but bacterial sulfate reduction rates were comparatively low. In the topmost 50 cm of sediment, aerobic carbon mineralization dominated degradation and comprised on average 84 % of the depth-integrated carbon mineralization. Oxygen uptake rates and anaerobic carbon mineralization rates were higher in the eastern East Siberian Sea shelf compared to the Laptev Sea shelf. DIC ∕ NH4+ ratios in pore waters and the stable carbon isotope composition of remineralized DIC indicated that the degraded organic matter on the Siberian shelf and slope was a mixture of marine and terrestrial organic matter. Based on dual end-member calculations, the terrestrial organic carbon contribution varied between 32 and 36 %, with a higher contribution in the Laptev Sea than in the East Siberian Sea. Extrapolation of the measured degradation rates using isotope end-member apportionment over the outer shelf of the Laptev and East Siberian seas suggests that about 16 Tg C yr−1 is respired in the outer shelf seafloor sediment. Of the organic matter buried below the oxygen penetration depth, between 0.6 and 1.3�

Tectonics of East Siberian Sea Basin and its influence on petroleum systems

Science.gov (United States)

Karpov, Yury; Antonina, Stoupakova; Anna, Suslova; Mariia, Agasheva

2016-04-01

The East Siberian Sea basin (ESSB) is the largest part of the Siberian Arctic shelf, extending for over 1000 km from New Siberian Islands archipelago to Wrangel Island. Nowadays East Siberian Sea margin is considered as a region with probable high petroleum potential. This part of Russian Arctic shelf is the least studied. The major problems in geological investigation of East Siberian Sea shelf are absence of deep wells in area and low seismic exploration maturity. Only general conclusions on its geology and hydrocarbon systems can be drawn based on limited seismic, gravity and magnetic data, supported by projection of onshore geological data to offshore. So, that's why now only complex geological and seismic stratigraphy interpretations are provided. Today we have several concepts and can summarize the tectonic history of the basin. The basin is filled with siliclastic sediments. In the deepest depocentres sediments thickness exceed 8 km in average. Seismic data was interpreted using methods of seismic stratigraphy. Stratigraphic interpretation was possible to achieve because seismic reflections follow chronostratigraphic correlations. Finally, main seismic horizons were indicated. Each indicated horizon follows regional stratigraphic unconformity. In case of absence of deep wells in ESSB, we can only prove possible source rocks by projection of data about New Siberian Islands archipelago source rocks on offshore. The petroleum potential of these rocks was investigated by several authors [1, 2, 3]. Perspective structures, investigated in ESSB were founded out by comparing seismogeological cross-sections with explored analogs in other Russian and foreign onshore and offshore basins. The majority of structures could be connected with stratigraphic and fault traps. New data on possible petroleum plays was analyzed, large massif of data on geology and tectonic history of the region was collected, so now we can use method of basin modelling to evaluate hydrocarbon

Photoperiod Regulates vgf-Derived Peptide Processing in Siberian Hamsters.

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Barbara Noli

Full Text Available VGF mRNA is induced in specific hypothalamic areas of the Siberian hamster upon exposure to short photoperiods, which is associated with a seasonal decrease in appetite and weight loss. Processing of VGF generates multiple bioactive peptides, so the objective of this study was to determine the profile of the VGF-derived peptides in the brain, pituitary and plasma from Siberian hamsters, and to establish whether differential processing might occur in the short day lean state versus long day fat. Antisera against short sequences at the C- or N- termini of proVGF, as well as against NERP-1, TPGH and TLQP peptides, were used for analyses of tissues, and both immunohistochemistry and enzyme linked immunosorbent assay (ELISA coupled with high-performance liquid (HPLC or gel chromatography were carried out. VGF peptide immunoreactivity was found within cortex cholinergic perikarya, in multiple hypothalamic nuclei, including those containing vasopressin, and in pituitary gonadotrophs. ELISA revealed that exposure to short day photoperiod led to a down-regulation of VGF immunoreactivity in the cortex, and a less pronounced decrease in the hypothalamus and pituitary, while the plasma VGF levels were not affected by the photoperiod. HPLC and gel chromatography both confirmed the presence of multiple VGF-derived peptides in these tissues, while gel chromatography showed the presence of the VGF precursor in all tissues tested except for the cortex. These observations are consistent with the view that VGF-derived peptides have pleiotropic actions related to changing photoperiod, possibly by regulating cholinergic systems in the cortex, vasopressin hypothalamic pathways, and the reproductive axis.

Factors Influencing Formation of the Siberian Stone Pine Stands Near Settlements in Northern Taiga

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V. N. Sedykh

2014-04-01

Full Text Available The peculiarities of formation of seed productive Siberian stone pine stands near settlements, due to the total destruction of the living ground cover and forest litter, providing heat influx in the root-inhabited zone of the Siberian stone pine trees is discussed in the paper.

DEEP STRUCTURE OF THE SIBERIAN PLATFORM – CENTRAL ASIAN MOBILE BELT TRANSITION ZONE FROM TELESEISMIC DATA

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V. V. Mordvinova

2016-01-01

Full Text Available Deep velocity sections of the transition zone from the Siberian platform to the Central Asian mobile belt are constructed by teleseismic tomography and P-receiver function techniques. An array of the dense ancient Siberian craton is identified in the velocity sections with areas of high seismic velocity. In the SSW section MOBAL_2003, the surface boundary of the craton corresponds to the southern margin of the Siberian platform and is nearly vertical to a depth of 120 km. At larger depths, the craton slides almost horizontally underneath the Tunka rift area. At depths from 150 to 250 km, it is in contact with the area under the Khamar-Daban mountain range. In the southeast, according to the SE velocity section PASSCAL_1992 across the South Baikal basin and the Khamar-Daban mountain range, the Siberian craton thickness is reduced from 270 to 150 km at the contact of the Siberian platform with the Baikal folded area. In this contact zone, the upper part of the craton is wedge-shaped and has an angle of about 45° with the ground surface; it completely tapers off at a depth of 150 km to the east of Lake Baikal. The vertical configuration of the southern segment of the Siberian craton, which evolved with time, may determine the nature of the Baikal rifting in the Cenozoic. 

Effects of poly-β-hydroxybutyrate (PHB) on Siberian sturgeon (Acipenser baerii) fingerlings performance and its gastrointestinal tract microbial community.

Science.gov (United States)

Najdegerami, Ebrahim H; Tran, Tiet Ngoc; Defoirdt, Tom; Marzorati, Massimo; Sorgeloos, Patrick; Boon, Nico; Bossier, Peter

2012-01-01

Poly-β-hydroxybutyrate (PHB) is a natural polymer that can be depolymerized into water-soluble short-chain fatty acid monomers. These monomers can act as microbial control agents. In this study, the effects of partially replacing the diet of Siberian sturgeon fingerlings with 2% and 5% PHB were investigated. Replacing 2% of the diet with PHB improved weight gain, specific growth rate (SGR) and survival in the sturgeon fingerlings during the 10-week experimental period. Community-level physiological profiling and PCR-denaturing gradient gel electrophoresis (PCR-DGGE) were used to analyze the microbial community diversity and community organization in the sturgeon gastrointestinal tract. DGGE analysis revealed that PHB affected the intestinal microbial species richness and diversity. The highest species richness was observed with 2% PHB. DNA sequencing of the dominant bands in 2% and 5% PHB treatments revealed that PHB stimulated bacteria belonging to the genera Bacillus and Ruminococcaceae. Principal component analysis, Lorenz curves and the Shannon index of Biolog Ecoplate data revealed that aerobic metabolic potential of the bacterial community was different in the PHB-treated fishes as compared with the control situation. Overall, our results indicate that PHB act as microbial control agents and replacement of 2% of Siberian sturgeon fingerling diet with PHB has beneficial effects.

The Middle and Upper Eocene sections of the Omsk trough, West Siberian Platform: Palynological, stratigraphic, hydrologic, and climatic aspects

Science.gov (United States)

Zaporozhets, N. I.; Akhmetiev, M. A.

2013-01-01

The thorough analysis and correlation of Middle-Upper Eocene sections in the Omsk trough (southern West Siberian Platform) recovered by Borehole 9 in its axial part near the Chistoozernoe Settlement (Novosibirsk region) and Borehole 8 on the southern limb near the Russkaya Polyana Settlement (southern Omsk region) revealed hiatuses at the base and top of the Russkaya Polyana Beds, a lithostratigraphic unit defined in the Lyulinvor Formation based on its substantially fine-grained composition and poor siliceous microplankton fossil remains. The overlying Tavda Formation (Middle-Upper Eocene) is traditionally accepted to consist of two subformations. The last formation was deposited in the West Siberian inner sea isolated from the Arctic basin. Particular attention is paid to eustatic sea level fluctuation especially during the period marked by accumulation of Azolla Beds under considerable desalination of surface waters in the basin. The curve of variations in the open sea factor based on the quantitative ratio between organic-walled phytoplankton fossils and higher plant palynomorphs is correlated with the modified version of the wellknown Vail curve. It is established that the West Siberian sea level experienced a brief rise in the terminal late Eocene prior to its complete desiccation at the Eocene-Oligocene transition because of global regression in response to glaciation in Antarctica.

Methane from the East Siberian Arctic shelf

DEFF Research Database (Denmark)

Petrenko...[], Vasilii V.; Etheridge, David M.

2010-01-01

In their Report “Extensive methane venting to the atmosphere from sediments of the East Siberian Arctic Shelf” (5 March, p. 1246), N. Shakhova et al. write that methane (CH4) release resulting from thawing Arctic permafrost “is a likely positive feedback to climate warming.” They add...

POLARIZED BEAMS: 2 - Partial Siberian Snake rescues polarized protons at Brookhaven

International Nuclear Information System (INIS)

Huang, Haixin

1994-01-01

To boost the level of beam polarization (spin orientation), a partial 'Siberian Snake' was recently used to overcome imperfection depolarizing resonances in the Brookhaven Alternating Gradient Synchrotron (AGS). This 9-degree spin rotator recently permitted acceleration with no noticeable polarization loss. The intrinsic AGS depolarizing resonances (which degrade the polarization content) had been eliminated by betatron tune jumps, but the imperfection resonances were compensated by means of harmonic orbit corrections. However, at high energies these orbit corrections are difficult and tedious and a Siberian Snake became an attractive alternative

Pyometra in a Siberian Polecat (Mustela eversmanni)

Science.gov (United States)

Johnson, J.D.; Biggins, D.E.; Wrigley, R.H.; Mangone, B.A.; Wimsatt, J.

1999-01-01

A 2-year-old Siberian polecat (Mustela eversmanni) from a breeding colony presented for ultrasound evaluation for pregnancy. It was paired with a male for 2.75 months and had remained absent of pregnancy signs when it was anesthetized and clinically evaluated. Until this time, the animal had eaten well and shown no outward signs of debility. On palpation, the animal had a fluid-filled tubular structure in the caudal abdomen, consistent in location and size with the uterus. No sign of vaginal discharge was present. Ultrasonography revealed 10 fluid-filled evaginations (approximately 12 mm in diameter) of the uterine horns. A presumptive diagnosis of a fluid-filled reproductive tract and likely reproductive failure was made in light of the animal's history, its clinical signs, and the ultrasound findings. Euthanasia was performed because the animal was nonreproductive and might yield information relevant to the breeding colony as a whole. Necropsy of the polecat revealed a distended fluctuant uterus containing mildly odiferous, thick, yellow-green, purulent material. Histopathology confirmed the diagnosis of pyometra. A pure and heavy growth of Enterococcus fecalis was cultured from the uterine contents. In light of results from routine minimal inhibitory concentration antibiotic sensitivity screening, this isolate was resistant to all antibiotics tested in the standard teaching hospital screen.

Pyometra in a Siberian Polecat (Mustela eversmanni).

Science.gov (United States)

Johnson, Jay D.; Biggins, Dean E.; Wrigley, Robert H.; Mangone, Berney A.; Wimsatt, Jeffrey

1999-11-01

A 2-year-old Siberian polecat (Mustela eversmanni) from a breeding colony presented for ultrasound evaluation for pregnancy. It was paired with a male for 2.75 months and had remained absent of pregnancy signs when it was anesthetized and clinically evaluated. Until this time, the animal had eaten well and shown no outward signs of debility. On palpation, the animal had a fluid-filled tubular structure in the caudal abdomen, consistent in location and size with the uterus. No sign of vaginal discharge was present. Ultrasonography revealed 10 fluid-filled evaginations (approximately 12 mm in diameter) of the uterine horns. A presumptive diagnosis of a fluid-filled reproductive tract and likely reproductive failure was made in light of the animal's history, its clinical signs, and the ultrasound findings. Euthanasia was performed because the animal was nonreproductive and might yield information relevant to the breeding colony as a whole. Necropsy of the polecat revealed a distended fluctuant uterus containing mildly odiferous, thick, yellow-green, purulent material. Histopathology confirmed the diagnosis of pyometra. A pure and heavy growth of Enterococcus fecalis was cultured from the uterine contents. In light of results from routine minimal inhibitory concentration antibiotic sensitivity screening, this isolate was resistant to all antibiotics tested in the standard teaching hospital screen.

Differentiation of Siberian Miners’ Salaries in Late XIX – Early XX Centuries

Directory of Open Access Journals (Sweden)

Vasiliy P. Zinovyev

2014-06-01

Full Text Available The work considers seasonal variations and differentiation of Siberian miners’ salaries in late XIX – early XX centuries, proves that seasonal variations of salaries depended on the excess demand on labor in summer and the contraction of demand in winter, detects that salary differentiated, depending on workers’ qualification, sex, age, nationality, industry, location of an enterprise. Such differences in Siberian miners’ salaries were typical for early industrial period of the development of the society.

Results of Paleomagnetic Investigation of Angara - Taseeva Depression and Central Part of Tunguska Syncline (Siberian Trap Province, Russia)

Science.gov (United States)

Latyshev, A.; Veselovskiy, R. V.; Pavlov, V.

2014-12-01

Results of paleomagnetic investigation of two regions of Siberian Trap province (Angara - Taseeva depression and central part of Tunguska syncline) are performed here. Our work was dedicated to the estimation of dynamics and duration of magmatic activity during Siberian Traps emplacement. The conclusions are based on paleomagnetic study of large dolerite sills in the periphery of Siberian Trap province, tuffaceous deposits, small intrusions and lava flows of Tunguska syncline, and on geochronological data (Ivanov et al., 2013; Reichow et al., 2009). The presented data show that formation of Siberian Traps in these regions took place as several short bursts of magmatic activity led to large sill intrusions and eruptions of tuffs. This data are in agreement with the pulsating character of magmatic activity in the Northern part of Siberian platform (Pavlov et al., 2014). The most powerful burst of magmatic activity in Angara-Taseeva syncline is supposed to be synchronous to the main phase of volcanic eruptions in the Northern part of Siberian platform and emplacement of ore-bearing intrusions in Noril'sk district. This study was funded by grant RFBR # 14-05-31447.

Genotyping of Capreolus pygargus fossil DNA from Denisova cave reveals phylogenetic relationships between ancient and modern populations.

Directory of Open Access Journals (Sweden)

Nadezhda V Vorobieva

Full Text Available BACKGROUND: The extant roe deer (Capreolus Gray, 1821 includes two species: the European roe deer (C. capreolus and the Siberian roe deer (C. pygargus that are distinguished by morphological and karyotypical differences. The Siberian roe deer occupies a vast area of Asia and is considerably less studied than the European roe deer. Modern systematics of the Siberian roe deer remain controversial with 4 morphological subspecies. Roe deer fossilized bones are quite abundant in Denisova cave (Altai Mountains, South Siberia, where dozens of both extant and extinct mammalian species from modern Holocene to Middle Pleistocene have been retrieved. METHODOLOGY/PRINCIPAL FINDINGS: We analyzed a 629 bp fragment of the mitochondrial control region from ancient bones of 10 Holocene and four Pleistocene Siberian roe deer from Denisova cave as well as 37 modern specimen belonging to populations from Altai, Tian Shan (Kyrgyzstan, Yakutia, Novosibirsk region and the Russian Far East. Genealogical reconstructions indicated that most Holocene haplotypes were probably ancestral for modern roe deer populations of Western Siberia and Tian Shan. One of the Pleistocene haplotypes was possibly ancestral for modern Yakutian populations, and two extinct Pleistocene haplotypes were close to modern roe deer from Tian Shan and Yakutia. Most modern geographical populations (except for West Siberian Plains are heterogeneous and there is some tentative evidence for structure. However, we did not find any distinct phylogenetic signal characterizing particular subspecies in either modern or ancient samples. CONCLUSION/SIGNIFICANCE: Analysis of mitochondrial DNA from both ancient and modern samples of Siberian roe deer shed new light on understanding the evolutionary history of roe deer. Our data indicate that during the last 50,000 years multiple replacements of populations of the Siberian roe deer took place in the Altai Mountains correlating with climatic changes. The Siberian

Asian and Siberian ginseng as a potential modulator of immune function: an in vitro cytokine study using mouse macrophages.

Science.gov (United States)

Wang, Huamin; Actor, Jeffrey K; Indrigo, Jessica; Olsen, Margaret; Dasgupta, Amitava

2003-01-01

Ginseng is a widely used herbal product in China, other Asian countries, and in the Unites States. There is a traditional belief that ginseng stimulates immune functions. In this study, the innate effects of Asian and Siberian ginsengs on cytokines and chemokines produced by cultured macrophages were examined. The effects of Asian and Siberian ginseng on cytokines and chemokines produced by cultured macrophages were examined. Mouse macrophages (J774A.1) were incubated with Asian or Siberian ginseng at varying concentrations (1, 10, 100, and 1000 microg/ml) for 24 h and then harvested for RNA isolation. The expression levels of IL-1beta, IL-12, TNF-alpha, MIP-1 alpha, and MIP-2 mRNA were measured by quantitative PCR. Our data showed that Asian ginseng induced a statistically significant increase in IL-12 expression at both mRNA and protein levels. However, the minor twofold increase is probably biologically insignificant. No significant increase of IL-12 by Siberian ginseng was observed at any dose level studied. No significant change in IL-1beta, IL-15, TNF-alpha, or MIP-1alpha mRNA was observed by either Asian or Siberian ginseng treatment. Our data showed statistically significant differential regulation of IL-12 by Asian ginseng. Siberian ginseng did not show a statistically significant increase. We conclude that both Asian ginseng and Siberian ginseng cannot significantly stimulate innate macrophage immune functions that influence cellular immune responses. Therefore, contrary to the popular belief, Asian and Siberian ginseng may not stimulate immune function.

Peptic Ulcer Disease and Helicobacter pylori Infection in Different Siberian Ethnicities.

Science.gov (United States)

Tsukanov, Vladislav V; Kasparov, Edward V; Tonkikh, Julia L; Shtygasheva, Olga V; Butorin, Nikolay N; Amelchugova, Olga S; Vasyutin, Alexander V; Bronnikova, Elena P; Fassan, Matteo; Rugge, Massimo

2017-02-01

The high prevalence of Helicobacter pylori (H. pylori) infection in eastern Siberia is consistently established. In the same geographic area, however, fragmentary information is available on the epidemiology of the peptic ulcer disease (PUD). To assess the prevalence of H. pylori infection (including CagA status) and PUD in different eastern Siberian ethnicities. An endoscopy population of 3149 eastern Siberian dyspeptic patients was considered [1727 Europoids and 1422 Mongoloids (Evenks = 792; Khakases = 630)]. H. pylori status was assessed by urease test and/or serum anti-H. pylori IgG and/or histology. CagA status was serologically assessed (anti-CagA antibodies). All the Siberian ethnicities featured high rates of H. pylori infection (Europoids = 87.1%, Evenks = 88.6%, Khakases = 85.4%). Among the 1504 H. pylori-positive Europoids, the prevalence of CagA-positive status (68.7%) was significantly higher than that featured by the 1240 H. pylori-positive Mongoloid ethnicities (46.9%; p Peptic ulcer disease significantly prevailed among Europoids (prevalence among Europoid Evenks and Khakases: 8.9% and 8.3%, respectively; prevalence among Mongoloid Evenks and Khakases = 1.0% and 4.4%, respectively). eastern Siberian populations feature consistent high rates of H. pylori infection, but different prevalence of peptic ulcer disease. In particular, Europoids featured a prevalence of both CagA-positive status and peptic ulcer disease significantly higher than that of the Mongoloid ethnicities. These results suggest that both environmental factors (coexisting with the H. pylori infection) and host-related variables modulate the clinicopathological expression of the H. pylori -associated gastric diseases. © 2016 John Wiley & Sons Ltd.

Neomycin damage and regeneration of hair cells in both mechanoreceptor and electroreceptor lateral line organs of the larval Siberian sturgeon (Acipenser baerii).

Science.gov (United States)

Fan, Chunxin; Zou, Sha; Wang, Jian; Zhang, Bo; Song, Jiakun

2016-05-01

The lateral line found in some amphibians and fishes has two distinctive classes of sensory organs: mechanoreceptors (neuromasts) and electroreceptors (ampullary organs). Hair cells in neuromasts can be damaged by aminoglycoside antibiotics and they will regenerate rapidly afterward. Aminoglycoside sensitivity and the capacity for regeneration have not been investigated in ampullary organs. We treated Siberian sturgeon (Acipenser baerii) larvae with neomycin and observed loss and regeneration of sensory hair cells in both organs by labeling with DASPEI and scanning electron microscopy (SEM). The numbers of sensory hair cells in both organs were reduced to the lowest levels at 6 hours posttreatment (hpt). New sensory hair cells began to appear at 12 hpt and were regenerated completely in 7 days. To reveal the possible mechanism for ampullary hair cell regeneration, we analyzed cell proliferation and the expression of neural placodal gene eya1 during regeneration. Both cell proliferation and eya1 expression were concentrated in peripheral mantle cells and both increased to the highest level at 12 hpt, which is consistent with the time course for regeneration of the ampullary hair cells. Furthermore, we used Texas Red-conjugated gentamicin in an uptake assay following pretreatment with a cation channel blocker (amiloride) and found that entry of the antibiotic was suppressed in both organs. Together, our results indicate that ampullary hair cells in Siberian sturgeon larvae can be damaged by neomycin exposure and they can regenerate rapidly. We suggest that the mechanisms for aminoglycoside uptake and hair cell regeneration are conserved for mechanoreceptors and electroreceptors. J. Comp. Neurol. 524:1443-1456, 2016. © 2015 Wiley Periodicals, Inc. © 2015 Wiley Periodicals, Inc.

Phenotype specific analyses reveal distinct regulatory mechanism for chronically activated p53.

Directory of Open Access Journals (Sweden)

Kristina Kirschner

2015-03-01

Full Text Available The downstream functions of the DNA binding tumor suppressor p53 vary depending on the cellular context, and persistent p53 activation has recently been implicated in tumor suppression and senescence. However, genome-wide information about p53-target gene regulation has been derived mostly from acute genotoxic conditions. Using ChIP-seq and expression data, we have found distinct p53 binding profiles between acutely activated (through DNA damage and chronically activated (in senescent or pro-apoptotic conditions p53. Compared to the classical 'acute' p53 binding profile, 'chronic' p53 peaks were closely associated with CpG-islands. Furthermore, the chronic CpG-island binding of p53 conferred distinct expression patterns between senescent and pro-apoptotic conditions. Using the p53 targets seen in the chronic conditions together with external high-throughput datasets, we have built p53 networks that revealed extensive self-regulatory 'p53 hubs' where p53 and many p53 targets can physically interact with each other. Integrating these results with public clinical datasets identified the cancer-associated lipogenic enzyme, SCD, which we found to be directly repressed by p53 through the CpG-island promoter, providing a mechanistic link between p53 and the 'lipogenic phenotype', a hallmark of cancer. Our data reveal distinct phenotype associations of chronic p53 targets that underlie specific gene regulatory mechanisms.

Adiabatic Siberian snake turn-on and acceleration through depolarizing resonances

International Nuclear Information System (INIS)

Koulsha, A.V.; Anferov, V.A.; Baiod, R.

1993-01-01

The authors plan to install in the IUCF Cooler Ring a rampable partial (30%) Siberian snake to test if the spin polarization is preserved during adiabatic turn-on. They also plan to use this ramped snake to accelerate polarized protons to 370 MeV while passing through two depolarizing resonances. The Siberian snake will consist of two small rampable warm solenoids placed symmetrically on either side of the exciting cold 2 T·m solenoid which would run dc at about 0.5 T·m. Ramping each warm magnet from about -0.25T·m to + 0.25 T·m. Recent experiments showed that turning on the snake in 100 msec at 370 MeV causes no serious beam loss

Adiabatic partial Siberian snake turn-on with no beam depolarization

International Nuclear Information System (INIS)

Phelps, R.A.; Anferov, V.A.; Chu, C.M.; Courant, E.D.; Crandell, D.A.; Derbenev, Y.S.; Kaufman, W.A.; Koulsha, A.V.; Krisch, A.D.; Nurushev, T.S.; Raczkowksi, D.B.; Sund, S.E.; Wong, V.K.; Caussyn, D.D.; Ellison, T.J.P.; Lee, S.Y.; Sperisen, F.; Stephenson, E.J.; von Przewoski, B.; Baiod, R.; Khiari, F.Z.; Ratner, L.G.; Sato, H.

1994-01-01

A recent experiment in the IUCF cooler ring studied the adiabatic turn-on of a partial Siberian snake at 370 MeV, where the spin tune, ν s is 21/2 for all snake strengths. The snake consisted of two rampable warm solenoid magnets in series with a superconducting solenoid; this combination allowed varying the snake strength between about 0 and 25% at 370 MeV. We measured the beam polaraization after varying the snake either 1, 2, or 10 times; we found with good precision that no polarization was lost. This supports the conjecture that a Siberian snake can be ramped adiabatically at an energy where the spin tune is a half integer

Characterization of a siberian virus isolated from a patient with progressive chronic tick-borne encephalitis.

Science.gov (United States)

Gritsun, T S; Frolova, T V; Zhankov, A I; Armesto, M; Turner, S L; Frolova, M P; Pogodina, V V; Lashkevich, V A; Gould, E A

2003-01-01

A strain of Tick-borne encephalitis virus designated Zausaev (Za) was isolated in Siberia from a patient who died of a progressive (2-year) form of tick-borne encephalitis 10 years after being bitten by a tick. The complete genomic sequence of this virus was determined, and an attempt was made to correlate the sequence with the biological characteristics of the virus. Phylogenetic analysis demonstrated that this virus belongs to the Siberian subtype of Tick-borne encephalitis virus. Comparison of Za virus with two related viruses, a Far Eastern isolate, Sofjin, and a Siberian isolate, Vasilchenko, revealed differences among the three viruses in pathogenicity for Syrian hamsters, cytopathogenicity for PS cells, plaque morphology, and the electrophoretic profiles of virus-specific nonstructural proteins. Comparative amino acid alignments revealed 10 individual amino acid substitutions in the Za virus polyprotein sequence that were different from those of other tick-borne flaviviruses. Notably, the dimeric form of the Za virus NS1 protein migrated in polyacrylamide gels as a heterogeneous group of molecules with a significantly higher electrophoretic mobility than those of the Sofjin and Vasilchenko viruses. Two amino acid substitutions, T(277)-->V and E(279)-->G, within the NS1 dimerization domain are probably responsible for the altered oligomerization of Za virus NS1. These studies suggest that the patient from whom Za virus was isolated died due to increased pathogenicity of the latent virus following spontaneous mutagenesis.

Age and Heat Stress as Determinants of Telomere Length in a Long-Lived Fish, the Siberian Sturgeon.

Science.gov (United States)

Simide, Rémy; Angelier, Frédéric; Gaillard, Sandrine; Stier, Antoine

2016-01-01

Telomeres shorten at each cell division due to the end-replication problem but also in response to oxidative stress. Consequently, telomeres shorten with age in many endotherms, and this shortening is accelerated under stressful environmental conditions. Data in ectotherm vertebrates remain scarce so far, so our goal was to review existing data for fish and to test the influence of age and stress on telomere length in a very long-lived fish, the Siberian sturgeon (Acipenser baerii). Our review of the literature revealed age-related telomere shortening in approximately half of the published studies. In the Siberian sturgeon, we found a significant telomere shortening with age, both at the intraindividual level using red blood cells (-12.5% in 16 mo) and at the interindividual level using cross-sectional samples of fin over an age range of 8 yr. We also found that heat stress (30°C) significantly reduced telomere length by 15.0% after only 1 mo of exposure. Our results highlight that both age and stressful environmental conditions might be important determinants of telomere length in fish.

Outbreak and genotyping of canine distemper virus in captive Siberian tigers and red pandas.

Science.gov (United States)

Zhang, He; Shan, Fen; Zhou, Xia; Li, Bing; Zhai, Jun-Qiong; Zou, Shu-Zhan; Wu, Meng-Fan; Chen, Wu; Zhai, Shao-Lun; Luo, Man-Lin

2017-08-15

In this study, four canine distemper virus (CDV) strains were isolated from captive Siberian tigers (Panthera tigris altaica) and red pandas (Ailurus fulgens) during two separate CDV outbreaks in a zoo in Guangdong province, China. Sequence alignment and phylogenetic analyses based on the full-length hemagglutinin (H) and fusion (F) genes showed that they were closely identical to genotype Asia-1. Prior to confirmation of CDV in Siberian tigers, to control spread of the disease, a live attenuated combination CDV vaccine was used among almost all carnivore animals except for red pandas in which another recombinant combination CDV vaccine was used. However, about two months later, CDV re-emerged and caused the death among red pandas. Based on the vaccination records, the live combination vaccine could be considered an ideal weapon against CDV in zoo carnivore animals. Although the recombinant combination CDV vaccine was safe for red pandas, its protection effectiveness remains to be further investigated. Moreover, according to the outbreak interval time and sequence characterization, we suspected that stray cats circulating in the zoo were the intermediate host, which contributed to CDV spread from stray dogs to zoo animals. This study revealed the importance of vaccination and biosecurity for zoo animals.

Deglacial sea level history of the East Siberian Sea and Chukchi Sea margins

Science.gov (United States)

Cronin, Thomas M.; O'Regan, Matt; Pearce, Christof; Gemery, Laura; Toomey, Michael; Semiletov, Igor; Jakobsson, Martin

2017-09-01

Deglacial (12.8-10.7 ka) sea level history on the East Siberian continental shelf and upper continental slope was reconstructed using new geophysical records and sediment cores taken during Leg 2 of the 2014 SWERUS-C3 expedition. The focus of this study is two cores from Herald Canyon, piston core SWERUS-L2-4-PC1 (4-PC1) and multicore SWERUS-L2-4-MC1 (4-MC1), and a gravity core from an East Siberian Sea transect, SWERUS-L2-20-GC1 (20-GC1). Cores 4-PC1 and 20-GC were taken at 120 and 115 m of modern water depth, respectively, only a few meters above the global last glacial maximum (LGM; ˜ 24 kiloannum or ka) minimum sea level of ˜ 125-130 meters below sea level (m b.s.l.). Using calibrated radiocarbon ages mainly on molluscs for chronology and the ecology of benthic foraminifera and ostracode species to estimate paleodepths, the data reveal a dominance of river-proximal species during the early part of the Younger Dryas event (YD, Greenland Stadial GS-1) followed by a rise in river-intermediate species in the late Younger Dryas or the early Holocene (Preboreal) period. A rapid relative sea level rise beginning at roughly 11.4 to 10.8 ka ( ˜ 400 cm of core depth) is indicated by a sharp faunal change and unconformity or condensed zone of sedimentation. Regional sea level at this time was about 108 m b.s.l. at the 4-PC1 site and 102 m b.s.l. at 20-GC1. Regional sea level near the end of the YD was up to 42-47 m lower than predicted by geophysical models corrected for glacio-isostatic adjustment. This discrepancy could be explained by delayed isostatic adjustment caused by a greater volume and/or geographical extent of glacial-age land ice and/or ice shelves in the western Arctic Ocean and adjacent Siberian land areas.

Distinguishing Clouds from Ice over the East Siberian Sea, Russia

Science.gov (United States)

2002-01-01

As a consequence of its capability to retrieve cloud-top elevations, stereoscopic observations from the Multi-angle Imaging SpectroRadiometer (MISR) can discriminate clouds from snow and ice. The central portion of Russia's East Siberian Sea, including one of the New Siberian Islands, Novaya Sibir, are portrayed in these views from data acquired on May 28, 2002.The left-hand image is a natural color view from MISR's nadir camera. On the right is a height field retrieved using automated computer processing of data from multiple MISR cameras. Although both clouds and ice appear white in the natural color view, the stereoscopic retrievals are able to identify elevated clouds based on the geometric parallax which results when they are observed from different angles. Owing to their elevation above sea level, clouds are mapped as green and yellow areas, whereas land, sea ice, and very low clouds appear blue and purple. Purple, in particular, denotes elevations very close to sea level. The island of Novaya Sibir is located in the lower left of the images. It can be identified in the natural color view as the dark area surrounded by an expanse of fast ice. In the stereo map the island appears as a blue region indicating its elevation of less than 100 meters above sea level. Areas where the automated stereo processing failed due to lack of sufficient spatial contrast are shown in dark gray. The northern edge of the Siberian mainland can be found at the very bottom of the panels, and is located a little over 250 kilometers south of Novaya Sibir. Pack ice containing numerous fragmented ice floes surrounds the fast ice, and narrow areas of open ocean are visible.The East Siberian Sea is part of the Arctic Ocean and is ice-covered most of the year. The New Siberian Islands are almost always covered by snow and ice, and tundra vegetation is very scant. Despite continuous sunlight from the end of April until the middle of August, the ice between the island and the mainland

Fir Decline and Mortality in the Southern Siberian Mountains

Science.gov (United States)

Kharuk, Viacheslav I.; Im, Sergei T.; Petrov, Ilya A.; Dvinskaya, Mariya, L.; Fedotova, Elena V.; Ranson, Kenneth J.

2016-01-01

Increased dieback and mortality of dark needle conifer (DNC) stands (composed of fir (Abies sibirica),Siberian pine (Pinus sibirica) and spruce (Picea obovata))were documented in Russia during recent decades. Here we analyzed spatial and temporal patterns of fir decline and mortality in the southern Siberian Mountains based on satellite, in situ and dendrochronological data. The studied stands are located within the boundary between DNC taiga to the north and forest-steppe to the south. Fir decline and mortality were observed to originate where topographic features contributed to maximal water-stress risk, i.e., steep (1825),convex, south-facing slopes with a shallow well-drained root zone. Fir regeneration survived droughts and increased stem radial growth, while upper canopy trees died. Tree ring width(TRW) growth negatively correlated with vapor pressure deficit (VPD), drought index and occurrence of late frosts, and positively with soil water content. Previous year growth conditions (i.e., drought index, VPD, soil water anomalies)have a high impact on current TRW (r 0.600.74). Fir mortality was induced by increased water stress and severe droughts (as a primary factor) in synergy with bark-beetles and fungi attacks (as secondary factors). Dendrochronology data indicated that fir mortality is a periodic process. In a future climate with increased aridity and drought frequency, fir (and Siberian pine) may disappear from portions of its current range (primarily within the boundary with the forest steppe)and is likely to be replaced by drought-tolerant species such as Pinus sylvestris and Larix sibirica.

[Industrial production of the LDRD "Siberia-N" digital radiographic devices].

Science.gov (United States)

Baru, S E; Ukraintsev, Iu G

2004-01-01

It is envisaged, as a key task, in the Federal Program on Tuberculosis Monitoring, that preventive measures and early TB detection is a priority. Fluorography, which is important for the recognition of pulmonary tuberculosis at its early stages, has been used in the diagnostics of pulmonary pathologies. However, according to the statistics provided by the Russian Ministry of Healthcare, around 80% of available medical equipment is now worn and obsolete. Owing to a fruitful research activity related with designing a digital low-dose X-Ray unit (Siberia-N) carried out by the Budker Institute of Nuclear Physics, Siberian Branch of the Russian Academy of Sciences (Novosibirsk), a certain progress can be stated in perfecting the fluorography equipment in Russia. The above unit incorporates all advanced achievements in the field of digital X-Ray diagnostics.

Outbreak and genotyping of canine distemper virus in captive Siberian tigers and red pandas

OpenAIRE

Zhang, He; Shan, Fen; Zhou, Xia; Li, Bing; Zhai, Jun-Qiong; Zou, Shu-Zhan; Wu, Meng-Fan; Chen, Wu; Zhai, Shao-Lun; Luo, Man-Lin

2017-01-01

In this study, four canine distemper virus (CDV) strains were isolated from captive Siberian tigers (Panthera tigris altaica) and red pandas (Ailurus fulgens) during two separate CDV outbreaks in a zoo in Guangdong province, China. Sequence alignment and phylogenetic analyses based on the full-length hemagglutinin (H) and fusion (F) genes showed that they were closely identical to genotype Asia-1. Prior to confirmation of CDV in Siberian tigers, to control spread of the disease, a live attenu...

Metabolic influences on circadian rhythmicity in Siberian and Syrian hamsters exposed to long photoperiods.

Science.gov (United States)

Challet, E; Kolker, D E; Turek, F W

2000-01-01

Calorie restriction and other situations of reduced glucose availability in rodents alter the entraining effects of light on the circadian pacemaker located in the suprachiasmatic nuclei. Siberian and Syrian hamsters are photoperiodic species that are sexually active when exposed to long summer-like photoperiods, while both species show opposite changes in body mass when transferred from long to short or short to long days. Because metabolic cues may fine tune the photoperiodic responses via the suprachiasmatic nuclei, we tested whether timed calorie restriction can alter the photic synchronization of the light-entrainable pacemaker in these two hamster species exposed to long photoperiods. Siberian and Syrian hamsters were exposed to 16 h:8 h light:dark cycles and received daily hypocaloric (75% of daily food intake) or normocaloric diet (100% of daily food intake) 4 h after light onset. Four weeks later, hamsters were transferred to constant darkness and fed ad libitum. The onset of the nocturnal pattern of locomotor activity was phase advanced by 1.5 h in calorie-restricted Siberian hamsters, but not in Syrian hamsters. The lack of phase change in calorie-restricted Syrian hamsters was also observed in individuals exposed to 14 h:10 h dim light:dark cycles and fed with lower hypocaloric food (i.e. 60% of daily food intake) 2 h after light onset. Moreover, in hamsters housed in constant darkness and fed ad lib., light-induced phase shifts of the locomotor activity in Siberian hamsters, but not in Syrian hamsters were significantly reduced when glucose utilization was blocked by pretreatment with 500 mg/kg i.p. 2-deoxy-D-glucose. Taken together, these results show that the photic synchronization of the light-entrainable pacemaker can be modulated by metabolic cues in Siberian hamsters, but not in Syrian hamsters maintained on long days.

Blueschist facies fault tectonites from the western margin of the Siberian Craton: Implications for subduction and exhumation associated with early stages of the Paleo-Asian Ocean

Science.gov (United States)

Likhanov, Igor I.; Régnier, Jean-Luc; Santosh, M.

2018-04-01

The tectonic evolution of the Siberian Cratonic margins offers important clues for global paleogeographic reconstructions, particularly with regard to the complex geological history of Central Asia. The Yenisey Ridge fold-and-thrust belt at the western margin of the Siberian Craton forms part of the Central Asian Orogenic Belt (CAOB) and is a key to understand the Precambrian tectonic evolution of the Siberian Craton and crustal growth in the CAOB, the world's largest Phanerozoic accretionary orogenic belt. Here we report for the first time, the occurrence of glaucophane schist relics in tectonites within the Yenisey shear zone which provides insights on Chilean-type convergent boundary. We present results from isotope geochronology (SHRIMP zircon analysis and mica 40Ar/39Ar dating), coupled with P-T calculations derived from conventional geothermobarometry and pseudosections in the system NCKFMASH that suggest two superimposed metamorphic events. During the first stage, glaucophane schists formed at around 640-620 Ma at P-T conditions of 8-10 kbar and 400-450 °C. In the second stage, the rocks experienced dynamic metamorphism (c. 600 Ma) at 11-15 kbar/550-640 °C. The differences in P-T parameters between weakly deformed rocks and intensely deformed tectonites and P-T paths suggest distinct tectonic processes. Geochemical features of the mafic tectonites suggest N-MORB and E-MORB affinity, and the zircon U-Pb ages suggest formation of the protoliths at 701.6 ± 8.4. The sequence of spreading, subduction and shear deformation identified in our study correlate with the early stages of development of the Paleo-Asian Ocean at the western margin of the Siberian Craton and supports the spatial proximity of Siberia and Laurentia at 700-600 Ma, as proposed for the Late Neoproterozoic paleogeographic reconstructions and as robustly constrained from large igneous province (LIP) record.

Helical Siberian snakes using dipole magnets

International Nuclear Information System (INIS)

Wienands, U.

1990-09-01

A family of multi-twist transverse-field spin rotators using discrete bending magnets is described that can be used as Siberian snakes. By varying the number of twists, snakes with quite small excursions can be constructed at only a small penalty in the overall field integral. Examples for a 1/4-twist snake and a 3-twist snake are presented, the first suitable for a very high energy machine and the second for use in the proposed TRIUMF Kaon Factory. (Author) (3 refs.)

Isolation and characterization of an atypical Siberian sturgeon herpesvirus strain in Russia: novel North American Acipenserid herpesvirus 2 strain in Europe?

Science.gov (United States)

Doszpoly, A; Kalabekov, I M; Breyta, R; Shchelkunov, I S

2017-10-01

Siberian sturgeon herpesvirus (SbSHV) was isolated in Russia for the first time in 2006. Nine SbSHV isolates were recovered from different fish hatcheries producing the same cytopathic effect in cell cultures, the same clinical signs and mortality kinetics in virus-infected fish and the same virus neutralization pattern and shared identical nucleotide sequences. In 2011, a new isolate was recovered from juvenile sturgeon, which caused completely different cytopathic effect. That isolate was not readily neutralized by Siberian sturgeon hyperimmune antisera, and its DNA was not recognized by the routine PCR developed for SbSHV detection. Molecular study of the novel isolate revealed that it was more closely related to North American Acipenserid herpesvirus 2 (AciHV-2) isolates from white sturgeon, while the genome sequences of the former SbSHV isolates showed high similarity to the AciHV-2 isolated from shortnose sturgeon. While clinical signs and mortality caused by the novel isolate in infected Siberian sturgeon were similar to those of the formerly described SbSHV isolates, the incubation period and mean time to death produced by the novel isolate were twice as long. The differences between the former isolates and the recent one suggest that a novel SbSHV strain emerged in Europe and the molecular findings imply its North American origin. © 2017 John Wiley & Sons Ltd.

Review of the Book: Trepavlov V.V., Belyakov A.V. Sibirskie tsarevichi v istorii Rossii [The Siberian Princes in the History of Russia

Directory of Open Access Journals (Sweden)

D.N. Maslyuzhenko

2018-03-01

Full Text Available This article analyzes the new book by Russian historians V.V. Trepavlov and A.V. Be­lyakov dedicated to the Siberian princes and their role in national history. The first part of the book is dedicated to the struggle of Kuchum Khan and his descendants for revenge in Siberia and the restoration of the Siberian Khanate, and the second one – to the conditions of the Kuchumovichi’s appearances in the Moscow state, their inhabitancy, the role in political processes and the further disappearance of the dynasty. The book is written on the basis of a large number of archival documents, mainly from the Russian State Archives of Ancient Acts (RGADA. It allowed reconstructing the rich tapestry of the Kuchumovichi’s life in Siberia and the Moscow state based on the methods and traditions of political history, studies of everyday life, prosopography, microhistory and genealogy. On the one hand, the book will be important for studies of Siberia, because the Siberian kings and princes in the Moscow state tried, if possible, to keep their familiar surroundings for a long time that preserved some distinctive features of their prior life’s period, which cannot be directly reconstructed with local materials. On the other hand, many nuances of the everyday life of these dynasts and their entourage can characterize not only the Siberian aristocracy but also the relevant layers of Moscow society as a whole, for which the Eastern traditions were also not immune to. Therein, we get an interesting slice of the Moscow society of the 16th–17th centuries: notably, the gradual forfeiture of the princes directly coincided with the exhaustion of the post-Horde and Eastern traditions in Russia as a whole. Despite some minor shortcomings, the materials of the monograph are so manifold so each reader will find in it some of his or her own interesting aspects, and will get an idea of an interesting slice of the Russian history of the 16th–17th centuries.

Eosinophilic granulomatous gastroenterocolitis and hepatitis in a 1-year-old male Siberian Husky.

Science.gov (United States)

Brellou, G D; Kleinschmidt, S; Meneses, F; Nolte, I; Hewicker-Trautwein, M

2006-11-01

A case of eosinophilic granulomatous gastroenterocolitis and hepatitis in a 1-year-old male Siberian Husky is described. The dog presented with a history of diarrhea, weakness, lethargy, and anorexia of several months' duration. Hematologic and biochemical examinations, abdominal ultrasonography, computer tomography, and exploratory laparotomy were performed. Histopathologic examination of full-thickness biopsies from the gastrointestinal tract and liver revealed the presence of eosinophilic granulomatous lesions in the submucosa and tunica muscularis of stomach, jejunum, ileum, colon, and liver. Infectious agents were not detected by light microscopic and electron microscopic examination or by immunohistochemistry. On the basis of the findings, it is concluded that the disease in this dog represents an unusual manifestation of chronic idiopathic inflammatory bowel disease.

Borrelia burgdorferi Sensu Lato in Siberian chipmunks (Tamias sibiricus) introduced in suburban forests in France.

Science.gov (United States)

Vourc'h, Gwenaël; Marmet, Julie; Chassagne, Michelle; Bord, Séverine; Chapuis, Jean-Louis

2007-01-01

Numerous vertebrate reservoirs have been described for Borrelia burgdorferi sensu lato (sl), which includes the etiological agents of Lyme Borreliosis (LB). The Siberian chipmunk (Tamias sibiricus) is a rodent originating from Asia, where it is suspected to be a B. burgdorferi reservoir. It has been intentionally released into the wild in Europe since the 1970s, but has not yet been subject to any study regarding its association with the LB agent. In this paper we studied Siberian chipmunk infestation with the LB vector (Ixodes ricinus) and infection prevalence by LB spirochetes in a suburban introduced population. We compared these findings with known competent reservoir hosts, the bank vole (Myodes [clethrionomys] glareolus) and wood mouse (Apodemus sylvaticus). All Siberian chipmunks were infested with larvae and larval abundance was higher in this species (mean number of larvae [95% Confidence Interval]: 73.5 [46.0, 117.2]) than in the two other rodent species (bank voles: 4.4 [3.0, 6.3] and wood mice: 10.2 [4.9, 21.2]). Significant factors affecting abundance of larvae were host species and sampling season. Nymphs were most prevalent on chipmunks (86.2%, mean: 5.1 [3.3, 8.0]), one vole carried only two nymphs, and none of the mice had any nymphs. Nymph abundance in chipmunks was affected by sampling season and sex. Furthermore, the infection prevalence of B. burgdorferi sl in the Siberian chipmunk was the highest (33.3%) and predominantly of B. afzelii. The infection prevalence was 14.1% in bank voles, but no wood mouse was found to be infected. Our results suggest that the Siberian chipmunk may be an important reservoir host for LB.

Global nickel anomaly links Siberian Traps eruptions and the latest Permian mass extinction.

Science.gov (United States)

Rampino, Michael R; Rodriguez, Sedelia; Baransky, Eva; Cai, Yue

2017-09-29

Anomalous peaks of nickel abundance have been reported in Permian-Triassic boundary sections in China, Israel, Eastern Europe, Spitzbergen, and the Austrian Carnic Alps. New solution ICP-MS results of enhanced nickel from P-T boundary sections in Hungary, Japan, and Spiti, India suggest that the nickel anomalies at the end of the Permian were a worldwide phenomenon. We propose that the source of the nickel anomalies at the P-T boundary were Ni-rich volatiles released by the Siberian volcanism, and by coeval Ni-rich magma intrusions. The peaks in nickel abundance correlate with negative δ 13 C and δ 18 O anomalies, suggesting that explosive reactions between magma and coal during the Siberian flood-basalt eruptions released large amounts of CO 2 and CH 4 into the atmosphere, causing severe global warming and subsequent mass extinction. The nickel anomalies may provide a timeline in P-T boundary sections, and the timing of the peaks supports the Siberian Traps as a contributor to the latest Permian mass extinction.

Distribution, densities, and ecology of Siberian cranes in the Khroma River region of northern Yakutia in northeastern Russia

Science.gov (United States)

Bysykatova, Inga P.; Krapu, Gary L.; Germogenov, Nicolai I.; Buhl, Deborah A.; Aborn, David

2014-01-01

The Siberian crane (Grus leucogeranus) is the third rarest crane species in the world with a breeding range now centered on 3 core areas and a buffer zone in the arctic of northern Yakutia in northeastern Russia. During 16 July-2 August 2009, we undertook ground surveys within the Khroma River core breeding area, surrounding buffer zone, and lands lying to the west of the known rbeeding range to estimate densities and determine habitat use and social status of Siberian cranes. A total of 142 Siberian cranes were sighted (including 55 pairs) at 54 locations with 32 cranes (including 13 pairs) sighted outside the currently known breeding range in the lower drainages of the Syalakh and Syuryuktyakh Rivers. After adjusting for a probability of detection of 0.484 (95% CI = 0.281-0.833), Siberian crane densities in the Khroma core area and the buffer zone averaged 0.0921 cranes/km2 and 0.0363 cranes/km2, respectively. A majority of cranes (n = 93 [65%]) occurred in complexes of large basin wetlands, with use centered in those having extensive beds of pendant grass (Arctophila fulva). Of the 142 cranes seen, 110 (77%) were paired, 21 (15%) were singles, and 11 (8%) were in groups of 3-5. The Khroma core supports 1 of 2 large concentrations of breeding Siberian cranes remaining in the wild; therefore, we recommend that consideration be given to designating a nature reserve that would encompass the Khroma core, adjacent buffer zone, and lands to the west (including coastal tundra areas along the lower drainages of the Syalah and Syuryuktyah Rivers). Further research is needed to gain additional insight into Siberian crane distribution and numbers on lands beyond the currently delineated western boundary of the Siberian crane breeding range in the Ust-Yana District of northern Yakutia. Important gaps remain in information needed to effectively guide conservation efforts for the Eastern Population, and recent advances in remote tracking technology offer potential

Ecology of nonnative Siberian prawn (Palaemon modestus) in the lower Snake River, Washington, USA

Science.gov (United States)

Erhardt, John M.; Tiffan, Kenneth F.

2016-01-01

We assessed the abundance, distribution, and ecology of the nonnative Siberian prawn Palaemon modestus in the lower Snake River, Washington, USA. Analysis of prawn passage abundance at three Snake River dams showed that populations are growing at exponential rates, especially at Little Goose Dam where over 464,000 prawns were collected in 2015. Monthly beam trawling during 2011–2013 provided information on prawn abundance and distribution in Lower Granite and Little Goose Reservoirs. Zero-inflated regression predicted that the probability of prawn presence increased with decreasing water velocity and increasing depth. Negative binomial models predicted higher catch rates of prawns in deeper water and in closer proximity to dams. Temporally, prawn densities decreased slightly in the summer, likely due to the mortality of older individuals, and then increased in autumn and winter with the emergence and recruitment of young of the year. Seasonal length frequencies showed that distinct juvenile and adult size classes exist throughout the year, suggesting prawns live from 1 to 2 years and may be able to reproduce multiple times during their life. Most juvenile prawns become reproductive adults in 1 year, and peak reproduction occurs from late July through October. Mean fecundity (189 eggs) and reproductive output (11.9 %) are similar to that in their native range. The current use of deep habitats by prawns likely makes them unavailable to most predators in the reservoirs. The distribution and role of Siberian prawns in the lower Snake River food web will probably continue to change as the population grows and warrants continued monitoring and investigation.

WARMER URBAN CLIMATES FOR DEVELOPMENT OF GREEN SPACES IN NORTHERN SIBERIAN CITIES

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Igor Esau

2016-01-01

Full Text Available Modern human societies have accumulated considerable power to modify their environment and the earth’s system climate as the whole. The most significant environmental changes are found in the urbanized areas. This study considers coherent changes in vegetation productivity and land surface temperature (LST around four northern West Siberian cities, namely, Tazovsky, Nadym, Noyabrsk and Megion. These cities are located in tundra, forest-tundra, northern taiga and middle taiga bioclimatic zones correspondingly. Our analysis of 15 years (2000–2014 Moderate Resolution Imaging Spectroradiometer (MODIS data revealed significantly (1.3 °C to 5.2 °C warmer seasonally averaged LST within the urbanized territories than those of the surrounding landscapes. The magnitude of the urban LST anomaly corresponds to climates found 300–600 km to the South. In the climate change perspective, this magnitude corresponds to the expected regional warming by the middle or the end of the 21st century. Warmer urban climates, and specifically warmer upper soil layers, can support re-vegetation of the disturbed urban landscapes with more productive trees and tall shrubs. This afforestation is welcome by the migrant city population as it is more consistent with their traditional ecological knowledge. Survival of atypical, southern plant species encourages a number of initiatives and investment to introduce even broader spectrum of temperate blossoming trees and shrubs in urban landscapes. The unintended changes of the urban micro-climates in combination with knowledgeable urban planning could transform the Siberian pioneer settlements into places of belonging.

The problem of radiative depolarization in the 'Siberian Snake'

International Nuclear Information System (INIS)

Schwitters, R.

1979-01-01

As pointed out by Derbenev and Kondratenko and by the LEP Study Group, a 'Siberian Snake' may be a convenient method for providing longitudinally polarized beams at LEP. The author shows that at the highest LEP energies (approximately>60 GeV) synchrotron radiation with spin-flip may depolarize the beams. (Auth.)

Aging in the Soviet Union: A West Siberian Perspective.

Science.gov (United States)

Demitri, Shimkin

1989-01-01

Presents ethnographic observations on the aged and aging from six months' residence in Siberian industrial city. Describes interactions with medical personnel and reviews scanty literature in Soviet Union. Notes integration of aged in families and respect given to older persons. Discusses problems of elderly caused by hard living conditions,…

State Institutes of the Siberian Khanate and their Reflection in Archaeological Materials

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Sergey F. Tataurov

2016-09-01

Full Text Available The article is devoted to the analysis of the state institutes of the Siberian khanate and their reflection in the archaeological materials received during archaeological studying of sites of this period. There are considered processes of a class formation and formation of the stratified society. It is based on the criteria expressed in the works by known Siberian archaeologist N.P. Matveeva. In article the assessment is given to a level of development of productive forces of the population of the state, it is pointed out value of resettlement processes and development of trade relations both in the khanate, and with the adjacent states. The special attention is paid to emergence of the cities of the khanate, their role in centralization of the power, in development of interstate and interstate means of communication, trade. There is given appreciation of fortification systems of the cities and boundary towns of the khanate and is drawn the conclusion about participation in construction of the experts invited from Central Asia. There are analyzes questions of property and social stratification and reflection of this process in a funeral ceremony. The assumption become that as additional criteria of level of statehood of the Siberian khanate can act personal markers of the power – the press, headdresses, the weapon, etc. Criterion of level of centralization of the power for the Siberian khanate is the professional army which consisted from the tatars, hired groups and a militia. Fortification systems of protection of borders of the khanate in the south of Baraby and in Tarsky Priirtyshje also point to the high level of the khan’s power. In the conclusion it is said that archaeological materials fill missing information of written sources and their attraction in historical reconstruction of the tyurko-tatar statehood is one of indispensable conditions of similar researches.

Memoranda by A.P. Uspensky to the Council of Ministers of the Provisional Siberian government

OpenAIRE

Sukhanov Aleksandr

2015-01-01

This publication offers a previously unknown memoranda by representative of the diocesan assembly of deputies of the clergy and laity of the Tomsk diocese A. P. Uspensky, addressed to the Council of Ministers of the Provisional Siberian government in July 1918. A.P. Uspensky solicited for formation of the Ministry of confessions in the Provisional Siberian government. Memoranda are initiative documents to the Statute on the Chief Administration of religious denominations adopted by the Council...

North Atlantic Origin of Interdecadal variability of Siberian High

Science.gov (United States)

Kim, Seon-Hwa; Sung, Mi-Kyung; Kim, Baek-Min

2017-04-01

We suggest that the changes in the mean atmospheric circulation structure in the North Atlantic Ocean upstream region of Eurasian continent play an important role in the interdecadal variability of Siberian High (SH) through the modulation of Ural blocking frequency. Previous studies suggested that the interdecadal variability of SH is partly explained by the Arctic Oscillation. However, in this study, we emphasize the role of 'Warm Arctic and Cold Eurasia (WACE)', which is the second mode of winter surface air temperature variability over Eurasia. We show that the correlation between SH and WACE is high in general compared to that between SH and AO. However, the correlation between SH and WACE does not always exhibit high constant value. It shows a distinctive interdecadal fluctuation in the correlation. We found that this fluctuation in the correlation is due to the interdecadal fluctuation of the continental trough over the North Atlantic and the resultant strengthening of in-situ atmospheric baroclinicity. This accompanies changes in the transient vorticity flux divergence which leads to the downstream wave development and anomalous anticyclonic flow near Ural region. Obviously, the existence of anticyclonic flow over Ural region helps more frequent occurrence of Ural blocking and it is shown that this condition favors positive WACE event, which links to an intensified SH.

Being at the right time at the right place: interpreting the annual life cycle of Afro-Siberian red knots

NARCIS (Netherlands)

Leyrer, J.

2011-01-01

This thesis describes the possible selection pressures acting on survival and, indirectly, on reproduction of Afro-Siberian red knots Calidris canutus canutus while wintering and migrating. Afro-Siberian red knots are long-distance migrants. They travel between the West African wintering areas and

Siberian Snakes in high-energy accelerators

International Nuclear Information System (INIS)

Mane, S R; Shatunov, Yu M; Yokoya, K

2005-01-01

We review modern techniques to accelerate spin-polarized beams to high energy and to preserve their polarization in storage rings. Crucial to the success of such work is the use of so-called Siberian Snakes. We explain these devices and the reason for their necessity. Closely related to Snakes is the concept of 'spin rotators'. The designs and merits of several types of Snakes and spin rotators are examined. Theoretical work with Snakes and spin rotators, and experimental results from several storage rings, are reviewed, including the so-called Snake resonances. (topical review)

Deglacial sea level history of the East Siberian Sea and Chukchi Sea margins

Science.gov (United States)

Cronin, Thomas M.; O'Regan, Matt; Pearce, Christof; Gemery, Laura; Toomey, Michael; Semiletov, Igor

2017-01-01

Deglacial (12.8–10.7 ka) sea level history on the East Siberian continental shelf and upper continental slope was reconstructed using new geophysical records and sediment cores taken during Leg 2 of the 2014 SWERUS-C3 expedition. The focus of this study is two cores from Herald Canyon, piston core SWERUS-L2-4-PC1 (4-PC1) and multicore SWERUS-L2-4-MC1 (4-MC1), and a gravity core from an East Siberian Sea transect, SWERUS-L2-20-GC1 (20-GC1). Cores 4-PC1 and 20-GC were taken at 120 and 115 m of modern water depth, respectively, only a few meters above the global last glacial maximum (LGM;  ∼  24 kiloannum or ka) minimum sea level of  ∼  125–130 meters below sea level (m b.s.l.). Using calibrated radiocarbon ages mainly on molluscs for chronology and the ecology of benthic foraminifera and ostracode species to estimate paleodepths, the data reveal a dominance of river-proximal species during the early part of the Younger Dryas event (YD, Greenland Stadial GS-1) followed by a rise in river-intermediate species in the late Younger Dryas or the early Holocene (Preboreal) period. A rapid relative sea level rise beginning at roughly 11.4 to 10.8 ka ( ∼  400 cm of core depth) is indicated by a sharp faunal change and unconformity or condensed zone of sedimentation. Regional sea level at this time was about 108 m b.s.l. at the 4-PC1 site and 102 m b.s.l. at 20-GC1. Regional sea level near the end of the YD was up to 42–47 m lower than predicted by geophysical models corrected for glacio-isostatic adjustment. This discrepancy could be explained by delayed isostatic adjustment caused by a greater volume and/or geographical extent of glacial-age land ice and/or ice shelves in the western Arctic Ocean and adjacent Siberian land areas.

Deglacial sea level history of the East Siberian Sea and Chukchi Sea margins

Directory of Open Access Journals (Sweden)

T. M. Cronin

2017-09-01

Full Text Available Deglacial (12.8–10.7 ka sea level history on the East Siberian continental shelf and upper continental slope was reconstructed using new geophysical records and sediment cores taken during Leg 2 of the 2014 SWERUS-C3 expedition. The focus of this study is two cores from Herald Canyon, piston core SWERUS-L2-4-PC1 (4-PC1 and multicore SWERUS-L2-4-MC1 (4-MC1, and a gravity core from an East Siberian Sea transect, SWERUS-L2-20-GC1 (20-GC1. Cores 4-PC1 and 20-GC were taken at 120 and 115 m of modern water depth, respectively, only a few meters above the global last glacial maximum (LGM;  ∼  24 kiloannum or ka minimum sea level of  ∼  125–130 meters below sea level (m b.s.l.. Using calibrated radiocarbon ages mainly on molluscs for chronology and the ecology of benthic foraminifera and ostracode species to estimate paleodepths, the data reveal a dominance of river-proximal species during the early part of the Younger Dryas event (YD, Greenland Stadial GS-1 followed by a rise in river-intermediate species in the late Younger Dryas or the early Holocene (Preboreal period. A rapid relative sea level rise beginning at roughly 11.4 to 10.8 ka ( ∼  400 cm of core depth is indicated by a sharp faunal change and unconformity or condensed zone of sedimentation. Regional sea level at this time was about 108 m b.s.l. at the 4-PC1 site and 102 m b.s.l. at 20-GC1. Regional sea level near the end of the YD was up to 42–47 m lower than predicted by geophysical models corrected for glacio-isostatic adjustment. This discrepancy could be explained by delayed isostatic adjustment caused by a greater volume and/or geographical extent of glacial-age land ice and/or ice shelves in the western Arctic Ocean and adjacent Siberian land areas.

The evidence of apelin has the bidirectional effects on feeding regulation in Siberian sturgeon (Acipenser baerii).

Science.gov (United States)

Hao, Jin; Liu, Qing; Zhang, Xin; Wu, Yuanbing; Zhu, Jieyao; Qi, Jinwen; Tang, Ni; Wang, Shuyao; Wang, Hong; Chen, Defang; Li, Zhiqiong

2017-08-01

Apelin is a peptide, mainly produced in the brain, which participates in several physiologic effects. However, knowledge about the mechanism of appetite regulation in teleosts, including the role of apelin is not well understood. The aim of this study is to explore the effect of feeding status on the expression of apelin mRNA in the whole brain and the effects of injection of apelin on food intake in Siberian sturgeon (Acipenser baerii). In this study, we first cloned the apelin cDNA sequence of the Siberian sturgeon. We obtained a 1046-bp cDNA fragment, including a 237-bp open reading frame (ORF) that encoded 78 amino acids. Apelin was widely distributed in 11 tissues related to feeding regulation, with the highest expression in thewhole brain, followed by the spleen and trunk kidney. In addition, we measured the effects of periprandial (preprandial and postprandial) change, fasting and re-feeding on apelin mRNA expression in whole brain. The level of apelin mRNA was significantly decreased 1h after feeding. The results of the fasting experiment showed that the expression of apelin mRNA in the brain was significantly reduced after 1day of fasting but consistently increased throughout the 15-day food deprivation period. When the 15-day fasted fish were re-fed, apelin mRNA expression in the brain was significantly increased as compared to that of the control. These results suggest that apelin may play a bidirectional role in the regulation of food intake in the Siberian sturgeon. In order to further examine the effect of apelin on feeding regulation in Siberian sturgeons, acute and chronic intraperitoneal (i.p.) injection experiments were performed and food intakes were recorded. Results showed that acute i.p. injection of apelin-13 reduced food intake, however, chronic i.p. injection apelin-13 increased the food intake for 7days in Siberian sturgeons. In conclusion, our results show that apelin has a bidirectional effect on feeding regulation in Siberian sturgeons

Optical properties of Colored Dissolved Organic Matter (CDOM) on the East Siberian shelf

Science.gov (United States)

Semiletov, I. P.; Pugach, S.; Pipko, I.

2015-12-01

The Great Siberian Rivers integrate meteorological and hydrological changes in their watersheds and play a significant role in the physical and biogeochemical regime of the Arctic Ocean. Given the magnitude of Siberian Arctic dissolved organic matter (DOM) export and the uncertain extent to which it is degraded to greenhouse gases, intensified studies to better quantify and understand this large carbon pool and processes acting on it are urgently needed. The East Siberian Arctic shelf is characterized by the highest rate of coastal erosion and significant volume of the riverine discharge which derived terrigenous DOM in the Arctic Ocean. DOM plays a significant role in freshwater and marine aquatic ecosystems including its effects on nutrients and carbon cycling. The colored fraction of DOM, CDOM, directly affects the quantity and spectral quality of available light, thereby impaction both primary production and UV exposure in aquatic ecosystems. Since 2003 we measure CDOM in the East Siberian Arctic Seas (ESAS) in situ using the WETStar fluorometer which doesn't require prefiltration of sample. Combined analysis of CDOM and DOC data obtained at near-annual basis in (2003-2011) demonstrate a high degree of correlation between these parameters. For all the measured samples taken during the ISSS cruises (2003, 2004, 2005, 2008, 2011), there is an overall linear relationship between DOC concentration, CDOM, and salinity. Here we report the spatial-time variability of river-borne DOM in the ESAS using CDOM as a proxy parameter. Higher absorption coefficients (a254), spectral slope parameter over range 275-295 nm (S275-295) and CDOM concentrations reflect the dominant contribution of terrigenous DOM. It is shown that the attenuation light coefficient in the shallow ESAS is mostly determined by riverine CDOM.

Evaluation of methane emissions from West Siberian wetlands based on inverse modeling

Energy Technology Data Exchange (ETDEWEB)

Kim, H-S; Inoue, G [Research Institute for Humanity and Nature, 457-4 Motoyama, Kamigamo, Kita-ku, Kyoto 603-8047 (Japan); Maksyutov, S; Machida, T [National Institute for Environmental Studies, 16-2 Onogawa, Tsukuba, Ibaraki 305-8506 (Japan); Glagolev, M V [Lomonosov Moscow State University, GSP-1, Leninskie Gory, Moscow 119991 (Russian Federation); Patra, P K [Research Institute for Global Change/JAMSTEC, 3173-25 Showa-cho, Kanazawa-ku, Yokohama, Kanagawa 236-0001 (Japan); Sudo, K, E-mail: heonsook.kim@gmail.com [Nagoya University, Furo-cho, Chikusa-ku, Nagoya 464-8601 (Japan)

2011-07-15

West Siberia contains the largest extent of wetlands in the world, including large peat deposits; the wetland area is equivalent to 27% of the total area of West Siberia. This study used inverse modeling to refine emissions estimates for West Siberia using atmospheric CH{sub 4} observations and two wetland CH{sub 4} emissions inventories: (1) the global wetland emissions dataset of the NASA Goddard Institute for Space Studies (the GISS inventory), which includes emission seasons and emission rates based on climatology of monthly surface air temperature and precipitation, and (2) the West Siberian wetland emissions data (the Bc7 inventory), based on in situ flux measurements and a detailed wetland classification. The two inversions using the GISS and Bc7 inventories estimated annual mean flux from West Siberian wetlands to be 2.9 {+-} 1.7 and 3.0 {+-} 1.4 Tg yr{sup -1}, respectively, which are lower than the 6.3 Tg yr{sup -1} predicted in the GISS inventory, but similar to those of the Bc7 inventory (3.2 Tg yr{sup -1}). The well-constrained monthly fluxes and a comparison between the predicted CH{sub 4} concentrations in the two inversions suggest that the Bc7 inventory predicts the seasonal cycle of West Siberian wetland CH{sub 4} emissions more reasonably, indicating that the GISS inventory predicts more emissions from wetlands in northern and middle taiga.

Memoranda by A.P. Uspensky to the Council of Ministers of the Provisional Siberian government

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Sukhanov Aleksandr

2015-06-01

Full Text Available This publication offers a previously unknown memoranda by representative of the diocesan assembly of deputies of the clergy and laity of the Tomsk diocese A. P. Uspensky, addressed to the Council of Ministers of the Provisional Siberian government in July 1918. A.P. Uspensky solicited for formation of the Ministry of confessions in the Provisional Siberian government. Memoranda are initiative documents to the Statute on the Chief Administration of religious denominations adopted by the Council of Ministers of the Russian government on December 27, 1918.

Mg-Fe Isotope Systems of Mantle Xenoliths: Constrains on the Evolution of Siberian Craton

Science.gov (United States)

An, Y.; Kiseeva, E. S.; Sobolev, N. V.; Zhang, Z.

2017-12-01

Mantle xenoliths bring to the surface a variety of lithologies (dunites, lherzolites, harzburgites, wehrlites, eclogites, pyroxenites, and websterites) and represent snapshots of the geochemical processes that occur deep within the Earth. Recent improvements in the precision of the MC-ICP-MS measurements have allowed us to expand the amount of data on Mg and Fe isotopes for mantle-derived samples. For instance, to constrain the isotopic composition of the Earth based on the study of spinel and garnet peridotites (An et al., 2017; Teng et al., 2010), to trace the origin and to investigate the isotopic fractionation mechanism during metamorphic process using cratonic or orogenic eclogites (Li et al., 2011; Wang et al., 2012) and to reveal the metasomatism-induced mantle heterogeneity by pyroxenites (Hu et al., 2016). Numerous multi-stage modification events and mantle layering are detected in the subcontinental lithospheric mantle under the Siberian craton (Ashchepkov et al., 2008a; Sobolev et al., 1975, etc). Combined analyses of Mg and Fe isotopic systems could provide new constraints on the formation and evolution of the ancient cratonic mantle. In order to better constrain the magnitude and mechanism of inter-mineral Mg and Fe isotopic fractionations at high temperatures, systematic studies of mantle xenoliths are needed. For example, theoretical calculations and natural samples measurements have shown that large equilibrium Mg isotope fractionations controlled by the difference in coordination number of Mg among minerals could exist (Huang et al., 2013; Li et al., 2011). Thus, the Mg isotope geothermometer could help us trace the evolution history of ancient cratons. In this study we present Mg and Fe isotopic data for whole rocks and separated minerals (clinopyroxene (cpx) and garnet (grt)) from different types of mantle xenoliths (garnet pyroxenites, eclogites, grospydites and garnet peridotites) from a number of kimberlite pipes in Siberian craton (Udachnaya

'Abd al-Rashid Ibrahim's Biographical Dictionary on Siberian Islamic Scholars

NARCIS (Netherlands)

Bustanov, A.K.

2014-01-01

This article is a publication of facsimiles and annotated English translations of two versions of a biographical dictionary of Siberian Islamic scholars. The work written by ‘Abd al-Rashīd Ibrāhīm deserves serious attention from scholars because it opens up a world of intellectual life among the

Field of a helical Siberian Snake

Energy Technology Data Exchange (ETDEWEB)

Luccio, A. [Brookhaven National Lab., Upton, NY (United States)

1995-02-01

To preserve the spin polarization of a beam of high energy protons in a circular accelerator, magnets with periodic magnetic field, called Siberian Snakes are being used. Recently, it was proposed to build Siberian Snakes with superconducting helical dipoles. In a helical, or twisted dipole, the magnetic field is perpendicular to the axis of the helix and rotates around it as one proceeds along the magnet. In an engineering study of a 4 Tesla helical snake, the coil geometry is derived, by twisting, from the geometry of a cosine superconducting dipole. While waiting for magnetic measurement data on such a prototype, an analytical expression for the field of the helice is important, to calculate the particle trajectories and the spin precession in the helix. This model will also allow to determine the optical characteristics of the snake, as an insertion in the lattice of the accelerator. In particular, one can calculate the integrated multipoles through the magnet and the equivalent transfer matrix. An expression for the field in the helix body, i.e., excluding the fringe field was given in a classical paper. An alternate expression can be found by elaborating on the treatment of the field of a transverse wiggler obtained under the rather general conditions that the variables are separable. This expression exactly satisfies Maxwell`s div and curl equations for a stationary field, {del} {center_dot} B = 0, {del} x B = 0. This approach is useful in that it will allow one to use much of the work already done on the problem of inserting wigglers and undulators in the lattice of a circular accelerator.

Respiratory Pathways Reconstructed by Multi-Omics Analysis in Melioribacter roseus, Residing in a Deep Thermal Aquifer of the West-Siberian Megabasin

Science.gov (United States)

Gavrilov, Sergey; Podosokorskaya, Olga; Alexeev, Dmitry; Merkel, Alexander; Khomyakova, Maria; Muntyan, Maria; Altukhov, Ilya; Butenko, Ivan; Bonch-Osmolovskaya, Elizaveta; Govorun, Vadim; Kublanov, Ilya

2017-01-01

Melioribacter roseus, a representative of recently proposed Ignavibacteriae phylum, is a metabolically versatile thermophilic bacterium, inhabiting subsurface biosphere of the West-Siberian megabasin and capable of growing on various substrates and electron acceptors. Genomic analysis followed by inhibitor studies and membrane potential measurements of aerobically grown M. roseus cells revealed the activity of aerobic respiratory electron transfer chain comprised of respiratory complexes I and IV, and an alternative complex III. Phylogeny reconstruction revealed that oxygen reductases belonged to atypical cc(o/b)o3-type and canonical cbb3–type cytochrome oxidases. Also, two molybdoenzymes of M. roseus were affiliated either with Ttr or Psr/Phs clades, but not with typical respiratory arsenate reductases of the Arr clade. Expression profiling, both at transcripts and protein level, allowed us to assign the role of the terminal respiratory oxidase under atmospheric oxygen concentration for the cc(o/b)o3 cytochrome oxidase, previously proposed to serve for oxygen detoxification only. Transcriptomic analysis revealed the involvement of both molybdoenzymes of M. roseus in As(V) respiration, yet differences in the genomic context of their gene clusters allow to hypothesize about their distinct roles in arsenate metabolism with the ‘Psr/Phs’-type molybdoenzyme being the most probable candidate respiratory arsenate reductase. Basing on multi-omics data, the pathways for aerobic and arsenate respiration were proposed. Our results start to bridge the vigorously increasing gap between homology-based predictions and experimentally verified metabolic processes, what is especially important for understudied microorganisms of novel lineages from deep subsurface environments of Eurasia, which remained separated from the rest of the biosphere for several geological periods. PMID:28713355

Respiratory Pathways Reconstructed by Multi-Omics Analysis in Melioribacter roseus, Residing in a Deep Thermal Aquifer of the West-Siberian Megabasin

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Sergey Gavrilov

2017-06-01

Full Text Available Melioribacter roseus, a representative of recently proposed Ignavibacteriae phylum, is a metabolically versatile thermophilic bacterium, inhabiting subsurface biosphere of the West-Siberian megabasin and capable of growing on various substrates and electron acceptors. Genomic analysis followed by inhibitor studies and membrane potential measurements of aerobically grown M. roseus cells revealed the activity of aerobic respiratory electron transfer chain comprised of respiratory complexes I and IV, and an alternative complex III. Phylogeny reconstruction revealed that oxygen reductases belonged to atypical cc(o/bo3-type and canonical cbb3–type cytochrome oxidases. Also, two molybdoenzymes of M. roseus were affiliated either with Ttr or Psr/Phs clades, but not with typical respiratory arsenate reductases of the Arr clade. Expression profiling, both at transcripts and protein level, allowed us to assign the role of the terminal respiratory oxidase under atmospheric oxygen concentration for the cc(o/bo3 cytochrome oxidase, previously proposed to serve for oxygen detoxification only. Transcriptomic analysis revealed the involvement of both molybdoenzymes of M. roseus in As(V respiration, yet differences in the genomic context of their gene clusters allow to hypothesize about their distinct roles in arsenate metabolism with the ‘Psr/Phs’-type molybdoenzyme being the most probable candidate respiratory arsenate reductase. Basing on multi-omics data, the pathways for aerobic and arsenate respiration were proposed. Our results start to bridge the vigorously increasing gap between homology-based predictions and experimentally verified metabolic processes, what is especially important for understudied microorganisms of novel lineages from deep subsurface environments of Eurasia, which remained separated from the rest of the biosphere for several geological periods.

Siberian Chemical Combine laboratory project work plan, fiscal year 1999

International Nuclear Information System (INIS)

Morgado, R.E.; Acobyan, R.; Shropsire, R.

1998-01-01

The Siberian Chemical Combine (SKhK), Laboratory Project Work Plan (Plan) is intended to assist the US Laboratory Project Team, and Department of Energy (DOE) staff with the management of the FY99 joint material protection control and accounting program (MPC and A) for enhancing nuclear material safeguards within the Siberian Chemical Combine. The DOE/Russian/Newly Independent States, Nuclear Material Task Force, uses a project work plan document for higher-level program management. The SKhK Plan is a component of the Russian Defense related Sites' input to that document. In addition, it contains task descriptions and a Gantt Chart covering the FY99 time-period. This FY99 window is part of a comprehensive, Project Status Gantt Chart for tasking and goal setting that extends to the year 2003. Secondary and tertiary levels of detail are incorporated therein and are for the use of laboratory project management. The SKhK Plan is a working document, and additions and modifications will be incorporated as the MPC and A project for SKhK evolves

The Potential Impact of CO2 and Air Temperature Increases on Krummholz's Transformation into Arborescent Form in the Southern Siberian Mountains

Science.gov (United States)

Kharuk, V. I.; Dvinskaya, M. L.; Im, S. T.; Ranson, K. J.

2011-01-01

Trees in the southern Siberian Mountains forest-tundra ecotone have considerably increased their radial and apical growth increments during the last few decades. This leads to the widespread vertical transformation of mat and prostrate krummholz forms of larch (Larix sibirica Ledeb) and Siberian pine (Pinus sibirica Du Tour). An analysis of the radial growth increments showed that these transformations began in the mid-1980s. Larch showed a greater resistance to the harsh alpine environment and attained a vertical growth form in areas where Siberian pine is still krummholz. Upper larch treeline is about 10 m higher than Siberian pine treeline. Observed apical and radial growth increment increases were correlated with CO2 concentration (r = 0.83-0.87), summer temperatures (r = 0.55-0.64), and "cold period" (i.e. September-May) air temperatures (r = 0.36-0.37). Positive correlation between growth increments and winter precipitation was attributed to snow cover protection for trees during wintertime.

The effect of thermal shock on morphological characteristics of blood cells in Siberian sturgeon (Acipenser baerii triploids

Directory of Open Access Journals (Sweden)

Teresa Wlasow

2011-01-01

Full Text Available The aim of the study was to evaluate the effect of thermal shock on morphotic blood elements in Siberian sturgeon Acipenser baerii triploids. The thermal shock (37 °C for 2 min was applied in the 18th min after fertilization. Blood was sampled from parallel cultured ten triploids and ten diploids on day 70 after hatching. Ploidy was assessed with the cytogenetic method and measurements of cellular nuclei. In the blood of triploids, significant dominance of immature red blood cells, erythrocytes with a displaced nucleus, microcytes and erythroplastids were observed. The blood of triploids was also characterized by a reduced number of lymphocytes. The percentage of neutrophil and eosinophil granulocytes was elevated; increased share of neutrophil granulocytes with a 4-, 5- or 6-segmented nucleus and eosinophil granulocytes with a nucleus consisting of three and more segments was observed. Disturbances in the picture of red blood cells can be considered as an expression of intensification of end-stage changes in triploids. The response to these changes in the blood of triploid Siberian sturgeon is an increase in the share of polymorphonuclear PMN, cells counted as microphages. Frequent presence of immature red blood cells in triploid Siberian sturgeon is a process that aims at counterbalancing the loss among these blood cells. It is the first report on morphological changes and proportions among blood cells in triploid Siberian sturgeon.

Impact of climate change on radial growth of Siberian spruce and Scots pine in North-western Russia

Directory of Open Access Journals (Sweden)

Lopatin E

2007-01-01

Full Text Available When adapting forest management practices to a changing environment, it is very important to understand the response of an unmanaged natural forest to climate change. The method used to identify major climatic factors influencing radial growth of Siberian spruce and Scots pine along a latitudinal gradient in north-western Russia is dendroclimatic analysis. A clear increasing long-term trend was identified in air temperature and precipitation. During the last 20 years, all meteorological stations experienced temperature increases, and 40 years ago precipitation began to increase. This is shown by the radial increment of Siberian spruce and Scots pine. Therefore, climate change could partly explain the increased forest productivity. The total variance explained by temperature varied from 22% to 41% and precipitation from 19% to 38%. The significant climatic parameters for radial increment in Komi Republic were identified, and the relation between temperature and precipitation in explained variance changes over time for Siberian spruce.

Paleo-eskimo mtDNA genome reveals matrilineal discontinuity in Greenland

DEFF Research Database (Denmark)

Gilbert, Marcus Thomas Pius; Kivisild, Toomas; Grønnow, Bjarne

2008-01-01

a mitochondrial genome from a Paleo-Eskimo human by using 3400-to 4500-year-old frozen hair excavated from an early Greenlandic Saqqaq settlement. The sample is distinct from modern Native Americans and Neo-Eskimos, falling within haplogroup D2a1, a group previously observed among modern Aleuts and Siberian......The Paleo-Eskimo Saqqaq and Independence I cultures, documented from archaeological remains in Northern Canada and Greenland, represent the earliest human expansion into the New World's northern extremes. However, their origin and genetic relationship to later cultures are unknown. We sequenced...

“The History and Culture of the Western Siberian Tatars”: Some Notes about the Book

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Z.A. Tychinskikh

2017-03-01

Full Text Available The article presents a collective monograph “The History and Culture of the Western Siberian Tatars” published in 2015 by Sh. Marjani Institute of History of Tatarstan Academy of Sciences. This book is the first academic work, which integrated and multidimensionally accumulated almost all materials (of demography, genetics, linguistics, history, ethnography and ethnosociology available in modern science related to the formation and development of the Turkic-Tatar population of Western Siberia from ancient times to the early 21st century. The monograph is distinguished by the ethnoterritorial approach: the authors focus on the entire Turkic-Tatar population of Western Siberia, which was formed in different historical periods and includes two main components – population called in ethnographic science the “Siberian Tatars” and the group of Tatars who migrated (mainly from the Volga region to the Siberian region during the 16th–20th centuries. The book contains a large number of illustrations, which were collected during the expeditions of the authors in the rural settlements of the Tatars of Western Siberia, during archaeological excavations, in numerous archives and museums in Russia. Many photos are presented for the first time.

99.9% Spin-Flip Efficiency in the Presence of a Strong Siberian Snake

International Nuclear Information System (INIS)

Morozov, V.S.; Blinov, B.B.; Etienne, Z.B.; Krisch, A.D.; Leonova, M.A.; Lin, A.M.T.; Lorenzon, W.; Peters, C.C.; Sivers, D.W.; Wong, V.K.; Yonehara, K.; Anferov, V. A.; Schwandt, P.; Stephenson, E.J.; Przewoski, B. von; Sato, H.

2003-01-01

We recently studied the spin-flipping efficiency of an rf-dipole magnet using a 120-MeV horizontally polarized proton beam stored in the Indiana University Cyclotron Facility Cooler Ring, which contained a full Siberian snake. We flipped the spin by ramping the rf dipole's frequency through an rf-induced depolarizing resonance. By adiabatically turning on the rf dipole, we minimized the beam loss, while preserving almost all of the beam's polarization. After optimizing the frequency ramp parameters, we used up to 400 multiple spin flips to measure a spin-flip efficiency of 99.93 ± 0.02%. This result indicates that spin flipping should be possible in very-high-energy polarized storage rings, where Siberian snakes are certainly needed and only dipole rf-flipper magnets are practical

ANALYSIS OF SURGERIES DUE TO PULMONARY TUBERCULOSIS IN SIBERIAN AND FAR EASTERN FEDERAL DISTRICTS

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N. G. Grischenko

2017-01-01

Full Text Available The pool of TB infection in Siberian and Far Eastern Federal Districts is still full of complicated cases: among those being followed up by TB dispensaries, there are many patients suffering from fibrous cavernous TB as well as any clinical forms of tuberculosis with multiple drug resistance.The situation can be improved through activated use of surgical treatment (along with the other interventions, first of all among those mentioned above. There is significant international and Russian experience of managing tuberculosis patients using surgery as a part of comprehensive treatment.Surgical services of special medical units in the regions of Siberian and Far Eastern Federal Districts possess certain potential to increase the number surgeries for such complicated cases. 

PALEOARCHEAN MAFIC ROCKS OF THE SOUTHWESTERN SIBERIAN CRATON: PRELIMINARY GEOCHRONOLOGY AND GEOCHEMICAL CHARACTERIZATION

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A. V. Ivanov

2017-01-01

Full Text Available The Siberian craton consists of Archean blocks, which were welded up into the same large unit by ca 1.9 Ga [Gladkochub et al., 2006; Rojas-Agramonte et al., 2011]. The history of the constituent Archean blocks is mosaic because of limited number of outcrops, insufficient sampling coverage because of their location in remote regions and deep forest and difficulties with analytical studies of ancient rocks, which commonly underwent metamorphic modifications and secondary alterations. In this short note, we report data on discovery of unusual for Archean mafic rocks of ultimate fresh appearance. These rocks were discovered within southwestern Siberian craton in a region near a boundary between Kitoy granulites of the Sharyzhalgai highgrade metamorphic complex and Onot green-schist belt (Fig. 1. Here we present preliminary data on geochronology of these rocks and provide their geochemical characterization.

VGF-derived peptide, TLQP-21, regulates food intake and body weight in Siberian hamsters.

Science.gov (United States)

Jethwa, Preeti H; Warner, Amy; Nilaweera, Kanishka N; Brameld, John M; Keyte, John W; Carter, Wayne G; Bolton, Neil; Bruggraber, Michael; Morgan, Peter J; Barrett, Perry; Ebling, Francis J P

2007-08-01

The Siberian hamster survives winter by decreasing food intake and catabolizing abdominal fat reserves, resulting in a sustained, profound loss of body weight. VGF gene expression is photoperiodically regulated in the hypothalamus with significantly higher expression in lean Siberian hamsters. The aim of this study was to investigate the role of VGF in regulating these seasonal cycles by determining the effects of a VGF-derived peptide (TLQP-21) on food intake and body weight. Acute intracerebroventricular administration of TLQP-21 decreased food intake, and chronic treatment caused a sustained reduction in food intake and body weight and decreased abdominal fat depots. Behavioral analysis revealed that TLQP-21 reduced meal size but not the frequency of feeding bouts, suggesting a primary action on satiety. Hamsters treated with TLQP-21 lost a similar amount of weight as a pair-fed group in which food intake was matched to that of the TLQP-21-treated group. Central or peripheral treatment with TLQP-21 did not produce a significant effect on resting metabolic rate. We conclude that the primary action of TLQP-21 is to decrease food intake rather than increase energy expenditure. TLQP-21 treatment caused a decrease in UCP-1 mRNA in brown adipose tissue, but hypothalamic expression of orexigenic and anorexigenic neuropeptide genes remained unchanged after TLQP-21 treatment, although compensatory increases in NPY and AgRP mRNA were observed in the pair-fed hamsters. The effects of TLQP-21 administration are similar to those in hamsters in short days, suggesting that increased VGF activity may contribute to the hypophagia that underlies the seasonal catabolic state.

Adrenal hormones mediate melatonin-induced increases in aggression in male Siberian hamsters (Phodopus sungorus).

Science.gov (United States)

Demas, Gregory E; Polacek, Kelly M; Durazzo, Alfredo; Jasnow, Aaron M

2004-12-01

Among the suite of seasonal adaptations displayed by nontropical rodents, some species demonstrate increased territorial aggression in short compared with long day lengths despite basal levels of testosterone. The precise physiological mechanisms mediating seasonal changes in aggression, however, remain largely unknown. The goal of the present study was to examine the role of melatonin, as well as adrenal hormones, in the regulation of seasonal aggression in male Siberian hamsters (Phodopus sungorus). In Experiment 1, male Siberian hamsters received either daily (s.c.) injections of melatonin (15 microg/day) or saline 2 h before lights out for 10 consecutive days. In Experiment 2, hamsters received adrenal demedullations (ADMEDx), whereas in Experiment 3 animals received adrenalectomies (ADx); control animals in both experiments received sham surgeries. Animals in both experiments subsequently received daily injections of melatonin or vehicle as in Experiment 1. Animals in all experiments were tested using a resident-intruder model of aggression. In Experiment 1, exogenous melatonin treatment increased aggression compared with control hamsters. In Experiment 2, ADMEDx had no effect on melatonin-induced aggression. In Experiment 3, the melatonin-induced increase in aggression was significantly attenuated by ADx. Collectively, the results of the present study demonstrate that short day-like patterns of melatonin increase aggression in male Siberian hamsters and suggest that increased aggression is due, in part, to changes in adrenocortical steroids.

Construction and Analysis of Siberian Tiger Bacterial Artificial Chromosome Library with Approximately 6.5-Fold Genome Equivalent Coverage

Science.gov (United States)

Liu, Changqing; Bai, Chunyu; Guo, Yu; Liu, Dan; Lu, Taofeng; Li, Xiangchen; Ma, Jianzhang; Ma, Yuehui; Guan, Weijun

2014-01-01

Bacterial artificial chromosome (BAC) libraries are extremely valuable for the genome-wide genetic dissection of complex organisms. The Siberian tiger, one of the most well-known wild primitive carnivores in China, is an endangered animal. In order to promote research on its genome, a high-redundancy BAC library of the Siberian tiger was constructed and characterized. The library is divided into two sub-libraries prepared from blood cells and two sub-libraries prepared from fibroblasts. This BAC library contains 153,600 individually archived clones; for PCR-based screening of the library, BACs were placed into 40 superpools of 10 × 384-deep well microplates. The average insert size of BAC clones was estimated to be 116.5 kb, representing approximately 6.46 genome equivalents of the haploid genome and affording a 98.86% statistical probability of obtaining at least one clone containing a unique DNA sequence. Screening the library with 19 microsatellite markers and a SRY sequence revealed that each of these markers were present in the library; the average number of positive clones per marker was 6.74 (range 2 to 12), consistent with 6.46 coverage of the tiger genome. Additionally, we identified 72 microsatellite markers that could potentially be used as genetic markers. This BAC library will serve as a valuable resource for physical mapping, comparative genomic study and large-scale genome sequencing in the tiger. PMID:24608928

Sources and characteristics of terrestrial carbon in Holocene-scale sediments of the East Siberian Sea

Science.gov (United States)

Keskitalo, Kirsi; Tesi, Tommaso; Bröder, Lisa; Andersson, August; Pearce, Christof; Sköld, Martin; Semiletov, Igor P.; Dudarev, Oleg V.; Gustafsson, Örjan

2017-09-01

Thawing of permafrost carbon (PF-C) due to climate warming can remobilise considerable amounts of terrestrial carbon from its long-term storage to the marine environment. PF-C can be then be buried in sediments or remineralised to CO2 with implications for the carbon-climate feedback. Studying historical sediment records during past natural climate changes can help us to understand the response of permafrost to current climate warming. In this study, two sediment cores collected from the East Siberian Sea were used to study terrestrial organic carbon sources, composition and degradation during the past ˜ 9500 cal yrs BP. CuO-derived lignin and cutin products (i.e., compounds solely biosynthesised in terrestrial plants) combined with δ13C suggest that there was a higher input of terrestrial organic carbon to the East Siberian Sea between ˜ 9500 and 8200 cal yrs BP than in all later periods. This high input was likely caused by marine transgression and permafrost destabilisation in the early Holocene climatic optimum. Based on source apportionment modelling using dual-carbon isotope (Δ14C, δ13C) data, coastal erosion releasing old Pleistocene permafrost carbon was identified as a significant source of organic matter translocated to the East Siberian Sea during the Holocene.

Green synthesis of multifunctional silver and gold nanoparticles from the oriental herbal adaptogen: Siberian ginseng

Directory of Open Access Journals (Sweden)

Abbai R

2016-07-01

Full Text Available Ragavendran Abbai,1,* Ramya Mathiyalagan,1,* Josua Markus,1 Yeon-Ju Kim,2 Chao Wang,2 Priyanka Singh,2 Sungeun Ahn,2 Mohamed El-Agamy Farh,2 Deok Chun Yang1,2 1Ginseng Bank, Graduate School of Biotechnology, 2Department of Oriental Medicinal Biotechnology, College of Life Sciences, Kyung Hee University, Yongin, Republic of Korea *These authors contributed equally to this work Abstract: Pharmacologically active stem of the oriental herbal adaptogen, Siberian ginseng, was employed for the ecofriendly synthesis of Siberian ginseng silver nanoparticles (Sg-AgNPs and Siberian ginseng gold nanoparticles (Sg-AuNPs. First, for metabolic characterization of the sample, liquid chromatography-tandem mass spectrometry analysis (indicated the presence of eleutherosides A and E, total phenol content, and total reducing sugar were analyzed. Second, the water extract of the sample mediated the biological synthesis of both Sg-AgNPs and Sg-AuNPs that were crystalline face-centered cubical structures with a Z-average hydrodynamic diameter of 126 and 189 nm, respectively. Moreover, Fourier transform infrared analysis indicated that proteins and aromatic hydrocarbons play a key role in the formation and stabilization of Sg-AgNPs, whereas phenolic compounds accounted for the synthesis and stability of Sg-AuNPs. 3-(4,5-Dimethyl-2-thiazolyl-2,5-diphenyl-2H tetrazolium bromide (MTT assay determined that Sg-AgNPs conferred strong cytotoxicity against MCF7 (human breast cancer cell line and was only slightly toxic to HaCaT (human keratinocyte cell line at 10 µg·mL-1. However, Sg-AuNPs did not display cytotoxic effects against both of the cell lines. The disc diffusion assay indicated a dose-dependent increase in the zone of inhibition of Staphylococcus aureus (ATCC 6538, Bacillus anthracis (NCTC 10340, Vibrio parahaemolyticus (ATCC 33844, and Escherichia coli (BL21 treated with Sg-AgNPs, whereas Sg-AuNPs did not show inhibitory activity. In addition, the 2,2-diphenyl-1

Will the Three Gorges Dam affect the underwater light climate of Vallisneria spiralis L. and food habitat of Siberian crane in Poyang Lake?

NARCIS (Netherlands)

Wu, G.; Leeuw, de J.; Skidmore, A.K.; Prins, H.H.T.; Best, E.P.H.; Liu, Y.

2009-01-01

Almost 95% of the entire population of the Siberian crane (Grus leucogeranus) winter in Poyang Lake, China, where they forage on the tubers of the submerged aquatic macrophyte Vallisneria spiralis. The Three Gorges Dam on the Yangtze River may possibly affect this food source of the Siberian crane

New paleomagnetic poles from Arctic Siberia support Indian Ocean option for the Neoproterozoic APWP of the Siberian craton.

Science.gov (United States)

Pasenko, A.; Malyshev, S. V.

2017-12-01

Quantity and quality of paleomagnetic poles obtained so far for Neoproterozoic of Siberia are still insufficient even to outline the general trend of APWP of Siberia for this huge and very interesting time interval. Meanwhile, the solution of this problem is crucial for choice of polarity option for Siberian proterozoic paleomagnetic directions, for construction and testing of world paleotectonic and paleogeographic reconstructions. For example, whether or not the Siberian craton could be connected with Laurentia within the supercontinent Rodinia depends directly on paleomagnetic polarity option choice, which , in its turn, is determined by either we choose for neoproterozoic drift of Siberian paleomagnetic poles Pacific ocean trend [Smethurst et al., 1998] or Indian ocean [Pavlov et al., 2015] trend. To advance in solution of this problem we have carried out the paleomagnetic investigations of several sedimentary sections and sills of Arctic Siberia considered to be meso-neoproterozoic in age. In particular we have studied the terrigenous Udza and Unguohtah Formations and basic sills of the Udzha Uplift; the carbonate Khaipakh Formation of the Olenek Uplift; the carbonate Burovaya Formation of the Turukhansk Uplift; basic sills of the Kparaulakh Mountains.In this report we present the paleomagnetic poles obtained, discuss their bearing on construction of the adequate Siberian neoproterozoic APWP and show that our new data rather support the Indian ocean option.This research were supported by Grant from RF President #MK-739.2017.5

Paleocene-Eocene warming and biotic response in the epicontinental West Siberian Sea

NARCIS (Netherlands)

Frieling, Joost|info:eu-repo/dai/nl/338017909; Iakovleva, Alina I.; Reichart, Gert Jan|info:eu-repo/dai/nl/165599081; Aleksandrova, Galina N.; Gnibidenko, Zinaida N.; Schouten, Stefan|info:eu-repo/dai/nl/137124929; Sluijs, Appy|info:eu-repo/dai/nl/311474748

2014-01-01

We present a Paleocene-Eocene (ca. 60-52 Ma) sea-surface temperature record from sediments deposited in the epicontinental West Siberian Sea. TEX86 paleothermometry indicates long-term late Paleocene (~17 °C ca. 59 Ma) to early Eocene (26 °C at 52 Ma) sea-surface warming, consistent with trends

Mitochondrial cytochrome b sequence variations and population structure of Siberian chipmunk (Tamias sibiricus) in Northeastern Asia and population substructure in South Korea.

Science.gov (United States)

Lee, Mu-Yeong; Lissovsky, Andrey A; Park, Sun-Kyung; Obolenskaya, Ekaterina V; Dokuchaev, Nikolay E; Zhang, Ya-Ping; Yu, Li; Kim, Young-Jun; Voloshina, Inna; Myslenkov, Alexander; Choi, Tae-Young; Min, Mi-Sook; Lee, Hang

2008-12-31

Twenty-five chipmunk species occur in the world, of which only the Siberian chipmunk, Tamias sibiricus, inhabits Asia. To investigate mitochondrial cytochrome b sequence variations and population structure of the Siberian chipmunk in northeastern Asia, we examined mitochondrial cytochrome b sequences (1140 bp) from 3 countries. Analyses of 41 individuals from South Korea and 33 individuals from Russia and northeast China resulted in 37 haplotypes and 27 haplotypes, respectively. There were no shared haplotypes between South Korea and Russia--northeast China. Phylogenetic trees and network analysis showed 2 major maternal lineages for haplotypes, referred to as the S and R lineages. Haplotype grouping in each cluster was nearly coincident with its geographic affinity. In particular, 3 distinct groups were found that mostly clustered in the northern, central and southern parts of South Korea. Nucleotide diversity of the S lineage was twice that of lineage R. The divergence between S and R lineages was estimated to be 2.98-0.98 Myr. During the ice age, there may have been at least 2 refuges in South Korea and Russia--northeast China. The sequence variation between the S and R lineages was 11.3% (K2P), which is indicative of specific recognition in rodents. These results suggest that T. sibiricus from South Korea could be considered a separate species. However, additional information, such as details of distribution, nuclear genes data or morphology, is required to strengthen this hypothesis.

Toward an implicit measure of emotions: ratings of abstract images reveal distinct emotional states.

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Bartoszek, Gregory; Cervone, Daniel

2017-11-01

Although implicit tests of positive and negative affect exist, implicit measures of distinct emotional states are scarce. Three experiments examined whether a novel implicit emotion-assessment task, the rating of emotion expressed in abstract images, would reveal distinct emotional states. In Experiment 1, participants exposed to a sadness-inducing story inferred more sadness, and less happiness, in abstract images. In Experiment 2, an anger-provoking interaction increased anger ratings. In Experiment 3, compared to neutral images, spider images increased fear ratings in spider-fearful participants but not in controls. In each experiment, the implicit task indicated elevated levels of the target emotion and did not indicate elevated levels of non-target negative emotions; the task thus differentiated among emotional states of the same valence. Correlations also supported the convergent and discriminant validity of the implicit task. Supporting the possibility that heuristic processes underlie the ratings, group differences were stronger among those who responded relatively quickly.

Paleocene–Eocene warming and biotic response in the epicontinental West Siberian Sea

NARCIS (Netherlands)

Frieling, J.; Iakovleva, A.I.; Reichart, G.-J.; Aleksandrova, G.N.; Gnibidenko, Z.N.; Schouten, S.; Sluijs, A.

2014-01-01

We present a Paleocene–Eocene (ca. 60–52 Ma) sea-surface temperature record from sediments deposited in the epicontinental West Siberian Sea. TEX86 paleothermometry indicates long-term late Paleocene (~17 °C ca. 59 Ma) to early Eocene (26 °C at 52 Ma) sea-surface warming, consistent with trends

Coral transcriptome and bacterial community profiles reveal distinct Yellow Band Disease states in Orbicella faveolata

KAUST Repository

Closek, Collin J.

2014-06-20

Coral diseases impact reefs globally. Although we continue to describe diseases, little is known about the etiology or progression of even the most common cases. To examine a spectrum of coral health and determine factors of disease progression we examined Orbicella faveolata exhibiting signs of Yellow Band Disease (YBD), a widespread condition in the Caribbean. We used a novel combined approach to assess three members of the coral holobiont: the coral-host, associated Symbiodinium algae, and bacteria. We profiled three conditions: (1) healthy-appearing colonies (HH), (2) healthy-appearing tissue on diseased colonies (HD), and (3) diseased lesion (DD). Restriction fragment length polymorphism analysis revealed health state-specific diversity in Symbiodinium clade associations. 16S ribosomal RNA gene microarrays (PhyloChips) and O. faveolata complimentary DNA microarrays revealed the bacterial community structure and host transcriptional response, respectively. A distinct bacterial community structure marked each health state. Diseased samples were associated with two to three times more bacterial diversity. HD samples had the highest bacterial richness, which included components associated with HH and DD, as well as additional unique families. The host transcriptome under YBD revealed a reduced cellular expression of defense- and metabolism-related processes, while the neighboring HD condition exhibited an intermediate expression profile. Although HD tissue appeared visibly healthy, the microbial communities and gene expression profiles were distinct. HD should be regarded as an additional (intermediate) state of disease, which is important for understanding the progression of YBD. © 2014 International Society for Microbial Ecology. All rights reserved.

Serum and urine metabolomics study reveals a distinct diagnostic model for cancer cachexia

Science.gov (United States)

Yang, Quan‐Jun; Zhao, Jiang‐Rong; Hao, Juan; Li, Bin; Huo, Yan; Han, Yong‐Long; Wan, Li‐Li; Li, Jie; Huang, Jinlu; Lu, Jin

2017-01-01

Abstract Background Cachexia is a multifactorial metabolic syndrome with high morbidity and mortality in patients with advanced cancer. The diagnosis of cancer cachexia depends on objective measures of clinical symptoms and a history of weight loss, which lag behind disease progression and have limited utility for the early diagnosis of cancer cachexia. In this study, we performed a nuclear magnetic resonance‐based metabolomics analysis to reveal the metabolic profile of cancer cachexia and establish a diagnostic model. Methods Eighty‐four cancer cachexia patients, 33 pre‐cachectic patients, 105 weight‐stable cancer patients, and 74 healthy controls were included in the training and validation sets. Comparative analysis was used to elucidate the distinct metabolites of cancer cachexia, while metabolic pathway analysis was employed to elucidate reprogramming pathways. Random forest, logistic regression, and receiver operating characteristic analyses were used to select and validate the biomarker metabolites and establish a diagnostic model. Results Forty‐six cancer cachexia patients, 22 pre‐cachectic patients, 68 weight‐stable cancer patients, and 48 healthy controls were included in the training set, and 38 cancer cachexia patients, 11 pre‐cachectic patients, 37 weight‐stable cancer patients, and 26 healthy controls were included in the validation set. All four groups were age‐matched and sex‐matched in the training set. Metabolomics analysis showed a clear separation of the four groups. Overall, 45 metabolites and 18 metabolic pathways were associated with cancer cachexia. Using random forest analysis, 15 of these metabolites were identified as highly discriminating between disease states. Logistic regression and receiver operating characteristic analyses were used to create a distinct diagnostic model with an area under the curve of 0.991 based on three metabolites. The diagnostic equation was Logit(P) = −400.53 – 481.88�

Characterization of degenerative changes in the temporomandibular joint of the bengal tiger (Panthera tigris tigris) and siberian tiger (Panthera tigris altaica).

Science.gov (United States)

Murphy, M K; Arzi, B; Vapniarsky-Arzi, N; Athanasiou, K A

2013-11-01

The articulation of the temporomandibular joint (TMJ) is composed of the temporal bone dorsally, the mandibular condyle ventrally and a fibrous articular disc. The TMJ disc plays an essential role in distributing load between the two articular surfaces. Degeneration of the disc in the presence of joint pathology has been shown in man; however, TMJ pathology has not been documented previously in tigers (Panthera tigris). The mandibular condyle and TMJ disc of a Bengal tiger (P. tigris tigris) and a Siberian tiger (P. tigris altaica) were evaluated grossly and the TMJ disc was characterized biochemically and mechanically. Characterization of the TMJ disc verified region- and direction-dependent biochemical and mechanical properties, reflective of the functional demands on the joint. Degenerative joint disease was observed in both cases and this was more severe in the Siberian tiger. Simultaneous evaluation of joint pathology, biochemical composition and mechanical properties of the TMJ disc revealed a loss in functional properties (tensile anisotropy) of the disc as joint pathology advanced from moderate to severe. TMJ degeneration may compromise the ability of the animal to eat and thrive and may be a factor contributing to the endangered status of these species. Copyright © 2013 Elsevier Ltd. All rights reserved.

Statistical modeling of temperature, humidity and wind fields in the atmospheric boundary layer over the Siberian region

Science.gov (United States)

Lomakina, N. Ya.

2017-11-01

The work presents the results of the applied climatic division of the Siberian region into districts based on the methodology of objective classification of the atmospheric boundary layer climates by the "temperature-moisture-wind" complex realized with using the method of principal components and the special similarity criteria of average profiles and the eigen values of correlation matrices. On the territory of Siberia, it was identified 14 homogeneous regions for winter season and 10 regions were revealed for summer. The local statistical models were constructed for each region. These include vertical profiles of mean values, mean square deviations, and matrices of interlevel correlation of temperature, specific humidity, zonal and meridional wind velocity. The advantage of the obtained local statistical models over the regional models is shown.

Construction and Analysis of Siberian Tiger Bacterial Artificial Chromosome Library with Approximately 6.5-Fold Genome Equivalent Coverage

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Changqing Liu

2014-03-01

Full Text Available Bacterial artificial chromosome (BAC libraries are extremely valuable for the genome-wide genetic dissection of complex organisms. The Siberian tiger, one of the most well-known wild primitive carnivores in China, is an endangered animal. In order to promote research on its genome, a high-redundancy BAC library of the Siberian tiger was constructed and characterized. The library is divided into two sub-libraries prepared from blood cells and two sub-libraries prepared from fibroblasts. This BAC library contains 153,600 individually archived clones; for PCR-based screening of the library, BACs were placed into 40 superpools of 10 × 384-deep well microplates. The average insert size of BAC clones was estimated to be 116.5 kb, representing approximately 6.46 genome equivalents of the haploid genome and affording a 98.86% statistical probability of obtaining at least one clone containing a unique DNA sequence. Screening the library with 19 microsatellite markers and a SRY sequence revealed that each of these markers were present in the library; the average number of positive clones per marker was 6.74 (range 2 to 12, consistent with 6.46 coverage of the tiger genome. Additionally, we identified 72 microsatellite markers that could potentially be used as genetic markers. This BAC library will serve as a valuable resource for physical mapping, comparative genomic study and large-scale genome sequencing in the tiger.

NUMBER AND STRUCTURE OF MEDICAL STAFF IN THE SIBERIAN CITIES IN THE GREAT PATRIOTIC WAR OF 1941-1945

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Yuliya A. Davidova

2013-01-01

Full Text Available A dynamics of the number of medical personnel Siberian cities in the Great Patriotic war is analyzed in the article. The author studies quantity and structure of senior and low-grade medical personnel of healthcare institutions, shows its impact on medical and sanitarian anti-epidemic work, as well as considers methods of decision of personnel problem in the region. The study is based on analysis of documents of the State Archive of the Russian Federation, the Russian State Archive of Socio-Political History, the Russian State Archive of Economy and the Regional Archives of the Siberian cities.

The 40Ar-39Ar dating of the metasomatites in the deep-fault zones of margin suture system of Siberian platform

International Nuclear Information System (INIS)

Savel'eva, V.B.; Travin, A.V.; Zyryanov, A.S.

2003-01-01

For clarifying the time sequence of metasomatites formation of diverse geochemical types in deep-fault zones of margin suture system of Siberian platform the 40 Ar- 39 Ar-isotope dating of their rock-forming minerals was performed. It was ascertained that formation of major metasomatic formations in the Baikal and Sayan branches of the margin suture system of Siberian platform was asynchronous, the time lag being in excess of 100 bl. years [ru

Siberian snakes for the Fermilab Main Injector

International Nuclear Information System (INIS)

Anferov, V.A.; Baiod, R.; Courant, E.D.

1993-01-01

Appropriate Siberian snakes were designed to maintain the proton beam polarization during acceleration in the Fermilab Main Injector from 8 to 150 GeV. Various snake designs were investigated to find one fitting into the 14 m straight section spaces with the required spin rotation axis and the minimum orbit excursion. The authors studied both cold and warm discrete magnet snakes as well as warm snakes with helical magnets. For the warm discrete magnet snake, obtaining small orbit excursions required a nearly longitudinal snake axis, while axes near ±45 degrees are needed when using two snakes in a ring. The authors found acceptable snakes either by using superconducting magnets or by using warm magnets with a helical dipole field

Paleomagnetism of Early Paleozoic Rocks from the de Long Archipelago and Tectonics of the New Siberian Islands Terrane

Science.gov (United States)

Metelkin, D. V.; Chernova, A. I.; Matushkin, N. Y.; Vernikovskiy, V. A.

2017-12-01

The De Long archipelago is located to the north of the Anjou archipelago as a part of a large group between the Laptev Sea and the East Siberian Sea - the New Siberian Islands and consists of Jeannette Island, Bennett Island and Henrietta Island. These islands have been shown to be part of a single continental terrane, whose tectonic history was independent of other continental masses at least since the Ordovician. Paleomagnetic and precise geological data for the De Long archipelago were absent until recently. Only in 2013 special international field trips to the De Long Islands could be organized and geological, isotope-geochronological and paleomagnetic studies were carried out.On Jeannette Island a volcanic-sedimentary sequence intruded by mafic dikes was described. The age of these dikes is more likely Early Ordovician, close to 480 Ma, as evidenced by the results of our 40Ar/39Ar and paleomagnetic investigations of the dolerites as well as the result from detrital zircons in the host rocks published before. On Bennett Island, there are widespread Cambrian-Ordovician mainly terrigenous rocks. Paleomagnetic results from these rocks characterize the paleogeographic position of the De Long archipelago at 465 Ma and perhaps at 530 Ma, although there is no evidence for the primary origin of magnetization for the latter. On Henrietta Island the Early Cambrian volcanic-sedimentary section was investigated. A paleomagnetic pole for 520 Ma was obtained and confirmed by new 40Ar/39Ar results. Adding to our previous paleomagnetic data for the Anjou archipelago the extended variant of the apparent polar wander path for the New Siberian Island terrane was created. The established paleolatitudes define its location in the equatorial and subtropical zone no higher than 40 degrees during the Early Paleozoic. Because there are no good confirmations for true polarity and related geographic hemisphere we present two possibilities for tectonic reconstruction. But both these

Ovarian matrix metalloproteinases are differentially regulated during the estrous cycle but not during short photoperiod induced regression in Siberian hamsters (Phodopus sungorus

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Vrooman Lisa A

2010-06-01

Full Text Available Abstract Background Matrix metalloproteinases (MMPs are implicated as mediators for ovarian remodeling events, and are involved with ovarian recrudescence during seasonal breeding cycles in Siberian hamsters. However, involvement of these proteases as the photoinhibited ovary undergoes atrophy and regression had not been assessed. We hypothesized that 1 MMPs and their tissue inhibitors, the TIMPs would be present and differentially regulated during the normal estrous cycle in Siberian hamsters, and that 2 MMP/TIMP mRNA and protein levels would increase as inhibitory photoperiod induced ovarian degeneration. Methods MMP-2, -9, -14 and TIMP-1 and -2 mRNA and protein were examined in the stages of estrous (proestrus [P], estrus [E], diestrus I [DI], and diestrus II [DII] in Siberian hamsters, as well as after exposure to 3, 6, 9, and 12 weeks of inhibitory short photoperiod (SD. Results MMP-9 exhibited a 1.6-1.8 fold decrease in mRNA expression in DII (p Conclusions Although MMPs appear to be involved in the normal ovarian estrus cycle at the protein level in hamsters, those examined in the present study are unlikely to be key players in the slow atrophy of tissue as seen in Siberian hamster ovarian regression.

ETHNOCULTURAL CONTEXT IN “SIBERIAN TALES” OF V.G. KOROLENKO

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Oxana Ivanova

2012-05-01

Full Text Available The special features of ethnocultural context in the “Siberian Tales” of V.G. Korolenko based on the stories “Makar’s Dream”, “Sokolinets”,“Marusya’s wood house” are analyzed in this paper. The representatives of such nationalities as Yakuts, Russians and Tatars are regarded. The specific peculiarities of the representatives of these nationalities are pointed out. The dependence of the main national character features from the environment, severe climate and Yakut conditions is underlined.

Visual pigment coexpression in all cones of two rodents, the Siberian hamster, and the pouched mouse.

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Lukáts, Akos; Dkhissi-Benyahya, Ouria; Szepessy, Zsuzsanna; Röhlich, Pál; Vígh, Béla; Bennett, Nigel C; Cooper, Howard M; Szél, Agoston

2002-07-01

To decide whether the identical topography of short- and middle-wavelength cone photoreceptors in two species of rodents reflects the presence of both opsins in all cone cells. Double-label immunocytochemistry using antibodies directed against short-wavelength (S)-and middle- to long-wavelength (M/L)-sensitive opsin were used to determine the presence of visual pigments in cones of two species of rodents, the Siberian hamster (Phodopus sungorus) and the pouched mouse (Saccostomus campestris) from South Africa. Topographical distribution was determined from retinal whole-mounts, and the colocalization of visual pigments was examined using confocal laser scanning microscopy. Opsin colocalization was also confirmed in consecutive semithin tangential sections. The immunocytochemical results demonstrate that in both the Siberian hamster and the pouched mouse all retinal cones contain two visual pigments. No dorsoventral gradient in the differential expression of the two opsins is observed. The retina of the Siberian hamster and the pouched mouse is the first example to show a uniform coexpression of M and S cone opsins in all cones, without any topographical gradient in opsin expression. This finding makes these two species good models for the study of molecular control mechanisms in opsin coexpression in rodents, and renders them suitable as sources of dual cones for future investigations on the role and neural connections of this cone type.

The Socio-Political Crisis of the Siberian Region in the Post-February Period of the 1917 Revolution

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Mikhail I. Vtorushin

2017-12-01

Full Text Available The paper considers the problem of the Siberian region general crisis of the 1917 spring. The internal and external contradictions of the transformation process of socio-economic and political relations in Siberia are examined in terms of the post-February all- Russian revolutionary crisis development. The understanding of the socio-political Russian crisis in the spring of 1917, emerging after the February political coup, is essential in studying the revolutionary соnversion process of the early twentieth century Russian society, as this crisis has generally become the turning point in the country’s history and objectively led to the October political coup. The Russian revolutionary crisis constituents, its foreign and domestic manifestations require careful investigation in the issue formulation presented in the paper. The development specifics of the revolutionary crisis in the spring of 1917 in the trans-Uralian agricultural colony of the Russian Empire is of scientific interest, as well as the finding of its anti-crisis development scenarios in the paper presented period. The development of the nationwide crisis in Russia in the early twentieth century, due to the complex and contradictory processes of Russian society modernization in completing the industrial civilization and transition to the imperialist development stage, was complicated by the “Siberian historical issues” in the Siberian region. A set of these issues include the incompleteness of the regional peasantry land management, the contradictions between the old peasantry and Stolypin migrants, and also between the peasantry and the privileged regional Cossacks, the agricultural products export problems from Siberia to domestic and foreign markets, or marketing crisis, the contradictions between the regional and metropolis bourgeoisie, or the issue of the Siberians economic inequality, the local industry underdevelopment and the complete dependence of the local

Historical records of organic matter supply and degradation status in the East Siberian Sea

DEFF Research Database (Denmark)

Bröder, Lisa; Tesi, Tommaso; Andersson, August

2016-01-01

biomarkers were used to construct two centennial records in the East Siberian Sea. Differences in topsoil and Pleistocene Ice Complex Deposit permafrost concentrations, modeled using δ13C and δ14C, were larger between inner and outer shelf than the changes over time. Similarly, lignin-derived phenol...

Anthropogenic impacts on habitat structure and species richness in the west Siberian Arctic

Science.gov (United States)

Olga Khitun; Olga Rebristaya

2002-01-01

Intensive technogenous invasion in the West Siberian Arctic during the last two decades in connection with gas and oil exploration, along with the constant growth of domestic reindeer herds, has caused dramatic changes in arctic ecosystems. Loss of biodiversity on the species level has not yet been documented in the region on a whole, but changes in ecosystems in...

An odorant-binding protein as a new allergen from Siberian hamster (Phodopus sungorus).

Science.gov (United States)

Torres, J A; Pastor-Vargas, C; de las Heras, M; Vivanco, F; Cuesta, Javier; Sastre, J

2012-01-01

A case of anaphylaxis following a bite from a Siberian hamster (SH; Phodopus sungorus) is described. Skin prick tests with hair, urine and salivary gland extracts from SH were positive, while the tests were negative for hair extracts from other rodents. IgE immunoblotting with the patient serum revealed 3 IgE-binding bands of about 18, 21 and 23 kDa. When the patient's serum was preincubated with rabbit, mouse and gerbil hair extracts, no inhibition of the 3 SH IgE-binding bands was demonstrated. Proteins extracted from the 3 bands were analyzed by N-terminal sequencing and matrix-assisted laser desorption/ionization time-of-flight tandem mass spectrometry, and peptides were sequenced. IgE-binding bands were identified as being an odorant-binding protein belonging to the lipocalin family. Analysis of the 3 IgE-binding bands found in the hair, urine and salivary glands of SH showed a new allergenic protein lacking cross-reactivity with allergens from other rodents. The 3 bands likely correspond to isoforms of a single allergen. Copyright © 2011 S. Karger AG, Basel.

Intraspecific phylogenetic analysis of Siberian woolly mammoths using complete mitochondrial genomes

DEFF Research Database (Denmark)

Gilbert, M Thomas P; Drautz, Daniela I; Lesk, Arthur M

2008-01-01

We report five new complete mitochondrial DNA (mtDNA) genomes of Siberian woolly mammoth (Mammuthus primigenius), sequenced with up to 73-fold coverage from DNA extracted from hair shaft material. Three of the sequences present the first complete mtDNA genomes of mammoth clade II. Analysis...... to indicate any important functional difference between genomes belonging to the two clades, suggesting that the loss of clade II more likely is due to genetic drift than a selective sweep....

The contribution of the representatives of the Siberian (Tomsk mining and geological school to the developmet of mineral raw material base in Russia and Abroad

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П. С. Чубик

2017-12-01

Full Text Available This paper is devoted to the maturation and development of Siberian (Tomsk mining and geological school - one of the leading schools in Russia, which was created in the first third of the 20th century in Tomsk Technological Institute by V.A.Obruchev and M.A.Usov known to be outstanding Russian and Soviet geoscientists and members of the Russian Academy of Science. The article touches upon the participation of representatives of Siberian (Tomsk mining and geological school to the exploration and development of mineral and raw material base of Siberia, Russia’s Far East, Central Asia. The information about the most important geological discoveries made by nurslings of Siberian (Tomsk mining and geological school is provided.

Mapping Phylogenetic Trees to Reveal Distinct Patterns of Evolution.

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Kendall, Michelle; Colijn, Caroline

2016-10-01

Evolutionary relationships are frequently described by phylogenetic trees, but a central barrier in many fields is the difficulty of interpreting data containing conflicting phylogenetic signals. We present a metric-based method for comparing trees which extracts distinct alternative evolutionary relationships embedded in data. We demonstrate detection and resolution of phylogenetic uncertainty in a recent study of anole lizards, leading to alternate hypotheses about their evolutionary relationships. We use our approach to compare trees derived from different genes of Ebolavirus and find that the VP30 gene has a distinct phylogenetic signature composed of three alternatives that differ in the deep branching structure. phylogenetics, evolution, tree metrics, genetics, sequencing. © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Surface forcing of non-stand-replacing fires in Siberian larch forests

Science.gov (United States)

Chen, Dong; Loboda, Tatiana V.

2018-04-01

Wildfires are the dominant disturbance agent in the Siberian larch forests. Extensive low- to mediate-intensity non-stand-replacing fires are a notable property of fire regime in these forests. Recent large scale studies of these fires have focused mostly on their impacts on carbon budget; however, their potential impacts on energy budget through post-fire albedo changes have not been considered. This study quantifies the post-fire surface forcing for Siberian larch forests that experienced non-stand-replacing fires between 2001 and 2012 using the full record of MODIS MCD43A3 albedo product and a burned area product developed specifically for the Russian forests. Despite a large variability, the mean effect of non-stand-replacing fires imposed through albedo is a negative forcing which lasts for at least 14 years. However, the magnitude of the forcing is much smaller than that imposed by stand-replacing fires, highlighting the importance of differentiating between the two fire types in the studies involving the fire impacts in the region. The results of this study also show that MODIS-based summer differenced normalized burn ratio (dNBR) provides a reliable metric for differentiating non-stand-replacing from stand-replacing fires with an overall accuracy of 88%, which is of considerable importance for future work on modeling post-fire energy budget and carbon budget in the region.

Dynamic Changes in Amygdala Psychophysiological Connectivity Reveal Distinct Neural Networks for Facial Expressions of Basic Emotions.

Science.gov (United States)

Diano, Matteo; Tamietto, Marco; Celeghin, Alessia; Weiskrantz, Lawrence; Tatu, Mona-Karina; Bagnis, Arianna; Duca, Sergio; Geminiani, Giuliano; Cauda, Franco; Costa, Tommaso

2017-03-27

The quest to characterize the neural signature distinctive of different basic emotions has recently come under renewed scrutiny. Here we investigated whether facial expressions of different basic emotions modulate the functional connectivity of the amygdala with the rest of the brain. To this end, we presented seventeen healthy participants (8 females) with facial expressions of anger, disgust, fear, happiness, sadness and emotional neutrality and analyzed amygdala's psychophysiological interaction (PPI). In fact, PPI can reveal how inter-regional amygdala communications change dynamically depending on perception of various emotional expressions to recruit different brain networks, compared to the functional interactions it entertains during perception of neutral expressions. We found that for each emotion the amygdala recruited a distinctive and spatially distributed set of structures to interact with. These changes in amygdala connectional patters characterize the dynamic signature prototypical of individual emotion processing, and seemingly represent a neural mechanism that serves to implement the distinctive influence that each emotion exerts on perceptual, cognitive, and motor responses. Besides these differences, all emotions enhanced amygdala functional integration with premotor cortices compared to neutral faces. The present findings thus concur to reconceptualise the structure-function relation between brain-emotion from the traditional one-to-one mapping toward a network-based and dynamic perspective.

Paleozoic–Mesozoic Porphyry Cu(Mo and Mo(Cu Deposits within the Southern Margin of the Siberian Craton: Geochemistry, Geochronology, and Petrogenesis (a Review

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Anita N. Berzina

2016-11-01

Full Text Available The southern margin of the Siberian craton hosts numerous Cu(Mo and Mo(Cu porphyry deposits. This review provides the first comprehensive set of geological characteristics, geochronological data, petrochemistry, and Sr–Nd isotopic data of representative porphyry Cu(Mo and Mo(Cu deposits within the southern margin of the Siberian craton and discusses the igneous processes that controlled the evolution of these magmatic systems related to mineralization. Geochronological data show that these porphyry deposits have an eastward-younging trend evolving from the Early Paleozoic to Middle Mesozoic. The western part of the area (Altay-Sayan segment hosts porphyry Cu and Mo–Cu deposits that generally formed in the Early Paleozoic time, whereas porphyry Cu–Mo deposits in the central part (Northern Mongolia formed in the Late Paleozoic–Early Mesozoic. The geodynamic setting of the region during these mineralizing events is consistent with Early Paleozoic subduction of Paleo-Asian Ocean plate with the continuous accretion of oceanic components to the Siberian continent and Late Paleozoic–Early Mesozoic subduction of the west gulf of the Mongol–Okhotsk Ocean under the Siberian continent. The eastern part of the study area (Eastern Transbaikalia hosts molybdenum-dominated Mo and Mo–Cu porphyry deposits that formed in the Jurassic. The regional geodynamic setting during this mineralizing process is related to the collision of the Siberian and North China–Mongolia continents during the closure of the central part of the Mongol–Okhotsk Ocean in the Jurassic. Available isotopic data show that the magmas related to porphyritic Cu–Mo and Mo–Cu mineralization during the Early Paleozoic and Late Paleozoic–Early Mesozoic were mainly derived from mantle materials. The generation of fertile melts, related to porphyritic Mo and Mo–Cu mineralization during the Jurassic involved variable amounts of metasomatized mantle source component, the

Black-footed ferrets and Siberian polecats as ecological surrogates and ecological equivalents

Science.gov (United States)

Biggins, D.E.; Hanebury, L.R.; Miller, B.J.; Powell, R.A.

2011-01-01

Ecologically equivalent species serve similar functions in different communities, and an ecological surrogate species can be used as a substitute for an equivalent species in a community. Siberian polecats (Mustela eversmanii) and black-footed ferrets (M. nigripes) have long been considered ecological equivalents. Polecats also have been used as investigational surrogates for black-footed ferrets, yet the similarities and differences between the 2 species are poorly understood. We contrasted activity patterns of radiotagged polecats and ferrets released onto ferret habitat. Ferrets tended to be nocturnal and most active after midnight. Polecats were not highly selective for any period of the day or night. Ferrets and polecats moved most during brightly moonlit nights. The diel activity pattern of ferrets was consistent with avoidance of coyotes (Canis latrans) and diurnal birds of prey. Similarly, polecat activity was consistent with avoidance of red foxes (Vulpes vulpes) in their natural range. Intraguild predation (including interference competition) is inferred as a selective force influencing behaviors of these mustelines. Examination of our data suggests that black-footed ferrets and Siberian polecats might be ecological equivalents but are not perfect surrogates. Nonetheless, polecats as surrogates for black-footed ferrets have provided critical insight needed, especially related to predation, to improve the success of ferret reintroductions. ?? 2011 American Society of Mammalogists.

Confocal Raman microspectroscopy reveals a convergence of the chemical composition in methanogenic archaea from a Siberian permafrost-affected soil.

Science.gov (United States)

Serrano, Paloma; Hermelink, Antje; Lasch, Peter; de Vera, Jean-Pierre; König, Nicole; Burckhardt, Oliver; Wagner, Dirk

2015-12-01

Methanogenic archaea are widespread anaerobic microorganisms responsible for the production of biogenic methane. Several new species of psychrotolerant methanogenic archaea were recently isolated from a permafrost-affected soil in the Lena Delta (Siberia, Russia), showing an exceptional resistance against desiccation, osmotic stress, low temperatures, starvation, UV and ionizing radiation when compared to methanogens from non-permafrost environments. To gain a deeper insight into the differences observed in their resistance, we described the chemical composition of methanogenic strains from permafrost and non-permafrost environments using confocal Raman microspectroscopy (CRM). CRM is a powerful tool for microbial identification and provides fingerprint-like information about the chemical composition of the cells. Our results show that the chemical composition of methanogens from permafrost-affected soils presents a high homology and is remarkably different from strains inhabiting non-permafrost environments. In addition, we performed a phylogenetic reconstruction of the studied strains based on the functional gene mcrA to prove the different evolutionary relationship of the permafrost strains. We conclude that the permafrost methanogenic strains show a convergent chemical composition regardless of their genotype. This fact is likely to be the consequence of a complex adaptive process to the Siberian permafrost environment and might be the reason underlying their resistant nature. © FEMS 2015. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

The joint Russia-US-Sweden studies in the near-shore zone of the East-Siberian Arctic seas: (1999-2008)

Science.gov (United States)

Sergienko, V. I.; Shakhova, N.; Dudarev, O.; Gustafsson, O.; Anderson, L.; Semiletov, I.

2009-04-01

The Arctic Ocean is surrounded by permafrost, which is being degraded at an increasing rate under conditions of warming which are most pronounced in Siberia and Alaska . A major constraint on our ability to understand linkages between the Arctic Ocean and the global climate system is the scarcity of observational data in the Siberian Arctic marginal seas where major fresh water input and terrestrial CNP fluxes exist. The East-Siberian Sea has never been investigated by modern techniques despite the progress that has been made in new technologies useful for measuring ocean characteristics of interest. In this multi-year international project which joins scientists from 3 nations (Russia-USA-Sweden), and in cooperation with scientists from other countries (UK, Netherlands) we focus on poorly explored areas located west from the U.S.-Russia boundary, Warming causes thawing of the permafrost underlying a substantial fraction of the Arctic; this process could accelerate coastal erosion, river discharge and carbon losses from soils. Siberian freshwater discharge to the Arctic Ocean is expected to increase with increasing temperatures, potentially resulting in greater river export of old terrigenous organic carbon to the ocean. Rivers integrate variability in the components of the hydrometeorological regime, including soil condition, permafrost seasonal thaw, and thermokarst development, all the variables that determine atmospheric and ground water supply for the rivers and chemical weathering in their watershed. Thus studying carbon cycling in the East Siberian Arctic marginal seas has a high scientific priority in order to establish the carbon budget and evaluate the role of the Arctic region in global carbon cycling, especially in the coastal zone where the redistribution of carbon between terrestrial and marine environments occurs and the characteristics of carbon exchange with atmosphere are unknown. In this report we overview the main field activities and present

Comparison of physiological load tolerances between the Siberian husky and the Czechoslovakian wolfdog, during sport training

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Dominika Gulda

2018-03-01

Full Text Available The purpose of the study was to determine the physiological load tolerances of two breeds of dogs used for sports, namely the Siberian husky and the Czechoslovakian wolfdog, on the basis of measurements of surface temperature and blood lactic acid levels.Two breeds - Czechoslovakian wolfdog (10 individuals and Siberian husky (10 individuals, 20 dogs - male, 4-6 years old, were selected for the study. All the qualified animals were previously examined by a veterinarian and considered to be healthy. The dogs tested were used in dogtrekking sport competitions. For both breeds, an attempt was made to test the dogtrekking harness for 5 km of non-stop track running. The animals trotted while being led by a guide. Three attempts were made for each dog at 48 hour intervals. All dogs were tested for two parameters, first before and then after the exercise – measuring surface temperature at selected points of the body as well as lactic acid concentration. A higher and statistically significant level of lactic acid was recorded in the case of Siberian husky. Before the run, the level of lactic acid was comparable in both breeds. The second parameter was the surface temperature measured at the selected measuring points. Significant statistical differences were noted for the wolfdog breed at P≤0.05 before the exercise and 10 minutes after resting, at the neck, rump and abdominal points. In addition, the same level of statistical significance was measured by surface thermography at the abdominal point, both before and immediately after the run. The high statistically significant increase (P≤0.01 in surface temperature was noted for muscles of the so-called rump, both before and after the exertion. There was no statistically significant difference in the back thermography in the wolfdog breed. In the Siberian husky breed, statistically significant differences (P≤0.05 were observed at the neck, rump and chest points, in confrontation with the

The Central European, Tarim and Siberian Large Igneous Provinces, Late Palaeozoic orogeny and coeval metallogeny

NARCIS (Netherlands)

de Boorder, H.|info:eu-repo/dai/nl/098199056

2014-01-01

The formation of the Central European and Tarim Large Igneous Provinces (LIPs) in the Early Permian coincided with the demise of the Variscan and the Southern Tianshan orogens, respectively. The Early Triassic Siberian LIP was formed in the wake of the Western Altaid orogeny in the Late Permian.

Distinct Biological Potential of Streptococcus gordonii and Streptococcus sanguinis Revealed by Comparative Genome Analysis.

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Zheng, Wenning; Tan, Mui Fern; Old, Lesley A; Paterson, Ian C; Jakubovics, Nicholas S; Choo, Siew Woh

2017-06-07

Streptococcus gordonii and Streptococcus sanguinis are pioneer colonizers of dental plaque and important agents of bacterial infective endocarditis (IE). To gain a greater understanding of these two closely related species, we performed comparative analyses on 14 new S. gordonii and 5 S. sanguinis strains using various bioinformatics approaches. We revealed S. gordonii and S. sanguinis harbor open pan-genomes and share generally high sequence homology and number of core genes including virulence genes. However, we observed subtle differences in genomic islands and prophages between the species. Comparative pathogenomics analysis identified S. sanguinis strains have genes encoding IgA proteases, mitogenic factor deoxyribonucleases, nickel/cobalt uptake and cobalamin biosynthesis. On the contrary, genomic islands of S. gordonii strains contain additional copies of comCDE quorum-sensing system components involved in genetic competence. Two distinct polysaccharide locus architectures were identified, one of which was exclusively present in S. gordonii strains. The first evidence of genes encoding the CylA and CylB system by the α-haemolytic S. gordonii is presented. This study provides new insights into the genetic distinctions between S. gordonii and S. sanguinis, which yields understanding of tooth surfaces colonization and contributions to dental plaque formation, as well as their potential roles in the pathogenesis of IE.

Mitochondrial genome diversity in the Tubalar, Even, and Ulchi: contribution to prehistory of native Siberians and their affinities to Native Americans.

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Sukernik, Rem I; Volodko, Natalia V; Mazunin, Ilya O; Eltsov, Nikolai P; Dryomov, Stanislav V; Starikovskaya, Elena B

2012-05-01

To fill remaining gaps in mitochondrial DNA diversity in the least surveyed eastern and western flanks of Siberia, 391 mtDNA samples (144 Tubalar from Altai, 87 Even from northeastern Siberia, and 160 Ulchi from the Russian Far East) were characterized via high-resolution restriction fragment length polymorphism/single nucleotide polymorphisms analysis. The subhaplogroup structure was extended through complete sequencing of 67 mtDNA samples selected from these and other related native Siberians. Specifically, we have focused on the evolutionary histories of the derivatives of M and N haplogroups, putatively reflecting different phases of settling Siberia by early modern humans. Population history and phylogeography of the resulting mtDNA genomes, combined with those from previously published data sets, revealed a wide range of tribal- and region-specific mtDNA haplotypes that emerged or diversified in Siberia before or after the last glacial maximum, ∼18 kya. Spatial distribution and ages of the "east" and "west" Eurasian mtDNA haploclusters suggest that anatomically modern humans that originally colonized Altai derived from macrohaplogroup N and came from Southwest Asia around 38,000 years ago. The derivatives of macrohaplogroup M, which largely emerged or diversified within the Russian Far East, came along with subsequent migrations to West Siberia millennia later. The last glacial maximum played a critical role in the timing and character of the settlement of the Siberian subcontinent. Copyright © 2012 Wiley Periodicals, Inc.

Tracing river runoff and DOC over the East Siberian Shelf using in situ CDOM measurements

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Pugach, Svetlana; Semiletov, Igor; Pipko, Irina

2010-05-01

The Great Siberian Rivers integrate meteorological and hydrological changes in their watersheds and play a significant role in the physical and biogeochemical regime of the Arctic Ocean through transport of fresh water (FW) and carbon into the sea. Since 1994, the Laboratory of Arctic Research POI in cooperation with the IARC UAF investigate the fresh water and carbon fluxes in the Siberian Arctic land-shelf system with the special emphasize in the East Siberian Arctic shelf (ESAS) which represents the widest and shallowest continental shelf in the World Ocean, yet it is still poorly explored. The East Siberian Sea is influenced by water exchange from the eastern Laptev Sea (where local shelf waters are diluted mostly by Lena River discharge) and by inflow of Pacific waters from the Chukchi Sea. This region is characterized by the highest rate of coastal erosion and significant volume of the riverine discharge and exhibits the largest gradients in all oceanographic parameters observed for the entire Arctic Ocean. Here we demonstrate a connection among Chromophoric (or Colored) Dissolved Organic Matter (CDOM) which represents the colored fraction of Dissolved Organic Carbon (DOC), salinity, and pCO2. Our data have documented strong linear correlations between salinity and CDOM in the near shore zone strongly influenced by riverine runoff. Correlation coefficient between CDOM and salinity in surface waters was equal to -0.94, -0.94 and -0.95 for surface water stations in September of 2003, 2004, and 2005, respectively. Combined analysis of CDOM and DOC data demonstrated a high degree of correlation between these parameters (r=0.96). Such close connection between these characteristics of waters in this region makes it possible to restore the distribution of DOC according to our original CDOM data of the profiling systems, such as CTD-Seabird equipped by WETStar CDOM fluorimeter. It is shown that the CDOM can be used as a conservative tracer to follow the transport and

The Chara-Sina dyke swarm in the structure of the Middle Paleozoic Vilyui rift system (Siberian Craton)

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Kiselev, A. I.; Konstantinov, K. M.; Yarmolyuk, V. V.; Ivanov, A. V.

2016-11-01

The formation of the Vilyui rift system in the eastern Siberian Craton was finished with breakdown of the continent and formation of its eastern margin. A characteristic feature of this rift system is the radial distribution of dyke swarms of basic rocks. This peculiarity allows us to relate it to the breaking processes above the mantle plume, the center of which was located in the region overlain in the modern structure by the foreland of the Verkhoyan folded-thrust belt. The Chara-Sina dyke swarm is the southern part of a large area of Middle Paleozoic basaltic magmatism in the eastern Siberian Craton. The OIB-like geochemical characteristics of dolerite allow us to suggest that the melting substrate for Middle Paleozoic basaltic magmatism was represented by a relatively homogeneous, mid-depleted mantle of the plume with geochemical parameters similar to those of OIB.

Opposing effects of fire severity on climate feedbacks in Siberian larch forests

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Loranty, M. M.; Alexander, H. D.; Natali, S.; Kropp, H.; Mack, M. C.; Bunn, A. G.; Davydov, S. P.; Erb, A.; Kholodov, A. L.; Schaaf, C.; Wang, Z.; Zimov, N.; Zimov, S. A.

2017-12-01

Boreal larch forests in northeastern Siberia comprise nearly 25% of the continuous permafrost zone. Structural and functional changes in these ecosystems will have important climate feedbacks at regional and global scales. Like boreal ecosystems in North America, fire is an important determinant of landscape scale forest distribution, and fire regimes are intensifying as climate warms. In Siberian larch forests are dominated by a single tree species, and there is evidence that fire severity influences post-fire forest density via impacts on seedling establishment. The extent to which these effects occur, or persist, and the associated climate feedbacks are not well quantified. In this study we use forest stand inventories, in situ observations, and satellite remote sensing to examine: 1) variation in forest density within and between fire scars, and 2) changes in land surface albedo and active layer dynamics associated with forest density variation. At the landscape scale we observed declines in Landsat derived albedo as forests recovered in the first several decades after fire, though canopy cover varied widely within and between individual fire scars. Within an individual mid-successional fire scar ( 75 years) we observed canopy cover ranging from 15-90% with correspondingly large ranges of albedo during periods of snow cover, and relatively small differences in albedo during the growing season. We found an inverse relationship between canopy density and soil temperature within this fire scar; high-density low-albedo stands had cooler soils and shallower active layers, while low-density stands had warmer soils and deeper active layers. Intensive energy balance measurements at a high- and low- density site show that canopy cover alters the magnitude and timing of ground heat fluxes that affect active layer properties. Our results show that fire impacts on stand structure in Siberian larch forests affect land surface albedo and active layer dynamics in ways that

Refined permo-triassic paleomagnetic pole for the Siberian platform and geomagnetic secular variations at the Paleozoic-Mesozoic boundary as recorded in volcanic traps key sections of northern Siberia

Science.gov (United States)

Pavlov, V. E.; Veselovskiy, R. V.; Khokhlov, A.; Latyshev, A. V.; fluteau, F.

2011-12-01

Two new volcanic key sections of the Siberian traps erupted ~ 250 million years ago have been studied in the Norilsk region (NW of the Siberian platform). Along with results obtained earlier from both this area (Heunemann et al., 2004) and Maymecha-Kotuy region (northern Siberian platform, Pavlov et al., 2011) these data constitute rather extensive database, including paleomagnetic information on about 200 volcanic flows. Using this information we can not only get refined permo-triassic paleomagnetic pole for the Siberian platform, based exceptionally on lava flows data, but also estimate amplitude of geomagnetic secular variation at the Paleozoic-Mesozoic boundary and check their compatibility with statistic models, suggested for description of recent (Late Cenozoic) Earth's magnetic field. Moreover, our results can be also used to obtain additional time constraints on duration of the trap emplacement and to isolate volcanic pulses within the traps sections. We present a report where we discuss all these topics. This work was supported by grants NSF # EAR 0807585 and RBRF #09-05-01180, 11-05-00601,10-05- 00557.

Weak population structure in European roe deer (Capreolus capreolus and evidence of introgressive hybridization with Siberian roe deer (C. pygargus in northeastern Poland.

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Juanita Olano-Marin

Full Text Available We investigated contemporary and historical influences on the pattern of genetic diversity of European roe deer (Capreolus capreolus. The study was conducted in northeastern Poland, a zone where vast areas of primeval forests are conserved and where the European roe deer was never driven to extinction. A total of 319 unique samples collected in three sampling areas were genotyped at 16 microsatellites and one fragment (610 bp of mitochondrial DNA (mtDNA control region. Genetic diversity was high, and a low degree of genetic differentiation among sampling areas was observed with both microsatellites and mtDNA. No evidence of genetic differentiation between roe deer inhabiting open fields and forested areas was found, indicating that the ability of the species to exploit these contrasting environments might be the result of its phenotypic plasticity. Half of the studied individuals carried an mtDNA haplotype that did not belong to C. capreolus, but to a related species that does not occur naturally in the area, the Siberian roe deer (C. pygargus. No differentiation between individuals with Siberian and European mtDNA haplotypes was detected at microsatellite loci. Introgression of mtDNA of Siberian roe deer into the genome of European roe deer has recently been detected in eastern Europe. Such introgression might be caused by human-mediated translocations of Siberian roe deer within the range of European roe deer or by natural hybridization between these species in the past.

Exploration of horizontal intrinsic spin resonances with two partial Siberian snakes

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F. Lin

2007-04-01

Full Text Available Two partial Siberian snakes were used to avoid all the spin imperfection and vertical intrinsic resonances in the alternating gradient synchrotron (AGS at Brookhaven National Laboratory. However, the horizontal betatron motion can cause polarization loss resulting from the nonvertical stable spin direction in the presence of two partial snakes. This type of resonance, called a horizontal intrinsic spin resonance, was observed and systematically studied in the AGS. A simplified analytic model and numerical simulation have been developed to compare with experimental data. Properties of the horizontal intrinsic resonance are discussed.

MODEL RECONSTRUCTION OF THE VEGETATION COVER OF THE SOUTH OF THE WEST SIBERIAN PLAIN FROM THE LATE PALEOLITHIC PERIOD UNTIL THE LATE XIX CENTURY

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М. А. Kharitonenkov

2016-06-01

Full Text Available Model reconstruction of vegetation cover of the south of the West Siberian Plain from the late Pleistocene to the modern era has been carried out on the basis of the associated chronological analysis of paleontological, archaeological and paleoclimate data. We have determined the starting point of active vegetation transformation in the south of the West Siberian Plain as a result of tradition-bound exploitation of natural resources. Periods of maximum anthropogenic load – peak and relative recession – on vegetation cover, acting as a further determinant factor, have been determined in this study for the first time. Comprehensive analysis and new understanding of palynological, paleozoological, archaeological and paleoclimate data in terms of theoretical synecology confirmed the notions on the determinant role of the anthropogenic factor in the transformation of the Pleistocene forest-meadow-steppe vegetation into contemporary communities of the southern taiga, the subtaiga and the forest-steppe of the West Siberian Plain.

Expression of cytokeratins in odontogenic jaw cysts: monoclonal antibodies reveal distinct variation between different cyst types.

Science.gov (United States)

Hormia, M; Ylipaavalniemi, P; Nagle, R B; Virtanen, I

1987-08-01

Immunostaining with monoclonal antibodies was used to study and compare the cytokeratin content of odontogenic cysts and normal gingival epithelium. Two monoclonal antibodies, PKK2 and KA1, stained the whole epithelium in all cyst samples. In gingiva, PKK2 gave a suprabasal staining and KA1 reacted with all epithelial cell layers. Antibodies PKK1, KM 4.62 and KS 8.12 gave a heterogeneous staining in follicular and radicular cysts. In keratocysts and in gingiva PKK1 and KM 4.62 reacted mainly with basal cells and KS 8.12 gave a suprabasal staining. Antibodies reacting with the simple epithelial cytokeratin polypeptide No. 18 (PKK3, KS 18.18) recognized in gingiva only solitary cells compatible with Merkel cells. In a case of follicular ameloblastoma a distinct staining of tumor epithelium was revealed with these antibodies. In 2 follicular cysts, but not in other cyst types, a layer of cytokeratin 18-positive cells was revealed. KA5 and KK 8.60 antibodies, reacting exclusively with keratinizing epithelia, including normal gingiva, gave no reaction in radicular cysts, keratocysts and ameloblastoma. Two of the follicular cysts, were negative for PKK3 and KS 18.18, but reacted strongly with KA5 and KK 8.60. The present results show that odontogenic jaw cysts have distinct differences in their cytokeratin content. With the exception of some follicular cysts, they lack signs of keratinizing epithelial differentiation. Only follicular cysts appear to share with some types of ameloblastoma the expression of cytokeratin polypeptide No. 18.

The crust and mantle beneath the Siberian provinces: a preliminary model based on new receiver function analysis

DEFF Research Database (Denmark)

Soliman, Mohammad Youssof Ahmad; Artemieva, Irina; Thybo, Hans

2012-01-01

The new receiver function (RF) study complements the existing seismic data on the crustal and upper mantle structure at the margins of the Siberian craton and the West Siberian Basin. So far, RF studies of Siberia have been largely restricted to the Baikal rift zone (Gao et al., 2004; Liu and Gao......, 2006; Anan'in et al., 2009). However, available seismic data allow to apply the RF approach to other tectonic structures of the region. We calculate the RF using the LQT method (Vinnik, 1977; Kind et al. 1995) in the version by Yuan et al. (1997). This method involves rotating the earth...... the deconvolved signals using the appropriate moveout corrections which account for the dependence of Ps arrivals on P wave slowness. The results of RF analysis of the crustal and mantle structure are interpreted in terms of tectonic and geodynamic evolution of different provinces of Siberia that range from...

Large scale aggregate microarray analysis reveals three distinct molecular subclasses of human preeclampsia.

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Leavey, Katherine; Bainbridge, Shannon A; Cox, Brian J

2015-01-01

Preeclampsia (PE) is a life-threatening hypertensive pathology of pregnancy affecting 3-5% of all pregnancies. To date, PE has no cure, early detection markers, or effective treatments short of the removal of what is thought to be the causative organ, the placenta, which may necessitate a preterm delivery. Additionally, numerous small placental microarray studies attempting to identify "PE-specific" genes have yielded inconsistent results. We therefore hypothesize that preeclampsia is a multifactorial disease encompassing several pathology subclasses, and that large cohort placental gene expression analysis will reveal these groups. To address our hypothesis, we utilized known bioinformatic methods to aggregate 7 microarray data sets across multiple platforms in order to generate a large data set of 173 patient samples, including 77 with preeclampsia. Unsupervised clustering of these patient samples revealed three distinct molecular subclasses of PE. This included a "canonical" PE subclass demonstrating elevated expression of known PE markers and genes associated with poor oxygenation and increased secretion, as well as two other subclasses potentially representing a poor maternal response to pregnancy and an immunological presentation of preeclampsia. Our analysis sheds new light on the heterogeneity of PE patients, and offers up additional avenues for future investigation. Hopefully, our subclassification of preeclampsia based on molecular diversity will finally lead to the development of robust diagnostics and patient-based treatments for this disorder.

Widespread Expansion of Boreal Shrublands in the Siberian Low Arctic Is Linked to Cryogenic Disturbance and Geomorphology

Science.gov (United States)

Frost, G. V.; Epstein, H. E.; Walker, D. A.

2012-12-01

Declassified imagery from the KH-4B "Corona" and KH-7 "Gambit" Cold War satellite surveillance systems (1963-1972) are a unique, high-resolution dataset that establishes a baseline for landcover-change studies in the Russian Arctic spanning 6 decades. We co-registered Corona/Gambit and modern high-resolution imagery for seven ~65 km2 Low Arctic sites in northwest Siberia and Chukotka and quantified changes in the extent of tall shrublands dominated by Siberian alder (Alnus fruticosa) using a point-intercept sampling approach. We made ground observations at two sites to identify important geomorphic processes and physiographic units associated with shrub expansion. Alder shrubland cover increased at all sites; relative to the 1960s extent, shrubland extent increased by 5-31% at the northwest Siberian sites and by 9% at both Chukotkan sites,. In northwest Siberia, alder expansion was closely linked to cryogenic disturbances related to patterned-ground and active-layer detachments. At the Chukotkan sites, most alder expansion occurred on hillslope colluvium and floodplains; we also observed modest increases in Siberian dwarf pine (Pinus pumila). The close correspondence between expanding shrub patches and disturbance processes indicates that sparsely-vegetated, mineral-rich seedbeds strongly facilitate alder recruitment, and that the spatio-temporal attributes of disturbance mechanisms are a key determinant of landscape susceptibility to shrub expansion. Shrub expansion, in turn, initiates a cascade of effects on permafrost thermal regime and disturbance, promoting the accumulation of biomass and potentially buffering permafrost from climate warming.; Recently-established alder shrubs growing on non-sorted circles in patterned ground near Obskaya, northwest Siberia.

SIBERIAN POLICE BUREAUCRACY IN THE STATE APPARATUS OF ABSOLUTISM IN THE FIRST HALF OF THE 19TH CENTURY

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И А Коновалов

2017-12-01

Full Text Available Based on the pre-revolutionary legislation and archive materials, the article comprehen-sively considers the process of the formation of the Siberian police bureaucracy in the early 19thcentury. The objectives of the article are as follows: the reconstruction and comprehension of both positive and negative experienceaccumulated by the prerevolutionary regional govern-ment bodies, as well as of the peculiarities of the Siberian police bureaucracy; the explanation of the nature of the interrelations between the government and the population of the outskirts of the Russian Empire; the identifi cation of those aspects in the activities of local authorities, which for various reasons rarely come into the view of researchers. The author concludes that in the fi rst half of the 19thcenturythe State administration was not separated from police activi-ties, the administrative and police authorities in the region were de facto merged. A specifi c feature of the Siberian administration was the greater autonomy of the political machinery rather than in the country’s centre. It was conditioned by the remoteness from the centre and by the absence of nobilityassociations in the region.Due to this, the controlling,judicial and trustee functions,exercised by the nobilityin the centre,in Siberia were assigned to civil ser-vants. The mainconclusion is that the powers of the administrative and police authorities in the region had their own features and were much wider than in the central provinces of the Russian Empire.

Southern montane populations did not contribute to the recolonization of West Siberian Plain by Siberian larch (Larix sibirica): a range-wide analysis of cytoplasmic markers.

Science.gov (United States)

Semerikov, Vladimir L; Semerikova, Svetlana A; Polezhaeva, Maria A; Kosintsev, Pavel A; Lascoux, Martin

2013-10-01

While many species were confined to southern latitudes during the last glaciations, there has lately been mounting evidence that some of the most cold-tolerant species were actually able to survive close to the ice sheets. The contribution of these higher latitude outposts to the main recolonization thrust remains, however, untested. In the present study, we use the first range-wide survey of genetic diversity at cytoplasmic markers in Siberian larch (Larix sibirica; four mitochondrial (mt) DNA loci and five chloroplast (cp) DNA SSR loci) to (i) assess the relative contributions of southern and central areas to the current L. sibirica distribution range; and (ii) date the last major population expansion in both L. sibirica and adjacent Larix species. The geographic distribution of cpDNA variation was uninformative, but that of mitotypes clearly indicates that the southernmost populations, located in Mongolia and the Tien-Shan and Sayan Mountain ranges, had a very limited contribution to the current populations of the central and northern parts of the range. It also suggests that the contribution of the high latitude cryptic refugia was geographically limited and that most of the current West Siberian Plain larch populations likely originated in the foothills of the Sayan Mountains. Interestingly, the main population expansion detected through Approximate Bayesian Computation (ABC) in all four larch species investigated here pre-dates the LGM, with a mode in a range of 220,000-1,340,000 years BP. Hence, L. sibirica, like other major conifer species of the boreal forest, was strongly affected by climatic events pre-dating the Last Glacial Maximum. © 2013 John Wiley & Sons Ltd.

Canine distemper in Siberian tiger cubs from Zagreb ZOO: case report

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Dean Konjević

2011-01-01

Full Text Available Canine distemper is a contagious, potentially lethal disease of mainly domestic and wild canids, but also of many other mammalian species including large felids. In February 2004, two Siberian tiger (Panthera tigris altaica cubs at the age of six months died at the Zagreb ZOO. The animals were presented for necropsy with two days history of severe digestive disorders, characterized mainly by haemathemesis. Dissections revealed catarrhal to pseudomembranous gastroenteritis (depending on the animal accompanied with haemorrhagic oedema of the lungs. Necrotic tonsillitis and disseminated depletion of the lymphocytes were the most prominent histological findings in both examined animals, while intranuclear and intracytoplasmatic inclusion bodies were found in the samples of the tongues and intestines. Representative portions of the livers, intestines, tonsils and lymph nodes were submitted for bacteriological and mycological analysis. The presence of Clostridium spp., Campylobacter coli and Escherichia coli was detected in gut samples, coli-like bacteria were found in samples of liver, tonsils and lymph nodes, while Candida sp. was found in the gut and pharynx samples. Toxicological analysis excluded anticoagulant and organophosphorous intoxication as the cause of death. Immunohistochemical analysis was positive for canine distemper virus. Based on all this, epizootiological, clinical and additional findings, canine distemper was recognized as the cause of the observed condition in these animals.

Stratigraphic, regional unconformity analysis and potential petroleum plays of East Siberian Sea Basin

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Karpov, Yury; Stoupakova, Antonina; Suslova, Anna; Agasheva, Mariia

2017-04-01

The East Siberian Sea basin (ESSB) one of the most unexplored part of the Russian Arctic shelf, extending for over 1000 km from New Siberian Islands archipelago to Wrangel Island. This region is considered as a region with probable high petroleum potential. Within the ESSB several phases of orogeny are recognized [1]: Elsmerian orogeny in Early Devonian, Early Brooks orogeny in Early Cretaceous, Late Brooks orogeny in Late Cretaceous. Two generations of the basins could be outlined. Both of these generations are controlled by the basement domains [1]: Paleozoic (post-Devonian) to Mesozoic basins preserved north of the Late Mesozoic frontal thrusts; Aptian-Albian to Quaternary basins, postdating the Verkhoyansk-Brookian orogeny, and evolving mainly over the New-Siberian-Chukchi Fold Belt. Basin is filled with siliclastic sediments and in the deepest depocentres sediments thickness exceeds 8-10 km in average. Seismic data was interpreted using methods of seismic stratigraphy. Finally, main seismic horizons were indicated and each horizon follows regional stratigraphic unconformities: mBU - in base of Cenozoic, BU - in base of Upper Cretaceous, LCU - in base of Cretaceous, JU - in middle of Jurassic, F - in top of Basement. In ESSB, we can identify Permian, Triassic, Jurassic, Cretaceous, Paleogene and Neogene seismic stratigraphy complexes. Perspective structures, investigated in ESSB were founded out by comparing seismogeological cross-sections with explored analogs in other onshore and offshore basins [2, 3, 4]. The majority of structures could be connected with stratigraphic and fault traps. The most perspective prospects are probably connected with grabens and depressions, where thickness of sediments exceed 10 km. Reservoirs in ESSB are proposed by regional geological explorations on New Siberian Islands Archipelago and Wrangel Island. Potential seals are predominantly assigned to Jurassic and Cretaceous periods. Thick clinoform units of various geometry and

[50 years anniversary of Research Institute for Occupational Medicine and Human Ecology with Siberian Division of RAMSc].

Science.gov (United States)

Rukavishnikov, V S; Shaiakhmetov, S F; Gus'kova, T M

2010-01-01

The article covers main steps of establishment and development of Research Institute for Occupational medicine and Human ecology with Siberian Division of RAMSc over 50 years of activities, major results of research, contribution of the Institute personnel into development of hygienic science and practical medicine in Siberia.

Spatio-temporal analysis of agricultural land-use intensity across the Western Siberian grain belt.

Science.gov (United States)

Kühling, Insa; Broll, Gabriele; Trautz, Dieter

2016-02-15

The Western Siberian grain belt covers 1millionkm² in Asiatic Russia and is of global importance for agriculture. Massive land-use changes took place in that region after the dissolution of the Soviet Union and the collapse of the state farm system. Decreasing land-use intensity (LUI) in post-Soviet Western Siberia was observed on grassland due to declining livestock whilst on cropland trends of land abandonment reversed in the early 2000s. Recultivation of abandoned cropland as well as increasing fertilizer inputs and narrowing crop rotations led to increasing LUI on cropland during the last two decades. Beyond that general trend, no information is available about spatial distribution and magnitude but a crucial precondition for the development of strategies for sustainable land management. To quantify changes and patterns in LUI, we developed an intensity index that reflects the impacts of land-based agricultural production. Based on subnational yearly statistical data, we calculated two separate input-orientated indices for cropland and grassland, respectively. The indices were applied on two spatial scale: at seven provinces covering the Western Siberian grain belt (Altay Kray, Chelyabinsk, Kurgan, Novosibirsk, Omsk, Sverdlovsk and Tyumen) and at all districts of the central province Tyumen. The spatio-temporal analysis clearly showed opposite trends for the two land-use types: decreasing intensity on grassland (-0.015 LUI units per year) and intensification on cropland (+0.014 LUI units per year). Furthermore, a spatial concentration towards intensity centres occurred during transition from a planned to a market economy. A principal component analysis enabled the individual calculations of both land-use types to be combined and revealed a strong link between biophysical conditions and LUI. The findings clearly showed the need for having a different strategy for future sustainable land management for grassland (predominantly used by livestock of households

Nutrient cycling and ecosystem metabolism in boreal streams of the Central Siberian Plateau

Science.gov (United States)

Diemer, L.; McDowell, W. H.; Prokushkin, A. S.

2013-12-01

Arctic boreal streams are undergoing considerable change in carbon and nutrient biogeochemistry due to degrading permafrost and increasing fire activity. Recent studies show that fire increases transport of inorganic solutes from the boreal landscape to arctic streams in some regions; couple this with expected greater labile dissolved organic carbon (DOC) from deepening active layers, enhanced biomass production, and increased annual precipitation and boreal streams may experience greater in-stream primary production and respiration in the coming century. Little is known about the spatial and temporal dynamics of inorganic nutrients in relation to C availability in headwater streams of a major Arctic region, the Central Siberian Plateau. Our preliminary data of Central Siberian headwater streams show NO3 and PO4 concentrations near or below detection limits (e.g. nine samples taken in spring from a small stream near the Russian settlement of Tura averaged 10 μg/L NO3-N and 9.7 μg/L PO4-P), and recent studies in Central Siberia suggest that bioavailable organic matter and inorganic nutrients such as NO3 will likely increase with climate warming. We examined the fate of nutrients in Central Siberian streams using Tracer for Spiraling Curve Characterization (TASCC) additions of NO3, NH4, and PO4 along with conservative tracer, NaCl, in spring at high and low discharges in streams underlain by continuous permafrost in Central Siberia. We also sampled two sites in spring every 2 hours overnight for 24 hours to document any diel patterns in DOC and inorganic nutrients. Our results thus far show that NO3 uptake length may be strongly correlated with DOC concentration (a function of fire activity). Preliminary results also show that despite high discharge and cold temperatures (4-8°C) in mid to late spring, there appears to be biological activity stimulating a diel signal for NO3 with maximum concentration corresponding to low light (11 PM). Investigating the primary

Geological Structure of the Basement of Western and Eastern Parts of the West-Siberian Plain

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Ivanov, Kirill S.; Erokhin, Yuriy V.; Ponomarev, Vladimir S.; Pogromskaya, Olga E.; Berzin, Stepan V.

2016-01-01

The U-Pb dating (SHRIMP-II on zircon) was obtained for the first time from the basement of the West Siberian Plain in the Western half of the region. It is established that a large part of the protolith of the metamorphic depth in the Shaim-Kuznetsov meganticlinorium contained sedimentary late- and middle-Devonian rocks (395-358 million years).…

Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans

DEFF Research Database (Denmark)

Raghavan, Maanasa; Skoglund, Pontus; Graf, Kelly E.

2014-01-01

,000-year-old individual (MA-1), from Mal'ta in south-central Siberia, to an average depth of 1×. To our knowledge this is the oldest anatomically modern human genome reported to date. The MA-1 mitochondrial genome belongs to haplogroup U, which has also been found at high frequency among Upper Palaeolithic......The origins of the First Americans remain contentious. Although Native Americans seem to be genetically most closely related to east Asians, there is no consensus with regard to which specific Old World populations they are closest to. Here we sequence the draft genome of an approximately 24...... that the region was continuously occupied by humans throughout the Last Glacial Maximum. Our findings reveal that western Eurasian genetic signatures in modern-day Native Americans derive not only from post-Columbian admixture, as commonly thought, but also from a mixed ancestry of the First Americans....

Comparative genome and transcriptome analysis reveals distinctive surface characteristics and unique physiological potentials of Pseudomonas aeruginosa ATCC 27853

KAUST Repository

Cao, Huiluo

2017-06-12

Pseudomonas aeruginosa ATCC 27853 was isolated from a hospital blood specimen in 1971 and has been widely used as a model strain to survey antibiotics susceptibilities, biofilm development, and metabolic activities of Pseudomonas spp.. Although four draft genomes of P. aeruginosa ATCC 27853 have been sequenced, the complete genome of this strain is still lacking, hindering a comprehensive understanding of its physiology and functional genome.Here we sequenced and assembled the complete genome of P. aeruginosa ATCC 27853 using the Pacific Biosciences SMRT (PacBio) technology and Illumina sequencing platform. We found that accessory genes of ATCC 27853 including prophages and genomic islands (GIs) mainly contribute to the difference between P. aeruginosa ATCC 27853 and other P. aeruginosa strains. Seven prophages were identified within the genome of P. aeruginosa ATCC 27853. Of the predicted 25 GIs, three contain genes that encode monoxoygenases, dioxygenases and hydrolases that could be involved in the metabolism of aromatic compounds. Surveying virulence-related genes revealed that a series of genes that encode the B-band O-antigen of LPS are lacking in ATCC 27853. Distinctive SNPs in genes of cellular adhesion proteins such as type IV pili and flagella biosynthesis were also observed in this strain. Colony morphology analysis confirmed an enhanced biofilm formation capability of ATCC 27853 on solid agar surface compared to Pseudomonas aeruginosa PAO1. We then performed transcriptome analysis of ATCC 27853 and PAO1 using RNA-seq and compared the expression of orthologous genes to understand the functional genome and the genomic details underlying the distinctive colony morphogenesis. These analyses revealed an increased expression of genes involved in cellular adhesion and biofilm maturation such as type IV pili, exopolysaccharide and electron transport chain components in ATCC 27853 compared with PAO1. In addition, distinctive expression profiles of the

Exome Sequencing Provides Evidence of Polygenic Adaptation to a Fat-Rich Animal Diet in Indigenous Siberian Populations.

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Hsieh, PingHsun; Hallmark, Brian; Watkins, Joseph; Karafet, Tatiana M; Osipova, Ludmila P; Gutenkunst, Ryan N; Hammer, Michael F

2017-11-01

Siberia is one of the coldest environments on Earth and has great seasonal temperature variation. Long-term settlement in northern Siberia undoubtedly required biological adaptation to severe cold stress, dramatic variation in photoperiod, and limited food resources. In addition, recent archeological studies show that humans first occupied Siberia at least 45,000 years ago; yet our understanding of the demographic history of modern indigenous Siberians remains incomplete. In this study, we use whole-exome sequencing data from the Nganasans and Yakuts to infer the evolutionary history of these two indigenous Siberian populations. Recognizing the complexity of the adaptive process, we designed a model-based test to systematically search for signatures of polygenic selection. Our approach accounts for stochasticity in the demographic process and the hitchhiking effect of classic selective sweeps, as well as potential biases resulting from recombination rate and mutation rate heterogeneity. Our demographic inference shows that the Nganasans and Yakuts diverged ∼12,000-13,000 years ago from East-Asian ancestors in a process involving continuous gene flow. Our polygenic selection scan identifies seven candidate gene sets with Siberian-specific signals. Three of these gene sets are related to diet, especially to fat metabolism, consistent with the hypothesis of adaptation to a fat-rich animal diet. Additional testing rejects the effect of hitchhiking and favors a model in which selection yields small allele frequency changes at multiple unlinked genes. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

[Telomere length and phylogenetic relationship of Baikal and Siberian planarians (Turbellaria, Tricladida)].

Science.gov (United States)

Koroleva, A G; Evtushenko, E V; Timoshkin, O A; Vershinin, A V; Kiril'chik, S V

2013-01-01

Dynamics of the telomeric DNA (tDNA) and the phylogeny of the Baikal and Siberian planarians have been studied based on the analysis of the 18S rDNA and beta-actin gene fragments. A relationship between tDNA and the planarians size has been demonstrated. Giant planarians with a minor exception have longer tDNA than little planarians. Phylogenetic affinity between the species that have the stretched tracks of tDNA, big size and similar habitats may indicate possible role of tDNA in the development of the indefinite regenerative capacity of planarians.

Spin Flipping in the Presence of a Full Siberian Snake

International Nuclear Information System (INIS)

Blinov, B.B.; Anferov, V.A.; Derbenev, Y.S.; Kageya, T.; Krisch, A.D.; Lorenzon, W.; Ratner, L.G.; Sivers, D.W.; Sourkont, K.V.; Wong, V.K.; Chu, C.M.; Lee, S.Y.; Rinckel, T.; Schwandt, P.; Sperisen, F.; Przewoski, B. von; Sato, H.

1998-01-01

We have demonstrated for the first time spin flipping of a polarized proton beam stored in a ring containing a nearly 100% Siberian snake; we did this using a 'snake' depolarizing resonance induced by an rf solenoid magnet. By varying the rf solenoid close-quote s ramp time, frequency range, and voltage, we reached a spin-flip efficiency of about 91% . This spin-flip efficiency was probably reduced because the horizontal stable spin direction was not perpendicular to the longitudinal field of the rf solenoid, and was possibly reduced by nearby synchrotron sideband resonances. The planned use of a vertical rf dipole may improve the spin-flip efficiency. copyright 1998 The American Physical Society

TUBERCULOSIS IN SIBERIAN AND FAR EASTERN FEDERAL DISTRICTS (2007-2016

Directory of Open Access Journals (Sweden)

T. V. Alekseeva

2017-01-01

Full Text Available The article describes changes in the main tuberculosis epidemiological indicators in Siberian and Far Eastern Federal Districts over the last decade. The rate of changes was analyzed for 21 regions within two districts, total number and structure of those followed up by phthisiologists in 2007-2016 were compared. TB situation has not significantly improved since the drug resistance and HIV infection become more and more frequent, providing an indirect impact on the epidemiological indicators. It is very difficult to treat such categories of patients and these difficulties do not allow enhancing treatment efficiency and cause an abrupt growth of the costs per one patient, both financial and organizational ones.

Changes in the contents of nitrogen fractions with loosing vital capacity of the Siberian fir Abies sibirica Ledeb. seeds

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S. G. Prokushkin

2017-02-01

Full Text Available Siberian fir seeds often lose their germinating capacity during storage. This results from, among other factors, changing contents of nitrogen compounds in the seeds, especially those of protein fractions. This paper focuses on analyzing changes of these compounds in nonviable seeds of the species depending on ecological and conditions and stand location, as well as on tree growth class (Kraft growth classes I and IV. The contents of the total and protein nitrogen in the nonviable seeds of the trees of growth classes I and IV appeared to vary widely and to depend on stand location and seed location in the tree crown. The maximum contents were in the seeds located in the upper part of the crown. The seeds from the middle and lower crown parts contained much less total and protein nitrogen. The hard-to-solve protein fraction dominated over other protein fraction in the seeds from the upper part of the crowns of the trees of growth classes I and IV. However, this fraction, like prolamines, changed uniformly throughout the crowns, whereas seed glutelin content varied insignificantly among the crown parts. Albumins and globulins showed a uniform crown top-to-bottom decrease. A comparison of viable seed with unviable seeds for contents of the nitrogen forms revealed a marked decrease in the total and protein nitrogen in the latter, especially for the trees of growth class IV. The seeds that lost their germinating capacity exhibited increasingly hard-to-solve protein fraction and drastically decreasing albumins and globulins wherever the seeds were in the crown. Their glutelin and prolamine contents changed inconsiderably.The changes of the quantitative ratio between the protein fractions found by the study cause, along with other physiological and biochemical factors, the loss of viability of Siberian fir seeds during storage.

Vertebrate Herbivore Browsing on Neighboring Forage Species Increases the Growth and Dominance of Siberian Alder Across a Latitudinal Transect in Northern Alaska.

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McNeill, E. M.; Ruess, R. W.

2017-12-01

Vertebrate herbivores strongly influence plant growth and architecture, biogeochemical cycling, and successional dynamics in boreal and arctic ecosystems. One of the most notable impacts of vertebrate herbivory is on the growth and spread of alder, a chemically-defended, N-fixing shrub whose distribution in the Alaskan arctic has expanded dramatically over the past 60 years. Although herbivore effects on thin-leaf alder are well described for interior Alaskan floodplains, no work has been conducted on the effects of herbivores on Siberian alder (Alnus viridis spp fruticosa), despite the increasing importance of this species to high latitude ecosystems. We characterized browsing by snowshoe hares, moose, and willow ptarmigan on dominant shrub species across topo-edaphic sequences within 5 ecoregions along a 600 km latitudinal transect extending from interior Alaska to the North Slope. Ptarmigan browsed wind-blown lowland and alpine sites devoid of trees in all regions; moose browsed predominantly willow species in hardwood and mixed forests and were absent north of the Brooks Range; snowshoe hares selected habitats and forage based on their local density and vulnerability to predators. Browsing intensity on Siberian alder was either undetectable or low, limited primarily to hare browsing on young ramets in the northern boreal forest where hare density relative to forage availability is highest. Overall, alder height growth was positively correlated with levels of herbivory on competing shrub species. Our data support the hypothesis that vertebrate herbivore browsing is indirectly augmenting the growth, dominance, and possible spread of Siberian alder throughout its northern Alaskan range. Given the potential high rates of N-fixation inputs by Siberian alder, we believe herbivores are also having strong indirect effects on biogeochemical cycling and possibly C storage in these landscapes.

Heterogeneity in Neutrophil Microparticles Reveals Distinct Proteome and Functional Properties*

Science.gov (United States)

Dalli, Jesmond; Montero-Melendez, Trinidad; Norling, Lucy V; Yin, Xiaoke; Hinds, Charles; Haskard, Dorian; Mayr, Manuel; Perretti, Mauro

2013-01-01

Altered plasma neutrophil microparticle levels have recently been implicated in a number of vascular and inflammatory diseases, yet our understanding of their actions is very limited. Herein, we investigate the proteome of neutrophil microparticles in order to shed light on their biological actions. Stimulation of human neutrophils, either in suspension or adherent to an endothelial monolayer, led to the production of microparticles containing >400 distinct proteins with only 223 being shared by the two subsets. For instance, postadherent microparticles were enriched in alpha-2 macroglobulin and ceruloplasmin, whereas microparticles produced by neutrophils in suspension were abundant in heat shock 70 kDa protein 1. Annexin A1 and lactotransferrin were expressed in both microparticle subsets. We next determined relative abundance of these proteins in three types of human microparticle samples: healthy volunteer plasma, plasma of septic patients and skin blister exudates finding that these proteins were differentially expressed on neutrophil microparticles from these samples reflecting in part the expression profiles we found in vitro. Functional assessment of the neutrophil microparticles subsets demonstrated that in response to direct stimulation neutrophil microparticles produced reactive oxygen species and leukotriene B4 as well as locomoted toward a chemotactic gradient. Finally, we investigated the actions of the two neutrophil microparticles subsets described herein on target cell responses. Microarray analysis with human primary endothelial cells incubated with either microparticle subset revealed a discrete modulation of endothelial cell gene expression profile. These findings demonstrate that neutrophil microparticles are heterogenous and can deliver packaged information propagating the activation status of the parent cell, potentially exerting novel and fundamental roles both under homeostatic and disease conditions. PMID:23660474

Reactivity of Pleistocene aged organic matter in the Siberian Arctic

Science.gov (United States)

Davydov, S.; Vonk, J. E.; Mann, P. J.; Davydova, A.; Sobczak, W. V.; Schade, J. D.; Bulygina, E. B.; Zimov, S. A.; Holmes, R. M.

2011-12-01

Half of the global stock of soil organic carbon (OC) is stored in Arctic permafrost. About one third of this pool consists of so-called yedoma, organic-rich deposits that were formed during the Pleistocene. Previous studies show rapid respiration of yedoma upon thawing, with the potential release of large quantities of relict OC into the contemporary C cycle. The fluvial and coastal reactivity of this OC, however, and its fate remain unclear. Duvannyi Yar is a well-studied yedoma exposure on the banks of Kolyma River in Northeastern Siberia. It can serve as a model for the >7000 km long East Siberian Arctic coastline that is dominated by similarly exposed yedoma cliffs, and is increasingly vulnerable to erosion with climate warming-induced decreases in sea-ice, and increases in storms and wave-fetch. Permafrost thaw causes the slopes of Duvannyi Yar to retreat 3-5 m/y, producing mudstreams that drain into the Kolyma River. These streams are heavily loaded with freshly thawed yedoma sediments (ca. 650 g/L; POC ca. 10 g/L; DOC ca. 150 mg/L). Partial CO2 pressure in these streams was on average 8400 ppm (stdev 2100; n=4) whereas the Kolyma River at the stream mouth contained CO2 concentrations of ca. 900 ppm (stdev 90; n=4), suggesting substantial outgassing during transport. We performed biological oxygen demand assays in combination with a set of incubations to estimate OC lability in a range of dilutions of Duvannyi Yar water with Kolyma River and East Siberian Sea water, in combination with nutrient and enzymatic activity rate analysis to identify potential limitation processes. Our goal was to assess carbon consumption rates and the effect of different microbial communities along its transport towards the ocean. O2 loss (% after 24h) increased significantly from undiluted Kolyma water to increasingly spiked dilutions with filtered Duvannyi Yar filtered water; 0%/0.5%/1%/10%/100% dilutions showed O2 losses of 1.6%, 3.5%, 5.1%, 13% and 35%, respectively. However, C

Susceptibility of the Siberian polecat to subcutaneous and oral Yersinia pestis exposure

Science.gov (United States)

Castle, K.T.; Biggins, D.; Carter, L.G.; Chu, M.; Innes, Kim; Wimsatt, J.

2001-01-01

To determine if the Siberian polecat (Mustela eversmannii) represents a suitable model for the study of plague pathogenesis and prevention in the black-footed ferret (Mustela nigripes), polecats were exposed to 103, 107, or 1010 Yersinia pestis organisms by subcutaneous injection; an additional group was exposed to Y. pestis via ingestion of a plague-killed mouse. Plague killed 88% of polecats exposed to Y. pestis (71% mortality in the 103 group, 100% mortality in the 107 and 1010 groups, and 83% mortality in the mouse-fed group). Within the challenged group, mean day of death post-challenge ranged from 3.6 to 7.6 days; all polecats died on or before day 12 post-challenge. Animals receiving the lowest parenteral dose survived significantly longer than those receiving higher parenteral doses. Within challenged animals, mean survival time was lower in those presenting with significant weight loss by day 3, lethargy, and low fecal output; time to onset of lethargy and other signs was also related to risk of dying and/or plague dose. Six polecats developed serum antibody titers to the Y. pestis F1 protein. Three seropositive polecats survived the initial challenge and a subsequent exposure to a plague-killed mouse, while two seropositive animals later died. This study confirms that the Siberian polecat is susceptible to plague and suggests that this species will offer an appropriate surrogate for black-footed ferrets in future plague studies and related vaccine trials.

Hypothalamic over-expression of VGF in the Siberian hamster increases energy expenditure and reduces body weight gain.

Science.gov (United States)

Lewis, Jo E; Brameld, John M; Hill, Phil; Cocco, Cristina; Noli, Barbara; Ferri, Gian-Luca; Barrett, Perry; Ebling, Francis J P; Jethwa, Preeti H

2017-01-01

VGF (non-acronymic) was first highlighted to have a role in energy homeostasis through experiments involving dietary manipulation in mice. Fasting increased VGF mRNA in the Arc and levels were subsequently reduced upon refeeding. This anabolic role for VGF was supported by observations in a VGF null (VGF-/-) mouse and in the diet-induced and gold-thioglucose obese mice. However, this anabolic role for VGF has not been supported by a number of subsequent studies investigating the physiological effects of VGF-derived peptides. Intracerebroventricular (ICV) infusion of TLQP-21 increased resting energy expenditure and rectal temperature in mice and protected against diet-induced obesity. Similarly, ICV infusion of TLQP-21 into Siberian hamsters significantly reduced body weight, but this was due to a decrease in food intake, with no effect on energy expenditure. Subsequently NERP-2 was shown to increase food intake in rats via the orexin system, suggesting opposing roles for these VGF-derived peptides. Thus to further elucidate the role of hypothalamic VGF in the regulation of energy homeostasis we utilised a recombinant adeno-associated viral vector to over-express VGF in adult male Siberian hamsters, thus avoiding any developmental effects or associated functional compensation. Initially, hypothalamic over-expression of VGF in adult Siberian hamsters produced no effect on metabolic parameters, but by 12 weeks post-infusion hamsters had increased oxygen consumption and a tendency to increased carbon dioxide production; this attenuated body weight gain, reduced interscapular white adipose tissue and resulted in a compensatory increase in food intake. These observed changes in energy expenditure and food intake were associated with an increase in the hypothalamic contents of the VGF-derived peptides AQEE, TLQP and NERP-2. The complex phenotype of the VGF-/- mice is a likely consequence of global ablation of the gene and its derived peptides during development, as well

Long-term trends in radial growth of Siberian spruce and Scots pine in Komi Republic (northwestern Russia)

Energy Technology Data Exchange (ETDEWEB)

Lopatin, E. (Univ. of Joensuu (Finland)); Kolstroem, T. (Russian Academy of Sciences, Syktyvkar (Russian Federation)); Spiecker, H. (Univ. of Freiburg (Germany))

2008-07-01

Komi is situated on the eastern boundary of the European part of Russia, in the boreal region where large areas of natural forest still exist. Using radial growth measurements it was possible to attain positive long-term trends of growth in Scots pine (Pinus sylvestris) and Siberian spruce (Picea obovata) in the Komi Republic. Increases in the radial growth of Siberian spruce in the forest-tundra were 134% and in the northern taiga zone 35% over successive 50-year periods from 1901 to 1950 and from 1951 to 2000. Respectively, in the middle taiga zone a 76% increase in radial growth was found (over 100 years), whilst in the southern taiga zone the changes were not statistically significant. The increase in radial growth of Scots pine in the northern taiga zone was 32%. In the middle taiga zone the radial growth increase in Scots pine was 55% and in the southern taiga zone the changes were not statistically significant. The long-term growth trends of Komi were compared with those in other parts of Europe. (orig.)

Distinct herpesvirus resistances and immune responses of three gynogenetic clones of gibel carp revealed by comprehensive transcriptomes.

Science.gov (United States)

Gao, Fan-Xiang; Wang, Yang; Zhang, Qi-Ya; Mou, Cheng-Yan; Li, Zhi; Deng, Yuan-Sheng; Zhou, Li; Gui, Jian-Fang

2017-07-24

Gibel carp is an important aquaculture species in China, and a herpesvirus, called as Carassius auratus herpesvirus (CaHV), has hampered the aquaculture development. Diverse gynogenetic clones of gibel carp have been identified or created, and some of them have been used as aquaculture varieties, but their resistances to herpesvirus and the underlying mechanism remain unknown. To reveal their susceptibility differences, we firstly performed herpesvirus challenge experiments in three gynogenetic clones of gibel carp, including the leading variety clone A + , candidate variety clone F and wild clone H. Three clones showed distinct resistances to CaHV. Moreover, 8772, 8679 and 10,982 differentially expressed unigenes (DEUs) were identified from comparative transcriptomes between diseased individuals and control individuals of clone A + , F and H, respectively. Comprehensive analysis of the shared DEUs in all three clones displayed common defense pathways to the herpesvirus infection, activating IFN system and suppressing complements. KEGG pathway analysis of specifically changed DEUs in respective clones revealed distinct immune responses to the herpesvirus infection. The DEU numbers identified from clone H in KEGG immune-related pathways, such as "chemokine signaling pathway", "Toll-like receptor signaling pathway" and others, were remarkably much more than those from clone A + and F. Several IFN-related genes, including Mx1, viperin, PKR and others, showed higher increases in the resistant clone H than that in the others. IFNphi3, IFI44-like and Gig2 displayed the highest expression in clone F and IRF1 uniquely increased in susceptible clone A + . In contrast to strong immune defense in resistant clone H, susceptible clone A + showed remarkable up-regulation of genes related to apoptosis or death, indicating that clone A + failed to resist virus offensive and evidently induced apoptosis or death. Our study is the first attempt to screen distinct resistances and

A chimeric prokaryotic pentameric ligand–gated channel reveals distinct pathways of activation

Science.gov (United States)

Schmandt, Nicolaus; Velisetty, Phanindra; Chalamalasetti, Sreevatsa V.; Stein, Richard A.; Bonner, Ross; Talley, Lauren; Parker, Mark D.; Mchaourab, Hassane S.; Yee, Vivien C.; Lodowski, David T.

2015-01-01

Recent high resolution structures of several pentameric ligand–gated ion channels have provided unprecedented details of their molecular architecture. However, the conformational dynamics and structural rearrangements that underlie gating and allosteric modulation remain poorly understood. We used a combination of electrophysiology, double electron–electron resonance (DEER) spectroscopy, and x-ray crystallography to investigate activation mechanisms in a novel functional chimera with the extracellular domain (ECD) of amine-gated Erwinia chrysanthemi ligand–gated ion channel, which is activated by primary amines, and the transmembrane domain of Gloeobacter violaceus ligand–gated ion channel, which is activated by protons. We found that the chimera was independently gated by primary amines and by protons. The crystal structure of the chimera in its resting state, at pH 7.0 and in the absence of primary amines, revealed a closed-pore conformation and an ECD that is twisted with respect to the transmembrane region. Amine- and pH-induced conformational changes measured by DEER spectroscopy showed that the chimera exhibits a dual mode of gating that preserves the distinct conformational changes of the parent channels. Collectively, our findings shed light on both conserved and divergent features of gating mechanisms in this class of channels, and will facilitate the design of better allosteric modulators. PMID:26415570

Deglacial remobilization of permafrost carbon to sediments along the East Siberian Arctic Seas

Science.gov (United States)

Martens, J.; Wild, B.; Bröder, L.; Andersson, A.; Pearce, C.; O'Regan, M.; Jakobsson, M.; Tesi, T.; Muschitiello, F.; Sköld, M.; Semiletov, I. P.; Dudarev, O.; Gustafsson, O.

2017-12-01

Current climate change is expected to thaw large quantities of permafrost carbon (PF-C) and expose it to degradation which emits greenhouse gases (i.e. CO2 and CH4). Warming causes a gradual deepening of the seasonally thawed active layer surface of permafrost soils, but also the abrupt collapse of deeper Ice Complex Deposits (ICD), especially along Siberian coastlines. It was recently hypothesized that past warming already induced large-scale permafrost degradation after the last glacial, which ultimately amplified climate forcing. We here assess the mobilization of PF-C to East Siberian Arctic Sea sediments during these warming periods. We perform source apportionment using bulk carbon isotopes (ΔΔ14C, δ13C) together with terrestrial biomarkers (CuO-derived lignin phenols) as indicators for PF-C transfer. We apply these techniques to sediment cores (SWERUS-L2) from the Chukchi Sea (4-PC1) and the southern Lomonosov Ridge (31-PC1). We found that PF-C fluxes during the Bølling-Allerød warming (14.7 to 12.7 cal ka BP), the Younger Dryas cooling (12.7 to 11.7 cal ka BP) and the early Holocene warming (until 11 cal ka BP) were overall higher than mid and late Holocene fluxes. In the Chukchi Sea, PF-C burial was 2x higher during the deglaciation (7.2 g m-2 a-1) than in the mid and late Holocene (3.6 g m-2 a-1), and ICD were the dominant source of PF-C (79.1%). Smaller fractions originated from the active layer (9.1%) and marine sources (11.7%). We conclude that thermo-erosion of ICD released large amounts of PF-C to the Chukchi Sea, likely driven by climate warming and the deglacial sea level rise. This contrasts to earlier analyses of Laptev Sea sediments where active layer material from river transport dominated the carbon flux. Preliminary data on lignin phenol concentrations of Lomonosov Ridge sediments suggest that the postglacial remobilization of PF-C was one order of magnitude higher (10x) than during both the preceding glacial and the subsequent Holocene

Reserve Growth in Oil Fields of West Siberian Basin, Russia

Science.gov (United States)

Verma, Mahendra K.; Ulmishek, Gregory F.

2006-01-01

Although reserve (or field) growth has proven to be an important factor contributing to new reserves in mature petroleum basins, it is still a poorly understood phenomenon. Limited studies show that the magnitude of reserve growth is controlled by several major factors, including (1) the reserve booking and reporting requirements in each country, (2) improvements in reservoir characterization and simulation, (3) application of enhanced oil recovery techniques, and (4) the discovery of new and extensions of known pools in discovered fields. Various combinations of these factors can affect the estimates of proven reserves in particular fields and may dictate repeated estimations of reserves during a field's life. This study explores the reserve growth in the 42 largest oil fields in the West Siberian Basin, which contain about 55 percent of the basin's total oil reserves. The West Siberian Basin occupies a vast swampy plain between the Ural Mountains and the Yenisey River, and extends offshore into the Kara Sea; it is the richest petroleum province in Russia. About 600 oil and gas fields with original reserves of 144 billion barrels of oil (BBO) and more than 1,200 trillion cubic feet of gas (TCFG) have been discovered. The principal oil reserves and most of the oil fields are in the southern half of the basin, whereas the northern half contains mainly gas reserves. Sedimentary strata in the basin consist of Upper Triassic through Tertiary clastic rocks. Most oil is produced from Neocomian (Lower Cretaceous) marine to deltaic sandstone reservoirs, although substantial oil reserves are also in the marine Upper Jurassic and continental to paralic Lower to Middle Jurassic sequences. The majority of oil fields are in structural traps, which are gentle, platform-type anticlines with closures ranging from several tens of meters to as much as 150 meters (490 feet). Fields producing from stratigraphic traps are generally smaller except for the giant Talin field which

Siberian Regional Identity in the Context of Historical Consciousness (Content Analysis of Tomsk Regional Media

Directory of Open Access Journals (Sweden)

A V Bocharov

2011-12-01

Full Text Available The article presents a model to study the Siberian regional identity in the context of historical consciousness, as well as the results of its practical application in the content analysis of the publications by the Tomsk regional media. On the basis of the content analysis procedures the author demonstrates how, through historical memory, the regional identity is formed and manifested in the regional media in various spheres of society.

Variety, State and Origin of Drained Thaw Lake Basins in West-Siberian North

Science.gov (United States)

Kirpotin, S.; Polishchuk, Y.; Bryksina, N.; Sugaipova, A.; Pokrovsky, O.; Shirokova, L.; Kouraev, A.; Zakharova, E.; Kolmakova, M.; Dupre, B.

2009-04-01

Drained thaw lake basins in Western Siberia have a local name "khasyreis" [1]. Khasyreis as well as lakes, ponds and frozen mounds are invariable element of sub-arctic frozen peat bogs - palsas and tundra landscapes. In some areas of West-Siberian sub-arctic khasyreis occupy up to 40-50% of total lake area. Sometimes their concentration is so high that we call such places ‘khasyrei's fields". Khasyreis are part of the natural cycle of palsa complex development [1], but their origin is not continuous and uniform in time and, according to our opinion, there were periods of more intensive lake drainage and khasyrei development accordingly. These times were corresponding with epochs of climatic warming and today we have faced with one of them. So, last years this process was sufficiently activated in the south part of West-Siberian sub-arctic [2]. It was discovered that in the zone of continuous permafrost thermokarst lakes have expanded their areas by about 10-12%, but in the zone of discontinuous permafrost the process of their drainage prevails. These features are connected with the thickness of peat layers which gradually decreases to the North, and thus have reduced the opportunity for lake drainage in northern areas. The most typical way of khasyrei origin is their drainage to the bigger lakes which are always situated on the lower levels and works as a collecting funnels providing drainage of smaller lakes. The lower level of the big lake appeared when the lake takes a critical mass of water enough for subsidence of the lake bottom due to the melting of underlaying rocks [2]. Another one way of lake drainage is the lake intercept by any river. Lake drainage to the subsurface (underlaying rocks) as some authors think [3, 4] is not possible in Western Siberia, because the thickness of permafrost is at list 500 m here being safe confining bed. We mark out few stages of khasyrei development: freshly drained, young, mature and old. This row reflects stages of

Gluconeogenesis during starvation and refeeding phase is affected by previous dietary carbohydrates levels and a glucose stimuli during early life in Siberian sturgeon (Acipenser baerii

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Xiaofang Liang

2017-09-01

Full Text Available Gluconeogenesis responses was assessed during a short starvation period and subsequent refeeding in Siberian sturgeon (Acipenser baerii previously fed different dietary carbohydrates levels and experienced to a glucose stimuli during early life. The sturgeon larvae were previously fed either a high glucose diet (G or a low glucose diet (F from the first feeding to yolk absorption (8 to 12 d post-hatching [dph]. Each group of fish was sub-divided into 2 treatments at 13 dph and was fed either a high-carbohydrate diet (H or a low carbohydrate diet (L until 20 wk. In the current study, the fish in 4 groups (GL, FL, GH and FH were experienced to starvation for 21 d following by re-feeding of their corresponding diets for 21 d. Fish were sampled at postprandial 6 and 24 h before starvation (P6h and P24h, starvation 7, 14 and 21 d (S7, S14 and S21 and 1, 7, 14 and 21 d during refeeding (R1, R7, R14 and R21. Plasma samples during refeeding were taken at P6h at each time point. Glycaemia levels, liver and muscle glycogen contents, activities and mRNA levels of hepatic gluconeogenic enzymes were examined. We found that both dietary carbohydrate levels and early glucose stimuli significantly affected the metabolic responses to starvation and refeeding in Siberian sturgeon (P < 0.05. During prolonged starvation, Siberian sturgeon firstly mobilized the liver glycogen and then improved gluconeogenesis when the dietary carbohydrates were abundant, whereas preserved the liver glycogen stores at a stable level and more effectively promoted gluconeogenesis when the dietary carbohydrates are absent to maintain glucose homoeostasis. During refeeding, as most teleostean, Siberian sturgeon failed controlling the activities and mRNA levels of phosphoenolpyruvate carboxykinase cytosolic forms (PEPCK-C, fructose-1,6-bisphosphatase (FBPase, but particularly controlled phosphoenolpyruvate carboxykinase mitochondrial forms (PEPCK-M activities and mRNA expression

Numerical studies of Siberian snakes and spin rotators for RHIC

International Nuclear Information System (INIS)

Luccio, A.

1995-01-01

For the program of polarized protons in RHIC, two Siberian snakes and four spin rotators per ring will be used. The Snakes will produce a complete spin flip. Spin Rotators, in pairs, will rotate the spin from the vertical direction to the horizontal plane at a given insertion, and back to the vertical after the insertion. Snakes, 180 degrees apart and with their axis of spin precession at 90 degrees to each other, are an effective means to avoid depolarization of the proton beam in traversing resonances. Classical snakes and rotators are made with magnetic solenoids or with a sequence of magnetic dipoles with fields alternately directed in the radial and vertical direction. Another possibility is to use helical magnets, essentially twisted dipoles, in which the field, transverse the axis of the magnet, continuously rotates as the particles proceed along it. After some comparative studies, the authors decided to adopt for RHIC an elegant solution with four helical magnets both for the snakes and the rotators proposed by Shatunov and Ptitsin. In order to simplify the construction of the magnets and to minimize cost, four identical super conducting helical modules will be used for each device. Snakes will be built with four right-handed helices. Spin rotators with two right-handed and two left-handed helices. The maximum field will be limited to 4 Tesla. While small bore helical undulators have been built for free electron lasers, large super conducting helical magnets have not been built yet. In spite of this difficulty, this choice is dictated by some distinctive advantages of helical over more conventional transverse snakes/rotators: (i) the devices are modular, they can be built with arrangements of identical modules, (ii) the maximum orbit excursion in the magnet is smaller, (iii) orbit excursion is independent from the separation between adjacent magnets, (iv) they allow an easier control of the spin rotation and the orientation of the spin precession axis

Endogenous lipid (cholesterol) pneumonia in three captive Siberian tigers (Panthera tigris altaica).

Science.gov (United States)

Bollo, Enrico; Scaglione, Frine Eleonora; Chiappino, Laura; Sereno, Alessandra; Triberti, Orfeo; Schröder, Cathrin

2012-05-01

During the years 2009-2011, 7 Siberian tigers (Panthera tigris altaica), aged between 2 and 14 years, from the Safaripark of Pombia were referred for necropsy to the Department of Animal Pathology of the University of Turin (Italy). Three tigers, aged 10 (2 animals) and 14 years, had multifocal, irregularly distributed, white, soft, subpleural, 3-mm nodules scattered throughout the lungs. Histologically, there was a marked infiltration of macrophages, with foamy cytoplasm, and multinucleate giant cells interspersed with numerous clusters of cholesterol clefts. A mild lymphocytic infiltration was localized around the lesion. The findings were consistent with endogenous lipid pneumonia, which was considered an incidental finding of no clinical significance.

Net ecosystem exchange and energy fluxes measured with the eddy covariance technique in a western Siberian bog

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P. Alekseychik

2017-08-01

Full Text Available Very few studies of ecosystem–atmosphere exchange involving eddy covariance data have been conducted in Siberia, with none in the western Siberian middle taiga. This work provides the first estimates of carbon dioxide (CO2 and energy budgets in a typical bog of the western Siberian middle taiga based on May–August measurements in 2015. The footprint of measured fluxes consisted of a homogeneous mixture of tree-covered ridges and hollows with the vegetation represented by typical sedges and shrubs. Generally, the surface exchange rates resembled those of pine-covered bogs elsewhere. The surface energy balance closure approached 100 %. Net CO2 uptake was comparatively high, summing up to 202 gC m−2 for the four measurement months, while the Bowen ratio was seasonally stable at 28 %. The ecosystem turned into a net CO2 source during several front passage events in June and July. The periods of heavy rain helped keep the water table at a sustainably high level, preventing a usual drawdown in summer. However, because of the cloudy and rainy weather, the observed fluxes might rather represent the special weather conditions of 2015 than their typical magnitudes.

Highly distinct chromosomal structures in cowpea (Vigna unguiculata), as revealed by molecular cytogenetic analysis.

Science.gov (United States)

Iwata-Otsubo, Aiko; Lin, Jer-Young; Gill, Navdeep; Jackson, Scott A

2016-05-01

Cowpea (Vigna unguiculata (L.) Walp) is an important legume, particularly in developing countries. However, little is known about its genome or chromosome structure. We used molecular cytogenetics to characterize the structure of pachytene chromosomes to advance our knowledge of chromosome and genome organization of cowpea. Our data showed that cowpea has highly distinct chromosomal structures that are cytologically visible as brightly DAPI-stained heterochromatic regions. Analysis of the repetitive fraction of the cowpea genome present at centromeric and pericentromeric regions confirmed that two retrotransposons are major components of pericentromeric regions and that a 455-bp tandem repeat is found at seven out of 11 centromere pairs in cowpea. These repeats likely evolved after the divergence of cowpea from common bean and form chromosomal structure unique to cowpea. The integration of cowpea genetic and physical chromosome maps reveals potential regions of suppressed recombination due to condensed heterochromatin and a lack of pairing in a few chromosomal termini. This study provides fundamental knowledge on cowpea chromosome structure and molecular cytogenetics tools for further chromosome studies.

Modulation of Sea Ice Melt Onset and Retreat in the Laptev Sea by the Timing of Snow Retreat in the West Siberian Plain

Science.gov (United States)

Crawford, A. D.; Stroeve, J.; Serreze, M. C.; Rajagopalan, B.; Horvath, S.

2017-12-01

As much of the Arctic Ocean transitions to ice-free conditions in summer, efforts have increased to improve seasonal forecasts of not only sea ice extent, but also the timing of melt onset and retreat. This research investigates the potential of regional terrestrial snow retreat in spring as a predictor for subsequent sea ice melt onset and retreat in Arctic seas. One pathway involves earlier snow retreat enhancing atmospheric moisture content, which increases downwelling longwave radiation over sea ice cover downstream. Another pathway involves manipulation of jet stream behavior, which may affect the sea ice pack via both dynamic and thermodynamic processes. Although several possible connections between snow and sea ice regions are identified using a mutual information criterion, the physical mechanisms linking snow retreat and sea ice phenology are most clearly exemplified by variability of snow retreat in the West Siberian Plain impacting melt onset and sea ice retreat in the Laptev Sea. The detrended time series of snow retreat in the West Siberian Plain explains 26% of the detrended variance in Laptev Sea melt onset (29% for sea ice retreat). With modest predictive skill and an average time lag of 53 (88) days between snow retreat and sea ice melt onset (retreat), West Siberian Plains snow retreat is useful for refining seasonal sea ice predictions in the Laptev Sea.

Community Organization of Siberian Coachmen in Late XVI – XVII Centuries

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Oleg V. Semenov

2014-06-01

Full Text Available The article, basing on the wide range of archival data, mostly introduced into scientific use for the first time, studies communal (secular and church organization of Siberian coachmen in late XVI – XVII centuries. The paper touches upon the issue, concerning the time of its establishment, thoroughly characterizes the structure, functions and officials. The features of interrelation between coachmen ‘world’ and state and other corporate communities of the region are showed. The conclusion that, despite the dependence on the authorities, the processes of bureaucratization and the growth of the villeinage trends, common for the country, coachmen played significant role in the social life of Siberia is made. They intensively protected their interests and forced the government to consider them.

Orbital parameters of proton and deuteron beams in the NICA collider with solenoid Siberian snakes

International Nuclear Information System (INIS)

Kovalenko, A D; Butenko, A V; Kekelidze, V D; Mikhaylov, V A; Kondratenko, M A; Filatov, Yu N; Kondratenko, A M

2016-01-01

Two solenoid Siberian snakes are required to obtain ion polarization in the “spin transparency” mode of the NICA collider. The field integrals of the solenoid snakes for protons and deuterons at maximum momentum of 13.5 GeV/c are equal to 2×50 T·m and 2×160 T·m respectively. The snakes introduce strong betatron oscillation coupling. The calculations of orbital parameters of proton and deuteron beams in NICA collider with solenoid snakes are presented. (paper)

Single Particle Tracking reveals two distinct environments for CD4 receptors at the surface of living T lymphocytes

International Nuclear Information System (INIS)

Mascalchi, Patrice; Lamort, Anne Sophie; Salomé, Laurence; Dumas, Fabrice

2012-01-01

Highlights: ► We studied the diffusion of single CD4 receptors on living lymphocytes. ► This study reveals that CD4 receptors have either a random or confined diffusion. ► The dynamics of unconfined CD4 receptors was accelerated by a temperature raise. ► The dynamics of confined CD4 receptors was unchanged by a temperature raise. ► Our results suggest the existence of two different environments for CD4 receptors. -- Abstract: We investigated the lateral diffusion of the HIV receptor CD4 at the surface of T lymphocytes at 20 °C and 37 °C by Single Particle Tracking using Quantum Dots. We found that the receptors presented two major distinct behaviors that were not equally affected by temperature changes. About half of the receptors showed a random diffusion with a diffusion coefficient increasing upon raising the temperature. The other half of the receptors was permanently or transiently confined with unchanged dynamics on raising the temperature. These observations suggest that two distinct subpopulations of CD4 receptors with different environments are present at the surface of living T lymphocytes.

Genetic analysis and ethnic affinities from two Scytho-Siberian skeletons.

Science.gov (United States)

Ricaut, François-Xavier; Keyser-Tracqui, Christine; Cammaert, Laurence; Crubézy, Eric; Ludes, Bertrand

2004-04-01

We extracted DNA from two skeletons belonging to the Sytho-Siberian population, which were excavated from the Sebÿstei site (dating back 2,500 years) in the Altai Republic (Central Asia). Ancient DNA was analyzed by autosomal short tandem repeats (STRs) and by the sequencing of the hypervariable region 1 (HV1) of the mitochondrial DNA (mtDNA) control region. The results showed that these two skeletons were not close relatives. Moreover, their haplogroups were characteristic of Asian populations. Comparison with the haplogroup of 3,523 Asian and American individuals linked one skeleton with a putative ancestral paleo-Asiatic population and the other with Chinese populations. It appears that the genetic study of ancient populations of Central Asia brings important elements to the understanding of human population movements in Asia. Copyright 2003 Wiley-Liss, Inc.

The Siberian Students in Research, Cultural and Social Life of the Region in the Late XIX – Early XX centuries

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Oksana V. Ustinova

2017-03-01

Full Text Available The article is devoted to the study of the role and place of students in the Siberian scientific-research and cultural-educational life of the region. It is shown that high moral ideals and a desire to help people in need be useful to its edge and to society in general – describe the ideas, common in the student's environment at the turn of XIX – XX centuries. Based on the analysis of archival materials and scientific literature, it was found that the students showed during this period, an increased desire to participate in social and cultural life of Siberia and the whole country. However, this participation in different ways manifested in the minds and actions of young people. Some students, actively engage in the cultural life of the region, entered in the companies involved in charity work, academic research, literary and theatrical art, medicine, advanced study of philosophy, technical processes, etc. At universities created various thematic interest groups, on a territorial basis – numerous fraternities, a nobility of purpose in the form of moral and material support of their members. However, some Siberian students in their own way understood his own mission in social processes, including under the form of participation in legal societies, clubs or fraternities in the activities of political and campaign focus, in the meetings discussing ideas about the possibilities of revolution, as expected, from their point of view, progress and prosperity in case of their implementation. Also in this period, there are illegal organizations that engage some students of Siberian universities. The activities of such organizations is highly political in nature.

Comprehensive profiling of DNA methylation in colorectal cancer reveals subgroups with distinct clinicopathological and molecular features

International Nuclear Information System (INIS)

Ang, Pei Woon; Soong, Richie; Loh, Marie; Liem, Natalia; Lim, Pei Li; Grieu, Fabienne; Vaithilingam, Aparna; Platell, Cameron; Yong, Wei Peng; Iacopetta, Barry

2010-01-01

Most previous studies of the CpG island methylator phenotype (CIMP) in colorectal cancer (CRC) have been conducted on a relatively small numbers of CpG sites. In the present study we performed comprehensive DNA methylation profiling of CRC with the aim of characterizing CIMP subgroups. DNA methylation at 1,505 CpG sites in 807 cancer-related genes was evaluated using the Illumina GoldenGate ® methylation array in 28 normal colonic mucosa and 91 consecutive CRC samples. Methylation data was analyzed using unsupervised hierarchical clustering. CIMP subgroups were compared for various clinicopathological and molecular features including patient age, tumor site, microsatellite instability (MSI), methylation at a consensus panel of CpG islands and mutations in BRAF and KRAS. A total of 202 CpG sites were differentially methylated between tumor and normal tissue. Unsupervised hierarchical clustering of methylation data from these sites revealed the existence of three CRC subgroups referred to as CIMP-low (CIMP-L, 21% of cases), CIMP-mid (CIMP-M, 14%) and CIMP-high (CIMP-H, 65%). In comparison to CIMP-L tumors, CIMP-H tumors were more often located in the proximal colon and showed more frequent mutation of KRAS and BRAF (P < 0.001). Comprehensive DNA methylation profiling identified three CRC subgroups with distinctive clinicopathological and molecular features. This study suggests that both KRAS and BRAF mutations are involved with the CIMP-H pathway of CRC rather than with distinct CIMP subgroups

Comprehensive profiling of DNA methylation in colorectal cancer reveals subgroups with distinct clinicopathological and molecular features

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Vaithilingam Aparna

2010-05-01

Full Text Available Abstract Background Most previous studies of the CpG island methylator phenotype (CIMP in colorectal cancer (CRC have been conducted on a relatively small numbers of CpG sites. In the present study we performed comprehensive DNA methylation profiling of CRC with the aim of characterizing CIMP subgroups. Methods DNA methylation at 1,505 CpG sites in 807 cancer-related genes was evaluated using the Illumina GoldenGate® methylation array in 28 normal colonic mucosa and 91 consecutive CRC samples. Methylation data was analyzed using unsupervised hierarchical clustering. CIMP subgroups were compared for various clinicopathological and molecular features including patient age, tumor site, microsatellite instability (MSI, methylation at a consensus panel of CpG islands and mutations in BRAF and KRAS. Results A total of 202 CpG sites were differentially methylated between tumor and normal tissue. Unsupervised hierarchical clustering of methylation data from these sites revealed the existence of three CRC subgroups referred to as CIMP-low (CIMP-L, 21% of cases, CIMP-mid (CIMP-M, 14% and CIMP-high (CIMP-H, 65%. In comparison to CIMP-L tumors, CIMP-H tumors were more often located in the proximal colon and showed more frequent mutation of KRAS and BRAF (P Conclusions Comprehensive DNA methylation profiling identified three CRC subgroups with distinctive clinicopathological and molecular features. This study suggests that both KRAS and BRAF mutations are involved with the CIMP-H pathway of CRC rather than with distinct CIMP subgroups.

Advanced inorganic fluorides. Proceedings of the Second International Siberian workshop INTERSIBFLUORINE-2006

International Nuclear Information System (INIS)

Volkov, V.V.; Mit'kin, V.N.; Bujnovskij, A.S.; Sofronov, V.L.

2006-01-01

Proceedings of the Second International Siberian workshop ISIF-2006 on modern inorganic fluorides contain full author's texts of 82 plenary reports and posters on the main trends in chemistry and technology of inorganic fluorides and their various applications. The following new trends are reflected in the ISIF-2006 Proceedings versus the ISIF-2003 ones: production and use of of nano-sized systems and materials based on fluoride phases and fluorinating systems; chemistry of fluorofullerenes, fluorides of graphite and carbon materials; development of research and technical principles of economically viable process of depleted uranium hexafluoride conversion; vitrifying systems based on metal fluorides possessing valuable functional optical properties; mechanochemical processes and phenomena in chemistry of inorganic fluorides [ru

Photoperiod and acute energy deficits interact on components of the thyroid hormone system in hypothalamic tanycytes of the Siberian hamster

NARCIS (Netherlands)

Herwig, Annika; Wilson, Dana; Logie, Tracy J.; Boelen, Anita; Morgan, Peter J.; Mercer, Julian G.; Barrett, Perry

2009-01-01

In the Siberian hamster, seasonal weight loss occurs gradually over many weeks during autumn and winter. This is driven by a regulatory mechanism that is able to integrate duration of exposure to short days (SDs) with the size of body energy reserves. After food restriction in SDs, followed by ad

Fermentation of Arabinoxylan-Oligosaccharides, Oligofructose and their Monomeric Sugars by Hindgut Bacteria from Siberian Sturgeon and African Catfish in Batch Culture in vitro

NARCIS (Netherlands)

Geraylou, Z.; Rurangwa, E.; Wiele, van der T.; Courtin, C.M.; Delcour, J.A.; Buyse, J.; Ollevier, F.

2014-01-01

The in vitro fermentation of two Non-Digestible Oligosaccharide (NDO) preparations, Arabinoxylan- Oligosaccharides (AXOS) and Oligofructose (OF), and their respective monomeric sugars, xylose and fructose, were investigated by hindgut microbiota of two major aquaculture fish species, Siberian

Photoperiod-Induced Increases in Bone Mineral Apposition Rate in Siberian Hamsters and the Involvement of Seasonal Leptin Changes

OpenAIRE

Marie Kokolski; Francis J. Ebling; James R. Henstock; Susan I. Anderson

2017-01-01

The adipokine leptin regulates energy balance, appetite, and reproductive maturation. Leptin also acts on bone growth and remodeling, but both osteogenic and anti-osteogenic effects have been reported depending on experimental conditions. Siberian hamsters (Phodopus sungorus) have natural variation in circulating leptin concentrations, where serum leptin is significantly decreased during the short day (SD)-induced winter state. In summer long day (LD) photoperiods, appetite and body adiposity...

Half-length model of a Siberian Snake magnet for RHIC

CERN Document Server

Okamura, M; Kawaguchi, T; Katayama, T; Jain, A; Muratore, J; Morgan, G; Willen, E

2000-01-01

For the Relativistic Heavy Ion Collider (RHIC) Spin Project, super-conducting helical dipole magnets are being constructed. These magnets will be used in 'Siberian Snakes' and 'Spin Rotators', which manipulate spin direction of proton beams in RHIC. The dipole field in these magnets rotates 360 deg. and is required to reach a magnetic field strength of more than 4.0 T. The bore radius of the coils and the magnetic length of the magnets are 50 and 2400 mm, respectively. To ascertain the performance of these magnets, which are built using a new 'coil in a slot' technique, a half-length model has been fabricated and tested. The quench performance, field uniformity and rotation angle have been investigated. The measured values in the model magnet agreed well with field calculations. These results demonstrate the adequacy of the fabrication method adopted in the model magnet. (authors)

Late Cenozoic faulting and the stress state in the south-eastern segment of the Siberian platform

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V. A. Sankov

2017-01-01

Full Text Available We have studied the structural geology and geomorphology of the fault zones in the junction area of the Angara-Lena uplift and the Predbaikalsky trough. We have analyzed faults and folds and reconstructed paleostresses for this junction area named the Irkutsk amphitheatre. Our study shows that syn-fold (Middle Paleozoic faults include thrusts, reverse faults and strike-slip faults with reverse components, that occurred due to compression from the neighbouring folded region. Recently, contrary to compression, faulting took place under the conditions of extension of the sedimentary cover: most of these recent faults have been classified as normal faults. In the Late Cenozoic, the platform cover was subjected to brittle and partly plicative deformation due to the NW–SE-trending extension that is most clearly observed in the adjacent Baikal rift. Thus, the divergent boundary between the Siberian block of the North Eurasian plate and the Transbaikalia block of the Amur plate is a zone of dynamic influence, which occupies the area considerably exceeding the mountainous region on the Siberian platform. Important factors of faulting are differentiated vertical movements of the blocks comprising the platform. Such vertical movements might have been related to displacements of brine volumes. In the Late Cenozoic basins, movements along separate faults took place in the Late Pleistocene – Holocene.

Spin motion at and near orbital resonance in storage rings with Siberian snakes I. At orbital resonance

International Nuclear Information System (INIS)

Barber, D.P.; Vogt, M.

2006-12-01

Here, and in a sequel, we invoke the invariant spin field to provide an in-depth study of spin motion at and near low order orbital resonances in a simple model for the effects of vertical betatron motion in a storage ring with Siberian Snakes. This leads to a clear understanding, within the model, of the behaviour of the beam polarization at and near so-called snake resonances in proton storage rings. (orig.)

Network analysis reveals distinct clinical syndromes underlying acute mountain sickness.

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David P Hall

Full Text Available Acute mountain sickness (AMS is a common problem among visitors at high altitude, and may progress to life-threatening pulmonary and cerebral oedema in a minority of cases. International consensus defines AMS as a constellation of subjective, non-specific symptoms. Specifically, headache, sleep disturbance, fatigue and dizziness are given equal diagnostic weighting. Different pathophysiological mechanisms are now thought to underlie headache and sleep disturbance during acute exposure to high altitude. Hence, these symptoms may not belong together as a single syndrome. Using a novel visual analogue scale (VAS, we sought to undertake a systematic exploration of the symptomatology of AMS using an unbiased, data-driven approach originally designed for analysis of gene expression. Symptom scores were collected from 292 subjects during 1110 subject-days at altitudes between 3650 m and 5200 m on Apex expeditions to Bolivia and Kilimanjaro. Three distinct patterns of symptoms were consistently identified. Although fatigue is a ubiquitous finding, sleep disturbance and headache are each commonly reported without the other. The commonest pattern of symptoms was sleep disturbance and fatigue, with little or no headache. In subjects reporting severe headache, 40% did not report sleep disturbance. Sleep disturbance correlates poorly with other symptoms of AMS (Mean Spearman correlation 0.25. These results challenge the accepted paradigm that AMS is a single disease process and describe at least two distinct syndromes following acute ascent to high altitude. This approach to analysing symptom patterns has potential utility in other clinical syndromes.

Correlation of neural activity with behavioral kinematics reveals distinct sensory encoding and evidence accumulation processes during active tactile sensing.

Science.gov (United States)

Delis, Ioannis; Dmochowski, Jacek P; Sajda, Paul; Wang, Qi

2018-03-23

Many real-world decisions rely on active sensing, a dynamic process for directing our sensors (e.g. eyes or fingers) across a stimulus to maximize information gain. Though ecologically pervasive, limited work has focused on identifying neural correlates of the active sensing process. In tactile perception, we often make decisions about an object/surface by actively exploring its shape/texture. Here we investigate the neural correlates of active tactile decision-making by simultaneously measuring electroencephalography (EEG) and finger kinematics while subjects interrogated a haptic surface to make perceptual judgments. Since sensorimotor behavior underlies decision formation in active sensing tasks, we hypothesized that the neural correlates of decision-related processes would be detectable by relating active sensing to neural activity. Novel brain-behavior correlation analysis revealed that three distinct EEG components, localizing to right-lateralized occipital cortex (LOC), middle frontal gyrus (MFG), and supplementary motor area (SMA), respectively, were coupled with active sensing as their activity significantly correlated with finger kinematics. To probe the functional role of these components, we fit their single-trial-couplings to decision-making performance using a hierarchical-drift-diffusion-model (HDDM), revealing that the LOC modulated the encoding of the tactile stimulus whereas the MFG predicted the rate of information integration towards a choice. Interestingly, the MFG disappeared from components uncovered from control subjects performing active sensing but not required to make perceptual decisions. By uncovering the neural correlates of distinct stimulus encoding and evidence accumulation processes, this study delineated, for the first time, the functional role of cortical areas in active tactile decision-making. Copyright © 2018 Elsevier Inc. All rights reserved.

Morbillivirus infection in a wild siberian tiger in the Russian Far East.

Science.gov (United States)

Quigley, Kathy S; Evermann, James F; Leathers, Charles W; Armstrong, Douglas L; Goodrich, John; Duncan, Neil M; Miquelle, Dale G

2010-10-01

We report the first documented case of morbillivirus infection in a wild, free-ranging Siberian tiger (Panthera tigris altaica). The tigress entered a small village in the Russian Far East in an ambulatory but stuporous state with no apparent recognition or fear of humans. Her condition progressed rapidly with neurological signs, anorexia, and ultimately death. Histologic lesions included vacuolated to malacic white matter in the brain stem, cerebellum, and thalamus, with associated lymphocytic meningoencephalitis. Large, intranuclear, eosinophilic inclusions were within regional astrocytes, and the brain lesions were immunohistochemically positive when stained for canine distemper viral antigen. Hematologic and blood chemistry results were consistent with overwhelming systemic infection and starvation. The animal also was antibody-positive for canine distemper virus, feline panleukopenia, and feline coronavirus.

Hypothalamic ventricular ependymal thyroid hormone deiodinases are an important element of circannual timing in the Siberian hamster (Phodopus sungorus.

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Annika Herwig

Full Text Available Exposure to short days (SD induces profound changes in the physiology and behaviour of Siberian hamsters, including gonadal regression and up to 30% loss in body weight. In a continuous SD environment after approximately 20 weeks, Siberian hamsters spontaneously revert to a long day (LD phenotype, a phenomenon referred to as the photorefractory response. Previously we have identified a number of genes that are regulated by short photoperiod in the neuropil and ventricular ependymal (VE cells of the hypothalamus, although their importance and contribution to photoperiod induced physiology is unclear. In this refractory model we hypothesised that the return to LD physiology involves reversal of SD expression levels of key hypothalamic genes to their LD values and thereby implicate genes required for LD physiology. Male Siberian hamsters were kept in either LD or SD for up to 39 weeks during which time SD hamster body weight decreased before increasing, after more than 20 weeks, back to LD values. Brain tissue was collected between 14 and 39 weeks for in situ hybridization to determine hypothalamic gene expression. In VE cells lining the third ventricle, expression of nestin, vimentin, Crbp1 and Gpr50 were down-regulated at 18 weeks in SD photoperiod, but expression was not restored to the LD level in photorefractory hamsters. Dio2, Mct8 and Tsh-r expression were altered by SD photoperiod and were fully restored, or even exceeded values found in LD hamsters in the refractory state. In hypothalamic nuclei, expression of Srif and Mc3r mRNAs was altered at 18 weeks in SD, but were similar to LD expression values in photorefractory hamsters. We conclude that in refractory hamsters not all VE cell functions are required to establish LD physiology. However, thyroid hormone signalling from ependymal cells and reversal of neuronal gene expression appear to be essential for the SD refractory response.

Effects of 60 Hz Magnetic Field Exposure on the Pineal and Hypothalamic-Pituitary-Gonadal Axis in the Siberian Hamster (Phodopus Sungorus)

Energy Technology Data Exchange (ETDEWEB)

Wilson, Bary W.(BATTELLE (PACIFIC NW LAB)); Matt, Kathleen S.(Arizona State University); Morris, James E.(BATTELLE (PACIFIC NW LAB)); Sasser, Lyle B.(BATTELLE (PACIFIC NW LAB)); Miller, Douglas L.(BATTELLE (PACIFIC NW LAB)); Anderson, Larry E.(BATTELLE (PACIFIC NW LAB))

1999-11-15

Experiments using the dwarf Siberian hamster Phodopus sungorus were carried out to determine possible neuroendocrine consequences of one-time and repeated exposures to 60 Hz magnetic fields (MF). Animals were maintained in either a short-light (SL, 8 h light:16 h dar) or long-light (LL, 16 h light:8h dark) photoperiod.

Modeling sub-sea permafrost in the East Siberian Arctic Shelf: the Dmitry Laptev Strait

International Nuclear Information System (INIS)

Nicolsky, D; Shakhova, N

2010-01-01

The present state of sub-sea permafrost modeling does not agree with certain observational data on the permafrost state within the East Siberian Arctic Shelf. This suggests a need to consider other mechanisms of permafrost destabilization after the recent ocean transgression. We propose development of open taliks wherever thaw lakes and river paleo-valleys were submerged shelf-wide as a possible mechanism for the degradation of sub-sea permafrost. To test the hypothesis we performed numerical modeling of permafrost dynamics in the Dmitry Laptev Strait area. We achieved sufficient agreement with the observed distribution of thawed and frozen layers to suggest that the proposed mechanism of permafrost destabilization is plausible.

THE SOUTHERN FRAGMENT OF THE SIBERIAN CRATON: “LANDSCAPE” HISTORY OVER TWO BILLION YEARS

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Arkady M. Stanevich

2010-01-01

Full Text Available In the state-of-the-art geology, concepts of evolution of interrelated geodynamic and biotic events throughout the history of the Earth have been developed (Fig. 1. Research results on sediments, bio-stratigraphy and geodynamics of the southern fragment of the Siberian craton (SSC, Fig. 2 provide for more or less reliable assessments of the status and evolution of ancient landscapes and biotas from the Lower Proterozoic to the Cenozoic.In the Lower Proterozoic, the geodynamic regime of the Urik-Iyskiy graben was similar to those of the westernpacific island-arc systems, which resulted in the orogen formation and established post-orogen granitoids of 1.86 bln years of age. At the beginning of the Early Riphean, volcano-sedimentary masses were accumulated in continental basins (Fig. 2, 3A. Collision orogenesis also resulted in the occurrence of the terrigeno-volcanogenic complex of the Akitkanskaya suite in the Western Pribaikalie and the transecting Irelskiy granitoids, aged 1.86 bln years, at the edge of the craton. Later on, most probably before the Riphean, peneplanation took place, and a shallow peripheral sea was formed with highly-mature sediments of the Purpolskaya suite. Different environments are reconstructed in the KodarUdokan zone. Sediments of the Udokanskaya suite, varying in thicknesses from 11 to 14 km, suggest a complicated evolution of sedimentation in the peripheral marine basin. Dozens of radiochronological datings of granitoids of the Chuiskiy and Kodarskiy complex which transect the Udokanskaya suite are within the range from 1.7 to 2.0 bln years. From the deposit composition and texture, it can be suggested that the middle, Chineiskaya sub-suite was formed under island-arc conditions; and glacial phenomena occurred in the late Udokan time.Further geological history of the SSC can be described only within the period after the Late Riphean sedimentations (see Fig. 3Б, В. The SSC evolution in the Neo-Proterozoic began with

NEW DATA ON AGE AND NATURE OF CARBONIZATION WITHIN SOUTHERN FLANK OF THE BAIKAL LEDGE OF THE SIBERIAN CRATON BASEMENT

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Yu. V. Danilova

2017-01-01

Full Text Available The Baikal ledge rock formations in the Siberian craton structure are included in the Akitkan mobile belt which is considered as the Late Paleoproterozoic independent island arc system moved up to the ancient basement during the terrains amalgamation 1.91–2.00 Ga ago (Fig. 1 [Rosen, 2003; Gladkochub et al., 2009; Didenko et al., 2013].

Laboratory-Cultured Strains of the Sea Anemone Exaiptasia Reveal Distinct Bacterial Communities

KAUST Repository

Herrera Sarrias, Marcela; Ziegler, Maren; Voolstra, Christian R.; Aranda, Manuel

2017-01-01

Exaiptasia is a laboratory sea anemone model system for stony corals. Two clonal strains are commonly used, referred to as H2 and CC7, that originate from two genetically distinct lineages and that differ in their Symbiodinium specificity. However, little is known about their other microbial associations. Here, we examined and compared the taxonomic composition of the bacterial assemblages of these two symbiotic Exaiptasia strains, both of which have been cultured in the laboratory long-term under identical conditions. We found distinct bacterial microbiota for each strain, indicating the presence of host-specific microbial consortia. Putative differences in the bacterial functional profiles (i.e., enrichment and depletion of various metabolic processes) based on taxonomic inference were also detected, further suggesting functional differences of the microbiomes associated with these lineages. Our study contributes to the current knowledge of the Exaiptasia holobiont by comparing the bacterial diversity of two commonly used strains as models for coral research.

Laboratory-Cultured Strains of the Sea Anemone Exaiptasia Reveal Distinct Bacterial Communities

KAUST Repository

Herrera Sarrias, Marcela

2017-05-02

Exaiptasia is a laboratory sea anemone model system for stony corals. Two clonal strains are commonly used, referred to as H2 and CC7, that originate from two genetically distinct lineages and that differ in their Symbiodinium specificity. However, little is known about their other microbial associations. Here, we examined and compared the taxonomic composition of the bacterial assemblages of these two symbiotic Exaiptasia strains, both of which have been cultured in the laboratory long-term under identical conditions. We found distinct bacterial microbiota for each strain, indicating the presence of host-specific microbial consortia. Putative differences in the bacterial functional profiles (i.e., enrichment and depletion of various metabolic processes) based on taxonomic inference were also detected, further suggesting functional differences of the microbiomes associated with these lineages. Our study contributes to the current knowledge of the Exaiptasia holobiont by comparing the bacterial diversity of two commonly used strains as models for coral research.

Effects of lecithin on growth and hematological indices in juveniles of Siberian sturgeon (Acipenser baeri Brandet 1869)

OpenAIRE

Najafipour Moghadam, E.; Falahatkar, B.; Kalbassi, M.R.

2011-01-01

This study was carried out to evaluate the effects of dietary lecithin on growth performance and hematological indices in juveniles of Siberian sturgeon (Acipenser baeri). Fish with initial average weight of 32.9±0.3 grams were fed five isoproteic and isolipidic formulated diets with different soybean lecithin levels including 0, 2.5, 5, 7.5 and 10% in triplicate groups for 8 weeks. Results showed that lecithin supplementation to 7.5% significantly increased some growth indices such as body w...

Smoke aerosol chemistry and aging of Siberian biomass burning emissions in a large aerosol chamber

Science.gov (United States)

Kalogridis, A.-C.; Popovicheva, O. B.; Engling, G.; Diapouli, E.; Kawamura, K.; Tachibana, E.; Ono, K.; Kozlov, V. S.; Eleftheriadis, K.

2018-07-01

Vegetation open fires constitute a significant source of particulate pollutants on a global scale and play an important role in both atmospheric chemistry and climate change. To better understand the emission and aging characteristics of smoke aerosols, we performed small-scale fire experiments using the Large Aerosol Chamber (LAC, 1800 m3) with a focus on biomass burning from Siberian boreal coniferous forests. A series of burn experiments were conducted with typical Siberian biomass (pine and debris), simulating separately different combustion conditions, namely, flaming, smoldering and mixed phase. Following smoke emission and dispersion in the combustion chamber, we investigated aging of aerosols under dark conditions. Here, we present experimental data on emission factors of total, elemental and organic carbon, as well as individual organic compounds, such as anhydrosugars, phenolic and dicarboxylic acids. We found that total carbon accounts for up to 80% of the fine mode (PM2.5) smoke aerosol. Higher PM2.5 emission factors were observed in the smoldering compared to flaming phase and in pine compared to debris smoldering phase. For low-temperature combustion, organic carbon (OC) contributed to more than 90% of total carbon, whereas elemental carbon (EC) dominated the aerosol composition in flaming burns with a 60-70% contribution to the total carbon mass. For all smoldering burns, levoglucosan (LG), a cellulose decomposition product, was the most abundant organic species (average LG/OC = 0.26 for pine smoldering), followed by its isomer mannosan or dehydroabietic acid (DA), an important constituent of conifer resin (DA/OC = 0.033). A levoglucosan-to-mannosan ratio of about 3 was observed, which is consistent with ratios reported for coniferous biomass and more generally softwood. The rates of aerosol removal for OC and individual organic compounds were investigated during aging in the chamber in terms of mass concentration loss rates over time under dark

Spin Transparency Mode in the NICA Collider with Solenoid Siberian Snakes for Proton and Deuteron Beam

Science.gov (United States)

Kovalenko, A. D.; Butenko, A. V.; Mikhaylov, V. A.; Kondratenko, M. A.; Kondratenko, A. M.; Filatov, Yu N.

2017-12-01

Two solenoid Siberian Snakes are required to obtain ion polarization in spin transparency mode of the NICA collider. The snake solenoids with a total field integral of 2×50 T·m are placed into the straight sections of the NICA collider. It allows one to control polarization of protons and deuterons up to 13.5 GeV/c and 4 GeV/c respectively. The snakes introduce a strong betatron oscillation coupling. The calculations of orbital parameters of proton and deuteron beams in the NICA collider with solenoid Snakes are presented.

A 4.7 tesla metre solenoid for a partial Siberian snake

Energy Technology Data Exchange (ETDEWEB)

Ratner, L; Leonhardt, W [Brookhaven National Lab., Upton, NY (United States); Otter, A; Ellstrom, L

1993-11-01

We describe the engineering design of a 4.7 T-m solenoid magnet which will be installed at the Brookhaven National Laboratory AGS for a partial Siberian Snake Experiment which is an interlaboratory collaboration. The magnet has an overall length of 2.5 m, a clear bore of 15 cm and operates at a peak field of 2 T. It is pulsed at 3 second intervals with a peak current of 9500 A dc driven from a 150 V power supply. The construction uses conventional hollow copper coils but the return flux yokes are made from 1/8 inch plates bolted together. On assembly the flux yokes and endplates are clamped tightly to the coil to prevent any movement during the current pulse. The fabrication experience and test data will be presented. The magnet was installed in the summer of 1993. (author). 3 refs., 1 tab., 1 fig.

A 4.7 tesla metre solenoid for a partial Siberian snake

International Nuclear Information System (INIS)

Ratner, L.; Leonhardt, W.; Otter, A.; Ellstrom, L.

1993-11-01

We describe the engineering design of a 4.7 T-m solenoid magnet which will be installed at the Brookhaven National Laboratory AGS for a partial Siberian Snake Experiment which is an interlaboratory collaboration. The magnet has an overall length of 2.5 m, a clear bore of 15 cm and operates at a peak field of 2 T. It is pulsed at 3 second intervals with a peak current of 9500 A dc driven from a 150 V power supply. The construction uses conventional hollow copper coils but the return flux yokes are made from 1/8 inch plates bolted together. On assembly the flux yokes and endplates are clamped tightly to the coil to prevent any movement during the current pulse. The fabrication experience and test data will be presented. The magnet was installed in the summer of 1993. (author). 3 refs., 1 tab., 1 fig

The cost to society of a methane outbreak from the East Siberian shelf (Invited)

Science.gov (United States)

Wadhams, P.

2013-12-01

Peter Wadhams (Dept. of Applied Mathematics and Theoretical Physics, University of Cambridge) Chris Hope (Judge Institute, University of Cambridge) Gail Whiteman (Erasmus University, Rotterdam) The East Siberian Sea has been emitting an increasing volume of methane in the form of plumes in each of the recent summers that observations have been carried out by a US-Russian joint group led by I Semiletov and N Shakhova. We believe that the emissions are due to melt of offshore permafrost due to warming of sea temperatures associated with the summer retreat of the sea ice. The field observers believe that out of a reservoir of some 720 Gt it is possible that 50 Gt could be emitted rapidly, within a few years. We calculated in a paper in "Nature" what the impact of such an emission (occurring over 10 years) would be, and found a total economic cost over a century (using the Stern Review PAGE09 model) of 60 trillion dollars, and an additional warming of the climate of some 0.6 C by 2040. These results have aroused controversy, and to assist in further discussions of their implications we have carried out further analyses as follows: 1. We have considered smaller and larger emissions, and have considered the overall costs for emissions occurring more slowly over a longer period, and/or beginning at a later date. We find that costs are approximately proportional to volume of emission, and are actually increased if the emission date is delayed until later in the century. 2. A further field operation is being carried out in summer 2013, and we will carry out, in time for the AGU meeting, a further model calculation based on the latest opinions of Semiletov and Shakhova regarding the way in which the East Siberian Sea emission field is developing.

Ancient DNA analysis of the oldest canid species from the Siberian Arctic and genetic contribution to the domestic dog.

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Esther J Lee

Full Text Available Modern Arctic Siberia provides a wealth of resources for archaeological, geological, and paleontological research to investigate the population dynamics of faunal communities from the Pleistocene, particularly as the faunal material coming from permafrost has proven suitable for genetic studies. In order to examine the history of the Canid species in the Siberian Arctic, we carried out genetic analysis of fourteen canid remains from various sites, including the well-documented Upper Paleolithic Yana RHS and Early Holocene Zhokhov Island sites. Estimated age of samples range from as recent as 1,700 years before present (YBP to at least 360,000 YBP for the remains of the extinct wolf, Canis cf. variabilis. In order to examine the genetic affinities of ancient Siberian canids species to the domestic dog and modern wolves, we obtained mitochondrial DNA control region sequences and compared them to published ancient and modern canid sequences. The older canid specimens illustrate affinities with pre-domestic dog/wolf lineages while others appear in the major phylogenetic clades of domestic dogs. Our results suggest a European origin of domestic dog may not be conclusive and illustrates an emerging complexity of genetic contribution of regional wolf breeds to the modern Canis gene pool.

Monosodium glutamate-induced arcuate nucleus damage affects both natural torpor and 2DG-induced torpor-like hypothermia in Siberian hamsters.

Science.gov (United States)

Pelz, Kimberly M; Routman, David; Driscoll, Joseph R; Kriegsfeld, Lance J; Dark, John

2008-01-01

Siberian hamsters (Phodopus sungorus) have the ability to express daily torpor and decrease their body temperature to approximately 15 degrees C, providing a significant savings in energy expenditure. Daily torpor in hamsters is cued by winterlike photoperiods and occurs coincident with the annual nadirs in body fat reserves and chronic leptin concentrations. To better understand the neural mechanisms underlying torpor, Siberian hamster pups were postnatally treated with saline or MSG to ablate arcuate nucleus neurons that likely possess leptin receptors. Body temperature was studied telemetrically in cold-acclimated (10 degrees C) male and female hamsters moved to a winterlike photoperiod (10:14-h light-dark cycle) (experiments 1 and 2) or that remained in a summerlike photoperiod (14:10-h light-dark cycle) (experiment 3). In experiment 1, even though other photoperiodic responses persisted, MSG-induced arcuate nucleus ablations prevented the photoperiod-dependent torpor observed in saline-treated Siberian hamsters. MSG-treated hamsters tended to possess greater fat reserves. To determine whether reductions in body fat would increase frequency of photoperiod-induced torpor after MSG treatment, hamsters underwent 2 wk of food restriction (70% of ad libitum) in experiment 2. Although food restriction did increase the frequency of torpor in both MSG- and saline-treated hamsters, it failed to normalize the proportion of MSG-treated hamsters undergoing photoperiod-dependent torpor. In experiment 3, postnatal MSG treatments reduced the proportion of hamsters entering 2DG-induced torpor-like hypothermia by approximately 50% compared with saline-treated hamsters (38 vs. 72%). In those MSG-treated hamsters that did become hypothermic, their minimum temperature during hypothermia was significantly greater than comparable saline-treated hamsters. We conclude that 1) arcuate nucleus mechanisms mediate photoperiod-induced torpor, 2) food-restriction-induced torpor may also be

Neurodegenerative disease mutations in TREM2 reveal a functional surface and distinct loss-of-function mechanisms

Energy Technology Data Exchange (ETDEWEB)

Kober, Daniel L.; Alexander-Brett, Jennifer M.; Karch, Celeste M.; Cruchaga, Carlos; Colonna, Marco; Holtzman, Michael J.; Brett, Thomas J. (WU-MED)

2016-12-20

Genetic variations in the myeloid immune receptor TREM2 are linked to several neurodegenerative diseases. To determine how TREM2 variants contribute to these diseases, we performed structural and functional studies of wild-type and variant proteins. Our 3.1 Å TREM2 crystal structure revealed that mutations found in Nasu-Hakola disease are buried whereas Alzheimer’s disease risk variants are found on the surface, suggesting that these mutations have distinct effects on TREM2 function. Biophysical and cellular methods indicate that Nasu-Hakola mutations impact protein stability and decrease folded TREM2 surface expression, whereas Alzheimer’s risk variants impact binding to a TREM2 ligand. Additionally, the Alzheimer’s risk variants appear to epitope map a functional surface on TREM2 that is unique within the larger TREM family. These findings provide a guide to structural and functional differences among genetic variants of TREM2, indicating that therapies targeting the TREM2 pathway should be tailored to these genetic and functional differences with patient-specific medicine approaches for neurodegenerative disorders.

Two possibilities for New Siberian Islands terrane tectonic history during the Early Paleozoic based on paleomagnetic data

Science.gov (United States)

Metelkin, Dmitry V.; Chernova, Anna I.; Vernikovsky, Valery A.; Matushkin, Nikolay Yu.

2017-04-01

The New Siberian Islands (NSI), located in the East Siberian Sea in the junction region of various structural elements, are a key target for deciphering the tectonic evolution of the Eastern Arctic. In recent years, we went on several expeditions and gathered an extensive geological material for this territory. Among other things, we could prove that the basement of the De Long and Anjou archipelagos structures is Precambrian and the overlying Paleozoic sections formed within the same terrane. The form of the boundaries of the NSI terrane are actively debated and are probably continued from the Lyakhovsky islands in the south-west to the southern parts of the submerged Mendeleev Ridge, for which there is increasing evidence of continental crust. Today there are several models that interpret the Paleozoic-Mesozoic tectonic history and structural affiliation of the NSI terrane. Some propose that the Paleozoic sedimentary section formed in a passive margin setting of the Siberian paleocontinent. Others compare its history with marginal basins of the Baltica and Laurentia continents or consider the NSI terrane as an element of the Chukotka-Alaska microplate. These models are mainly based on results of paleobiogeographical and lithological-facies analyses, including explanations of probable sources for detrital zircons. Our paleomagnetic research on sedimentary, volcanogenic-sedimentary and igneous rocks of the Anjou (Kotelny and Bel'kovsky islands) and De Long (Bennett, Jeannette and Henrietta islands) archipelagos let us calculate an apparent polar wander path for the early Paleozoic interval of geological history, which allows us to conclude that the NSI terrane could not have been a part of the continental plates listed above, but rather had active tectonic boundaries with them. Our paleomagnetic data indicate that the NSI terrane drifted slowly and steadily in the tropical and subtropical regions no higher than 40 degrees. However, the main uncertainty for the

Mechanical fasteners used in historical Siberian shipbuilding: perspectives for metallurgical analysis

Science.gov (United States)

Goncharov, A. E.; Mednikov, D. M.; Karelin, N. M.; Nasyrov, I. R.

2017-10-01

Recent discoveries of shipwrecked vessels in the northern reaches of the river Yenisei led to a number of questions concerning the history of shipbuilding in Siberia and the technical features of the first vessels of the industrial era to navigate the Northern Sea Route and the Yenisei. One of these questions addresses the features of mechanical fasteners used in the construction of the Siberian vessels. The answer to this question may provide information on how the first vessels, constructed in Siberia during the 1870’s, were able to sail the high seas of the Arctic Ocean and reach European ports. In this paper, we provide a description of iron mechanical fasteners obtained from one shipwrecked vessel and discuss on the perspectives of a metallurgical analysis This research has been funded by a grant of the Russian Fund of Humanities Research (Russian Fund of Fundamental Research) and the Krasnoyarsk Regional Science Fund under Grant number 16-11-24010.

Trace element distribution in peridotite xenoliths from Tok, SE Siberian craton: A record of pervasive, multi-stage metasomatism in shallow refractory mantle

Science.gov (United States)

Ionov, Dmitri A.; Chazot, Gilles; Chauvel, Catherine; Merlet, Claude; Bodinier, Jean-Louis

2006-03-01

Spinel peridotite xenoliths in alkali basalts at Tok, SE Siberian craton range from fertile lherzolites to harzburgites and wehrlites; olivine-rich (70-84%) rocks are dominant. REE patterns in the lherzolites range from nearly flat for fertile rocks (14-17% cpx) to LREE-enriched; the enrichments are positively correlated with modal olivine, consistent with high-permeability of olivine-rich rocks during melt percolation. Clinopyroxene in olivine-rich Tok peridotites typically has convex-upward trace element patterns (La/Nd PM 1); the LREE-enrichments are positively correlated with phosphorus abundances and are mainly hosted by accessory phosphates and P-rich cryptocrystalline materials. In addition to apatite, some Tok xenoliths contain whitlockite (an anhydrous, halogen-poor and Na-Mg-rich phosphate), which is common in meteorites and lunar rocks, but has not been reported from any terrestrial mantle samples. Some olivine-rich peridotites have generations of clinopyroxene with distinct abundances of Na, LREE, Sr and Zr. The mineralogical and trace element data indicate that the lithospheric mantle section represented by the xenoliths experienced a large-scale metasomatic event produced by upward migration of mafic silicate melts followed by percolation of low- T, alkali-rich melts and fluids. Chromatographic fractionation and fractional crystallisation of the melts close to the percolation front produced strong LREE-enrichments, which are most common in the uppermost mantle and are related to carbonate- and P 2O 5-rich derivatives of the initial melt. Reversal and gradual retreat of the percolation front during thermal relaxation to ambient geotherm ("retrograde" metasomatism) caused local migration and entrapment of small-volume residual fluids and precipitation of volatile-rich accessory minerals. A distinct metasomatic episode, which mainly produced "anhydrous" late-stage interstitial materials was concomitant with the alkali basaltic magmatism, which brought

Seasonal dynamics of structure and functional activity of ectomycorrhizal roots of the Siberian fir

Directory of Open Access Journals (Sweden)

T. A. Sizonenko

2017-12-01

Full Text Available The aim of our work was to study seasonal dynamics of the Siberian fir Abies sibirica Ledeb. ectomycorrhizal morpho-anatomical structure, respiration rate and fluorescence. The study was carried out in the bilberry-sphagnum spruce forest in the middle taiga of the Komi Republic, Russia. The morpho-anatomical structure and fluorescence parameters were studied by light and luminescence microscopy. Thin root respiration was studied in intact fine roots in the field using an infrared gas analyzer. 12 subtypes of fungal mantels were revealed in ectomycorrhizal fir roots; their amount and composition demonstrated seasonal dynamic changes. At the beginning vegetation stage, the diversity and proportion of pseudoparenchymatous and double covers were maximal. Plant component of ectomycorrhizae that includes cortical parenchyma and stele had high activity of fluorescence during the entire vegetation period. The dynamics of staining of fungal component (fungal mantel and Hartig net was more contrasting. The highest fluorescence intensity of cortical parenchyma was found in ectomycorrhizae with maximal fungal mantel thickness. High proportion of tannin cells in cortical parenchyma was related with low intensity of fungal mantel and Hartig net fluorescence. During vegetation season, maximal amount of intensively strained ectomycorrhizal elements occurred in July and unstrained – in June and August. Relation between fine roots respiration and an increase of brightly strained ectomycorrhizal structural elements in fir roots was not statistically significant. Root CO2-emission was lower in May and September in comparison with summer months. For respiration rate of fir fine roots we found its strong positive correlation with the litter temperature.

Sorting and degradation of permafrost-derived organic carbon during across-shelf transport in the Laptev and East Siberian shelves

Science.gov (United States)

Tesi, Tommaso; Semiletov, Igor; Dudarev, Oleg; Andersson, August; Gustafsson, Örjan

2015-04-01

The flux of permafrost-derived organic carbon to the vast Siberian marginal seas has been receiving growing attention because its magnitude is expected to considerably increase due to changes in both river discharge and coastal permafrost stability. To what extent this relocated terrigenous organic carbon (TerrOC) pool will affect climate and biogeochemistry is currently unknown but it will largely depend on its reactivity in the marine environment. This study seeks an improved mechanistic understanding of TerrOC cycling during across-shelf transport in the vast East Siberian Arctic Seas (ESAS). Surface sediments were collected in both river-dominated and coastal erosion-dominated regions as well as at increasing distances from the shore. The organic composition in different density, size and settling velocity fractions was characterized using bulk parameters (δ13C and Δ14C) and terrigenous biomarkers including CuO-derived reaction products (lignin phenols and cutin acids) and solvent extractable HMW lipids (n-alkanoic acids, n-alkanols and n-alkanes). Key insights were gained by understanding how different TerrOC pools, operationally defined at bulk and molecular level, are distributed among different density, size and settling velocity fractions and how they change over the margin in relative concentration and composition. Our results show that the partitioning and mobility of TerrOC pools is intimately linked to density and size of particles. A large fraction of TerrOC entering the margin is associated with large, lignin-rich plant fragments which are hydrodynamically retained in coastal sediments. The across-shelf transport of TerrOC occurs primarily in the form of mineral-bound OC through the preferential mobilization of fine lithogenic particles rich in HMW lipids. Despite the mineral-association, noticeable decrease of TerrOC was observed at molecular and bulk level which indicates extensive degradation during transport across the margin. Altogether our

Water track distribution and effects on carbon dioxide flux in an eastern Siberian upland tundra landscape

International Nuclear Information System (INIS)

Curasi, Salvatore R; Loranty, Michael M; Natali, Susan M

2016-01-01

Shrub expansion in tundra ecosystems may act as a positive feedback to climate warming, the strength of which depends on its spatial extent. Recent studies have shown that shrub expansion is more likely to occur in areas with high soil moisture and nutrient availability, conditions typically found in sub-surface water channels known as water tracks. Water tracks are 5–15 m wide channels of subsurface water drainage in permafrost landscapes and are characterized by deeper seasonal thaw depth, warmer soil temperatures, and higher soil moisture and nutrient content relative to adjacent tundra. Consequently, enhanced vegetation productivity, and dominance by tall deciduous shrubs, are typical in water tracks. Quantifying the distribution of water tracks may inform investigations of the extent of shrub expansion and associated impacts on tundra ecosystem carbon cycling. Here, we quantify the distribution of water tracks and their contribution to growing season CO 2 dynamics for a Siberian tundra landscape using satellite observations, meteorological data, and field measurements. We find that water tracks occupy 7.4% of the 448 km 2 study area, and account for a slightly larger proportion of growing season carbon uptake relative to surrounding tundra. For areas inside water tracks dominated by shrubs, field observations revealed higher shrub biomass and higher ecosystem respiration and gross primary productivity relative to adjacent upland tundra. Conversely, a comparison of graminoid-dominated areas in water tracks and inter-track tundra revealed that water track locations dominated by graminoids had lower shrub biomass yet increased net uptake of CO 2 . Our results show water tracks are an important component of this landscape. Their distribution will influence ecosystem structural and functional responses to climate, and is therefore of importance for modeling. (letter)

Genomic analyses of breast cancer progression reveal distinct routes of metastasis emergence

DEFF Research Database (Denmark)

Krøigård, Anne Bruun; Larsen, Martin Jakob; Brasch-Andersen, Charlotte

2017-01-01

receptor (ER)-positive breast cancer. Our data provide support for both linear and parallel progression towards metastasis. We report for the first time evidence of metastasis-to-metastasis seeding in breast cancer. Our results point to three distinct routes of metastasis emergence. This may have profound...... clinical implications and provides substantial novel molecular insights into the timing and mutational evolution of breast cancer metastasis....

The Brain–to–Pancreatic Islet Neuronal Map Reveals Differential Glucose Regulation From Distinct Hypothalamic Regions

Science.gov (United States)

Rosario, Wilfredo; Singh, Inderroop; Wautlet, Arnaud; Patterson, Christa; Flak, Jonathan; Becker, Thomas C.; Ali, Almas; Tamarina, Natalia; Philipson, Louis H.; Enquist, Lynn W.; Myers, Martin G.

2016-01-01

The brain influences glucose homeostasis, partly by supplemental control over insulin and glucagon secretion. Without this central regulation, diabetes and its complications can ensue. Yet, the neuronal network linking to pancreatic islets has never been fully mapped. Here, we refine this map using pseudorabies virus (PRV) retrograde tracing, indicating that the pancreatic islets are innervated by efferent circuits that emanate from the hypothalamus. We found that the hypothalamic arcuate nucleus (ARC), ventromedial nucleus (VMN), and lateral hypothalamic area (LHA) significantly overlap PRV and the physiological glucose-sensing enzyme glucokinase. Then, experimentally lowering glucose sensing, specifically in the ARC, resulted in glucose intolerance due to deficient insulin secretion and no significant effect in the VMN, but in the LHA it resulted in a lowering of the glucose threshold that improved glucose tolerance and/or improved insulin sensitivity, with an exaggerated counter-regulatory response for glucagon secretion. No significant effect on insulin sensitivity or metabolic homeostasis was noted. Thus, these data reveal novel direct neuronal effects on pancreatic islets and also render a functional validation of the brain-to-islet neuronal map. They also demonstrate that distinct regions of the hypothalamus differentially control insulin and glucagon secretion, potentially in partnership to help maintain glucose homeostasis and guard against hypoglycemia. PMID:27207534

The Brain-to-Pancreatic Islet Neuronal Map Reveals Differential Glucose Regulation From Distinct Hypothalamic Regions.

Science.gov (United States)

Rosario, Wilfredo; Singh, Inderroop; Wautlet, Arnaud; Patterson, Christa; Flak, Jonathan; Becker, Thomas C; Ali, Almas; Tamarina, Natalia; Philipson, Louis H; Enquist, Lynn W; Myers, Martin G; Rhodes, Christopher J

2016-09-01

The brain influences glucose homeostasis, partly by supplemental control over insulin and glucagon secretion. Without this central regulation, diabetes and its complications can ensue. Yet, the neuronal network linking to pancreatic islets has never been fully mapped. Here, we refine this map using pseudorabies virus (PRV) retrograde tracing, indicating that the pancreatic islets are innervated by efferent circuits that emanate from the hypothalamus. We found that the hypothalamic arcuate nucleus (ARC), ventromedial nucleus (VMN), and lateral hypothalamic area (LHA) significantly overlap PRV and the physiological glucose-sensing enzyme glucokinase. Then, experimentally lowering glucose sensing, specifically in the ARC, resulted in glucose intolerance due to deficient insulin secretion and no significant effect in the VMN, but in the LHA it resulted in a lowering of the glucose threshold that improved glucose tolerance and/or improved insulin sensitivity, with an exaggerated counter-regulatory response for glucagon secretion. No significant effect on insulin sensitivity or metabolic homeostasis was noted. Thus, these data reveal novel direct neuronal effects on pancreatic islets and also render a functional validation of the brain-to-islet neuronal map. They also demonstrate that distinct regions of the hypothalamus differentially control insulin and glucagon secretion, potentially in partnership to help maintain glucose homeostasis and guard against hypoglycemia. © 2016 by the American Diabetes Association.

The joint Russia-US-Sweden studies in the East-Siberian Arctic Shelf (ESAS) during the last decade (1999-2009): an overview

Science.gov (United States)

Sergienko, Valentin; Shakhova, Natalia; Dudarev, Oleg; Gustafsson, Orjan; Anderson, Leif; Semiletov, Igor

2010-05-01

The Arctic Ocean is surrounded by permafrost, which is being degraded at an increasing rate under conditions of warming which are most pronounced in Siberia and Alaska . A major constraint on our ability to understand linkages between the Arctic Ocean and the global climate system is the scarcity of observational data in the Siberian Arctic marginal seas where major fresh water input and terrestrial CNP fluxes exist. The East-Siberian Sea has never been investigated by modern techniques despite the progress that has been made in new technologies useful for measuring ocean characteristics of interest. In this multi-year international project which joins scientists from 3 nations (Russia-USA-Sweden), and in cooperation with scientists from other countries (UK, Netherlands) we focus on he ESAS which is poorly explored areas located west from the U.S.-Russia boundary. In this report we overview the main field activities and present some results obtained during the last decade (1999-2009). Siberian freshwater discharge to the Arctic Ocean is expected to increase with increasing temperatures, potentially resulting in greater river export of old terrigenous organic carbon to the ocean. We suggest that rivers integrate variability in the components of the hydrometeorological regime, including soil condition, permafrost seasonal thaw, and thermokarst development, all the variables that determine atmospheric and ground water supply for the rivers and chemical weathering in their watershed.. It has been found that 1) carbon dioxide and methane fluxes are significant (and non-counted) components of the carbon cycling in the Arctic Ocean; 2) transport of eroded terrestrial material plays a major role in the accumulation of carbon in the ESAS (Dudarev et al., Gustafsson et al., Vonk et al., Sanchez-Garcia et al., Charkin et al., Semiletov et al., this session) ; 3) the seabed is a major CH4 source over the ESAS (N.Shakhova et al., this session); 3) eroded carbon is biodegradable

Direct seeding of Sitka spruce (Picea sitchensis (Bong.) Carr.), lodgepole pine (Pinus Contorta Dougl. v. contorta) and Siberian larch (Larix sibirica Ledeb.), on scarified seed spots in southern Iceland, using various methods

Energy Technology Data Exchange (ETDEWEB)

Petursson, J.G. [The Icelandic Forestry Association, Reykjavik (Iceland)

1995-12-31

Field experiments were established to study the potential of direct seeding of Sitka spruce, lodgepole pine and Siberian larch in southern Iceland. Five seeding methods were tried; control, covered with gravel, covered with pumice, pyramidal indentations and plastic cone. Spring- and autumn planting of one year old planting stock was also carried out for comparison. The results after two growing seasons are presented. Overall germination was 11,3% the first summer and 19,0% the second summer. Lodgepole pine had significantly highest germination or 41,3%. Sitka spruce, having 26.8% germination, and Siberian larch having 22,6% germination did not differ significantly from each other. The seeding method plastic cone gave the highest germination for all the species used, or 50,3%. Seedling mortality was high after the first winter, except in the plastic cone where more than 80% of the seedlings survived. The number of spots having at least one living seedling after two growth seasons was high in all seeding methods for lodgepole pine or 76,3-95,0% and for Sitka spruce or 71,3-86,3%. This result was however mainly explained by seedlings that germinated in the current growing season. For Siberian larch the number of the spots having one or more living seedlings was low for other seeding methods than plastic cone which gave 68,8%. No difference was found in seedling height between the methods control, covered with gravel, covered with pumice and pyramidal indentations. Survival of planted seedlings differed between planting times. Spring planting (28/6) was found more advantageous for Sitka spruce and lodgepole pine, but autumn planting (3/10) for Siberian larch. When the seeding methods were compared with planting after two growth seasons, it can be concluded that the method plastic cone was the only method tried which was compatible with planting. 45 refs, 9 figs, 14 tabs

Complete sequence analysis reveals two distinct poleroviruses infecting cucurbits in China.

Science.gov (United States)

Xiang, Hai-ying; Shang, Qiao-xia; Han, Cheng-gui; Li, Da-wei; Yu, Jia-lin

2008-01-01

The complete RNA genomes of a Chinese isolate of cucurbit aphid-borne yellows virus (CABYV-CHN) and a new polerovirus tentatively referred to as melon aphid-borne yellows virus (MABYV) were determined. The entire genome of CABYV-CHN shared 89.0% nucleotide sequence identity with the French CABYV isolate. In contrast, nucleotide sequence identities between MABYV and CABYV and other poleroviruses were in the range of 50.7-74.2%, with amino acid sequence identities ranging from 24.8 to 82.9% for individual gene products. We propose that CABYV-CHN is a strain of CABYV and that MABYV is a member of a tentative distinct species within the genus Polerovirus.

Simultaneous Occurrence of Pancreatic Adenocarcinoma and Brunner's Gland Adenoma in a Siberian Tiger (Panthera tigris altaica).

Science.gov (United States)

Gombač, M; Dolenšek, T; Jaušovec, D; Kvapil, P; Švara, T; Pogačnik, M

2015-11-01

We describe a case of pancreatic adenocarcinoma and Brunner's gland adenoma in an 18-year-old male Siberian tiger (Panthera tigris altaica) from the Ljubljana Zoo. The tiger was humanely destroyed due to weakness and progressive weight loss. Necropsy examination revealed a large, grey, predominantly necrotic mass replacing the major part of the pancreatic body. Microscopically, the mass was unencapsulated, poorly demarcated, highly cellular and composed of highly pleomorphic, cuboidal to tall columnar cells with basal, round or oval, moderately anisokaryotic nuclei with prominent nucleoli and moderate to large amounts of eosinophilic cytoplasm. The tumour was diagnosed as pancreatic tubular adenocarcinoma with infiltration into the duodenum and mesentery. There were tumour emboli in mesenteric blood vessels and hepatic metastases. The non-affected part of the pancreas exhibited severe chronic pancreatitis. In addition, one firm white neoplastic nodule was observed in the duodenal wall. The nodule was set in the tunica muscularis and was unencapsulated, well demarcated and highly cellular, and consisted of a closely packed layer of normal Brunner's glands and a centrally positioned group of irregularly branched tubules with small amounts of debris in the lumen. The neoplastic nodule was diagnosed as Brunner's gland adenoma. The present case is, to the best of our knowledge, the first report of concurrent pancreatic adenocarcinoma and Brunner's gland adenoma, most probably induced by chronic pancreatitis, either in man or animals. Copyright © 2015 Elsevier Ltd. All rights reserved.

Analysis of Odorants in Marking Fluid of Siberian Tiger (Panthera tigris altaica Using Simultaneous Sensory and Chemical Analysis with Headspace Solid-Phase Microextraction and Multidimensional Gas Chromatography-Mass Spectrometry-Olfactometry

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Simone B. Soso

2016-06-01

Full Text Available Scent-marking is the most effective method of communication in the presence or absence of a signaler. These complex mixtures result in a multifaceted interaction triggered by the sense of smell. The objective was to identify volatile organic compound (VOC composition and odors emitted by total marking fluid (MF associated with Siberian tigers (Panthera tigris altaica. Siberian tiger, an endangered species, was chosen because its MF had never been analyzed. Solid phase microextraction (SPME for headspace volatile collection combined with multidimensional gas chromatography-mass spectrometry-olfactometry for simultaneous chemical and sensory analyses were used. Thirty-two VOCs emitted from MF were identified. 2-acetyl-1-pyrroline, the sole previously identified compound responsible for the “characteristic” odor of P. tigris MF, was identified along with two additional compounds confirmed with standards (urea, furfural and four tentatively identified compounds (3-methylbutanamine, (R-3-methylcyclopentanone, propanedioic acid, and 3-hydroxybutanal as being responsible for the characteristic aroma of Siberian tiger MF. Simultaneous chemical and sensory analyses improved characterization of scent-markings and identified compounds not previously reported in MF of other tiger species. This research will assist animal ecologists, behaviorists, and zookeepers in understanding how scents from specific MF compounds impact tiger and wildlife communication and improve management practices related to animal behavior. Simultaneous chemical and sensory analyses is applicable to unlocking scent-marking information for other species.

Analysis of Odorants in Marking Fluid of Siberian Tiger (Panthera tigris altaica) Using Simultaneous Sensory and Chemical Analysis with Headspace Solid-Phase Microextraction and Multidimensional Gas Chromatography-Mass Spectrometry-Olfactometry.

Science.gov (United States)

Soso, Simone B; Koziel, Jacek A

2016-06-25

Scent-marking is the most effective method of communication in the presence or absence of a signaler. These complex mixtures result in a multifaceted interaction triggered by the sense of smell. The objective was to identify volatile organic compound (VOC) composition and odors emitted by total marking fluid (MF) associated with Siberian tigers (Panthera tigris altaica). Siberian tiger, an endangered species, was chosen because its MF had never been analyzed. Solid phase microextraction (SPME) for headspace volatile collection combined with multidimensional gas chromatography-mass spectrometry-olfactometry for simultaneous chemical and sensory analyses were used. Thirty-two VOCs emitted from MF were identified. 2-acetyl-1-pyrroline, the sole previously identified compound responsible for the "characteristic" odor of P. tigris MF, was identified along with two additional compounds confirmed with standards (urea, furfural) and four tentatively identified compounds (3-methylbutanamine, (R)-3-methylcyclopentanone, propanedioic acid, and 3-hydroxybutanal) as being responsible for the characteristic aroma of Siberian tiger MF. Simultaneous chemical and sensory analyses improved characterization of scent-markings and identified compounds not previously reported in MF of other tiger species. This research will assist animal ecologists, behaviorists, and zookeepers in understanding how scents from specific MF compounds impact tiger and wildlife communication and improve management practices related to animal behavior. Simultaneous chemical and sensory analyses is applicable to unlocking scent-marking information for other species.

Complete Mitochondrial Genomes of the Cherskii’s Sculpin and Siberian Taimen Reveal GenBank Entry Errors: Incorrect Species Identification and Recombinant Mitochondrial Genome

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Evgeniy S Balakirev

2017-08-01

Full Text Available The complete mitochondrial (mt genome is sequenced in 2 individuals of the Cherskii’s sculpin Cottus czerskii . A surprisingly high level of sequence divergence (10.3% has been detected between the 2 genomes of C czerskii studied here and the GenBank mt genome of C czerskii (KJ956027. At the same time, a surprisingly low level of divergence (1.4% has been detected between the GenBank C czerskii (KJ956027 and the Amur sculpin Cottus szanaga (KX762049, KX762050. We argue that the observed discrepancies are due to incorrect taxonomic identification so that the GenBank accession number KJ956027 represents actually the mt genome of C szanaga erroneously identified as C czerskii . Our results are of consequence concerning the GenBank database quality, highlighting the potential negative consequences of entry errors, which once they are introduced tend to be propagated among databases and subsequent publications. We illustrate the premise with the data on recombinant mt genome of the Siberian taimen Hucho taimen (NCBI Reference Sequence Database NC_016426.1; GenBank accession number HQ897271.1, bearing 2 introgressed fragments (≈0.9 kb [kilobase] from 2 lenok subspecies, Brachymystax lenok and Brachymystax lenok tsinlingensis , submitted to GenBank on June 12, 2011. Since the time of submission, the H taimen recombinant mt genome leading to incorrect phylogenetic inferences was propagated in multiple subsequent publications despite the fact that nonrecombinant H taimen genomes were also available (submitted to GenBank on August 2, 2014; KJ711549, KJ711550. Other examples of recombinant sequences persisting in GenBank are also considered. A GenBank Entry Error Depositary is urgently needed to monitor and avoid a progressive accumulation of wrong biological information.

VICTIMIZATION BARRIERS OF SMALL BUSINESS (ON THE EXAMPLE OF SIBERIAN FEDERAL DISTRICT

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Альберт Станиславович Милевич

2013-08-01

Full Text Available The actuality of this article confirms the mainest idea: determination of basic factors of victimization businessmen in small business in Siberian District(SD. This article consider field and main explorations in victimization of entrepreneurs of small business at 5 regions SD. The representativeness of exploration shows sociological choice. In field study took part 100 respondents, all in all 487 reprenteurs.The primary research method had chosen in the way of survey. By the results were identified over 14 organizations and instances which were given bribes over 10 times. Moreover the exploration showed causes why businessmen forced to solve problems by not legal way.It is necessary to eliminate this victimization factors and program of victimological prophylaxis for successful development of small business of SD and it’s regions concretely. Decision of this problem would be showed in the next article.DOI: http://dx.doi.org/10.12731/2218-7405-2013-6-19

Dissolved organic matter and its optical characteristics in the Laptev and East Siberian seas: spatial distribution and interannual variability (2003-2011)

Science.gov (United States)

Pugach, Svetlana P.; Pipko, Irina I.; Shakhova, Natalia E.; Shirshin, Evgeny A.; Perminova, Irina V.; Gustafsson, Örjan; Bondur, Valery G.; Ruban, Alexey S.; Semiletov, Igor P.

2018-02-01

The East Siberian Arctic Shelf (ESAS) is the broadest and shallowest continental shelf in the world. It is characterized by both the highest rate of coastal erosion in the world and a large riverine input of terrigenous dissolved organic matter (DOM). DOM plays a significant role in marine aquatic ecosystems. The chromophoric fraction of DOM (CDOM) directly affects the quantity and spectral quality of available light, thereby impacting both primary production and ultraviolet (UV) exposure in aquatic ecosystems. A multiyear study of CDOM absorption, fluorescence, and spectral characteristics was carried out over the vast ESAS in the summer-fall seasons. The paper describes observations accomplished at 286 stations and 1766 in situ high-resolution optical measurements distributed along the nearshore zone. Spatial and interannual CDOM dynamics over the ESAS were investigated, and driving factors were identified. It was shown that the atmospheric circulation regime is the dominant factor controlling CDOM distribution on the ESAS. This paper explores the possibility of using CDOM and its spectral parameters to identify the different biogeochemical regimes in the surveyed area. The analysis of CDOM spectral characteristics showed that the major part of the Laptev and East Siberian seas shelf is influenced by terrigenous DOM carried in riverine discharge. Western and eastern provinces of the ESAS with distinctly different DOM optical properties were also identified; a transition between the two provinces at around 165-170° E, also consistent with hydrological and hydrochemical data, is shown. In the western ESAS, a region of substantial river impact, the content of aromatic carbon within DOM remains almost constant. In the eastern ESAS, a gradual decrease in aromaticity percentage was observed, indicating contribution of Pacific-origin waters, where allochthonous DOM with predominantly aliphatic character and much smaller absorption capacity predominates. In addition, we

Independence of circadian entrainment state and responses to melatonin in male Siberian hamsters

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Gorman Michael R

2003-10-01

Full Text Available Abstract Background Seasonal fluctuations in physiology and behavior depend on the duration of nocturnal melatonin secretion programmed by the circadian system. A melatonin signal of a given duration, however, can elicit different responses depending on whether an animal was previously exposed to longer or shorter photoperiod signals (i.e., its photoperiodic history. This report examined in male Siberian hamsters which of two aspects of photoperiod history – prior melatonin exposure or entrainment state of the circadian system – is critical for generating contingent responses to a common photoperiodic signal. Results In Experiment #1, daily melatonin infusions of 5 or 10 h duration stimulated or inhibited gonadal growth, respectively, but had no effect on entrainment of the locomotor activity rhythm to long or short daylengths, thereby demonstrating that melatonin history and entrainment status could be experimentally dissociated. These manipulations were repeated in Experiment #2, and animals were subsequently exposed to a 12 week regimen of naturalistic melatonin signals shown in previous experiments to reveal photoperiodic history effects. Gonadal responses differed as a function of prior melatonin exposure but were unaffected by the circadian entrainment state. Experiment #3 demonstrated that a new photoperiodic history could be imparted during four weeks of exposure to long photoperiods. This effect, moreover, was blocked in animals treated concurrently with constant release melatonin capsules that obscured the endogenous melatonin signal: Following removal of the implants, the gonadal response depended not on the immediately antecedent circadian entrainment state, but on the more remote photoperiodic conditions prior to the melatonin implant. Conclusions The interpretation of photoperiodic signals as a function of prior conditions depends specifically on the history of melatonin exposure. The photoperiodic regulation of circadian

Widespread release of old carbon across the Siberian Arctic echoed by its large rivers

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Ö. Gustafsson

2011-06-01

Full Text Available Over decadal-centennial timescales, only a few mechanisms in the carbon-climate system could cause a massive net redistribution of carbon from land and ocean systems to the atmosphere in response to climate warming. The largest such climate-vulnerable carbon pool is the old organic carbon (OC stored in Arctic permafrost (perennially frozen soils. Climate warming, both predicted and now observed to be the strongest globally in the Eurasian Arctic and Alaska, causes thaw-release of old permafrost carbon from local tundra sites. However, a central challenge for the assessment of the general vulnerability of this old OC pool is to deduce any signal integrating its release over larger scales. Here we examine radiocarbon measurements of molecular soil markers exported by the five Great Russian-Arctic Rivers (Ob, Yenisey, Lena, Indigirka and Kolyma, employed as natural integrators of carbon release processes in their watersheds. The signals held in estuarine surface sediments revealed that average radiocarbon ages of n-alkanes increased east-to-west from 6400 yr BP in Kolyma to 11 400 yr BP in Ob. This is consistent with westwards trends of both warmer climate and more degraded organic matter as indicated by the ratio of high molecular weight (HMW n-alkanoic acids to HMW n-alkanes. The dynamics of Siberian permafrost can thus be probed via the molecular-radiocarbon signal as carried by Arctic rivers. Old permafrost carbon is at present vulnerable to mobilization over continental scales. Climate-induced changes in the radiocarbon fingerprint of released permafrost carbon will likely depend on changes in both permafrost coverage and Arctic soil hydraulics.

Wildfires in Siberian Mountain Forest

Science.gov (United States)

Kharuk, V.; Ponomarev, E. I.; Antamoshkina, O.

2017-12-01

The annual burned area in Russia was estimated as 0.55 to 20 Mha with >70% occurred in Siberia. We analyzed Siberian wildfires distribution with respect to elevation, slope steepness and exposure. In addition, wildfires temporal dynamic and latitudinal range were analyzed. We used daily thermal anomalies derived from NOAA/AVHRR and Terra/MODIS satellites (1990-2016). Fire return intervals were (FRI) calculated based on the dendrochronology analysis of samples taken from trees with burn marks. Spatial distribution of wildfires dependent on topo features: relative burned area increase with elevation increase (ca. 1100 m), switching to following decrease. The wildfires frequency exponentially decreased within lowlands - highlands transition. Burned area is increasing with slope steepness increase (up to 5-10°). Fire return intervals (FRI) on the southfacing slopes are about 30% longer than on the north facing. Wildfire re-occurrence is decreasing exponentially: 90% of burns were caused by single fires, 8.5% by double fires, 1% burned three times, and on about 0.05% territory wildfires occurred four times (observed period: 75 yr.). Wildfires area and number, as well as FRI, also dependent on latitude: relative burned area increasing exponentially in norward direction, whereas relative fire number is exponentially decreasing. FRI increases in the northward direction: from 80 years at 62°N to 200 years at the Arctic Circle, and to 300 years at the northern limit of closed forests ( 71+°N). Fire frequency, fire danger period and FRI are strongly correlated with incoming solar radiation (r = 0.81 - 0.95). In 21-s century, a positive trend of wildfires number and area observed in mountain areas in all Siberia. Thus, burned area and number of fires in Siberia are significantly increased since 1990th (R2 =0.47, R2 =0.69, respectively), and that increase correlated with air temperatures and climate aridity increases. However, wildfires are essential for supporting fire

THE TURKIC WORLD OF THE RUSSIAN WRITER: “LEGEND ABOUT THE SIBERIAN KHAN, OLD KUCHUM” BY D. N. MAMIN-SIBIRYAK

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Valentina I. Gabdullina

2017-06-01

Full Text Available The article studies the special aspects of the author’s conception of the East and the principles of the reconstruction of the way of life and mentality of the Turks in “Eastern legends” by D. N. Mamin-Sibiryak within the context of the general interest the Russian literature of the turn of the 19th and 20th centuries experienced toward orientalism. Based on the “Legend of the Siberian Khan, Old Kuchum” the process of evolution of the poetic stylization into an individual and author’s version of the genre form is analyzed, as a result of comprehension, aesthetic mastering and the embodiment of the culture of another nation, folkloristic and mythological figurativeness in the artistic text of the Russian writer. In the “Legend…” there is clearly seen the aspiration of the author to show life of the nomadic people “internally”, to look beyond the existing estimative stereotypes about Siberian peoples set in the perception of the Russian in the period of the conquest of Siberia by the troops of the Russian Tsar with ataman Yermak at the head. For the purpose of a comparative analysis the annalistic sources are used (the Esipovsky chronicle. The research is conducted from the perspective of cultural and historical, imagological and motive approaches.

Polycyclic Aromatic Hydrocarbons In Aerosol and Snow Cover of Siberian Towns (east Siberia)

Science.gov (United States)

Gorshkov, A.; Marinayte, I.

Contamination of the atmosphere above Siberian towns has a few peculiarities: (i) level of pollution is presumably determined by discharges of large enterprises sur- rounded by company towns; (ii) long (up to 150 days) winter is characterized by the highest concentrations of pollutants within the near-ground atmospheric layer due to pronounced anti-cyclonic circulation of the atmosphere; (iii) polycyclic aromatic hydrocarbons (PAH) are specific minor components of the aerosols. Relatively high PAH concentrations in aerosol of Siberian towns are caused by the presence of ad- ditional intensive sources of PAH (besides those traditional: gas discharges of met- allurgy, heat-and-power engineering enterprises, and motor transport). These are the discharges of low power (produc- ing plant (50000 residents) - are presented in the report. Daily and seasonal dynamics of aerosol pollution and level of PAH accumulation in snow covers during 1996 U 2001 are estimated. The highest PAH concentrations (total concentrations of identi- fied compounds) are up to 300 ng/m3 in aerosol and up to 16 mg/m2 in snow cover. At day and night temperatures lowering up to -30 oe -40 01057;, the maximum of PAH concentration is observed in the daytime due to displacement of the tempera-ture in- version. When temperature increases, two SclassicalT maximums are observed during & cedil;the morning and the evening hours. It was shown that the effect of Scity air circula- & cedil;tionT caused by air masses transportation above a city from its center to out-skirts (within the near-ground air layer U to its center) does not contribute to efficient level- ing of PAH concentrations. The level of PAH accumulation in snow cover in different citySs sites and within one citySs region is ranging up to 10 times during a season. Calculated benz[a]pyren fluxes allow us to conclude that contamination of the atmo- sphere above Irkutsk (2.5 mkg/m2 per week) is comparable with that above large cities of Western

DNA-Bank of the Siberian Group Chemical Enterprises workers and Seversk city residents

International Nuclear Information System (INIS)

Freidin, M. B.; Goncharova, I. A.; Karpov, A. B.; Takhauov, R. M.

2004-01-01

According to the mostr common definition a DNA-bank is a system of a genetic material storage. Applying to nuclear-chemical plant workers, DNA-bank creation is determined by the necessity to preserve a hereditary material of these people and their descendants for the further evaluation of consequences fo technogenic factors action on human genome using a contemporary conceptual and applied advances of genetics. In the frameworks of the study of technogenic factors indluence on human genome and genetic-caused disorders development the Seversk Biophysical Research Center is being created DNA-bank of Siberian Group of Chemical Enterprises workers exposed to radiation, their descendants, and ZATO Seversk and Tomsk city inhabitants. The DNA-bank will be a basis for all major research laboratory projects: analysis of molecular basis of individual radiosensitivity; analysis of technogenic factors role in congenital malformations and hereditary diseases development in nuclear-chemical plant workers offspring; elaboration of genotype-specific tes-systems of cancer prognosis and development of cardiovascular and other common disorders connected with the effect of technogenic factors. The DNA-bank creation is a technological issue aggravated by ethical problems. Whereas the DNA isolation is not a problem today, ethical complication id debated widely in the world. These questions strongly arise in a view of advances of Human Genome Project. Information consent on DNA usage is imperative today. Also questions on DNA property (who is its owner a doner or a banker) and of a confidentiality, which maintenance is a doubtable question in a case of multiple genetic testing, are not solved today. At present, the Genomic Medicine Laboratory disposes the DNA samples of more than 400 Sevesk and Tomsk inhabitants affected with breast and lung cancer. More than 800 blood samples of main manufacture of the Siberian Group of Chemical Enterprises workers are collected. About 1500 DNA samples

Long-term In Vivo Calcium Imaging of Astrocytes Reveals Distinct Cellular Compartment Responses to Sensory Stimulation.

Science.gov (United States)

Stobart, Jillian L; Ferrari, Kim David; Barrett, Matthew J P; Stobart, Michael J; Looser, Zoe J; Saab, Aiman S; Weber, Bruno

2018-01-01

Localized, heterogeneous calcium transients occur throughout astrocytes, but the characteristics and long-term stability of these signals, particularly in response to sensory stimulation, remain unknown. Here, we used a genetically encoded calcium indicator and an activity-based image analysis scheme to monitor astrocyte calcium activity in vivo. We found that different subcellular compartments (processes, somata, and endfeet) displayed distinct signaling characteristics. Closer examination of individual signals showed that sensory stimulation elevated the number of specific types of calcium peaks within astrocyte processes and somata, in a cortical layer-dependent manner, and that the signals became more synchronous upon sensory stimulation. Although mice genetically lacking astrocytic IP3R-dependent calcium signaling (Ip3r2-/-) had fewer signal peaks, the response to sensory stimulation was sustained, suggesting other calcium pathways are also involved. Long-term imaging of astrocyte populations revealed that all compartments reliably responded to stimulation over several months, but that the location of the response within processes may vary. These previously unknown characteristics of subcellular astrocyte calcium signals provide new insights into how astrocytes may encode local neuronal circuit activity. © The Author 2016. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

EARLY STAGE OF THE CENTRAL ASIAN OROGENIC BELT BUILDING: EVIDENCES FROM THE SOUTHERN SIBERIAN CRATON

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D. P. Gladkochub

2017-01-01

Full Text Available The origin of the Central-Asian Orogenic Belt (CAOB, especially of its northern segment nearby the southern margin of the Siberian craton (SC is directly related to development and closure of the Paleo-Asian Ocean (PAO. Signatures of early stages of the PAO evolution are recorded in the Late Precambrian sedimentary successions of the Sayan-Baikal-Patom Belt (SBPB on the southern edge of SC. These successions are spread over 2000 km and can be traced along this edge from north-west (Sayan area to south-east (Baikal area and further to north-east (Patom area. Here we present the synthesis of all available and reliable LA-ICP-MS U-Pb geochronological studies of detrital zircons from these sedimentary successions.

East Siberian Sea, an Arctic region of very high biogeochemical activity

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L. G. Anderson

2011-06-01

Full Text Available Shelf seas are among the most active biogeochemical marine environments and the East Siberian Sea is a prime example. This sea is supplied by seawater from both the Atlantic and Pacific Oceans and has a substantial input of river runoff. All of these waters contribute chemical constituents, dissolved and particulate, but of different signatures. Sea ice formation during the winter season and melting in the summer has a major impact on physical as well as biogeochemical conditions. The internal circulation and water mass distribution is significantly influenced by the atmospheric pressure field. The western region is dominated by input of river runoff from the Laptev Sea and an extensive input of terrestrial organic matter. The microbial decay of this organic matter produces carbon dioxide (CO₂ that oversaturates all waters from the surface to bottom relative to atmospheric level, even when primary production, inferred from low surface water nutrients, has occurred. The eastern surface waters were under-saturated with respect to CO₂ illustrating the dominance of marine primary production. The drawdown of dissolved inorganic carbon equals a primary production of ~0.8 ± 2 mol C m⁻², which when multiplied by half the area of the East Siberian Sea, ~500 000 km², results in an annual primary production of 0.4 (± 1 × 10¹² mol C or ~4 (± 10 × 10¹² gC. Microbial decay occurs through much of the water column, but dominates at the sediment interface where the majority of organic matter ends up, thus more of the decay products are recycled to the bottom water. High nutrient concentrations and fugacity of CO₂ and low oxygen and pH were observed in the bottom waters. Another signature of organic matter decomposition, methane (CH₄, was observed in very high but variable concentrations. This is due to its seabed sources of glacial origin or modern production from

Discovery and characterization of submarine groundwater discharge in the Siberian Arctic seas: A case study in Buor-Khaya Gulf, Laptev Sea

OpenAIRE

Charkin, Alexander N.; Rutgers van der Loeff, Michiel; Shakhova, Natalia E.; Gustafsson, Örjan; Dudarev, Oleg V.; Cherepnev, Maxim S.; Salyuk, Anatoly N.; Koshurnikov, Andrey V.; Spivak, Eduard A.; Gunar, Alexey Y.; Semiletov, Igor P.

2017-01-01

It has been suggested that increasing freshwater discharge to the Arctic Ocean may also occur as submarine groundwater discharge (SGD), yet there are no direct observations of this phenomenon in the Arctic shelf seas. This study tests the hypothesis that SGD does exist in the Siberian-Arctic shelf seas but its dynamics may be largely controlled by complicated geocryological conditions such as permafrost. The field-observational approach in the southeast Laptev Sea used a combination of hydrol...

Distinct signaling roles of ceramide species in yeast revealed through systematic perturbation and systems biology analyses.

Science.gov (United States)

Montefusco, David J; Chen, Lujia; Matmati, Nabil; Lu, Songjian; Newcomb, Benjamin; Cooper, Gregory F; Hannun, Yusuf A; Lu, Xinghua

2013-10-29

Ceramide, the central molecule of sphingolipid metabolism, is an important bioactive molecule that participates in various cellular regulatory events and that has been implicated in disease. Deciphering ceramide signaling is challenging because multiple ceramide species exist, and many of them may have distinct functions. We applied systems biology and molecular approaches to perturb ceramide metabolism in the yeast Saccharomyces cerevisiae and inferred causal relationships between ceramide species and their potential targets by combining lipidomic, genomic, and transcriptomic analyses. We found that during heat stress, distinct metabolic mechanisms controlled the abundance of different groups of ceramide species and provided experimental support for the importance of the dihydroceramidase Ydc1 in mediating the decrease in dihydroceramides during heat stress. Additionally, distinct groups of ceramide species, with different N-acyl chains and hydroxylations, regulated different sets of functionally related genes, indicating that the structural complexity of these lipids produces functional diversity. The transcriptional modules that we identified provide a resource to begin to dissect the specific functions of ceramides.

Glacial-interglacial variations of microbial communities in permafrost and lake deposits in the Siberian Arctic

Science.gov (United States)

Mangelsdorf, Kai; Bischoff, Juliane; Gattinger, Andreas; Wagner, Dirk

2013-04-01

The Artic regions are expected to be very sensitive to the currently observed climate change. When permafrost is thawing, the stored carbon becomes available again for microbial degradation, forming a potential source for the generation of carbon dioxide and methane with their positive feedback effect on the climate warming. For the prediction of future climate evolution it is, therefore, important to improve our knowledge about the microbial-driven greenhouse gas dynamics in the Siberian Arctic and their response to glacial-interglacial changes in the past. Sample material was drilled on Kurungnahk Island (Russian-German LENA expedition) located in the southern part of the Lena delta and in lake El'gygytgyn (ICDP-project) in the eastern part of Siberia. The Kurungnahk samples comprise Late Pleistocene to Holocene deposits, whereas the lake El'gygytgyn samples cover Middle to Late Pleistocene sediments. Samples were investigated applying a combined biogeochemical and microbiological approach. The methane profile of the Kurungnahk core reveals highest methane contents in the warm and wet Holocene and Late Pleistocene (LP) deposits and correlates largly to the organic carbon (TOC) contents. Archaeol concentrations, being a biomarker for past methanogenic archaea, are also high during the warm and wet Holocene and LP intervals and low during the cold and dry LP periods. This indicates that part of the methane might be produced and trapped in the past. However, biomarkers for living microorganisms (bacteria and archaea) and microbial activity measurements of methanogens point, especially, for the Holocene to a viable archaeal community, indicating a possible in-situ methane production. Furthermore, warm/wet-cold/dry climate cycles are recorded in the archaeal diversity as revealed by genetic fingerprint analysis. Although the overlying lake water buffers the temperature effect on the lake sediments, which never became permafrost, the bacterial and archaeal biomarker

Translational analysis of mouse and human placental protein and mRNA reveals distinct molecular pathologies in human preeclampsia.

Science.gov (United States)

Cox, Brian; Sharma, Parveen; Evangelou, Andreas I; Whiteley, Kathie; Ignatchenko, Vladimir; Ignatchenko, Alex; Baczyk, Dora; Czikk, Marie; Kingdom, John; Rossant, Janet; Gramolini, Anthony O; Adamson, S Lee; Kislinger, Thomas

2011-12-01

Preeclampsia (PE) adversely impacts ~5% of pregnancies. Despite extensive research, no consistent biomarkers or cures have emerged, suggesting that different molecular mechanisms may cause clinically similar disease. To address this, we undertook a proteomics study with three main goals: (1) to identify a panel of cell surface markers that distinguish the trophoblast and endothelial cells of the placenta in the mouse; (2) to translate this marker set to human via the Human Protein Atlas database; and (3) to utilize the validated human trophoblast markers to identify subgroups of human preeclampsia. To achieve these goals, plasma membrane proteins at the blood tissue interfaces were extracted from placentas using intravascular silica-bead perfusion, and then identified using shotgun proteomics. We identified 1181 plasma membrane proteins, of which 171 were enriched at the maternal blood-trophoblast interface and 192 at the fetal endothelial interface with a 70% conservation of expression in humans. Three distinct molecular subgroups of human preeclampsia were identified in existing human microarray data by using expression patterns of trophoblast-enriched proteins. Analysis of all misexpressed genes revealed divergent dysfunctions including angiogenesis (subgroup 1), MAPK signaling (subgroup 2), and hormone biosynthesis and metabolism (subgroup 3). Subgroup 2 lacked expected changes in known preeclampsia markers (sFLT1, sENG) and uniquely overexpressed GNA12. In an independent set of 40 banked placental specimens, GNA12 was overexpressed during preeclampsia when co-incident with chronic hypertension. In the current study we used a novel translational analysis to integrate mouse and human trophoblast protein expression with human microarray data. This strategy identified distinct molecular pathologies in human preeclampsia. We conclude that clinically similar preeclampsia patients exhibit divergent placental gene expression profiles thus implicating divergent

Photoperiod- and Triiodothyronine-dependent Regulation of Reproductive Neuropeptides, Proinflammatory Cytokines, and Peripheral Physiology in Siberian Hamsters (Phodopus sungorus).

Science.gov (United States)

Banks, Ruth; Delibegovic, Mirela; Stevenson, Tyler J

2016-06-01

Seasonal trade-offs in reproduction and immunity are ubiquitous in nature. The mechanisms that govern transitions across seasonal physiological states appear to involve reciprocal switches in the local synthesis of thyroid hormone. In long-day (LD) summer-like conditions, increased hypothalamic triiodothyronine (T3) stimulates gonadal development. Alternatively, short-day (SD) winter-like conditions increase peripheral leukocytes and enhance multiple aspects of immune function. These data indicate that the localized effects of T3 in the hypothalamus and leukocytes are photoperiod dependent. We tested the hypothesis that increased peripheral T3 in SD conditions would increase aspects of reproductive physiology and inhibit immune function, whereas T3 injections in LD conditions would facilitate aspects of immune function (i.e., leukocytes). In addition, we also examined whether T3 regulates hypothalamic neuropeptide expression as well as hypothalamic and splenic proinflammatory cytokine expression. Adult male Siberian hamsters were maintained in LD (15L:9D) or transferred to SD (9L:15D) for 8 weeks. A subset of LD and SD hamsters was treated daily with 5 µg T3 for 2 weeks. LD and SD controls were injected with saline. Daily T3 administration in SD hamsters (SD+T3) resulted in a rapid and substantial decrease in peripheral leukocyte concentrations and stimulated gonadal development. T3 treatment in LD (LD+T3) had no effect on testicular volumes but significantly increased leukocyte concentrations. Molecular analyses revealed that T3 stimulated interleukin 1β messenger RNA (mRNA) expression in the spleen and inhibited RFamide Related Peptide-3 mRNA expression in the hypothalamus. Moreover, there was a photoperiod-dependent decrease in splenic tumor necrosis factor-α mRNA expression. These findings reveal that T3 has tissue-specific and photoperiod-dependent regulation of seasonal rhythms in reproduction and immune function. © 2016 The Author(s).

Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses

DEFF Research Database (Denmark)

Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.

2015-01-01

organic matter on the bacterial communities. The copy number of 16S rRNA genes and transcripts revealed no distinct seasonal changes indicating potential bacterial activity during winter despite soil temperatures well below -10ºC. Multivariate statistical analysis of the bacterial diversity data (DNA......The active layer of soil overlaying permafrost in the Arctic is subjected to dramatic annual changes in temperature and soil chemistry, which likely affect bacterial activity and community structure. We studied seasonal variations in the bacterial community of active layer soil from Svalbard (78º......N) by co-extracting DNA and RNA from 12 soil cores collected monthly over a year. PCR amplicons of 16S rRNA genes (DNA) and reverse transcribed transcripts (cDNA) were quantified and sequenced to test for the effect of low winter temperature and seasonal variation in concentration of easily degradable...

A chemical-genetic strategy reveals distinct temporal requirements for SAD-1 kinase in neuronal polarization and synapse formation

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Shokat Kevan M

2008-09-01

Full Text Available Abstract Background Neurons assemble into a functional network through a sequence of developmental processes including neuronal polarization and synapse formation. In Caenorhabditis elegans, the serine/threonine SAD-1 kinase is essential for proper neuronal polarity and synaptic organization. To determine if SAD-1 activity regulates the establishment or maintenance of these neuronal structures, we examined its temporal requirements using a chemical-genetic method that allows for selective and reversible inactivation of its kinase activity in vivo. Results We generated a PP1 analog-sensitive variant of SAD-1. Through temporal inhibition of SAD-1 kinase activity we show that its activity is required for the establishment of both neuronal polarity and synaptic organization. However, while SAD-1 activity is needed strictly when neurons are polarizing, the temporal requirement for SAD-1 is less stringent in synaptic organization, which can also be re-established during maintenance. Conclusion This study reports the first temporal analysis of a neural kinase activity using the chemical-genetic system. It reveals that neuronal polarity and synaptic organization have distinct temporal requirements for SAD-1.

Reworking of Archean mantle in the NE Siberian craton by carbonatite and silicate melt metasomatism: Evidence from a carbonate-bearing, dunite-to-websterite xenolith suite from the Obnazhennaya kimberlite

Science.gov (United States)

Ionov, Dmitri A.; Doucet, Luc S.; Xu, Yigang; Golovin, Alexander V.; Oleinikov, Oleg B.

2018-03-01

The Obnazhennaya kimberlite in the NE Siberian craton hosts a most unusual cratonic xenolith suite, with common rocks rich in pyroxenes and garnet, and no sheared peridotites. We report petrographic and chemical data for whole rocks (WR) and minerals of 20 spinel and garnet peridotites from Obnazhennaya with Re-depletion Os isotope ages of 1.8-2.9 Ga (Ionov et al., 2015a) as well as 2 pyroxenites. The garnet-bearing rocks equilibrated at 1.6-2.8 GPa and 710-1050 °C. Some xenoliths contain vermicular spinel-pyroxene aggregates with REE patterns in clinopyroxene mimicking those of garnet. The peridotites show significant scatter of Mg# (0.888-0.924), Cr2O3 (0.2-1.4 wt.%) and high NiO (0.3-0.4 wt.%). None are pristine melting residues. Low-CaO-Al2O3 (≤0.9 wt.%) dunites and harzburgites are melt-channel materials. Peridotites with low to moderate Al2O3 (0.4-1.8 wt.%) usually have CaO > Al2O3, and some have pockets of calcite texturally equilibrated with olivine and garnet. Such carbonates, exceptional in mantle xenoliths and reported here for the first time for the Siberian mantle, provide direct evidence for modal makeover and Ca and LREE enrichments by ephemeral carbonate-rich melts. Peridotites rich in CaO and Al2O3 (2.7-8.0 wt.%) formed by reaction with silicate melts. We infer that the mantle lithosphere beneath Obnazhennaya, initially formed in the Mesoarchean, has been profoundly modified. Pervasive inter-granular percolation of highly mobile and reactive carbonate-rich liquids may have reduced the strength of the mantle lithosphere leading the way for reworking by silicate melts. The latest events before the kimberlite eruption were the formation of the carbonate-phlogopite pockets, fine-grained pyroxenite veins and spinel-pyroxene symplectites. The reworked lithospheric sections are preserved at Obnazhennaya, but similar processes could erode lithospheric roots in the SE Siberian craton (Tok) and the North China craton, where ancient melting residues and

Amino acid production exceeds plant nitrogen demand in Siberian tundra

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Wild, Birgit; Eloy Alves, Ricardo J.; Bárta, Jiři; Čapek, Petr; Gentsch, Norman; Guggenberger, Georg; Hugelius, Gustaf; Knoltsch, Anna; Kuhry, Peter; Lashchinskiy, Nikolay; Mikutta, Robert; Palmtag, Juri; Prommer, Judith; Schnecker, Jörg; Shibistova, Olga; Takriti, Mounir; Urich, Tim; Richter, Andreas

2018-03-01

Arctic plant productivity is often limited by low soil N availability. This has been attributed to slow breakdown of N-containing polymers in litter and soil organic matter (SOM) into smaller, available units, and to shallow plant rooting constrained by permafrost and high soil moisture. Using 15N pool dilution assays, we here quantified gross amino acid and ammonium production rates in 97 active layer samples from four sites across the Siberian Arctic. We found that amino acid production in organic layers alone exceeded literature-based estimates of maximum plant N uptake 17-fold and therefore reject the hypothesis that arctic plant N limitation results from slow SOM breakdown. High microbial N use efficiency in organic layers rather suggests strong competition of microorganisms and plants in the dominant rooting zone. Deeper horizons showed lower amino acid production rates per volume, but also lower microbial N use efficiency. Permafrost thaw together with soil drainage might facilitate deeper plant rooting and uptake of previously inaccessible subsoil N, and thereby promote plant productivity in arctic ecosystems. We conclude that changes in microbial decomposer activity, microbial N utilization and plant root density with soil depth interactively control N availability for plants in the Arctic.

Evaluation of oral and subcutaneous delivery of an experimental canarypox recombinant canine distemper vaccine in the Siberian polecate (Mustela eversmanni)

Science.gov (United States)

Wimsatt, Jeffrey; Biggins, Dean E.; Innes, Kim; Taylor, Bobbi; Garell, Della

2003-01-01

We assessed the safety and efficacy of an experimental canarypox-vectored recombinant canine distemper virus (CDV) subunit vaccine in the Siberian polecat (Mustela eversmanni), a close relative of the black-footed ferret, (M. nigripes), an endangered species that is highly susceptible to the virus. Siberian polecats were randomized into six treatment groups. Recombinant canine distemper vaccine was administered s.c. at three dose levels (104.5, 105.0, and 105.5 plaque-forming units [PFU] per dose) and was administered orally by spraying the vaccine into the oropharnyx at two dose levels (105.5, 108.0 PFU per dose). The sixth group of control animals was not vaccinated. For both routes of administration, two 1-ml doses of reconstituted vaccine were delivered 4 wk apart, followed by live virus challenge 3 wk after the second vaccination. During the challenge, Synder Hill test strain CDV obtained from the National Veterinary Services Laboratory in Ames, Iowa, was administered i.p. Serial blood samples for CDV serology were collected immediately before vaccination and challenge, and 10, 15, and 20 days after challenge. Clinical signs and body weights were recorded up to 32 days after challenge. The survival rate in animals receiving vaccine at the highest oral dose (108.0 PFU per dose) was 83.3%. Survival rate was 50.0% in the high s.c. and 60.0% in the medium s.c. groups. All animals in the low–s.c. dose, low–oral dose, and control groups died after exposure. Vaccine dose overall (oral and s.c.) and dose in response to s.c. administration when considered alone were significant predictors of survival (P = 0.006 and P = 0.04, respectively). Among the polecats challenged with virulent virus, those that died became sick sooner than those that survived. Animals that died lost significantly more weight during the 10 days after challenge than did animals that survived (P = 0.02). Survival rates did not differ by sex, founder female status, or breeding pedigree in any of

Genetic signs of multiple colonization events in Baltic ciscoes with radiation into sympatric spring- and autumn-spawners confined to early postglacial arrival.

Science.gov (United States)

Delling, Bo; Palm, Stefan; Palkopoulou, Eleftheria; Prestegaard, Tore

2014-11-01

Presence of sympatric populations may reflect local diversification or secondary contact of already distinct forms. The Baltic cisco (Coregonus albula) normally spawns in late autumn, but in a few lakes in Northern Europe sympatric autumn and spring- or winter-spawners have been described. So far, the evolutionary relationships and taxonomic status of these main life history forms have remained largely unclear. With microsatellites and mtDNA sequences, we analyzed extant and extinct spring- and autumn-spawners from a total of 23 Swedish localities, including sympatric populations. Published sequences from Baltic ciscoes in Germany and Finland, and Coregonus sardinella from North America were also included together with novel mtDNA sequences from Siberian C. sardinella. A clear genetic structure within Sweden was found that included two population assemblages markedly differentiated at microsatellites and apparently fixed for mtDNA haplotypes from two distinct clades. All sympatric Swedish populations belonged to the same assemblage, suggesting parallel evolution of spring-spawning rather than secondary contact. The pattern observed further suggests that postglacial immigration to Northern Europe occurred from at least two different refugia. Previous results showing that mtDNA in Baltic cisco is paraphyletic with respect to North American C. sardinella were confirmed. However, the inclusion of Siberian C. sardinella revealed a more complicated pattern, as these novel haplotypes were found within one of the two main C. albula clades and were clearly distinct from those in North American C. sardinella. The evolutionary history of Northern Hemisphere ciscoes thus seems to be more complex than previously recognized.

Low Amplitude of Geomagnetic Secular Variations Recorded in Traps of the Southern Siberian Platform: Very Fast Emplacement or Regional Remagnetization?

Science.gov (United States)

Veselovskiy, R. V.; Latyshev, A. V.; Pavlov, V. E.

2011-12-01

We have studied the lowest part of the Permo-Triassic Siberian trap sequence which is located in the middle course of the Angara river (Southern Siberia). This sequenced is composed by 200m thick volcanoclastic rocks (tuffs with bombs of different composition) and includes numerous mafic subvolcanic bodies (dykes and sills). Altogether more than 20 sites representing tuffs, bombs, dykes and sills stretched along the valley of the Angara river over the distance more than 30 km have been sampled and studied. Obtained site mean paleomagnetic directions are tightly grouped, showing very lower scatter. Taking into account that amplitude of geomagnetic secular variation at the P-T boundary was about of same order as in Late Cenozoic (Pavlov et al., 2011) this lower scatter can be either a sequence of very fast traps emplacement which could have disastrous environmental impact or a result of subsequent regional remagnetization. The only geological event in the region which seems to be capable to cause this remagnetization is emplacement of Early Triassic sills in nearby areas. In such the case we should expect that mean paleomagnetic directions from these sills will be very close to these ones obtained from site presented in this report. We present results of paleomagnetic studies of these sills and make a choice in favor of one of discussed options. This work was supported by grants NSF EAR 0807585 ("The Siberian Traps and end-Permian extinction") and RFBR 09-05-01180, 10-05-00557.

Co-Opetition (Coexisting Competition and Competitive Coexistaence in the Tourism Field in Siberian Regions

Directory of Open Access Journals (Sweden)

Olga Pavlovna Kuznetsova

2017-03-01

Full Text Available The relevance of the topic is due to the need to use of such category as “co-opetition” by public and local government authorities when implementing their powers in the tourism sphere. We divide the term “co-opetition” into two categories: “coexisting competition” and “competitive coexistence”. The problem field of the study is that in the conditions of crisis development, it is difficult to choose and implement new measures and approaches aimed at improving the economic situation in Russia and its regions, diversify the economy. In modern conditions, it is important and effective to develop domestic tourism and incoming tourism in Russia as well as its effective functioning. Russia has considerable natural and ecological, cultural and historical resources. However, the imperfection of the authorities operation and a mechanism of combined implementation of projects by different territories prevent the transformation of tourism industry into the economic powerhouse. In this regard, on the example of Siberian regions, we offer to the authorities to use co-opetition (in both of its meanings in the combined development of tourism and to establish on this basis the tourist mega-cluster “Fairy Siberia”. The study of foreign experience has allowed revealing the positions, in which Russia falls behind other countries-leaders in the tourism industry. The proposed approach is promising, and it is based on joint efforts of regions and saving money due to the economies of scale. At the same time, it allows the regions to develop their competitive advantages. The practical significance of the received results consists in the possibility of their use by the public and local authorities in the implementation of effective policy for the development of tourism industry.

Optogenetic activation of CA1 pyramidal neurons at the dorsal and ventral hippocampus evokes distinct brain-wide responses revealed by mouse fMRI.

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Norio Takata

Full Text Available The dorsal and ventral hippocampal regions (dHP and vHP are proposed to have distinct functions. Electrophysiological studies have revealed intra-hippocampal variances along the dorsoventral axis. Nevertheless, the extra-hippocampal influences of dHP and vHP activities remain unclear. In this study, we compared the spatial distribution of brain-wide responses upon dHP or vHP activation and further estimate connection strengths between the dHP and the vHP with corresponding extra-hippocampal areas. To achieve this, we first investigated responses of local field potential (LFP and multi unit activities (MUA upon light stimulation in the hippocampus of an anesthetized transgenic mouse, whose CA1 pyramidal neurons expressed a step-function opsin variant of channelrhodopsin-2 (ChR2. Optogenetic stimulation increased hippocampal LFP power at theta, gamma, and ultra-fast frequency bands, and augmented MUA, indicating light-induced activation of CA1 pyramidal neurons. Brain-wide responses examined using fMRI revealed that optogenetic activation at the dHP or vHP caused blood oxygenation level-dependent (BOLD fMRI signals in situ. Although activation at the dHP induced BOLD responses at the vHP, the opposite was not observed. Outside the hippocampal formation, activation at the dHP, but not the vHP, evoked BOLD responses at the retrosplenial cortex (RSP, which is in line with anatomical evidence. In contrast, BOLD responses at the lateral septum (LS were induced only upon vHP activation, even though both dHP and vHP send axonal fibers to the LS. Our findings suggest that the primary targets of dHP and vHP activation are distinct, which concurs with attributed functions of the dHP and RSP in spatial memory, as well as of the vHP and LS in emotional responses.

Topic Modeling Reveals Distinct Interests within an Online Conspiracy Forum

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Colin Klein

2018-02-01

Full Text Available Conspiracy theories play a troubling role in political discourse. Online forums provide a valuable window into everyday conspiracy theorizing, and can give a clue to the motivations and interests of those who post in such forums. Yet this online activity can be difficult to quantify and study. We describe a unique approach to studying online conspiracy theorists which used non-negative matrix factorization to create a topic model of authors' contributions to the main conspiracy forum on Reddit.com. This subreddit provides a large corpus of comments which spans many years and numerous authors. We show that within the forum, there are multiple sub-populations distinguishable by their loadings on different topics in the model. Further, we argue, these differences are interpretable as differences in background beliefs and motivations. The diversity of the distinct subgroups places constraints on theories of what generates conspiracy theorizing. We argue that traditional “monological” believers are only the tip of an iceberg of commenters. Neither simple irrationality nor common preoccupations can account for the observed diversity. Instead, we suggest, those who endorse conspiracies seem to be primarily brought together by epistemological concerns, and that these central concerns link an otherwise heterogenous group of individuals.

Identification of RNA Binding Proteins Associated with Dengue Virus RNA in Infected Cells Reveals Temporally Distinct Host Factor Requirements.

Directory of Open Access Journals (Sweden)

Olga V Viktorovskaya

2016-08-01

Full Text Available There are currently no vaccines or antivirals available for dengue virus infection, which can cause dengue hemorrhagic fever and death. A better understanding of the host pathogen interaction is required to develop effective therapies to treat DENV. In particular, very little is known about how cellular RNA binding proteins interact with viral RNAs. RNAs within cells are not naked; rather they are coated with proteins that affect localization, stability, translation and (for viruses replication.Seventy-nine novel RNA binding proteins for dengue virus (DENV were identified by cross-linking proteins to dengue viral RNA during a live infection in human cells. These cellular proteins were specific and distinct from those previously identified for poliovirus, suggesting a specialized role for these factors in DENV amplification. Knockdown of these proteins demonstrated their function as viral host factors, with evidence for some factors acting early, while others late in infection. Their requirement by DENV for efficient amplification is likely specific, since protein knockdown did not impair the cell fitness for viral amplification of an unrelated virus. The protein abundances of these host factors were not significantly altered during DENV infection, suggesting their interaction with DENV RNA was due to specific recruitment mechanisms. However, at the global proteome level, DENV altered the abundances of proteins in particular classes, including transporter proteins, which were down regulated, and proteins in the ubiquitin proteasome pathway, which were up regulated.The method for identification of host factors described here is robust and broadly applicable to all RNA viruses, providing an avenue to determine the conserved or distinct mechanisms through which diverse viruses manage the viral RNA within cells. This study significantly increases the number of cellular factors known to interact with DENV and reveals how DENV modulates and usurps

Intra-stand variation of cone structure and seed production in Siberian stone pine: pattern and use for breeding

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V.S. Akimov

2013-12-01

Full Text Available Siberian stone pine (Pinus sibirica Du Tour in Russia is primarily valued as a nut-bearing species. Therefore, intra-standvariation in its cone structure and seed production have been actively studied during the last 50 years. However, these studies arepoorly related to practical breeding. We used a novel system of traits to characterize yearly seed crops at the different levels of itsstructural organization. The purpose is to analyze the results of long-term observations of the intra-stand variation of the reproductivefeatures complex, and to reveal the pattern and character of its diversity. This information would be useful to develop the method ofsearching the initial material for breeding. The research plot is established in the Nizhne-Sechenovo forest located 25 km fromTomsk in the south part of the boreal zone (170 years old, mean height 22 m, mean d.b.h. 60 cm. The number of sampled trees variedbetween 40-120 among years. The registration of seed crop and analysis of its structure was conducted every year from 1990 to 2005. Theintra-stand variation of the traits' level was determined as a standard deviation in percent from the simple average. The level ofvariability rose sharply and the correlations between them decreased in the years of the low crops. The results concerning variation in seedand cone traits are listed in the next table. The number of full seeds depended rather on losses in the processes of development (r =0.80*-0.85* than on their starting number (r =0.55*-0.60*. The mass of one seed with sound endosperm rose with an increase in the ratio ofthe ovules, which were lost at the earlier stagesof development (r = 0.20-0.25* and the flat seed ratio (r = 0.35*-0.40*. In year-to-year dynamics, the number of cones per tree ispositively connected with the number of filled seeds per cone (r = 0.78* and with other indices characterizing 'the crop quality'.The breeding rank of trees by all important

An assessment of flux of radionuclide contamination through the large Siberian rivers to the Kara sea

International Nuclear Information System (INIS)

Maderich, V.; Dziuba, N.; Koshebutsky, V.; Zheleznyak, M.; Volkov, V.

2004-01-01

The activities of several nuclear reprocessing plants (Siberian Chemical Combine (SCC) and Mining, Chemical Combine (MCC) and Mayak Production Association (Mayak)) that are placed in the watersheds of large Siberian rivers Ob' and Yenisey may potentially cause contamination of the Arctic Ocean. An assessment of the levels of radionuclide discharges into the Kara Sea from existing and potential sources of techno-genic radioactivity, located within the watershed of the Ob' and Yenisey rivers is presented. In frame of EU INCO-COPERNICUS project RADARC a linked chain of 1D river model RIVTOX and 3D estuary model THREETOX was used to simulate impact of the previous and potential releases from the nuclear installations in the basins of Ob' and Yenisey rivers on radioactive contamination of the rivers and the Kara Sea. The RIVTOX includes the one-dimensional model of river hydraulics, suspended sediment and radionuclide transport in river channels. THREETOX includes a set of submodels: a hydrodynamics sub-model, ice dynamics-thermodynamics sub-model, suspended sediment transport and radionuclide transport submodels. The radionuclide transport model simulate processes in water, suspended sediments and in bottom sediments. These models were adapted to the Ob' river path from Mayak and SCC and Yenisey River from MCC. The simulations of 90 Sr and 137 Cs contamination for the period 1949-1994 were carried out for the Ob' and period 1959-1994 for the Yenisey. The use of model chain allowed to reconstruct contamination of water and sediments along the river path to estimate fluxes into the Kara Sea. It was shown strong initial contamination in early 50's the sediments in the Ob' were sources for secondary contamination of river and estuary. Based on chosen realistic scenarios, simulations have been performed in order to assess the potential risk of contamination from existing and potential sources of radionuclides into the Kara Sea through the Ob' and Yenisey rivers. (author)

Two distinct mtDNA lineages of the blue crab reveal large-scale population structure in its native Atlantic distribution

Science.gov (United States)

Alaniz Rodrigues, Marcos; Dumont, Luiz Felipe Cestari; dos Santos, Cléverson Rannieri Meira; D'Incao, Fernando; Weiss, Steven; Froufe, Elsa

2017-10-01

For the first time, a molecular approach was used to evaluate the phylogenetic structure of the disjunct native American distribution of the blue crab Callinectes sapidus. Population structure was investigated by sequencing 648bp of the Cytochrome oxidase subunit 1 (COI), in a total of 138 sequences stemming from individual samples from both the northern and southern hemispheres of the Western Atlantic distribution of the species. A Bayesian approach was used to construct a phylogenetic tree for all samples, and a 95% confidence parsimony network was created to depict the relationship among haplotypes. Results revealed two highly distinct lineages, one containing all samples from the United States and some from Brazil (lineage 1) and the second restricted to Brazil (lineage 2). In addition, gene flow (at least for females) was detected among estuaries at local scales and there is evidence for shared haplotypes in the south. Furthermore, the findings of this investigation support the contemporary introduction of haplotypes that have apparently spread from the south to the north Atlantic.

Revealing the distinct habitat ranges and hybrid zone of genetic sub-populations within Pseudo-nitzschia pungens (Bacillariophyceae) in the West Pacific area.

Science.gov (United States)

Kim, Jin Ho; Wang, Pengbin; Park, Bum Soo; Kim, Joo-Hwan; Patidar, Shailesh Kumar; Han, Myung-Soo

2018-03-01

Genetic sub-populations (clades) of cosmopolitan marine diatom Pseudo-nitzschia pungens might have distinct habitats, and their hybrid zone is suspected in higher latitude area of the West Pacific area, however, it is still unrevealed because of technical difficulties and lack of evidences in natural environments. The aim of this study is to investigate the habitat characteristics of each clade of P. pungens on geographical distribution with the habitat temperature ranges of each clade and to reveal their hybrid zone in the West Pacific area. We employed the 137 number of nucleotide sequences of P. pungens and its sampling data (spatial and temporal scale) originated from the West Pacific area, and used field application of qPCR assay for intra-specific level of P. pungens. Only two genotypes, clade I and III, were identified in the West Pacific area. Clade I was distributed from 39 to 32.3°N, and clade III were from 1.4 to 34.4°N. The estimated habitat temperature for the clade I and clade III ranges were 8.1-26.9 °C and 24.2-31.2 °C, respectively. The latitudinal distributions and temperature ranges of each clade were significantly different. The qPCR assay employed, and results suggested that the hybrid zone for clade I and III has been observed in the southern Korean coasts, and clade III might be introduced from the Southern Pacific area. The cell abundances of clade III were strongly related with the higher seawater temperature and warm current force. This study has defined distinct habitat characteristics of genetically different sub-populations of P. pungens, and revealed its hybrid zone in natural environment for the first time. We also provided strong evidences about dispersion of the population of clade III to higher latitude in the West Pacific area. Copyright © 2018. Published by Elsevier B.V.

Two distinct microbial communities revealed in the sponge Cinachyrella

Science.gov (United States)

Cuvelier, Marie L.; Blake, Emily; Mulheron, Rebecca; McCarthy, Peter J.; Blackwelder, Patricia; Thurber, Rebecca L. Vega; Lopez, Jose V.

2014-01-01

Marine sponges are vital components of benthic and coral reef ecosystems, providing shelter and nutrition for many organisms. In addition, sponges act as an essential carbon and nutrient link between the pelagic and benthic environment by filtering large quantities of seawater. Many sponge species harbor a diverse microbial community (including Archaea, Bacteria and Eukaryotes), which can constitute up to 50% of the sponge biomass. Sponges of the genus Cinachyrella are common in Caribbean and Floridian reefs and their archaeal and bacterial microbiomes were explored here using 16S rRNA gene tag pyrosequencing. Cinachyrella specimens and seawater samples were collected from the same South Florida reef at two different times of year. In total, 639 OTUs (12 archaeal and 627 bacterial) belonging to 2 archaeal and 21 bacterial phyla were detected in the sponges. Based on their microbiomes, the six sponge samples formed two distinct groups, namely sponge group 1 (SG1) with lower diversity (Shannon-Weiner index: 3.73 ± 0.22) and SG2 with higher diversity (Shannon-Weiner index: 5.95 ± 0.25). Hosts' 28S rRNA gene sequences further confirmed that the sponge specimens were composed of two taxa closely related to Cinachyrella kuekenthalli. Both sponge groups were dominated by Proteobacteria, but Alphaproteobacteria were significantly more abundant in SG1. SG2 harbored many bacterial phyla (>1% of sequences) present in low abundance or below detection limits (<0.07%) in SG1 including: Acidobacteria, Chloroflexi, Gemmatimonadetes, Nitrospirae, PAUC34f, Poribacteria, and Verrucomicrobia. Furthermore, SG1 and SG2 only had 95 OTUs in common, representing 30.5 and 22.4% of SG1 and SG2's total OTUs, respectively. These results suggest that the sponge host may exert a pivotal influence on the nature and structure of the microbial community and may only be marginally affected by external environment parameters. PMID:25408689

Two distinct microbial communities revealed in the sponge Cinachyrella

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Marie Laure Cuvelier

2014-11-01

Full Text Available Marine sponges are vital components of benthic and coral reef ecosystems, providing shelter and nutrition for many organisms. In addition, sponges act as an essential carbon and nutrient link between the pelagic and benthic environment by filtering large quantities of seawater. Many sponge species harbor a diverse microbial community (including Archaea, Bacteria and Eukaryotes, which can constitute up to 50% of the sponge biomass. Sponges of the genus Cinachyrella are common in Caribbean and Floridian reefs and their archaeal and bacterial microbiomes were explored here using 16S rDNA tag pyrosequencing. Cinachyrella specimens and seawater samples were collected from the same South Florida reef at two different times of year. In total, 639 OTUs (12 archaeal and 627 bacterial belonging to 2 archaeal and 21 bacterial phyla were detected in the sponges. Based on their microbiomes, the six sponge samples formed two distinct groups, namely sponge group 1 (SG1 with low diversity (Shannon-Weiner index: 3.73 ± 0.22 and SG2 with higher diversity (Shannon-Weiner index: 5.95 ± 0.25. Hosts’ 28S rDNA sequences further confirmed that the sponge specimens were composed of two taxa closely related to Cinachyrella kuekenthalli. Both sponge groups were dominated by Proteobacteria, but Alphaproteobacteria were significantly more abundant in SG1. SG2 harbored many bacterial phyla (>1% of sequences present in low abundance or below detection limits (<0.07% in SG1 including: Acidobacteria, Chloroflexi, Gemmatimonadetes, Nitrospirae, PAUC34f, Poribacteria and Verrucomicrobia. Furthermore, SG1 and SG2 only had 95 OTUs in common, representing 30.5% and 22.4% of SG1 and SG2’s total OTUs, respectively. These results suggest that the sponge host may exert a pivotal influence on the nature and structure of the microbial community and may only be marginally affected by external environment parameters.

The structure of a conserved piezo channel domain reveals a topologically distinct β sandwich fold.

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Kamajaya, Aron; Kaiser, Jens T; Lee, Jonas; Reid, Michelle; Rees, Douglas C

2014-10-07

Piezo has recently been identified as a family of eukaryotic mechanosensitive channels composed of subunits containing over 2,000 amino acids, without recognizable sequence similarity to other channels. Here, we present the crystal structure of a large, conserved extramembrane domain located just before the last predicted transmembrane helix of C. elegans PIEZO, which adopts a topologically distinct β sandwich fold. The structure was also determined of a point mutation located on a conserved surface at the position equivalent to the human PIEZO1 mutation found in dehydrated hereditary stomatocytosis patients (M2225R). While the point mutation does not change the overall domain structure, it does alter the surface electrostatic potential that may perturb interactions with a yet-to-be-identified ligand or protein. The lack of structural similarity between this domain and any previously characterized fold, including those of eukaryotic and bacterial channels, highlights the distinctive nature of the Piezo family of eukaryotic mechanosensitive channels. Copyright © 2014 Elsevier Ltd. All rights reserved.

Stratigraphic dictionary of the mesozoic and cenozoic deposits of the western Siberian lowland. Stratigraficheskii slovar' mezozoiskikh i kainozoiskikh otlozhenii zapadno-Sibirskoi nizmennosti

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Rostovtseva, N N

1978-01-01

The dictionary contains 655 descriptions of stratigraphic subdivisions (series, suites, subsuites, layers, packets, horizons, strata) of Triassic, Jurassic, Cretaceous, Tertiary, Neogene, and Quaternary deposits of the western Siberian lowland. Also presented are maps indicating the demarcation limits of all of the adopted stratigraphic subdivisions (Appendices 1 to 14), and correlative stratigraphic diagrams (Appendices 15 to 21). The dictionary may be of use as a reference manual for geologists of all fields of specialization, particularly for those working in western Siberia. 202 references, 21 figures.

Dissolved organic matter and its optical characteristics in the Laptev and East Siberian seas: spatial distribution and interannual variability (2003–2011

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S. P. Pugach

2018-02-01

Full Text Available The East Siberian Arctic Shelf (ESAS is the broadest and shallowest continental shelf in the world. It is characterized by both the highest rate of coastal erosion in the world and a large riverine input of terrigenous dissolved organic matter (DOM. DOM plays a significant role in marine aquatic ecosystems. The chromophoric fraction of DOM (CDOM directly affects the quantity and spectral quality of available light, thereby impacting both primary production and ultraviolet (UV exposure in aquatic ecosystems. A multiyear study of CDOM absorption, fluorescence, and spectral characteristics was carried out over the vast ESAS in the summer–fall seasons. The paper describes observations accomplished at 286 stations and 1766 in situ high-resolution optical measurements distributed along the nearshore zone. Spatial and interannual CDOM dynamics over the ESAS were investigated, and driving factors were identified. It was shown that the atmospheric circulation regime is the dominant factor controlling CDOM distribution on the ESAS. This paper explores the possibility of using CDOM and its spectral parameters to identify the different biogeochemical regimes in the surveyed area. The analysis of CDOM spectral characteristics showed that the major part of the Laptev and East Siberian seas shelf is influenced by terrigenous DOM carried in riverine discharge. Western and eastern provinces of the ESAS with distinctly different DOM optical properties were also identified; a transition between the two provinces at around 165–170° E, also consistent with hydrological and hydrochemical data, is shown. In the western ESAS, a region of substantial river impact, the content of aromatic carbon within DOM remains almost constant. In the eastern ESAS, a gradual decrease in aromaticity percentage was observed, indicating contribution of Pacific-origin waters, where allochthonous DOM with predominantly aliphatic character and much smaller absorption capacity

Quantitative image analysis reveals distinct structural transitions during aging in Caenorhabditis elegans tissues.

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Josiah Johnston

2008-07-01

Full Text Available Aging is associated with functional and structural declines in many body systems, even in the absence of underlying disease. In particular, skeletal muscles experience severe declines during aging, a phenomenon termed sarcopenia. Despite the high incidence and severity of sarcopenia, little is known about contributing factors and development. Many studies focus on functional aspects of aging-related tissue decline, while structural details remain understudied. Traditional approaches for quantifying structural changes have assessed individual markers at discrete intervals. Such approaches are inadequate for the complex changes associated with aging. An alternative is to consider changes in overall morphology rather than in specific markers. We have used this approach to quantitatively track tissue architecture during adulthood and aging in the C. elegans pharynx, the neuromuscular feeding organ. Using pattern recognition to analyze aged-grouped pharynx images, we identified discrete step-wise transitions between distinct morphologies. The morphology state transitions were maintained in mutants with pharynx neurotransmission defects, although the pace of the transitions was altered. Longitudinal measurements of pharynx function identified a predictive relationship between mid-life pharynx morphology and function at later ages. These studies demonstrate for the first time that adult tissues undergo distinct structural transitions reflecting postdevelopmental events. The processes that underlie these architectural changes may contribute to increased disease risk during aging, and may be targets for factors that alter the aging rate. This work further demonstrates that pattern analysis of an image series offers a novel and generally accessible approach for quantifying morphological changes and identifying structural biomarkers.

Quantitative image analysis reveals distinct structural transitions during aging in Caenorhabditis elegans tissues.

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Johnston, Josiah; Iser, Wendy B; Chow, David K; Goldberg, Ilya G; Wolkow, Catherine A

2008-07-30

Aging is associated with functional and structural declines in many body systems, even in the absence of underlying disease. In particular, skeletal muscles experience severe declines during aging, a phenomenon termed sarcopenia. Despite the high incidence and severity of sarcopenia, little is known about contributing factors and development. Many studies focus on functional aspects of aging-related tissue decline, while structural details remain understudied. Traditional approaches for quantifying structural changes have assessed individual markers at discrete intervals. Such approaches are inadequate for the complex changes associated with aging. An alternative is to consider changes in overall morphology rather than in specific markers. We have used this approach to quantitatively track tissue architecture during adulthood and aging in the C. elegans pharynx, the neuromuscular feeding organ. Using pattern recognition to analyze aged-grouped pharynx images, we identified discrete step-wise transitions between distinct morphologies. The morphology state transitions were maintained in mutants with pharynx neurotransmission defects, although the pace of the transitions was altered. Longitudinal measurements of pharynx function identified a predictive relationship between mid-life pharynx morphology and function at later ages. These studies demonstrate for the first time that adult tissues undergo distinct structural transitions reflecting postdevelopmental events. The processes that underlie these architectural changes may contribute to increased disease risk during aging, and may be targets for factors that alter the aging rate. This work further demonstrates that pattern analysis of an image series offers a novel and generally accessible approach for quantifying morphological changes and identifying structural biomarkers.

Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins

DEFF Research Database (Denmark)

Cappellini, Enrico; Jensen, Lars Juhl; Szklarczyk, Damian Milosz

2012-01-01

We used high-sensitivity, high-resolution tandem mass spectrometry to shotgun sequence ancient protein remains extracted from a 43 000 year old woolly mammoth (Mammuthus primigenius) bone preserved in the Siberian permafrost. For the first time, 126 unique protein accessions, mostly low-abundance......We used high-sensitivity, high-resolution tandem mass spectrometry to shotgun sequence ancient protein remains extracted from a 43 000 year old woolly mammoth (Mammuthus primigenius) bone preserved in the Siberian permafrost. For the first time, 126 unique protein accessions, mostly low......-abundance extracellular matrix and plasma proteins, were confidently identified by solid molecular evidence. Among the best characterized was the carrier protein serum albumin, presenting two single amino acid substitutions compared to extant African (Loxodonta africana) and Indian (Elephas maximus) elephants. Strong...

Remote sensing of photosynthetic-light-use efficiency of a Siberian boreal forest

International Nuclear Information System (INIS)

Nichol, C.J.; Grace, J.; Shibistova, O.; Matsubara, S.

2002-01-01

The relationship between a physiological index called the photochemical reflectance index (PRI) and photosynthetic light-use-efficiency (LUE) of a Siberian boreal forest during the winter-spring transition, or green-up period, was investigated in 2000. During this time the photosynthetic apparatus was considered under stress as a result of extremes of temperature (from -20 to 35 deg C) coupled with a high radiation load. Reflectance measurements of four stands were made from a helicopter-mounted spectro radiometer and PRI was calculated from these data. Eddy covariance towers were operating at the four stands and offered a means to calculate LUE. A significant linear relationship was apparent between PRI, calculated from the helicopter spectral data, and LUE, calculated from the eddy covariance data, for the four sites sampled. Reflectance measurements were also made of a Scots pine stand from the eddy covariance tower. Needles were also sampled during the time of spectral data acquisition for xanthophyll pigment determination. Strong linear relationships were observed among PRI, the epoxidation state of the xanthophyll cycle (EPS) and LUE over the green-up period and the diurnal cycle at the canopy scale

Run-off and sedimentation processes over the continental shelf along the European-Siberian Tundra coast

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Josefsson, D. [Univ. of Lund (Sweden)

2001-04-01

The contribution of anthropogenic radionuclides from the European sources to the arctic seas have decreased in the first half of the 1990's. This is reflected in the measured activities in the different arctic seas which all show lower concentrations compared to earlier measurements. The influence from the Chernobyl accident were about one third of the total surface activity of {sup 137}CS at the Eurasian continental shelf in 1994 and between 10-30% in the central Arctic Ocean in 1996. The obtained results give no indication of any large extra sources for anthropogenic activity besides the well known fallout from atmospheric nuclear bombs test, discharges from European reprocessing plants and the Chernobyl accident releases. However smaller or local contributions from e.g. the dumped nuclear material in the Kara Sea and releases by the Siberian river from Russian nuclear facilities are not possible to exclude in this investigation.

Siberian population of the New Stone Age: mtDNA haplotype diversity in the ancient population from the Ust'-Ida I burial ground, dated 4020-3210 BC by 14C.

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Naumova O, Y u; Rychkov S, Y u

1998-03-01

On the basis of analysis of mtDNA from skeletal remains, dated by 14C 4020-3210 BC, from the Ust'-Ida I Neolithic burial ground in Cis-Baikal area of Siberia, we obtained genetic characteristics of the ancient Mongoloid population. Using the 7 restriction enzymes for the analysis of site's polymorphism in 16,106-16,545 region of mtDNA, we studied the structure of the most frequent DNA haplotypes, and estimated the intrapopulational nucleotide diversity of the Neolithic population. Comparison of the Neolithic and modern indigeneous populations from Siberia, Mongolia and Ural showed, that the ancient Siberian population is one of the ancestors of the modern population of Siberia. From genetic distance, in the assumption of constant nucleotide substitution rate, we estimated the divergence time between the Neolithic and the modern Siberian population. This divergence time (5572 years ago) is conformed to the age of skeletal remains (5542-5652 years). With use of the 14C dates of the skeletal remains, nucleotide substitution rate in mtDNA was estimated as 1% sequence divergence for 8938-9115 years.

Large-scale expression analysis reveals distinct microRNA profiles at different stages of human neurodevelopment.

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Brandon Smith

Full Text Available BACKGROUND: MicroRNAs (miRNAs are short non-coding RNAs predicted to regulate one third of protein coding genes via mRNA targeting. In conjunction with key transcription factors, such as the repressor REST (RE1 silencing transcription factor, miRNAs play crucial roles in neurogenesis, which requires a highly orchestrated program of gene expression to ensure the appropriate development and function of diverse neural cell types. Whilst previous studies have highlighted select groups of miRNAs during neural development, there remains a need for amenable models in which miRNA expression and function can be analyzed over the duration of neurogenesis. PRINCIPAL FINDINGS: We performed large-scale expression profiling of miRNAs in human NTera2/D1 (NT2 cells during retinoic acid (RA-induced transition from progenitors to fully differentiated neural phenotypes. Our results revealed dynamic changes of miRNA patterns, resulting in distinct miRNA subsets that could be linked to specific neurodevelopmental stages. Moreover, the cell-type specific miRNA subsets were very similar in NT2-derived differentiated cells and human primary neurons and astrocytes. Further analysis identified miRNAs as putative regulators of REST, as well as candidate miRNAs targeted by REST. Finally, we confirmed the existence of two predicted miRNAs; pred-MIR191 and pred-MIR222 associated with SLAIN1 and FOXP2, respectively, and provided some evidence of their potential co-regulation. CONCLUSIONS: In the present study, we demonstrate that regulation of miRNAs occurs in precise patterns indicative of their roles in cell fate commitment, progenitor expansion and differentiation into neurons and glia. Furthermore, the similarity between our NT2 system and primary human cells suggests their roles in molecular pathways critical for human in vivo neurogenesis.

USUAL RUSSIAN ENGINEER: SOCIAL PORTRAITS OF SUBJECTS OF WORK IN THE INTERIOR OF THE SIBERIAN INDUSTRIAL ENTERPRISES

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Kombarov V. Yu.

2014-09-01

Full Text Available At the base of sociological case study done at four Siberian enterprises of military-industrial complex was made a test to construct a typology of workers that vary for different types and trajectories or strategies of subjectivity and can be viewed as kind of continuum - trans-subjectivity - which is characterized by the absence of the subject or by its full manifestation. The relations between phenomenon of subjectivity of the workers and type of social structures of enterprises (organizations is the problem viewed in this article. The author supposes that in the modern tree-vertical-hierarchical structures dominates hypo-subjectivity of workers - phenomenon of the «death of the subject». An alternative is the rhizome structure which allows to «resurrect» the subject - productive worker and to reduce its firmly fixation in the system and to make his social action non-linear. At the base of sociological case study done at four Siberian enterprises of military-industrial complex was made a test to construct a typology of workers that vary for different types of subjectivity. Checking the evolution of interpretations of the concepts of «subjectivity» and «subject», the author concludes that a full-fledged social agent, the actor, the engine of historical and social processes is premature to write off, and that he may still have the main role in the context of transforming dynamics of contemporary social processes. Empirical referent of study and such an active acting, self-referential social agent capable of withstanding discourses of the power, as well as the pressure of capital and the prevailing social ethic machines are engineering and technical personnel of modern Russian industrial enterprises. Relevance in the study of the social stratum of workers due to the author's opinion, the need to enhance the most creative group of workers of the domestic industry, as the main social capital of productive economy, rebuilding and

Vibrio cholerae classical biotype strains reveal distinct signatures in Mexico.

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Alam, Munirul; Islam, M Tarequl; Rashed, Shah Manzur; Johura, Fatema-tuz; Bhuiyan, Nurul A; Delgado, Gabriela; Morales, Rosario; Mendez, Jose Luis; Navarro, Armando; Watanabe, Haruo; Hasan, Nur-A; Colwell, Rita R; Cravioto, Alejandro

2012-07-01

Vibrio cholerae O1 classical (CL) biotype caused the fifth and sixth pandemics, and probably the earlier cholera pandemics, before the El Tor (ET) biotype initiated the seventh pandemic in Asia in the 1970s by completely displacing the CL biotype. Although the CL biotype was thought to be extinct in Asia and although it had never been reported from Latin America, V. cholerae CL and ET biotypes, including a hybrid ET, were found associated with areas of cholera endemicity in Mexico between 1991 and 1997. In this study, CL biotype strains isolated from areas of cholera endemicity in Mexico between 1983 and 1997 were characterized in terms of major phenotypic and genetic traits and compared with CL biotype strains isolated in Bangladesh between 1962 and 1989. According to sero- and biotyping data, all V. cholerae strains tested had the major phenotypic and genotypic characteristics specific for the CL biotype. Antibiograms revealed the majority of the Bangladeshi strains to be resistant to trimethoprim-sulfamethoxazole, furazolidone, ampicillin, and gentamicin, while the Mexican strains were sensitive to all of these drugs, as well as to ciprofloxacin, erythromycin, and tetracycline. Pulsed-field gel electrophoresis (PFGE) of NotI-digested genomic DNA revealed characteristic banding patterns for all of the CL biotype strains although the Mexican strains differed from the Bangladeshi strains in 1 to 2 DNA bands. The difference was subtle but consistent, as confirmed by the subclustering patterns in the PFGE-based dendrogram, and can serve as a regional signature, suggesting the pre-1991 existence and evolution of the CL biotype strains in the Americas, independent from Asia.

Complete Mitochondrial Genomes of the Cherskii's Sculpin Cottus czerskii and Siberian Taimen Hucho taimen Reveal GenBank Entry Errors: Incorrect Species Identification and Recombinant Mitochondrial Genome.

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Balakirev, Evgeniy S; Saveliev, Pavel A; Ayala, Francisco J

2017-01-01

The complete mitochondrial (mt) genome is sequenced in 2 individuals of the Cherskii's sculpin Cottus czerskii . A surprisingly high level of sequence divergence (10.3%) has been detected between the 2 genomes of C czerskii studied here and the GenBank mt genome of C czerskii (KJ956027). At the same time, a surprisingly low level of divergence (1.4%) has been detected between the GenBank C czerskii (KJ956027) and the Amur sculpin Cottus szanaga (KX762049, KX762050). We argue that the observed discrepancies are due to incorrect taxonomic identification so that the GenBank accession number KJ956027 represents actually the mt genome of C szanaga erroneously identified as C czerskii . Our results are of consequence concerning the GenBank database quality, highlighting the potential negative consequences of entry errors, which once they are introduced tend to be propagated among databases and subsequent publications. We illustrate the premise with the data on recombinant mt genome of the Siberian taimen Hucho taimen (NCBI Reference Sequence Database NC_016426.1; GenBank accession number HQ897271.1), bearing 2 introgressed fragments (≈0.9 kb [kilobase]) from 2 lenok subspecies, Brachymystax lenok and Brachymystax lenok tsinlingensis , submitted to GenBank on June 12, 2011. Since the time of submission, the H taimen recombinant mt genome leading to incorrect phylogenetic inferences was propagated in multiple subsequent publications despite the fact that nonrecombinant H taimen genomes were also available (submitted to GenBank on August 2, 2014; KJ711549, KJ711550). Other examples of recombinant sequences persisting in GenBank are also considered. A GenBank Entry Error Depositary is urgently needed to monitor and avoid a progressive accumulation of wrong biological information.

Impact of Climate Change on Siberian High and Wintertime Air Pollution in China in Past Two Decades

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Zhao, Shuyu; Feng, Tian; Tie, Xuexi; Long, Xin; Li, Guohui; Cao, Junji; Zhou, Weijian; An, Zhisheng

2018-02-01

China has suffered severe air pollutions during wintertime as national industrialization and urbanization have been increasingly developed in the past decades. Recent studies suggest that climate change has important impacts on extreme haze events in northern China. This study uses reanalysis datasets to analyze the trend and variability of Siberian High (SiH) intensity, and its relationship with the Arctic temperature and sea ice cover (SIC) in past two decades. The results show that Arctic is warming accompanied by a rapid decline of SIC, while Eurasia is cooling and SiH intensity is gradually enhancing. The statistics illustrates that the SiH has a significantly positive correlation to the temperature (R = 0.70), and a significant anticorrelation to the SIC (R = -0.69), and this is because the warming Arctic and the reducing SIC enhanced the SiH. The enhanced SiH leads to strengthened northerly winds in the North China Plain (NCP). The WRF-Chem model calculation reveals the strengthened northerly winds during the stronger SiH period in January 2016 produce a significant decrease in PM2.5 (particulate matter with aerodynamic diameter less than 2.5 µm) concentrations by 100-200 µg m-3 than that during the weaker one in January 2013. A sensitivity calculation figures out the reduction of PM2.5 concentrations due to a decrease of 50% in emissions is comparable to changes from the weak SiH condition to the strong SiH condition, suggesting that extreme climate variability in the past few years could have an equivalent impact as a consequence of a large emission reduction on wintertime air pollution in the NCP.

Optogenetic Inhibition Reveals Distinct Roles for Basolateral Amygdala Activity at Discrete Time Points during Risky Decision Making.

Science.gov (United States)

Orsini, Caitlin A; Hernandez, Caesar M; Singhal, Sarthak; Kelly, Kyle B; Frazier, Charles J; Bizon, Jennifer L; Setlow, Barry

2017-11-29

Decision making is a multifaceted process, consisting of several distinct phases that likely require different cognitive operations. Previous work showed that the basolateral amygdala (BLA) is a critical substrate for decision making involving risk of punishment; however, it is unclear how the BLA is recruited at different stages of the decision process. To this end, the current study used optogenetics to inhibit the BLA during specific task phases in a model of risky decision making (risky decision-making task) in which rats choose between a small, "safe" reward and a large reward accompanied by varying probabilities of footshock punishment. Male Long-Evans rats received intra-BLA microinjections of viral vectors carrying either halorhodopsin (eNpHR3.0-mCherry) or mCherry alone (control) followed by optic fiber implants and were trained in the risky decision-making task. Laser delivery during the task occurred during intertrial interval, deliberation, or reward outcome phases, the latter of which was further divided into the three possible outcomes (small, safe; large, unpunished; large, punished). Inhibition of the BLA selectively during the deliberation phase decreased choice of the large, risky outcome (decreased risky choice). In contrast, BLA inhibition selectively during delivery of the large, punished outcome increased risky choice. Inhibition had no effect during the other phases, nor did laser delivery affect performance in control rats. Collectively, these data indicate that the BLA can either inhibit or promote choice of risky options, depending on the phase of the decision process in which it is active. SIGNIFICANCE STATEMENT To date, most behavioral neuroscience research on neural mechanisms of decision making has used techniques that preclude assessment of distinct phases of the decision process. Here we show that optogenetic inhibition of the BLA has opposite effects on choice behavior in a rat model of risky decision making, depending on the phase

Phylogenomic and MALDI-TOF MS analysis of Streptococcus sinensis HKU4T reveals a distinct phylogenetic clade in the genus Streptococcus.

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Teng, Jade L L; Huang, Yi; Tse, Herman; Chen, Jonathan H K; Tang, Ying; Lau, Susanna K P; Woo, Patrick C Y

2014-10-20

Streptococcus sinensis is a recently discovered human pathogen isolated from blood cultures of patients with infective endocarditis. Its phylogenetic position, as well as those of its closely related species, remains inconclusive when single genes were used for phylogenetic analysis. For example, S. sinensis branched out from members of the anginosus, mitis, and sanguinis groups in the 16S ribosomal RNA gene phylogenetic tree, but it was clustered with members of the anginosus and sanguinis groups when groEL gene sequences used for analysis. In this study, we sequenced the draft genome of S. sinensis and used a polyphasic approach, including concatenated genes, whole genomes, and matrix-assisted laser desorption ionization-time of flight mass spectrometry to analyze the phylogeny of S. sinensis. The size of the S. sinensis draft genome is 2.06 Mb, with GC content of 42.2%. Phylogenetic analysis using 50 concatenated genes or whole genomes revealed that S. sinensis formed a distinct cluster with Streptococcus oligofermentans and Streptococcus cristatus, and these three streptococci were clustered with the "sanguinis group." As for phylogenetic analysis using hierarchical cluster analysis of the mass spectra of streptococci, S. sinensis also formed a distinct cluster with S. oligofermentans and S. cristatus, but these three streptococci were clustered with the "mitis group." On the basis of the findings, we propose a novel group, named "sinensis group," to include S. sinensis, S. oligofermentans, and S. cristatus, in the Streptococcus genus. Our study also illustrates the power of phylogenomic analyses for resolving ambiguities in bacterial taxonomy. © The Author(s) 2014. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Histaminergic regulation of seasonal metabolic rhythms in Siberian hamsters.

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I'anson, Helen; Jethwa, Preeti H; Warner, Amy; Ebling, Francis J P

2011-06-01

We investigated whether histaminergic tone contributes to the seasonal catabolic state in Siberian hamsters by determining the effect of ablation of histaminergic neurons on food intake, metabolic rate and body weight. A ribosomal toxin (saporin) conjugated to orexin-B was infused into the ventral tuberomammillary region of the hypothalamus, since most histaminergic neurons express orexin receptors. This caused not only 75-80% loss of histaminergic neurons in the posterior hypothalamus, but also some loss of other orexin-receptor expressing cells e.g. MCH neurons. In the long-day anabolic state, lesions produced a transient post-surgical decrease in body weight, but the hamsters recovered and maintained constant body weight, whereas weight gradually increased in sham-lesioned hamsters. VO(2) in the dark phase was significantly higher in the lesioned hamsters compared to shams, and locomotor activity also tended to be higher. In a second study in short days, sham-treated hamsters showed the expected seasonal decrease in body weight, but weight remained constant in the lesioned hamsters, as in the long-day study. Lesioned hamsters consumed more during the early dark phase and less during the light phase due to an increase in the frequency of meals during the dark and decreased meal size during the light, and their cumulative food intake in their home cages was greater than in the control hamsters. In summary, ablation of orexin-responsive cells in the posterior hypothalamus blocks the short-day induced decline in body weight by preventing seasonal hypophagia, evidence consistent with the hypothesis that central histaminergic mechanisms contribute to long-term regulation of body weight. Copyright © 2011 Elsevier Inc. All rights reserved.

Morbidity from primary glaucoma and its gender-specific aspects amongst the population of Siberian industrial town

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A. L. Onischenko

2015-01-01

Full Text Available Aim: To analyze visual morbidity attributable to primary glaucoma, its eight-year dynamics, and gender differences in Siberian industrial town inhabitants.Methods: Medical records (out-patient and in-patient departments from the database of the sectional information analysis center of Novokuznetsk Health Administration over an eight-year period (2004-2011 were studied. Individual patients diagnosed with primary glaucoma in 2004‑2011 were reviewed only.Results: Standardized primary glaucoma morbidity rate in men and women aged over 40 years was 3.5±0.3 ‰ and 2.6±0.26 ‰, respectively. Men were diagnosed with primary glaucoma earlier than women. In male residents aged over 70 years, primary glaucoma was found more often than in female residents. Male glaucoma patients required in-patient treatment more often than female patients. Primary glaucoma was diagnosed in men and women at 66.1±11.6 and 67.0±10.9 years (on average, respectively (U = 2.27, p = 0.023. 441 of 5424 patients (8.1 % diagnosed with glaucoma in 2004‑2011 subsequently died. The average age at death was 69.0±7.2 years, the median (25 %; 75 % was 71 years (66 years; 75 years. Patients who were diagnosed with primary glaucoma survived for 2.6±1.8 years. The median (25 %; 75 % was 2 years (1 year; 4 years. The distribution of the variable that characterized the difference between the age at death and the age of diagnosis making was abnormal (D = 0.151, p<0.001. Half of glaucoma patients died in the first two years after glaucoma has been diagnosed. Less than 20 % of patients (16 % men, 18 % women survived for ≥4 years after primary glaucoma diagnosis has been made. Conclusion: The analysis of morbidity and mortality rates as well as disability due to impaired vision is of great importance to health official and practitioners. Stably low glaucoma morbidity rate in Siberian industrial town inhabitants indicates a great lack of glaucoma specialists and forces

Influence of the Siberian larch extract on the processes of peroxide oxidation of lipids in experiment

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Pateyuk Andrey

2016-03-01

Full Text Available In modern conditions wood processing is one of the primary branches of production in Transbaikal region. In connection with big squares of logging the question of processing and utilizing waste products directly on the spot is particularly acute. We researched the activity of water extract from sawdust of Siberian larch "Ekstrapinus" on the power exchange and processes of peroxide oxidation of lipids against immobilized stress in experiment. The data provided in the article prove that the use of Ekstrapinus extract reduces the pathological violations arising under stress. So, Ekstrapinus extract restores energy potential of cages when modeling stress, restores energy potential of cells, normalizes balance in the system "peroxide oxidation of lipids – antioxidant protection" and supports the balance of tiol in an animal organism in the state of stress. Considering absence of toxicity in the recommended doses, it is possible to recommend their application under stress.

Comparative Genomic Analyses of Multiple Pseudomonas Strains Infecting Corylus avellana Trees Reveal the Occurrence of Two Genetic Clusters with Both Common and Distinctive Virulence and Fitness Traits

Science.gov (United States)

Marcelletti, Simone; Scortichini, Marco

2015-01-01

The European hazelnut (Corylus avellana) is threatened in Europe by several pseudomonads which cause symptoms ranging from twig dieback to tree death. A comparison of the draft genomes of nine Pseudomonas strains isolated from symptomatic C. avellana trees was performed to identify common and distinctive genomic traits. The thorough assessment of genetic relationships among the strains revealed two clearly distinct clusters: P. avellanae and P. syringae. The latter including the pathovars avellanae, coryli and syringae. Between these two clusters, no recombination event was found. A genomic island of approximately 20 kb, containing the hrp/hrc type III secretion system gene cluster, was found to be present without any genomic difference in all nine pseudomonads. The type III secretion system effector repertoires were remarkably different in the two groups, with P. avellanae showing a higher number of effectors. Homologue genes of the antimetabolite mangotoxin and ice nucleation activity clusters were found solely in all P. syringae pathovar strains, whereas the siderophore yersiniabactin was only present in P. avellanae. All nine strains have genes coding for pectic enzymes and sucrose metabolism. By contrast, they do not have genes coding for indolacetic acid and anti-insect toxin. Collectively, this study reveals that genomically different Pseudomonas can converge on the same host plant by suppressing the host defence mechanisms with the use of different virulence weapons. The integration into their genomes of a horizontally acquired genomic island could play a fundamental role in their evolution, perhaps giving them the ability to exploit new ecological niches. PMID:26147218

Poleward upgliding Siberian atmospheric rivers over sea ice heat up Arctic upper air.

Science.gov (United States)

Komatsu, Kensuke K; Alexeev, Vladimir A; Repina, Irina A; Tachibana, Yoshihiro

2018-02-13

We carried out upper air measurements with radiosondes during the summer over the Arctic Ocean from an icebreaker moving poleward from an ice-free region, through the ice edge, and into a region of thick ice. Rapid warming of the Arctic is a significant environmental issue that occurs not only at the surface but also throughout the troposphere. In addition to the widely accepted mechanisms responsible for the increase of tropospheric warming during the summer over the Arctic, we showed a new potential contributing process to the increase, based on our direct observations and supporting numerical simulations and statistical analyses using a long-term reanalysis dataset. We refer to this new process as "Siberian Atmospheric Rivers (SARs)". Poleward upglides of SARs over cold air domes overlying sea ice provide the upper atmosphere with extra heat via condensation of water vapour. This heating drives increased buoyancy and further strengthens the ascent and heating of the mid-troposphere. This process requires the combination of SARs and sea ice as a land-ocean-atmosphere system, the implication being that large-scale heat and moisture transport from the lower latitudes can remotely amplify the warming of the Arctic troposphere in the summer.

Chronic exposure to dim light at night suppresses immune responses in Siberian hamsters.

Science.gov (United States)

Bedrosian, Tracy A; Fonken, Laura K; Walton, James C; Nelson, Randy J

2011-06-23

Species have been adapted to specific niches optimizing survival and reproduction; however, urbanization by humans has dramatically altered natural habitats. Artificial light at night (LAN), termed 'light pollution', is an often overlooked, yet increasing disruptor of habitats, which perturbs physiological processes that rely on precise light information. For example, LAN alters the timing of reproduction and activity in some species, which decreases the odds of successful breeding and increases the threat of predation for these individuals, leading to reduced fitness. LAN also suppresses immune function, an important proxy for survival. To investigate the impact of LAN in a species naive to light pollution in its native habitat, immune function was examined in Siberian hamsters derived from wild-caught stock. After four weeks exposure to dim LAN, immune responses to three different challenges were assessed: (i) delayed-type hypersensitivity (DTH), (ii) lipopolysaccharide-induced fever, and (iii) bactericide activity of blood. LAN suppressed DTH response and reduced bactericide activity of blood after lipopolysaccharide treatment, in addition to altering daily patterns of locomotor activity, suggesting that human encroachment on habitats via night-time lighting may inadvertently compromise immune function and ultimately fitness.

Nanoscience and nanotechnology in the Siberian Branch of the Russian Academy of Sciences: bibliometric analysis and evaluation

International Nuclear Information System (INIS)

Lavrik, Olga L.; Busygina, Tatyana V.; Shaburova, Natalya N.; Zibareva, Inna V.

2015-01-01

The multidimensional bibliometric analysis of publications on nanoscience and nanotechnology (NS&NT) produced by the researchers of the Siberian Branch of the Russian Academy of Sciences (SB RAS) in 2007–2012 has shown their growing publication activity and international visibility in the field and the main objects of research such as nanoparticles, nanostructures (nanostructured materials), nanotubes (especially carbon ones), nanocomposites, nanocrystals, nanotechnology, and nanoelectronics and identified the most productive authors and institutes, as well as the most cited publications. It was made using the data from multidisciplinary (Web of Science, Scopus, and Russian Index of Scientific Citation) and specialized (Chemical Abstracts Plus and Inspec) information resources, that is from international (WoS, Scopus, CAPlus, and Inspec) and national (RISC) data bases. The analysis has shown that most of the SB RAS research works on NS&NT are concentrated in Novosibirsk Scientific Centre

Nanoscience and nanotechnology in the Siberian Branch of the Russian Academy of Sciences: bibliometric analysis and evaluation

Science.gov (United States)

Lavrik, Olga L.; Busygina, Tatyana V.; Shaburova, Natalya N.; Zibareva, Inna V.

2015-02-01

The multidimensional bibliometric analysis of publications on nanoscience and nanotechnology (NS&NT) produced by the researchers of the Siberian Branch of the Russian Academy of Sciences (SB RAS) in 2007-2012 has shown their growing publication activity and international visibility in the field and the main objects of research such as nanoparticles, nanostructures (nanostructured materials), nanotubes (especially carbon ones), nanocomposites, nanocrystals, nanotechnology, and nanoelectronics and identified the most productive authors and institutes, as well as the most cited publications. It was made using the data from multidisciplinary (Web of Science, Scopus, and Russian Index of Scientific Citation) and specialized (Chemical Abstracts Plus and Inspec) information resources, that is from international (WoS, Scopus, CAPlus, and Inspec) and national (RISC) data bases. The analysis has shown that most of the SB RAS research works on NS&NT are concentrated in Novosibirsk Scientific Centre.

Nanoscience and nanotechnology in the Siberian Branch of the Russian Academy of Sciences: bibliometric analysis and evaluation

Energy Technology Data Exchange (ETDEWEB)

Lavrik, Olga L., E-mail: lisa@spsl.nsc.ru; Busygina, Tatyana V. [Russian Academy of Sciences, State Public Scientific and Technological Library, Siberian Branch (Russian Federation); Shaburova, Natalya N. [Russian Academy of Sciences, Rzhanov Institute of Semiconductor Physics, Siberian Branch (Russian Federation); Zibareva, Inna V., E-mail: zibareva@catalysis.ru [Russian Academy of Sciences, Boreskov Institute of Catalysis, Siberian Branch (Russian Federation)

2015-02-15

The multidimensional bibliometric analysis of publications on nanoscience and nanotechnology (NS&NT) produced by the researchers of the Siberian Branch of the Russian Academy of Sciences (SB RAS) in 2007–2012 has shown their growing publication activity and international visibility in the field and the main objects of research such as nanoparticles, nanostructures (nanostructured materials), nanotubes (especially carbon ones), nanocomposites, nanocrystals, nanotechnology, and nanoelectronics and identified the most productive authors and institutes, as well as the most cited publications. It was made using the data from multidisciplinary (Web of Science, Scopus, and Russian Index of Scientific Citation) and specialized (Chemical Abstracts Plus and Inspec) information resources, that is from international (WoS, Scopus, CAPlus, and Inspec) and national (RISC) data bases. The analysis has shown that most of the SB RAS research works on NS&NT are concentrated in Novosibirsk Scientific Centre.

Protection from ground faults in the stator winding of generators at power plants in the Siberian networks

International Nuclear Information System (INIS)

Vainshtein, R. A.; Lapin, V. I.; Naumov, A. M.; Doronin, A. V.; Yudin, S. M.

2010-01-01

The experience of many years of experience in developing and utilization of ground fault protection in the stator winding of generators in the Siberian networks is generalized. The main method of protection is to apply a direct current or an alternating current with a frequency of 25 Hz to the primary circuits of the stator. A direct current is applied to turbo generators operating in a unit with a transformer without a resistive coupling to the external grid or to other generators. Applying a 25 Hz control current is appropriate for power generation systems with compensation of a capacitive short circuit current to ground. This method forms the basis for protection of generators operating on busbars, hydroelectric generators with a neutral grounded through an arc-suppression reactor, including in consolidated units with generators operating in parallel on a single low-voltage transformer winding.

Sources, degradation and transport of terrigenous organic carbon on the East Siberian Arctic Shelf Seas

Science.gov (United States)

Tesi, Tommaso; Semiletov, Igor; Dudarev, Oleg; Gustafsson, Örjan

2013-04-01

Recent studies suggest that the present hydrological regime increase observed in the Arctic rivers is mainly the consequence of the changes in permafrost conditions as a result of climate warming. Given the enormous amount of carbon stored in coastal and terrestrial permafrost the potentially increased supply from this large carbon pool to the coastal Arctic Ocean, possibly associated with a translocated release to the atmosphere as CO2, is considered a plausible scenario in a warming climate. However, there is not sufficient information regarding the reactivity of terrigenous material once supplied to the Arctic Ocean. In this study, we address this critical issue by examining the organic composition of surface sediments collected over extensive scales on the East Siberian Arctic Shelf (ESAS) as part of the International Siberian Shelf Study (ISSS). The ESAS represents by far the largest shelf of the Arctic Ocean. Samples were collected from the inner- to the outer-shelf following the sediment transport pathway in a region between the Lena and the Kolyma rivers. The analytical approach includes the characterization of marine and land-derived carbon using a large number of molecular biomarkers obtained by alkaline CuO oxidation such as lignin-phenols, cutin-derived products, p-hydroxy benzenes, benzoic acids, fatty acids, and dicarboxylic acids. Our results indicated high concentrations of terrigenous material in shallow sediments and a marked decrease of terrestrial biomarkers with increasing distance from the coastline. In parallel, lignin-based degradation proxies suggested highly altered terrigenous carbon in mid- and outer-shelf sediments compared to coastal sediments. Furthermore, the ratio of cutin-derived products over lignin significantly increased along the sediment transport pathway. Considering that cutin is considered to be intrinsically more reactive compared to lignin, high values of this ratio off the coastal region were interpreted as selective

Complete Mitochondrial Genomes of the Cherskii’s Sculpin Cottus czerskii and Siberian Taimen Hucho taimen Reveal GenBank Entry Errors: Incorrect Species Identification and Recombinant Mitochondrial Genome

Science.gov (United States)

Balakirev, Evgeniy S; Saveliev, Pavel A; Ayala, Francisco J

2017-01-01

The complete mitochondrial (mt) genome is sequenced in 2 individuals of the Cherskii’s sculpin Cottus czerskii. A surprisingly high level of sequence divergence (10.3%) has been detected between the 2 genomes of C czerskii studied here and the GenBank mt genome of C czerskii (KJ956027). At the same time, a surprisingly low level of divergence (1.4%) has been detected between the GenBank C czerskii (KJ956027) and the Amur sculpin Cottus szanaga (KX762049, KX762050). We argue that the observed discrepancies are due to incorrect taxonomic identification so that the GenBank accession number KJ956027 represents actually the mt genome of C szanaga erroneously identified as C czerskii. Our results are of consequence concerning the GenBank database quality, highlighting the potential negative consequences of entry errors, which once they are introduced tend to be propagated among databases and subsequent publications. We illustrate the premise with the data on recombinant mt genome of the Siberian taimen Hucho taimen (NCBI Reference Sequence Database NC_016426.1; GenBank accession number HQ897271.1), bearing 2 introgressed fragments (≈0.9 kb [kilobase]) from 2 lenok subspecies, Brachymystax lenok and Brachymystax lenok tsinlingensis, submitted to GenBank on June 12, 2011. Since the time of submission, the H taimen recombinant mt genome leading to incorrect phylogenetic inferences was propagated in multiple subsequent publications despite the fact that nonrecombinant H taimen genomes were also available (submitted to GenBank on August 2, 2014; KJ711549, KJ711550). Other examples of recombinant sequences persisting in GenBank are also considered. A GenBank Entry Error Depositary is urgently needed to monitor and avoid a progressive accumulation of wrong biological information. PMID:28890653

Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses

Science.gov (United States)

Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Bælum, Jacob; Taş, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Philipp; Priemé, Anders

2015-01-01

The active layer of soil overlaying permafrost in the Arctic is subjected to dramatic annual changes in temperature and soil chemistry, which likely affect bacterial activity and community structure. We studied seasonal variations in the bacterial community of active layer soil from Svalbard (78°N) by co-extracting DNA and RNA from 12 soil cores collected monthly over a year. PCR amplicons of 16S rRNA genes (DNA) and reverse transcribed transcripts (cDNA) were quantified and sequenced to test for the effect of low winter temperature and seasonal variation in concentration of easily degradable organic matter on the bacterial communities. The copy number of 16S rRNA genes and transcripts revealed no distinct seasonal changes indicating potential bacterial activity during winter despite soil temperatures well below −10°C. Multivariate statistical analysis of the bacterial diversity data (DNA and cDNA libraries) revealed a season-based clustering of the samples, and, e.g., the relative abundance of potentially active Cyanobacteria peaked in June and Alphaproteobacteria increased over the summer and then declined from October to November. The structure of the bulk (DNA-based) community was significantly correlated with pH and dissolved organic carbon, while the potentially active (RNA-based) community structure was not significantly correlated with any of the measured soil parameters. A large fraction of the 16S rRNA transcripts was assigned to nitrogen-fixing bacteria (up to 24% in June) and phototrophic organisms (up to 48% in June) illustrating the potential importance of nitrogen fixation in otherwise nitrogen poor Arctic ecosystems and of phototrophic bacterial activity on the soil surface. PMID:25983731

An overexpression screen of Toxoplasma gondii Rab-GTPases reveals distinct transport routes to the micronemes.

Directory of Open Access Journals (Sweden)

Katrin Kremer

2013-03-01

Full Text Available The basic organisation of the endomembrane system is conserved in all eukaryotes and comparative genome analyses provides compelling evidence that the endomembrane system of the last common eukaryotic ancestor (LCEA is complex with many genes required for regulated traffic being present. Although apicomplexan parasites, causative agents of severe human and animal diseases, appear to have only a basic set of trafficking factors such as Rab-GTPases, they evolved unique secretory organelles (micronemes, rhoptries and dense granules that are sequentially secreted during invasion of the host cell. In order to define the secretory pathway of apicomplexans, we performed an overexpression screen of Rabs in Toxoplasma gondii and identified Rab5A and Rab5C as important regulators of traffic to micronemes and rhoptries. Intriguingly, we found that not all microneme proteins traffic depends on functional Rab5A and Rab5C, indicating the existence of redundant microneme targeting pathways. Using two-colour super-resolution stimulated emission depletion (STED we verified distinct localisations of independent microneme proteins and demonstrate that micronemal organelles are organised in distinct subsets or subcompartments. Our results suggest that apicomplexan parasites modify classical regulators of the endocytic system to carryout essential parasite-specific roles in the biogenesis of their unique secretory organelles.

Variation in Phytochemical Composition Reveals Distinct Divergence of Aloe vera (L.) Burm.f. From Other Aloe Species: Rationale Behind Selective Preference of Aloe vera in Nutritional and Therapeutic Use

Science.gov (United States)

Dey, Priyankar; Dutta, Somit; Chowdhury, Anurag; Das, Abhaya Prasad; Chaudhuri, Tapas Kumar

2017-01-01

In the present study, we have phytochemically characterized 5 different abundant Aloe species, including Aloe vera (L.) Burm.f., using silylation followed by Gas Chromatography-Mass Spectrometry technique and compared the data using multivariate statistical analysis. The results demonstrated clear distinction of the overall phytochemical profile of A vera, highlighted by its divergent spatial arrangement in the component plot. Lowest correlation of the phytochemical profiles were found between A vera and A aristata Haw. (−0.626), whereas highest correlation resided between A aristata and A aspera Haw. (0.899). Among the individual phytochemicals, palmitic acid was identified in highest abundance cumulatively, and carboxylic acids were the most predominant phytochemical species in all the Aloe species. Compared to A vera, linear correlation analysis revealed highest and lowest correlation with A aspera (R 2 = 0.9162) and A aristata (R 2 = 0.6745), respectively. Therefore, A vera demonstrated distinct spatial allocation, reflecting its greater phytochemical variability. PMID:29228808

fMRI Reveals Distinct CNS Processing during Symptomatic and Recovered Complex Regional Pain Syndrome in Children

Science.gov (United States)

Lebel, A.; Becerra, L.; Wallin, D.; Moulton, E. A.; Morris, S.; Pendse, G.; Jasciewicz, J.; Stein, M.; Aiello-Lammens, M.; Grant, E.; Berde, C.; Borsook, D.

2008-01-01

Complex regional pain syndrome (CRPS) in paediatric patients is clinically distinct from the adult condition in which there is often complete resolution of its signs and symptoms within several months to a few years. The ability to compare the symptomatic and asymptomatic condition in the same individuals makes this population interesting for the…

Photoperiodic regulation of glycogen metabolism, glycolysis, and glutamine synthesis in tanycytes of the Siberian hamster suggests novel roles of tanycytes in hypothalamic function.

Science.gov (United States)

Nilaweera, Kanishka; Herwig, Annika; Bolborea, Matei; Campbell, Gill; Mayer, Claus D; Morgan, Peter J; Ebling, Francis J P; Barrett, Perry

2011-11-01

The objective of this study is to investigate the impact of photoperiod on the temporal and spatial expression of genes involved in glucose metabolism in the brain of the seasonal mammal Phodopus sungorus (Siberian hamster). In situ hybridization was performed on brain sections obtained from male hamsters held in long photoperiod (high body weight and developed testes) or short photoperiod (reduced body weight with testicular regression). This analysis revealed upregulation in expression of genes involved in glycogen and glucose metabolism in short photoperiod and localized to the tanycyte layer of the third ventricle. On the basis of these data and a previously identified photoperiod-dependent increase in activity of neighboring hypothalamic neurons, we hypothesized that the observed expression changes may reflect alteration in either metabolic fuel or precursor neurotransmitter supply to surrounding neurons. Gene expression analysis was performed for genes involved in lactate and glutamate transport. This analysis showed that the gene for the lactate transporter MCT2 and glutamate transporter GLAST was decreased in the tanycyte layer in short photoperiod. Expression of mRNA for glutamine synthetase, the final enzyme in the synthesis of the neuronal neurotransmitter precursor, glutamine, was also decreased in short photoperiod. These data suggest a role for tanycytes in modulating glutamate concentrations and neurotransmitter supply in the hypothalamic environment. Copyright © 2011 Wiley-Liss, Inc.

Diverse Brain Myeloid Expression Profiles Reveal Distinct Microglial Activation States and Aspects of Alzheimer’s Disease Not Evident in Mouse Models

Directory of Open Access Journals (Sweden)

Brad A. Friedman

2018-01-01

Full Text Available Microglia, the CNS-resident immune cells, play important roles in disease, but the spectrum of their possible activation states is not well understood. We derived co-regulated gene modules from transcriptional profiles of CNS myeloid cells of diverse mouse models, including new tauopathy model datasets. Using these modules to interpret single-cell data from an Alzheimer’s disease (AD model, we identified microglial subsets—distinct from previously reported “disease-associated microglia”—expressing interferon-related or proliferation modules. We then analyzed whole-tissue RNA profiles from human neurodegenerative diseases, including a new AD dataset. Correcting for altered cellular composition of AD tissue, we observed elevated expression of the neurodegeneration-related modules, but also modules not implicated using expression profiles from mouse models alone. We provide a searchable, interactive database for exploring gene expression in all these datasets (http://research-pub.gene.com/BrainMyeloidLandscape. Understanding the dimensions of CNS myeloid cell activation in human disease may reveal opportunities for therapeutic intervention.

Deep sequencing reveals distinct patterns of DNA methylation in prostate cancer.

Science.gov (United States)

Kim, Jung H; Dhanasekaran, Saravana M; Prensner, John R; Cao, Xuhong; Robinson, Daniel; Kalyana-Sundaram, Shanker; Huang, Christina; Shankar, Sunita; Jing, Xiaojun; Iyer, Matthew; Hu, Ming; Sam, Lee; Grasso, Catherine; Maher, Christopher A; Palanisamy, Nallasivam; Mehra, Rohit; Kominsky, Hal D; Siddiqui, Javed; Yu, Jindan; Qin, Zhaohui S; Chinnaiyan, Arul M

2011-07-01

Beginning with precursor lesions, aberrant DNA methylation marks the entire spectrum of prostate cancer progression. We mapped the global DNA methylation patterns in select prostate tissues and cell lines using MethylPlex-next-generation sequencing (M-NGS). Hidden Markov model-based next-generation sequence analysis identified ∼68,000 methylated regions per sample. While global CpG island (CGI) methylation was not differential between benign adjacent and cancer samples, overall promoter CGI methylation significantly increased from ~12.6% in benign samples to 19.3% and 21.8% in localized and metastatic cancer tissues, respectively (P-value prostate tissues, 2481 differentially methylated regions (DMRs) are cancer-specific, including numerous novel DMRs. A novel cancer-specific DMR in the WFDC2 promoter showed frequent methylation in cancer (17/22 tissues, 6/6 cell lines), but not in the benign tissues (0/10) and normal PrEC cells. Integration of LNCaP DNA methylation and H3K4me3 data suggested an epigenetic mechanism for alternate transcription start site utilization, and these modifications segregated into distinct regions when present on the same promoter. Finally, we observed differences in repeat element methylation, particularly LINE-1, between ERG gene fusion-positive and -negative cancers, and we confirmed this observation using pyrosequencing on a tissue panel. This comprehensive methylome map will further our understanding of epigenetic regulation in prostate cancer progression.

US/Russian cooperative efforts in nuclear material protection, control, and accounting at the Siberian Chemical Combine

International Nuclear Information System (INIS)

Goloskokov, I.; Yarygin, A.; Petrushev, V.; Morgado, R.E.

1998-01-01

The Siberian Chemical Combine (SKhK) is the largest multifunction nuclear production facility in the Russian nuclear complex. Until recently, it produced and processed special nuclear material for the Russian Defense Ministry. SKhK and its US partners in the Department of Energy (DOE) US/Russian Materials Protection, Control, and Accountability (MPC and A) Program are nearing completion of the initial MPC and A upgrades at the six SKhK plant sites that were begun three years ago. Comprehensive enhancements to the physical protection and access control systems are progressing on a site-wide basis while a comprehensive MC and A system is being implemented at the Radiochemical Plant site. SKhK now produces thermal and electrical power, enriches uranium for commercial reactor fuel, reprocesses irradiated fuel, converts high-enriched uranium metal into high-enriched oxide for blending into reactor-grade, low-enriched uranium, and manufactures civilian products. The authors review the progress to date and outline plans for continuing the work in 1999

Molecular cloning and pharmacology of functionally distinct isoforms of the human histamine H(3) receptor

DEFF Research Database (Denmark)

Wellendorph, Petrine; Goodman, M W; Burstein, E S

2002-01-01

The pharmacology of histamine H(3) receptors suggests the presence of distinct receptor isoforms or subtypes. We herein describe multiple, functionally distinct, alternatively spliced isoforms of the human H(3) receptor. Combinatorial splicing at three different sites creates at least six distinct...... receptor isoforms, of which isoforms 1, 2, and 4, encode functional proteins. Detailed pharmacology on isoforms 1 (unspliced receptor), and 2 (which has an 80 amino acid deletion within the third intracellular loop of the protein) revealed that both isoforms displayed robust responses to a series of known...... revealed a rank order of potency at both isoforms of clobenpropit>iodophenpropit>thioperamide, and these drugs are fivefold less potent at isoform 2 than isoform 1. To further explore the pharmacology of H(3) receptor function, we screened 150 clinically relevant neuropsychiatric drugs for H(3) receptor...

Os-Hf-Sr-Nd isotope and PGE systematics of spinel peridotite xenoliths from Tok, SE Siberian craton: Effects of pervasive metasomatism in shallow refractory mantle

Science.gov (United States)

Ionov, Dmitri A.; Shirey, Steven B.; Weis, Dominique; Brügmann, Gerhard

2006-01-01

Os-Hf-Sr-Nd isotopes and PGE were determined in peridotite xenoliths carried to the surface by Quaternary alkali basaltic magmas in the Tokinsky Stanovik Range on the Aldan shield. These data constrain the timing and nature of partial melting and metasomatism in the lithospheric mantle beneath SE Siberian craton. The xenoliths range from the rare fertile spinel lherzolites to the more abundant, strongly metasomatised olivine-rich (70-84%) rocks. Hf-Sr-Nd isotope compositions of the xenoliths are mainly within the fields of oceanic basalts. Most metasomatised xenoliths have lower 143Nd / 144Nd and 176Hf / 177Hf and higher 87Sr / 86Sr than the host basalts indicating that the metasomatism is older and has distinct sources. A few xenoliths have elevated 176Hf / 177Hf (up to 0.2838) and plot above the Hf-Nd mantle array defined by oceanic basalts. 187Os / 188Os in the poorly metasomatised, fertile to moderately refractory (Al2O3 ≥ 1.6%) Tok peridotites range from 0.1156 to 0.1282, with oldest rhenium depletion ages being about 2 Ga. The 187Os / 188Os in these rocks show good correlations with partial melting indices (e.g. Al2O3, modal cpx); the intercept of the Al-187Os / 188Os correlation with lowest Al2O3 estimates for melting residues (∼0.3-0.5%) has a 187Os / 188Os of ∼0.109 suggesting that these peridotites may have experienced melt extraction as early as 2.8 Gy ago. 187Os / 188Os in the strongly metasomatised, olivine-rich xenoliths (0.6-1.3% Al2O3) ranges from 0.1164 to 0.1275 and shows no apparent links to modal or chemical compositions. Convex-upward REE patterns and high abundances of heavy to middle REE in these refractory rocks indicate equilibration with evolved silicate melts at high melt / rock ratios, which may have also variably elevated their 187Os / 188Os. This inference is supported by enrichments in Pd and Pt on chondrite-normalised PGE abundance patterns in some of the rocks. The melt extraction ages for the Tok suite of 2.0 to 2.8 Ga are

Linking tree demography to climate change feedbacks: fire, larch forests, and carbon pools of the Siberian Arctic

Science.gov (United States)

Alexander, H. D.; Loranty, M. M.; Natali, S.; Pena, H., III; Ludwig, S.; Spektor, V.; Davydov, S. P.; Zimov, N.; Mack, M. C.

2017-12-01

Fire severity is increasing in larch forests of the Siberian Arctic as climate warms, and initial fire impacts on tree demographic processes could be an especially important determinant of long-term forest structure and carbon (C) dynamics. We hypothesized that (1) larch forest regrowth post-fire is largely determined by residual soil organic layer (SOL) depth because of the SOL's role as a seedbed and thermal regulator, and (2) changes in post-fire larch recruitment impact C accumulation through stand density impacts on understory microclimate and permafrost thaw. We tested these hypotheses by (1) experimentally creating a soil burn severity gradient in a Cajander larch (Larix cajanderi Mayr.) forest near Cherskiy, Russia and (2) quantifying C pools across a stand density gradient within a 75-year old fire scar. From 2012-2015, we added larch seeds to plots burned at different severities and monitored recruitment along with permafrost and active layer (i.e., subject to annual freeze-thaw) conditions (SOL depth, temperature, moisture, and thaw depth). Across the density gradient, we inventoried larch trees and harvested ground-layer vegetation to estimate aboveground contribution to C pools. We quantified woody debris C pools and sampled belowground C pools (soil, fine roots, and coarse roots) in the organic + upper (0-10 cm) mineral soil. Larch recruits were rare in unburned and low severity plots, but a total of 6 new germinants m-2 were tallied in moderate and high severity plots during the study. Seedling survival for > 1 year was only 40 and 25% on moderate and high severity treatments, respectively, but yielded net larch recruitment of 2 seedlings m-2, compared to 0.3 seedlings m-2 on low severity plots. Density of both total and established recruits increased with decreasing residual SOL depth, which correlated with increased soil temperature, moisture, and thaw depth. At 75-year post-fire, total C pools increased with increased larch density, largely due to

THE TOMSK SCIENTIFIC SCHOOL OF NEUROLOGISTS. TO THE 120TH ANNIVERSARY OF THE DEPARTMENT OF NEUROLOGY AND NEUROSURGERY OF SIBERIAN STATE MEDICAL UNIVERSITY

Directory of Open Access Journals (Sweden)

V. M. Alifirova

2013-01-01

Full Text Available The history of the development of the Tomsk Scientific School Neurologists and the past and current events in the Department of Neurology and Neurosurgery of Siberian State Medical University are described. The Department of Neurology was established in 1881–1882. At a different times the department was headed by many great Russian physicians such as Michail G. Kurlov, Leonid I. Omorokov, Nikolay V. Schubin, Nikolay I. Komandenko. In addition to the academic work the department leads research in many fields of neurology, including movement disorders, cerebrovascular diseases, demyelinating and paroxysmal diseases. 

Vicariance, long-distance dispersal, and regional extinction-recolonization dynamics explain the disjunct circumpolar distribution of the arctic-alpine plant Silene acaulis.

Science.gov (United States)

Gussarova, Galina; Allen, Geraldine A; Mikhaylova, Yulia; McCormick, Laurie J; Mirré, Virginia; Marr, Kendrick L; Hebda, Richard J; Brochmann, Christian

2015-10-01

Many arctic-alpine species have vast geographic ranges, but these may encompass substantial gaps whose origins are poorly understood. Here we address the phylogeographic history of Silene acaulis, a perennial cushion plant with a circumpolar distribution except for a large gap in Siberia. We assessed genetic variation in a range-wide sample of 103 populations using plastid DNA (pDNA) sequences and AFLPs (amplified fragment length polymorphisms). We constructed a haplotype network and performed Bayesian phylogenetic analyses based on plastid sequences. We visualized AFLP patterns using principal coordinate analysis, identified genetic groups using the program structure, and estimated genetic diversity and rarity indices by geographic region. The history of the main pDNA lineages was estimated to span several glaciations. AFLP data revealed a distinct division between Beringia/North America and Europe/East Greenland. These two regions shared only one of 17 pDNA haplotypes. Populations on opposite sides of the Siberian range gap (Ural Mountains and Chukotka) were genetically distinct and appear to have resulted from postglacial leading-edge colonizations. We inferred two refugia in North America (Beringia and the southern Rocky Mountains) and two in Europe (central-southern Europe and northern Europe/East Greenland). Patterns in the East Atlantic region suggested transoceanic long-distance dispersal events. Silene acaulis has a highly dynamic history characterized by vicariance, regional extinction, and recolonization, with persistence in at least four refugia. Long-distance dispersal explains patterns across the Atlantic Ocean, but we found no evidence of dispersal across the Siberian range gap. © 2015 Botanical Society of America.

Comparative 'omics analyses differentiate Mycobacterium tuberculosis and Mycobacterium bovis and reveal distinct macrophage responses to infection with the human and bovine tubercle bacilli

Science.gov (United States)

Malone, Kerri M.; Rue-Albrecht, Kévin; Magee, David A.; Conlon, Kevin; Schubert, Olga T.; Nalpas, Nicolas C.; Browne, John A.; Smyth, Alicia; Gormley, Eamonn; Aebersold, Ruedi; MacHugh, David E.; Gordon, Stephen V.

2018-01-01

Members of the Mycobacterium tuberculosis complex (MTBC) are the causative agents of tuberculosis in a range of mammals, including humans. A key feature of MTBC pathogens is their high degree of genetic identity yet distinct host tropism. Notably, while Mycobacterium bovis is highly virulent and pathogenic for cattle, the human pathogen M. tuberculosis is attenuated in cattle. Previous research also suggests that host preference amongst MTBC members has a basis in host innate immune responses. To explore MTBC host tropism, we present in-depth profiling of the MTBC reference strains M. bovis AF2122/97 and M. tuberculosis H37Rv at both the global transcriptional and the translational level via RNA-sequencing and SWATH MS. Furthermore, a bovine alveolar macrophage infection time course model was used to investigate the shared and divergent host transcriptomic response to infection with M. tuberculosis H37Rv or M. bovis AF2122/97. Significant differential expression of virulence-associated pathways between the two bacilli was revealed, including the ESX-1 secretion system. A divergent transcriptional response was observed between M. tuberculosis H37Rv and M. bovis AF2122/97 infection of bovine alveolar macrophages, in particular cytosolic DNA-sensing pathways at 48 h post-infection, and highlights a distinct engagement of M. bovis with the bovine innate immune system. The work presented here therefore provides a basis for the identification of host innate immune mechanisms subverted by virulent host-adapted mycobacteria to promote their survival during the early stages of infection. PMID:29557774

West Siberian basin hydrogeology - regional framework for contaminant migration from injected wastes

International Nuclear Information System (INIS)

Foley, M.G.

1994-05-01

Nuclear fuel cycle activities of the former Soviet Union (FSU) have resulted in massive contamination of the environment in western Siberia. We are developing three-dimensional numerical models of the hydrogeology and potential contaminant migration in the West Siberian Basin. Our long-term goal at Pacific Northwest Laboratory is to help determine future environmental and human impacts given the releases that have occurred to date and the current waste management practices. In FY 1993, our objectives were to (1) refine and implement the hydrogeologic conceptual models of the regional hydrogeology of western Siberia developed in FY 1992 and develop the detailed, spatially registered digital geologic and hydrologic databases to test them, (2) calibrate the computer implementation of the conceptual models developed in FY 1992, and (3) develop general geologic and hydrologic information and preliminary hydrogeologic conceptual models relevant to the more detailed models of contaminated site hydrogeology. Calibration studies of the regional hydrogeologic computer model suggest that most precipitation entering the ground-water system moves in the near-surface part of the system and discharges to surface waters relatively near its point of infiltration. This means that wastes discharged to the surface and near-surface may not be isolated as well as previously thought, since the wastes may be carried to the surface by gradually rising ground waters

Stress state reconstruction and tectonic evolution of the northern slope of the Baikit anteclise, Siberian Craton, based on 3D seismic data

Science.gov (United States)

Moskalenko, A. N.; Khudoley, A. K.; Khusnitdinov, R. R.

2017-05-01

In this work, we consider application of an original method for determining the indicators of the tectonic stress fields in the northern Baikit anteclise based on 3D seismic data for further reconstruction of the stress state parameters when analyzing structural maps of seismic horizons and corresponded faults. The stress state parameters are determined by the orientations of the main stress axes and shape of the stress ellipsoid. To calculate the stress state parameters from data on the spatial orientations of faults and slip vectors, we used the algorithms from quasiprimary stress computation methods and cataclastic analysis, implemented in the software products FaultKinWin and StressGeol, respectively. The results of this work show that kinematic characteristics of faults regularly change toward the top of succession and that the stress state parameters are characterized by different values of the Lode-Nadai coefficient. Faults are presented as strike-slip faults with normal or reverse component of displacement. Three stages of formation of the faults are revealed: (1) partial inversion of ancient normal faults, (2) the most intense stage with the predominance of thrust and strike-slip faults at north-northeast orientation of an axis of the main compression, and (3) strike-slip faults at the west-northwest orientation of an axis of the main compression. The second and third stages are pre-Vendian in age and correlate to tectonic events that took place during the evolution of the active southwestern margin of the Siberian Craton.

PROJECT OF THE TRANS-SIBERIAN RAILWAY RECONSTRUCTION AS AN OBJECT OF SOCIAL EFFICIENCY EVALUATION

Directory of Open Access Journals (Sweden)

Kibalov E. B.

2015-06-01

Full Text Available We consider the problem of social efficiency evaluation concerning the project of the Trans-Siberian Railway reconstruction. This project is to be realized in the situation of strategic (fundamental uncertainty. Existing tools are not sufficient for solving this problem (because of qualitatively different nature of the project as compared with those abroad, much higher degree of uncertainty, and the lack of estimates for a number of necessary norms. Our study aims at development of an approach that would be adequate to the problem under consideration. We developed a two-level model for investment decision-making for appraisal and selection of a variant of the large-scale project. The upper level of this model bases on the macroeconomic approach (with the use of a specialized version of the Inter-Sector Inter-Region Optimization Model; the lower level bases on the microeconomic approach. As opposed to the foreign practice, the efficiency evaluation and selection of a variant of the transport project is top-down. End-to-end taking uncertainty into account is implemented. A tool for this is the scenario approach on the upper level, and the fuzzy set theory at the lower one.

Monitoring of Siberian biomass burning smoke from AHI on board geostationary satellite Himawari-8

Science.gov (United States)

Sano, I.; Mukai, S.; Yoshida, A.; Nakata, M.; Minoura, H.; Holben, B. N.

2016-12-01

High frequency aerosol measurements are demanded for evaluation of the model simulations, monitoring the atmospheric qualities such as Particulate Matter (PM2.5), and so on. Geostationary satellite provides us with the high frequency information of the atmosphere. Japanese Meteorological Agency (JMA) launched the Himawari-8 geostationary satellite in 2014 and has prepared Himawari-9 for launching in 2016. Both satellites carry new generation imagers named Advanced Himawari Imager (AHI). They have 16 multi-channels from short visible to thermal infrared wavelengths with 1 km IFOV for visible and 2 km for infrared. Each observation is done within 10 minutes for the Earth full disk. Then high frequency Earth observations are realized. AHI has frequently observed biomass burning plume around East Siberia and its transportation according to weather system. This work retrieves aerosol properties due to the Siberian smoke plume and its movements based on the measurements with AHI. The results are compared with ground based measurements which have newly deployed at an AERONET/Niigata site in Japan. It is shown here that continuous measurements of aerosols from geostationary satellite combination with the polar orbiting satellite provide us with much detail information of aerosol.

Distinct soil bacterial communities revealed under a diversely managed agroecosystem.

Directory of Open Access Journals (Sweden)

Raymon S Shange

Full Text Available Land-use change and management practices are normally enacted to manipulate environments to improve conditions that relate to production, remediation, and accommodation. However, their effect on the soil microbial community and their subsequent influence on soil function is still difficult to quantify. Recent applications of molecular techniques to soil biology, especially the use of 16S rRNA, are helping to bridge this gap. In this study, the influence of three land-use systems within a demonstration farm were evaluated with a view to further understand how these practices may impact observed soil bacterial communities. Replicate soil samples collected from the three land-use systems (grazed pine forest, cultivated crop, and grazed pasture on a single soil type. High throughput 16S rRNA gene pyrosequencing was used to generate sequence datasets. The different land use systems showed distinction in the structure of their bacterial communities with respect to the differences detected in cluster analysis as well as diversity indices. Specific taxa, particularly Actinobacteria, Acidobacteria, and classes of Proteobacteria, showed significant shifts across the land-use strata. Families belonging to these taxa broke with notions of copio- and oligotrphy at the class level, as many of the less abundant groups of families of Actinobacteria showed a propensity for soil environments with reduced carbon/nutrient availability. Orders Actinomycetales and Solirubrobacterales showed their highest abundance in the heavily disturbed cultivated system despite the lowest soil organic carbon (SOC values across the site. Selected soil properties ([SOC], total nitrogen [TN], soil texture, phosphodiesterase [PD], alkaline phosphatase [APA], acid phosphatase [ACP] activity, and pH also differed significantly across land-use regimes, with SOM, PD, and pH showing variation consistent with shifts in community structure and composition. These results suggest that use of

Elements of the geological structure of the Western Siberian platform determined from a review of fine-scale satellite photographs in oil and gas prospecting research

Energy Technology Data Exchange (ETDEWEB)

Borovskii, V V; Klopov, A L; Peskovskii, I D; Podsosova, L L

1980-01-01

Dislocations with breaks in continuity and annular objects are identified on fine-scale satellite photographs within the region of the Western Siberian platform. Based on an integrated interpretation of the geological and geophysical data, it is predicted that there exists a relation between the annular objects and the geological structure of deep portions of the earth's crust, the pre-Jurassic basement, and certain levels of the platform mantle. Procedural techniques for the use of magnetic and gravitional data for the purpose of obtaining information about the geological nature of the identified objects are considered.

Metabolomics reveals distinct, antibody-independent, molecular signatures of MS, AQP4-antibody and MOG-antibody disease.

Science.gov (United States)

Jurynczyk, Maciej; Probert, Fay; Yeo, Tianrong; Tackley, George; Claridge, Tim D W; Cavey, Ana; Woodhall, Mark R; Arora, Siddharth; Winkler, Torsten; Schiffer, Eric; Vincent, Angela; DeLuca, Gabriele; Sibson, Nicola R; Isabel Leite, M; Waters, Patrick; Anthony, Daniel C; Palace, Jacqueline

2017-12-06

The overlapping clinical features of relapsing remitting multiple sclerosis (RRMS), aquaporin-4 (AQP4)-antibody (Ab) neuromyelitis optica spectrum disorder (NMOSD), and myelin oligodendrocyte glycoprotein (MOG)-Ab disease mean that detection of disease specific serum antibodies is the gold standard in diagnostics. However, antibody levels are not prognostic and may become undetectable after treatment or during remission. Therefore, there is still a need to discover antibody-independent biomarkers. We sought to discover whether plasma metabolic profiling could provide biomarkers of these three diseases and explore if the metabolic differences are independent of antibody titre. Plasma samples from 108 patients (34 RRMS, 54 AQP4-Ab NMOSD, and 20 MOG-Ab disease) were analysed by nuclear magnetic resonance spectroscopy followed by lipoprotein profiling. Orthogonal partial-least squares discriminatory analysis (OPLS-DA) was used to identify significant differences in the plasma metabolite concentrations and produce models (mathematical algorithms) capable of identifying these diseases. In all instances, the models were highly discriminatory, with a distinct metabolite pattern identified for each disease. In addition, OPLS-DA identified AQP4-Ab NMOSD patient samples with low/undetectable antibody levels with an accuracy of 92%. The AQP4-Ab NMOSD metabolic profile was characterised by decreased levels of scyllo-inositol and small high density lipoprotein particles along with an increase in large low density lipoprotein particles relative to both RRMS and MOG-Ab disease. RRMS plasma exhibited increased histidine and glucose, along with decreased lactate, alanine, and large high density lipoproteins while MOG-Ab disease plasma was defined by increases in formate and leucine coupled with decreased myo-inositol. Despite overlap in clinical measures in these three diseases, the distinct plasma metabolic patterns support their distinct serological profiles and confirm that these

Reconstructing dynamic mental models of facial expressions in prosopagnosia reveals distinct representations for identity and expression.

Science.gov (United States)

Richoz, Anne-Raphaëlle; Jack, Rachael E; Garrod, Oliver G B; Schyns, Philippe G; Caldara, Roberto

2015-04-01

The human face transmits a wealth of signals that readily provide crucial information for social interactions, such as facial identity and emotional expression. Yet, a fundamental question remains unresolved: does the face information for identity and emotional expression categorization tap into common or distinct representational systems? To address this question we tested PS, a pure case of acquired prosopagnosia with bilateral occipitotemporal lesions anatomically sparing the regions that are assumed to contribute to facial expression (de)coding (i.e., the amygdala, the insula and the posterior superior temporal sulcus--pSTS). We previously demonstrated that PS does not use information from the eye region to identify faces, but relies on the suboptimal mouth region. PS's abnormal information use for identity, coupled with her neural dissociation, provides a unique opportunity to probe the existence of a dichotomy in the face representational system. To reconstruct the mental models of the six basic facial expressions of emotion in PS and age-matched healthy observers, we used a novel reverse correlation technique tracking information use on dynamic faces. PS was comparable to controls, using all facial features to (de)code facial expressions with the exception of fear. PS's normal (de)coding of dynamic facial expressions suggests that the face system relies either on distinct representational systems for identity and expression, or dissociable cortical pathways to access them. Interestingly, PS showed a selective impairment for categorizing many static facial expressions, which could be accounted for by her lesion in the right inferior occipital gyrus. PS's advantage for dynamic facial expressions might instead relate to a functionally distinct and sufficient cortical pathway directly connecting the early visual cortex to the spared pSTS. Altogether, our data provide critical insights on the healthy and impaired face systems, question evidence of deficits

Carbon exchange in Western Siberian watershed mires and implication for the greenhouse effect. A spatial temporal modeling approach

Energy Technology Data Exchange (ETDEWEB)

Borren, W.

2007-01-19

The vast watershed mires of Western Siberia formed a significant sink of carbon during the Holocene. Because of their large area these mires might play an important role in the carbon exchange between terrestrial ecosystems and the atmosphere. However, estimation of the Holocene and future carbon balance of whole Western Siberian mires is hampered by the lack of spatially resolved models. The main objective was to assess the carbon exchange fluxes of the mires using a 3-D dynamic approach. These exchange fluxes comprise the sequestration of carbon dioxide (CO2) by peat growth, the emission of methane (CH4) by anaerobic peat decay and the emission of CO2 by aerobic peat decay. From the detailed analysis of peat cores from different sites in the southern taiga of Western Siberia, it emerged that Holocene peat growth and carbon accumulation had different trends, caused by variations in vegetation succession. These differences were strongly influenced by the position in the landscape. Therefore, the effect of climatic change on mire development varied spatially. The indirect effects of climate change through local hydrology appeared to be more important than direct influences of changes in precipitation and temperature. Mire development is closely connected to hydrological dynamics. In the thesis a 3-D dynamic modeling approach is described that makes use of groundwater modeling. In successive timesteps peat growth and decay as well as mire type distribution were calculated, depending on hydrological conditions. The model was forced with a paleo-precipitation record to include variable climatic input. The model results show the Holocene development of a watershed mire from a few small spots to a contiguous mire landscape. As hydrology is the major limiting factor, the mire development is most sensitive to precipitation and evapotranspiration. Under unchanged conditions the mire will grow further, eventually reaching its maximum peat thickness around 11400 yr A.D. Under

Carbon exchange in Western Siberian watershed mires and implication for the greenhouse effect. A spatial temporal modeling approach

International Nuclear Information System (INIS)

Borren, W.

2007-01-01

The vast watershed mires of Western Siberia formed a significant sink of carbon during the Holocene. Because of their large area these mires might play an important role in the carbon exchange between terrestrial ecosystems and the atmosphere. However, estimation of the Holocene and future carbon balance of whole Western Siberian mires is hampered by the lack of spatially resolved models. The main objective was to assess the carbon exchange fluxes of the mires using a 3-D dynamic approach. These exchange fluxes comprise the sequestration of carbon dioxide (CO2) by peat growth, the emission of methane (CH4) by anaerobic peat decay and the emission of CO2 by aerobic peat decay. From the detailed analysis of peat cores from different sites in the southern taiga of Western Siberia, it emerged that Holocene peat growth and carbon accumulation had different trends, caused by variations in vegetation succession. These differences were strongly influenced by the position in the landscape. Therefore, the effect of climatic change on mire development varied spatially. The indirect effects of climate change through local hydrology appeared to be more important than direct influences of changes in precipitation and temperature. Mire development is closely connected to hydrological dynamics. In the thesis a 3-D dynamic modeling approach is described that makes use of groundwater modeling. In successive timesteps peat growth and decay as well as mire type distribution were calculated, depending on hydrological conditions. The model was forced with a paleo-precipitation record to include variable climatic input. The model results show the Holocene development of a watershed mire from a few small spots to a contiguous mire landscape. As hydrology is the major limiting factor, the mire development is most sensitive to precipitation and evapotranspiration. Under unchanged conditions the mire will grow further, eventually reaching its maximum peat thickness around 11400 yr A.D. Under

NMR metabolomics of human lung tumours reveals distinct metabolic signatures for adenocarcinoma and squamous cell carcinoma

OpenAIRE

Rocha, CM; Barros, AS; Goodfellow, BJ; Carreira, IM; Gomes, AA; Sousa, V; Bernardo, J; Carvalho, L; Gil, AM; Duarte, IF

2015-01-01

Lung tumour subtyping, particularly the distinction between adenocarcinoma (AdC) and squamous cell carcinoma (SqCC), is a critical diagnostic requirement. In this work, the metabolic signatures of lung carcinomas were investigated through (1)H NMR metabolomics, with a view to provide additional criteria for improved diagnosis and treatment planning. High Resolution Magic Angle Spinning Nuclear Magnetic Resonance (NMR) spectroscopy was used to analyse matched tumour and adjacent control tissue...

Comparison of mantle lithosphere beneath early Triassic kimberlite fields in Siberian craton reconstructed from deep-seated xenocrysts

Directory of Open Access Journals (Sweden)

I.V. Ashchepkov

2016-07-01

Kharamai mantle clinopyroxenes represent three geochemical types: (1 harzburgitic with inclined linear REE, HFSE troughs and elevated Th, U; (2 lherzolitic or pyroxenitic with round TRE patterns and decreasing incompatible elements; (3 eclogitic with Eu troughs, Pb peak and high LILE content. Calculated parental melts for garnets with humped REE patterns suggest dissolution of former Cpx and depression means Cpx and garnets extraction. Clinopyroxenes from Ary-Mastakh fields show less inclined REE patterns with HMREE troughs and an increase of incompatible elements. Clinopyroxenes from Kuranakh field show flatter spoon-like REE patterns and peaks in Ba, U, Pb and Sr, similar to those in ophiolitic harzburgites. The PT diagrams for the mantle sections show high temperature gradients in the uppermost SCLM accompanied by an increase of P-Fe#Ol upward and slightly reduced thickness of the mantle keel of the Siberian craton, resulting from the influence of the Permian–Triassic superplume, but with no signs of delamination.

Neonatal lethal dwarfism with distinct skeletal malformations - a separate entity?

Energy Technology Data Exchange (ETDEWEB)

Rosendahl, K.; Maurseth, K.; Olsen, Oe.E. [Dept. of Paediatric Radiology, Haukeland University Hospital, Bergen (Norway); Halvorsen, O.J. [Dept. of Pathology, Haukeland University Hospital, Bergen (Norway); Gjelland, K. [Dept. of Gynaecology, Haukeland University Hospital, Bergen (Norway); Engebretsen, L. [Dept. of Genetics, Haukeland University Hospital, Bergen (Norway)

2001-09-01

We describe a case of neonatal lethal dwarfism characterised by short trunk, short, stick-like tubular bones, deficient ossification of the axial skeleton and broad, sclerotic horizontal ribs. Two similar cases have previously been reported as examples of the Neu-Laxova syndrome. However, the radiological findings of the Neu-Laxova syndrome, as reported in 16 out of 40 documented cases, show a heterogeneous pattern of minor features, which differ distinctively from those found in the previous two cases and by us. A literature research did not reveal similar cases, and we therefore suggest that our case, together with the two previous cases, may represent a new distinctive form of neonatal lethal dwarfism. (orig.)

Neonatal lethal dwarfism with distinct skeletal malformations - a separate entity?

International Nuclear Information System (INIS)

Rosendahl, K.; Maurseth, K.; Olsen, Oe.E.; Halvorsen, O.J.; Gjelland, K.; Engebretsen, L.

2001-01-01

We describe a case of neonatal lethal dwarfism characterised by short trunk, short, stick-like tubular bones, deficient ossification of the axial skeleton and broad, sclerotic horizontal ribs. Two similar cases have previously been reported as examples of the Neu-Laxova syndrome. However, the radiological findings of the Neu-Laxova syndrome, as reported in 16 out of 40 documented cases, show a heterogeneous pattern of minor features, which differ distinctively from those found in the previous two cases and by us. A literature research did not reveal similar cases, and we therefore suggest that our case, together with the two previous cases, may represent a new distinctive form of neonatal lethal dwarfism. (orig.)

MicroRNA profiling reveals distinct signatures in B cell chronic lymphocytic leukemias

Science.gov (United States)

Calin, George Adrian; Liu, Chang-Gong; Sevignani, Cinzia; Ferracin, Manuela; Felli, Nadia; Dumitru, Calin Dan; Shimizu, Masayoshi; Cimmino, Amelia; Zupo, Simona; Dono, Mariella; Dell'Aquila, Marie L.; Alder, Hansjuerg; Rassenti, Laura; Kipps, Thomas J.; Bullrich, Florencia; Negrini, Massimo; Croce, Carlo M.

2004-01-01

Little is known about the expression levels or function of micro-RNAs (miRNAs) in normal and neoplastic cells, although it is becoming clear that miRNAs play important roles in the regulation of gene expression during development [Ambros, V. (2003) Cell 113, 673–676; McManus, M. T. (2003) Semin. Cancer Biol. 13, 253–258]. We now report the genomewide expression profiling of miRNAs in human B cell chronic lymphocytic leukemia (CLL) by using a microarray containing hundreds of human precursor and mature miRNA oligonucleotide probes. This approach allowed us to identify significant differences in miRNome expression between CLL samples and normal CD5+ B cells; data were confirmed by Northern blot analyses and real-time RT-PCR. At least two distinct clusters of CLL samples can be identified that were associated with the presence or absence of Zap-70 expression, a predictor of early disease progression. Two miRNA signatures were associated with the presence or absence of mutations in the expressed Ig variableregion genes or with deletions at 13q14, respectively. These data suggest that miRNA expression patterns have relevance to the biological and clinical behavior of this leukemia. PMID:15284443

Comparative genomic analysis of the Lipase3 gene family in five plant species reveals distinct evolutionary origins.

Science.gov (United States)

Wang, Dan; Zhang, Lin; Hu, JunFeng; Gao, Dianshuai; Liu, Xin; Sha, Yan

2018-04-01

Lipases are physiologically important and ubiquitous enzymes that share a conserved domain and are classified into eight different families based on their amino acid sequences and fundamental biological properties. The Lipase3 family of lipases was reported to possess a canonical fold typical of α/β hydrolases and a typical catalytic triad, suggesting a distinct evolutionary origin for this family. Genes in the Lipase3 family do not have the same functions, but maintain the conserved Lipase3 domain. There have been extensive studies of Lipase3 structures and functions, but little is known about their evolutionary histories. In this study, all lipases within five plant species were identified, and their phylogenetic relationships and genetic properties were analyzed and used to group them into distinct evolutionary families. Each identified lipase family contained at least one dicot and monocot Lipase3 protein, indicating that the gene family was established before the split of dicots and monocots. Similar intron/exon numbers and predicted protein sequence lengths were found within individual groups. Twenty-four tandem Lipase3 gene duplications were identified, implying that the distinctive function of Lipase3 genes appears to be a consequence of translocation and neofunctionalization after gene duplication. The functional genes EDS1, PAD4, and SAG101 that are reportedly involved in pathogen response were all located in the same group. The nucleotide diversity (Dxy) and the ratio of nonsynonymous to synonymous nucleotide substitutions rates (Ka/Ks) of the three genes were significantly greater than the average across the genomes. We further observed evidence for selection maintaining diversity on three genes in the Toll-Interleukin-1 receptor type of nucleotide binding/leucine-rich repeat immune receptor (TIR-NBS LRR) immunity-response signaling pathway, indicating that they could be vulnerable to pathogen effectors.

Characterization of Trichome-Expressed BAHD Acyltransferases in Petunia axillaris Reveals Distinct Acylsugar Assembly Mechanisms within the Solanaceae.

Science.gov (United States)

Nadakuduti, Satya Swathi; Uebler, Joseph B; Liu, Xiaoxiao; Jones, A Daniel; Barry, Cornelius S

2017-09-01

Acylsugars are synthesized in the glandular trichomes of the Solanaceae family and are implicated in protection against abiotic and biotic stress. Acylsugars are composed of either sucrose or glucose esterified with varying numbers of acyl chains of differing length. In tomato ( Solanum lycopersicum ), acylsugar assembly requires four acylsugar acyltransferases (ASATs) of the BAHD superfamily. Tomato ASATs catalyze the sequential esterification of acyl-coenzyme A thioesters to the R4, R3, R3', and R2 positions of sucrose, yielding a tetra-acylsucrose. Petunia spp. synthesize acylsugars that are structurally distinct from those of tomato. To explore the mechanisms underlying this chemical diversity, a Petunia axillaris transcriptome was mined for trichome preferentially expressed BAHDs. A combination of phylogenetic analyses, gene silencing, and biochemical analyses coupled with structural elucidation of metabolites revealed that acylsugar assembly is not conserved between tomato and petunia. In P. axillaris , tetra-acylsucrose assembly occurs through the action of four ASATs, which catalyze sequential addition of acyl groups to the R2, R4, R3, and R6 positions. Notably, in P. axillaris , PaxASAT1 and PaxASAT4 catalyze the acylation of the R2 and R6 positions of sucrose, respectively, and no clear orthologs exist in tomato. Similarly, petunia acylsugars lack an acyl group at the R3' position, and congruently, an ortholog of SlASAT3, which catalyzes acylation at the R3' position in tomato, is absent in P. axillaris Furthermore, where putative orthologous relationships of ASATs are predicted between tomato and petunia, these are not supported by biochemical assays. Overall, these data demonstrate the considerable evolutionary plasticity of acylsugar biosynthesis. © 2017 American Society of Plant Biologists. All Rights Reserved.

Examining the Distinctiveness and the Socio-Emotional Correlates of Anxious-Withdrawal and Unsociability during Early Adolescence in Finland

Science.gov (United States)

Ojanen, Tiina; Findley-Van Nostrand, Danielle; Bowker, Julie C.; Markovic, Andrea

2017-01-01

This study examined the distinctiveness of and the correlates associated with anxious-withdrawal and unsociability during early adolescence in Finland (N = 384; 12-14 years; 53% girls). As expected, confirmatory factor analyses revealed that anxious-withdrawal and unsociability were distinct and moderately positively correlated constructs. Only…

Quantum Distinction: Quantum Distinctiones!

OpenAIRE

Zeps, Dainis

2009-01-01

10 pages; How many distinctions, in Latin, quantum distinctiones. We suggest approach of anthropic principle based on anthropic reference system which should be applied equally both in theoretical physics and in mathematics. We come to principle that within reference system of life subject of mathematics (that of thinking) should be equated with subject of physics (that of nature). For this reason we enter notions of series of distinctions, quantum distinction, and argue that quantum distinct...

Transcranial magnetic stimulation reveals two functionally distinct stages of motor cortex involvement during perception of emotional body language

NARCIS (Netherlands)

Borgomaneri, Sara; Gazzola, Valeria; Avenanti, Alessio

Studies indicate that perceiving emotional body language recruits fronto-parietal regions involved in action execution. However, the nature of such motor activation is unclear. Using transcranial magnetic stimulation (TMS) we provide correlational and causative evidence of two distinct stages of

Transcranial magnetic stimulation reveals two functionally distinct stages of motor cortex involvement during perception of emotional body language

NARCIS (Netherlands)

Borgomaneri, S.; Gazzola, V.; Avenanti, A.

2015-01-01

Studies indicate that perceiving emotional body language recruits fronto-parietal regions involved in action execution. However, the nature of such motor activation is unclear. Using transcranial magnetic stimulation (TMS) we provide correlational and causative evidence of two distinct stages of

Comprehensive benchmarking reveals H2BK20 acetylation as a distinctive signature of cell-state-specific enhancers and promoters.

Science.gov (United States)

Kumar, Vibhor; Rayan, Nirmala Arul; Muratani, Masafumi; Lim, Stefan; Elanggovan, Bavani; Xin, Lixia; Lu, Tess; Makhija, Harshyaa; Poschmann, Jeremie; Lufkin, Thomas; Ng, Huck Hui; Prabhakar, Shyam

2016-05-01

Although over 35 different histone acetylation marks have been described, the overwhelming majority of regulatory genomics studies focus exclusively on H3K27ac and H3K9ac. In order to identify novel epigenomic traits of regulatory elements, we constructed a benchmark set of validated enhancers by performing 140 enhancer assays in human T cells. We tested 40 chromatin signatures on this unbiased enhancer set and identified H2BK20ac, a little-studied histone modification, as the most predictive mark of active enhancers. Notably, we detected a novel class of functionally distinct enhancers enriched in H2BK20ac but lacking H3K27ac, which was present in all examined cell lines and also in embryonic forebrain tissue. H2BK20ac was also unique in highlighting cell-type-specific promoters. In contrast, other acetylation marks were present in all active promoters, regardless of cell-type specificity. In stimulated microglial cells, H2BK20ac was more correlated with cell-state-specific expression changes than H3K27ac, with TGF-beta signaling decoupling the two acetylation marks at a subset of regulatory elements. In summary, our study reveals a previously unknown connection between histone acetylation and cell-type-specific gene regulation and indicates that H2BK20ac profiling can be used to uncover new dimensions of gene regulation. © 2016 Kumar et al.; Published by Cold Spring Harbor Laboratory Press.

Comparative linkage meta-analysis reveals regionally-distinct, disparate genetic architectures: application to bipolar disorder and schizophrenia.

Directory of Open Access Journals (Sweden)

Brady Tang

2011-04-01

Full Text Available New high-throughput, population-based methods and next-generation sequencing capabilities hold great promise in the quest for common and rare variant discovery and in the search for "missing heritability." However, the optimal analytic strategies for approaching such data are still actively debated, representing the latest rate-limiting step in genetic progress. Since it is likely a majority of common variants of modest effect have been identified through the application of tagSNP-based microarray platforms (i.e., GWAS, alternative approaches robust to detection of low-frequency (1-5% MAF and rare (<1% variants are of great importance. Of direct relevance, we have available an accumulated wealth of linkage data collected through traditional genetic methods over several decades, the full value of which has not been exhausted. To that end, we compare results from two different linkage meta-analysis methods--GSMA and MSP--applied to the same set of 13 bipolar disorder and 16 schizophrenia GWLS datasets. Interestingly, we find that the two methods implicate distinct, largely non-overlapping, genomic regions. Furthermore, based on the statistical methods themselves and our contextualization of these results within the larger genetic literatures, our findings suggest, for each disorder, distinct genetic architectures may reside within disparate genomic regions. Thus, comparative linkage meta-analysis (CLMA may be used to optimize low-frequency and rare variant discovery in the modern genomic era.

Comparison of mitochondrial and nucleolar RNase MRP reveals identical RNA components with distinct enzymatic activities and protein components.

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Lu, Qiaosheng; Wierzbicki, Sara; Krasilnikov, Andrey S; Schmitt, Mark E

2010-03-01

RNase MRP is a ribonucleoprotein endoribonuclease found in three cellular locations where distinct substrates are processed: the mitochondria, the nucleolus, and the cytoplasm. Cytoplasmic RNase MRP is the nucleolar enzyme that is transiently relocalized during mitosis. Nucleolar RNase MRP (NuMRP) was purified to homogeneity, and we extensively purified the mitochondrial RNase MRP (MtMRP) to a single RNA component identical to the NuMRP RNA. Although the protein components of the NuMRP were identified by mass spectrometry successfully, none of the known NuMRP proteins were found in the MtMRP preparation. Only trace amounts of the core NuMRP protein, Pop4, were detected in MtMRP by Western blot. In vitro activity of the two enzymes was compared. MtMRP cleaved only mitochondrial ORI5 substrate, while NuMRP cleaved all three substrates. However, the NuMRP enzyme cleaved the ORI5 substrate at sites different than the MtMRP enzyme. In addition, enzymatic differences in preferred ionic strength confirm these enzymes as distinct entities. Magnesium was found to be essential to both enzymes. We tested a number of reported inhibitors including puromycin, pentamidine, lithium, and pAp. Puromycin inhibition suggested that it binds directly to the MRP RNA, reaffirming the role of the RNA component in catalysis. In conclusion, our study confirms that the NuMRP and MtMRP enzymes are distinct entities with differing activities and protein components but a common RNA subunit, suggesting that the RNA must be playing a crucial role in catalytic activity.

Climate-Induced Mortality of Siberian Pine and Fir in the Lake Baikal Watershed, Siberia

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Kharuk, Viacheslav I.; Im, Sergei T.; Petrova, IIya A.; Golyukov, Alexei S.; Ranson, Kenneth J.; Yagunov, Mikhail N.

2016-01-01

Siberian pine (Pinus sibirica) and fir (Abies sibirica) (so called "dark needle conifers", DNC) showed decreased radial growth increment within the Lake Baikal watershed since the 1980s with increasing mortality recorded since the year 2000. Tree ring width was strongly correlated with vapor pressure deficit, aridity and root zone moisture. Water stress from droughts made trees more susceptible to insect attacks causing mortality in about 10% of DNC stands within the Lake Baikal watershed. Within Siberia DNC mortality increased in the southern part of the DNC range. Biogeographically, tree mortality was located within the DNC - forest-steppes transition. Tree mortality was significantly correlated with drought and soil moisture anomalies. Within the interior of the DNC range mortality occurred within relief features with high water stress risk (i.e., steep convex south facing slopes with shallow well-drained soils). In general, DNC mortality in Siberia was induced by increased aridity and severe drought (inciting factors) in synergy with biotic attacks (contributing factor). In future climate scenarios with predicted increase in aridity DNC could be eliminated from the southern part of its current range and will be replaced by drought-resistant conifers and broadleaf species (e.g., Larix sibirica, Pinus silvestris, and Betula pubescence).

Transcriptomic analysis of Siberian ginseng (Eleutherococcus senticosus) to discover genes involved in saponin biosynthesis.

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Hwang, Hwan-Su; Lee, Hyoshin; Choi, Yong Eui

2015-03-14

Eleutherococcus senticosus, Siberian ginseng, is a highly valued woody medicinal plant belonging to the family Araliaceae. E. senticosus produces a rich variety of saponins such as oleanane-type, noroleanane-type, 29-hydroxyoleanan-type, and lupane-type saponins. Genomic or transcriptomic approaches have not been used to investigate the saponin biosynthetic pathway in this plant. In this study, de novo sequencing was performed to select candidate genes involved in the saponin biosynthetic pathway. A half-plate 454 pyrosequencing run produced 627,923 high-quality reads with an average sequence length of 422 bases. De novo assembly generated 72,811 unique sequences, including 15,217 contigs and 57,594 singletons. Approximately 48,300 (66.3%) unique sequences were annotated using BLAST similarity searches. All of the mevalonate pathway genes for saponin biosynthesis starting from acetyl-CoA were isolated. Moreover, 206 reads of cytochrome P450 (CYP) and 145 reads of uridine diphosphate glycosyltransferase (UGT) sequences were isolated. Based on methyl jasmonate (MeJA) treatment and real-time PCR (qPCR) analysis, 3 CYPs and 3 UGTs were finally selected as candidate genes involved in the saponin biosynthetic pathway. The identified sequences associated with saponin biosynthesis will facilitate the study of the functional genomics of saponin biosynthesis and genetic engineering of E. senticosus.

Comparative genome analyses reveal distinct structure in the saltwater crocodile MHC.

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Weerachai Jaratlerdsiri

Full Text Available The major histocompatibility complex (MHC is a dynamic genome region with an essential role in the adaptive immunity of vertebrates, especially antigen presentation. The MHC is generally divided into subregions (classes I, II and III containing genes of similar function across species, but with different gene number and organisation. Crocodylia (crocodilians are widely distributed and represent an evolutionary distinct group among higher vertebrates, but the genomic organisation of MHC within this lineage has been largely unexplored. Here, we studied the MHC region of the saltwater crocodile (Crocodylus porosus and compared it with that of other taxa. We characterised genomic clusters encompassing MHC class I and class II genes in the saltwater crocodile based on sequencing of bacterial artificial chromosomes. Six gene clusters spanning ∼452 kb were identified to contain nine MHC class I genes, six MHC class II genes, three TAP genes, and a TRIM gene. These MHC class I and class II genes were in separate scaffold regions and were greater in length (2-6 times longer than their counterparts in well-studied fowl B loci, suggesting that the compaction of avian MHC occurred after the crocodilian-avian split. Comparative analyses between the saltwater crocodile MHC and that from the alligator and gharial showed large syntenic areas (>80% identity with similar gene order. Comparisons with other vertebrates showed that the saltwater crocodile had MHC class I genes located along with TAP, consistent with birds studied. Linkage between MHC class I and TRIM39 observed in the saltwater crocodile resembled MHC in eutherians compared, but absent in avian MHC, suggesting that the saltwater crocodile MHC appears to have gene organisation intermediate between these two lineages. These observations suggest that the structure of the saltwater crocodile MHC, and other crocodilians, can help determine the MHC that was present in the ancestors of archosaurs.

Distinctive anatomical and physiological features of migraine aura revealed by 18 years of recording

DEFF Research Database (Denmark)

Hansen, Jakob Møller; Baca, Serapio Michael; Vanvalkenburgh, Paul

2013-01-01

insight into basic aura mechanisms. An individual made detailed drawings of his visual percept of migraine aura in real time during more than 1000 attacks of migraine aura without headache over 18 years. Drawings were made in a consistent fashion documenting the shape and location of the aura wavefront...... originated centrally (within 10° eccentricity), but there were also other distinct sites of initiation in the visual field. Auras beginning centrally preferentially propagated first through lower nasal field (69-77% of all auras) before travelling to upper and temporal fields, on both sides. Some auras...... propagated from peripheral to central regions of the visual field-these typically followed the reverse path of those travelling in the opposite direction. The mean velocity of the perceived visual phenomenon did not differ between attacks starting peripherally and centrally. The estimated speed...

Can we explain vagrancy in Europe with the autumn migration phenology of Siberian warbler species in East Russia?

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Bozó László

2016-06-01

Full Text Available We examined the autumn migration phenology of nine Siberian breeding songbirds: Thick-billed Warbler (Iduna aedon, Black-browed Reed Warbler (Acrocephalus bistrigiceps, Pallas’s Grasshopper Warbler (Locustella certhiola, Lanceolated Warbler (L. lanceolata, Yellow-browed Warbler (Phylloscopus inornatus, Arctic Warbler (Ph. borealis, Dusky Warbler (Ph. fuscatus, Radde’s Warbler (Ph. schwarzi, Two-barred Warbler (Ph. plumbeitarsus and compared the migration dynamic characteristics with their European occurrence time. The study was carried out within the Amur Bird Project in the Russian Far East along the river Amur at Muraviovka Park between 2011 and 2014. The birds were caught with mistnets and ringed with individually numbered rings. For the characterization of the migration, we used timing, the intervals and the peaks of the migration, the percentage of the recaptures and the average time between the first and the last captures. The timing of migration in the studied species differed in the timing, the intervals (30-67 days and the migration peaks (14 August - 17 September.

A Cross-Species Analysis in Pancreatic Neuroendocrine Tumors Reveals Molecular Subtypes with Distinctive Clinical, Metastatic, Developmental, and Metabolic Characteristics

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Sadanandam, Anguraj; Wullschleger, Stephan; Lyssiotis, Costas A.; Grötzinger, Carsten; Barbi, Stefano; Bersani, Samantha; Körner, Jan; Wafy, Ismael; Mafficini, Andrea; Lawlor, Rita T.; Simbolo, Michele; Asara, John M.; Bläker, Hendrik; Cantley, Lewis C.; Wiedenmann, Bertram; Scarpa, Aldo; Hanahan, Douglas

2016-01-01

Seeking to assess the representative and instructive value of an engineered mouse model of pancreatic neuroendocrine tumors (PanNET) for its cognate human cancer, we profiled and compared mRNA and miRNA transcriptomes of tumors from both. Mouse PanNET tumors could be classified into two distinctive subtypes, well-differentiated islet/insulinoma tumors (IT) and poorly differentiated tumors associated with liver metastases, dubbed metastasis-like primary (MLP). Human PanNETs were independently classified into these same two subtypes, along with a third, specific gene mutation–enriched subtype. The MLP subtypes in human and mouse were similar to liver metastases in terms of miRNA and mRNA transcriptome profiles and signature genes. The human/mouse MLP subtypes also similarly expressed genes known to regulate early pancreas development, whereas the IT subtypes expressed genes characteristic of mature islet cells, suggesting different tumorigenesis pathways. In addition, these subtypes exhibit distinct metabolic profiles marked by differential pyruvate metabolism, substantiating the significance of their separate identities. SIGNIFICANCE This study involves a comprehensive cross-species integrated analysis of multi-omics profiles and histology to stratify PanNETs into subtypes with distinctive characteristics. We provide support for the RIP1-TAG2 mouse model as representative of its cognate human cancer with prospects to better understand PanNET heterogeneity and consider future applications of personalized cancer therapy. PMID:26446169

Physical versus psychological social stress in male rats reveals distinct cardiovascular, inflammatory and behavioral consequences

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Padi, Akhila R.; Moffitt, Casey M.; Wilson, L. Britt; Wood, Christopher S.; Wood, Susan K.

2017-01-01

Repeated exposure to social stress can precipitate the development of psychosocial disorders including depression and comorbid cardiovascular disease. While a major component of social stress often encompasses physical interactions, purely psychological stressors (i.e. witnessing a traumatic event) also fall under the scope of social stress. The current study determined whether the acute stress response and susceptibility to stress-related consequences differed based on whether the stressor consisted of physical versus purely psychological social stress. Using a modified resident-intruder paradigm, male rats were either directly exposed to repeated social defeat stress (intruder) or witnessed a male rat being defeated. Cardiovascular parameters, behavioral anhedonia, and inflammatory cytokines in plasma and the stress-sensitive locus coeruleus were compared between intruder, witness, and control rats. Surprisingly intruders and witnesses exhibited nearly identical increases in mean arterial pressure and heart rate during acute and repeated stress exposures, yet only intruders exhibited stress-induced arrhythmias. Furthermore, re-exposure to the stress environment in the absence of the resident produced robust pressor and tachycardic responses in both stress conditions indicating the robust and enduring nature of social stress. In contrast, the long-term consequences of these stressors were distinct. Intruders were characterized by enhanced inflammatory sensitivity in plasma, while witnesses were characterized by the emergence of depressive-like anhedonia, transient increases in systolic blood pressure and plasma levels of tissue inhibitor of metalloproteinase. The current study highlights that while the acute cardiovascular responses to stress were identical between intruders and witnesses, these stressors produced distinct differences in the enduring consequences to stress, suggesting that witness stress may be more likely to produce long-term cardiovascular

[Humanities as a means of survival: the testimony of a Siberian prisoner of war in the First World War].

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Inić, Suzana; Fatović-Ferenčić, Stella; Kujundžić, Nikola

2015-11-01

This article looks into the autobiography of the Croatian chemist and pharmacognosist Antun Vrgoč (1881-1949) entitled My Memories of the World War 1914-1920 and published in Zagreb in 1937. The author was captured in October 1914 and deported to Siberia, where he remained prisoner of war until 1920. Since there are few memoirs describing the life of Siberian prisoners during the First World War, this work is a precious testimony about the attitude towards the prisoners of war, human relations, and the survival of an AustroHungarian army officer. The book shows a striking lack of civilian or military hostility towards the prisoners and the respect of the Geneva Convention. Antun Vrgoč adopted the culture, customs and language of his formal enemies, took part in their civilian life, and taught at their university. His cathartic experience of survival includes a clear message about the absurdity of war.

[Multiplicity of B microchromosomes in a Siberian population of mice Apodemus peninsulae (2n = 48 + 4-30 B chromosomes)].

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Borisov, Iu M; Afanas'ev, A G; Lebedev, T T; Bochkarev, M N

2010-06-01

Differentiation of four Siberian populations of East-Asian (Korean) field mice (Apodemus peninsulae) inhabiting the basin of the mid-stream of the Yenisei River was carried out according to the variants of the B chromosome system. A multiplicity of B microchromosomes (from 4 to 30) was found for the first time in all 26 mice from the left shore of the Yenisei River in the mid-stream area. All of them probably belong to a population with B microchromosomes. It is likely that in this population further reorganization of B microchromosomes into B macrochromosomes typical of this species does not occur. Two mice from this population had a large number of B chromosomes (26) earlier not observed in this species. In one mouse, the modal number of B microchromosomes was 30. This is a new maximum number of B chromosomes in this mouse species.

EDITORIAL: Siberia Integrated Regional Study: multidisciplinary investigations of the dynamic relationship between the Siberian environment and global climate change

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Gordov, E. P.; Vaganov, E. A.

2010-03-01

This is an editorial overview of the Siberia Integrated Regional Study (SIRS), which is a large-scale investigation of ongoing and future environmental change in Siberia and its relationship to global processes, approaches, existing challenges and future direction. Introduction The SIRS is a mega-project within the Northern Eurasia Earth Science Partnership Initiative (NEESPI), which coordinates interdisciplinary, national and international activities in Northern Eurasia that follow the Earth System Science Program (ESSP) approach. Under the direction of the International Geosphere-Biosphere Program (IGBP), SIRS is one of the Integrated Regional Studies (IRS) that aims to investigate environmental change in Siberia under the current environment of global change, and the potential impact on Earth system dynamics [1]. The regions of interest are those that may function as 'choke or switch points' for the global Earth system, where changes in regional biophysical, biogeochemical and anthropogenic components may have significant consequences for the Earth system at the global scale. Siberia is a large and significant region that may compel change [2]. Regional consequences of global warming (e.g. anomalous increases in cold season temperatures) have already been documented for Siberia [3]. This result is also supported by climate modeling results for the 20th-22nd centuries [4]. Future climatic change threatens Siberia with the shift of permafrost boundaries northward, dramatic changes in land cover (redistribution among boreal forest, wetlands, tundra, and steppe zones often precipitated by fire regime change) and the entire hydrological regime of the territory [5-8]. These processes feed back to and influence climate dynamics through the exchange of energy, water, greenhouse gases and aerosols [9]. Even though there have been a handful of national and international projects focused on the Siberian environment, scientists have minimal knowledge about the processes

History and Historians in the Soviet Political and Ideological Structure in 1930s – early 1940s (case study: the Siberian Region

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Dmitry V. Khaminov

2014-12-01

Full Text Available In paper deals with the issues of a place and a role of historical knowledge and historians as a special professional community (university professors, researchers and students of the history departments in the political and ideological structure of the Soviet state in the 1930s – early 1940s. The article restores politics of Communist Party and Soviet government in relation to historians on the example of a unique Siberian small region. The Author made an attempt, on the basis of party and government documents as well as archive materials, some of which were for the first time introduced in scientific circles, give a balanced assessment of these processes in the conditions of the most tragic and controversial periods in the Russian history.

Healthcare- and Community-Associated Methicillin-Resistant Staphylococcus aureus (MRSA) and Fatal Pneumonia with Pediatric Deaths in Krasnoyarsk, Siberian Russia: Unique MRSA's Multiple Virulence Factors, Genome, and Stepwise Evolution

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Khokhlova, Olga E.; Hung, Wei-Chun; Wan, Tsai-Wen; Iwao, Yasuhisa; Takano, Tomomi; Higuchi, Wataru; Yachenko, Svetlana V.; Teplyakova, Olga V.; Kamshilova, Vera V.; Kotlovsky, Yuri V.; Nishiyama, Akihito; Reva, Ivan V.; Sidorenko, Sergey V.; Peryanova, Olga V.; Reva, Galina V.; Teng, Lee-Jene; Salmina, Alla B.; Yamamoto, Tatsuo

2015-01-01

Methicillin-resistant Staphylococcus aureus (MRSA) is a common multidrug-resistant (MDR) pathogen. We herein discussed MRSA and its infections in Krasnoyarsk, Siberian Russia between 2007 and 2011. The incidence of MRSA in 3,662 subjects was 22.0% and 2.9% for healthcare- and community-associated MRSA (HA- and CA-MRSA), respectively. The 15-day mortality rates for MRSA hospital- and community-acquired pneumonia (HAP and CAP) were 6.5% and 50%, respectively. MRSA CAP cases included pediatric deaths; of the MRSA pneumonia episodes available, ≥27.3% were associated with bacteremia. Most cases of HA-MRSA examined exhibited ST239/spa3(t037)/SCCmecIII.1.1.2 (designated as ST239Kras), while all CA-MRSA cases examined were ST8/spa1(t008)/SCCmecIV.3.1.1(IVc) (designated as ST8Kras). ST239Kras and ST8Kras strongly expressed cytolytic peptide (phenol-soluble modulin α, PSMα; and δ-hemolysin, Hld) genes, similar to CA-MRSA. ST239Kras pneumonia may have been attributed to a unique set of multiple virulence factors (MVFs): toxic shock syndrome toxin-1 (TSST-1), elevated PSMα/Hld expression, α-hemolysin, the staphylococcal enterotoxin SEK/SEQ, the immune evasion factor SCIN/SAK, and collagen adhesin. Regarding ST8Kras, SEA was included in MVFs, some of which were common to ST239Kras. The ST239Kras (strain OC3) genome contained: a completely unique phage, φSa7-like (W), with no att repetition; S. aureus pathogenicity island SaPI2R, the first TSST-1 gene-positive (tst+) SaPI in the ST239 lineage; and a super copy of IS256 (≥22 copies/genome). ST239Kras carried the Brazilian SCCmecIII.1.1.2 and United Kingdom-type tst. ST239Kras and ST8Kras were MDR, with the same levofloxacin resistance mutations; small, but transmissible chloramphenicol resistance plasmids spread widely enough to not be ignored. These results suggest that novel MDR and MVF+ HA- and CA-MRSA (ST239Kras and ST8Kras) emerged in Siberian Russia (Krasnoyarsk) associated with fatal pneumonia, and also with ST

Dissolved inorganic carbon, pH, alkalinity, temperature, salinity and other variables collected from discrete sample and profile observations using Alkalinity titrator, CTD and other instruments from JAKOV SMIRNITSKIY in the Beaufort Sea, East Siberian Sea and others from 2008-08-15 to 2008-09-16 (NODC Accession 0108368)

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National Oceanic and Atmospheric Administration, Department of Commerce — NCEI Accession 0108368 includes chemical, discrete sample, physical and profile data collected from JAKOV SMIRNITSKIY in the Beaufort Sea, East Siberian Sea, Kara...

Comparative Plasmodium gene overexpression reveals distinct perturbation of sporozoite transmission by profilin.

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Sato, Yuko; Hliscs, Marion; Dunst, Josefine; Goosmann, Christian; Brinkmann, Volker; Montagna, Georgina N; Matuschewski, Kai

2016-07-15

Plasmodium relies on actin-based motility to migrate from the site of infection and invade target cells. Using a substrate-dependent gliding locomotion, sporozoites are able to move at fast speed (1-3 μm/s). This motility relies on a minimal set of actin regulatory proteins and occurs in the absence of detectable filamentous actin (F-actin). Here we report an overexpression strategy to investigate whether perturbations of F-actin steady-state levels affect gliding locomotion and host invasion. We selected two vital Plasmodium berghei G-actin-binding proteins, C-CAP and profilin, in combination with three stage-specific promoters and mapped the phenotypes afforded by overexpression in all three extracellular motile stages. We show that in merozoites and ookinetes, additional expression does not impair life cycle progression. In marked contrast, overexpression of C-CAP and profilin in sporozoites impairs circular gliding motility and salivary gland invasion. The propensity for productive motility correlates with actin accumulation at the parasite tip, as revealed by combinations of an actin-stabilizing drug and transgenic parasites. Strong expression of profilin, but not C-CAP, resulted in complete life cycle arrest. Comparative overexpression is an alternative experimental genetic strategy to study essential genes and reveals effects of regulatory imbalances that are not uncovered from deletion-mutant phenotyping. © 2016 Sato et al. This article is distributed by The American Society for Cell Biology under license from the author(s). Two months after publication it is available to the public under an Attribution–Noncommercial–Share Alike 3.0 Unported Creative Commons License (http://creativecommons.org/licenses/by-nc-sa/3.0).

Dim light at night disrupts the short-day response in Siberian hamsters.

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Ikeno, Tomoko; Weil, Zachary M; Nelson, Randy J

2014-02-01

Photoperiodic regulation of physiology, morphology, and behavior is crucial for many animals to survive seasonally variable conditions unfavorable for reproduction and survival. The photoperiodic response in mammals is mediated by nocturnal secretion of melatonin under the control of a circadian clock. However, artificial light at night caused by recent urbanization may disrupt the circadian clock, as well as the photoperiodic response by blunting melatonin secretion. Here we examined the effect of dim light at night (dLAN) (5lux of light during the dark phase) on locomotor activity rhythms and short-day regulation of reproduction, body mass, pelage properties, and immune responses of male Siberian hamsters. Short-day animals reduced gonadal and body mass, decreased spermatid nuclei and sperm numbers, molted to a whiter pelage, and increased pelage density compared to long-day animals. However, animals that experienced short days with dLAN did not show these short-day responses. Moreover, short-day specific immune responses were altered in dLAN conditions. The nocturnal activity pattern was blunted in dLAN hamsters, consistent with the observation that dLAN changed expression of the circadian clock gene, Period1. In addition, we demonstrated that expression levels of genes implicated in the photoperiodic response, Mel-1a melatonin receptor, Eyes absent 3, thyroid stimulating hormone receptor, gonadotropin-releasing hormone, and gonadotropin-inhibitory hormone, were higher in dLAN animals than those in short-day animals. These results suggest that dLAN disturbs the circadian clock function and affects the molecular mechanisms of the photoperiodic response. Copyright © 2013 Elsevier Inc. All rights reserved.

Magmatism evolution in the Nori'lsk region (Siberian trap province)

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Krivolutskaya, Nadezhda

2010-05-01

The NW Siberian trap province is very important for our understanding of evolution of huge magmatic system (T1) and origin unique Pt-Cu-Ni deposits. To solve these genetic problems (including correlation between effusive and intrusive rocks) it is necessary to get accurate information about magmatism migration in space and in time inside different tectonic structures in the Noril'sk region. Thed latter takes outstanding place on the Siberian platform due to its geological features. It consists of two main areas covered by volcanic rocks: I. Kharaelakhsky trough (on West) and II. plateau Putorana (on East) are subdivided by carbonate-terrigenouse rocks (C-P2) of Khantaisko-Rybninsky swell . These two zones differ one from another by thickness of basalts and their composition.The fist zone extents along the Khatanga fault and contains all suits, including three lowest ones - ivakinsky (Iv), syverminsky (Sv), gudchikhinsky (Gd). II zone essentially consists of the middle and upper suits - hakanchansky (Hk), tuklonsky (Tk), nadezhdinsky (Nd), morongovsky (Mr), mokulaevsky (Mk), kharaekakhsky (Kh), kumginsky (Km) and samoedsky (Sm). Usually it is constructed the complete section of the Noril'sk volcanites from rocks of two zones. But every suit has its own areal extent., which to contour it not so easy because volcanic rocks represent very similar tholeiitic basalts ( in term of texture and petrochemistry). Their differentiation is just possible using rare elements and isotopes contents in the rocks [1]. We have studied a lot of basalt sections based on their outcrops and cores of drill holes (4 570 m) and intrusive bodies graduated in mineralization (internal structure, geochemistry, mineralogy, isotopes composition). According new data areoles of the lowers and the upper suits separate in space. The thicknesses Iv and Sv suits (TiO2=2-4 mas. %; Gg/Yb = 2.2.) decreases synchronously from NW Kharaelakh and the towards Putorana at 30%. Gd suit (TiO2=1-2 mas.% and Gd

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states.

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Kevin A Wilkinson

2008-04-01

Full Text Available Replication and pathogenesis of the human immunodeficiency virus (HIV is tightly linked to the structure of its RNA genome, but genome structure in infectious virions is poorly understood. We invent high-throughput SHAPE (selective 2'-hydroxyl acylation analyzed by primer extension technology, which uses many of the same tools as DNA sequencing, to quantify RNA backbone flexibility at single-nucleotide resolution and from which robust structural information can be immediately derived. We analyze the structure of HIV-1 genomic RNA in four biologically instructive states, including the authentic viral genome inside native particles. Remarkably, given the large number of plausible local structures, the first 10% of the HIV-1 genome exists in a single, predominant conformation in all four states. We also discover that noncoding regions functioning in a regulatory role have significantly lower (p-value < 0.0001 SHAPE reactivities, and hence more structure, than do viral coding regions that function as the template for protein synthesis. By directly monitoring protein binding inside virions, we identify the RNA recognition motif for the viral nucleocapsid protein. Seven structurally homologous binding sites occur in a well-defined domain in the genome, consistent with a role in directing specific packaging of genomic RNA into nascent virions. In addition, we identify two distinct motifs that are targets for the duplex destabilizing activity of this same protein. The nucleocapsid protein destabilizes local HIV-1 RNA structure in ways likely to facilitate initial movement both of the retroviral reverse transcriptase from its tRNA primer and of the ribosome in coding regions. Each of the three nucleocapsid interaction motifs falls in a specific genome domain, indicating that local protein interactions can be organized by the long-range architecture of an RNA. High-throughput SHAPE reveals a comprehensive view of HIV-1 RNA genome structure, and further

Trace element transport in western Siberian rivers across a permafrost gradient

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Pokrovsky, Oleg S.; Manasypov, Rinat M.; Loiko, Sergey V.; Krickov, Ivan A.; Kopysov, Sergey G.; Kolesnichenko, Larisa G.; Vorobyev, Sergey N.; Kirpotin, Sergey N.

2016-03-01

Towards a better understanding of trace element (TE) transport in permafrost-affected Earth surface environments, we sampled ˜ 60 large and small rivers (important region. No statistically significant effect of the basin size on most TE concentrations was evidenced. Two groups of elements were distinguished: (1) elements that show the same trend throughout the year and (2) elements that show seasonal differences. The first group included elements decreasing northward during all seasons (Sr, Mo, U, As, Sb) marking the underground water influence of river feeding. The elements of the second group exhibited variable behavior in the course of the year. A northward increase during spring period was mostly pronounced for Fe, Al, Co, Zn and Ba and may stem from a combination of enhanced leaching from the topsoil and vegetation and bottom waters of the lakes (spring overturn). A springtime northward decrease was observed for Ni, Cu, Zr and Rb. The increase in element concentration northward was observed for Ti, Ga, Zr and Th only in winter, whereas Fe, Al, rare earth elements (REEs), Pb, Zr, and Hf increased northward in both spring and winter, which could be linked to leaching from peat and transport in the form of Fe-rich colloids. A southward increase in summer was strongly visible for Fe, Ni, Ba, Rb and V, probably due to peat/moss release (Ni, Ba, Rb) or groundwater feeding (Fe, V). Finally, B, Li, Cr, V, Mn, Zn, Cd, and Cs did not show any distinct trend from S to N. The order of landscape component impact on TE concentration in rivers was lakes > bogs > forest. The lakes decreased export of Mn and Co in summer and Ni, Cu, and Rb in spring, presumably due to biotic processes. The lakes enriched the rivers in insoluble lithogenic elements in summer and winter, likely due to TE mobilization from unfrozen mineral sediments. The rank of environmental factors on TE concentration in western Siberian rivers was latitude (three permafrost zones) > season > watershed size

Prospective targets of geological exploration in the Siberian platform and criteria of their feasibility

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D.V. Milyaev

2017-06-01

Full Text Available The relevance of the study is due to the reducing number of prospective blocks remaining unlicensed in Eastern Siberia and the need for feasibility study of the remaining potentially attractive blocks. The aim of the study is evaluation of the resource potential and allocation of new prospective license blocks in Eastern Siberia based on geological and economic criteria. The methods and instruments used in the study. To perform the economic analysis of resources and to assess the efficiency and risks of subsoil exploration and development, the authors used the results of in-house regional geological and geophysical modelling and economic research. A feasibility study of each potential pool was conducted on the author’s automated complex GeoProfi. The authors used probabilistic analysis and the cash flow discounting method to draw up an expert forecast. The results of the study. The study covers the present state and development prospects of oil and gas fields in the Siberian Platform within the Krasnoyarsk Territory, the Irkutsk Region, and the Sakha (Yakutia Republic. The top priority petroleum zones were analysed. A feasibility study of selected areas was conducted. The income density and feasible recoverable reserves density were mapped. The critical parameters that indicate unprofitable targets were calculated. The most feasible subsoil blocks were determined based on the correlation of economic and probability parameters.

Identification of a new mineralized tissue in the notochord of reared Siberian sturgeon (Acipenser baerii).

Science.gov (United States)

Leprévost, Amandine; Azaïs, Thierry; Trichet, Michael; Sire, Jean-Yves

2017-11-01

In a study aiming to improve knowledge on the mineralization of the axial skeleton in reared Siberian sturgeon (Acipenser baerii Brandt, 1869), we discovered a new mineralized tissue within the notochord. To our knowledge, such a structure has never been reported in any vertebrate species with the exception of the pathological mineralization of the notochord remains in degenerative intervertebral disks of mammals. Here, we describe this enigmatic tissue using X-ray microtomography, histological analyses and solid state NMR-spectroscopy. We also performed a 1-year monitoring of the mineral content (MC) of the notochord in relation with seasonal variations of temperature. In all specimens studied from 2-year-old juveniles onwards, this mineralized structure was found within a particular region of the notochord called funiculus. This feature first appears in the abdominal region then extends posteriorly with ageing, while the notochord MC also increases. The mineral phase is mainly composed of amorphous calcium phosphate, a small amount of which changes into hydroxyapatite with ageing. The putative role of this structure is discussed as either a store of minerals available for the phosphocalcic metabolism, or a mechanical support in a species with a poorly mineralized axial skeleton. A pathological feature putatively related to rearing conditions is also discussed. © 2017 Wiley Periodicals, Inc.

Variability in understory evapotranspiration with overstory density in Siberian larch forests

Science.gov (United States)

Tobio, A.; Loranty, M. M.; Kropp, H.; Pena, H., III; Alexander, H. D.; Natali, S.; Kholodov, A. L.

2016-12-01

, our results will help understand how fire regime shifts may alter understory contributions to ecosystem evapotranspiration in Siberian larch forests.

A mitochondrial analysis reveals distinct founder effect signatures in Canarian and Balearic goats.

Science.gov (United States)

Ferrando, A; Manunza, A; Jordana, J; Capote, J; Pons, A; Pais, J; Delgado, T; Atoche, P; Cabrera, B; Martínez, A; Landi, V; Delgado, J V; Argüello, A; Vidal, O; Lalueza-Fox, C; Ramírez, O; Amills, M

2015-08-01

In the course of human migrations, domestic animals often have been translocated to islands with the aim of assuring food availability. These founder events are expected to leave a genetic footprint that may be recognised nowadays. Herewith, we have examined the mitochondrial diversity of goat populations living in the Canarian and Balearic archipelagos. Median-joining network analysis produced very distinct network topologies for these two populations. Indeed, a majority of Canarian goats shared a single ancestral haplotype that segregated in all sampled islands, suggesting a single founder effect followed by a stepping-stone pattern of diffusion. This haplotype also was present in samples collected from archaeological assemblies at Gran Canaria and Lanzarote, making evident its widespread distribution in ancient times. In stark contrast, goats from Majorca and Ibiza did not share any mitochondrial haplotypes, indicating the occurrence of two independent founder events. Furthermore, in Majorcan goats, we detected the segregation of the mitochondrial G haplogroup that has only been identified in goats from Egypt, Iran and Turkey. This finding suggests the translocation of Asian and/or African goats to Majorca, possibly as a consequence of the Phoenician and Carthaginian colonisations of this island. © 2015 Stichting International Foundation for Animal Genetics.

Motor learning in childhood reveals distinct mechanisms for memory retention and re-learning.

Science.gov (United States)

Musselman, Kristin E; Roemmich, Ryan T; Garrett, Ben; Bastian, Amy J

2016-05-01

Adults can easily learn and access multiple versions of the same motor skill adapted for different conditions (e.g., walking in water, sand, snow). Following even a single session of adaptation, adults exhibit clear day-to-day retention and faster re-learning of the adapted pattern. Here, we studied the retention and re-learning of an adapted walking pattern in children aged 6-17 yr. We found that all children, regardless of age, showed adult-like patterns of retention of the adapted walking pattern. In contrast, children under 12 yr of age did not re-learn faster on the next day after washout had occurred-they behaved as if they had never adapted their walking before. Re-learning could be improved in younger children when the adaptation time on day 1 was increased to allow more practice at the plateau of the adapted pattern, but never to adult-like levels. These results show that the ability to store a separate, adapted version of the same general motor pattern does not fully develop until adolescence, and furthermore, that the mechanisms underlying the retention and rapid re-learning of adapted motor patterns are distinct. © 2016 Musselman et al.; Published by Cold Spring Harbor Laboratory Press.

Characterization of the terrigenous organic matter distribution in the bottom sediments of the East Siberian Arctic Shelf

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Dudarev, Oleg; Charkin, Alexander; Semiletov, Igor; Gustafsson, Örjan; Vonk, Jorien; Sánchez-García, Laura

2010-05-01

The Arctic Ocean is a Mediterranean sea with exceptionally large shelves that account for approximately 50% of the total area of the enclosed ocean. Accordingly, the inorganic and organic character of the sediments both on the shelves and in the basins of the Arctic Ocean strongly reflect a pervasive influence from the surrounding land/thawing permafrost (Macdonald et al., 2008). The East Siberian Arctic Shelf (ESAS) is an enormous, shallow shelf that receives most of its particulate supply from coastal erosion A notable characteristic of the ESAS is an extremely large gradient of hydrological and biogeochemical parameters from Long Strait/Wrangell Island to the Lena River Delta that corresponds to geographically critical contrasts in the Arctic system where the Pacific and local shelf waters interact over the shelf (Semiletov et al., 2005). ESAS is clearly important region for storing and processing material that derives from the land and the sea. Here we synthesize the lithological and biogochemical data obtained in the ESAS by Laboratory of Arctic studies POI in cooperation with the IARC and SU during the last 10 years (1999-2009). Highest organic carbon (OC) concentrations in the surface sediment (up to 4w/w%) was found near mouths of major rivers (Lena, Yana, Indigirka, Alaseya, Kolyma), and near highly eroded coast (1-2 w/w %). .However, sedimentation over the major portion of shallow ESAS is dominated by coastal erosion not riverine runoff. It has been shown that contribution of terrestrial organic carbon (CTOM) is up to 100% in areas strongly impacted by coastal erosion. Lowest OC values (~0.1-0.5 w/w %) were found in the relic sediments of shoals (e.g. Semenovskaya, Vasilevskaya, and Diomid). New detail maps of distribution of sediment OC, CTOM, and C/N are considered along with the sediment sizing and mineralogical data. This multi-year study was supported by the Russian Foundation for Basic Research (Russian NSF), FEBRAS, NOAA, NSF, Wallenberg Foundation

The role of summer precipitation and summer temperature in establishment and growth of dwarf shrub Betula nana in northeast Siberian tundra

DEFF Research Database (Denmark)

Li, Bingxi; Heijmans, Monique M P D; Berendse, Frank

2016-01-01

It is widely believed that deciduous tundra-shrub dominance is increasing in the pan-Arctic region, mainly due to rising temperature. We sampled dwarf birch (Betula nana L.) at a northeastern Siberian tundra site and used dendrochronological methods to explore the relationship between climatic...... variables and local shrub dominance. We found that establishment of shrub ramets was positively related to summer precipitation, which implies that the current high dominance of B. nana at our study site could be related to high summer precipitation in the period from 1960 to 1990. The results confirmed...... that early summer temperature is most influential to annual growth rates of B. nana. In addition, summer precipitation stimulated shrub growth in years with warm summers, suggesting that B. nana growth may be co-limited by summer moisture supply. The dual controlling role of temperature and summer...

Phylogenetic variation of Aggregatibacter actinomycetemcomitans serotype e reveals an aberrant distinct evolutionary stable lineage

NARCIS (Netherlands)

van der Reijden, Wil A.; Brunner, Jorg; Bosch-Tijhof, Carolien J.; van Trappen, Stefanie; Rijnsburger, Martine C.; de Graaff, Marcel P. W.; van Winkelhoff, Arie J.; Cleenwerck, Ilse; de Vos, Paul

2010-01-01

The periodontal pathogen Aggregatibacter actinomycetemcomitans that comprises six serotypes (a-f), is often identified by PCR-based techniques targeting the 16S rRNA gene. In this study, 16S rRNA gene sequence analysis revealed an aberrant cluster of 19 strains within serotype e, denoted as serotype

Characterization of Trichome-Expressed BAHD Acyltransferases in Petunia axillaris Reveals Distinct Acylsugar Assembly Mechanisms within the Solanaceae1[OPEN

Science.gov (United States)

Uebler, Joseph B.; Liu, Xiaoxiao

2017-01-01

Acylsugars are synthesized in the glandular trichomes of the Solanaceae family and are implicated in protection against abiotic and biotic stress. Acylsugars are composed of either sucrose or glucose esterified with varying numbers of acyl chains of differing length. In tomato (Solanum lycopersicum), acylsugar assembly requires four acylsugar acyltransferases (ASATs) of the BAHD superfamily. Tomato ASATs catalyze the sequential esterification of acyl-coenzyme A thioesters to the R4, R3, R3ʹ, and R2 positions of sucrose, yielding a tetra-acylsucrose. Petunia spp. synthesize acylsugars that are structurally distinct from those of tomato. To explore the mechanisms underlying this chemical diversity, a Petunia axillaris transcriptome was mined for trichome preferentially expressed BAHDs. A combination of phylogenetic analyses, gene silencing, and biochemical analyses coupled with structural elucidation of metabolites revealed that acylsugar assembly is not conserved between tomato and petunia. In P. axillaris, tetra-acylsucrose assembly occurs through the action of four ASATs, which catalyze sequential addition of acyl groups to the R2, R4, R3, and R6 positions. Notably, in P. axillaris, PaxASAT1 and PaxASAT4 catalyze the acylation of the R2 and R6 positions of sucrose, respectively, and no clear orthologs exist in tomato. Similarly, petunia acylsugars lack an acyl group at the R3ʹ position, and congruently, an ortholog of SlASAT3, which catalyzes acylation at the R3ʹ position in tomato, is absent in P. axillaris. Furthermore, where putative orthologous relationships of ASATs are predicted between tomato and petunia, these are not supported by biochemical assays. Overall, these data demonstrate the considerable evolutionary plasticity of acylsugar biosynthesis. PMID:28701351

DNA methylation analysis reveals distinct methylation signatures in pediatric germ cell tumors

International Nuclear Information System (INIS)

Amatruda, James F; Frazier, A Lindsay; Poynter, Jenny N; Ross, Julie A; Christensen, Brock; Fustino, Nicholas J; Chen, Kenneth S; Hooten, Anthony J; Nelson, Heather; Kuriger, Jacquelyn K; Rakheja, Dinesh

2013-01-01

Aberrant DNA methylation is a prominent feature of many cancers, and may be especially relevant in germ cell tumors (GCTs) due to the extensive epigenetic reprogramming that occurs in the germ line during normal development. We used the Illumina GoldenGate Cancer Methylation Panel to compare DNA methylation in the three main histologic subtypes of pediatric GCTs (germinoma, teratoma and yolk sac tumor (YST); N = 51) and used recursively partitioned mixture models (RPMM) to test associations between methylation pattern and tumor and demographic characteristics. We identified genes and pathways that were differentially methylated using generalized linear models and Ingenuity Pathway Analysis. We also measured global DNA methylation at LINE1 elements and evaluated methylation at selected imprinted loci using pyrosequencing. Methylation patterns differed by tumor histology, with 18/19 YSTs forming a distinct methylation class. Four pathways showed significant enrichment for YSTs, including a human embryonic stem cell pluripotency pathway. We identified 190 CpG loci with significant methylation differences in mature and immature teratomas (q < 0.05), including a number of CpGs in stem cell and pluripotency-related pathways. Both YST and germinoma showed significantly lower methylation at LINE1 elements compared with normal adjacent tissue while there was no difference between teratoma (mature and immature) and normal tissue. DNA methylation at imprinted loci differed significantly by tumor histology and location. Understanding methylation patterns may identify the developmental stage at which the GCT arose and the at-risk period when environmental exposures could be most harmful. Further, identification of relevant genetic pathways could lead to the development of new targets for therapy

Sources and the flux pattern of dissolved carbon in rivers of the Yenisey basin draining the Central Siberian Plateau

International Nuclear Information System (INIS)

Prokushkin, A S; Korets, M A; Prokushkin, S G; Pokrovsky, O S; Shirokova, L S; Viers, J; Amon, R M W; Guggenberger, G; McDowell, W H

2011-01-01

Frequent measurements of dissolved organic (DOC) and inorganic (DIC) carbon concentrations in rivers during snowmelt, the entire ice-free season, and winter were made in five large watersheds (15 000–174 000 km 2 ) of the Central Siberian Plateau (Yenisey River basin). These differ in the degree of continuous permafrost coverage, mean annual air temperature, and the proportion of tundra and forest vegetation. With an annual DOC export from the catchment areas of 2.8–4.7 gC m −2 as compared to an annual DIC export of 1.0–2.8 gC m −2 , DOC was the dominant component of terrigenous C released to rivers. There was strong temporal variation in the discharge of DOC and DIC. Like for other rivers of the pan-arctic and boreal zones, snowmelt dominated annual fluxes, being 55–71% for water runoff, 64–82% for DOC and 37–41% for DIC. Likewise, DOC and DIC exhibited also a strong spatial variation in C fluxes, with both dissolved C species decreasing from south to north. The rivers of the southern part of the plateau had the largest flow-weighted DOC concentrations among those previously reported for Siberian rivers, but the smallest flow-weighted DIC concentrations. In the study area, DOC and DIC fluxes were negatively correlated with the distribution of continuous permafrost and positively correlated with mean annual air temperature. A synthesis of literature data shows similar trends from west to east, with an eastward decrease of dissolved C concentrations and an increased proportion of DOC in the total dissolved C flux. It appears that there are two contemporary limitations for river export of terrigenous C across Siberia: (1) low productivity of ecosystems with respect to potentially mobilizable organic C, slow weathering rates with concomitant small formation of bicarbonate, and/or wildfire disturbance limit the pools of organic and inorganic C that can be mobilized for transport in rivers (source-limited), and (2) mobilization of available pools of C is

Distinct steps of neural induction revealed by Asterix, Obelix and TrkC, genes induced by different signals from the organizer.

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Sonia Pinho

2011-04-01

Full Text Available The amniote organizer (Hensen's node can induce a complete nervous system when grafted into a peripheral region of a host embryo. Although BMP inhibition has been implicated in neural induction, non-neural cells cannot respond to BMP antagonists unless previously exposed to a node graft for at least 5 hours before BMP inhibitors. To define signals and responses during the first 5 hours of node signals, a differential screen was conducted. Here we describe three early response genes: two of them, Asterix and Obelix, encode previously undescribed proteins of unknown function but Obelix appears to be a nuclear RNA-binding protein. The third is TrkC, a neurotrophin receptor. All three genes are induced by a node graft within 4-5 hours but they differ in the extent to which they are inducible by FGF: FGF is both necessary and sufficient to induce Asterix, sufficient but not necessary to induce Obelix and neither sufficient nor necessary for induction of TrkC. These genes are also not induced by retinoic acid, Noggin, Chordin, Dkk1, Cerberus, HGF/SF, Somatostatin or ionomycin-mediated Calcium entry. Comparison of the expression and regulation of these genes with other early neural markers reveals three distinct "epochs", or temporal waves, of gene expression accompanying neural induction by a grafted organizer, which are mirrored by specific stages of normal neural plate development. The results are consistent with neural induction being a cascade of responses elicited by different signals, culminating in the formation of a patterned nervous system.

Crystal structure of the thioesterification conformation of Bacillus subtilis o-succinylbenzoyl-CoA synthetase reveals a distinct substrate-binding mode.

Science.gov (United States)

Chen, Yaozong; Li, Tin Lok; Lin, Xingbang; Li, Xin; Li, Xiang David; Guo, Zhihong

2017-07-21

o -Succinylbenzoyl-CoA (OSB-CoA) synthetase (MenE) is an essential enzyme in bacterial vitamin K biosynthesis and an important target in the development of new antibiotics. It is a member of the adenylating enzymes (ANL) family, which reconfigure their active site in two different active conformations, one for the adenylation half-reaction and the other for a thioesterification half-reaction, in a domain-alternation catalytic mechanism. Although several aspects of the adenylating mechanism in MenE have recently been uncovered, its thioesterification conformation remains elusive. Here, using a catalytically competent Bacillus subtilis mutant protein complexed with an OSB-CoA analogue, we determined MenE high-resolution structures to 1.76 and 1.90 Å resolution in a thioester-forming conformation. By comparison with the adenylation conformation, we found that MenE's C-domain rotates around the Ser-384 hinge by 139.5° during domain-alternation catalysis. The structures also revealed a thioesterification active site specifically conserved among MenE orthologues and a substrate-binding mode distinct from those of many other acyl/aryl-CoA synthetases. Of note, using site-directed mutagenesis, we identified several residues that specifically contribute to the thioesterification half-reaction without affecting the adenylation half-reaction. Moreover, we observed a substantial movement of the activated succinyl group in the thioesterification half-reaction. These findings provide new insights into the domain-alternation catalysis of a bacterial enzyme essential for vitamin K biosynthesis and of its adenylating homologues in the ANL enzyme family. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

Peptidomic and transcriptomic profiling of four distinct spider venoms.

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Vera Oldrati

Full Text Available Venom based research is exploited to find novel candidates for the development of innovative pharmacological tools, drug candidates and new ingredients for cosmetic and agrochemical industries. Moreover, venomics, as a well-established approach in systems biology, helps to elucidate the genetic mechanisms of the production of such a great molecular biodiversity. Today the advances made in the proteomics, transcriptomics and bioinformatics fields, favor venomics, allowing the in depth study of complex matrices and the elucidation even of minor compounds present in minute biological samples. The present study illustrates a rapid and efficient method developed for the elucidation of venom composition based on NextGen mRNA sequencing of venom glands and LC-MS/MS venom proteome profiling. The analysis of the comprehensive data obtained was focused on cysteine rich peptide toxins from four spider species originating from phylogenetically distant families for comparison purposes. The studied species were Heteropoda davidbowie (Sparassidae, Poecilotheria formosa (Theraphosidae, Viridasius fasciatus (Viridasiidae and Latrodectus mactans (Theridiidae. This led to a high resolution profiling of 284 characterized cysteine rich peptides, 111 of which belong to the Inhibitor Cysteine Knot (ICK structural motif. The analysis of H. davidbowie venom revealed a high richness in term of venom diversity: 95 peptide sequences were identified; out of these, 32 peptides presented the ICK structural motif and could be classified in six distinct families. The profiling of P. formosa venom highlighted the presence of 126 peptide sequences, with 52 ICK toxins belonging to three structural distinct families. V. fasciatus venom was shown to contain 49 peptide sequences, out of which 22 presented the ICK structural motif and were attributed to five families. The venom of L. mactans, until now studied for its large neurotoxins (Latrotoxins, revealed the presence of 14

Norm of Exploitation of Miners in Siberia in the Late 19th – Early 20th Centuries

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Vasiliy P. Zinov'ev

2015-06-01

Full Text Available The article focuses on the question of the distribution of added value in the mining industry in Siberia in the late 19th – early 20th centuries. Relying on the analysis of financial reports from Siberian goldmines and coalmines, the author reveals the correlation between the means spent on workforce and the means spent on income and the companies’ non-production expenses. The calculated norm of added value – the most precise reflection of the measure of wage labour exploitation – turned out to be higher for Siberian mine workers in the late 19th – early 20th centuries than for workers in the European Russia and demonstrated the tendency to further growth. The author believes it to be a consequence of the modernization of production and the exploitation of the richest and most easily accessible Siberian deposits.

The differentiated assessment of damage to economy of subjects of the Siberian Federal District from road and transport accident rate

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Petrov, Artur I.; Svistunova, Vera A.; Petrova, Daria A.

2018-01-01

The results of assessment of damage from the road accident rate in subjects of the Siberian Federal District (SFD) of the Russian Federation are presented in the article. The thesis about spatial differentiation of the Gross Regional Product (GRP) losses in different regions of the country because of people’s death and injuries in the road accidents (RA) and due to formations of property and ecological damage was chosen as a working hypothesis. The calculations, carried out for 12 subjects of the SFD, confirmed this idea. The range of calculated values of economic damage from road accident rate (in % of GRP) was from 1.3 (Tomsk region) to 12.6 (Republic of Tyva) in 2015. In article the attempt to explain the received result by heterogeneous development of economics in various Russian regions is made. The consequence of it is a heterogeneous quality of people’s life and quite various perception of life value by inhabitants of different regions that influences their life safety level.

Feeding ecology of non-native Siberian prawns, Palaemon modestus (Heller, 1862) (Decapoda, Palaemonidae), in the lower Snake River, Washington, U.S.A.

Science.gov (United States)

Tiffan, Kenneth F.; Hurst, William

2016-01-01

We used both stomach content and stable isotope analyses to describe the feeding ecology of Siberian prawns Palaemon modestus (Heller, 1862), a non-native caridean shrimp that is a relatively recent invader of the lower Snake River. Based on identifiable prey in stomachs, the opossum shrimp Neomysis mercedis Holmes, 1896 comprised up to 34-55% (by weight) of diets of juvenile to adult P. modestus, which showed little seasonal variation. Other predominant items/taxa consumed included detritus, amphipods, dipteran larvae, and oligochaetes. Stable isotope analysis supported diet results and also suggested that much of the food consumed by P. modestus that was not identifiable came from benthic sources — predominantly invertebrates of lower trophic levels and detritus. Palaemon modestus consumption of N. mercedis may pose a competitive threat to juvenile salmon and resident fishes which also rely heavily on that prey.

Methane oxidation associated to submerged brown-mosses buffers methane emissions from Siberian polygonal peatlands

Science.gov (United States)

Liebner, Susanne; Zeyer, Josef; Knoblauch, Christian

2010-05-01

Circumpolar peatlands store roughly 18 % of the globally stored carbon in soils [based on 1, 2]. Also, northern wetlands and tundra are a net source of methane (CH4), an effective greenhouse gas (GHG), with an estimated annual CH4 release of 7.2% [3] or 8.1% [4] of the global total CH4 emission. Although it is definite that Arctic tundra significantly contributes to the global methane emissions in general, regional variations in GHG fluxes are enormous. CH4 fluxes of polygonal tundra within the Siberian Lena Delta, for example, were reported to be low [5, 6], particularly at open water polygonal ponds and small lakes [7] which make up around 10 % of the delta's surface. Low methane emissions from polygonal ponds oppose that Arctic permafrost thaw ponds are generally known to emit large amounts of CH4 [8]. Combining tools of biogeochemistry and molecular microbiology, we identified sinks of CH4 in polygonal ponds from the Lena Delta that were not considered so far in GHG studies from Arctic wetlands. Pore water CH4 profiling in polygonal ponds on Samoylov, a small island in the central part of the Lena Delta, revealed a pronounced zone of CH4 oxidation near the vegetation surface in submerged layers of brown-mosses. Here, potential CH4 oxidation was an order of magnitude higher than in non-submerged mosses and in adjacent bulk soil. We could additionally show that this moss associated methane oxidation (MAMO) is hampered when exposure of light is prevented. Shading of plots with submerged Scorpidium scorpioides inhibited MAMO leading to higher CH4 concentrations and an increase in CH4 fluxes by a factor of ~13. Compared to non-submerged mosses, the submerged mosses also showed significantly lower δ13C values indicating that they use carbon dioxide derived from methane oxidation for photosynthesis. Applying stable isotope probing of DNA, type II methanotrophs were identified to be responsible for the oxidation of CH4 in the submerged Scorpidium scorpioides. Our

Multilevel landscape utilization of the Siberian flying squirrel: Scale effects on species habitat use.

Science.gov (United States)

Remm, Jaanus; Hanski, Ilpo K; Tuominen, Sakari; Selonen, Vesa

2017-10-01

Animals use and select habitat at multiple hierarchical levels and at different spatial scales within each level. Still, there is little knowledge on the scale effects at different spatial levels of species occupancy patterns. The objective of this study was to examine nonlinear effects and optimal-scale landscape characteristics that affect occupancy of the Siberian flying squirrel, Pteromys volans , in South- and Mid-Finland. We used presence-absence data ( n  = 10,032 plots of 9 ha) and novel approach to separate the effects on site-, landscape-, and regional-level occupancy patterns. Our main results were: landscape variables predicted the placement of population patches at least twice as well as they predicted the occupancy of particular sites; the clear optimal value of preferred habitat cover for species landscape-level abundance is a surprisingly low value (10% within a 4 km buffer); landscape metrics exert different effects on species occupancy and abundance in high versus low population density regions of our study area. We conclude that knowledge of regional variation in landscape utilization will be essential for successful conservation of the species. The results also support the view that large-scale landscape variables have high predictive power in explaining species abundance. Our study demonstrates the complex response of species occurrence at different levels of population configuration on landscape structure. The study also highlights the need for data in large spatial scale to increase the precision of biodiversity mapping and prediction of future trends.

Photoperiod and aggression induce changes in ventral gland compounds exclusively in male Siberian hamsters.

Science.gov (United States)

Rendon, Nikki M; Soini, Helena A; Scotti, Melissa-Ann L; Weigel, Ellen R; Novotny, Milos V; Demas, Gregory E

2016-05-01

Chemical communication is a critical component of social behavior as it facilitates social encounters, allows for evaluation of the social partner, defines territories and resources, and advertises information such as sex and physiological state of an animal. Odors provide a key source of information about the social environment to rodents; however, studies identifying chemical compounds have thus far focused primarily on few species, particularly the house mouse. Moreover, considerably less attention has been focused on how environmental factors, reproductive phenotype, and behavioral context alter these compounds outside of reproduction. We examined the effects of photoperiod, sex, and social context on chemical communication in the seasonally breeding Siberian hamster. We sampled ventral gland secretions in both male and female hamsters before and after an aggressive encounter and identified changes in a range of volatile compounds. Next, we investigated how photoperiod, reproductive phenotype, and aggression altered ventral gland volatile compound composition across the sexes. Males exhibited a more diverse chemical composition, more sex-specific volatiles, and showed higher levels of excretion compared to females. Individual volatiles were also differentially excreted across photoperiod and reproductive phenotype, as well as differentially altered in response to an aggressive encounter. Female volatile compound composition, in contrast, did not differ across photoperiods or in response to aggression. Collectively, these data contribute to a greater understanding of context-dependent changes in chemical communication in a seasonally breeding rodent. Copyright © 2016 Elsevier Inc. All rights reserved.

Molecular phylogenetics of the genus Costularia (Schoeneae, Cyperaceae) reveals multiple distinct evolutionary lineages.

Science.gov (United States)

Larridon, Isabel; Bauters, Kenneth; Semmouri, Ilias; Viljoen, Jan-Adriaan; Prychid, Christina J; Muasya, A Muthama; Bruhl, Jeremy J; Wilson, Karen L; Senterre, Bruno; Goetghebeur, Paul

2018-04-19

We investigated the monophyly of Costularia (25 species), a genus of tribe Schoeneae (Cyperaceae) that illustrates a remarkable distribution pattern from southeastern Africa, over Madagascar, the Mascarenes and Seychelles, to Malesia and New Caledonia. A further species, Tetraria borneensis, has been suggested to belong to Costularia. Relationships and divergence times were inferred using an existing four marker phylogeny of Cyperaceae tribe Schoeneae expanded with newly generated sequence data mainly for Costularia s.l. species. Phylogenetic reconstruction was executed using Bayesian inference and maximum likelihood approaches. Divergence times were estimated using a relaxed molecular clock model, calibrated with fossil data. Based on our results, Tetraria borneensis is not related to the species of Costularia. Costularia s.l. is composed of four distinct evolutionary lineages. Two lineages, one including the type species, are part of the Oreobolus clade, i.e. a much reduced genus Costularia restricted to southeastern Africa, Madagascar, the Mascarenes and Seychelles, and a small endemic genus from New Caledonia for which a new genus Chamaedendron is erected based on Costularia subgenus Chamaedendron. The other two lineages are part of the Tricostularia clade, i.e. a separate single-species lineage from the Seychelles for which a new genus (Xyroschoenus) is described, and Costularia subgenus Lophoschoenus. For the latter, more research is needed to test whether they are congeneric with the species placed in the reticulate-sheathed Tetraria clade. Copyright © 2018 Elsevier Inc. All rights reserved.

Myositis, Ganglioneuritis, and Myocarditis with Distinct Perifascicular Muscle Atrophy in a 2-Year-Old Male Boxer

Directory of Open Access Journals (Sweden)

Paul M. Rossman

2018-02-01

Full Text Available A 2-year-old male, intact Boxer was referred for chronic diarrhea, hyporexia, labored breathing, weakness and elevated creatine kinase, and alanine aminotransferase activities. Initial examination and diagnostics revealed a peripheral nervous system neurolocalization, atrial premature complexes, and generalized megaesophagus. Progressive worsening of the dog’s condition was noted after 36 h; the dog developed aspiration pneumonia, was febrile and oxygen dependent. The owners elected humane euthanasia. Immediately postmortem biopsies of the left cranial tibial and triceps muscles and the left peroneal nerve were obtained. Postmortem histology revealed concurrent myositis, myocarditis, endocarditis, and ganglioneuritis. Mixed mononuclear cell infiltrations and a distinct perifascicular pattern of muscle fiber atrophy was present in both muscles. This is a novel case of diffuse inflammatory myopathy with a distinct perifascicular pattern of atrophy in addition to endocarditis, myocarditis, and epicarditis.

Differential effects of oxytocin on social sensitivity in two distinct breeds of dogs (Canis familiaris).

Science.gov (United States)

Kovács, Krisztina; Kis, Anna; Pogány, Ákos; Koller, Dóra; Topál, József

2016-12-01

Dogs have been proven to show several human-analogue social behaviors, and recent research raises the possibility that the oxytocin system is related to these. However, despite dogs' general tendency to excel in the domain of social cognition, there is increasing evidence that dogs' ability to utilize human signals may vary with breed. Moreover, breeds may show differences not only in their 'inborn' communicative abilities, but also in their learning skills related to these. The aim of the present study was to explore breed differences and breed-specific effects of oxytocin administration on different aspects of social responsiveness. Dogs from two markedly different breeds, Border Collies (cooperative workers) and Siberian Huskies (independent workers) were tested. After having received intranasal administration of oxytocin or placebo, subjects participated in three behavioral tests measuring social responsiveness. Our results show that there are several behavioral differences between the two breeds and also that there are differential effects of the oxytocin treatment. Border Collies were in general more susceptible to the 'social' effects of oxytocin compared to Siberian Huskies: after oxytocin administration they (1) looked more at the experimenter in the 'Unreachable food' situation, (2) looked more at the owner and shifted their gaze more between the sound source and the owner in a potentially dangerous situation, and (3) looked longer at the experimenter's eyes in the 'Tolerance of prolonged eye contact' test. These findings suggest that selection for enhanced cooperative abilities, possibly complemented by the effect of different social environments the two breeds experience, affects dogs' performance in several behavioral tests and that the neurohormonal background differently modulates social behavior in different working breeds. Copyright © 2016 Elsevier Ltd. All rights reserved.

Latent memory facilitates relearning through molecular signaling mechanisms that are distinct from original learning.

Science.gov (United States)

Menges, Steven A; Riepe, Joshua R; Philips, Gary T

2015-09-01

A highly conserved feature of memory is that it can exist in a latent, non-expressed state which is revealed during subsequent learning by its ability to significantly facilitate (savings) or inhibit (latent inhibition) subsequent memory formation. Despite the ubiquitous nature of latent memory, the mechanistic nature of the latent memory trace and its ability to influence subsequent learning remains unclear. The model organism Aplysia californica provides the unique opportunity to make strong links between behavior and underlying cellular and molecular mechanisms. Using Aplysia, we have studied the mechanisms of savings due to latent memory for a prior, forgotten experience. We previously reported savings in the induction of three distinct temporal domains of memory: short-term (10min), intermediate-term (2h) and long-term (24h). Here we report that savings memory formation utilizes molecular signaling pathways that are distinct from original learning: whereas the induction of both original intermediate- and long-term memory in naïve animals requires mitogen activated protein kinase (MAPK) activation and ongoing protein synthesis, 2h savings memory is not disrupted by inhibitors of MAPK or protein synthesis, and 24h savings memory is not dependent on MAPK activation. Collectively, these findings reveal that during forgetting, latent memory for the original experience can facilitate relearning through molecular signaling mechanisms that are distinct from original learning. Copyright © 2015 Elsevier Inc. All rights reserved.

ASSOCIATIVE EXPERIMENT BY A. NAZAROV AND R. SOKOLOV’S PROCEDURE “SERIES OF THEMATIC ASSOCIATIONS” WITH THE STIMULUS “CONTEMPORARY RUSSIAN CULTURAL ELITE” AMONG STUDENTS OF SIBERIAN FEDEAL UNIVERSITY

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Ms. Elena V. Lazutkina

2016-09-01

Full Text Available The article deals with the concept of contemporary Russian cultural elite as a phenomenon of public opinion of the students of Siberian Federal University in the frame of A. Nazarov and R. Sokolov’s associative experiment. As a result of our research we collected a hundred and three students’ answers and reduced them to fourteen categories of associates. We developed a diagram of a collective semantic spectrum of thematic associations and a table of eleven major associates and analysed individualities of the answers of students majoring in different subjects. Conclusions can help with the correction of students’ educational process.

SPATIALLY RESOLVED SPECTROSCOPY OF EUROPA: THE DISTINCT SPECTRUM OF LARGE-SCALE CHAOS

International Nuclear Information System (INIS)

Fischer, P. D.; Brown, M. E.; Hand, K. P.

2015-01-01

We present a comprehensive analysis of spatially resolved moderate spectral resolution near-infrared spectra obtained with the adaptive optics system at the Keck Observatory. We identify three compositionally distinct end member regions: the trailing hemisphere bullseye, the leading hemisphere upper latitudes, and a third component associated with leading hemisphere chaos units. We interpret the composition of the three end member regions to be dominated by irradiation products, water ice, and evaporite deposits or salt brines, respectively. The third component is associated with geological features and distinct from the geography of irradiation, suggesting an endogenous identity. Identifying the endogenous composition is of particular interest for revealing the subsurface composition. However, its spectrum is not consistent with linear mixtures of the salt minerals previously considered relevant to Europa. The spectrum of this component is distinguished by distorted hydration features rather than distinct spectral features, indicating hydrated minerals but making unique identification difficult. In particular, it lacks features common to hydrated sulfate minerals, challenging the traditional view of an endogenous salty component dominated by Mg-sulfates. Chloride evaporite deposits are one possible alternative

SPATIALLY RESOLVED SPECTROSCOPY OF EUROPA: THE DISTINCT SPECTRUM OF LARGE-SCALE CHAOS

Energy Technology Data Exchange (ETDEWEB)

Fischer, P. D.; Brown, M. E. [Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA 91125 (United States); Hand, K. P., E-mail: pfischer@caltech.edu [Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109 (United States)

2015-11-15

We present a comprehensive analysis of spatially resolved moderate spectral resolution near-infrared spectra obtained with the adaptive optics system at the Keck Observatory. We identify three compositionally distinct end member regions: the trailing hemisphere bullseye, the leading hemisphere upper latitudes, and a third component associated with leading hemisphere chaos units. We interpret the composition of the three end member regions to be dominated by irradiation products, water ice, and evaporite deposits or salt brines, respectively. The third component is associated with geological features and distinct from the geography of irradiation, suggesting an endogenous identity. Identifying the endogenous composition is of particular interest for revealing the subsurface composition. However, its spectrum is not consistent with linear mixtures of the salt minerals previously considered relevant to Europa. The spectrum of this component is distinguished by distorted hydration features rather than distinct spectral features, indicating hydrated minerals but making unique identification difficult. In particular, it lacks features common to hydrated sulfate minerals, challenging the traditional view of an endogenous salty component dominated by Mg-sulfates. Chloride evaporite deposits are one possible alternative.

Identifying Two Groups of Entitled Individuals: Cluster Analysis Reveals Emotional Stability and Self-Esteem Distinction.

Science.gov (United States)

Crowe, Michael L; LoPilato, Alexander C; Campbell, W Keith; Miller, Joshua D

2016-12-01

The present study hypothesized that there exist two distinct groups of entitled individuals: grandiose-entitled, and vulnerable-entitled. Self-report scores of entitlement were collected for 916 individuals using an online platform. Model-based cluster analyses were conducted on the individuals with scores one standard deviation above mean (n = 159) using the five-factor model dimensions as clustering variables. The results support the existence of two groups of entitled individuals categorized as emotionally stable and emotionally vulnerable. The emotionally stable cluster reported emotional stability, high self-esteem, more positive affect, and antisocial behavior. The emotionally vulnerable cluster reported low self-esteem and high levels of neuroticism, disinhibition, conventionality, psychopathy, negative affect, childhood abuse, intrusive parenting, and attachment difficulties. Compared to the control group, both clusters reported being more antagonistic, extraverted, Machiavellian, and narcissistic. These results suggest important differences are missed when simply examining the linear relationships between entitlement and various aspects of its nomological network.

Photoperiod history differentially impacts reproduction and immune function in adult Siberian hamsters.

Science.gov (United States)

Prendergast, Brian J; Pyter, Leah M

2009-12-01

Seasonal changes in numerous aspects of mammalian immune function arise as a result of the annual variation in environmental day length (photoperiod), but it is not known if absolute photoperiod or relative change in photoperiod drives these changes. This experiment tested the hypothesis that an individual's history of exposure to day length determines immune responses to ambiguous, intermediate-duration day lengths. Immunological (blood leukocytes, delayed-type hypersensitivity reactions [DTH]), reproductive, and adrenocortical responses were assessed in adult Siberian hamsters (Phodopus sungorus) that had been raised initially in categorically long (15-h light/day; 15L) or short (9L) photoperiods and were subsequently transferred to 1 of 7 cardinal experimental photoperiods between 9L and 15L, inclusive. Initial photoperiod history interacted with contemporary experimental photoperiods to determine reproductive responses: 11L, 12L, and 13L caused gonadal regression in hamsters previously exposed to 15L, but elicited growth in hamsters previously in 9L. In hamsters with a 15L photoperiod history, photoperiods history, DTH responses were largely unaffected by increases in day length. Enhancement and suppression of blood leukocyte concentrations occurred at 13L in hamsters with photoperiod histories of 15L and 9L, respectively; however, prior exposure to 9L imparted marked hysteresis effects, which suppressed baseline leukocyte concentrations. Cortisol concentrations were only enhanced in 15L hamsters transferred to 9L and, in common with DTH, were unaffected by photoperiod treatments in hamsters with a 9L photoperiod history. Photoperiod history acquired in adulthood impacts immune responses to photoperiod, but manifests in a markedly dissimilar fashion as compared to the reproductive system. Prior photoperiod exposure has an enduring impact on the ability of the immune system to respond to subsequent changes in day length.

WAIST CIRCUMFERENCE AS INDICATOR COMPONENTS OF METABOLIC SYNDROME IN THE SIBERIAN POPULATION

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G. I. Simonova

2014-01-01

Full Text Available Object of research: to determine the cut-off point of waist circumference (WC identify the components of metabolic syndrome (MS in a large industrial center of Western Siberia.In the period from 2003 to 2005 in the screening population surveyed 9362 people, including 4268 men (45.6% and 5094 women (54.4%.The response rate was 61%. The study protocol included a sociodemographic data, measurement of blood pressure (BP, anthropometry (height, weight, WC, the definition of biochemical parameters. Statistical analysis was performed using the package SPSS. To determine the cut-off points of the used ROC model.In the group with ≥2 components of MS cut-off point WC from the men was 93.3 cm (sensitivity 72%, specificity 83%, women – 90.2 cm (sensitivity 72%, specificity 62%.The lowest cut-off point WC marked BP ≥ 130/85 mm Hg for men – 90 cm (sensitivity 66.8%, specificity 58.1%, for women – 86.5 cm (sensitivity 71.0%, specificity 55.7%. The highest cut-off point from the defined patients with diabetes for men was 99.0 cm (sensitivity 61%, specificity 70.2%, for women – cm (sensitivity 64.1%, specificity 65.9%.Conclusions: Cut-off point from the persons with the presence of ≥2 MS components in Siberian population 45–69 years, in accordance with the ROC analysis are 93.3 cm for men and 90.2 cm for women. The lowest cut-off point WC marked BP ≥ 130/85 mm Hg for men – 90 cm, for women – 86.5 cm. The highest cut-off point from the defined patients with diabetes for men was 99.0 cm, for women – 95 cm.

Distinct Biological Potential of Streptococcus gordonii and Streptococcus sanguinis Revealed by Comparative Genome Analysis

OpenAIRE

Zheng, Wenning; Tan, Mui Fern; Old, Lesley A.; Paterson, Ian C.; Jakubovics, Nicholas S.; Choo, Siew Woh

2017-01-01

Streptococcus gordonii and Streptococcus sanguinis are pioneer colonizers of dental plaque and important agents of bacterial infective endocarditis (IE). To gain a greater understanding of these two closely related species, we performed comparative analyses on 14 new S. gordonii and 5 S. sanguinis strains using various bioinformatics approaches. We revealed S. gordonii and S. sanguinis harbor open pan-genomes and share generally high sequence homology and number of core genes including virule...

Terpenoid emissions from fully grown east Siberian Larix cajanderi trees

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M. K. Kajos

2013-07-01

Full Text Available While emissions of many biogenic volatile organic compounds (BVOCs, such as terpenoids, have been studied quite intensively in North American and Scandinavian boreal forests, the vast Siberian boreal forests have remained largely unexplored by experimental emission studies. In this study the shoot-scale terpenoid emission rates from two mature Larix cajanderi trees growing in their natural habitat in eastern Siberia were measured at the Spasskaya Pad flux measurement site (62°15´18.4" N, 129°37´07.9" E located on the western bank of the Lena river. The measurements were conducted during three campaigns: 3–24 June, 8–26 July, and 14–30 August, in the summer of 2009. A dynamic flow-through enclosure technique was applied for adsorbent sampling, and the samples were analysed offline with a gas chromatograph. Between 29 and 45 samples were taken from each shoot during all three campaigns. Seven different monoterpenes, six different sesquiterpenes, linalool isoprene, and 2-methyl-3-buten-2-ol (MBO were identified. The monthly median value of the total terpenoid emissions varied between 0.006 and 10.6 μg gdw−1 h−1. The emissions were dominated by monoterpenes, which constituted between 61 and 92% of the total emissions. About half of the monoterpene emissions were comprised of Δ 3-carene; α- and β-pinene had significant emissions as well. Linalool emissions were also substantial, comprising 3–37% of the total emissions, especially in June. Sesquiterpenes accounted for less than 3% and isoprene less than 1% of the total emissions. Based on the measured emission rates, the relative atmospheric concentration of each compound was estimated. Monoterpenes were the species with the highest relative concentration, while linalool and sesquiterpenes had a notably smaller contribution to the estimated atmospheric concentration than to the emission rates. A temperature-dependent pool algorithm with a constant β (0.09 °C−1 for monoterpenes

Internal Transcribed Spacer 1 (ITS1 based sequence typing reveals phylogenetically distinct Ascaris population

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Koushik Das

2015-01-01

Full Text Available Taxonomic differentiation among morphologically identical Ascaris species is a debatable scientific issue in the context of Ascariasis epidemiology. To explain the disease epidemiology and also the taxonomic position of different Ascaris species, genome information of infecting strains from endemic areas throughout the world is certainly crucial. Ascaris population from human has been genetically characterized based on the widely used genetic marker, internal transcribed spacer1 (ITS1. Along with previously reported and prevalent genotype G1, 8 new sequence variants of ITS1 have been identified. Genotype G1 was significantly present among female patients aged between 10 to 15 years. Intragenic linkage disequilibrium (LD analysis at target locus within our study population has identified an incomplete LD value with potential recombination events. A separate cluster of Indian isolates with high bootstrap value indicate their distinct phylogenetic position in comparison to the global Ascaris population. Genetic shuffling through recombination could be a possible reason for high population diversity and frequent emergence of new sequence variants, identified in present and other previous studies. This study explores the genetic organization of Indian Ascaris population for the first time which certainly includes some fundamental information on the molecular epidemiology of Ascariasis.

Mass Spectrometry-Based Quantitative Metabolomics Revealed a Distinct Lipid Profile in Breast Cancer Patients

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Yun Yen

2013-04-01

Full Text Available Breast cancer accounts for the largest number of newly diagnosed cases in female cancer patients. Although mammography is a powerful screening tool, about 20% of breast cancer cases cannot be detected by this method. New diagnostic biomarkers for breast cancer are necessary. Here, we used a mass spectrometry-based quantitative metabolomics method to analyze plasma samples from 55 breast cancer patients and 25 healthy controls. A number of 30 patients and 20 age-matched healthy controls were used as a training dataset to establish a diagnostic model and to identify potential biomarkers. The remaining samples were used as a validation dataset to evaluate the predictive accuracy for the established model. Distinct separation was obtained from an orthogonal partial least squares-discriminant analysis (OPLS-DA model with good prediction accuracy. Based on this analysis, 39 differentiating metabolites were identified, including significantly lower levels of lysophosphatidylcholines and higher levels of sphingomyelins in the plasma samples obtained from breast cancer patients compared with healthy controls. Using logical regression, a diagnostic equation based on three metabolites (lysoPC a C16:0, PC ae C42:5 and PC aa C34:2 successfully differentiated breast cancer patients from healthy controls, with a sensitivity of 98.1% and a specificity of 96.0%.

Comprehensive genetic analyses reveal evolutionary distinction of a mouse (Zapus hudsonius preblei) proposed for delisting from the US Endangered Species Act.

Science.gov (United States)

King, Tim L; Switzer, John F; Morrison, Cheryl L; Eackles, Michael S; Young, Colleen C; Lubinski, Barbara A; Cryan, Paul

2006-12-01

Zapus hudsonius preblei, listed as threatened under the US Endangered Species Act (ESA), is one of 12 recognized subspecies of meadow jumping mice found in North America. Recent morphometric and phylogenetic comparisons among Z. h. preblei and neighbouring conspecifics questioned the taxonomic status of selected subspecies, resulting in a proposal to delist the Z. h. preblei from the ESA. We present additional analyses of the phylogeographic structure within Z. hudsonius that calls into question previously published data (and conclusions) and confirms the original taxonomic designations. A survey of 21 microsatellite DNA loci and 1380 base pairs from two mitochondrial DNA (mtDNA) regions (control region and cytochrome b) revealed that each Z. hudsonius subspecies is genetically distinct. These data do not support the null hypothesis of a homogeneous gene pool among the five subspecies found within the southwestern portion of the species' range. The magnitude of the observed differentiation was considerable and supported by significant findings for nearly every statistical comparison made, regardless of the genome or the taxa under consideration. Structuring of nuclear multilocus genotypes and subspecies-specific mtDNA haplotypes corresponded directly with the disjunct distributions of the subspecies investigated. Given the level of correspondence between the observed genetic population structure and previously proposed taxonomic classification of subspecies (based on the geographic separation and surveys of morphological variation), we conclude that the nominal subspecies surveyed in this study do not warrant synonymy, as has been proposed for Z. h. preblei, Z. h. campestris, and Z. h. intermedius.

1,25(OH)2 vitamin D3 binding sites in male sex organs of the Siberian hamster (Phodopus sungorus). An autoradiographic study

International Nuclear Information System (INIS)

Schleicher, G.; Bartke, A.; Bidmon, H.J.; Stumpf, W.E.

1993-01-01

Using autoradiography, binding sites for 1,25(OH)2 vitamin D3 are found in certain genital organs of male Siberian hamsters (Phodopus sungorus), in particular in basal epithelial cells and fibroblasts of the lamina propria of prostate glands. Scattered labeled cells are also present in the epithelium of coagulation and urethral glands. In contrast to the findings in mice, under the conditions of the experiment, 1,25(OH)2 vitamin D3 binding sites are not recognizable in other accessory sex glands and gonads. The frequency of basal epithelial cells with [3H]1,25(OH)2 vitamin D3 nuclear binding is higher in regressed dorsal prostate glands of animals living in short photoperiods. The data suggest that 1,25(OH)2 vitamin D3 may promote proliferation and differentiation in basal epithelial cells, modulated by the seasonal and functional status of the animal

Mortality of Siberian polecats and black-footed ferrets released onto prairie dog colonies

Science.gov (United States)

Biggins, D.E.; Miller, B.J.; Hanebury, L.R.; Powell, R.A.

2011-01-01

Black-footed ferrets (Mustela nigripes) likely were extirpated from the wild in 19851986, and their repatriation depends on captive breeding and reintroduction. Postrelease survival of animals can be affected by behavioral changes induced by captivity. We released neutered Siberian polecats (M. eversmanii), close relatives of ferrets, in 19891990 on black-tailed prairie dog (Cynomys ludovicianus) colonies in Colorado and Wyoming initially to test rearing and reintroduction techniques. Captive-born polecats were reared in cages or cages plus outdoor pens, released from elevated cages or into burrows, and supplementally fed or not fed. We also translocated wild-born polecats from China in 1990 and released captive-born, cage-reared black-footed ferrets in 1991, the 1st such reintroduction of black-footed ferrets. We documented mortality for 55 of 92 radiotagged animals in these studies, mostly due to predation (46 cases). Coyotes (Canis latrans) killed 31 ferrets and polecats. Supplementally fed polecats survived longer than nonprovisioned polecats. With a model based on deaths per distance moved, survival was highest for wild-born polecats, followed by pen-experienced, then cage-reared groups. Indexes of abundance (from spotlight surveys) for several predators were correlated with mortality rates of polecats and ferrets due to those predators. Released black-footed ferrets had lower survival rates than their ancestral population in Wyoming, and lower survival than wild-born and translocated polecats, emphasizing the influence of captivity. Captive-born polecats lost body mass more rapidly postrelease than did captive-born ferrets. Differences in hunting efficiency and prey selection provide further evidence that these polecats and ferrets are not ecological equivalents in the strict sense. ?? 2011 American Society of Mammalogists.

The neural signatures of distinct psychopathic traits.

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Carré, Justin M; Hyde, Luke W; Neumann, Craig S; Viding, Essi; Hariri, Ahmad R

2013-01-01

Recent studies suggest that psychopathy may be associated with dysfunction in the neural circuitry supporting both threat- and reward-related processes. However, these studies have involved small samples and often focused on extreme groups. Thus, it is unclear to what extent current findings may generalize to psychopathic traits in the general population. Furthermore, no studies have systematically and simultaneously assessed associations between distinct psychopathy facets and both threat- and reward-related brain function in the same sample of participants. Here, we examined the relationship between threat-related amygdala reactivity and reward-related ventral striatum (VS) reactivity and variation in four facets of self-reported psychopathy in a sample of 200 young adults. Path models indicated that amygdala reactivity to fearful facial expressions is negatively associated with the interpersonal facet of psychopathy, whereas amygdala reactivity to angry facial expressions is positively associated with the lifestyle facet. Furthermore, these models revealed that differential VS reactivity to positive versus negative feedback is negatively associated with the lifestyle facet. There was suggestive evidence for gender-specific patterns of association between brain function and psychopathy facets. Our findings are the first to document differential associations between both threat- and reward-related neural processes and distinct facets of psychopathy and thus provide a more comprehensive picture of the pattern of neural vulnerabilities that may predispose to maladaptive outcomes associated with psychopathy.

Modeling the large-scale effects of surface moisture heterogeneity on wetland carbon fluxes in the West Siberian Lowland

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T. J. Bohn

2013-10-01

Full Text Available We used a process-based model to examine the role of spatial heterogeneity of surface and sub-surface water on the carbon budget of the wetlands of the West Siberian Lowland over the period 1948–2010. We found that, while surface heterogeneity (fractional saturated area had little overall effect on estimates of the region's carbon fluxes, sub-surface heterogeneity (spatial variations in water table depth played an important role in both the overall magnitude and spatial distribution of estimates of the region's carbon fluxes. In particular, to reproduce the spatial pattern of CH4 emissions recorded by intensive in situ observations across the domain, in which very little CH4 is emitted north of 60° N, it was necessary to (a account for CH4 emissions from unsaturated wetlands and (b use spatially varying methane model parameters that reduced estimated CH4 emissions in the northern (permafrost half of the domain (and/or account for lower CH4 emissions under inundated conditions. Our results suggest that previous estimates of the response of these wetlands to thawing permafrost may have overestimated future increases in methane emissions in the permafrost zone.

The microbiome of Brazilian mangrove sediments as revealed by metagenomics

NARCIS (Netherlands)

Andreote, Fernando Dini; Jiménez Avella, Diego; Chaves, Diego; Dias, Armando Cavalcante Franco; Luvizotto, Danice Mazzer; Dini-Andreote, Francisco; Fasanella, Cristiane Cipola; Lopez, Maryeimy Varon; Baena, Sandra; Taketani, Rodrigo Gouvêa; de Melo, Itamar Soares

2012-01-01

Here we embark in a deep metagenomic survey that revealed the taxonomic and potential metabolic pathways aspects of mangrove sediment microbiology. The extraction of DNA from sediment samples and the direct application of pyrosequencing resulted in approximately 215 Mb of data from four distinct

Ultrasound Microbubble Treatment Enhances Clathrin-Mediated Endocytosis and Fluid-Phase Uptake through Distinct Mechanisms.

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Farnaz Fekri

Full Text Available Drug delivery to tumors is limited by several factors, including drug permeability of the target cell plasma membrane. Ultrasound in combination with microbubbles (USMB is a promising strategy to overcome these limitations. USMB treatment elicits enhanced cellular uptake of materials such as drugs, in part as a result of sheer stress and formation of transient membrane pores. Pores formed upon USMB treatment are rapidly resealed, suggesting that other processes such as enhanced endocytosis may contribute to the enhanced material uptake by cells upon USMB treatment. How USMB regulates endocytic processes remains incompletely understood. Cells constitutively utilize several distinct mechanisms of endocytosis, including clathrin-mediated endocytosis (CME for the internalization of receptor-bound macromolecules such as Transferrin Receptor (TfR, and distinct mechanism(s that mediate the majority of fluid-phase endocytosis. Tracking the abundance of TfR on the cell surface and the internalization of its ligand transferrin revealed that USMB acutely enhances the rate of CME. Total internal reflection fluorescence microscopy experiments revealed that USMB treatment altered the assembly of clathrin-coated pits, the basic structural units of CME. In addition, the rate of fluid-phase endocytosis was enhanced, but with delayed onset upon USMB treatment relative to the enhancement of CME, suggesting that the two processes are distinctly regulated by USMB. Indeed, vacuolin-1 or desipramine treatment prevented the enhancement of CME but not of fluid phase endocytosis upon USMB, suggesting that lysosome exocytosis and acid sphingomyelinase, respectively, are required for the regulation of CME but not fluid phase endocytosis upon USMB treatment. These results indicate that USMB enhances both CME and fluid phase endocytosis through distinct signaling mechanisms, and suggest that strategies for potentiating the enhancement of endocytosis upon USMB treatment may

Transgenic Mouse Lines Subdivide External Segment of the Globus Pallidus (GPe) Neurons and Reveal Distinct GPe Output Pathways

Science.gov (United States)

Mastro, Kevin J.; Bouchard, Rachel S.; Holt, Hiromi A. K.

2014-01-01

Cell-type diversity in the brain enables the assembly of complex neural circuits, whose organization and patterns of activity give rise to brain function. However, the identification of distinct neuronal populations within a given brain region is often complicated by a lack of objective criteria to distinguish one neuronal population from another. In the external segment of the globus pallidus (GPe), neuronal populations have been defined using molecular, anatomical, and electrophysiological criteria, but these classification schemes are often not generalizable across preparations and lack consistency even within the same preparation. Here, we present a novel use of existing transgenic mouse lines, Lim homeobox 6 (Lhx6)–Cre and parvalbumin (PV)–Cre, to define genetically distinct cell populations in the GPe that differ molecularly, anatomically, and electrophysiologically. Lhx6–GPe neurons, which do not express PV, are concentrated in the medial portion of the GPe. They have lower spontaneous firing rates, narrower dynamic ranges, and make stronger projections to the striatum and substantia nigra pars compacta compared with PV–GPe neurons. In contrast, PV–GPe neurons are more concentrated in the lateral portions of the GPe. They have narrower action potentials, deeper afterhyperpolarizations, and make stronger projections to the subthalamic nucleus and parafascicular nucleus of the thalamus. These electrophysiological and anatomical differences suggest that Lhx6–GPe and PV–GPe neurons participate in different circuits with the potential to contribute to different aspects of motor function and dysfunction in disease. PMID:24501350

Distinct neuronal coding schemes in memory revealed by selective erasure of fast synchronous synaptic transmission.

Science.gov (United States)

Xu, Wei; Morishita, Wade; Buckmaster, Paul S; Pang, Zhiping P; Malenka, Robert C; Südhof, Thomas C

2012-03-08

Neurons encode information by firing spikes in isolation or bursts and propagate information by spike-triggered neurotransmitter release that initiates synaptic transmission. Isolated spikes trigger neurotransmitter release unreliably but with high temporal precision. In contrast, bursts of spikes trigger neurotransmission reliably (i.e., boost transmission fidelity), but the resulting synaptic responses are temporally imprecise. However, the relative physiological importance of different spike-firing modes remains unclear. Here, we show that knockdown of synaptotagmin-1, the major Ca(2+) sensor for neurotransmitter release, abrogated neurotransmission evoked by isolated spikes but only delayed, without abolishing, neurotransmission evoked by bursts of spikes. Nevertheless, knockdown of synaptotagmin-1 in the hippocampal CA1 region did not impede acquisition of recent contextual fear memories, although it did impair the precision of such memories. In contrast, knockdown of synaptotagmin-1 in the prefrontal cortex impaired all remote fear memories. These results indicate that different brain circuits and types of memory employ distinct spike-coding schemes to encode and transmit information. Copyright © 2012 Elsevier Inc. All rights reserved.

A comparative study on Ca content and distribution in two Gesneriaceae species reveals distinctive mechanisms to cope with high rhizospheric soluble calcium

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Wenlong eLi

2014-11-01

Full Text Available Excessive Ca is toxic to plants thus significantly affects plant growth and species distribution in Ca-rich karst areas. To understand how plants survive high Ca soil, laboratory experiments were established to compare the physiological responses and internal Ca distribution in organ, tissue, cell and intracellular levels under different Ca levels for Lysionotus pauciflorus and Boea hygrometrica, two karst habitant Gesneriaceae species in Southwest China. In the controlled condition, L. pauciflorus could survive as high as 200 mM rhizospheric soluble Ca, attributed to a series of physiological responses and preferential storage that limited Ca accumulation in chloroplasts of palisade cells. In contrast, B. hygrometrica could survive only 20 mM rhizospheric soluble Ca, but accumulated a high level of internal Ca in both palisade and spongy cells without disturbance on photosynthetic activity. By phenotype screening of transgenic plants expressing high Ca-inducible genes from B. hygrometrica, the expression of BhDNAJC2 in A. thaliana was found to enhance plant growth and photosynthesis under high soluble Ca stress. BhDNAJC2 encodes a recently reported heat shock protein (HSP 40 family DnaJ-domain protein. The Ca-resistant phenotype of BhDNAJC2 highlights the important role of chaperone-mediated protein quality control in Ca tolerance in B. hygrometrica. Taken together, our results revealed that distinctive mechanisms were employed in the two Gesneriaceae karst habitants to cope with a high Ca environment.

Regional and landscape-scale variability of Landsat-observed vegetation dynamics in northwest Siberian tundra

International Nuclear Information System (INIS)

Frost, Gerald V; Epstein, Howard E; Walker, Donald A

2014-01-01

Widespread increases in Arctic tundra productivity have been documented for decades using coarse-scale satellite observations, but finer-scale observations indicate that changes have been very uneven, with a high degree of landscape- and regional-scale heterogeneity. Here we analyze time-series of the Normalized Difference Vegetation Index (NDVI) observed by Landsat (1984–2012), to assess landscape- and regional-scale variability of tundra vegetation dynamics in the northwest Siberian Low Arctic, a little-studied region with varied soils, landscape histories, and permafrost attributes. We also estimate spatio-temporal rates of land-cover change associated with expansion of tall alder (Alnus) shrublands, by integrating Landsat time-series with very-high-resolution imagery dating to the mid-1960s. We compiled Landsat time-series for eleven widely-distributed landscapes, and performed linear regression of NDVI values on a per-pixel basis. We found positive net NDVI trends (‘greening’) in nine of eleven landscapes. Net greening occurred in alder shrublands in all landscapes, and strong greening tended to correspond to shrublands that developed since the 1960s. Much of the spatial variability of greening within landscapes was linked to landscape physiography and permafrost attributes, while between-landscape variability largely corresponded to differences in surficial geology. We conclude that continued increases in tundra productivity in the region are likely in upland tundra landscapes with fine-textured, cryoturbated soils; these areas currently tend to support discontinuous vegetation cover, but are highly susceptible to rapid increases in vegetation cover, as well as land-cover changes associated with the development of tall shrublands. (paper)

The effect of microbial inocula on the growth of black locust, Siberian elm and silver maple seedlings

Directory of Open Access Journals (Sweden)

Hajnal-Jafari Timea

2014-01-01

Full Text Available Growth and development of forest plants depend mostly on the soil microbial activity since no mineral or organic fertilizers are applied. Microbial processes can be activated and conditions for plants development improved with the introduction of selected microorganisms in the soil. With the aim of obtaining quality planting material in a shorter period of time, the effects of Azotobacter chroococcum and Streptomyces sp. on the early growth of black locust (Robinia pseudoacacia, Siberian elm (Ulmus pumila and silver-leaf maple (Acer dasycarpum were investigated in this study. Microorganisms were applied individually and in a mixture (1:1. Plant height was measured on the 90th, 120th and 180th day after planting. Plant diameter, as well as the number of actinomycetes and azotobacters was measured at the end of the vegetation period (180 days after planting. Applied microorganisms had a positive effect on the seedling height in all three plant species, with the best effect found in the black locust. Effectiveness of applied microorganisms on seedling diameter was the highest in the silver-leaf maple. The largest number of azotobacters was found in the rhizosphere of black locust. Number of microorganisms from both groups was increased in the inoculated variants. [Projekat Ministarstva nauke Republike Srbije, br. III 43002

Distinctive Citizenship

DEFF Research Database (Denmark)

Kaur, Ravinder

2009-01-01

The refugee, in India's Partition history, appears as an enigmatic construct - part pitiful, part heroic, though mostly shorn of agency - representing the surface of the human tragedy of Partition. Yet this archetype masks the undercurrent of social distinctions that produced hierarchies of post...

Effects of Burn Severity and Environmental Conditions on Post-Fire Regeneration in Siberian Larch Forest

Directory of Open Access Journals (Sweden)

Thuan Chu

2017-03-01

Full Text Available Post-fire forest regeneration is strongly influenced by abiotic and biotic heterogeneity in the pre- and post-fire environments, including fire regimes, species characteristics, landforms, hydrology, regional climate, and soil properties. Assessing these drivers is key to understanding the long-term effects of fire disturbances on forest succession. We evaluated multiple factors influencing patterns of variability in a post-fire boreal Larch (Larix sibirica forest in Siberia. A time-series of remote sensing images was analyzed to estimate post-fire recovery as a response variable across the burned area in 1996. Our results suggested that burn severity and water content were primary controllers of both Larch forest recruitment and green vegetation cover as defined by the forest recovery index (FRI and the fractional vegetation cover (FVC, respectively. We found a high rate of Larch forest recruitment in sites of moderate burn severity, while a more severe burn was the preferable condition for quick occupation by vegetation that included early seral communities of shrubs, grasses, conifers and broadleaf trees. Sites close to water and that received higher solar energy during the summer months showed a higher rate of both recovery types, defined by the FRI and FVC, dependent on burn severity. In addition to these factors, topographic variables and pre-fire condition were important predictors of post-fire forest patterns. These results have direct implications for the post-fire forest management in the Siberian boreal Larch region.

Genetically distinct isolates of Spirocerca sp. from a naturally infected red fox (Vulpes vulpes) from Denmark

DEFF Research Database (Denmark)

Al-Sabi, Mohammad Nafi Solaiman; Hansen, Mette Sif; Chriél, Mariann

2014-01-01

sugar-salt solu-tion, and sieving failed to detect eggs of Spirocerca sp. in feces collected from the colon.This is the first report of spirocercosis in Denmark, and may have been caused by a recentintroduction by migrating paratenic or definitive host. Analysis of two overlapping par-tial sequences...... of the cox1 gene, from individual worms, revealed distinct genetic variation(7–9%) between the Danish worms and isolates of S. lupi from Europe, Asia and Africa.This was confirmed by phylogenetic analysis that clearly separated the Danish worms fromother isolates of S. lupi. The distinct genetic differences...

Distinct genetic diversity of Oncomelania hupensis, intermediate host of Schistosoma japonicum in mainland China as revealed by ITS sequences.

Directory of Open Access Journals (Sweden)

Qin Ping Zhao

Full Text Available BACKGROUND: Oncomelania hupensis is the unique intermediate host of Schistosoma japonicum, which causes schistosomiasis endemic in the Far East, and especially in mainland China. O. hupensis largely determines the parasite's geographical range. How O. hupensis's genetic diversity is distributed geographically in mainland China has never been well examined with DNA sequence data. METHODOLOGY/PRINCIPAL FINDINGS: In this study we investigate the genetic variation among O. hupensis from different geographical origins using the combined complete internal transcribed spacer 1 (ITS1 and ITS2 regions of nuclear ribosomal DNA. 165 O. hupensis isolates were obtained in 29 localities from 7 provinces across mainland China: lake/marshland and hill regions in Anhui, Hubei, Hunan, Jiangxi and Jiangsu provinces, located along the middle and lower reaches of Yangtze River, and mountainous regions in Sichuan and Yunnan provinces. Phylogenetic and haplotype network analyses showed distinct genetic diversity and no shared haplotypes between populations from lake/marshland regions of the middle and lower reaches of the Yangtze River and populations from mountainous regions of Sichuan and Yunnan provinces. The genetic distance between these two groups is up to 0.81 based on Fst, and branch time was estimated as 2-6 Ma. As revealed in the phylogenetic tree, snails from Sichuan and Yunnan provinces were also clustered separately. Geographical separation appears to be an important factor accounting for the diversification of the two groups of O. hupensis in mainland China, and probably for the separate clades between snails from Sichuan and Yunnan provinces. In lake/marshland and hill regions along the middle and lower reaches of the Yangtze River, three clades were identified in the phylogenetic tree, but without any obvious clustering of snails from different provinces. CONCLUSIONS: O. hupensis in mainland China may have considerable genetic diversity, and a more

The effects of cue distinctiveness on odor-based context-dependent memory.

Science.gov (United States)

Herz, R S

1997-05-01

The distinctiveness of an ambient odor was examined in relation to its success as a cue in context-dependent memory. Distinctiveness was examined in terms of both cue novelty and contextual appropriateness. Two experiments were conducted in which three different ambient odors that varied in familiarity and contextual appropriateness were manipulated at an incidental word learning encoding session and at a free recall retrieval session 48 h later. Experiment 1 revealed that when a novel ambient odor (osmanthus) was the available context cue, word recall was better than in any other condition. Further, among familiar odor cues, recall was better with a contextually inappropriate odor (peppermint) than with a contextually appropriate odor (clean fresh pine). Experiment 2 confirmed that superior word recall with osmanthus and peppermint depended on the odor cue's being available at both encoding and retrieval, and that the relation of an odor to the situational context is a key factor for predicting its effectiveness as a retrieval cue.

Transcranial magnetic stimulation reveals two functionally distinct stages of motor cortex involvement during perception of emotional body language.

Science.gov (United States)

Borgomaneri, Sara; Gazzola, Valeria; Avenanti, Alessio

2015-09-01

Studies indicate that perceiving emotional body language recruits fronto-parietal regions involved in action execution. However, the nature of such motor activation is unclear. Using transcranial magnetic stimulation (TMS) we provide correlational and causative evidence of two distinct stages of motor cortex engagement during emotion perception. Participants observed pictures of body expressions and categorized them as happy, fearful or neutral while receiving TMS over the left or right motor cortex at 150 and 300 ms after picture onset. In the early phase (150 ms), we observed a reduction of excitability for happy and fearful emotional bodies that was specific to the right hemisphere and correlated with participants' disposition to feel personal distress. This 'orienting' inhibitory response to emotional bodies was also paralleled by a general drop in categorization accuracy when stimulating the right but not the left motor cortex. Conversely, at 300 ms, greater excitability for negative, positive and neutral movements was found in both hemispheres. This later motor facilitation marginally correlated with participants' tendency to assume the psychological perspectives of others and reflected simulation of the movement implied in the neutral and emotional body expressions. These findings highlight the motor system's involvement during perception of emotional bodies. They suggest that fast orienting reactions to emotional cues--reflecting neural processing necessary for visual perception--occur before motor features of the observed emotional expression are simulated in the motor system and that distinct empathic dispositions influence these two neural motor phenomena. Implications for theories of embodied simulation are discussed.

Differential regulation of microtubule severing by APC underlies distinct patterns of projection neuron and interneuron migration

Science.gov (United States)

Eom, Tae-Yeon; Stanco, Amelia; Guo, Jiami; Wilkins, Gary; Deslauriers, Danielle; Yan, Jessica; Monckton, Chase; Blair, Josh; Oon, Eesim; Perez, Abby; Salas, Eduardo; Oh, Adrianna; Ghukasyan, Vladimir; Snider, William D.; Rubenstein, John L. R.; Anton, E. S.

2014-01-01

Coordinated migration of distinct classes of neurons to appropriate positions leads to the formation of functional neuronal circuitry in the cerebral cortex. Two major classes of cortical neurons, interneurons and projection neurons, utilize distinctly different modes (radial vs. tangential) and routes of migration to arrive at their final positions in the cerebral cortex. Here, we show that adenomatous polyposis coli (APC) modulates microtubule (MT) severing in interneurons to facilitate tangential mode of interneuron migration, but not the glial-guided, radial migration of projection neurons. APC regulates the stability and activity of the MT severing protein p60-katanin in interneurons to promote the rapid remodeling of neuronal processes necessary for interneuron migration. These findings reveal how severing and restructuring of MTs facilitate distinct modes of neuronal migration necessary for laminar organization of neurons in the developing cerebral cortex. PMID:25535916

Time-based forgetting in visual working memory reflects temporal distinctiveness, not decay

OpenAIRE

Souza Alessandra S.; Oberauer Klaus

2015-01-01

Is forgetting from working memory (WM) better explained by decay or interference? The answer to this question is the topic of an ongoing debate. Recently a number of studies showed that performance in tests of visual WM declines with an increasing unfilled retention interval. This finding was interpreted as revealing decay. Alternatively it can be explained by interference theories as an effect of temporal distinctiveness. According to decay theories forgetting depends on the absolute time el...

Archaeological Monuments of the Siberian Khanates: Search of the Markers of the Statehood.

Directory of Open Access Journals (Sweden)

S.F. Tataurov

2017-06-01

Full Text Available Research objectives: To identify several sets of archaeological materials, which allow to unite all the Turkic-Tatar population of the forest-steppe zone of Western Siberia not only on the basis of socio-economic relations, but also on the principles of the existence of state entities. Research materials: Archaeological material (ceramics, weapons and funeral rite of warriors, ring-seals and attributes of supreme authority – helmets and tamgas. Results and novelty of the research: At present, the Turkic-Tatar state formations remain one of the most poorly studied issues in the medieval history of Western Siberia. An unformed base of archaeological sources could be added to a small amount of written documents. As a result, academic community is not able to make a full description of specific khanates – of their boundaries, administrative division and management, the level of development of state institutions, etc. Moreover, we do not have a chronological scale of cultural layers of any archaeological complex of this time including the capitals of khanates – Chimgi-Tura and Isker. Ordinary settlements and cemeteries remain with indefinite characteristics (cultural phenomena, which could allow to combine all these complexes into one whole, to become markers of the Siberian statehood. The author proposes to identify several sets of archaeological materials, which allow to unite all the Turkic-Tatar population of the forest-steppe zone of Western Siberia not only on the basis of socio-economic relations, but also on the principles of the existence of state entities. The author presents as these features ceramics, weapons and funeral rite of warriors, ring-seals and attributes of supreme authority – helmets and tamgas. It is possible that in the course of research this range of sources can be increased. Therefore, this work serves as an impulse for the development of scientific research in this direction.

West Siberian Basin hydrogeology: Site characterization of Mayak, Tomsk-7, and Krasnoyarsk-26

International Nuclear Information System (INIS)

Hoover, K.A.; Foley, M.G.; Allen, E.A.; Alexander, L.J.; McKinley, M.I.

1997-01-01

The former Soviet Union has extensive defense-related nuclear production facilities that have released large amounts of hazardous and radioactive waste materials into the air, surface water, and ground water in areas surrounding the production sites. The key sites of concern are Mayak, Tomsk-7, and Krasnoyarsk-26, all located within the West siberian Basin. The Pacific Northwest National Laboratory (PNNL), in cooperation with the Russian Ministry of Atomic Energy (Minatom), has been conducted contaminant-migration studies of Mayak, Tomsk-7, and Krasnoyarsk-26 in Western Siberia since 1993. The intent of this program is to maximize use of US and Russian site characterization, contaminant transport modeling, and remediation technology for the benefit of DOE and Minatom site-cleanup activities. Site characterization activities conducted during FY 1996 comprised evaluating the existing database, developing methods for synthesizing missing data, and designing an effective means of data and technology transfer. Comparison of the database, most of the contents of which have been acquired remotely with contaminant transport modeling data requirements allowed the authors to evaluate the utility of data acquired remotely for modeling purposes, and to identify gaps in the characterization of Russian waste-disposal sites. Identifying these gaps led to the second activity, which was to develop methods for synthesizing missing data from an evaluation of existing data. The authors tested these methods by evaluating geologic fracturing at the Mayak site. The third activity was the development of an effective procedure for data and technology transfer. The goal was to provide the site characterization database to Russian modelers in such a way that the data were easily transported, viewed, and manipulated for use in their models. This report summarizes the results of the three site characterization activities performed during FY 1996

Genomic profiling of rice sperm cell transcripts reveals conserved and distinct elements in the flowering plant male germ lineage.

Science.gov (United States)

Russell, Scott D; Gou, Xiaoping; Wong, Chui E; Wang, Xinkun; Yuan, Tong; Wei, Xiaoping; Bhalla, Prem L; Singh, Mohan B

2012-08-01

Genomic assay of sperm cell RNA provides insight into functional control, modes of regulation, and contributions of male gametes to double fertilization. Sperm cells of rice (Oryza sativa) were isolated from field-grown, disease-free plants and RNA was processed for use with the full-genome Affymetrix microarray. Comparison with Gene Expression Omnibus (GEO) reference arrays confirmed expressionally distinct gene profiles. A total of 10,732 distinct gene sequences were detected in sperm cells, of which 1668 were not expressed in pollen or seedlings. Pathways enriched in male germ cells included ubiquitin-mediated pathways, pathways involved in chromatin modeling including histones, histone modification and nonhistone epigenetic modification, and pathways related to RNAi and gene silencing. Genome-wide expression patterns in angiosperm sperm cells indicate common and divergent themes in the male germline that appear to be largely self-regulating through highly up-regulated chromatin modification pathways. A core of highly conserved genes appear common to all sperm cells, but evidence is still emerging that another class of genes have diverged in expression between monocots and dicots since their divergence. Sperm cell transcripts present at fusion may be transmitted through plasmogamy during double fertilization to effect immediate post-fertilization expression of early embryo and (or) endosperm development. © 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.

Distinct configurations of protein complexes and biochemical pathways revealed by epistatic interaction network motifs

LENUS (Irish Health Repository)

Casey, Fergal

2011-08-22

Abstract Background Gene and protein interactions are commonly represented as networks, with the genes or proteins comprising the nodes and the relationship between them as edges. Motifs, or small local configurations of edges and nodes that arise repeatedly, can be used to simplify the interpretation of networks. Results We examined triplet motifs in a network of quantitative epistatic genetic relationships, and found a non-random distribution of particular motif classes. Individual motif classes were found to be associated with different functional properties, suggestive of an underlying biological significance. These associations were apparent not only for motif classes, but for individual positions within the motifs. As expected, NNN (all negative) motifs were strongly associated with previously reported genetic (i.e. synthetic lethal) interactions, while PPP (all positive) motifs were associated with protein complexes. The two other motif classes (NNP: a positive interaction spanned by two negative interactions, and NPP: a negative spanned by two positives) showed very distinct functional associations, with physical interactions dominating for the former but alternative enrichments, typical of biochemical pathways, dominating for the latter. Conclusion We present a model showing how NNP motifs can be used to recognize supportive relationships between protein complexes, while NPP motifs often identify opposing or regulatory behaviour between a gene and an associated pathway. The ability to use motifs to point toward underlying biological organizational themes is likely to be increasingly important as more extensive epistasis mapping projects in higher organisms begin.

Whole-genome sequence of a novel Chinese cyprinid herpesvirus 3 isolate reveals the existence of a distinct European genotype in East Asia.

Science.gov (United States)

Li, Wei; Lee, Xuezhu; Weng, Shaoping; He, Jianguo; Dong, Chuanfu

2015-02-25

Cyprinid herpesvirus 3 (CyHV3), also known as koi herpesvirus (KHV), can be subdivided primarily into European and Asian genotypes, which are represented by CyHV3-U or CyHV3-I and CyHV3-J, respectively. In this study, the whole genome sequence of a novel Chinese CyHV3 isolate (GZ11) was determined and annotated. CyHV3-GZ11 genome was found to contain 295,119 nucleotides with 52.9% G/C content, which is highly similar to those of published CyHV3-U, CyHV3-I, and CyHV3-J strains. With reference to CyHV3-U, CyHV3-I, and CyHV3-J, CyHV3-GZ11 was also classified into 164 open reading frames (ORF), which include eight repeated ORFs. On the basis of the 12 alloherpeviruses core genes, results from phylogenetic analysis showed that CyHV3-GZ11 had closer evolutionary relationships with CyHV3-U and CyHV3-I than with CyHV3/KHV-J, which were also supported by genome wide-based single nucleotide substitution analysis and the use of a series of developed molecular markers. This study was the first to reveal the presence of a distinct European CyHV3 genotype in East and Southeast Asia at a whole genome level, which will evoke new insights on exploring the origin, evolution, and epidemiology of the virus. Copyright © 2014 Elsevier B.V. All rights reserved.

Counselor Identity: Conformity or Distinction?

Science.gov (United States)

McLaughlin, Jerry E.; Boettcher, Kathryn

2009-01-01

The authors explore 3 debates in other disciplines similar to counseling's identity debate in order to learn about common themes and outcomes. Conformity, distinction, and cohesion emerged as common themes. They conclude that counselors should retain their distinctive, humanistic approach rather than conforming to the dominant, medical approach.

Aboveground Biomass Monitoring over Siberian Boreal Forest Using Radar Remote Sensing Data

Science.gov (United States)

Stelmaszczuk-Gorska, M. A.; Thiel, C. J.; Schmullius, C.

2014-12-01

Aboveground biomass (AGB) plays an essential role in ecosystem research, global cycles, and is of vital importance in climate studies. AGB accumulated in the forests is of special monitoring interest as it contains the most of biomass comparing with other land biomes. The largest of the land biomes is boreal forest, which has a substantial carbon accumulation capability; carbon stock estimated to be 272 +/-23 Pg C (32%) [1]. Russian's forests are of particular concern, due to the largest source of uncertainty in global carbon stock calculations [1], and old inventory data that have not been updated in the last 25 years [2]. In this research new empirical models for AGB estimation are proposed. Using radar L-band data for AGB retrieval and optical data for an update of in situ data the processing scheme was developed. The approach was trained and validated in the Asian part of the boreal forest, in southern Russian Central Siberia; two Siberian Federal Districts: Krasnoyarsk Kray and Irkutsk Oblast. Together the training and testing forest territories cover an area of approximately 3,500 km2. ALOS PALSAR L-band single (HH - horizontal transmitted and received) and dual (HH and HV - horizontal transmitted, horizontal and vertical received) polarizations in Single Look Complex format (SLC) were used to calculate backscattering coefficient in gamma nought and coherence. In total more than 150 images acquired between 2006 and 2011 were available. The data were obtained through the ALOS Kyoto and Carbon Initiative Project (K&C). The data were used to calibrate a randomForest algorithm. Additionally, a simple linear and multiple-regression approach was used. The uncertainty of the AGB estimation at pixel and stand level were calculated approximately as 35% by validation against an independent dataset. The previous studies employing ALOS PALSAR data over boreal forests reported uncertainty of 39.4% using randomForest approach [2] or 42.8% using semi-empirical approach [3].

Regeneration patterns in boreal Scots pine glades linked to cold-induced photoinhibition

NARCIS (Netherlands)

Slot, M.; Wirth, C.; Schumacher, J.; Mohren, G.M.J.; Shibistova, O.; Lloyd, J.; Ensminger, I.

2005-01-01

Summary Regeneration patterns of Pinus sylvestris L. juveniles in central Siberian glades were studied in relation to cold-induced photoinhibition. Spatial distribution of seedlings in different height classes revealed higher seedling densities beneath the canopy than beyond the canopy, and

MicroRNA transfection and AGO-bound CLIP-seq data sets reveal distinct determinants of miRNA action

DEFF Research Database (Denmark)

Wen, Jiayu; Parker, Brian J; Jacobsen, Anders

2011-01-01

the predictive effect of target flanking features. We observe distinct target determinants between expression-based and CLIP-based data. Target flanking features such as flanking region conservation are an important AGO-binding determinant-we hypothesize that CLIP experiments have a preference for strongly bound......Microarray expression analyses following miRNA transfection/inhibition and, more recently, Argonaute cross-linked immunoprecipitation (CLIP)-seq assays have been used to detect miRNA target sites. CLIP and expression approaches measure differing stages of miRNA functioning-initial binding of the mi...... miRNP-target interactions involving adjacent RNA-binding proteins that increase the strength of cross-linking. In contrast, seed-related features are major determinants in expression-based studies, but less so for CLIP-seq studies, and increased miRNA concentrations typical of transfection studies...

Comparative transcriptome analysis reveals distinct ethylene-independent regulation of ripening in response to low temperature in kiwifruit.

Science.gov (United States)

Asiche, William O; Mitalo, Oscar W; Kasahara, Yuka; Tosa, Yasuaki; Mworia, Eric G; Owino, Willis O; Ushijima, Koichiro; Nakano, Ryohei; Yano, Kentaro; Kubo, Yasutaka

2018-03-21

Kiwifruit are classified as climacteric since exogenous ethylene (or its analogue propylene) induces rapid ripening accompanied by ethylene production under positive feedback regulation. However, most of the ripening-associated changes (Phase 1 ripening) in kiwifruit during storage and on-vine occur largely in the absence of any detectable ethylene. This ripening behavior is often attributed to basal levels of system I ethylene, although it is suggested to be modulated by low temperature. To elucidate the mechanisms regulating Phase 1 ripening in kiwifruit, a comparative transcriptome analysis using fruit continuously exposed to propylene (at 20 °C), and during storage at 5 °C and 20 °C was conducted. Propylene exposure induced kiwifruit softening, reduction of titratable acidity (TA), increase in soluble solids content (SSC) and ethylene production within 5 days. During storage, softening and reduction of TA occurred faster in fruit at 5 °C compared to 20 °C although no endogenous ethylene production was detected. Transcriptome analysis revealed 3761 ripening-related differentially expressed genes (DEGs), of which 2742 were up-regulated by propylene while 1058 were up-regulated by low temperature. Propylene exclusively up-regulated 2112 DEGs including those associated with ethylene biosynthesis and ripening such as AcACS1, AcACO2, AcPL1, AcXET1, Acβ-GAL, AcAAT, AcERF6 and AcNAC7. Similarly, low temperature exclusively up-regulated 467 DEGS including AcACO3, AcPL2, AcPMEi, AcADH, Acβ-AMY2, AcGA2ox2, AcNAC5 and AcbZIP2 among others. A considerable number of DEGs such as AcPG, AcEXP1, AcXET2, Acβ-AMY1, AcGA2ox1, AcNAC6, AcMADS1 and AcbZIP1 were up-regulated by either propylene or low temperature. Frequent 1-MCP treatments failed to inhibit the accelerated ripening and up-regulation of associated DEGs by low temperature indicating that the changes were independent of ethylene. On-vine kiwifruit ripening proceeded in the absence of any detectable

Coexistence of two distinct Sulfurospirillum populations respiring tetrachloroethene - genomic and kinetic considerations

DEFF Research Database (Denmark)

Buttet, Géraldine Florence; Murray, Alexandra Marie; Goris, Tobias

2018-01-01

Two anaerobic bacterial consortia, each harboring a distinct Sulfurospirillum population, were derived from a ten year old consortium, SL2, previously characterized for the stepwise dechlorination of tetrachloroethene (PCE) to cis-dichloroethene (cis-DCE) via accumulation of trichloroethene (TCE......). Population SL2-1 dechlorinated PCE to TCE exclusively, while SL2-2 produced cis-DCE from PCE without substantial TCE accumulation. The reasons explaining the long-term coexistence of the populations were investigated. Genome sequencing revealed a novel Sulfurospirillum species, designated 'Candidatus...

Neuropeptidomics Mass Spectrometry Reveals Signaling Networks Generated by Distinct Protease Pathways in Human Systems

Science.gov (United States)

Hook, Vivian; Bandeira, Nuno

2015-12-01

Neuropeptides regulate intercellular signaling as neurotransmitters of the central and peripheral nervous systems, and as peptide hormones in the endocrine system. Diverse neuropeptides of distinct primary sequences of various lengths, often with post-translational modifications, coordinate and integrate regulation of physiological functions. Mass spectrometry-based analysis of the diverse neuropeptide structures in neuropeptidomics research is necessary to define the full complement of neuropeptide signaling molecules. Human neuropeptidomics has notable importance in defining normal and dysfunctional neuropeptide signaling in human health and disease. Neuropeptidomics has great potential for expansion in translational research opportunities for defining neuropeptide mechanisms of human diseases, providing novel neuropeptide drug targets for drug discovery, and monitoring neuropeptides as biomarkers of drug responses. In consideration of the high impact of human neuropeptidomics for health, an observed gap in this discipline is the few published articles in human neuropeptidomics compared with, for example, human proteomics and related mass spectrometry disciplines. Focus on human neuropeptidomics will advance new knowledge of the complex neuropeptide signaling networks participating in the fine control of neuroendocrine systems. This commentary review article discusses several human neuropeptidomics accomplishments that illustrate the rapidly expanding diversity of neuropeptides generated by protease processing of pro-neuropeptide precursors occurring within the secretory vesicle proteome. Of particular interest is the finding that human-specific cathepsin V participates in producing enkephalin and likely other neuropeptides, indicating unique proteolytic mechanisms for generating human neuropeptides. The field of human neuropeptidomics has great promise to solve new mechanisms in disease conditions, leading to new drug targets and therapeutic agents for human

Permafrost and lakes control river isotope composition across a boreal Arctic transect in the Western Siberian lowlands

Science.gov (United States)

Ala-aho, P.; Soulsby, C.; Pokrovsky, O. S.; Kirpotin, S. N.; Karlsson, J.; Serikova, S.; Manasypov, R.; Lim, A.; Krickov, I.; Kolesnichenko, L. G.; Laudon, H.; Tetzlaff, D.

2018-03-01

The Western Siberian Lowlands (WSL) store large quantities of organic carbon that will be exposed and mobilized by the thawing of permafrost. The fate of mobilized carbon, however, is not well understood, partly because of inadequate knowledge of hydrological controls in the region which has a vast low-relief surface area, extensive lake and wetland coverage and gradually increasing permafrost influence. We used stable water isotopes to improve our understanding of dominant landscape controls on the hydrology of the WSL. We sampled rivers along a 1700 km South-North transect from permafrost-free to continuous permafrost repeatedly over three years, and derived isotope proxies for catchment hydrological responsiveness and connectivity. We found correlations between the isotope proxies and catchment characteristics, suggesting that lakes and wetlands are intimately connected to rivers, and that permafrost increases the responsiveness of the catchment to rainfall and snowmelt events, reducing catchment mean transit times. Our work provides rare isotope-based field evidence that permafrost and lakes/wetlands influence hydrological pathways across a wide range of spatial scales (10-105 km2) and permafrost coverage (0%-70%). This has important implications, because both permafrost extent and lake/wetland coverage are affected by permafrost thaw in the changing climate. Changes in these hydrological landscape controls are likely to alter carbon export and emission via inland waters, which may be of global significance.

Transmission and adaptation of chronic wasting disease to hamsters and transgenic mice: evidence for strains.

Science.gov (United States)

Raymond, Gregory J; Raymond, Lynne D; Meade-White, Kimberly D; Hughson, Andrew G; Favara, Cynthia; Gardner, Donald; Williams, Elizabeth S; Miller, Michael W; Race, Richard E; Caughey, Byron

2007-04-01

In vitro screening using the cell-free prion protein conversion system indicated that certain rodents may be susceptible to chronic wasting disease (CWD). Therefore, CWD isolates from mule deer, white-tailed deer, and elk were inoculated intracerebrally into various rodent species to assess the rodents' susceptibility and to develop new rodent models of CWD. The species inoculated were Syrian golden, Djungarian, Chinese, Siberian, and Armenian hamsters, transgenic mice expressing the Syrian golden hamster prion protein, and RML Swiss and C57BL10 wild-type mice. The transgenic mice and the Syrian golden, Chinese, Siberian, and Armenian hamsters had limited susceptibility to certain of the CWD inocula, as evidenced by incomplete attack rates and long incubation periods. For serial passages of CWD isolates in Syrian golden hamsters, incubation periods rapidly stabilized, with isolates having either short (85 to 89 days) or long (408 to 544 days) mean incubation periods and distinct neuropathological patterns. In contrast, wild-type mouse strains and Djungarian hamsters were not susceptible to CWD. These results show that CWD can be transmitted and adapted to some species of rodents and suggest that the cervid-derived CWD inocula may have contained or diverged into at least two distinct transmissible spongiform encephalopathy strains.

Menzerath-Altmann law for distinct word distribution analysis in a large text

Science.gov (United States)

Eroglu, Sertac

2013-06-01

The empirical law uncovered by Menzerath and formulated by Altmann, known as the Menzerath-Altmann law (henceforth the MA law), reveals the statistical distribution behavior of human language in various organizational levels. Building on previous studies relating organizational regularities in a language, we propose that the distribution of distinct (or different) words in a large text can effectively be described by the MA law. The validity of the proposition is demonstrated by examining two text corpora written in different languages not belonging to the same language family (English and Turkish). The results show not only that distinct word distribution behavior can accurately be predicted by the MA law, but that this result appears to be language-independent. This result is important not only for quantitative linguistic studies, but also may have significance for other naturally occurring organizations that display analogous organizational behavior. We also deliberately demonstrate that the MA law is a special case of the probability function of the generalized gamma distribution.

Virus Infection Triggers MAVS Polymers of Distinct Molecular Weight

Directory of Open Access Journals (Sweden)

Natalia Zamorano Cuervo

2018-01-01

Full Text Available The mitochondrial antiviral signaling (MAVS adaptor protein is a central signaling hub required for cells to mount an antiviral response following virus sensing by retinoic acid-inducible gene I (RIG-I-like receptors. MAVS localizes in the membrane of mitochondria and peroxisomes and in mitochondrial-associated endoplasmic reticulum membranes. Structural and functional studies have revealed that MAVS activity relies on the formation of functional high molecular weight prion-like aggregates. The formation of protein aggregates typically relies on a dynamic transition between oligomerization and aggregation states. The existence of intermediate state(s of MAVS polymers, other than aggregates, has not yet been documented. Here, we used a combination of non-reducing SDS-PAGE and semi-denaturing detergent agarose gel electrophoresis (SDD-AGE to resolve whole cell extract preparations to distinguish MAVS polymerization states. While SDD-AGE analysis of whole cell extracts revealed the formation of previously described high molecular weight prion-like aggregates upon constitutively active RIG-I ectopic expression and virus infection, non-reducing SDS-PAGE allowed us to demonstrate the induction of lower molecular weight oligomers. Cleavage of MAVS using the NS3/4A protease revealed that anchoring to intracellular membranes is required for the appropriate polymerization into active high molecular weight aggregates. Altogether, our data suggest that RIG-I-dependent MAVS activation involves the coexistence of MAVS polymers with distinct molecular weights.

Co-circulation of multiple hemorrhagic fever diseases with distinct clinical characteristics in Dandong, China.

Directory of Open Access Journals (Sweden)

Zhi-Hai Chen

Full Text Available Hemorrhagic fevers (HF caused by viruses and bacteria are a major public health problem in China and characterized by variable clinical manifestations, such that it is often difficult to achieve accurate diagnosis and treatment. The causes of HF in 85 patients admitted to Dandong hospital, China, between 2011-2012 were determined by serological and PCR tests. Of these, 34 patients were diagnosed with Huaiyangshan hemorrhagic fever (HYSHF, 34 with Hemorrhagic Fever with Renal Syndrome (HFRS, one with murine typhus, and one with scrub typhus. Etiologic agents could not be determined in the 15 remaining patients. Phylogenetic analyses of recovered bacterial and viral sequences revealed that the causative infectious agents were closely related to those described in other geographical regions. As these diseases have no distinctive clinical features in their early stage, only 13 patients were initially accurately diagnosed. The distinctive clinical features of HFRS and HYSHF developed during disease progression. Enlarged lymph nodes, cough, sputum, and diarrhea were more common in HYSHF patients, while more HFRS cases presented with headache, sore throat, oliguria, percussion pain kidney area, and petechiae. Additionally, HYSHF patients displayed significantly lower levels of white blood cells (WBC, higher levels of creations kinase (CK and alanine aminotransferase (ALT, while HFRS patients presented with an elevation of blood urea nitrogen (BUN and creatinine (CREA. These clinical features will assist in the accurate diagnosis of both HYSHF and HFRS. Overall, our data reveal the complexity of pathogens causing HFs in a single Chinese hospital, and highlight the need for accurate early diagnosis and a better understanding of their distinctive clinical features.

The pursuit of optimal distinctiveness and consumer preferences.

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He, Lingnan; Cong, Feng; Liu, Yanping; Zhou, Xinyue

2010-10-01

This article investigates the effect of optimal distinctiveness on consumer product consumption. The authors argue that consumers acquire and display material possessions to restore their optimal levels of distinctiveness. Results showed that placing consumers in a state of low distinctiveness increased desire to acquire distinctive products, whereas perceptions of high distinctiveness reduced desire to acquire such products. Consumers' desire for distinctiveness-related products held true for various consumer choices, including willingness to pay more for limited-edition products and preference for unpopular gifts. This finding has implications for understanding consumer choice in expressing identity. © 2010 The Authors. Scandinavian Journal of Psychology © 2010 The Scandinavian Psychological Associations.

Gene expression profiling reveals distinct molecular signatures associated with the rupture of intracranial aneurysm.

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Nakaoka, Hirofumi; Tajima, Atsushi; Yoneyama, Taku; Hosomichi, Kazuyoshi; Kasuya, Hidetoshi; Mizutani, Tohru; Inoue, Ituro

2014-08-01

The rupture of intracranial aneurysm (IA) causes subarachnoid hemorrhage associated with high morbidity and mortality. We compared gene expression profiles in aneurysmal domes between unruptured IAs and ruptured IAs (RIAs) to elucidate biological mechanisms predisposing to the rupture of IA. We determined gene expression levels of 8 RIAs, 5 unruptured IAs, and 10 superficial temporal arteries with the Agilent microarrays. To explore biological heterogeneity of IAs, we classified the samples into subgroups showing similar gene expression patterns, using clustering methods. The clustering analysis identified 4 groups: superficial temporal arteries and unruptured IAs were aggregated into their own clusters, whereas RIAs segregated into 2 distinct subgroups (early and late RIAs). Comparing gene expression levels between early RIAs and unruptured IAs, we identified 430 upregulated and 617 downregulated genes in early RIAs. The upregulated genes were associated with inflammatory and immune responses and phagocytosis including S100/calgranulin genes (S100A8, S100A9, and S100A12). The downregulated genes suggest mechanical weakness of aneurysm walls. The expressions of Krüppel-like family of transcription factors (KLF2, KLF12, and KLF15), which were anti-inflammatory regulators, and CDKN2A, which was located on chromosome 9p21 that was the most consistently replicated locus in genome-wide association studies of IA, were also downregulated. We demonstrate that gene expression patterns of RIAs were different according to the age of patients. The results suggest that macrophage-mediated inflammation is a key biological pathway for IA rupture. The identified genes can be good candidates for molecular markers of rupture-prone IAs and therapeutic targets. © 2014 American Heart Association, Inc.

Are empathy and concern psychologically distinct?

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Jordan, Matthew R; Amir, Dorsa; Bloom, Paul

2016-12-01

Researchers have long been interested in the relationship between feeling what you believe others feel-often described as empathy-and caring about the welfare of others-often described as compassion or concern. Many propose that empathy is a prerequisite for concern and is therefore the ultimate motivator of prosocial actions. To assess this hypothesis, the authors developed the Empathy Index, which consists of 2 novel scales, and explored their relationship to a measure of concern as well as to measures of cooperative and altruistic behavior. A series of factor analyses reveal that empathy and concern consistently load on different factors. Furthermore, they show that empathy and concern motivate different behaviors: concern for others is a uniquely positive predictor of prosocial action whereas empathy is either not predictive or negatively predictive of prosocial actions. Together these studies suggest that empathy and concern are psychologically distinct and empathy plays a more limited role in our moral lives than many believe. (PsycINFO Database Record (c) 2016 APA, all rights reserved).

Iceberg and meltwater discharge events in the western Arctic Ocean since MIS 5: a comparison of sediment cores off the East Siberian and Chukchi margins

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Xiao, W.; Wang, R.; Zhang, T.; Duan, X.; Polyak, L.

2017-12-01

In the Pleistocene the western Arctic Ocean was affected by deglacial discharge events from ice sheets in northern North America as well as the East Siberian and Chukchi margins. Distribution of Ice Rafted Debris (IRD) >250 μm and planktonic foraminiferal N. pachyderma (sin.) (Nps) δ18O and δ13C was compared in CHINARE sediment cores ARC2-M03 (Wang et al., 2013) and ARC3-P37 from the Chukchi Abyssal Plain and Northwind Ridge, respectively, to identify the impacts of icebergs and meltwater on paleoceanographic environments since MIS 5. The IRD is mainly composed of quartz grains and fragments of clastic rocks and detrital carbonates. The carbonates, mostly dolomites characteristic of the Canadian Arctic Archipelago (CAA) provenance, typically anti-correlate with quartz and clastic rocks, indicating different sources such as Chukchi-Alaskan or East Siberian margin. Most of the Nps δ18O depletions correspond to peaks in detrital carbonates, suggesting a strong influence of meltwater from the Laurentide Ice Sheet (LIS) on the western Arctic Ocean. A conspicuous dark gray interval interpreted to represent glacial/deglacial environments of MIS 4/3 age, shows a remarkable depletion in Nps δ13C along with high δ18O values and absence of IRD. This unusual signature may be related to a persistent sea-ice cover and/or high fluxes of terrigenous material with deglacial debris flows. In a younger grey interval corresponding to MIS2, high abundances of quartz and clastic rocks in the Northwind Ridge core ARC3-P37 indicate iceberg discharge from areas other than CAA, such as the Mackenzie LIS lobe or Chukchi-Alaskan margin. The MIS2-Holocene transition is marked by an increase in detrital carbonates co-occurring with Nps δ13C and δ18O depletion (Polyak et al., 2007), indicative of LIS iceberg/meltwater fluxes from the CAA. We note that stable-isotope events in the study area may go unnoticed because of gaps in foraminiferal records related to dissolution and/or adverse

The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes

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Lemieux Claude

2006-02-01

Full Text Available Abstract Background The phylum Chlorophyta contains the majority of the green algae and is divided into four classes. The basal position of the Prasinophyceae has been well documented, but the divergence order of the Ulvophyceae, Trebouxiophyceae and Chlorophyceae is currently debated. The four complete chloroplast DNA (cpDNA sequences presently available for representatives of these classes have revealed extensive variability in overall structure, gene content, intron composition and gene order. The chloroplast genome of Pseudendoclonium (Ulvophyceae, in particular, is characterized by an atypical quadripartite architecture that deviates from the ancestral type by a large inverted repeat (IR featuring an inverted rRNA operon and a small single-copy (SSC region containing 14 genes normally found in the large single-copy (LSC region. To gain insights into the nature of the events that led to the reorganization of the chloroplast genome in the Ulvophyceae, we have determined the complete cpDNA sequence of Oltmannsiellopsis viridis, a representative of a distinct, early diverging lineage. Results The 151,933 bp IR-containing genome of Oltmannsiellopsis differs considerably from Pseudendoclonium and other chlorophyte cpDNAs in intron content and gene order, but shares close similarities with its ulvophyte homologue at the levels of quadripartite architecture, gene content and gene density. Oltmannsiellopsis cpDNA encodes 105 genes, contains five group I introns, and features many short dispersed repeats. As in Pseudendoclonium cpDNA, the rRNA genes in the IR are transcribed toward the single copy region featuring the genes typically found in the ancestral LSC region, and the opposite single copy region harbours genes characteristic of both the ancestral SSC and LSC regions. The 52 genes that were transferred from the ancestral LSC to SSC region include 12 of those observed in Pseudendoclonium cpDNA. Surprisingly, the overall gene organization of

Genetic Structuration, Demography and Evolutionary History of Mycobacterium tuberculosis LAM9 Sublineage in the Americas as Two Distinct Subpopulations Revealed by Bayesian Analyses

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Reynaud, Yann; Millet, Julie; Rastogi, Nalin

2015-01-01

Tuberculosis (TB) remains broadly present in the Americas despite intense global efforts for its control and elimination. Starting from a large dataset comprising spoligotyping (n = 21183 isolates) and 12-loci MIRU-VNTRs data (n = 4022 isolates) from a total of 31 countries of the Americas (data extracted from the SITVIT2 database), this study aimed to get an overview of lineages circulating in the Americas. A total of 17119 (80.8%) strains belonged to the Euro-American lineage 4, among which the most predominant genotypic family belonged to the Latin American and Mediterranean (LAM) lineage (n = 6386, 30.1% of strains). By combining classical phylogenetic analyses and Bayesian approaches, this study revealed for the first time a clear genetic structuration of LAM9 sublineage into two subpopulations named LAM9C1 and LAM9C2, with distinct genetic characteristics. LAM9C1 was predominant in Chile, Colombia and USA, while LAM9C2 was predominant in Brazil, Dominican Republic, Guadeloupe and French Guiana. Globally, LAM9C2 was characterized by higher allelic richness as compared to LAM9C1 isolates. Moreover, LAM9C2 sublineage appeared to expand close to twenty times more than LAM9C1 and showed older traces of expansion. Interestingly, a significant proportion of LAM9C2 isolates presented typical signature of ancestral LAM-RDRio MIRU-VNTR type (224226153321). Further studies based on Whole Genome Sequencing of LAM strains will provide the needed resolution to decipher the biogeographical structure and evolutionary history of this successful family. PMID:26517715

Thermal Properties of West Siberian Sediments in Application to Basin and Petroleum Systems Modeling

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Romushkevich, Raisa; Popov, Evgeny; Popov, Yury; Chekhonin, Evgeny; Myasnikov, Artem; Kazak, Andrey; Belenkaya, Irina; Zagranovskaya, Dzhuliya

2016-04-01

Quality of heat flow and rock thermal property data is the crucial question in basin and petroleum system modeling. A number of significant deviations in thermal conductivity values were observed during our integral geothermal study of West Siberian platform reporting that the corrections should be carried out in basin models. The experimental data including thermal anisotropy and heterogeneity measurements were obtained along of more than 15 000 core samples and about 4 500 core plugs. The measurements were performed in 1993-2015 with the optical scanning technique within the Continental Super-Deep Drilling Program (Russia) for scientific super-deep well Tyumenskaya SG-6, parametric super-deep well Yen-Yakhinskaya, and deep well Yarudeyskaya-38 as well as for 13 oil and gas fields in the West Siberia. Variations of the thermal conductivity tensor components in parallel and perpendicular direction to the layer stratification (assessed for 2D anisotropy model of the rock studied), volumetric heat capacity and thermal anisotropy coefficient values and average values of the thermal properties were the subject of statistical analysis for the uppermost deposits aged by: T3-J2 (200-165 Ma); J2-J3 (165-150 Ma); J3 (150-145 Ma); K1 (145-136 Ma); K1 (136-125 Ma); K1-K2 (125-94 Ma); K2-Pg+Ng+Q (94-0 Ma). Uncertainties caused by deviations of thermal conductivity data from its average values were found to be as high as 45 % leading to unexpected errors in the basin heat flow determinations. Also, the essential spatial-temporal variations in the thermal rock properties in the study area is proposed to be taken into account in thermo-hydrodynamic modeling of hydrocarbon recovery with thermal methods. The research work was done with financial support of the Russian Ministry of Education and Science (unique identification number RFMEFI58114X0008).

Canine distemper virus in Lake Baikal seals (Phoca sibirica).

NARCIS (Netherlands)

L.V. Mamaev; I.K.G. Visser (Ilona); S.I. Belikov; N.N. Denikina; T.C. Harder (Timm); L. Goatley; B. Rima; B. Edginton; A.D.M.E. Osterhaus (Albert); T. Barrett (Thomas)

1996-01-01

textabstractThe virus epizootic which resulted in significant mortality in Siberian seals (Phoca sibirica) in Lake Baikal during 1987/88 was caused by canine distemper virus. Sequence analysis of the virus glycoprotein genes revealed that it was most closely related to recent European field isolates

Accelerated Evolution in Distinctive Species Reveals Candidate Elements for Clinically Relevant Traits, Including Mutation and Cancer Resistance.

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Ferris, Elliott; Abegglen, Lisa M; Schiffman, Joshua D; Gregg, Christopher

2018-03-06

The identity of most functional elements in the mammalian genome and the phenotypes they impact are unclear. Here, we perform a genome-wide comparative analysis of patterns of accelerated evolution in species with highly distinctive traits to discover candidate functional elements for clinically important phenotypes. We identify accelerated regions (ARs) in the elephant, hibernating bat, orca, dolphin, naked mole rat, and thirteen-lined ground squirrel lineages in mammalian conserved regions, uncovering ∼33,000 elements that bind hundreds of different regulatory proteins in humans and mice. ARs in the elephant, the largest land mammal, are uniquely enriched near elephant DNA damage response genes. The genomic hotspot for elephant ARs is the E3 ligase subunit of the Fanconi anemia complex, a master regulator of DNA repair. Additionally, ARs in the six species are associated with specific human clinical phenotypes that have apparent concordance with overt traits in each species. Copyright © 2018 The Author(s). Published by Elsevier Inc. All rights reserved.

Accelerated Evolution in Distinctive Species Reveals Candidate Elements for Clinically Relevant Traits, Including Mutation and Cancer Resistance

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Elliott Ferris

2018-03-01

Full Text Available The identity of most functional elements in the mammalian genome and the phenotypes they impact are unclear. Here, we perform a genome-wide comparative analysis of patterns of accelerated evolution in species with highly distinctive traits to discover candidate functional elements for clinically important phenotypes. We identify accelerated regions (ARs in the elephant, hibernating bat, orca, dolphin, naked mole rat, and thirteen-lined ground squirrel lineages in mammalian conserved regions, uncovering ∼33,000 elements that bind hundreds of different regulatory proteins in humans and mice. ARs in the elephant, the largest land mammal, are uniquely enriched near elephant DNA damage response genes. The genomic hotspot for elephant ARs is the E3 ligase subunit of the Fanconi anemia complex, a master regulator of DNA repair. Additionally, ARs in the six species are associated with specific human clinical phenotypes that have apparent concordance with overt traits in each species.

Regional inactivations of primate ventral prefrontal cortex reveal two distinct mechanisms underlying negative bias in decision making.

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Clarke, Hannah F; Horst, Nicole K; Roberts, Angela C

2015-03-31

Dysregulation of the orbitofrontal and ventrolateral prefrontal cortices is implicated in anxiety and mood disorders, but the specific contributions of each region are unknown, including how they gate the impact of threat on decision making. To address this, the effects of GABAergic inactivation of these regions were studied in marmoset monkeys performing an instrumental approach-avoidance decision-making task that is sensitive to changes in anxiety. Inactivation of either region induced a negative bias away from punishment that could be ameliorated with anxiolytic treatment. However, whereas the effects of ventrolateral prefrontal cortex inactivation on punishment avoidance were seen immediately, those of orbitofrontal cortex inactivation were delayed and their expression was dependent upon an amygdala-anterior hippocampal circuit. We propose that these negative biases result from deficits in attentional control and punishment prediction, respectively, and that they provide the basis for understanding how distinct regional prefrontal dysregulation contributes to the heterogeneity of anxiety disorders with implications for cognitive-behavioral treatment strategies.

Distinctiveness of Saudi Arabian EFL Learners

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Manssour Habbash

2016-04-01

Full Text Available In view of the increasing concern among English language teachers dealing with students from Saudi Arabia, as it manifests in TESOL community discussions, about the uniqueness of Saudi Arabian EFL learners, this paper attempts to document the outcome of a study of their distinctiveness from the perspective of expatriate teachers working for PYPs (Preparatory Year Programs in Saudi Arabia. This study examines the distinctiveness with regard to the learning attitudes of Saudi students that are often cultivated by the culture and academic environment in their homeland. Employing an emic approach for collecting the required data an analysis was carried out in light of the other studies on ‘education’ in Saudi Arabia that have particular reference to the factors that can positively influence student motivation, student success and the academic environment. The findings were used in constructing the rationale behind such distinctiveness. Assuming that the outcome of the discussion on the findings of this exploration can be helpful for teachers in adapting their teaching methodology and improving their teacher efficacy in dealing with students both from the kingdom and in the kingdom, some recommendations are made. Keywords: China Distinctiveness, Saudi Arabian University context, Expatriate teachers’ perspective, Distinctiveness Theory

Social conformity despite individual preferences for distinctiveness.

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Smaldino, Paul E; Epstein, Joshua M

2015-03-01

We demonstrate that individual behaviours directed at the attainment of distinctiveness can in fact produce complete social conformity. We thus offer an unexpected generative mechanism for this central social phenomenon. Specifically, we establish that agents who have fixed needs to be distinct and adapt their positions to achieve distinctiveness goals, can nevertheless self-organize to a limiting state of absolute conformity. This seemingly paradoxical result is deduced formally from a small number of natural assumptions and is then explored at length computationally. Interesting departures from this conformity equilibrium are also possible, including divergence in positions. The effect of extremist minorities on these dynamics is discussed. A simple extension is then introduced, which allows the model to generate and maintain social diversity, including multimodal distinctiveness distributions. The paper contributes formal definitions, analytical deductions and counterintuitive findings to the literature on individual distinctiveness and social conformity.

Warming Effects on Pinus sylvestris in the Cold–Dry Siberian Forest–Steppe: Positive or Negative Balance of Trade?

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Tatiana A. Shestakova

2017-12-01

Full Text Available Understanding climate change impacts on drought-prone forests is a critical issue. We investigated ring-width and stable isotopes (Δ13C and δ18O in two Pinus sylvestris stands of the cold–dry Siberian forest–steppe growing under contrasting climatic trends over the last 75 years. Despite regional warming, there was increasing precipitation during the growing period at the southern site (MIN but increasing water deficit (WD at the northern site (BER. Intrinsic water use efficiency (WUEi increased similarly (ca. 22% in response to warming and rising atmospheric CO2. However, the steady increase in WUEi was accompanied by divergent growth patterns since 1980: increasing basal area increment (BAI in MIN (slope = 0.102 cm2 year−2 and decreasing BAI in BER (slope = −0.129 cm2 year−2. This suggests that increased precipitation, mediated by CO2 effects, promoted growth in MIN, whereas intensified drought stress led to decreased carbon gain and productivity in BER. When compared to warm–dry stands of eastern Spain, the WUEi dependence on WD was three-fold greater in Siberia. Conversely, BAI was more affected by the relative impact of water stress within each region. These results indicate contrasting future trajectories of P. sylvestris forests, which challenge forecasting growth and carbon sequestration in cold–dry areas.

Establishment and long-term culture of the cell lines derived from gonad tissues of Siberian sturgeon (Acipenser baerii

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Jun Hyung Ryu

2016-06-01

Full Text Available Abstract To culture germline stem cells in vitro, establishment of the cell lines that can be used as the feeder cells is a prerequisite. In this study, we tried to establish gonad-derived cell lines in Siberian sturgeon (Acipenser baerii. Five 1-year-old A. baerii were used as a donor of gonad tissues, and gonad-dissociated cells were cultured in vitro. Subsequently, determination of growth conditions, long-term culture, characterization, and cryopreservation of the cell lines were also conducted. Five gonad-derived cell lines were stably established and cultured continuously over at least the 73th passage and 402 culture days under the media containing 20 % fetal bovine serum at 28 °C. All cell lines consisted of two main cell types based on morphology even if the ratio of the two cell types was different depending on cell lines. Despite long-term culture, all cell lines maintained diploid DNA contents and expression of several genes that are known to express in the A. baerii gonad. After freezing and thawing of the cell lines, post-thaw cell viabilities between 57.6 and 92.9 % depending on cell lines were indentified, suggesting that stable cryopreservation is possible. The results and the cell lines established in this study will contribute to the development of an in vitro system for A. baerii germline stem cell culture.

Metal transport across biomembranes: emerging models for a distinct chemistry.

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Argüello, José M; Raimunda, Daniel; González-Guerrero, Manuel

2012-04-20

Transition metals are essential components of important biomolecules, and their homeostasis is central to many life processes. Transmembrane transporters are key elements controlling the distribution of metals in various compartments. However, due to their chemical properties, transition elements require transporters with different structural-functional characteristics from those of alkali and alkali earth ions. Emerging structural information and functional studies have revealed distinctive features of metal transport. Among these are the relevance of multifaceted events involving metal transfer among participating proteins, the importance of coordination geometry at transmembrane transport sites, and the presence of the largely irreversible steps associated with vectorial transport. Here, we discuss how these characteristics shape novel transition metal ion transport models.

The Crystal Structure of Streptococcus pyogenes Uridine Phosphorylase Reveals a Distinct Subfamily of Nucleoside Phosphorylases

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Tran, Timothy H.; Christoffersen, S.; Allan, Paula W.; Parker, William B.; Piskur, Jure; Serra, I.; Terreni, M.; Ealick, Steven E. (Cornell); (Pavia); (Lund); (Southern Research)

2011-09-20

Uridine phosphorylase (UP), a key enzyme in the pyrimidine salvage pathway, catalyzes the reversible phosphorolysis of uridine or 2'-deoxyuridine to uracil and ribose 1-phosphate or 2'-deoxyribose 1-phosphate. This enzyme belongs to the nucleoside phosphorylase I superfamily whose members show diverse specificity for nucleoside substrates. Phylogenetic analysis shows Streptococcus pyogenes uridine phosphorylase (SpUP) is found in a distinct branch of the pyrimidine subfamily of nucleoside phosphorylases. To further characterize SpUP, we determined the crystal structure in complex with the products, ribose 1-phosphate and uracil, at 1.8 {angstrom} resolution. Like Escherichia coli UP (EcUP), the biological unit of SpUP is a hexamer with an ?/? monomeric fold. A novel feature of the active site is the presence of His169, which structurally aligns with Arg168 of the EcUP structure. A second active site residue, Lys162, is not present in previously determined UP structures and interacts with O2 of uracil. Biochemical studies of wild-type SpUP showed that its substrate specificity is similar to that of EcUP, while EcUP is {approx}7-fold more efficient than SpUP. Biochemical studies of SpUP mutants showed that mutations of His169 reduced activity, while mutation of Lys162 abolished all activity, suggesting that the negative charge in the transition state resides mostly on uracil O2. This is in contrast to EcUP for which transition state stabilization occurs mostly at O4.

Visual distinctiveness can enhance recency effects.

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Bornstein, B H; Neely, C B; LeCompte, D C

1995-05-01

Experimental efforts to meliorate the modality effect have included attempts to make the visual stimulus more distinctive. McDowd and Madigan (1991) failed to find an enhanced recency effect in serial recall when the last item was made more distinct in terms of its color. In an attempt to extend this finding, three experiments were conducted in which visual distinctiveness was manipulated in a different manner, by combining the dimensions of physical size and coloration (i.e., whether the stimuli were solid or outlined in relief). Contrary to previous findings, recency was enhanced when the size and coloration of the last item differed from the other items in the list, regardless of whether the "distinctive" item was larger or smaller than the remaining items. The findings are considered in light of other research that has failed to obtain a similar enhanced recency effect, and their implications for current theories of the modality effect are discussed.

Multiple analytical approaches reveal distinct gene-environment interactions in smokers and non smokers in lung cancer.

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Rakhshan Ihsan

Full Text Available Complex disease such as cancer results from interactions of multiple genetic and environmental factors. Studying these factors singularly cannot explain the underlying pathogenetic mechanism of the disease. Multi-analytical approach, including logistic regression (LR, classification and regression tree (CART and multifactor dimensionality reduction (MDR, was applied in 188 lung cancer cases and 290 controls to explore high order interactions among xenobiotic metabolizing genes and environmental risk factors. Smoking was identified as the predominant risk factor by all three analytical approaches. Individually, CYP1A1*2A polymorphism was significantly associated with increased lung cancer risk (OR = 1.69;95%CI = 1.11-2.59,p = 0.01, whereas EPHX1 Tyr113His and SULT1A1 Arg213His conferred reduced risk (OR = 0.40;95%CI = 0.25-0.65,p<0.001 and OR = 0.51;95%CI = 0.33-0.78,p = 0.002 respectively. In smokers, EPHX1 Tyr113His and SULT1A1 Arg213His polymorphisms reduced the risk of lung cancer, whereas CYP1A1*2A, CYP1A1*2C and GSTP1 Ile105Val imparted increased risk in non-smokers only. While exploring non-linear interactions through CART analysis, smokers carrying the combination of EPHX1 113TC (Tyr/His, SULT1A1 213GG (Arg/Arg or AA (His/His and GSTM1 null genotypes showed the highest risk for lung cancer (OR = 3.73;95%CI = 1.33-10.55,p = 0.006, whereas combined effect of CYP1A1*2A 6235CC or TC, SULT1A1 213GG (Arg/Arg and betel quid chewing showed maximum risk in non-smokers (OR = 2.93;95%CI = 1.15-7.51,p = 0.01. MDR analysis identified two distinct predictor models for the risk of lung cancer in smokers (tobacco chewing, EPHX1 Tyr113His, and SULT1A1 Arg213His and non-smokers (CYP1A1*2A, GSTP1 Ile105Val and SULT1A1 Arg213His with testing balance accuracy (TBA of 0.6436 and 0.6677 respectively. Interaction entropy interpretations of MDR results showed non-additive interactions of tobacco chewing with

Relationships between declining summer sea ice, increasing temperatures and changing vegetation in the Siberian Arctic tundra from MODIS time series (2000–11)

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Dutrieux, L P; Bartholomeus, H; Herold, M; Verbesselt, J

2012-01-01

The concern about Arctic greening has grown recently as the phenomenon is thought to have significant influence on global climate via atmospheric carbon emissions. Earlier work on Arctic vegetation highlighted the role of summer sea ice decline in the enhanced warming and greening phenomena observed in the region, but did not contain enough details for spatially characterizing the interactions between sea ice, temperature and vegetation photosynthetic absorption. By using 1 km resolution data from the Moderate Resolution Imaging Spectrometer (MODIS) as a primary data source, this study presents detailed maps of vegetation and temperature trends for the Siberian Arctic region, using the time integrated normalized difference vegetation index (TI-NDVI) and summer warmth index (SWI) calculated for the period 2000–11 to represent vegetation greenness and temperature respectively. Spatio-temporal relationships between the two indices and summer sea ice conditions were investigated with transects at eight locations using sea ice concentration data from the Special Sensor Microwave/Imager (SSM/I). In addition, the derived vegetation and temperature trends were compared among major Arctic vegetation types and bioclimate subzones. The fine resolution trend map produced confirms the overall greening (+1% yr −1 ) and warming (+0.27% yr −1 ) of the region, reported in previous studies, but also reveals browning areas. The causes of such local decreases in vegetation, while surrounding areas are experiencing the opposite reaction to changing conditions, are still unclear. Overall correlations between sea ice concentration and SWI as well as TI-NDVI decreased in strength with increasing distance from the coast, with a particularly pronounced pattern in the case of SWI. SWI appears to be driving TI-NDVI in many cases, but not systematically, highlighting the presence of limiting factors other than temperature for plant growth in the region. Further unravelling those limiting

Rhinovirus infection induces distinct transcriptome profiles in polarized human macrophages.

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Rajput, Charu; Walsh, Megan P; Eder, Breanna N; Metitiri, Ediri E; Popova, Antonia P; Hershenson, Marc B

2018-05-01

Infections with rhinovirus (RV) cause asthma exacerbations. Recent studies suggest that macrophages play a role in asthmatic airway inflammation and the innate immune response to RV infection. Macrophages exhibit phenotypes based on surface markers and gene expression. We hypothesized that macrophage polarization state alters gene expression in response to RV infection. Cells were derived from human peripheral blood derived monocytes. M1 and M2 polarization was carried out by using IFN-γ and IL-4, respectively, and RNA was extracted for Affymetrix Human Gene ST2.1 exon arrays. Selected genes were validated by quantitative (q)PCR. Treatment of nonactivated (M0) macrophages with IFN-γ and IL-4 induced the expression of 252 and 153 distinct genes, respectively, including previously-identified M1 and M2 markers. RV infection of M0 macrophages induced upregulation of 232 genes; pathway analysis showed significant overrepresentation of genes involved in IFN-α/β signaling and cytokine signaling in the immune system. RV infection induced differential expression of 195 distinct genes in M1-like macrophages but only seven distinct genes in M2-like-polarized cells. In a secondary analysis, comparison between M0-, RV-infected, and M1-like-polarized, RV-infected macrophages revealed differential expression of 227 genes including those associated with asthma and its exacerbation. qPCR demonstrated increased expression of CCL8, CXCL10, TNFSF10, TNFSF18, IL6, NOD2, and GSDMD and reduced expression of VNN1, AGO1, and AGO2. Together, these data show that, in contrast to M2-like-polarized macrophages, gene expression of M1-like macrophages is highly regulated by RV.

Coevolved Mutations Reveal Distinct Architectures for Two Core Proteins in the Bacterial Flagellar Motor.

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Alessandro Pandini

Full Text Available Switching of bacterial flagellar rotation is caused by large domain movements of the FliG protein triggered by binding of the signal protein CheY to FliM. FliG and FliM form adjacent multi-subunit arrays within the basal body C-ring. The movements alter the interaction of the FliG C-terminal (FliGC "torque" helix with the stator complexes. Atomic models based on the Salmonella entrovar C-ring electron microscopy reconstruction have implications for switching, but lack consensus on the relative locations of the FliG armadillo (ARM domains (amino-terminal (FliGN, middle (FliGM and FliGC as well as changes during chemotaxis. The generality of the Salmonella model is challenged by the variation in motor morphology and response between species. We studied coevolved residue mutations to determine the unifying elements of switch architecture. Residue interactions, measured by their coevolution, were formalized as a network, guided by structural data. Our measurements reveal a common design with dedicated switch and motor modules. The FliM middle domain (FliMM has extensive connectivity most simply explained by conserved intra and inter-subunit contacts. In contrast, FliG has patchy, complex architecture. Conserved structural motifs form interacting nodes in the coevolution network that wire FliMM to the FliGC C-terminal, four-helix motor module (C3-6. FliG C3-6 coevolution is organized around the torque helix, differently from other ARM domains. The nodes form separated, surface-proximal patches that are targeted by deleterious mutations as in other allosteric systems. The dominant node is formed by the EHPQ motif at the FliMMFliGM contact interface and adjacent helix residues at a central location within FliGM. The node interacts with nodes in the N-terminal FliGc α-helix triad (ARM-C and FliGN. ARM-C, separated from C3-6 by the MFVF motif, has poor intra-network connectivity consistent with its variable orientation revealed by structural data. ARM

On Hobbes’s distinction of accidents

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Lupoli Agostino

2012-06-01

Full Text Available An interpolation introduced by K. Schuhmann in his critical edition of "De corpore" (chap. VI, § 13 diametrically overturns the meaning of Hobbes’s doctrine of distinction of accidents in comparison with all previous editions. The article focuses on the complexity of this crucial juncture in "De corpore" argument on which depends the interpretation of Hobbes’s whole conception of science. It discusses the reasons pro and contra Schuhmann’s interpolation and concludes against it, because it is not compatible with the rationale underlying the complex architecture of "De corpore", which involves a symmetry between the ‘logical’ distinction of accidents and the ‘metaphysical’ distinction of phantasms.

Distinct Neural Activity Associated with Focused-Attention Meditation and Loving-Kindness Meditation

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Lee, Tatia M. C.; Leung, Mei-Kei; Hou, Wai-Kai; Tang, Joey C. Y.; Yin, Jing; So, Kwok-Fai; Lee, Chack-Fan; Chan, Chetwyn C. H.

2012-01-01

This study examined the dissociable neural effects of ānāpānasati (focused-attention meditation, FAM) and mettā (loving-kindness meditation, LKM) on BOLD signals during cognitive (continuous performance test, CPT) and affective (emotion-processing task, EPT, in which participants viewed affective pictures) processing. Twenty-two male Chinese expert meditators (11 FAM experts, 11 LKM experts) and 22 male Chinese novice meditators (11 FAM novices, 11 LKM novices) had their brain activity monitored by a 3T MRI scanner while performing the cognitive and affective tasks in both meditation and baseline states. We examined the interaction between state (meditation vs. baseline) and expertise (expert vs. novice) separately during LKM and FAM, using a conjunction approach to reveal common regions sensitive to the expert meditative state. Additionally, exclusive masking techniques revealed distinct interactions between state and group during LKM and FAM. Specifically, we demonstrated that the practice of FAM was associated with expertise-related behavioral improvements and neural activation differences in attention task performance. However, the effect of state LKM meditation did not carry over to attention task performance. On the other hand, both FAM and LKM practice appeared to affect the neural responses to affective pictures. For viewing sad faces, the regions activated for FAM practitioners were consistent with attention-related processing; whereas responses of LKM experts to sad pictures were more in line with differentiating emotional contagion from compassion/emotional regulation processes. Our findings provide the first report of distinct neural activity associated with forms of meditation during sustained attention and emotion processing. PMID:22905090

The distinctive gastric fluid proteome in gastric cancer reveals a multi-biomarker diagnostic profile

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Eng Alvin KH

2008-10-01

Full Text Available Abstract Background Overall gastric cancer survival remains poor mainly because there are no reliable methods for identifying highly curable early stage disease. Multi-protein profiling of gastric fluids, obtained from the anatomic site of pathology, could reveal diagnostic proteomic fingerprints. Methods Protein profiles were generated from gastric fluid samples of 19 gastric cancer and 36 benign gastritides patients undergoing elective, clinically-indicated gastroscopy using surface-enhanced laser desorption/ionization time-of-flight mass spectrometry on multiple ProteinChip arrays. Proteomic features were compared by significance analysis of microarray algorithm and two-way hierarchical clustering. A second blinded sample set (24 gastric cancers and 29 clinically benign gastritides was used for validation. Results By significance analysyis of microarray, 60 proteomic features were up-regulated and 46 were down-regulated in gastric cancer samples (p Conclusion This simple and reproducible multimarker proteomic assay could supplement clinical gastroscopic evaluation of symptomatic patients to enhance diagnostic accuracy for gastric cancer and pre-malignant lesions.

Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans.

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Cenik, Can; Cenik, Elif Sarinay; Byeon, Gun W; Grubert, Fabian; Candille, Sophie I; Spacek, Damek; Alsallakh, Bilal; Tilgner, Hagen; Araya, Carlos L; Tang, Hua; Ricci, Emiliano; Snyder, Michael P

2015-11-01

Elucidating the consequences of genetic differences between humans is essential for understanding phenotypic diversity and personalized medicine. Although variation in RNA levels, transcription factor binding, and chromatin have been explored, little is known about global variation in translation and its genetic determinants. We used ribosome profiling, RNA sequencing, and mass spectrometry to perform an integrated analysis in lymphoblastoid cell lines from a diverse group of individuals. We find significant differences in RNA, translation, and protein levels suggesting diverse mechanisms of personalized gene expression control. Combined analysis of RNA expression and ribosome occupancy improves the identification of individual protein level differences. Finally, we identify genetic differences that specifically modulate ribosome occupancy--many of these differences lie close to start codons and upstream ORFs. Our results reveal a new level of gene expression variation among humans and indicate that genetic variants can cause changes in protein levels through effects on translation. © 2015 Cenik et al.; Published by Cold Spring Harbor Laboratory Press.

Saturation Mutagenesis of the HIV-1 Envelope CD4 Binding Loop Reveals Residues Controlling Distinct Trimer Conformations.

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Maria Duenas-Decamp

2016-11-01

Full Text Available The conformation of HIV-1 envelope (Env glycoprotein trimers is key in ensuring protection against waves of neutralizing antibodies generated during infection, while maintaining sufficient exposure of the CD4 binding site (CD4bs for viral entry. The CD4 binding loop on Env is an early contact site for CD4 while penetration of a proximal cavity by CD4 triggers Env conformational changes for entry. The role of residues in the CD4 binding loop in regulating the conformation of the trimer and trimer association domain (TAD was investigated using a novel saturation mutagenesis approach. Single mutations identified, resulted in distinct trimer conformations affecting CD4bs exposure, the glycan shield and the TAD across diverse HIV-1 clades. Importantly, mutations that improve access to the CD4bs without exposing the immunodominant V3 loop were identified. The different trimer conformations identified will affect the specificity and breadth of nabs elicited in vivo and are important to consider in design of Env immunogens for vaccines.

Modeling autosomal recessive cutis laxa type 1C in mice reveals distinct functions for Ltbp-4 isoforms

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Bultmann-Mellin, Insa; Conradi, Anne; Maul, Alexandra C

2015-01-01

Recent studies have revealed an important role for LTBP-4 in elastogenesis. Its mutational inactivation in humans causes autosomal recessive cutis laxa type 1C (ARCL1C), which is a severe disorder caused by defects of the elastic fiber network. Although the human gene involved in ARCL1C has been ...

A non-toxigenic but morphologically and phylogenetically distinct new species of Pseudo-nitzschia, P. sabit sp. nov. (Bacillariophyceae).

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Teng, Sing Tung; Lim, Po Teen; Lim, Hong Chang; Rivera-Vilarelle, María; Quijano-Scheggia, Sonia; Takata, Yoshinobu; Quilliam, Michael A; Wolf, Matthias; Bates, Stephen S; Leaw, Chui Pin

2015-08-01

A new species of Pseudo-nitzschia (Bacillariophyceae) is described from plankton samples collected from Port Dickson (Malacca Strait, Malaysia) and Manzanillo Bay (Colima, Mexico). The species possesses a distinctive falcate cell valve, from which they form sickle-like colonies in both environmental samples and cultured strains. Detailed observation of frustules under TEM revealed ultrastructure that closely resembles P. decipiens, yet the new species differs by the valve shape and greater ranges of striae and poroid densities. The species is readily distinguished from the curve-shaped P. subcurvata by the presence of a central interspace. The morphological distinction is further supported by phylogenetic discrimination. We sequenced and analyzed the nuclear ribosomal RNA genes in the LSU and the second internal transcribed spacer, including its secondary structure, to infer the phylogenetic relationship of the new species with its closest relatives. The results revealed a distinct lineage of the new species, forming a sister cluster with its related species, P. decipiens and P. galaxiae, but not with P. subcurvata. We examined the domoic acid (DA) production of five cultured strains from Malaysia by Liquid chromatography-mass spectrometry (LC-MS), but they showed no detectable DA. Here, we present the taxonomic description of the vegetative cells, document the sexual reproduction, and detail the molecular phylogenetics of Pseudo-nitzschia sabit sp. nov. © 2015 Phycological Society of America.

High-resolution sub-bottom seismic and sediment core records from the Chukchi Abyssal Plain reveal Quaternary glaciation impacts on the western Arctic Ocean

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Joe, Y. J.; Seokhoon, Y.; Nam, S. I.; Polyak, L.; Niessen, F.

2017-12-01

For regional context of the Quaternary history of Arctic marine glaciations, such as glacial events in northern North America and on the Siberian and Chukchi margins, we used CHIRP sub-bottom profiles (SBP) along with sediment cores, including a 14-m long piston core ARA06-04JPC taken from the Chukchi abyssal plain during the RV Araon expedition in 2015. Based on core correlation with earlier developed Arctic Ocean stratigraphies using distribution of various sedimentary proxies, core 04JPC is estimated to extend to at least Marine Isotope Stage 13 (>0.5 Ma). The stratigraphy developed for SBP lines from the Chukchi abyssal plain to surrounding slopes can be divided into four major seismostratigraphic units (SSU 1-4). SBP records from the abyssal plain show well preserved stratification, whereas on the surrounding slopes this pattern is disrupted by lens-shaped, acoustically transparent sedimentary bodies interpreted as glaciogenic debris flow deposits. Based on the integration of sediment physical property and SBP data, we conclude that these debris flows were generated during several ice-sheet grounding events on the Chukchi and East Siberian margins, including adjacent ridges and plateaus, during the middle to late Quaternary.

Distinct prion-like strains of amyloid beta implicated in phenotypic diversity of Alzheimer's disease.

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Cohen, Mark; Appleby, Brian; Safar, Jiri G

2016-01-01

Vast evidence on human prions demonstrates that variable disease phenotypes, rates of propagation, and targeting of distinct brain structures are determined by unique conformers (strains) of pathogenic prion protein (PrP(Sc)). Recent progress in the development of advanced biophysical tools that inventory structural characteristics of amyloid beta (Aβ) in the brain cortex of phenotypically diverse Alzheimer's disease (AD) patients, revealed unique spectrum of oligomeric particles in the cortex of rapidly progressive cases, implicating these structures in variable rates of propagation in the brain, and in distict disease manifestation. Since only ∼30% of phenotypic diversity of AD can be explained by polymorphisms in risk genes, these and transgenic bioassay data argue that structurally distinct Aβ particles play a major role in the diverse pathogenesis of AD, and may behave as distinct prion-like strains encoding diverse phenotypes. From these observations and our growing understanding of prions, there is a critical need for new strain-specific diagnostic strategies for misfolded proteins causing these elusive disorders. Since targeted drug therapy can induce mutation and evolution of prions into new strains, effective treatments of AD will require drugs that enhance clearance of pathogenic conformers, reduce the precursor protein, or inhibit the conversion of precursors into prion-like states.

Light at night alters daily patterns of cortisol and clock proteins in female Siberian hamsters.

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Bedrosian, T A; Galan, A; Vaughn, C A; Weil, Z M; Nelson, R J

2013-06-01

Humans and other organisms have adapted to a 24-h solar cycle in response to life on Earth. The rotation of the planet on its axis and its revolution around the sun cause predictable daily and seasonal patterns in day length. To successfully anticipate and adapt to these patterns in the environment, a variety of biological processes oscillate with a daily rhythm of approximately 24 h in length. These rhythms arise from hierarchally-coupled cellular clocks generated by positive and negative transcription factors of core circadian clock gene expression. From these endogenous cellular clocks, overt rhythms in activity and patterns in hormone secretion and other homeostatic processes emerge. These circadian rhythms in physiology and behaviour can be organised by a variety of cues, although they are most potently entrained by light. In recent history, there has been a major change from naturally-occurring light cycles set by the sun, to artificial and sometimes erratic light cycles determined by the use of electric lighting. Virtually every individual living in an industrialised country experiences light at night (LAN) but, despite its prevalence, the biological effects of such unnatural lighting have not been fully considered. Using female Siberian hamsters (Phodopus sungorus), we investigated the effects of chronic nightly exposure to dim light on daily rhythms in locomotor activity, serum cortisol concentrations and brain expression of circadian clock proteins (i.e. PER1, PER2, BMAL1). Although locomotor activity remained entrained to the light cycle, the diurnal fluctuation of cortisol concentrations was blunted and the expression patterns of clock proteins in the suprachiasmatic nucleus and hippocampus were altered. These results demonstrate that chronic exposure to dim LAN can dramatically affect fundamental cellular function and emergent physiology. © 2013 British Society for Neuroendocrinology.

Dispersal limitation drives successional pathways in Central Siberian forests under current and intensified fire regimes.

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Tautenhahn, Susanne; Lichstein, Jeremy W; Jung, Martin; Kattge, Jens; Bohlman, Stephanie A; Heilmeier, Hermann; Prokushkin, Anatoly; Kahl, Anja; Wirth, Christian

2016-06-01

Fire is a primary driver of boreal forest dynamics. Intensifying fire regimes due to climate change may cause a shift in boreal forest composition toward reduced dominance of conifers and greater abundance of deciduous hardwoods, with potential biogeochemical and biophysical feedbacks to regional and global climate. This shift has already been observed in some North American boreal forests and has been attributed to changes in site conditions. However, it is unknown if the mechanisms controlling fire-induced changes in deciduous hardwood cover are similar among different boreal forests, which differ in the ecological traits of the dominant tree species. To better understand the consequences of intensifying fire regimes in boreal forests, we studied postfire regeneration in five burns in the Central Siberian dark taiga, a vast but poorly studied boreal region. We combined field measurements, dendrochronological analysis, and seed-source maps derived from high-resolution satellite images to quantify the importance of site conditions (e.g., organic layer depth) vs. seed availability in shaping postfire regeneration. We show that dispersal limitation of evergreen conifers was the main factor determining postfire regeneration composition and density. Site conditions had significant but weaker effects. We used information on postfire regeneration to develop a classification scheme for successional pathways, representing the dominance of deciduous hardwoods vs. evergreen conifers at different successional stages. We estimated the spatial distribution of different successional pathways under alternative fire regime scenarios. Under intensified fire regimes, dispersal limitation of evergreen conifers is predicted to become more severe, primarily due to reduced abundance of surviving seed sources within burned areas. Increased dispersal limitation of evergreen conifers, in turn, is predicted to increase the prevalence of successional pathways dominated by deciduous hardwoods

Are children conservative, liberal, or metacognitive? Preliminary evidence for the involvement of the distinctiveness heuristic in decision making.

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Geurten, Marie; Willems, Sylvie; Meulemans, Thierry

2015-04-01

The experiment tested whether young children are able to reduce their false recognition rate after distinctive encoding by implementing a strategic metacognitive rule. The participants, 72 children aged 4, 6, and 9 years, studied two lists of unrelated items. One of these lists was visually displayed (picture condition), whereas the other was presented auditorily (word condition). After each study phase, participants completed recognition tests. Finally, they answered questions about their explicit knowledge of the distinctive encoding effect. The results revealed that even the youngest children in our sample showed a smaller proportion of intrusions in the picture condition than in the word condition. Furthermore, the results of the signal detection analyses were consistent with the hypothesis that the lower rate of false recognitions after picture encoding results from the implementation of a conservative response criterion based on metacognitive expectations (distinctiveness heuristic). Moreover, the absence of correlation between children's explicit knowledge of the distinctiveness rule and their effective use of this metacognitive heuristic seems to indicate that its involvement in memory decisions could be mediated by implicit mechanisms. Copyright © 2015 Elsevier Inc. All rights reserved.

Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures.

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Fernandes, Maria Cecilia; Dillon, Laura A L; Belew, Ashton Trey; Bravo, Hector Corrada; Mosser, David M; El-Sayed, Najib M

2016-05-10

Macrophages are mononuclear phagocytes that constitute a first line of defense against pathogens. While lethal to many microbes, they are the primary host cells of Leishmania spp. parasites, the obligate intracellular pathogens that cause leishmaniasis. We conducted transcriptomic profiling of two Leishmania species and the human macrophage over the course of intracellular infection by using high-throughput RNA sequencing to characterize the global gene expression changes and reprogramming events that underlie the interactions between the pathogen and its host. A systematic exclusion of the generic effects of large-particle phagocytosis revealed a vigorous, parasite-specific response of the human macrophage early in the infection that was greatly tempered at later time points. An analogous temporal expression pattern was observed with the parasite, suggesting that much of the reprogramming that occurs as parasites transform into intracellular forms generally stabilizes shortly after entry. Following that, the parasite establishes an intracellular niche within macrophages, with minimal communication between the parasite and the host cell later during the infection. No significant difference was observed between parasite species transcriptomes or in the transcriptional response of macrophages infected with each species. Our comparative analysis of gene expression changes that occur as mouse and human macrophages are infected by Leishmania spp. points toward a general signature of the Leishmania-macrophage infectome. Little is known about the transcriptional changes that occur within mammalian cells harboring intracellular pathogens. This study characterizes the gene expression signatures of Leishmania spp. parasites and the coordinated response of infected human macrophages as the pathogen enters and persists within them. After accounting for the generic effects of large-particle phagocytosis, we observed a parasite-specific response of the human macrophages early in

What makes health promotion research distinct?

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Woodall, James; Warwick-Booth, Louise; South, Jane; Cross, Ruth

2018-02-01

There have been concerns about the decline of health promotion as a practice and discipline and, alongside this, calls for a clearer articulation of health promotion research and what, if anything, makes it distinct. This discussion paper, based on a review of the literature, the authors' own experiences in the field, and a workshop delivered by two of the authors at the 8th Nordic Health Promotion Conference, seeks to state the reasons why health promotion research is distinctive. While by no means exhaustive, the paper suggests four distinctive features. The paper hopes to be a catalyst to enable health promotion researchers to be explicit in their practice and to begin the process of developing an agreed set of research principles.

The RNA Exosome Channeling and Direct Access Conformations Have Distinct In Vivo Functions

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Jaeil Han

2016-09-01

Full Text Available The RNA exosome is a 3′–5′ ribonuclease complex that is composed of nine core subunits and an essential catalytic subunit, Rrp44. Two distinct conformations of Rrp44 were revealed in previous structural studies, suggesting that Rrp44 may change its conformation to exert its function. In the channeling conformation, (Rrp44ch, RNA accesses the active site after traversing the central channel of the RNA exosome, whereas in the other conformation, (Rrp44da, RNA gains direct access to the active site. Here, we show that the Rrp44da exosome is important for nuclear function of the RNA exosome. Defects caused by disrupting the direct access conformation are distinct from those caused by channel-occluding mutations, indicating specific functions for each conformation. Our genetic analyses provide in vivo evidence that the RNA exosome employs a direct-access route to recruit specific substrates, indicating that the RNA exosome uses alternative conformations to act on different RNA substrates.

U.S. and Russian cooperative efforts to enhance nuclear material protection, control, and accountability at the Siberian Chemical Combine at Tomsk-7

International Nuclear Information System (INIS)

Kreykes, J.; Petrushev, V.I.; Griggs, J.

1996-01-01

The US partners in the Laboratory-to-Laboratory Program in Nuclear Materials Protection, Control, and Accountability (MPC and A) have reached signed agreements with the Siberian Chemical Combine (SKhK) to rapidly enhance the protection, control, and accountability of nuclear material at all of its facilities. SKhK is the largest multi-function production center of the Russian nuclear complex and, until recently, its facilities produced and processed special nuclear materials for the Russian Defense Ministry. SKhK produces heat and electricity, enriches uranium for commercial reactor fuel, reprocesses irradiated fuel, and converts highly enriched uranium metal into oxide for blending into low-enriched reactor-grade uranium, and manufactures civilian products. SKhK is aggressively pursuing a program to enhance MPC and A which includes the installation of pedestrian and vehicle radiation monitors, rapid inventory methods, tamper-indicating devices, computerized accounting systems, and physical protection measures. This work is a collaboration between technical experts from Brookhaven, Lawrence Livermore, Los Alamos, Oak Ridge, pacific Northwest, and Sandia National Laboratories and their Russian counterparts at SKhK. This paper reviews the status of this initial effort and outlines plans for continuing the work in 1996

Abundance, distribution and conservation status of Siberian ibex, Marco Polo and Blue sheep in Karakoram-Pamir mountain area

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Babar Khan

2016-07-01

Full Text Available This study was carried out to investigate abundance, distribution, structure and conservation status of three major ungulate species viz., Capra sibirica, Pseudois nayaur and Ovis ammon polii, in the Karakoram-Pamir mountain area between China and Pakistan. Results showed that the entire study area had a scattered but worthwhile population of Siberian ibex, Blue sheep and Marco Polo sheep, except Khunjerab Pass, Koksil-Pateshek and Barkhun areas of Khunjerab National Park (KNP. Large groups of Blue sheep were sighted in Shimshal and Barkhun valleys (KNP but it did not show up in the Muztagh part of Taxkorgan Nature Reserve (TNR in China. Despite scarcity of natural vegetation and extreme climate, estimated abundance of ibex and Marco Polo sheep was not different from that in Protected Areas of Nepal, China, and India, except for Blue sheep. Marco Polo sheep, Blue sheep and Snow leopard roam across international borders among China, Pakistan and other adjacent countries. Illegal hunting and poaching, removal of natural vegetation for fodder and firewood, and over grazing of pastures by livestock were main habitat issues whereas, border fencing for security reasons, has been a major impediment restricting free movement of the wildlife across international borders. A science based conservation and development strategy is proposed to restore viable wildlife populations and maintain ecological flows of Karakoram Pamir Mountains to benefit both the wild species and the local human communities.

Heterogeneous Patterns of Genetic Diversity and Differentiation in European and Siberian Chiffchaff (Phylloscopus collybita abietinus/P. tristis)

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Talla, Venkat; Kalsoom, Faheema; Shipilina, Daria; Marova, Irina; Backström, Niclas

2017-01-01

Identification of candidate genes for trait variation in diverging lineages and characterization of mechanistic underpinnings of genome differentiation are key steps toward understanding the processes underlying the formation of new species. Hybrid zones provide a valuable resource for such investigations, since they allow us to study how genomes evolve as species exchange genetic material and to associate particular genetic regions with phenotypic traits of interest. Here, we use whole-genome resequencing of both allopatric and hybridizing populations of the European (Phylloscopus collybita abietinus) and the Siberian chiffchaff (P. tristis)—two recently diverged species which differ in morphology, plumage, song, habitat, and migration—to quantify the regional variation in genome-wide genetic diversity and differentiation, and to identify candidate regions for trait variation. We find that the levels of diversity, differentiation, and divergence are highly heterogeneous, with significantly reduced global differentiation, and more pronounced differentiation peaks in sympatry than in allopatry. This pattern is consistent with regional differences in effective population size and recurrent background selection or selective sweeps reducing the genetic diversity in specific regions prior to lineage divergence, but the data also suggest that postdivergence selection has resulted in increased differentiation and fixed differences in specific regions. We find that hybridization and backcrossing is common in sympatry, and that phenotype is a poor predictor of the genomic composition of sympatric birds. The combination of a differentiation scan approach with identification of fixed differences pinpoint a handful of candidate regions that might be important for trait variation between the two species. PMID:29054864

Seronegative necrolytic acral erythema: A distinct clinical subset?

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Panda S

2010-01-01

Full Text Available A patient was referred to us with asymptomatic, erythematous, nonitchy, scaly lesions present bilaterally on the dorsa of his feet and toes since the last 2 months. Both the legs had pitting edema as well. There were hyperkeratosis, focal parakeratosis, acanthosis and scattered spongiosis in the epidermis, and proliferation of capillaries with perivascular infiltration of lymphomononuclear cells in the dermis. There was no serological evidence of hepatitis C virus. Laboratory investigations revealed hypoalbuminemia and low-normal serum zinc. On clinicopathological correlation, we made a diagnosis of necrolytic acral erythema (NAE. The lesions responded dramatically to oral zinc sulfate and topical clobetasol propionate within 3 weeks with disappearance of edema and scaling and only a minimal residual erythema. This is the first reported case of NAE from Eastern India. NAE with negative serology for hepatitis C may be viewed as a distinct subset of the condition that had been originally described.

Quantitative mass spectrometry of histones H3.2 and H3.3 in Suz12-deficient mouse embryonic stem cells reveals distinct, dynamic post-translational modifications at Lys-27 and Lys-36

DEFF Research Database (Denmark)

Jung, Hye Ryung; Pasini, Diego; Helin, Kristian

2010-01-01

distinct coexisting modifications. In certain cases, high mass accuracy LTQ-Orbitrap MS/MS allowed precise localization of near isobaric coexisting PTMs such as trimethylation and acetylation within individual peptides. ETD MS/MS facilitated sequencing and annotation of phosphorylated histone peptides....... The combined use of ETD and CID MS/MS increased the total number of identified modified peptides. Comparative quantitative analysis of histones from wild type and Suz12-deficient ESCs using stable isotope labeling with amino acids in cell culture and LC-MS/MS revealed a dramatic reduction of H3K27me2 and H3K27......me3 and an increase of H3K27ac, thereby uncovering an antagonistic methyl/acetyl switch at H3K27. The reduction in H3K27 methylation and increase in H3K27 acetylation was accompanied by H3K36 acetylation and methylation. Estimation of the global isoform percentage of unmodified and modified histone...

Genetically distinct isolates of Spirocerca sp. from a naturally infected red fox (Vulpes vulpes) from Denmark.

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Al-Sabi, Mohammad Nafi Solaiman; Hansen, Mette Sif; Chriél, Mariann; Holm, Elisabeth; Larsen, Gitte; Enemark, Heidi Larsen

2014-09-15

Spirocerca lupi causes formation of nodules that may transform into sarcoma in the walls of aorta, esophagus and stomach of infected canids. In February 2013, post mortem examination of a red fox (Vulpes vulpes) hunted in Denmark revealed the presence of several nodules containing adult worms of Spirocerca sp. in the stomach and the omentum. The nodules largely consisted of fibrous tissue with infiltration of mononuclear cells, neutrophilic granulocytes and macrophages with hemosiderin deposition. Parasitological examination by three copromicroscopic methods, sedimentation, flotation with saturated sugar-salt solution, and sieving failed to detect eggs of Spirocerca sp. in feces collected from the colon. This is the first report of spirocercosis in Denmark, and may have been caused by a recent introduction by migrating paratenic or definitive host. Analysis of two overlapping partial sequences of the cox1 gene, from individual worms, revealed distinct genetic variation (7-9%) between the Danish worms and isolates of S. lupi from Europe, Asia and Africa. This was confirmed by phylogenetic analysis that clearly separated the Danish worms from other isolates of S. lupi. The distinct genetic differences of the current worms compared to other isolates of S. lupi may suggest the presence of a cryptic species within Spirocerca. Copyright © 2014 Elsevier B.V. All rights reserved.

OCT2, SSX and SAGE1 reveal the phenotypic heterogeneity of spermatocytic seminoma reflecting distinct subpopulations of spermatogonia

DEFF Research Database (Denmark)

Lim, Jasmine; Goriely, Anne; Turner, Gareth Dh

2011-01-01

in the normal adult testis. We analysed the expression pattern of OCT2, SSX2-4, and SAGE1 in 36 SS cases and four intratubular SS (ISS) as well as a series of normal testis samples throughout development. We describe for the first time two different types of SS characterized by OCT2 or SSX2-4 immunoexpression......, whilst SAGE1 was exclusively present in a subset of post-pubertal germ cells, most likely B spermatogonia. The presence of OCT2 and SSX2-4 in distinct subsets of germ cells implies that these markers represent germ cells at different maturation stages. Analysis of SAGE1 and SSX2-4 in ISS showed spatial...... differences suggesting ongoing maturation of germ cells during progression of SS tumourigenesis. We conclude that the expression pattern of OCT2, SSX2-4, and SAGE1 supports the origin of SS from spermatogonia and provides new evidence for heterogeneity of this tumour, potentially linked either to the cellular...

Structure of N-Terminal Domain of NPC1 Reveals Distinct Subdomains for Binding and Transfer of Cholesterol

Energy Technology Data Exchange (ETDEWEB)

Kwon, Hyock Joo; Abi-Mosleh, Lina; Wang, Michael L.; Deisenhofer, Johann; Goldstein, Joseph L.; Brown, Michael S.; Infante, Rodney E.; (UTSMC)

2010-09-21

LDL delivers cholesterol to lysosomes by receptor-mediated endocytosis. Exit of cholesterol from lysosomes requires two proteins, membrane-bound Niemann-Pick C1 (NPC1) and soluble NPC2. NPC2 binds cholesterol with its isooctyl side chain buried and its 3{beta}-hydroxyl exposed. Here, we describe high-resolution structures of the N-terminal domain (NTD) of NPC1 and complexes with cholesterol and 25-hydroxycholesterol. NPC1(NTD) binds cholesterol in an orientation opposite to NPC2: 3{beta}-hydroxyl buried and isooctyl side chain exposed. Cholesterol transfer from NPC2 to NPC1(NTD) requires reorientation of a helical subdomain in NPC1(NTD), enlarging the opening for cholesterol entry. NPC1 with point mutations in this subdomain (distinct from the binding subdomain) cannot accept cholesterol from NPC2 and cannot restore cholesterol exit from lysosomes in NPC1-deficient cells. We propose a working model wherein after lysosomal hydrolysis of LDL-cholesteryl esters, cholesterol binds NPC2, which transfers it to NPC1(NTD), reversing its orientation and allowing insertion of its isooctyl side chain into the outer lysosomal membranes.

Features of Inner Structure of Placer Gold of the North-Eastern Part Siberian Platform

Science.gov (United States)

Gerasimov, Boris; Zhuravlev, Anatolii; Ivanov, Alexey

2017-12-01

Mineral and raw material base of placer and ore gold is based on prognosis evaluation, which allows to define promising areas regarding gold-bearing deposit prospecting. But there are some difficulties in gold primary source predicting and prospecting at the North-east Siberian platform, because the studied area is overlapped by thick cover of the Cenozoic deposits, where traditional methods of gold deposit prospecting are ineffective. In this connection, detailed study of typomorphic features of placer gold is important, because it contains key genetic information, necessary for development of mineralogical criteria of prognosis evaluation of ore gold content. Authors studied mineralogical-geochemical features of placer gold of the Anabar placer area for 15 years, with a view to identify indicators of gold, typical for different formation types of primary sources. This article presents results of these works. In placer regions, where primary sources of gold are not identified, there is need to study typomorphic features of placer gold, because it contains important genetic information, necessary for the development of mineralogical criteria of prognosis evaluation of ore gold content. Inner structures of gold from the Anabar placer region are studied, as one of the diagnostic typomorphic criteria as described in prominent method, developed by N.V. Petrovskaya [1980]. Etching of gold was carried out using reagent: HCl + HNO3 + FeCl3 × 6H2O + CrO3 +thioureat + water. Identified inner structures wer studied in details by means of scanning electron microscope JEOL JSM-6480LV. Two types of gold are identified according to the features of inner structure of placer gold of the Anabar region. First type - medium-high karat fine, well processed gold with significantly changed inner structure. This gold is allochthonous, which was redeposited many times from ancient intermediate reservoirs to younger deposits. Second type - low-medium karat, poorly rounded gold with

Partial pressure (or fugacity) of carbon dioxide, salinity and sea surface temperature collected from Surface underway observations using Carbon dioxide (CO2) gas analyzer, Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement and other instruments during R/V Oden cruise Beringia_2005 (EXPOCODE 77DN20050720) in the Northwest Passage, Can. Archipelago, Bering Strait, Chukchi Sea, East Siberian Sea and Arctic Ocean from 2005-07-20 to 2005-08-17 (NCEI Accession 0164210)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — NCEI Accession 0164210 includes Surface underway data collected from R/V Oden in the Northwest Passage, Can. Archipelago, Bering Strait, Chukchi Sea, East Siberian...

Load and distinctness interact in working memory for lexical manual gestures

Directory of Open Access Journals (Sweden)

Mary eRudner

2015-08-01

Full Text Available The Ease of Language Understanding model (ELU, Rönnberg et al., 2013 predicts that decreasing the distinctness of language stimuli increases working memory load; in the speech domain this notion is supported by empirical evidence. Our aim was to determine whether such an over-additive interaction can be generalized to sign processing in sign-naïve individuals and whether it is modulated by experience of computer gaming. Twenty young adults with no knowledge of sign language performed an n-back working memory task based on manual gestures lexicalized in sign language; the visual resolution of the signs and working memory load were manipulated. Performance was poorer when load was high and resolution was low. These two effects interacted over-additively, demonstrating that reducing the resolution of signed stimuli increases working memory load when there is no pre-existing semantic representation. This suggests that load and distinctness are handled by a shared amodal mechanism which can be revealed empirically when stimuli are degraded and load is high, even without pre-existing semantic representation. There was some evidence that the mechanism is influenced by computer gaming experience. Future work should explore how the shared mechanism is influenced by pre-existing semantic representation and sensory factors together with computer gaming experience.

Load and distinctness interact in working memory for lexical manual gestures.

Science.gov (United States)

Rudner, Mary; Toscano, Elena; Holmer, Emil

2015-01-01

The Ease of Language Understanding model (Rönnberg et al., 2013) predicts that decreasing the distinctness of language stimuli increases working memory load; in the speech domain this notion is supported by empirical evidence. Our aim was to determine whether such an over-additive interaction can be generalized to sign processing in sign-naïve individuals and whether it is modulated by experience of computer gaming. Twenty young adults with no knowledge of sign language performed an n-back working memory task based on manual gestures lexicalized in sign language; the visual resolution of the signs and working memory load were manipulated. Performance was poorer when load was high and resolution was low. These two effects interacted over-additively, demonstrating that reducing the resolution of signed stimuli increases working memory load when there is no pre-existing semantic representation. This suggests that load and distinctness are handled by a shared amodal mechanism which can be revealed empirically when stimuli are degraded and load is high, even without pre-existing semantic representation. There was some evidence that the mechanism is influenced by computer gaming experience. Future work should explore how the shared mechanism is influenced by pre-existing semantic representation and sensory factors together with computer gaming experience.

Connectivity-based parcellation reveals distinct cortico-striatal connectivity fingerprints in Autism Spectrum Disorder.

Science.gov (United States)

Balsters, Joshua H; Mantini, Dante; Wenderoth, Nicole

2018-04-15

Autism Spectrum Disorder (ASD) has been associated with abnormal synaptic development causing a breakdown in functional connectivity. However, when measured at the macro scale using resting state fMRI, these alterations are subtle and often difficult to detect due to the large heterogeneity of the pathology. Recently, we outlined a novel approach for generating robust biomarkers of resting state functional magnetic resonance imaging (RS-fMRI) using connectivity based parcellation of gross morphological structures to improve single-subject reproducibility and generate more robust connectivity fingerprints. Here we apply this novel approach to investigating the organization and connectivity strength of the cortico-striatal system in a large sample of ASD individuals and typically developed (TD) controls (N=130 per group). Our results showed differences in the parcellation of the striatum in ASD. Specifically, the putamen was found to be one single structure in ASD, whereas this was split into anterior and posterior segments in an age, IQ, and head movement matched TD group. An analysis of the connectivity fingerprints revealed that the group differences in clustering were driven by differential connectivity between striatum and the supplementary motor area, posterior cingulate cortex, and posterior insula. Our approach for analysing RS-fMRI in clinical populations has provided clear evidence that cortico-striatal circuits are organized differently in ASD. Based on previous task-based segmentations of the striatum, we believe that the anterior putamen cluster present in TD, but not in ASD, likely contributes to social and language processes. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Rickettsia parkeri rickettsiosis and its clinical distinction from Rocky Mountain spotted fever.

Science.gov (United States)

Paddock, Christopher D; Finley, Richard W; Wright, Cynthia S; Robinson, Howard N; Schrodt, Barbara J; Lane, Carole C; Ekenna, Okechukwu; Blass, Mitchell A; Tamminga, Cynthia L; Ohl, Christopher A; McLellan, Susan L F; Goddard, Jerome; Holman, Robert C; Openshaw, John J; Sumner, John W; Zaki, Sherif R; Eremeeva, Marina E

2008-11-01

Rickettsia parkeri rickettsiosis, a recently identified spotted fever transmitted by the Gulf Coast tick (Amblyomma maculatum), was first described in 2004. We summarize the clinical and epidemiological features of 12 patients in the United States with confirmed or probable disease attributable to R. parkeri and comment on distinctions between R. parkeri rickettsiosis and other United States rickettsioses. Clinical specimens from patients in the United States who reside within the range of A. maculatum for whom an eschar or vesicular rash was described were evaluated by > or =1 laboratory assays at the Centers for Disease Control and Prevention (Atlanta, GA) to identify probable or confirmed infection with R. parkeri. During 1998-2007, clinical samples from 12 patients with illnesses epidemiologically and clinically compatible with R. parkeri rickettsiosis were submitted for diagnostic evaluation. Using indirect immunofluorescence antibody assays, immunohistochemistry, polymerase chain reaction assays, and cell culture isolation, we identified 6 confirmed and 6 probable cases of infection with R. parkeri. The aggregate clinical characteristics of these patients revealed a disease similar to but less severe than classically described Rocky Mountain spotted fever. Closer attention to the distinct clinical features of the various spotted fever syndromes that exist in the United States and other countries of the Western hemisphere, coupled with more frequent use of specific confirmatory assays, may unveil several unique diseases that have been identified collectively as Rocky Mountain spotted fever during the past century. Accurate assessments of these distinct infections will ultimately provide a more valid description of the currently recognized distribution, incidence, and case-fatality rate of Rocky Mountain spotted fever.

Tagging like Humans: Diverse and Distinct Image Annotation

KAUST Repository

Wu, Baoyuan

2018-03-31

In this work we propose a new automatic image annotation model, dubbed {\\\\bf diverse and distinct image annotation} (D2IA). The generative model D2IA is inspired by the ensemble of human annotations, which create semantically relevant, yet distinct and diverse tags. In D2IA, we generate a relevant and distinct tag subset, in which the tags are relevant to the image contents and semantically distinct to each other, using sequential sampling from a determinantal point process (DPP) model. Multiple such tag subsets that cover diverse semantic aspects or diverse semantic levels of the image contents are generated by randomly perturbing the DPP sampling process. We leverage a generative adversarial network (GAN) model to train D2IA. Extensive experiments including quantitative and qualitative comparisons, as well as human subject studies, on two benchmark datasets demonstrate that the proposed model can produce more diverse and distinct tags than the state-of-the-arts.

Monoclonal Antibodies Follow Distinct Aggregation Pathways During Production-Relevant Acidic Incubation and Neutralization

DEFF Research Database (Denmark)

Pedersen, Thomas Skamris; Tian, Xinsheng; Thorolfsson, Matthias

2016-01-01

and orthogonal analytical methods, including small-angle X-ray scattering and dynamic light scattering and supplemented the experimental data with crystal structure-based spatial aggregation propensity (SAP) calculations. RESULTS: We revealed distinct solution behaviors between the three mAb models: At acidic p......PURPOSE: Aggregation aspects of therapeutic monoclonal antibodies (mAbs) are of common concern to the pharmaceutical industry. Low pH treatment is applied during affinity purification and to inactivate endogenous retroviruses, directing interest to the mechanisms of acid-induced antibody...... distinguish between reversible and irreversible mAb aggregation pathways at early stages of acidic treatment....

Creating fair lineups for suspects with distinctive features

OpenAIRE

Zarkadi, Theodora; Wade, Kimberley A.; Stewart, Neil

2009-01-01

In their descriptions, eyewitnesses often refer to a culprit's distinctive facial features. However, in a police lineup, selecting the only member with the described distinctive feature is unfair to the suspect and provides the police with little further information. For fair and informative lineups, the distinctive feature should be either replicated across foils or concealed on the target. In the present experiments, replication produced more correct identifications in target-present lineup...

Structural or pigmentary? Origin of the distinctive white stripe on the blue wing of a Morpho butterfly.

Science.gov (United States)

Yoshioka, Shinya; Kinoshita, Shuichi

2006-01-22

A few species of Morpho butterflies have a distinctive white stripe pattern on their structurally coloured blue wings. Since the colour pattern of a butterfly wing is formed as a mosaic of differently coloured scales, several questions naturally arise: are the microstructures the same between the blue and white scales? How is the distinctive whiteness produced, structurally or by means of pigmentation? To answer these questions, we have performed structural and optical investigations of the stripe pattern of a butterfly, Morpho cypris. It is found that besides the dorsal and ventral scale layers, the wing substrate also has the corresponding stripe pattern. Quantitative optical measurements and analysis using a simple model for the wing structure reveal the origin of the higher reflectance which makes the white stripe brighter.

Distinct p53 genomic binding patterns in normal and cancer-derived human cells

Energy Technology Data Exchange (ETDEWEB)

Botcheva K.; McCorkle S. R.; McCombie W. R.; Dunn J. J.; Anderson C. W.

2011-12-15

We report here genome-wide analysis of the tumor suppressor p53 binding sites in normal human cells. 743 high-confidence ChIP-seq peaks representing putative genomic binding sites were identified in normal IMR90 fibroblasts using a reference chromatin sample. More than 40% were located within 2 kb of a transcription start site (TSS), a distribution similar to that documented for individually studied, functional p53 binding sites and, to date, not observed by previous p53 genome-wide studies. Nearly half of the high-confidence binding sites in the IMR90 cells reside in CpG islands, in marked contrast to sites reported in cancer-derived cells. The distinct genomic features of the IMR90 binding sites do not reflect a distinct preference for specific sequences, since the de novo developed p53 motif based on our study is similar to those reported by genome-wide studies of cancer cells. More likely, the different chromatin landscape in normal, compared with cancer-derived cells, influences p53 binding via modulating availability of the sites. We compared the IMR90 ChIPseq peaks to the recently published IMR90 methylome1 and demonstrated that they are enriched at hypomethylated DNA. Our study represents the first genome-wide, de novo mapping of p53 binding sites in normal human cells and reveals that p53 binding sites reside in distinct genomic landscapes in normal and cancer-derived human cells.

Defining poverty as distinctively human

Directory of Open Access Journals (Sweden)

H.P.P. Lötter

2007-05-01

Full Text Available While it is relatively easy for most people to identify human beings suffering from poverty, it is rather more difficult to come to a proper understanding of poverty. In this article the author wants to deepen our understanding of poverty by interpreting the conventional definitions of poverty in a new light. The article starts with a defence of a claim that poverty is a concept uniquely applicable to humans. It then present a critical discussion of the distinction between absolute and relative poverty and it is then argued that a revision of this distinction can provide general standards applicable to humans everywhere.

Two Distinct Moral Mechanisms for Ascribing and Denying Intentionality.

Science.gov (United States)

Ngo, Lawrence; Kelly, Meagan; Coutlee, Christopher G; Carter, R McKell; Sinnott-Armstrong, Walter; Huettel, Scott A

2015-12-04

Philosophers and legal scholars have long theorized about how intentionality serves as a critical input for morality and culpability, but the emerging field of experimental philosophy has revealed a puzzling asymmetry. People judge actions leading to negative consequences as being more intentional than those leading to positive ones. The implications of this asymmetry remain unclear because there is no consensus regarding the underlying mechanism. Based on converging behavioral and neural evidence, we demonstrate that there is no single underlying mechanism. Instead, two distinct mechanisms together generate the asymmetry. Emotion drives ascriptions of intentionality for negative consequences, while the consideration of statistical norms leads to the denial of intentionality for positive consequences. We employ this novel two-mechanism model to illustrate that morality can paradoxically shape judgments of intentionality. This is consequential for mens rea in legal practice and arguments in moral philosophy pertaining to terror bombing, abortion, and euthanasia among others.

Complete identification of E-selectin ligands on neutrophils reveals distinct functions of PSGL-1, ESL-1, and CD44.

Science.gov (United States)

Hidalgo, Andrés; Peired, Anna J; Wild, Martin; Vestweber, Dietmar; Frenette, Paul S

2007-04-01

The selectins and their ligands are required for leukocyte extravasation during inflammation. Several glycoproteins have been suggested to bind to E-selectin in vitro, but the complete identification of its physiological ligands has remained elusive. Here, we showed that E-selectin ligand-1 (ESL-1), P-selectin glycoprotein ligand-1 (PSGL-1), and CD44 encompassed all endothelial-selectin ligand activity on neutrophils by using gene- and RNA-targeted loss of function. PSGL-1 played a major role in the initial leukocyte capture, whereas ESL-1 was critical for converting initial tethers into steady slow rolling. CD44 controlled rolling velocity and mediated E-selectin-dependent redistribution of PSGL-1 and L-selectin to a major pole on slowly rolling leukocytes through p38 signaling. These results suggest distinct and dynamic contributions of these three glycoproteins in selectin-mediated neutrophil adhesion and signaling.

Improvement of the safety regulations in the management of radioactive waste accumulated in the liquid radioactive waste water basins of the PO 'Majak' (Ozersk), the Siberian Chemical Plant (Seversk) and the Mining-Chemical Plant (Zheleznogorsk)

International Nuclear Information System (INIS)

Vishnevski, Y.G.; Kislov, A.I.; Irushkin, V.M.

2002-01-01

One of the most important problems of radiation safety in Russia is the decommissioning of the liquid radioactive waste water basins of the PO 'Majak' (Ozersk), Siberian Chemical Plant (Seversk) and Mining-Chemical Plant (Zheleznogorsk). The liquid radioactive waste water basins were constructed in 1950-1960 for the collection and storage of liquid waste from the radiochemical plants. The potential hazards of the liquid in the radioactive waste water basins are: migration of radionuclides into the soil of the liquid radioactive waste water basin floors; wind-induced carry-over of radionuclides from the liquid radioactive waste water basins; hazards (radiation included) to the environment and population arising in case physical barriers and hydraulic structures are damaged; and criticality hazards. The classification of the liquid radioactive waste water basins were developed based on the collection and analyzes of the information on liquid radioactive waste water basin characteristics and the method of multicriterion expert assessment of potential hazards. Three main directions for the improvement of safety regulation in the management of radioactive waste accumulated in the liquid radioactive waste water basins were defined: 1. Common directions for the improvement of safety regulation in the area of rehabilitation of the territories contaminated with radioactive substances. 2. Common directions for the improvement of safety regulation in the area of rehabilitation of the territories, such as the liquid radioactive waste water basins. 3. Special directions for the regulatory activities in the area of operation and decommissioning of the liquid radioactive waste water basins of the PO 'Majak' (Ozersk), Siberian Chemical Plant (Seversk) and Mining-Chemical Plant (Zheleznogorsk). As a result, concrete recommendations on safety regulation for the management of radioactive waste accumulated in the water basins were developed. (author)

NSAID gastropathy and enteropathy: distinct pathogenesis likely necessitates distinct prevention strategies.

Science.gov (United States)

Wallace, John L

2012-01-01

The mechanisms underlying the ability of nonsteroidal anti-inflammatory drugs (NSAIDs) to cause ulceration in the stomach and proximal duodenum are well understood, and this injury can largely be prevented through suppression of gastric acid secretion (mainly with proton pump inhibitors). In contrast, the pathogenesis of small intestinal injury induced by NSAIDs is less well understood, involving more complex mechanisms than those in the stomach and proximal duodenum. There is clear evidence for important contributions to NSAID enteropathy of enteric bacteria, bile and enterohepatic recirculation of the NSAID. There is no evidence that suppression of gastric acid secretion will reduce the incidence or severity of NSAID enteropathy. Indeed, clinical data suggest little, if any, benefit. Animal studies suggest a significant exacerbation of NSAID enteropathy when proton pump inhibitors are co-administered with the NSAID. This worsening of damage appears to be linked to changes in the number and types of bacteria in the small intestine during proton pump inhibitor therapy. The distinct mechanisms of NSAID-induced injury in the stomach/proximal duodenum versus the more distal small intestine likely dictate distinct strategies for prevention. © 2011 The Author. British Journal of Pharmacology © 2011 The British Pharmacological Society.

Pylon fractures of the ankle: A distinct clinical and radiological entity

International Nuclear Information System (INIS)

Mainwaring, B.L.; Daffner, R.H.; Riemer, B.L.

1987-01-01

Pylon fractures are a distinct clinical and radiological entity that should not be confused with trimalleolar fractures. Radiographic and clinical comparison of 20 cases of each fracture type revealed definite distinguishing features. First, pylon fractures inevitably were associated with profound comminution of the distal tibia. The trimalleolar injury was associated with fractures of the medial, lateral, and posterior malleoli without comminution. Second, in contrast to timalleolar fractures, pylon fractures had intraarticular extension of at least one tibial fracture through the dome of the plafond. Third, 60% of all pylon fractures were associated with a fractured talus; the talus was intact in all trimalleolar fractures. Fourth, the distal tibiofibular syndesmosis was constant in the pylon fractures but was separated in all trimalleolar fractures

Summary of three dimensional pump testing of a fractured rock aquifer in the western Siberian Basin

International Nuclear Information System (INIS)

Nichols, R.L.; Looney, B.B.; Eddy-Dilek, C.A.; Drozhko, E.G.; Glalolenko, Y.V.; Mokrov, Y.G.; Ivanov, I.A.; Glagolev, A.V.; Vasil'kova, N.A.

1996-01-01

A group of scientists from the Savannah River Technology Center and Russia successfully completed a 17 day field investigation of a fractured rock aquifer at the MAYAK PA nuclear production facility in Russia. The test site is located in the western Siberian Basin near the floodplain of the Mishelyak river. The fractured rock aquifer is composed of orphyrites, tuff, tuffbreccia and lava and is overlain by 0.5--12 meters of elluvial and alluvial sediments. A network of 3 uncased wells (176, 1/96, and 2/96) was used to conduct the tests. Wells 176 and 2/96 were used as observation wells and the centrally located well 1/96 was used as the pumping well. Six packers were installed and inflated in each of the observation wells at a depth of up to 85 meters. The use of 6 packers in each well resulted in isolating 7 zones for monitoring. The packers were inflated to different pressures to accommodate the increasing hydrostatic pressure. A straddle packer assembly was installed in the pumping well to allow testing of each of the individual zones isolated in the observation wells. A constant rate pumping test was run on each of the 7 zones. The results of the pumping tests are included in Appendix A. The test provided new information about the nature of the fractured rock aquifers in the vicinity of the Mishelyak river and will be key information in understanding the behavior of contaminants originating from process wastes discharged to Lake Karachi. Results from the tests will be analyzed to determine the hydraulic properties of different zones within the fractured rock aquifer and to determine the most cost effective clean-up approach for the site

[Some problems of the study and representation of Siberian flora biodiversity in connection with its conservation].

Science.gov (United States)

Olonova, M V

2007-01-01

the Siberian flora.

Macromolecular composition of terrestrial and marine organic matter in sediments across the East Siberian Arctic Shelf

Science.gov (United States)

Sparkes, Robert B.; Doğrul Selver, Ayça; Gustafsson, Örjan; Semiletov, Igor P.; Haghipour, Negar; Wacker, Lukas; Eglinton, Timothy I.; Talbot, Helen M.; van Dongen, Bart E.

2016-10-01

Mobilisation of terrestrial organic carbon (terrOC) from permafrost environments in eastern Siberia has the potential to deliver significant amounts of carbon to the Arctic Ocean, via both fluvial and coastal erosion. Eroded terrOC can be degraded during offshore transport or deposited across the wide East Siberian Arctic Shelf (ESAS). Most studies of terrOC on the ESAS have concentrated on solvent-extractable organic matter, but this represents only a small proportion of the total terrOC load. In this study we have used pyrolysis-gas chromatography-mass spectrometry (py-GCMS) to study all major groups of macromolecular components of the terrOC; this is the first time that this technique has been applied to the ESAS. This has shown that there is a strong offshore trend from terrestrial phenols, aromatics and cyclopentenones to marine pyridines. There is good agreement between proportion phenols measured using py-GCMS and independent quantification of lignin phenol concentrations (r2 = 0.67, p radiocarbon data for bulk OC (14COC) which, when coupled with previous measurements, allows us to produce the most comprehensive 14COC map of the ESAS to date. Combining the 14COC and py-GCMS data suggests that the aromatics group of compounds is likely sourced from old, aged terrOC, in contrast to the phenols group, which is likely sourced from modern woody material. We propose that an index of the relative proportions of phenols and pyridines can be used as a novel terrestrial vs. marine proxy measurement for macromolecular organic matter. Principal component analysis found that various terrestrial vs. marine proxies show different patterns across the ESAS, and it shows that multiple river-ocean transects of surface sediments transition from river-dominated to coastal-erosion-dominated to marine-dominated signatures.

Evolutionary dynamics of mammalian karyotypes

Directory of Open Access Journals (Sweden)

Carlo Alberto Redi

2012-12-01

Full Text Available This special volume of Cytogenetic and Genome Research (edited by Roscoe Stanyon, University of Florence and Alexander Graphodatsky, Siberian division of the Russian Academy of Sciences is dedicated to the fascinating long search of the forces behind the evolutionary dynamics of mammalian karyotypes, revealed after the hypotonic miracle of the 1950s....

Crowding in Visual Working Memory Reveals Its Spatial Resolution and the Nature of Its Representations.

Science.gov (United States)

Tamber-Rosenau, Benjamin J; Fintzi, Anat R; Marois, René

2015-09-01

Spatial resolution fundamentally limits any image representation. Although this limit has been extensively investigated for perceptual representations by assessing how neighboring flankers degrade the perception of a peripheral target with visual crowding, the corresponding limit for representations held in visual working memory (VWM) is unknown. In the present study, we evoked crowding in VWM and directly compared resolution in VWM and perception. Remarkably, the spatial resolution of VWM proved to be no worse than that of perception. However, mixture modeling of errors caused by crowding revealed the qualitatively distinct nature of these representations. Perceptual crowding errors arose from both increased imprecision in target representations and substitution of flankers for targets. By contrast, VWM crowding errors arose exclusively from substitutions, which suggests that VWM transforms analog perceptual representations into discrete items. Thus, although perception and VWM share a common resolution limit, exceeding this limit reveals distinct mechanisms for perceiving images and holding them in mind. © The Author(s) 2015.

Multivariate pattern classification reveals autonomic and experiential representations of discrete emotions.

Science.gov (United States)

Kragel, Philip A; Labar, Kevin S

2013-08-01

Defining the structural organization of emotions is a central unresolved question in affective science. In particular, the extent to which autonomic nervous system activity signifies distinct affective states remains controversial. Most prior research on this topic has used univariate statistical approaches in attempts to classify emotions from psychophysiological data. In the present study, electrodermal, cardiac, respiratory, and gastric activity, as well as self-report measures were taken from healthy subjects during the experience of fear, anger, sadness, surprise, contentment, and amusement in response to film and music clips. Information pertaining to affective states present in these response patterns was analyzed using multivariate pattern classification techniques. Overall accuracy for classifying distinct affective states was 58.0% for autonomic measures and 88.2% for self-report measures, both of which were significantly above chance. Further, examining the error distribution of classifiers revealed that the dimensions of valence and arousal selectively contributed to decoding emotional states from self-report, whereas a categorical configuration of affective space was evident in both self-report and autonomic measures. Taken together, these findings extend recent multivariate approaches to study emotion and indicate that pattern classification tools may improve upon univariate approaches to reveal the underlying structure of emotional experience and physiological expression. PsycINFO Database Record (c) 2013 APA, all rights reserved.

Quantitative proteomics and dynamic imaging of the nucleolus reveal distinct responses to UV and ionizing radiation.

Science.gov (United States)

Moore, Henna M; Bai, Baoyan; Boisvert, François-Michel; Latonen, Leena; Rantanen, Ville; Simpson, Jeremy C; Pepperkok, Rainer; Lamond, Angus I; Laiho, Marikki

2011-10-01

The nucleolus is a nuclear organelle that coordinates rRNA transcription and ribosome subunit biogenesis. Recent proteomic analyses have shown that the nucleolus contains proteins involved in cell cycle control, DNA processing and DNA damage response and repair, in addition to the many proteins connected with ribosome subunit production. Here we study the dynamics of nucleolar protein responses in cells exposed to stress and DNA damage caused by ionizing and ultraviolet (UV) radiation in diploid human fibroblasts. We show using a combination of imaging and quantitative proteomics methods that nucleolar substructure and the nucleolar proteome undergo selective reorganization in response to UV damage. The proteomic responses to UV include alterations of functional protein complexes such as the SSU processome and exosome, and paraspeckle proteins, involving both decreases and increases in steady state protein ratios, respectively. Several nonhomologous end-joining proteins (NHEJ), such as Ku70/80, display similar fast responses to UV. In contrast, nucleolar proteomic responses to IR are both temporally and spatially distinct from those caused by UV, and more limited in terms of magnitude. With the exception of the NHEJ and paraspeckle proteins, where IR induces rapid and transient changes within 15 min of the damage, IR does not alter the ratios of most other functional nucleolar protein complexes. The rapid transient decrease of NHEJ proteins in the nucleolus indicates that it may reflect a response to DNA damage. Our results underline that the nucleolus is a specific stress response organelle that responds to different damage and stress agents in a unique, damage-specific manner.

Strategy revealing phenotypic differences among synthetic oscillator designs.

Science.gov (United States)

Lomnitz, Jason G; Savageau, Michael A

2014-09-19

Considerable progress has been made in identifying and characterizing the component parts of genetic oscillators, which play central roles in all organisms. Nonlinear interaction among components is sufficiently complex that mathematical models are required to elucidate their elusive integrated behavior. Although natural and synthetic oscillators exhibit common architectures, there are numerous differences that are poorly understood. Utilizing synthetic biology to uncover basic principles of simpler circuits is a way to advance understanding of natural circadian clocks and rhythms. Following this strategy, we address the following questions: What are the implications of different architectures and molecular modes of transcriptional control for the phenotypic repertoire of genetic oscillators? Are there designs that are more realizable or robust? We compare synthetic oscillators involving one of three architectures and various combinations of the two modes of transcriptional control using a methodology that provides three innovations: a rigorous definition of phenotype, a procedure for deconstructing complex systems into qualitatively distinct phenotypes, and a graphical representation for illuminating the relationship between genotype, environment, and the qualitatively distinct phenotypes of a system. These methods provide a global perspective on the behavioral repertoire, facilitate comparisons of alternatives, and assist the rational design of synthetic gene circuitry. In particular, the results of their application here reveal distinctive phenotypes for several designs that have been studied experimentally as well as a best design among the alternatives that has yet to be constructed and tested.

Crystal structure of a small heat-shock protein from Xylella fastidiosa reveals a distinct high-order structure.

Science.gov (United States)

Fonseca, Emanuella Maria Barreto; Scorsato, Valéria; Dos Santos, Marcelo Leite; Júnior, Atilio Tomazini; Tada, Susely Ferraz Siqueira; Dos Santos, Clelton Aparecido; de Toledo, Marcelo Augusto Szymanski; de Souza, Anete Pereira; Polikarpov, Igor; Aparicio, Ricardo

2017-04-01

Citrus variegated chlorosis is a disease that attacks economically important citrus plantations and is caused by the plant-pathogenic bacterium Xylella fastidiosa. In this work, the structure of a small heat-shock protein from X. fastidiosa (XfsHSP17.9) is reported. The high-order structures of small heat-shock proteins from other organisms are arranged in the forms of double-disc, hollow-sphere or spherical assemblies. Unexpectedly, the structure reported here reveals a high-order architecture forming a nearly square cavity.

Community microrespirometry and molecular analyses reveal a diverse energy economy in Great Boiling Spring and Sandy's Spring West in the U.S. Great Basin.

Science.gov (United States)

Murphy, Caitlin N; Dodsworth, Jeremy A; Babbitt, Aaron B; Hedlund, Brian P

2013-05-01

Microrespirometry showed that several organic and inorganic electron donors stimulated oxygen consumption in two ∼80°C springs. Sediment and planktonic communities were structurally and functionally distinct, and quantitative PCR revealed catabolically distinct subpopulations of Thermocrinis. This study suggests that a variety of chemolithotrophic metabolisms operate simultaneously in these springs.

The New Data on Dynamics of Permian - Triassic Magmatic Activity on Siberian Platform: Paleomagnetic Results from Tunguska Syncline and Angara - Taseeva Depression

Science.gov (United States)

Latyshev, A.; Veselovskiy, R. V.

2015-12-01

We perform the new paleomagnetic data from intrusive complexes of two regions of Siberian Trap province (Angara - Taseeva depression and Tunguska syncline). Results of paleomagnetic and geological investigation indicate that two different patterns of magmatic process took place in these regions. In Angara - Taseeva depression short intense peaks of magmatic activity alternate with more prolonged periods of relative quietness. These bursts of magmatic activity resulted in intruding of large dolerite sills. In the central part of Tunguska syncline local intrusive events took place on the background of effusive volcanic activity. Considering the new data together with previous paleomagnetic results from Norilsk and Maymecha - Kotuy regions (Pavlov et al., 2015), western part of Viluy basin (Konstantinov et al., 2014) and Angara-Taseeva depression (Latyshev et al., 2013), it can be concluded that pulsating character of magmatic activity is typical for the periphery of Tunguska syncline. However, the central part of Tunguska syncline is characterized by more prolonged and even style of volcanic process and less widescale intrusive events. This conclusion is important for understanding of LIPs formation and mantle plumes dynamics. This study was funded by grants RFBR # 14-05-31447 and 15-35-20599 and Ministry of Education and Science of the Russian Federation (grant 14.Z50.31.0017).

Use of the K-ABC with Children in Zaire, Africa: An Evaluation of the Sequential-Simultaneous Processing Distinction within an Intercultural Context.

Science.gov (United States)

Giordani, Bruno; And Others

1996-01-01

Evaluation of the Kaufman Assessment Battery for Children (K-ABC) with 130 primary school children in Zaire revealed three findings: (1) the distinction between sequential processing and simultaneous processing was valid; (2) the K-ABC discriminated effectively among grade levels, health and family environment variables, and tribal membership; and…