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Sample records for short regularly spaced

  1. Regular capacities on metrizable spaces

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    T. M. Cherkovskyi

    2014-07-01

    Full Text Available It is proved that for a (not necessarily compact metric space: the metrics on the space of capacities in the sense of Zarichnyi and Prokhorov are equal; completeness of the space of capacities is equivalent to completeness of the original space. It is shown that for the capacities on metrizable spaces the properties of $\\omega$-smoothness and of $\\tau$-smoothness are equivalent precisely on the separable spaces, and the properties of $\\omega$-smoothness and of regularity w.r.t. some (then w.r.t. any admissible metric are equivalent precisely on the compact spaces.

  2. Regularization methods in Banach spaces

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    Schuster, Thomas; Hofmann, Bernd; Kazimierski, Kamil S

    2012-01-01

    Regularization methods aimed at finding stable approximate solutions are a necessary tool to tackle inverse and ill-posed problems. Usually the mathematical model of an inverse problem consists of an operator equation of the first kind and often the associated forward operator acts between Hilbert spaces. However, for numerous problems the reasons for using a Hilbert space setting seem to be based rather on conventions than on an approprimate and realistic model choice, so often a Banach space setting would be closer to reality. Furthermore, sparsity constraints using general Lp-norms or the B

  3. A short proof of increased parabolic regularity

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    Stephen Pankavich

    2015-08-01

    Full Text Available We present a short proof of the increased regularity obtained by solutions to uniformly parabolic partial differential equations. Though this setting is fairly introductory, our new method of proof, which uses a priori estimates and an inductive method, can be extended to prove analogous results for problems with time-dependent coefficients, advection-diffusion or reaction diffusion equations, and nonlinear PDEs even when other tools, such as semigroup methods or the use of explicit fundamental solutions, are unavailable.

  4. Regular matrix transformation on triple sequence spaces

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    Shyamal Debnath

    2017-10-01

    Full Text Available The main aim of this paper is to introduce the necessary and sufficient condition for a particular type of transformation of the form A: (a......  be regular from a triple sequence space to another triple sequence space.

  5. Model Spaces of Regularity Structures for Space-Fractional SPDEs

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    Berglund, Nils; Kuehn, Christian

    2017-07-01

    We study model spaces, in the sense of Hairer, for stochastic partial differential equations involving the fractional Laplacian. We prove that the fractional Laplacian is a singular kernel suitable to apply the theory of regularity structures. Our main contribution is to study the dependence of the model space for a regularity structure on the three-parameter problem involving the spatial dimension, the polynomial order of the nonlinearity, and the exponent of the fractional Laplacian. The goal is to investigate the growth of the model space under parameter variation. In particular, we prove several results in the approaching subcriticality limit leading to universal growth exponents of the regularity structure. A key role is played by the viewpoint that model spaces can be identified with families of rooted trees. Our proofs are based upon a geometrical construction similar to Newton polygons for classical Taylor series and various combinatorial arguments. We also present several explicit examples listing all elements with negative homogeneity by implementing a new symbolic software package to work with regularity structures. We use this package to illustrate our analytical results and to obtain new conjectures regarding coarse-grained network measures for model spaces.

  6. Lattice-Valued Convergence Spaces: Weaker Regularity and p-Regularity

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    Lingqiang Li

    2014-01-01

    Full Text Available By using some lattice-valued Kowalsky’s dual diagonal conditions, some weaker regularities for Jäger’s generalized stratified L-convergence spaces and those for Boustique et al’s stratified L-convergence spaces are defined and studied. Here, the lattice L is a complete Heyting algebra. Some characterizations and properties of weaker regularities are presented. For Jäger’s generalized stratified L-convergence spaces, a notion of closures of stratified L-filters is introduced and then a new p-regularity is defined. At last, the relationships between p-regularities and weaker regularities are established.

  7. Analysis of bubble plume spacing produced by regular breaking waves

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    Phaksopa, J.; Haller, M. C.

    2012-12-01

    The breaking wave process in the ocean is a significant mechanism for energy dissipation, splash, and entrainment of air. The relationship between breaking waves and bubble plume characteristics is still a mystery because of the complexity of the breaking wave mechanism. This study takes a unique approach to quantitatively analyze bubble plumes produced by regular breaking waves. Various previous studies have investigated the formation and the characteristics of bubble plumes using either field observations, laboratory experiments, or numerical modeling However, in most observational work the plume characteristics have been studied from the underneath the water surface. In addition, though numerical simulations are able to include much of the important physics, the computational costs are high and bubble plume events are only simulated for short times. Hence, bubble plume evolution and generation throughout the surf zone is not yet computationally feasible. In the present work we take a unique approach to analyzing bubble plumes. These data may be of use for model/data comparisons as numerical simulations become more tractable. The remotely sensed video data from freshwater breaking waves in the OSU Large Wave Flume (Catalan and Haller, 2008) are analyzed. The data set contains six different regular wave conditions and the video intensity data are used to estimate the spacing of plume events (wavenumber spectrum), to calculate the spectral width (i.e. the range of plume spacing), and to relate these with the wave conditions. The video intensity data capture the evolution of the wave passage over a fixed bed arranged in a bar-trough morphology. Bright regions represent the moving path or trajectory coincident with bubble plume of each wave. It also shows the bubble foam were generated and released from wave crest shown in the form of bubble tails with almost regular spacing for each wave. The bubble tails show that most bubbles did not move along with wave. For the

  8. On RG-spaces and the regularity degree

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    R. Raphael

    2006-04-01

    Full Text Available We continue the study of a lattice-ordered ring G(X, associated with the ring C(X. Following, X is called RG when G(X = C(Xδ. An RG-space must have a dense set of very weak P-points. It must have a dense set of almost-P-points if Xδ is Lindelöf, or if the continuum hypothesis holds and C(X has small cardinality. Spaces which are RG must have finite Krull dimension when taken with respect to the prime z-ideals of C(X. There is a notion of regularity degree defined via the functions in G(X. Pseudocompact spaces and metric spaces of finite regularity degree are characterized.

  9. Dimensional regularization in position space and a forest formula for regularized Epstein-Glaser renormalization

    Energy Technology Data Exchange (ETDEWEB)

    Keller, Kai Johannes

    2010-04-15

    The present work contains a consistent formulation of the methods of dimensional regularization (DimReg) and minimal subtraction (MS) in Minkowski position space. The methods are implemented into the framework of perturbative Algebraic Quantum Field Theory (pAQFT). The developed methods are used to solve the Epstein-Glaser recursion for the construction of time-ordered products in all orders of causal perturbation theory. A solution is given in terms of a forest formula in the sense of Zimmermann. A relation to the alternative approach to renormalization theory using Hopf algebras is established. (orig.)

  10. Regularity and predictability of human mobility in personal space.

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    Daniel Austin

    Full Text Available Fundamental laws governing human mobility have many important applications such as forecasting and controlling epidemics or optimizing transportation systems. These mobility patterns, studied in the context of out of home activity during travel or social interactions with observations recorded from cell phone use or diffusion of money, suggest that in extra-personal space humans follow a high degree of temporal and spatial regularity - most often in the form of time-independent universal scaling laws. Here we show that mobility patterns of older individuals in their home also show a high degree of predictability and regularity, although in a different way than has been reported for out-of-home mobility. Studying a data set of almost 15 million observations from 19 adults spanning up to 5 years of unobtrusive longitudinal home activity monitoring, we find that in-home mobility is not well represented by a universal scaling law, but that significant structure (predictability and regularity is uncovered when explicitly accounting for contextual data in a model of in-home mobility. These results suggest that human mobility in personal space is highly stereotyped, and that monitoring discontinuities in routine room-level mobility patterns may provide an opportunity to predict individual human health and functional status or detect adverse events and trends.

  11. Regularity and predictability of human mobility in personal space.

    Science.gov (United States)

    Austin, Daniel; Cross, Robin M; Hayes, Tamara; Kaye, Jeffrey

    2014-01-01

    Fundamental laws governing human mobility have many important applications such as forecasting and controlling epidemics or optimizing transportation systems. These mobility patterns, studied in the context of out of home activity during travel or social interactions with observations recorded from cell phone use or diffusion of money, suggest that in extra-personal space humans follow a high degree of temporal and spatial regularity - most often in the form of time-independent universal scaling laws. Here we show that mobility patterns of older individuals in their home also show a high degree of predictability and regularity, although in a different way than has been reported for out-of-home mobility. Studying a data set of almost 15 million observations from 19 adults spanning up to 5 years of unobtrusive longitudinal home activity monitoring, we find that in-home mobility is not well represented by a universal scaling law, but that significant structure (predictability and regularity) is uncovered when explicitly accounting for contextual data in a model of in-home mobility. These results suggest that human mobility in personal space is highly stereotyped, and that monitoring discontinuities in routine room-level mobility patterns may provide an opportunity to predict individual human health and functional status or detect adverse events and trends.

  12. Space Alignment Based on Regularized Inversion Precoding in Cognitive Transmission

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    R. Yao

    2015-09-01

    Full Text Available For a two-tier Multiple-Input Multiple-Output (MIMO cognitive network with common receiver, the precoding matrix has a compact relationship with the capacity performance in the unlicensed secondary system. To increase the capacity of secondary system, an improved precoder based on the idea of regularized inversion for secondary transmitter is proposed. An iterative space alignment algorithm is also presented to ensure the Quality of Service (QoS for primary system. The simulations reveal that, on the premise of achieving QoS for primary system, our proposed algorithm can get larger capacity in secondary system at low Signal-to-Noise Ratio (SNR, which proves the effectiveness of the algorithm.

  13. Short-term Use of Cinacalcet in Children on Regular Hemodialysis ...

    African Journals Online (AJOL)

    Case series: We report here the effect of short term use of cinacalcet on sHPT in two children on regular hemodialysis for CKD stage 5. Both children had very high PTH level which failed to be controlled with vitamin D3 and phosphate binders. We started cinacalcet therapy at a dose of 30 mg/day for both of them for duration ...

  14. High-resolution spectral analysis of unevenly spaced data using a regularization approach

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    Seghouani, N.

    2017-07-01

    The problem of estimating the power spectrum of unevenly spaced time series is considered. Indeed, this problem is quite common in ground-based astronomy, and the use of classical methods leads to aliased frequency detection. Moreover, the spectral resolution is limited by the observation time (Shannon-Nyquist law). We propose a regularized method to estimate the power spectrum of such irregular time series. We also show that with this approach, one can achieve high resolution. The method is described in detail and applied to simulated data as well as helioseismic velocities. A fast algorithm is also presented for the numerical implementation. The results show that accurate frequency estimation can be obtained from short, noisy and irregularly sampled signals.

  15. A Banach Space Regularization Approach for Multifrequency Microwave Imaging

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    Claudio Estatico

    2016-01-01

    Full Text Available A method for microwave imaging of dielectric targets is proposed. It is based on a tomographic approach in which the field scattered by an unknown target (and collected in a proper observation domain is inverted by using an inexact-Newton method developed in Lp Banach spaces. In particular, the extension of the approach to multifrequency data processing is reported. The mathematical formulation of the new method is described and the results of numerical simulations are reported and discussed, analyzing the behavior of the multifrequency processing technique combined with the Banach spaces reconstruction method.

  16. Visualization of Sound Waves Using Regularly Spaced Soap Films

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    Elias, F.; Hutzler, S.; Ferreira, M. S.

    2007-01-01

    We describe a novel demonstration experiment for the visualization and measurement of standing sound waves in a tube. The tube is filled with equally spaced soap films whose thickness varies in response to the amplitude of the sound wave. The thickness variations are made visible based on optical interference. The distance between two antinodes is…

  17. Clustered regularly interspaced short palindromic repeats (CRISPRs) for the genotyping of bacterial pathogens.

    Science.gov (United States)

    Grissa, Ibtissem; Vergnaud, Gilles; Pourcel, Christine

    2009-01-01

    Clustered regularly interspaced short palindromic repeats (CRISPRs) are DNA sequences composed of a succession of repeats (23- to 47-bp long) separated by unique sequences called spacers. Polymorphism can be observed in different strains of a species and may be used for genotyping. We describe protocols and bioinformatics tools that allow the identification of CRISPRs from sequenced genomes, their comparison, and their component determination (the direct repeats and the spacers). A schematic representation of the spacer organization can be produced, allowing an easy comparison between strains.

  18. Heterogeneous Diversity of Spacers within CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)

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    He, Jiankui; Deem, Michael W.

    2010-09-01

    Clustered regularly interspaced short palindromic repeats (CRISPR) in bacterial and archaeal DNA have recently been shown to be a new type of antiviral immune system in these organisms. We here study the diversity of spacers in CRISPR under selective pressure. We propose a population dynamics model that explains the biological observation that the leader-proximal end of CRISPR is more diversified and the leader-distal end of CRISPR is more conserved. This result is shown to be in agreement with recent experiments. Our results show that the CRISPR spacer structure is influenced by and provides a record of the viral challenges that bacteria face.

  19. Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes

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    Al-Attar, S.; Westra, E.R.; Oost, van der J.; Brouns, S.J.J.

    2011-01-01

    Many prokaryotes contain the recently discovered defense system against mobile genetic elements. This defense system contains a unique type of repetitive DNA stretches, termed Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs). CRISPRs consist of identical repeated DNA sequences

  20. Short implant to support maxillary restorations: bone stress analysis using regular and switching platform.

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    de Carvalho, Nivaldo Antônio; de Almeida, Erika Oliveira; Rocha, Eduardo Passos; Freitas, Amílcar Chagas; Anchieta, Rodolfo Bruniera; Kina, Sidney

    2012-05-01

    The aim of this study was to evaluate stress distribution on peri-implant bone simulating the influence of implants with different lengths on regular and switching platforms in the anterior maxilla by means of three-dimensional finite element analysis. Four mathematical models of a central incisor supported by an external hexagon implant (diameter, 5.0 mm) were created, varying the length (15.0 mm for long implants [L] and 7.0 mm for short implants [S]) and the diameter of the abutment platform (5.0 mm for regular models [R] and 4.1 mm for switching models [S]). The models were created using the Mimics 11.11 (Materialise) and SolidWorks 2010 (Inovart) software. Numerical analysis was performed using ANSYS Workbench 10.0 (Swanson Analysis System). Oblique forces (100 N) were applied to the palatine surface of the central incisor. The bone/implant interface was considered perfectly integrated. Maximum (σ(max)) and minimum (σ(min)) principal stress values were obtained. For the cortical bone, the highest stress values (σ(max)) were observed in the SR (73.7 MPa) followed by LR (65.1 MPa), SS (63.6 MPa), and LS (54.2 MPa). For the trabecular bone, the highest stress values (σ(max)) were observed in the SS (8.87 MPa) followed by the SR (8.32 MPa), LR (7.49 MPa), and LS (7.08 MPa). The influence of switching platform was more evident for the cortical bone in comparison with the trabecular bone for the short and long implants. The long implants showed lower stress values in comparison to the short implants, mainly when the switching platform was used.

  1. Function and Regulation of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR / CRISPR Associated (Cas Systems

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    Peter C. Fineran

    2012-10-01

    Full Text Available Phages are the most abundant biological entities on earth and pose a constant challenge to their bacterial hosts. Thus, bacteria have evolved numerous ‘innate’ mechanisms of defense against phage, such as abortive infection or restriction/modification systems. In contrast, the clustered regularly interspaced short palindromic repeats (CRISPR systems provide acquired, yet heritable, sequence-specific ‘adaptive’ immunity against phage and other horizontally-acquired elements, such as plasmids. Resistance is acquired following viral infection or plasmid uptake when a short sequence of the foreign genome is added to the CRISPR array. CRISPRs are then transcribed and processed, generally by CRISPR associated (Cas proteins, into short interfering RNAs (crRNAs, which form part of a ribonucleoprotein complex. This complex guides the crRNA to the complementary invading nucleic acid and targets this for degradation. Recently, there have been rapid advances in our understanding of CRISPR/Cas systems. In this review, we will present the current model(s of the molecular events involved in both the acquisition of immunity and interference stages and will also address recent progress in our knowledge of the regulation of CRISPR/Cas systems.

  2. Function and regulation of clustered regularly interspaced short palindromic repeats (CRISPR) / CRISPR associated (Cas) systems.

    Science.gov (United States)

    Richter, Corinna; Chang, James T; Fineran, Peter C

    2012-10-19

    Phages are the most abundant biological entities on earth and pose a constant challenge to their bacterial hosts. Thus, bacteria have evolved numerous 'innate' mechanisms of defense against phage, such as abortive infection or restriction/modification systems. In contrast, the clustered regularly interspaced short palindromic repeats (CRISPR) systems provide acquired, yet heritable, sequence-specific 'adaptive' immunity against phage and other horizontally-acquired elements, such as plasmids. Resistance is acquired following viral infection or plasmid uptake when a short sequence of the foreign genome is added to the CRISPR array. CRISPRs are then transcribed and processed, generally by CRISPR associated (Cas) proteins, into short interfering RNAs (crRNAs), which form part of a ribonucleoprotein complex. This complex guides the crRNA to the complementary invading nucleic acid and targets this for degradation. Recently, there have been rapid advances in our understanding of CRISPR/Cas systems. In this review, we will present the current model(s) of the molecular events involved in both the acquisition of immunity and interference stages and will also address recent progress in our knowledge of the regulation of CRISPR/Cas systems.

  3. Assembling the Streptococcus thermophilus clustered regularly interspaced short palindromic repeats (CRISPR) array for multiplex DNA targeting.

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    Guo, Lijun; Xu, Kun; Liu, Zhiyuan; Zhang, Cunfang; Xin, Ying; Zhang, Zhiying

    2015-06-01

    In addition to the advantages of scalable, affordable, and easy to engineer, the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein (Cas) technology is superior for multiplex targeting, which is laborious and inconvenient when achieved by cloning multiple gRNA expressing cassettes. Here, we report a simple CRISPR array assembling method which will facilitate multiplex targeting usage. First, the Streptococcus thermophilus CRISPR3/Cas locus was cloned. Second, different CRISPR arrays were assembled with different crRNA spacers. Transformation assays using different Escherichia coli strains demonstrated efficient plasmid DNA targeting, and we achieved targeting efficiency up to 95% with an assembled CRISPR array with three crRNA spacers. Copyright © 2015 Elsevier Inc. All rights reserved.

  4. [Clustered regularly interspaced short palindromic repeats (CRISPR) site in Bacillus anthracis].

    Science.gov (United States)

    Gao, Zhiqi; Wang, Dongshu; Feng, Erling; Wang, Bingxiang; Hui, Yiming; Han, Shaobo; Jiao, Lei; Liu, Xiankai; Wang, Hengliang

    2014-11-04

    To investigate the polymorphism of clustered regularly interspaced short palindromic repeats (CRISPR) in Bacillu santhracis and the application to molecular typing based on the polymorphism of CRISPR in B. anthracis. We downloaded the whole genome sequence of 6 B. anthracis strains and extracted the CRISPR sites. We designed the primers of CRISPR sites and amplified the CRISPR fragments in 193 B. anthracis strains by PCR and sequenced these fragments. In order to reveal the polymorphism of CRISPR in B. anthracis, wealigned all the extracted sequences and sequenced results by local blasting. At the same time, we also analyzed the CRISPR sites in B. cereus and B. thuringiensis. We did not find any polymorphism of CRISPR in B. anthracis. The molecular typing approach based on CRISPR polymorphism is not suitable for B. anthracis, but it is possible for us to distinguish B. anthracis from B. cereus and B. thuringiensis.

  5. Measurement of thermal radiation using regular glass optics and short-wave infrared detectors.

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    Yoon, H W; Eppeldauer, G P

    2008-01-21

    The measurement of thermal radiation from ambient-temperature objects using short-wave infrared detectors and regular glass optics is described. The detectors are chosen to operate in the 2.0 microm to 2.5 microm atmospheric window. Selection of detectors with high shunt resistance along with the 4-stage thermo-electric cooling of the detectors to -85 degrees C results in detectivity, D*, of 4 x 10(13) cm Hz(1/2)/W which is near the background limited performance at 295 K. Furthermore, the use of regular-glass commercial optics to collect the thermal radiation results in diffraction-limited imaging. The use of a radiation thermometer constructed with these elements for the measurement of a blackbody from 20 degrees C to 50 degrees C results in noise-equivalent temperature difference (NETD) of thermal sensors also leads to lower sensitivity to the emissivity of the object in determining the temperature of the object. These elements are used to construct a calibrator for an infrared collimator, and such a system demonstrates noise-equivalent irradiances of thermal infrared detectors.

  6. Clustered regularly interspaced short palindromic repeats (CRISPRs) analysis of members of the Mycobacterium tuberculosis complex.

    Science.gov (United States)

    Botelho, Ana; Canto, Ana; Leão, Célia; Cunha, Mónica V

    2015-01-01

    Typical CRISPR (clustered, regularly interspaced, short palindromic repeat) regions are constituted by short direct repeats (DRs), interspersed with similarly sized non-repetitive spacers, derived from transmissible genetic elements, acquired when the cell is challenged with foreign DNA. The analysis of the structure, in number and nature, of CRISPR spacers is a valuable tool for molecular typing since these loci are polymorphic among strains, originating characteristic signatures. The existence of CRISPR structures in the genome of the members of Mycobacterium tuberculosis complex (MTBC) enabled the development of a genotyping method, based on the analysis of the presence or absence of 43 oligonucleotide spacers separated by conserved DRs. This method, called spoligotyping, consists on PCR amplification of the DR chromosomal region and recognition after hybridization of the spacers that are present. The workflow beneath this methodology implies that the PCR products are brought onto a membrane containing synthetic oligonucleotides that have complementary sequences to the spacer sequences. Lack of hybridization of the PCR products to a specific oligonucleotide sequence indicates absence of the correspondent spacer sequence in the examined strain. Spoligotyping gained great notoriety as a robust identification and typing tool for members of MTBC, enabling multiple epidemiological studies on human and animal tuberculosis.

  7. Total variation regularization in measurement and image space for PET reconstruction

    KAUST Repository

    Burger, M

    2014-09-18

    © 2014 IOP Publishing Ltd. The aim of this paper is to test and analyse a novel technique for image reconstruction in positron emission tomography, which is based on (total variation) regularization on both the image space and the projection space. We formulate our variational problem considering both total variation penalty terms on the image and on an idealized sinogram to be reconstructed from a given Poisson distributed noisy sinogram. We prove existence, uniqueness and stability results for the proposed model and provide some analytical insight into the structures favoured by joint regularization. For the numerical solution of the corresponding discretized problem we employ the split Bregman algorithm and extensively test the approach in comparison to standard total variation regularization on the image. The numerical results show that an additional penalty on the sinogram performs better on reconstructing images with thin structures.

  8. On rarely generalized regular fuzzy continuous functions in fuzzy topological spaces

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    Appachi Vadivel

    2016-11-01

    Full Text Available In this paper, we introduce the concept of rarely generalized regular fuzzy continuous functions in the sense of A.P. Sostak's and Ramadan is introduced. Some interesting properties and characterizations of them are investigated. Also, some applications to fuzzy compact spaces are established.

  9. A Regularity Criterion for the 3D Incompressible Magnetohydrodynamics Equations in the Multiplier Spaces

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    Chunhong Tian

    2017-01-01

    Full Text Available We are concerned with the regularity criterion for weak solutions to the 3D incompressible MHD equations in this paper. We show that if some partial derivatives of the velocity components and magnetic components belong to the multiplier spaces, then the solution actually is smooth on (0,T.

  10. Short communication: Determination of Salmonella clustered regularly interspaced short palindromic repeats (CRISPR) diversity on dairy farms in Wisconsin and Minnesota.

    Science.gov (United States)

    Wehnes, C A; Rehberger, T G; Barrangou, R; Smith, A H

    2014-10-01

    Salmonella enterica ssp. enterica is a foodborne pathogen able to cause disease in both humans and animals. Diverse serovars of this pathogen exist, some of which are host specific, causing a range of clinical symptoms from asymptomatic infection through morbidity and mortality. According to a 2007 survey by the USDA National Animal Health Monitoring System, fecal shedding of Salmonella from healthy cows occurs on 39.7% of dairy farms in the United States. Certain serovars are frequently isolated from dairy farms and the majority of isolates from the National Animal Health Monitoring System study were represented by 5 serovars; however, genotypic diversity was not examined. The objective of this study was to determine the diversity of clustered regularly interspaced short palindromic repeats (CRISPR) loci in Salmonella collected from 8 dairy farms with a previous history of salmonellosis. None of the cows or calves sampled on 2 of the 8 dairy farms were shedding Salmonella, although Salmonella was detected in a cow bedding sample on 1 of these farms. Salmonella populations were discrete on each farm, according to CRISPR typing, with the exception of an Anatum var. 15+ type on farms 5 and 6 and the Montevideo type on farms 1 and 2. One to 4 distinct CRISPR genotypes were identified per farm. The CRISPR typing differed within serovars, as Montevideo, Anatum var. 15+, and Muenster serovars had no overlap of spacer content, even on the same farm, reflecting between- and within-serovar genetic diversity. The dynamic nature of Salmonella populations was shown in a farm that was sampled longitudinally over 13.5 mo. Changes in serovar from 3,19:-:z27 to Montevideo was observed between the first sampling time and 8 mo later, with concomitant change in CRISPR alleles. The results indicate that Salmonella strains present in smaller dairy herds (<500 head) are specific to that farm and new Salmonella strains may emerge over time. Copyright © 2014 American Dairy Science

  11. Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats.

    Science.gov (United States)

    Cui, Yujun; Li, Yanjun; Gorgé, Olivier; Platonov, Mikhail E; Yan, Yanfeng; Guo, Zhaobiao; Pourcel, Christine; Dentovskaya, Svetlana V; Balakhonov, Sergey V; Wang, Xiaoyi; Song, Yajun; Anisimov, Andrey P; Vergnaud, Gilles; Yang, Ruifu

    2008-07-09

    Yersinia pestis, the pathogen of plague, has greatly influenced human history on a global scale. Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR), an element participating in immunity against phages' invasion, is composed of short repeated sequences separated by unique spacers and provides the basis of the spoligotyping technology. In the present research, three CRISPR loci were analyzed in 125 strains of Y. pestis from 26 natural plague foci of China, the former Soviet Union and Mongolia were analyzed, for validating CRISPR-based genotyping method and better understanding adaptive microevolution of Y. pestis. Using PCR amplification, sequencing and online data processing, a high degree of genetic diversity was revealed in all three CRISPR elements. The distribution of spacers and their arrays in Y. pestis strains is strongly region and focus-specific, allowing the construction of a hypothetic evolutionary model of Y. pestis. This model suggests transmission route of microtus strains that encircled Takla Makan Desert and ZhunGer Basin. Starting from Tadjikistan, one branch passed through the Kunlun Mountains, and moved to the Qinghai-Tibet Plateau. Another branch went north via the Pamirs Plateau, the Tianshan Mountains, the Altai Mountains and the Inner Mongolian Plateau. Other Y. pestis lineages might be originated from certain areas along those routes. CRISPR can provide important information for genotyping and evolutionary research of bacteria, which will help to trace the source of outbreaks. The resulting data will make possible the development of very low cost and high-resolution assays for the systematic typing of any new isolate.

  12. Insight into microevolution of Yersinia pestis by clustered regularly interspaced short palindromic repeats.

    Directory of Open Access Journals (Sweden)

    Yujun Cui

    Full Text Available BACKGROUND: Yersinia pestis, the pathogen of plague, has greatly influenced human history on a global scale. Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR, an element participating in immunity against phages' invasion, is composed of short repeated sequences separated by unique spacers and provides the basis of the spoligotyping technology. In the present research, three CRISPR loci were analyzed in 125 strains of Y. pestis from 26 natural plague foci of China, the former Soviet Union and Mongolia were analyzed, for validating CRISPR-based genotyping method and better understanding adaptive microevolution of Y. pestis. METHODOLOGY/PRINCIPAL FINDINGS: Using PCR amplification, sequencing and online data processing, a high degree of genetic diversity was revealed in all three CRISPR elements. The distribution of spacers and their arrays in Y. pestis strains is strongly region and focus-specific, allowing the construction of a hypothetic evolutionary model of Y. pestis. This model suggests transmission route of microtus strains that encircled Takla Makan Desert and ZhunGer Basin. Starting from Tadjikistan, one branch passed through the Kunlun Mountains, and moved to the Qinghai-Tibet Plateau. Another branch went north via the Pamirs Plateau, the Tianshan Mountains, the Altai Mountains and the Inner Mongolian Plateau. Other Y. pestis lineages might be originated from certain areas along those routes. CONCLUSIONS/SIGNIFICANCE: CRISPR can provide important information for genotyping and evolutionary research of bacteria, which will help to trace the source of outbreaks. The resulting data will make possible the development of very low cost and high-resolution assays for the systematic typing of any new isolate.

  13. Lactobacillus buchneri Genotyping on the Basis of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Locus Diversity

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    Briner, Alexandra E.

    2014-01-01

    Clustered regularly interspaced short palindromic repeats (CRISPR) in combination with associated sequences (cas) constitute the CRISPR-Cas immune system, which uptakes DNA from invasive genetic elements as novel “spacers” that provide a genetic record of immunization events. We investigated the potential of CRISPR-based genotyping of Lactobacillus buchneri, a species relevant for commercial silage, bioethanol, and vegetable fermentations. Upon investigating the occurrence and diversity of CRISPR-Cas systems in Lactobacillus buchneri genomes, we observed a ubiquitous occurrence of CRISPR arrays containing a 36-nucleotide (nt) type II-A CRISPR locus adjacent to four cas genes, including the universal cas1 and cas2 genes and the type II signature gene cas9. Comparative analysis of CRISPR spacer content in 26 L. buchneri pickle fermentation isolates associated with spoilage revealed 10 unique locus genotypes that contained between 9 and 29 variable spacers. We observed a set of conserved spacers at the ancestral end, reflecting a common origin, as well as leader-end polymorphisms, reflecting recent divergence. Some of these spacers showed perfect identity with phage sequences, and many spacers showed homology to Lactobacillus plasmid sequences. Following a comparative analysis of sequences immediately flanking protospacers that matched CRISPR spacers, we identified a novel putative protospacer-adjacent motif (PAM), 5′-AAAA-3′. Overall, these findings suggest that type II-A CRISPR-Cas systems are valuable for genotyping of L. buchneri. PMID:24271175

  14. [Molecular characteristics of Clustered Regularly Interspaced Short Palindromic Repeat in Shigella].

    Science.gov (United States)

    Xue, Zerun; Wang, Yingfang; Duan, Guangcai; Yang, Haiyan; Xi, Yuanlin; Wang, Pengfei; Wang, Linlin; Guo, Xiangjiao

    2015-08-01

    To detect the molecular characteristics of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) in Shigella and to analyze the distribution of CRISPR related to the time of isolation. Of the 52 Shigella strains, 41 were isolated from Henan, 6 from Jiangxi and 5 isolated from Beijing. Both CRISPR locus of S1, S2, S3 and S4 in Shigella were detected by polymerase chain reaction (PCR). The PCR products were sequenced and compared. The positive rates of CRISPR locus in Shigella were 33.69% (S1), 50.00% (S2), 82.69% (S3) and 73.08% (S4), respectively. Two subtypes were discovered in S1 and S3 locus. Three subtypes were discovered in S2 locus. Four different subtypes were discovered in S4 locus. The isolates from Henan strains were divided into two groups by the time of isolation. Distributions of S1 were different, before or after 2004, on Shigella. S1 could not be detected after 2004. There were no statistical differences of S2, S3 and S4 in two groups. Different CRISPR subtypes or Shigella were discovered. A significant correlation was noticed between the CRISPR S1 related to the time of isolation but not between S2, S3 or S4 on the time of isolation.

  15. Lactobacillus buchneri genotyping on the basis of clustered regularly interspaced short palindromic repeat (CRISPR) locus diversity.

    Science.gov (United States)

    Briner, Alexandra E; Barrangou, Rodolphe

    2014-02-01

    Clustered regularly interspaced short palindromic repeats (CRISPR) in combination with associated sequences (cas) constitute the CRISPR-Cas immune system, which uptakes DNA from invasive genetic elements as novel "spacers" that provide a genetic record of immunization events. We investigated the potential of CRISPR-based genotyping of Lactobacillus buchneri, a species relevant for commercial silage, bioethanol, and vegetable fermentations. Upon investigating the occurrence and diversity of CRISPR-Cas systems in Lactobacillus buchneri genomes, we observed a ubiquitous occurrence of CRISPR arrays containing a 36-nucleotide (nt) type II-A CRISPR locus adjacent to four cas genes, including the universal cas1 and cas2 genes and the type II signature gene cas9. Comparative analysis of CRISPR spacer content in 26 L. buchneri pickle fermentation isolates associated with spoilage revealed 10 unique locus genotypes that contained between 9 and 29 variable spacers. We observed a set of conserved spacers at the ancestral end, reflecting a common origin, as well as leader-end polymorphisms, reflecting recent divergence. Some of these spacers showed perfect identity with phage sequences, and many spacers showed homology to Lactobacillus plasmid sequences. Following a comparative analysis of sequences immediately flanking protospacers that matched CRISPR spacers, we identified a novel putative protospacer-adjacent motif (PAM), 5'-AAAA-3'. Overall, these findings suggest that type II-A CRISPR-Cas systems are valuable for genotyping of L. buchneri.

  16. Time-Homogeneous Parabolic Wick-Anderson Model in One Space Dimension: Regularity of Solution

    OpenAIRE

    Kim, Hyun-Jung; Lototsky, Sergey V

    2017-01-01

    Even though the heat equation with random potential is a well-studied object, the particular case of time-independent Gaussian white noise in one space dimension has yet to receive the attention it deserves. The paper investigates the stochastic heat equation with space-only Gaussian white noise on a bounded interval. The main result is that the space-time regularity of the solution is the same for additive noise and for multiplicative noise in the Wick-It\\^o-Skorokhod interpretation.

  17. An L₁-regularized logistic model for detecting short-term neuronal interactions.

    Science.gov (United States)

    Zhao, Mengyuan; Batista, Aaron; Cunningham, John P; Chestek, Cynthia; Rivera-Alvidrez, Zuley; Kalmar, Rachel; Ryu, Stephen; Shenoy, Krishna; Iyengar, Satish

    2012-06-01

    Interactions among neurons are a key component of neural signal processing. Rich neural data sets potentially containing evidence of interactions can now be collected readily in the laboratory, but existing analysis methods are often not sufficiently sensitive and specific to reveal these interactions. Generalized linear models offer a platform for analyzing multi-electrode recordings of neuronal spike train data. Here we suggest an L(1)-regularized logistic regression model (L(1)L method) to detect short-term (order of 3 ms) neuronal interactions. We estimate the parameters in this model using a coordinate descent algorithm, and determine the optimal tuning parameter using a Bayesian Information Criterion. Simulation studies show that in general the L(1)L method has better sensitivities and specificities than those of the traditional shuffle-corrected cross-correlogram (covariogram) method. The L(1)L method is able to detect excitatory interactions with both high sensitivity and specificity with reasonably large recordings, even when the magnitude of the interactions is small; similar results hold for inhibition given sufficiently high baseline firing rates. Our study also suggests that the false positives can be further removed by thresholding, because their magnitudes are typically smaller than true interactions. Simulations also show that the L(1)L method is somewhat robust to partially observed networks. We apply the method to multi-electrode recordings collected in the monkey dorsal premotor cortex (PMd) while the animal prepares to make reaching arm movements. The results show that some neurons interact differently depending on task conditions. The stronger interactions detected with our L(1)L method were also visible using the covariogram method.

  18. Clustered, regularly interspaced short palindromic repeat (CRISPR) diversity and virulence factor distribution in avian Escherichia coli.

    Science.gov (United States)

    Fu, Qiang; Su, Zhixin; Cheng, Yuqiang; Wang, Zhaofei; Li, Shiyu; Wang, Heng'an; Sun, Jianhe; Yan, Yaxian

    In order to investigate the diverse characteristics of clustered, regularly interspaced short palindromic repeat (CRISPR) arrays and the distribution of virulence factor genes in avian Escherichia coli, 80 E. coli isolates obtained from chickens with avian pathogenic E. coli (APEC) or avian fecal commensal E. coli (AFEC) were identified. Using the multiplex polymerase chain reaction (PCR), five genes were subjected to phylogenetic typing and examined for CRISPR arrays to study genetic relatedness among the strains. The strains were further analyzed for CRISPR loci and virulence factor genes to determine a possible association between their CRISPR elements and their potential virulence. The strains were divided into five phylogenetic groups: A, B1, B2, D and E. It was confirmed that two types of CRISPR arrays, CRISPR1 and CRISPR2, which contain up to 246 distinct spacers, were amplified in most of the strains. Further classification of the isolates was achieved by sorting them into nine CRISPR clusters based on their spacer profiles, which indicates a candidate typing method for E. coli. Several significant differences in invasion-associated gene distribution were found between the APEC isolates and the AFEC isolates. Our results identified the distribution of 11 virulence genes and CRISPR diversity in 80 strains. It was demonstrated that, with the exception of iucD and aslA, there was no sharp demarcation in the gene distribution between the pathogenic (APEC) and commensal (AFEC) strains, while the total number of indicated CRISPR spacers may have a positive correlation with the potential pathogenicity of the E. coli isolates. Copyright © 2016. Published by Elsevier Masson SAS.

  19. Input Space Regularization Stabilizes Pre-images for Kernel PCA De-noising

    DEFF Research Database (Denmark)

    Abrahamsen, Trine Julie; Hansen, Lars Kai

    2009-01-01

    Solution of the pre-image problem is key to efficient nonlinear de-noising using kernel Principal Component Analysis. Pre-image estimation is inherently ill-posed for typical kernels used in applications and consequently the most widely used estimation schemes lack stability. For de-noising appli...... mapping is non-linear, however, by applying a simple input space distance regularizer we can reduce variability with very limited sacrifice in terms of de-noising efficiency....

  20. Salt-body Inversion with Minimum Gradient Support and Sobolev Space Norm Regularizations

    KAUST Repository

    Kazei, Vladimir

    2017-05-26

    Full-waveform inversion (FWI) is a technique which solves the ill-posed seismic inversion problem of fitting our model data to the measured ones from the field. FWI is capable of providing high-resolution estimates of the model, and of handling wave propagation of arbitrary complexity (visco-elastic, anisotropic); yet, it often fails to retrieve high-contrast geological structures, such as salt. One of the reasons for the FWI failure is that the updates at earlier iterations are too smooth to capture the sharp edges of the salt boundary. We compare several regularization approaches, which promote sharpness of the edges. Minimum gradient support (MGS) regularization focuses the inversion on blocky models, even more than the total variation (TV) does. However, both approaches try to invert undesirable high wavenumbers in the model too early for a model of complex structure. Therefore, we apply the Sobolev space norm as a regularizing term in order to maintain a balance between sharp and smooth updates in FWI. We demonstrate the application of these regularizations on a Marmousi model, enriched by a chunk of salt. The model turns out to be too complex in some parts to retrieve its full velocity distribution, yet the salt shape and contrast are retrieved.

  1. Space-Dependent Sobolev Gradients as a Regularization for Inverse Radiative Transfer Problems

    Directory of Open Access Journals (Sweden)

    Y. Favennec

    2016-01-01

    Full Text Available Diffuse optical tomography problems rely on the solution of an optimization problem for which the dimension of the parameter space is usually large. Thus, gradient-type optimizers are likely to be used, such as the Broyden-Fletcher-Goldfarb-Shanno (BFGS algorithm, along with the adjoint-state method to compute the cost function gradient. Usually, the L2-inner product is chosen within the extraction procedure (i.e., in the definition of the relationship between the cost function gradient and the directional derivative of the cost function while alternative inner products that act as regularization can be used. This paper presents some results based on space-dependent Sobolev inner products and shows that this method acts as an efficient low-pass filter on the cost function gradient. Numerical results indicate that the use of Sobolev gradients can be particularly attractive in the context of inverse problems, particularly because of the simplicity of this regularization, since a single additional diffusion equation is to be solved, and also because the quality of the solution is smoothly varying with respect to the regularization parameter.

  2. Critical phenomena of regular black holes in anti-de Sitter space-time

    Science.gov (United States)

    Fan, Zhong-Ying

    2017-04-01

    In General Relativity, addressing coupling to a non-linear electromagnetic field, together with a negative cosmological constant, we obtain the general static spherical symmetric black hole solution with magnetic charges, which is asymptotic to anti-de Sitter (AdS) space-times. In particular, for a degenerate case the solution becomes a Hayward-AdS black hole, which is regular everywhere in the full space-time. The existence of such a regular black hole solution preserves the weak energy condition, while the strong energy condition is violated. We then derive the first law and the Smarr formula of the black hole solution. We further discuss its thermodynamic properties and study the critical phenomena in the extended phase space where the cosmological constant is treated as a thermodynamic variable as well as the parameter associated with the non-linear electrodynamics. We obtain many interesting results such as: the Maxwell equal area law in the P{-}V (or S{-}T) diagram is violated and consequently the critical point (T_*,P_*) of the first order small-large black hole transition does not coincide with the inflection point (T_c,P_c) of the isotherms; the Clapeyron equation describing the coexistence curve of the Van der Waals (vdW) fluid is no longer valid; the heat capacity at constant pressure is finite at the critical point; the various exponents near the critical point are also different from those of the vdW fluid.

  3. On the regularity of mild solutions to complete higher order differential equations on Banach spaces

    Directory of Open Access Journals (Sweden)

    Nezam Iraniparast

    2015-09-01

    Full Text Available For the complete higher order differential equation u(n(t=Σk=0n-1Aku(k(t+f(t, t∈ R (* on a Banach space E, we give a new definition of mild solutions of (*. We then characterize the regular admissibility of a translation invariant subspace al M of BUC(R, E with respect to (* in terms of solvability of the operator equation Σj=0n-1AjXal Dj-Xal Dn = C. As application, almost periodicity of mild solutions of (* is proved.

  4. Results on n-tupled fixed points in complete asymptotically regular metric spaces

    Directory of Open Access Journals (Sweden)

    Anupam Sharma

    2014-10-01

    Full Text Available The notion of n-tupled fixed point is introduced by Imdad, Soliman, Choudhury and Das, Jour. of Operators, Vol. 2013, Article ID 532867. In this manuscript, we prove some n-tupled fixed point theorems (for even n for mappings having mixed monotone property in partially ordered complete asymptotically regular metric spaces. Our main theorem improves the corresponding results of Imdad, Sharma and Rao (M. Imdad, A. Sharma, K.P.R. Rao, Generalized n-tupled fixed point theorems for nonlinear contractions, preprint.

  5. Regular figures

    CERN Document Server

    Tóth, L Fejes; Ulam, S; Stark, M

    1964-01-01

    Regular Figures concerns the systematology and genetics of regular figures. The first part of the book deals with the classical theory of the regular figures. This topic includes description of plane ornaments, spherical arrangements, hyperbolic tessellations, polyhedral, and regular polytopes. The problem of geometry of the sphere and the two-dimensional hyperbolic space are considered. Classical theory is explained as describing all possible symmetrical groupings in different spaces of constant curvature. The second part deals with the genetics of the regular figures and the inequalities fo

  6. Regularity criterion for solutions to the Navier Stokes equations in the whole 3D space based on two vorticity components

    Czech Academy of Sciences Publication Activity Database

    Guo, Z.; Kučera, P.; Skalák, Zdeněk

    2018-01-01

    Roč. 458, č. 1 (2018), s. 755-766 ISSN 0022-247X R&D Projects: GA ČR GA13-00522S Institutional support: RVO:67985874 Keywords : Navier Stokes equations * conditional regularity * regularity criteria * vorticity * Besov spaces * bony decomposition Subject RIV: BA - General Mathematics Impact factor: 1.064, year: 2016

  7. Critical phenomena of regular black holes in anti-de Sitter space-time

    Energy Technology Data Exchange (ETDEWEB)

    Fan, Zhong-Ying [Peking University, Center for High Energy Physics, Beijing (China)

    2017-04-15

    In General Relativity, addressing coupling to a non-linear electromagnetic field, together with a negative cosmological constant, we obtain the general static spherical symmetric black hole solution with magnetic charges, which is asymptotic to anti-de Sitter (AdS) space-times. In particular, for a degenerate case the solution becomes a Hayward-AdS black hole, which is regular everywhere in the full space-time. The existence of such a regular black hole solution preserves the weak energy condition, while the strong energy condition is violated. We then derive the first law and the Smarr formula of the black hole solution. We further discuss its thermodynamic properties and study the critical phenomena in the extended phase space where the cosmological constant is treated as a thermodynamic variable as well as the parameter associated with the non-linear electrodynamics. We obtain many interesting results such as: the Maxwell equal area law in the P-V (or S-T) diagram is violated and consequently the critical point (T{sub *},P{sub *}) of the first order small-large black hole transition does not coincide with the inflection point (T{sub c},P{sub c}) of the isotherms; the Clapeyron equation describing the coexistence curve of the Van der Waals (vdW) fluid is no longer valid; the heat capacity at constant pressure is finite at the critical point; the various exponents near the critical point are also different from those of the vdW fluid. (orig.)

  8. Non-parametric graphnet-regularized representation of dMRI in space and time.

    Science.gov (United States)

    Fick, Rutger H J; Petiet, Alexandra; Santin, Mathieu; Philippe, Anne-Charlotte; Lehericy, Stephane; Deriche, Rachid; Wassermann, Demian

    2018-01-01

    Effective representation of the four-dimensional diffusion MRI signal - varying over three-dimensional q-space and diffusion time τ - is a sought-after and still unsolved challenge in diffusion MRI (dMRI). We propose a functional basis approach that is specifically designed to represent the dMRI signal in this qτ-space. Following recent terminology, we refer to our qτ-functional basis as "qτ-dMRI". qτ-dMRI can be seen as a time-dependent realization of q-space imaging by Paul Callaghan and colleagues. We use GraphNet regularization - imposing both signal smoothness and sparsity - to drastically reduce the number of diffusion-weighted images (DWIs) that is needed to represent the dMRI signal in the qτ-space. As the main contribution, qτ-dMRI provides the framework to - without making biophysical assumptions - represent the qτ-space signal and estimate time-dependent q-space indices (qτ-indices), providing a new means for studying diffusion in nervous tissue. We validate our method on both in-silico generated data using Monte-Carlo simulations and an in-vivo test-retest study of two C57Bl6 wild-type mice, where we found good reproducibility of estimated qτ-index values and trends. In the hopes of opening up new τ-dependent venues of studying nervous tissues, qτ-dMRI is the first of its kind in being specifically designed to provide open interpretation of the qτ-diffusion signal. Copyright © 2017 Elsevier B.V. All rights reserved.

  9. Short-term regular aerobic exercise reduces oxidative stress produced by acute in the adipose microvasculature.

    Science.gov (United States)

    Robinson, Austin T; Fancher, Ibra S; Sudhahar, Varadarajan; Bian, Jing Tan; Cook, Marc D; Mahmoud, Abeer M; Ali, Mohamed M; Ushio-Fukai, Masuko; Brown, Michael D; Fukai, Tohru; Phillips, Shane A

    2017-05-01

    High blood pressure has been shown to elicit impaired dilation in the vasculature. The purpose of this investigation was to elucidate the mechanisms through which high pressure may elicit vascular dysfunction and determine the mechanisms through which regular aerobic exercise protects arteries against high pressure. Male C57BL/6J mice were subjected to 2 wk of voluntary running (~6 km/day) for comparison with sedentary controls. Hindlimb adipose resistance arteries were dissected from mice for measurements of flow-induced dilation (FID; with or without high intraluminal pressure exposure) or protein expression of NADPH oxidase II (NOX II) and superoxide dismutase (SOD). Microvascular endothelial cells were subjected to high physiological laminar shear stress (20 dyn/cm2) or static condition and treated with ANG II + pharmacological inhibitors. Cells were analyzed for the detection of ROS or collected for Western blot determination of NOX II and SOD. Resistance arteries from exercised mice demonstrated preserved FID after high pressure exposure, whereas FID was impaired in control mouse arteries. Inhibition of ANG II or NOX II restored impaired FID in control mouse arteries. High pressure increased superoxide levels in control mouse arteries but not in exercise mouse arteries, which exhibited greater ability to convert superoxide to H2O2 Arteries from exercised mice exhibited less NOX II protein expression, more SOD isoform expression, and less sensitivity to ANG II. Endothelial cells subjected to laminar shear stress exhibited less NOX II subunit expression. In conclusion, aerobic exercise prevents high pressure-induced vascular dysfunction through an improved redox environment in the adipose microvasculature.NEW & NOTEWORTHY We describe potential mechanisms contributing to aerobic exercise-conferred protection against high intravascular pressure. Subcutaneous adipose microvessels from exercise mice express less NADPH oxidase (NOX) II and more superoxide dismutase

  10. Finite Element Analysis of Bone Stress in the Posterior Mandible Using Regular and Short Implants, in the Same Context, with Splinted and Nonsplinted Prostheses.

    Science.gov (United States)

    Toniollo, Marcelo Bighetti; Macedo, Ana Paula; Pupim, Denise; Zaparolli, Danilo; da Gloria Chiarello de Mattos, Maria

    The aim of this study was to compare the bone stress generated by rehabilitation using regular and short-length Morse taper implants (11 and 5 mm, respectively) in the same context and allied with splinted (SP) and nonsplinted (NSP) prostheses in the posterior area of the mandible using finite element analysis. Three-dimensional geometric models using regular implants (Ø4 × 11 mm) and short implants (Ø4 × 5 mm) were simulated with a left posterior mandible that had the first premolar tooth and all teeth posterior to that premolar removed. The four experimental groups were as follows: Group 1 NSP (two regular implants and one short implant rehabilitated with nonsplinted prostheses), Group 1 SP (two regular implants and one short implant rehabilitated with splinted prostheses), Group 2 NSP (one regular implant and two short implants rehabilitated with nonsplinted prostheses), and Group 2 SP (one regular implant and two short implants rehabilitated with splinted prostheses). Oblique forces were simulated in molars (365 N) and premolars (200 N). Qualitative and quantitative analyses of the minimum principal stress in bone were performed using the ANSYS Workbench software, version 10.0. The splinted prostheses decreased the stress to the surrounding bone of short implants. Moreover, they also decreased the stress on the surrounding bone adjacent to the tooth. However, the splinted prostheses generated higher stress in the coverage of the surrounding bone for regular intermediate implants and prominently in the bone at the implant cervical region, at the edge crest, compared with the individualized groups. The benefits in the use of splinted prostheses are notable for the preservation of the bone surrounding the short implants and tooth; however, it is necessary to evaluate each clinical situation because, in this context, the regular implants are at higher stress than the individualized implants.

  11. RBSURFpred: Modeling protein accessible surface area in real and binary space using regularized and optimized regression.

    Science.gov (United States)

    Tarafder, Sumit; Toukir Ahmed, Md; Iqbal, Sumaiya; Tamjidul Hoque, Md; Sohel Rahman, M

    2018-01-02

    Accessible surface area (ASA) of a protein residue is an effective feature for protein structure prediction, binding region identification, fold recognition problems etc. Improving the prediction of ASA by the application of effective feature variables is a challenging but explorable task to consider, specially in the field of machine learning. Among the existing predictors of ASA, REGAd3p is a highly accurate ASA predictor which is based on regularized exact regression with polynomial kernel of degree 3. In this work, we present a new predictor RBSURFpred, which extends REGAd3p on several dimensions by incorporating 58 physicochemical, evolutionary and structural properties into 9-tuple peptides via Chou's general PseAAC, which allowed us to obtain higher accuracies in predicting both real-valued and binary ASA. We have compared RBSURFpred for both real and binary space predictions with state-of-the-art predictors, such as REGAd3p and SPIDER2. We also have carried out a rigorous analysis of the performance of RBSURFpred in terms of different amino acids and their properties, and also with biologically relevant case-studies. The performance of RBSURFpred establishes itself as a useful tool for the community. Copyright © 2018 Elsevier Ltd. All rights reserved.

  12. A Unified Semi-Supervised Community Detection Framework Using Latent Space Graph Regularization.

    Science.gov (United States)

    Yang, Liang; Cao, Xiaochun; Jin, Di; Wang, Xiao; Meng, Dan

    2015-11-01

    Community structure is one of the most important properties of complex networks and is a foundational concept in exploring and understanding networks. In real world, topology information alone is often inadequate to accurately find community structure due to its sparsity and noises. However, potential useful prior information can be obtained from domain knowledge in many applications. Thus, how to improve the community detection performance by combining network topology with prior information becomes an interesting and challenging problem. Previous efforts on utilizing such priors are either dedicated or insufficient. In this paper, we firstly present a unified interpretation to a group of existing community detection methods. And then based on this interpretation, we propose a unified semi-supervised framework to integrate network topology with prior information for community detection. If the prior information indicates that some nodes belong to the same community, we encode it by adding a graph regularization term to penalize the latent space dissimilarity of these nodes. This framework can be applied to many widely-used matrix-based community detection methods satisfying our interpretation, such as nonnegative matrix factorization, spectral clustering, and their variants. Extensive experiments on both synthetic and real networks show that the proposed framework significantly improves the accuracy of community detection, especially on networks with unclear structures.

  13. Recent progress in technological improvement and biomedical applications of the clustered regularly interspaced short palindromic repeats/cas system

    Directory of Open Access Journals (Sweden)

    Yanlan Li

    2017-01-01

    Full Text Available The adaptive immune systems of clustered regularly interspaced short palindromic repeats (CRISPR and CRISPR-associated genes (Cas selectively destroy nonnative DNA and defend almost all archaea and about half of the bacteria against infections. In the past years, the system has been genetically engineered to a powerful genome editing tool for a wide variety of organisms. Recently, many progresses have been made in the CRISPR-Cas systems. These improvements include applications in editing multiple genes, correcting mutation genes with one base difference, targeting nondividing cells, reducing off-target, and editing RNAs. The biomedical applications of the technology are to edit not only cells but also embryos in clinical settings. In this review, we briefly introduce the improvements of CRISPR-Cas9 gene editing methods and summarize the recent advances of this technology.

  14. Clustered regularly interspaced short palindromic repeats (CRISPRs): the hallmark of an ingenious antiviral defense mechanism in prokaryotes.

    Science.gov (United States)

    Al-Attar, Sinan; Westra, Edze R; van der Oost, John; Brouns, Stan J J

    2011-04-01

    Many prokaryotes contain the recently discovered defense system against mobile genetic elements. This defense system contains a unique type of repetitive DNA stretches, termed Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs). CRISPRs consist of identical repeated DNA sequences (repeats), interspaced by highly variable sequences referred to as spacers. The spacers originate from either phages or plasmids and comprise the prokaryotes' 'immunological memory'. CRISPR-associated (cas) genes encode conserved proteins that together with CRISPRs make-up the CRISPR/Cas system, responsible for defending the prokaryotic cell against invaders. CRISPR-mediated resistance has been proposed to involve three stages: (i) CRISPR-Adaptation, the invader DNA is encountered by the CRISPR/Cas machinery and an invader-derived short DNA fragment is incorporated in the CRISPR array. (ii) CRISPR-Expression, the CRISPR array is transcribed and the transcript is processed by Cas proteins. (iii) CRISPR-Interference, the invaders' nucleic acid is recognized by complementarity to the crRNA and neutralized. An application of the CRISPR/Cas system is the immunization of industry-relevant prokaryotes (or eukaryotes) against mobile-genetic invasion. In addition, the high variability of the CRISPR spacer content can be exploited for phylogenetic and evolutionary studies. Despite impressive progress during the last couple of years, the elucidation of several fundamental details will be a major challenge in future research.

  15. REGULARITY PROPERTIES AND PATHOLOGIES OF POSITION-SPACE RENORMALIZATION-GROUP TRANSFORMATIONS - SCOPE AND LIMITATIONS OF GIBBSIAN THEORY

    NARCIS (Netherlands)

    VANENTER, ACD; FERNANDEZ, R; SOKAL, AD

    We reconsider the conceptual foundations of the renormalization-group (RG) formalism, and prove some rigorous theorems on the regularity properties and possible pathologies of the RG map. Our main results apply to local (in position space) RG maps acting on systems of bounded spins (compact

  16. Myotube differentiation in clustered regularly interspaced short palindromic repeat/Cas9-mediated MyoD knockout quail myoblast cells

    Directory of Open Access Journals (Sweden)

    Si Won Kim

    2017-07-01

    Full Text Available Objective In the livestock industry, the regulatory mechanisms of muscle proliferation and differentiation can be applied to improve traits such as growth and meat production. We investigated the regulatory pathway of MyoD and its role in muscle differentiation in quail myoblast cells. Methods The MyoD gene was mutated by the clustered regularly interspaced short palindromic repeat (CRISPR/Cas9 technology and single cell-derived MyoD mutant sublines were identified to investigate the global regulatory mechanism responsible for muscle differentiation. Results The mutation efficiency was 73.3% in the mixed population, and from this population we were able to establish two QM7 MyoD knockout subline (MyoD KO QM7#4 through single cell pick-up and expansion. In the undifferentiated condition, paired box 7 expression in MyoD KO QM7#4 cells was not significantly different from regular QM7 (rQM7 cells. During differentiation, however, myotube formation was dramatically repressed in MyoD KO QM7#4 cells. Moreover, myogenic differentiation-specific transcripts and proteins were not expressed in MyoD KO QM7#4 cells even after an extended differentiation period. These results indicate that MyoD is critical for muscle differentiation. Furthermore, we analyzed the global regulatory interactions by RNA sequencing during muscle differentiation. Conclusion With CRISPR/Cas9-mediated genomic editing, single cell-derived sublines with a specific knockout gene can be adapted to various aspects of basic research as well as in functional genomics studies.

  17. [Comparative analysis of clustered regularly interspaced short palindromic repeats (CRISPRs) loci in the genomes of halophilic archaea].

    Science.gov (United States)

    Zhang, Fan; Zhang, Bing; Xiang, Hua; Hu, Songnian

    2009-11-01

    Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) is a widespread system that provides acquired resistance against phages in bacteria and archaea. Here we aim to genome-widely analyze the CRISPR in extreme halophilic archaea, of which the whole genome sequences are available at present time. We used bioinformatics methods including alignment, conservation analysis, GC content and RNA structure prediction to analyze the CRISPR structures of 7 haloarchaeal genomes. We identified the CRISPR structures in 5 halophilic archaea and revealed a conserved palindromic motif in the flanking regions of these CRISPR structures. In addition, we found that the repeat sequences of large CRISPR structures in halophilic archaea were greatly conserved, and two types of predicted RNA secondary structures derived from the repeat sequences were likely determined by the fourth base of the repeat sequence. Our results support the proposal that the leader sequence may function as recognition site by having palindromic structures in flanking regions, and the stem-loop secondary structure formed by repeat sequences may function in mediating the interaction between foreign genetic elements and CAS-encoded proteins.

  18. Clustered Regularly Interspaced Short Palindromic Repeats Are emm Type-Specific in Highly Prevalent Group A Streptococci.

    Directory of Open Access Journals (Sweden)

    Po-Xing Zheng

    Full Text Available Clustered regularly interspaced short palindromic repeats (CRISPR are the bacterial adaptive immune system against foreign nucleic acids. Given the variable nature of CRISPR, it could be a good marker for molecular epidemiology. Group A streptococcus is one of the major human pathogens. It has two CRISPR loci, including CRISPR01 and CRISPR02. The aim of this study was to analyze the distribution of CRISPR-associated gene cassettes (cas and CRISPR arrays in highly prevalent emm types. The cas cassette and CRISPR array in two CRISPR loci were analyzed in a total of 332 strains, including emm1, emm3, emm4, emm12, and emm28 strains. The CRISPR type was defined by the spacer content of each CRISPR array. All strains had at least one cas cassette or CRISPR array. More than 90% of the spacers were found in one emm type, specifically. Comparing the consistency between emm and CRISPR types by Simpson's index of diversity and the adjusted Wallace coefficient, CRISPR01 type was concordant to emm type, and CRISPR02 showed unidirectional congruence to emm type, suggesting that at least for the majority of isolates causing infection in high income countries, the emm type can be inferred from CRISPR analysis, which can further discriminate isolates sharing the same emm type.

  19. Molecular identification and characterization of clustered regularly interspaced short palindromic repeat (CRISPR) gene cluster in Taylorella equigenitalis.

    Science.gov (United States)

    Hara, Yasushi; Hayashi, Kyohei; Nakajima, Takuya; Kagawa, Shizuko; Tazumi, Akihiro; Moore, John E; Matsuda, Motoo

    2013-09-01

    Clustered regularly interspaced short palindromic repeats (CRISPRs), of approximately 10,000 base pairs (bp) in length, were shown to occur in the Japanese Taylorella equigenitalis strain, EQ59. The locus was composed of the putative CRISPRs-associated with 5 (cas5), RAMP csd1, csd2, recB, cas1, a leader region, 13 CRISPR consensus sequence repeats (each 32 bp; 5'-TCAGCCACGTTCGCGTGGCTGTGTGTTTAAAG-3'). These were in turn separated by 12 non repetitive unique spacer regions of similar length. In addition, a leader region, a transposase/IS protein, a leader region, and cas3 were also seen. All seven putative open reading frames carry their ribosome binding sites. Promoter consensus sequences at the -35 and -10 regions and putative intrinsic ρ-independent transcription terminator regions also occurred. A possible long overlap of 170 bp in length occurred between the recB and cas1 loci. Positive reverse transcription PCR signals of cas5, RAMP csd1, csd2-recB/cas1, and cas3 were generated. A putative secondary structure of the CRISPR consensus repeats was constructed. Following this, CRISPR results of the T. equigenitalis EQ59 isolate were subsequently compared with those from the Taylorella asinigenitalis MCE3 isolate.

  20. Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) RNAs in the Porphyromonas gingivalis CRISPR-Cas I-C System.

    Science.gov (United States)

    Burmistrz, Michal; Rodriguez Martinez, Jose Ignacio; Krochmal, Daniel; Staniec, Dominika; Pyrc, Krzysztof

    2017-12-01

    The CRISPR-Cas (clustered regularly interspaced short palindromic repeat-CRISPR-associated protein) system is unique to prokaryotes and provides the majority of bacteria and archaea with immunity against nucleic acids of foreign origin. CRISPR RNAs (crRNAs) are the key element of this system, since they are responsible for its selectivity and effectiveness. Typical crRNAs consist of a spacer sequence flanked with 5' and 3' handles originating from repeat sequences that are important for recognition of these small RNAs by the Cas machinery. In this investigation, we studied the type I-C CRISPR-Cas system in Porphyromonas gingivalis , a human pathogen associated with periodontitis, rheumatoid arthritis, cardiovascular disease, and aspiration pneumonia. We demonstrated the importance of the 5' handle for crRNA recognition by the effector complex and consequently activity, as well as secondary trimming of the 3' handle, which was not affected by modifications of the repeat sequence. IMPORTANCE Porphyromonas gingivalis , a clinically relevant Gram-negative, anaerobic bacterium, is one of the major etiologic agents of periodontitis and has been linked with the development of other clinical conditions, including rheumatoid arthritis, cardiovascular disease, and aspiration pneumonia. The presented results on the biogenesis and functions of crRNAs expand our understanding of CRISPR-Cas cellular defenses in P. gingivalis and of horizontal gene transfer in bacteria. Copyright © 2017 American Society for Microbiology.

  1. Gene Repression in Haloarchaea Using the CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)-Cas I-B System*

    Science.gov (United States)

    Stachler, Aris-Edda; Marchfelder, Anita

    2016-01-01

    The clustered regularly interspaced short palindromic repeats (CRISPR)-Cas system is used by bacteria and archaea to fend off foreign genetic elements. Since its discovery it has been developed into numerous applications like genome editing and regulation of transcription in eukaryotes and bacteria. For archaea currently no tools for transcriptional repression exist. Because molecular biology analyses in archaea become more and more widespread such a tool is vital for investigating the biological function of essential genes in archaea. Here we use the model archaeon Haloferax volcanii to demonstrate that its endogenous CRISPR-Cas system I-B can be harnessed to repress gene expression in archaea. Deletion of cas3 and cas6b genes results in efficient repression of transcription. crRNAs targeting the promoter region reduced transcript levels down to 8%. crRNAs targeting the reading frame have only slight impact on transcription. crRNAs that target the coding strand repress expression only down to 88%, whereas crRNAs targeting the template strand repress expression down to 8%. Repression of an essential gene results in reduction of transcription levels down to 22%. Targeting efficiencies can be enhanced by expressing a catalytically inactive Cas3 mutant. Genes can be targeted on plasmids or on the chromosome, they can be monocistronic or part of a polycistronic operon. PMID:27226589

  2. Diversity, evolution, and functionality of clustered regularly interspaced short palindromic repeat (CRISPR) regions in the fire blight pathogen Erwinia amylovora.

    Science.gov (United States)

    Rezzonico, Fabio; Smits, Theo H M; Duffy, Brion

    2011-06-01

    The clustered regularly interspaced short palindromic repeat (CRISPR)/Cas system confers acquired heritable immunity against mobile nucleic acid elements in prokaryotes, limiting phage infection and horizontal gene transfer of plasmids. In CRISPR arrays, characteristic repeats are interspersed with similarly sized nonrepetitive spacers derived from transmissible genetic elements and acquired when the cell is challenged with foreign DNA. New spacers are added sequentially and the number and type of CRISPR units can differ among strains, providing a record of phage/plasmid exposure within a species and giving a valuable typing tool. The aim of this work was to investigate CRISPR diversity in the highly homogeneous species Erwinia amylovora, the causal agent of fire blight. A total of 18 CRISPR genotypes were defined within a collection of 37 cosmopolitan strains. Strains from Spiraeoideae plants clustered in three major groups: groups II and III were composed exclusively of bacteria originating from the United States, whereas group I generally contained strains of more recent dissemination obtained in Europe, New Zealand, and the Middle East. Strains from Rosoideae and Indian hawthorn (Rhaphiolepis indica) clustered separately and displayed a higher intrinsic diversity than that of isolates from Spiraeoideae plants. Reciprocal exclusion was generally observed between plasmid content and cognate spacer sequences, supporting the role of the CRISPR/Cas system in protecting against foreign DNA elements. However, in several group III strains, retention of plasmid pEU30 is inconsistent with a functional CRISPR/Cas system.

  3. Double-stranded endonuclease activity in Bacillus halodurans clustered regularly interspaced short palindromic repeats (CRISPR)-associated Cas2 protein.

    Science.gov (United States)

    Nam, Ki Hyun; Ding, Fran; Haitjema, Charles; Huang, Qingqiu; DeLisa, Matthew P; Ke, Ailong

    2012-10-19

    The CRISPR (clustered regularly interspaced short palindromic repeats) system is a prokaryotic RNA-based adaptive immune system against extrachromosomal genetic elements. Cas2 is a universally conserved core CRISPR-associated protein required for the acquisition of new spacers for CRISPR adaptation. It was previously characterized as an endoribonuclease with preference for single-stranded (ss)RNA. Here, we show using crystallography, mutagenesis, and isothermal titration calorimetry that the Bacillus halodurans Cas2 (Bha_Cas2) from the subtype I-C/Dvulg CRISPR instead possesses metal-dependent endonuclease activity against double-stranded (ds)DNA. This activity is consistent with its putative function in producing new spacers for insertion into the 5'-end of the CRISPR locus. Mutagenesis and isothermal titration calorimetry studies revealed that a single divalent metal ion (Mg(2+) or Mn(2+)), coordinated by a symmetric Asp pair in the Bha_Cas2 dimer, is involved in the catalysis. We envision that a pH-dependent conformational change switches Cas2 into a metal-binding competent conformation for catalysis. We further propose that the distinct substrate preferences among Cas2 proteins may be determined by the sequence and structure in the β1-α1 loop.

  4. Gene Repression in Haloarchaea Using the CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats)-Cas I-B System.

    Science.gov (United States)

    Stachler, Aris-Edda; Marchfelder, Anita

    2016-07-15

    The clustered regularly interspaced short palindromic repeats (CRISPR)-Cas system is used by bacteria and archaea to fend off foreign genetic elements. Since its discovery it has been developed into numerous applications like genome editing and regulation of transcription in eukaryotes and bacteria. For archaea currently no tools for transcriptional repression exist. Because molecular biology analyses in archaea become more and more widespread such a tool is vital for investigating the biological function of essential genes in archaea. Here we use the model archaeon Haloferax volcanii to demonstrate that its endogenous CRISPR-Cas system I-B can be harnessed to repress gene expression in archaea. Deletion of cas3 and cas6b genes results in efficient repression of transcription. crRNAs targeting the promoter region reduced transcript levels down to 8%. crRNAs targeting the reading frame have only slight impact on transcription. crRNAs that target the coding strand repress expression only down to 88%, whereas crRNAs targeting the template strand repress expression down to 8%. Repression of an essential gene results in reduction of transcription levels down to 22%. Targeting efficiencies can be enhanced by expressing a catalytically inactive Cas3 mutant. Genes can be targeted on plasmids or on the chromosome, they can be monocistronic or part of a polycistronic operon. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

  5. Clustered Regularly Interspaced Short Palindromic Repeats Are emm Type-Specific in Highly Prevalent Group A Streptococci.

    Science.gov (United States)

    Zheng, Po-Xing; Chan, Yuen-Chi; Chiou, Chien-Shun; Chiang-Ni, Chuan; Wang, Shu-Ying; Tsai, Pei-Jane; Chuang, Woei-Jer; Lin, Yee-Shin; Liu, Ching-Chuan; Wu, Jiunn-Jong

    2015-01-01

    Clustered regularly interspaced short palindromic repeats (CRISPR) are the bacterial adaptive immune system against foreign nucleic acids. Given the variable nature of CRISPR, it could be a good marker for molecular epidemiology. Group A streptococcus is one of the major human pathogens. It has two CRISPR loci, including CRISPR01 and CRISPR02. The aim of this study was to analyze the distribution of CRISPR-associated gene cassettes (cas) and CRISPR arrays in highly prevalent emm types. The cas cassette and CRISPR array in two CRISPR loci were analyzed in a total of 332 strains, including emm1, emm3, emm4, emm12, and emm28 strains. The CRISPR type was defined by the spacer content of each CRISPR array. All strains had at least one cas cassette or CRISPR array. More than 90% of the spacers were found in one emm type, specifically. Comparing the consistency between emm and CRISPR types by Simpson's index of diversity and the adjusted Wallace coefficient, CRISPR01 type was concordant to emm type, and CRISPR02 showed unidirectional congruence to emm type, suggesting that at least for the majority of isolates causing infection in high income countries, the emm type can be inferred from CRISPR analysis, which can further discriminate isolates sharing the same emm type.

  6. Development of a novel molecular detection method for clustered regularly interspaced short palindromic repeats (CRISPRs) in Taylorella organisms.

    Science.gov (United States)

    Hara, Yasushi; Nakajima, Takuya; Akamatsu, Marie; Yahiro, Motoki; Kagawa, Shizuko; Petry, Sandrine; Matsuda, Motoo; Moore, John E

    2015-07-01

    Contagious equine metritis is a bacterial infectious disease of horses caused by Taylorella equigenitalis, a Gram-negative eubacterium. The disease has been described in several continents, including Europe, North America and Asia. A novel molecular method was developed to detect clustered regularly interspaced short palindromic repeats (CRISPRs), which were separated by non-repetitive unique spacer regions (NRUSRs) of similar length, in the Taylorella equigenitalis EQ59 strain using a primer pair, f-/r-TeCRISPR-ladder, by PCR amplification. In total, 31 Taylorella isolates (17 T. equigenitalis and 14 Taylorella asinigenitalis) were examined. The T. equigenitalis isolates came from thoroughbred and cold-blooded horses from nine countries during 1980-1996, whilst the T. asinigenitalis isolates all originated from donkey jacks in France and the USA during 1997-2006. PAGE fractionated all of the 13 CRISPRs separated by 12 NRUSRs in T. equigenitalis EQ59. Permutation examples of CRISPRs, which were separated by NRUSRs for small-sized ladders, consisting of two doublet bands were shown. Putative CRISPRs separated by NRUSRs were amplified with 14/17 (82.4 %) geographically disparate T. equigenitalis isolates using the newly designed primer pair. Approximately 82.4 % of the T. equigenitalis isolates had CRISPRs separated by NRUSRs. The CRISPR locus was also found in the French T. asinigenitalis strain MCE3. Putative CRISPRs separated by NRUSRs were detected similarly in 4/14 (28.6 %) T. asinigenitalis isolates. Overall, a more detailed understanding of the molecular biology of CRISPRs within Taylorella organisms may help elucidate the pathogenic virulence and transmission mechanisms associated with this important equine pathogen.

  7. Characterization of the clustered regularly interspaced short palindromic repeats sites in Streptococcus mutans isolated from early childhood caries patients.

    Science.gov (United States)

    Chen, Jing; Li, Tiancheng; Zhou, Xuedong; Cheng, Lei; Huo, Yuanyuan; Zou, Jing; Li, Yuqing

    2017-11-01

    The aim of this study was to analyze the characteristics of the clustered regularly interspaced short palindromic repeats (CRISPR) sites in 45 clinical Streptococcus mutans strains and their relationship to the clinical manifestations of early childhood caries (ECC). Forty-five S. mutans strains were isolated from the plaque samples taken from sixty-three children. CRISPR sites were sequenced and BLAST was used to compare these sites to those in the CRISPRTarget database. The association between the distribution of CRISPR sites and the manifestation of caries was analyzed by Chi-Square test. Further, biofilm formation (by crystal violet staining) and the synthesis of polysaccharide (by anthrone-sulfuric method) of all clinical isolated S. mutans strains with both CRISPR sites and no CRISPR site were comapared. Finally, acidogenicity and acidurity of two typical strains were determined using pH drop and acid tolerance assays. Biofilm formation and EPS synthesis by two typical strains were compared by 3D CLSM (Confocal Laser Scanning Microscope) assays and the expression of gtf genes were evaluated using qPCR. We found that most of the spacers in the clinical S. mutans strains were derived from Streptococcus phages APCM01 and M102. The number of CRISPR sites in these strains was associated with the clinical manifestations of ECC. Moreover, we found that the biofilm formation and EPS synthesis ability of the S. mutans strains with both CRISPR sites was significant improved. An association was found between the distribution of CRISPR sites and the clinical manifestations of caries. The CRISPR sites might contribute to the cariogenic potential of S. mutans. Copyright © 2017 Elsevier Ltd. All rights reserved.

  8. Dynamics of the Space Tug System with a Short Tether

    Directory of Open Access Journals (Sweden)

    Jiafu Liu

    2015-01-01

    Full Text Available The dynamics of the space tug system with a short tether similar to the ROGER system during deorbiting is presented. The kinematical characteristic of this system is significantly different from the traditional tethered system as the tether is tensional and tensionless alternately during the deorbiting process. The dynamics obtained based on the methods for the traditional tethered system is not suitable for the space tug system. Therefore, a novel method for deriving dynamics for the deorbiting system similar to the ROGER system is proposed by adopting the orbital coordinates of the two spacecraft and the Euler angles of ROGER spacecraft as the generalized coordinates instead of in- and out-plane librations and the length of the tether and so forth. Then, the librations of the system are equivalently obtained using the orbital positions of the two spacecraft. At last, the geostationary orbit (GEO and the orbit whose apogee is 300 km above GEO are chosen as the initial and target orbits, respectively, to perform the numerical simulations. The simulation results indicate that the dynamics can describe the characteristic of the tether-net system conveniently and accurately, and the deorbiting results are deeply affected by the initial conditions and parameters.

  9. Vitamin D endocrine system after short-term space flight

    Science.gov (United States)

    Rhoten, William B. (Principal Investigator); Sergeev, Igor N. (Principal Investigator)

    1996-01-01

    The exposure of the body to microgravity during space flight causes a series of well-documented changes in Ca(2+) metabolism, yet the cellular/molecular mechanisms leading to these changes are poorly understood. There is some evidence for microgravity-induced alterations in the vitamin D endocrine system, which is known to be primarily involved in the regulation of Ca(2+) metabolism. Vitamin D-dependent Ca(2+) binding proteins, or calbindins, are believed to have a significant role in maintaining cellular Ca(2+) homeostasis. We used immunocytochemical, biochemical and molecular approaches to analyze the expression of calbindin-D(sub 28k) and calbindin-D(sub 9k) in kidneys and intestines of rats flown for 9 days aboard the Spacelab 3 mission. The effects of microgravity on calbindins in rats in space vs. 'grounded' animals (synchronous Animal Enclosure Module controls and tail suspension controls) were compared. Exposure to microgravity resulted in a significant decrease in calbindin-D(sub 28k) content in kidneys and calbindin-D(sub 9k) in the intestine of flight and suspended animals, as measured by enzyme-linked immunosorbent assay (ELISA). Immunocytochemistry (ICC) in combination with quantitative computer image analysis was used to measure in situ the expression of calbindins in kidneys and intestine, and insulin in pancreas. There was a large decrease in the distal tubular cell-associated calbindin-D(sub 28k) and absorptive cell-associated calbindin-D(sub 9k) immunoreactivity in the space and suspension kidneys and intestine, as compared with matched ground controls. No consistent differences in pancreatic insulin immunoreactivity between space, suspension and ground controls was observed. There were significant correlations between results by quantitative ICC and ELISA. Western blot analysis showed no consistent changes in the low levels of intestinal and renal vitamin D receptors. These findings suggest that a decreased expression of calbindins after a short

  10. Maximal regularity in lp spaces for discrete time fractional shifted equations

    Science.gov (United States)

    Lizama, Carlos; Murillo-Arcila, Marina

    2017-09-01

    In this paper, we are presenting a new method based on operator-valued Fourier multipliers to characterize the existence and uniqueness of ℓp-solutions for discrete time fractional models in the form where A is a closed linear operator defined on a Banach space X and Δα denotes the Grünwald-Letnikov fractional derivative of order α > 0. If X is a UMD space, we provide this characterization only in terms of the R-boundedness of the operator-valued symbol associated to the abstract model. To illustrate our results, we derive new qualitative properties of nonlinear difference equations with shiftings, including fractional versions of the logistic and Nagumo equations.

  11. Semi-inner-products in Banach Spaces with Applications to Regularized Learning, Sampling, and Sparse Approximation

    Science.gov (United States)

    2016-03-13

    data sources, gathering and maintaining the data needed, and completing and reviewing the collection of information. Send comments regarding this...2012). 28-AUG-12, Paris, France. : , Roman Ilin, Jun Zhang. Information fusion with uncertainty modeld on topological event spaces, Symposium on...on   apriori  given  kernel  function,  but  a  satisfactory   application  of  theory  to  derive  s.i.p  reproducing

  12. A Three-Dimensional Finite Element Analysis of the Stress Distribution Generated by Splinted and Nonsplinted Prostheses in the Rehabilitation of Various Bony Ridges with Regular or Short Morse Taper Implants.

    Science.gov (United States)

    Toniollo, Marcelo Bighetti; Macedo, Ana Paula; Rodrigues, Renata Cristina; Ribeiro, Ricardo Faria; de Mattos, Maria G

    The aim of this study was to compare the biomechanical performance of splinted or nonsplinted prostheses over short- or regular-length Morse taper implants (5 mm and 11 mm, respectively) in the posterior area of the mandible using finite element analysis. Three-dimensional geometric models of regular implants (Ø 4 × 11 mm) and short implants (Ø 4 × 5 mm) were placed into a simulated model of the left posterior mandible that included the first premolar tooth; all teeth posterior to this tooth had been removed. The four experimental groups were as follows: regular group SP (three regular implants were rehabilitated with splinted prostheses), regular group NSP (three regular implants were rehabilitated with nonsplinted prostheses), short group SP (three short implants were rehabilitated with splinted prostheses), and short group NSP (three short implants were rehabilitated with nonsplinted prostheses). Oblique forces were simulated in molars (365 N) and premolars (200 N). Qualitative and quantitative analyses of the minimum principal stress in bone were performed using ANSYS Workbench software, version 10.0. The use of splinting in the short group reduced the stress to the bone surrounding the implants and tooth. The use of NSP or SP in the regular group resulted in similar stresses. The best indication when there are short implants is to use SP. Use of NSP is feasible only when regular implants are present.

  13. Recognition of long-term behaviors by parsing sequences of short-term actions with a stochastic regular grammar

    NARCIS (Netherlands)

    Sanromà, G.; Burghouts, G.J.; Schutte, K.

    2012-01-01

    Human behavior understanding from visual data has applications such as threat recognition. A lot of approaches are restricted to limited time actions, which we call short-term actions. Long-term behaviors are sequences of short-term actions that are more extended in time. Our hypothesis is that they

  14. Hybrid Short Term Wind Speed Forecasting Using Variational Mode Decomposition and a Weighted Regularized Extreme Learning Machine

    OpenAIRE

    Nantian Huang; Chong Yuan; Guowei Cai; Enkai Xing

    2016-01-01

    Accurate wind speed forecasting is a fundamental element of wind power prediction. Thus, a new hybrid wind speed forecasting model, using variational mode decomposition (VMD), the partial autocorrelation function (PACF), and weighted regularized extreme learning machine (WRELM), is proposed to improve the accuracy of wind speed forecasting. First, the historic wind speed time series is decomposed into several intrinsic mode functions (IMFs). Second, the partial correlation of each IMF sequenc...

  15. A Short and Personal History of the Spitzer Space Telescope

    OpenAIRE

    Werner, Michael

    2006-01-01

    The Spitzer Space Telescope, born as the Shuttle Infrared Telescope Facility (SIRTF) and later the Space Infrared Telescope Facility (still SIRTF), was under discussion and development within NASA and the scientific community for more than 30 years prior to its launch in 2003. This brief history chronicles a few of the highlights and the lowlights of those 30 years from the authors personal perspective. A much more comprehensive history of SIRTF/Spitzer has been written by George Rieke (2006).

  16. Hybrid Short Term Wind Speed Forecasting Using Variational Mode Decomposition and a Weighted Regularized Extreme Learning Machine

    Directory of Open Access Journals (Sweden)

    Nantian Huang

    2016-11-01

    Full Text Available Accurate wind speed forecasting is a fundamental element of wind power prediction. Thus, a new hybrid wind speed forecasting model, using variational mode decomposition (VMD, the partial autocorrelation function (PACF, and weighted regularized extreme learning machine (WRELM, is proposed to improve the accuracy of wind speed forecasting. First, the historic wind speed time series is decomposed into several intrinsic mode functions (IMFs. Second, the partial correlation of each IMF sequence is analyzed using PACF to select the optimal subfeature set for particular predictors of each IMF. Then, the predictors of each IMF are constructed in order to enhance its strength using WRELM. Finally, wind speed is obtained by adding up all the predictors. The experiment, using real wind speed data, verified the effectiveness and advancement of the new approach.

  17. A Suborbital Spaceship for Short Duration Space and Microsat Launch

    OpenAIRE

    Bahn, Pat

    2005-01-01

    The TGV Rockets corporation is working on a small Vertical Takeoff Vertical Landing Suborbital Rocketship capable of carrying 1000 kg to 100 km for low cost. This provides unique and interesting capabilities for payload test and qualification, development and short duration experimentation. Theoretical possibilities include micro-sat launch. TGV Rockets was founded in 1997 on a desire to commercialize the Delta Clipper-Experimental (DC-X)1,5,8. Subsequently TGV has been working towards th...

  18. Simulation of canopy CO2 flux for a rubber plantation: the effect of the regular spacing of trees

    Science.gov (United States)

    Kumagai, T.; Mudd, R. G.; Miyazawa, Y.; Liu, W.; Giambelluca, T. W.; Kobayashi, N.; LimKhan, T.; Jomura, M.; Matsumoto, K.; Huang, M.; Chen, Q.; Yin, S.

    2012-12-01

    Rubber plantations are rapidly expanding to not only optimal but also sub-optimal environments throughout mainland Southeast Asia region. What the environmental problems are induced by this vast land-use change and how the changed environment influences the rubber plantation productivities have been concerned. For this investigation, describing the biosphere-atmosphere exchange in the rubber plantations with understanding the environmental process is essential, and soil-vegetation-atmosphere transfer (SVAT) model coupling ecophysiological and biogeochemical principles at the leaf scale with detailed turbulent transport mechanics is the promising tool. A regular spacing of trees is a marked characteristic of rubber plantations and generate their peculiar canopy structure. The SVAT models, however, have paid less attention to how to account for such a canopy properties in the model and how to evaluate it in the field observation. In this study, we developed the SVAT model applicable to the rubber plantation and an evaluation method for its canopy structure, and examine how the peculiar canopy structure affect the canopy CO2 exchange by comparing model results with measurements conducted at a rubber plantation in Cambodia. The findings suggest that it is impossible to reproduce the observed rubber plantation flux without accounting for the intensive canopy clumping.

  19. Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)

    DEFF Research Database (Denmark)

    Lintner, Nathanael G; Kerou, Melina; Brumfield, Susan K

    2011-01-01

    In response to viral infection, many prokaryotes incorporate fragments of virus-derived DNA into loci called clustered regularly interspaced short palindromic repeats (CRISPRs). The loci are then transcribed, and the processed CRISPR transcripts are used to target invading viral DNA and RNA....... The Escherichia coli "CRISPR-associated complex for antiviral defense" (CASCADE) is central in targeting invading DNA. Here we report the structural and functional characterization of an archaeal CASCADE (aCASCADE) from Sulfolobus solfataricus. Tagged Csa2 (Cas7) expressed in S. solfataricus co-purifies with Cas5......a-, Cas6-, Csa5-, and Cas6-processed CRISPR-RNA (crRNA). Csa2, the dominant protein in aCASCADE, forms a stable complex with Cas5a. Transmission electron microscopy reveals a helical complex of variable length, perhaps due to substoichiometric amounts of other CASCADE components. A recombinant Csa2...

  20. Disruption of human papillomavirus 16 E6 gene by clustered regularly interspaced short palindromic repeat/Cas system in human cervical cancer cells [Retraction

    Directory of Open Access Journals (Sweden)

    Yu L

    2017-06-01

    Full Text Available Yu L, Wang XL, Zhu D, et al. Disruption of human papillomavirus 16 E6 gene by clustered regularly interspaced short palindromic repeat/Cas system in human cervical cancer cells. OncoTargets and Therapy. 2015;8:37–44 was published subsequent to Hu Z, Yu L, Zhu D, et al. Disruption of HPV16-E7 by CRISPR/Cas system induces apoptosis and growth inhibition in HPV16 positive human cervical cancer cells. BioMed Research International. 2014 (2014, Article ID 612823.When comparing the above papers it becomes apparent that they have an unacceptably high degree of similarity and re-use. Accordingly, the Editor-in-Chief and Publisher have issued this Notice of Retraction.This retraction relates toThis retraction also relates to  

  1. Inference of gene regulatory networks incorporating multi-source biological knowledge via a state space model with L1 regularization.

    Directory of Open Access Journals (Sweden)

    Takanori Hasegawa

    Full Text Available Comprehensive understanding of gene regulatory networks (GRNs is a major challenge in the field of systems biology. Currently, there are two main approaches in GRN analysis using time-course observation data, namely an ordinary differential equation (ODE-based approach and a statistical model-based approach. The ODE-based approach can generate complex dynamics of GRNs according to biologically validated nonlinear models. However, it cannot be applied to ten or more genes to simultaneously estimate system dynamics and regulatory relationships due to the computational difficulties. The statistical model-based approach uses highly abstract models to simply describe biological systems and to infer relationships among several hundreds of genes from the data. However, the high abstraction generates false regulations that are not permitted biologically. Thus, when dealing with several tens of genes of which the relationships are partially known, a method that can infer regulatory relationships based on a model with low abstraction and that can emulate the dynamics of ODE-based models while incorporating prior knowledge is urgently required. To accomplish this, we propose a method for inference of GRNs using a state space representation of a vector auto-regressive (VAR model with L1 regularization. This method can estimate the dynamic behavior of genes based on linear time-series modeling constructed from an ODE-based model and can infer the regulatory structure among several tens of genes maximizing prediction ability for the observational data. Furthermore, the method is capable of incorporating various types of existing biological knowledge, e.g., drug kinetics and literature-recorded pathways. The effectiveness of the proposed method is shown through a comparison of simulation studies with several previous methods. For an application example, we evaluated mRNA expression profiles over time upon corticosteroid stimulation in rats, thus incorporating

  2. Inference of gene regulatory networks incorporating multi-source biological knowledge via a state space model with L1 regularization.

    Science.gov (United States)

    Hasegawa, Takanori; Yamaguchi, Rui; Nagasaki, Masao; Miyano, Satoru; Imoto, Seiya

    2014-01-01

    Comprehensive understanding of gene regulatory networks (GRNs) is a major challenge in the field of systems biology. Currently, there are two main approaches in GRN analysis using time-course observation data, namely an ordinary differential equation (ODE)-based approach and a statistical model-based approach. The ODE-based approach can generate complex dynamics of GRNs according to biologically validated nonlinear models. However, it cannot be applied to ten or more genes to simultaneously estimate system dynamics and regulatory relationships due to the computational difficulties. The statistical model-based approach uses highly abstract models to simply describe biological systems and to infer relationships among several hundreds of genes from the data. However, the high abstraction generates false regulations that are not permitted biologically. Thus, when dealing with several tens of genes of which the relationships are partially known, a method that can infer regulatory relationships based on a model with low abstraction and that can emulate the dynamics of ODE-based models while incorporating prior knowledge is urgently required. To accomplish this, we propose a method for inference of GRNs using a state space representation of a vector auto-regressive (VAR) model with L1 regularization. This method can estimate the dynamic behavior of genes based on linear time-series modeling constructed from an ODE-based model and can infer the regulatory structure among several tens of genes maximizing prediction ability for the observational data. Furthermore, the method is capable of incorporating various types of existing biological knowledge, e.g., drug kinetics and literature-recorded pathways. The effectiveness of the proposed method is shown through a comparison of simulation studies with several previous methods. For an application example, we evaluated mRNA expression profiles over time upon corticosteroid stimulation in rats, thus incorporating corticosteroid

  3. Combinatorial and model-theoretical principles related to regularity of ultrafilters and compactness of topological spaces. III

    OpenAIRE

    Lipparini, Paolo

    2008-01-01

    We generalize the results from "P. Lipparini, Productive $[\\lambda,\\mu]$-compactness and regular ultrafilters, Topology Proceedings, 21 (1996), 161--171"; in particular the present results apply to singular cardinals, too.

  4. An active immune defense with a minimal CRISPR (clustered regularly interspaced short palindromic repeats) RNA and without the Cas6 protein.

    Science.gov (United States)

    Maier, Lisa-Katharina; Stachler, Aris-Edda; Saunders, Sita J; Backofen, Rolf; Marchfelder, Anita

    2015-02-13

    The prokaryotic immune system CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR-associated) is a defense system that protects prokaryotes against foreign DNA. The short CRISPR RNAs (crRNAs) are central components of this immune system. In CRISPR-Cas systems type I and III, crRNAs are generated by the endonuclease Cas6. We developed a Cas6b-independent crRNA maturation pathway for the Haloferax type I-B system in vivo that expresses a functional crRNA, which we termed independently generated crRNA (icrRNA). The icrRNA is effective in triggering degradation of an invader plasmid carrying the matching protospacer sequence. The Cas6b-independent maturation of the icrRNA allowed mutation of the repeat sequence without interfering with signals important for Cas6b processing. We generated 23 variants of the icrRNA and analyzed them for activity in the interference reaction. icrRNAs with deletions or mutations of the 3' handle are still active in triggering an interference reaction. The complete 3' handle could be removed without loss of activity. However, manipulations of the 5' handle mostly led to loss of interference activity. Furthermore, we could show that in the presence of an icrRNA a strain without Cas6b (Δcas6b) is still active in interference. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

  5. An Active Immune Defense with a Minimal CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) RNA and without the Cas6 Protein*

    Science.gov (United States)

    Maier, Lisa-Katharina; Stachler, Aris-Edda; Saunders, Sita J.; Backofen, Rolf; Marchfelder, Anita

    2015-01-01

    The prokaryotic immune system CRISPR-Cas (clustered regularly interspaced short palindromic repeats-CRISPR-associated) is a defense system that protects prokaryotes against foreign DNA. The short CRISPR RNAs (crRNAs) are central components of this immune system. In CRISPR-Cas systems type I and III, crRNAs are generated by the endonuclease Cas6. We developed a Cas6b-independent crRNA maturation pathway for the Haloferax type I-B system in vivo that expresses a functional crRNA, which we termed independently generated crRNA (icrRNA). The icrRNA is effective in triggering degradation of an invader plasmid carrying the matching protospacer sequence. The Cas6b-independent maturation of the icrRNA allowed mutation of the repeat sequence without interfering with signals important for Cas6b processing. We generated 23 variants of the icrRNA and analyzed them for activity in the interference reaction. icrRNAs with deletions or mutations of the 3′ handle are still active in triggering an interference reaction. The complete 3′ handle could be removed without loss of activity. However, manipulations of the 5′ handle mostly led to loss of interference activity. Furthermore, we could show that in the presence of an icrRNA a strain without Cas6b (Δcas6b) is still active in interference. PMID:25512373

  6. Association of clustered regularly interspaced short palindromic repeat (CRISPR) elements with specific serotypes and virulence potential of shiga toxin-producing Escherichia coli.

    Science.gov (United States)

    Toro, Magaly; Cao, Guojie; Ju, Wenting; Allard, Marc; Barrangou, Rodolphe; Zhao, Shaohua; Brown, Eric; Meng, Jianghong

    2014-02-01

    Shiga toxin-producing Escherichia coli (STEC) strains (n = 194) representing 43 serotypes and E. coli K-12 were examined for clustered regularly interspaced short palindromic repeat (CRISPR) arrays to study genetic relatedness among STEC serotypes. A subset of the strains (n = 81) was further analyzed for subtype I-E cas and virulence genes to determine a possible association of CRISPR elements with potential virulence. Four types of CRISPR arrays were identified. CRISPR1 and CRISPR2 were present in all strains tested; 1 strain also had both CRISPR3 and CRISPR4, whereas 193 strains displayed a short, combined array, CRISPR3-4. A total of 3,353 spacers were identified, representing 528 distinct spacers. The average length of a spacer was 32 bp. Approximately one-half of the spacers (54%) were unique and found mostly in strains of less common serotypes. Overall, CRISPR spacer contents correlated well with STEC serotypes, and identical arrays were shared between strains with the same H type (O26:H11, O103:H11, and O111:H11). There was no association identified between the presence of subtype I-E cas and virulence genes, but the total number of spacers had a negative correlation with potential pathogenicity (P CRISPR-cas system and potential virulence needs to be determined on a broader scale, and the biological link will need to be established.

  7. Intricate interactions between the bloom-forming cyanobacterium Microcystis aeruginosa and foreign genetic elements, revealed by diversified clustered regularly interspaced short palindromic repeat (CRISPR) signatures.

    Science.gov (United States)

    Kuno, Sotaro; Yoshida, Takashi; Kaneko, Takakazu; Sako, Yoshihiko

    2012-08-01

    Clustered regularly interspaced short palindromic repeats (CRISPR) confer sequence-dependent, adaptive resistance in prokaryotes against viruses and plasmids via incorporation of short sequences, called spacers, derived from foreign genetic elements. CRISPR loci are thus considered to provide records of past infections. To describe the host-parasite (i.e., cyanophages and plasmids) interactions involving the bloom-forming freshwater cyanobacterium Microcystis aeruginosa, we investigated CRISPR in four M. aeruginosa strains and in two previously sequenced genomes. The number of spacers in each locus was larger than the average among prokaryotes. All spacers were strain specific, except for a string of 11 spacers shared in two closely related strains, suggesting diversification of the loci. Using CRISPR repeat-based PCR, 24 CRISPR genotypes were identified in a natural cyanobacterial community. Among 995 unique spacers obtained, only 10 sequences showed similarity to M. aeruginosa phage Ma-LMM01. Of these, six spacers showed only silent or conservative nucleotide mutations compared to Ma-LMM01 sequences, suggesting a strategy by the cyanophage to avert CRISPR immunity dependent on nucleotide identity. These results imply that host-phage interactions can be divided into M. aeruginosa-cyanophage combinations rather than pandemics of population-wide infectious cyanophages. Spacer similarity also showed frequent exposure of M. aeruginosa to small cryptic plasmids that were observed only in a few strains. Thus, the diversification of CRISPR implies that M. aeruginosa has been challenged by diverse communities (almost entirely uncharacterized) of cyanophages and plasmids.

  8. Combination of the clustered regularly interspaced short palindromic repeats (CRISPR)-associated 9 technique with the piggybac transposon system for mouse in utero electroporation to study cortical development.

    Science.gov (United States)

    Cheng, Man; Jin, Xubin; Mu, Lili; Wang, Fangyu; Li, Wei; Zhong, Xiaoling; Liu, Xuan; Shen, Wenchen; Liu, Ying; Zhou, Yan

    2016-09-01

    In utero electroporation (IUE) is commonly used to study cortical development of cerebrum by downregulating or overexpressing genes of interest in neural progenitor cells (NPCs) of small mammals. However, exogenous plasmids are lost or diluted over time. Furthermore, gene knockdown based on short-hairpin RNAs may exert nonspecific effects that lead to aberrant neuronal migration. Genomic engineering by the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated 9 (Cas9) system has great research and therapeutic potentials. Here we integrate the CRISPR/Cas9 components into the piggyBac (PB) transposon system (the CRISPR/Cas9-PB toolkit) for cortical IUEs. The mouse Sry-related HMG box-2 (Sox2) gene was selected as the target for its application. Most transduced cortical NPCs were depleted of SOX2 protein as early as 3 days post-IUE, whereas expressions of SOX1 and PAX6 remained intact. Furthermore, both the WT Cas9 and the D10A nickase mutant Cas9n showed comparable knockout efficiency. Transduced cortical cells were purified with fluorescence-activated cell sorting, and effective gene editing at the Sox2 loci was confirmed. Thus, application of the CRISPR/Cas9-PB toolkit in IUE is a promising strategy to study gene functions in cortical NPCs and their progeny. © 2016 Wiley Periodicals, Inc. © 2016 Wiley Periodicals, Inc.

  9. Application of Fourier-wavelet regularized deconvolution for improving image quality of free space propagation x-ray phase contrast imaging.

    Science.gov (United States)

    Zhou, Zhongxing; Gao, Feng; Zhao, Huijuan; Zhang, Lixin

    2012-11-21

    New x-ray phase contrast imaging techniques without using synchrotron radiation confront a common problem from the negative effects of finite source size and limited spatial resolution. These negative effects swamp the fine phase contrast fringes and make them almost undetectable. In order to alleviate this problem, deconvolution procedures should be applied to the blurred x-ray phase contrast images. In this study, three different deconvolution techniques, including Wiener filtering, Tikhonov regularization and Fourier-wavelet regularized deconvolution (ForWaRD), were applied to the simulated and experimental free space propagation x-ray phase contrast images of simple geometric phantoms. These algorithms were evaluated in terms of phase contrast improvement and signal-to-noise ratio. The results demonstrate that the ForWaRD algorithm is most appropriate for phase contrast image restoration among above-mentioned methods; it can effectively restore the lost information of phase contrast fringes while reduce the amplified noise during Fourier regularization.

  10. Arrangement and number of clustered regularly interspaced short palindromic repeat spacers are associated with erythromycin susceptibility in emm12, emm75 and emm92 of group A streptococcus.

    Science.gov (United States)

    Zheng, P-X; Chiang-Ni, C; Wang, S-Y; Tsai, P-J; Kuo, C-F; Chuang, W-J; Lin, Y-S; Liu, C-C; Wu, J-J

    2014-06-01

    Clustered regularly interspaced short palindromic repeats (CRISPR) are composed of numerous repeat-spacer units and are considered a prokaryotic defence system against foreign nucleic acids. Since antibiotic-resistant genes are frequently encoded in foreign nucleic acids, the aim of this study was to test whether erythromycin susceptibility in group A streptococcus (Streptococcus pyogenes) is associated with characteristics of CRISPR elements. Erythromycin susceptibility of 330 isolates collected between 1997 and 2003 was analysed. Among 29 emm types, emm12, emm75 and emm92 showed significant changes in erythromycin-resistance rates. By sequencing the spacers from two CRISPR loci, spacer contents in emm12, emm75 and emm92 strains were associated with erythromycin susceptibility. Strains with fewer spacers were more resistant to erythromycin. Moreover, in emm4 strains, which showed no significant change in their annual erythromycin-resistance rate, CRISPR type and number of spacers were not correlated with erythromycin susceptibility. These results highlight a novel association between CRISPR spacer content and erythromycin susceptibility in group A streptococcus. © 2013 The Authors Clinical Microbiology and Infection © 2013 European Society of Clinical Microbiology and Infectious Diseases.

  11. The clustered regularly interspaced short palindromic repeats/associated proteins system for the induction of gene mutations and phenotypic changes in Bombyx mori.

    Science.gov (United States)

    Song, Jia; Che, Jiaqian; You, Zhengying; Ye, Xiaogang; Li, Jisheng; Ye, Lupeng; Zhang, Yuyu; Qian, Qiujie; Zhong, Boxiong

    2016-12-01

    To probe the general phenomena of gene mutations, Bombyx mori, the lepidopterous model organism, was chosen as the experimental model. To easily detect phenotypic variations, the piggyBac system was utilized to introduce two marker genes into the silkworm, and 23.4% transposition efficiency aided in easily breeding a new strain for the entire experiment. Then, the clustered regularly interspaced short palindromic repeats/an associated protein (Cas9) system was utilized. The results showed that the Cas9 system can induce efficient gene mutations and the base changes could be detected since the G0 individuals in B. mori; and that the mutation rates on different target sites were diverse. Next, the gRNA2-targeted site that generated higher mutation rate was chosen, and the experimental results were enumerated. First, the mutation proportion in G1 generation was 30.1%, and some gene mutations were not inherited from the G0 generation; second, occasionally, base substitutions did not lead to variation in the amino-acid sequence, which decreased the efficiency of phenotypic changes compared with that of genotypic changes. These results laid the foundation for better use of the Cas9 system in silkworm gene editing. © The Author 2016. Published by Oxford University Press on behalf of the Institute of Biochemistry and Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  12. Molecular identification and characterization of clustered regularly interspaced short palindromic repeats (CRISPRs) in a urease-positive thermophilic Campylobacter sp. (UPTC).

    Science.gov (United States)

    Tasaki, E; Hirayama, J; Tazumi, A; Hayashi, K; Hara, Y; Ueno, H; Moore, J E; Millar, B C; Matsuda, M

    2012-02-01

    Novel clustered regularly-interspaced short palindromic repeats (CRISPRs) locus [7,500 base pairs (bp) in length] occurred in the urease-positive thermophilic Campylobacter (UPTC) Japanese isolate, CF89-12. The 7,500 bp gene loci consisted of the 5'-methylaminomethyl-2-thiouridylate methyltransferase gene, putative (P) CRISPR associated (p-Cas), putative open reading frames, Cas1 and Cas2, leader sequence region (146 bp), 12 CRISPRs consensus sequence repeats (each 36 bp) separated by a non-repetitive unique spacer region of similar length (26-31 bp) and the phosphatidyl glycerophosphatase A gene. When the CRISPRs loci in the UPTC CF89-12 and five C. jejuni isolates were compared with one another, these six isolates contained p-Cas, Cas1 and Cas2 within the loci. Four to 12 CRISPRs consensus sequence repeats separated by a non-repetitive unique spacer region occurred in six isolates and the nucleotide sequences of those repeats gave approximately 92-100% similarity with each other. However, no sequence similarity occurred in the unique spacer regions among these isolates. The putative σ(70) transcriptional promoter and the hypothetical ρ-independent terminator structures for the CRISPRs and Cas were detected. No in vivo transcription of p-Cas, Cas1 and Cas2 was confirmed in the UPTC cells.

  13. Crystal Structure of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-associated Csn2 Protein Revealed Ca[superscript 2+]-dependent Double-stranded DNA Binding Activity

    Energy Technology Data Exchange (ETDEWEB)

    Nam, Ki Hyun; Kurinov, Igor; Ke, Ailong (Cornell); (NWU)

    2012-05-22

    Clustered regularly interspaced short palindromic repeats (CRISPR) and their associated protein genes (cas genes) are widespread in bacteria and archaea. They form a line of RNA-based immunity to eradicate invading bacteriophages and malicious plasmids. A key molecular event during this process is the acquisition of new spacers into the CRISPR loci to guide the selective degradation of the matching foreign genetic elements. Csn2 is a Nmeni subtype-specific cas gene required for new spacer acquisition. Here we characterize the Enterococcus faecalis Csn2 protein as a double-stranded (ds-) DNA-binding protein and report its 2.7 {angstrom} tetrameric ring structure. The inner circle of the Csn2 tetrameric ring is {approx}26 {angstrom} wide and populated with conserved lysine residues poised for nonspecific interactions with ds-DNA. Each Csn2 protomer contains an {alpha}/{beta} domain and an {alpha}-helical domain; significant hinge motion was observed between these two domains. Ca{sup 2+} was located at strategic positions in the oligomerization interface. We further showed that removal of Ca{sup 2+} ions altered the oligomerization state of Csn2, which in turn severely decreased its affinity for ds-DNA. In summary, our results provided the first insight into the function of the Csn2 protein in CRISPR adaptation by revealing that it is a ds-DNA-binding protein functioning at the quaternary structure level and regulated by Ca{sup 2+} ions.

  14. Disruption of human papillomavirus 16 E6 gene by clustered regularly interspaced short palindromic repeat/Cas system in human cervical cancer cells

    Directory of Open Access Journals (Sweden)

    Yu L

    2014-12-01

    Full Text Available Lan Yu, Xiaoli Wang, Da Zhu, Wencheng Ding, Liming Wang, Changlin Zhang, Xiaohui Jiang, Hui Shen, Shujie Liao, Ding Ma, Zheng Hu, Hui Wang Cancer Biology Research Center, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, People's Republic of China Abstract: High-risk human papillomavirus (HPV, especially HPV16, is considered a main causative agent of cervical cancer. Upon HPV infection, the viral oncoprotein E6 disrupts the host tumor-suppressor protein p53, thus promoting malignant transformation of normal cervical cells. Here, we used the newly developed programmable ribonucleic acid-guided clustered regularly interspaced short palindromic repeat (CRISPR/Cas system to disrupt the HPV16 E6 gene. We showed that HPV16 E6 deoxyribonucleic acid was cleaved at specific sites, leading to apoptosis and growth inhibition of HPV16-positive SiHa and CaSki cells, but not HPV-negative C33A or human embryonic kidney 293 cells. We also observed downregulation of the E6 protein and restoration of the p53 protein. These data proved that the HPV16 E6 ribonucleic acid-guided CRISPR/Cas system might be an effective therapeutic agent in treating HPV infection-related cervical malignancy. Keywords: CRISPR/Cas system, E6, p53, SiHa, CaSki, cervical cancer

  15. Transgenic Clustered Regularly Interspaced Short Palindromic Repeat/Cas9-Mediated Viral Gene Targeting for Antiviral Therapy of Bombyx mori Nucleopolyhedrovirus.

    Science.gov (United States)

    Chen, Shuqing; Hou, Chengxiang; Bi, Honglun; Wang, Yueqiang; Xu, Jun; Li, Muwang; James, Anthony A; Huang, Yongping; Tan, Anjiang

    2017-04-15

    We developed a novel antiviral strategy by combining transposon-based transgenesis and the clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated 9 (Cas9) system for the direct cleavage of Bombyx mori nucleopolyhedrovirus (BmNPV) genome DNA to promote virus clearance in silkworms. We demonstrate that transgenic silkworms constitutively expressing Cas9 and guide RNAs targeting the BmNPV immediate early-1 ( ie-1 ) and me53 genes effectively induce target-specific cleavage and subsequent mutagenesis, especially large (∼7-kbp) segment deletions in BmNPV genomes, and thus exhibit robust suppression of BmNPV proliferation. Transgenic animals exhibited higher and inheritable resistance to BmNPV infection than wild-type animals. Our approach will not only contribute to modern sericulture but also shed light on future antiviral therapy. IMPORTANCE Pathogen genome targeting has shown its potential in antiviral research. However, transgenic CRISPR/Cas9 system-mediated viral genome targeting has not been reported as an antiviral strategy in a natural animal host of a virus. Our data provide an effective approach against BmNPV infection in a real-world biological system and demonstrate the potential of transgenic CRISPR/Cas9 systems in antiviral research in other species. Copyright © 2017 Chen et al.

  16. Structural and biochemical analysis of nuclease domain of clustered regularly interspaced short palindromic repeat (CRISPR)-associated protein 3 (Cas3).

    Science.gov (United States)

    Mulepati, Sabin; Bailey, Scott

    2011-09-09

    RNA transcribed from clustered regularly interspaced short palindromic repeats (CRISPRs) protects many prokaryotes from invasion by foreign DNA such as viruses, conjugative plasmids, and transposable elements. Cas3 (CRISPR-associated protein 3) is essential for this CRISPR protection and is thought to mediate cleavage of the foreign DNA through its N-terminal histidine-aspartate (HD) domain. We report here the 1.8 Å crystal structure of the HD domain of Cas3 from Thermus thermophilus HB8. Structural and biochemical studies predict that this enzyme binds two metal ions at its active site. We also demonstrate that the single-stranded DNA endonuclease activity of this T. thermophilus domain is activated not by magnesium but by transition metal ions such as manganese and nickel. Structure-guided mutagenesis confirms the importance of the metal-binding residues for the nuclease activity and identifies other active site residues. Overall, these results provide a framework for understanding the role of Cas3 in the CRISPR system.

  17. Structural and functional characterization of an archaeal clustered regularly interspaced short palindromic repeat (CRISPR)-associated complex for antiviral defense (CASCADE).

    Science.gov (United States)

    Lintner, Nathanael G; Kerou, Melina; Brumfield, Susan K; Graham, Shirley; Liu, Huanting; Naismith, James H; Sdano, Matthew; Peng, Nan; She, Qunxin; Copié, Valérie; Young, Mark J; White, Malcolm F; Lawrence, C Martin

    2011-06-17

    In response to viral infection, many prokaryotes incorporate fragments of virus-derived DNA into loci called clustered regularly interspaced short palindromic repeats (CRISPRs). The loci are then transcribed, and the processed CRISPR transcripts are used to target invading viral DNA and RNA. The Escherichia coli "CRISPR-associated complex for antiviral defense" (CASCADE) is central in targeting invading DNA. Here we report the structural and functional characterization of an archaeal CASCADE (aCASCADE) from Sulfolobus solfataricus. Tagged Csa2 (Cas7) expressed in S. solfataricus co-purifies with Cas5a-, Cas6-, Csa5-, and Cas6-processed CRISPR-RNA (crRNA). Csa2, the dominant protein in aCASCADE, forms a stable complex with Cas5a. Transmission electron microscopy reveals a helical complex of variable length, perhaps due to substoichiometric amounts of other CASCADE components. A recombinant Csa2-Cas5a complex is sufficient to bind crRNA and complementary ssDNA. The structure of Csa2 reveals a crescent-shaped structure unexpectedly composed of a modified RNA-recognition motif and two additional domains present as insertions in the RNA-recognition motif. Conserved residues indicate potential crRNA- and target DNA-binding sites, and the H160A variant shows significantly reduced affinity for crRNA. We propose a general subunit architecture for CASCADE in other bacteria and Archaea.

  18. Characterization of genomic deletion efficiency mediated by clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 nuclease system in mammalian cells.

    Science.gov (United States)

    Canver, Matthew C; Bauer, Daniel E; Dass, Abhishek; Yien, Yvette Y; Chung, Jacky; Masuda, Takeshi; Maeda, Takahiro; Paw, Barry H; Orkin, Stuart H

    2014-08-01

    The clustered regularly interspaced short [corrected] palindromic repeats (CRISPR)/CRISPR-associated (Cas) 9 nuclease system has provided a powerful tool for genome engineering. Double strand breaks may trigger nonhomologous end joining repair, leading to frameshift mutations, or homology-directed repair using an extrachromosomal template. Alternatively, genomic deletions may be produced by a pair of double strand breaks. The efficiency of CRISPR/Cas9-mediated genomic deletions has not been systematically explored. Here, we present a methodology for the production of deletions in mammalian cells, ranging from 1.3 kb to greater than 1 Mb. We observed a high frequency of intended genomic deletions. Nondeleted alleles are nonetheless often edited with inversions or small insertion/deletions produced at CRISPR recognition sites. Deleted alleles also typically include small insertion/deletions at predicted deletion junctions. We retrieved cells with biallelic deletion at a frequency exceeding that of probabilistic expectation. We demonstrate an inverse relationship between deletion frequency and deletion size. This work suggests that CRISPR/Cas9 is a robust system to produce a spectrum of genomic deletions to allow investigation of genes and genetic elements. © 2014 by The American Society for Biochemistry and Molecular Biology, Inc.

  19. Crystal structure of clustered regularly interspaced short palindromic repeats (CRISPR)-associated Csn2 protein revealed Ca2+-dependent double-stranded DNA binding activity.

    Science.gov (United States)

    Nam, Ki Hyun; Kurinov, Igor; Ke, Ailong

    2011-09-02

    Clustered regularly interspaced short palindromic repeats (CRISPR) and their associated protein genes (cas genes) are widespread in bacteria and archaea. They form a line of RNA-based immunity to eradicate invading bacteriophages and malicious plasmids. A key molecular event during this process is the acquisition of new spacers into the CRISPR loci to guide the selective degradation of the matching foreign genetic elements. Csn2 is a Nmeni subtype-specific cas gene required for new spacer acquisition. Here we characterize the Enterococcus faecalis Csn2 protein as a double-stranded (ds-) DNA-binding protein and report its 2.7 Å tetrameric ring structure. The inner circle of the Csn2 tetrameric ring is ∼26 Å wide and populated with conserved lysine residues poised for nonspecific interactions with ds-DNA. Each Csn2 protomer contains an α/β domain and an α-helical domain; significant hinge motion was observed between these two domains. Ca(2+) was located at strategic positions in the oligomerization interface. We further showed that removal of Ca(2+) ions altered the oligomerization state of Csn2, which in turn severely decreased its affinity for ds-DNA. In summary, our results provided the first insight into the function of the Csn2 protein in CRISPR adaptation by revealing that it is a ds-DNA-binding protein functioning at the quaternary structure level and regulated by Ca(2+) ions.

  20. High-temperature protein G is essential for activity of the Escherichia coli clustered regularly interspaced short palindromic repeats (CRISPR)/Cas system.

    Science.gov (United States)

    Yosef, Ido; Goren, Moran G; Kiro, Ruth; Edgar, Rotem; Qimron, Udi

    2011-12-13

    Prokaryotic DNA arrays arranged as clustered regularly interspaced short palindromic repeats (CRISPR), along with their associated proteins, provide prokaryotes with adaptive immunity by RNA-mediated targeting of alien DNA or RNA matching the sequences between the repeats. Here, we present a thorough screening system for the identification of bacterial proteins participating in immunity conferred by the Escherichia coli CRISPR system. We describe the identification of one such protein, high-temperature protein G (HtpG), a homolog of the eukaryotic chaperone heat-shock protein 90. We demonstrate that in the absence of htpG, the E. coli CRISPR system loses its suicidal activity against λ prophage and its ability to provide immunity from lysogenization. Transcomplementation of htpG restores CRISPR activity. We further show that inactivity of the CRISPR system attributable to htpG deficiency can be suppressed by expression of Cas3, a protein that is essential for its activity. Accordingly, we also find that the steady-state level of overexpressed Cas3 is significantly enhanced following HtpG expression. We conclude that HtpG is a newly identified positive modulator of the CRISPR system that is essential for maintaining functional levels of Cas3.

  1. Subtyping Salmonella enterica serovar enteritidis isolates from different sources by using sequence typing based on virulence genes and clustered regularly interspaced short palindromic repeats (CRISPRs).

    Science.gov (United States)

    Liu, Fenyun; Kariyawasam, Subhashinie; Jayarao, Bhushan M; Barrangou, Rodolphe; Gerner-Smidt, Peter; Ribot, Efrain M; Knabel, Stephen J; Dudley, Edward G

    2011-07-01

    Salmonella enterica subsp. enterica serovar Enteritidis is a major cause of food-borne salmonellosis in the United States. Two major food vehicles for S. Enteritidis are contaminated eggs and chicken meat. Improved subtyping methods are needed to accurately track specific strains of S. Enteritidis related to human salmonellosis throughout the chicken and egg food system. A sequence typing scheme based on virulence genes (fimH and sseL) and clustered regularly interspaced short palindromic repeats (CRISPRs)-CRISPR-including multi-virulence-locus sequence typing (designated CRISPR-MVLST)-was used to characterize 35 human clinical isolates, 46 chicken isolates, 24 egg isolates, and 63 hen house environment isolates of S. Enteritidis. A total of 27 sequence types (STs) were identified among the 167 isolates. CRISPR-MVLST identified three persistent and predominate STs circulating among U.S. human clinical isolates and chicken, egg, and hen house environmental isolates in Pennsylvania, and an ST that was found only in eggs and humans. It also identified a potential environment-specific sequence type. Moreover, cluster analysis based on fimH and sseL identified a number of clusters, of which several were found in more than one outbreak, as well as 11 singletons. Further research is needed to determine if CRISPR-MVLST might help identify the ecological origins of S. Enteritidis strains that contaminate chickens and eggs.

  2. Dimensional regularization and n-wave procedure for scalar fields in multi-dimensional quasi-euclidean spaces

    CERN Document Server

    Pavlov, Y V

    2001-01-01

    One derived expressions for the vacuum mean values of energy-momentum tensor of the scalar field with arbitrary relation to curvature in N-dimensional quasi-euclidean space-time for vacuum. One generalized n-wave procedure for multidimensional spaces. One calculated all counter-members for N=5 and for a conformal scalar field in N=6, 7. One determined the geometric structure of three first counter-members for N-dimensional spaces. All subtractions in 4-dimensional space-time and 3 first subtractions in multidimensional spaces are shown to correspond to renormalization of constants of priming and gravitational Lagrangian

  3. Regular icosahedron

    OpenAIRE

    Mihelak, Veronika

    2016-01-01

    Here are collected properties of regular icosahedron which are useful for students of mathematics or mathematics teachers who can prepare exercises for talented students in elementary or middle school. The initial section describes the basic properties of regular polyhedra: tetrahedron, cube, dodecahedron, octahedron and of course icosahedron. We have proven that there are only five regular or platonic solids and have verified Euler's polyhedron formula for them. Then we focused on selected p...

  4. Genus-specific protein binding to the large clusters of DNA repeats (short regularly spaced repeats) present in Sulfolobus genomes

    DEFF Research Database (Denmark)

    Peng, Xu; Brügger, Kim; Shen, Biao

    2003-01-01

    that are identical in sequence to one of the repeat variants in the S. solfataricus chromosome. Repeats from the pNOB8 cluster were amplified and tested for protein binding with cell extracts from S. solfataricus. A 17.5-kDa SRSR-binding protein was purified from the cell extracts and sequenced. The protein is N...... terminally modified and corresponds to SSO454, an open reading frame of previously unassigned function. It binds specifically to DNA fragments carrying double and single repeat sequences, binding on one side of the repeat structure, and producing an opening of the opposite side of the DNA structure. It also...... with a helix-turn-helix DNA-binding motif. Although this putative motif is shared by other archaeal proteins, orthologs of SSO454 were only detected in species within the Sulfolobus genus and in the closely related Acidianus genus. We infer that the genus-specific protein induces an opening of the structure...

  5. Maximal ? -regularity

    NARCIS (Netherlands)

    Van Neerven, J.M.A.M.; Veraar, M.C.; Weis, L.

    2015-01-01

    In this paper, we prove maximal regularity estimates in “square function spaces” which are commonly used in harmonic analysis, spectral theory, and stochastic analysis. In particular, they lead to a new class of maximal regularity results for both deterministic and stochastic equations in L p

  6. Simulation of Canopy CO2/H2O Fluxes for a Rubber (Hevea Brasiliensis) Plantation in Central Cambodia: The Effect of the Regular Spacing of Planted Trees

    Energy Technology Data Exchange (ETDEWEB)

    Kumagai, Tomo' omi; Mudd, Ryan; Miyazawa, Yoshiyuki; Liu, Wen; Giambelluca, Thomas; Kobayashi, N.; Lim, Tiva Khan; Jomura, Mayuko; Matsumoto, Kazuho; Huang, Maoyi; Chen, Qi; Ziegler, Alan; Yin, Song

    2013-09-10

    We developed a soil-vegetation-atmosphere transfer (SVAT) model applicable to simulating CO2 and H2O fluxes from the canopies of rubber plantations, which are characterized by distinct canopy clumping produced by regular spacing of plantation trees. Rubber (Hevea brasiliensis Müll. Arg.) plantations, which are rapidly expanding into both climatically optimal and sub-optimal environments throughout mainland Southeast Asia, potentially change the partitioning of water, energy, and carbon at multiple scales, compared with traditional land covers it is replacing. Describing the biosphere-atmosphere exchange in rubber plantations via SVAT modeling is therefore essential to understanding the impacts on environmental processes. The regular spacing of plantation trees creates a peculiar canopy structure that is not well represented in most SVAT models, which generally assumes a non-uniform spacing of vegetation. Herein we develop a SVAT model applicable to rubber plantation and an evaluation method for its canopy structure, and examine how the peculiar canopy structure of rubber plantations affects canopy CO2 and H2O exchanges. Model results are compared with measurements collected at a field site in central Cambodia. Our findings suggest that it is crucial to account for intensive canopy clumping in order to reproduce observed rubber plantation fluxes. These results suggest a potentially optimal spacing of rubber trees to produce high productivity and water use efficiency.

  7. Short (

    NARCIS (Netherlands)

    Telleman, Gerdien; den Hartog, Laurens

    2013-01-01

    Aim: This systematic review assessed the implant survival rate of short (<10 mm) dental implants installed in partially edentulous patients. A case report of a short implant in the posterior region have been added. Materials and methods: A search was conducted in the electronic databases of MEDLINE

  8. Generation of Hypertension-Associated STK39 Polymorphism Knockin Cell Lines With the Clustered Regularly Interspaced Short Palindromic Repeats/Cas9 System.

    Science.gov (United States)

    Mandai, Shintaro; Mori, Takayasu; Sohara, Eisei; Rai, Tatemitsu; Uchida, Shinichi

    2015-12-01

    Previous genome-wide association studies identified serine threonine kinase 39 (STK39), encoding STE20/SPS1-related proline/alanine-rich kinase, as one of a limited number of hypertension susceptibility genes. A recent meta-analysis confirmed the association of STK39 intronic polymorphism rs3754777 with essential hypertension, among previously reported hypertension-associated STK39 polymorphisms. However, the biochemical function of this polymorphism in the mechanism responsible for hypertension is yet to be clarified. We generated rs3754777G>A knockin human cell lines with clustered regularly interspaced short palindromic repeats-mediated genome engineering. Homozygous (A/A) and heterozygous (G/A) knockin human embryonic kidney cell lines were generated using a double nickase, single-guide RNAs targeting STK39 intron 5 around single-nucleotide polymorphism, and a 100-bp donor single-stranded DNA oligonucleotide. Reverse transcription polymerase chain reaction with sequencing analyses revealed the identical STK39 transcripts among the wild-type and both knockin cell lines. Quantitative reverse transcription polymerase chain reaction showed increased STK39 mRNA expression, and immunoblot analysis revealed increases in total and phosphorylated STE20/SPS1-related proline/alanine-rich kinase with increased phosphorylated Na-K-Cl cotransporter isoform 1 in both knockin cell lines. The largest increases in these molecules were observed in the homozygous cell line. These findings indicated that this intronic polymorphism increases STK39 transcription, leading to activation of the STE20/SPS1-related proline/alanine-rich kinase-solute carrier family 12A signaling cascade. Increased interactions between STE20/SPS1-related proline/alanine-rich kinase and the target cation-chloride cotransporters may be responsible for hypertension susceptibility in individuals with this polymorphism. © 2015 American Heart Association, Inc.

  9. The evolutionary divergence of Shiga toxin-producing Escherichia coli is reflected in clustered regularly interspaced short palindromic repeat (CRISPR) spacer composition.

    Science.gov (United States)

    Yin, Shuang; Jensen, Mark A; Bai, Jiawei; Debroy, Chitrita; Barrangou, Rodolphe; Dudley, Edward G

    2013-09-01

    The Shiga toxin-producing Escherichia coli (STEC) strains, including those of O157:H7 and the "big six" serogroups (i.e., serogroups O26, O45, O103, O111, O121, and O145), are a group of pathogens designated food adulterants in the United States. The relatively conserved nature of clustered regularly interspaced short palindromic repeats (CRISPRs) in phylogenetically related E. coli strains makes them potential subtyping markers for STEC detection, and a quantitative PCR (qPCR)-based assay was previously developed for O26:H11, O45:H2, O103:H2, O111:H8, O121:H19, O145:H28, and O157:H7 isolates. To better evaluate the sensitivity and specificity of this qPCR method, the CRISPR loci of 252 O157 and big-six STEC isolates were sequenced and analyzed along with 563 CRISPR1 and 624 CRISPR2 sequences available in GenBank. General conservation of spacer content and order was observed within each O157 and big-six serogroup, validating the qPCR method. Meanwhile, it was found that spacer deletion, the presence of an insertion sequence, and distinct alleles within a serogroup are sources of false-negative reactions. Conservation of CRISPR arrays among isolates expressing the same flagellar antigen, specifically, H7, H2, and H11, suggested that these isolates share an ancestor and provided an explanation for the false positives previously observed in the qPCR results. An analysis of spacer distribution across E. coli strains provided limited evidence for temporal spacer acquisition. Conversely, comparison of CRISPR sequences between strains along the stepwise evolution of O157:H7 from its O55:H7 ancestor revealed that, over this ∼7,000-year span, spacer deletion was the primary force generating CRISPR diversity.

  10. Relationship between drug resistance and the clustered, regularly interspaced, short, palindromic repeat-associated protein genes cas1 and cas2 in Shigella from giant panda dung.

    Science.gov (United States)

    Ren, Lu; Deng, Lin-Hua; Zhang, Ri-Peng; Wang, Cheng-Dong; Li, De-Sheng; Xi, Li-Xin; Chen, Zhen-Rong; Yang, Rui; Huang, Jie; Zeng, Yang-Ru; Wu, Hong-Lin; Cao, San-Jie; Wu, Rui; Huang, Yong; Yan, Qi-Gui

    2017-02-01

    To detect drug resistance in Shigella obtained from the dung of the giant panda, explore the factors leading to drug resistance in Shigella, understand the characteristics of clustered, regularly interspaced, short, palindromic repeats (CRISPR), and assess the relationship between CRISPR and drug resistance. We collected fresh feces from 27 healthy giant pandas in the Giant Panda Conservation base (Wolong, China). We identified the strains of Shigella in the samples by using nucleotide sequence analysis. Further, the Kirby-Bauer paper method was used to determine drug sensitivity of the Shigella strains. CRISPR-associated protein genes cas1 and cas2 in Shigella were detected by polymerase chain reaction (PCR), and the PCR products were sequenced and compared. We isolated and identified 17 strains of Shigella from 27 samples, including 14 strains of Shigella flexneri, 2 strains of Shigella sonnei, and 1 strain of Shigella dysenteriae. Further, drug resistance to cefazolin, imipenem, and amoxicillin-clavulanic acid was identified as a serious problem, as multidrug-resistant strains were detected. Further, cas1 and cas2 showed different degrees of point mutations. The CRISPR system widely exists in Shigella and shares homology with that in Escherichia coli. The cas1 and cas 2 mutations contribute to the different levels of resistance. Point mutations at sites 3176455, 3176590, and 3176465 in cas1 (a); sites 3176989, 3176992, and 3176995 in cas1 (b); sites 3176156 and 3176236 in cas2 may affect the resistance of bacteria, cause emergence of multidrug resistance, and increase the types of drug resistance.

  11. Development of a local size hierarchy causes regular spacing of trees in an even-aged Abies forest: analyses using spatial autocorrelation and the mark correlation function.

    Science.gov (United States)

    Suzuki, Satoshi N; Kachi, Naoki; Suzuki, Jun-Ichirou

    2008-09-01

    During the development of an even-aged plant population, the spatial distribution of individuals often changes from a clumped pattern to a random or regular one. The development of local size hierarchies in an Abies forest was analysed for a period of 47 years following a large disturbance in 1959. In 1980 all trees in an 8 x 8 m plot were mapped and their height growth after the disturbance was estimated. Their mortality and growth were then recorded at 1- to 4-year intervals between 1980 and 2006. Spatial distribution patterns of trees were analysed by the pair correlation function. Spatial correlations between tree heights were analysed with a spatial autocorrelation function and the mark correlation function. The mark correlation function was able to detect a local size hierarchy that could not be detected by the spatial autocorrelation function alone. The small-scale spatial distribution pattern of trees changed from clumped to slightly regular during the 47 years. Mortality occurred in a density-dependent manner, which resulted in regular spacing between trees after 1980. The spatial autocorrelation and mark correlation functions revealed the existence of tree patches consisting of large trees at the initial stage. Development of a local size hierarchy was detected within the first decade after the disturbance, although the spatial autocorrelation was not negative. Local size hierarchies that developed persisted until 2006, and the spatial autocorrelation became negative at later stages (after about 40 years). This is the first study to detect local size hierarchies as a prelude to regular spacing using the mark correlation function. The results confirm that use of the mark correlation function together with the spatial autocorrelation function is an effective tool to analyse the development of a local size hierarchy of trees in a forest.

  12. Collision Avoidance "Short Course" Part III: CA Role in Changing Space Flight Environment

    Science.gov (United States)

    Newman, Lauri

    2017-01-01

    Satellite conjunction assessment is perhaps the fastest-growing area in space situational awareness and protection, with military, civil, and commercial satellite owner operators embracing more and more sophisticated processes to avoid the avoidable namely collisions between high-value space assets and orbital debris. NASA and CNES have collaborated to offer an introductory short course on all the major aspects of the conjunction assessment problem. This half-day course will cover satellite conjunction dynamics and theory, JSpOC conjunction data products, major risk assessment parameters and plots, conjunction remediation decision support, and present and future challenges. This briefing represents the NASA portion of the course.

  13. 47 CFR 73.215 - Contour protection for short-spaced assignments.

    Science.gov (United States)

    2010-10-01

    ... station pursuant to 47 CFR 73.211(b)(3): 6 kW ERP/240 meters HAAT—Class A 25 kW ERP/150 meters HAAT—Class B1 50 kW ERP/472 meters HAAT—Class B (b) Applicants requesting short-spaced assignments pursuant to... achieved: (1) The ERP and antenna HAAT of the proposed station in the direction of the contours of other...

  14. Regular Boardgames

    OpenAIRE

    Kowalski, Jakub; Sutowicz, Jakub; Szykuła, Marek

    2017-01-01

    We present an initial version of Regular Boardgames general game description language. This stands as an extension of Simplified Boardgames language. Our language is designed to be able to express the rules of a majority of popular boardgames including the complex rules such as promotions, castling, en passant, jump captures, liberty captures, and obligatory moves. The language describes all the above through one consistent general mechanism based on regular expressions, without using excepti...

  15. Morphological and phenotypical characteristics of human osteoblasts after short-term space mission.

    Science.gov (United States)

    Kapitonova, M Yu; Kuznetsov, S L; Salim, N; Othman, S; Kamauzaman, T M H T M; Ali, A M; Nawawi, H M; Nor-Ashikin, M N K; Froemming, G R A

    2014-01-01

    Morphological and phenotypical signs of cultured readaptation osteoblasts were studied after a short-term space mission. The ultrastructure and phenotype of human osteoblasts after Soyuz TMA-11 space flight (2007) were evaluated by scanning electron microscopy, laser confocal microscopy, and ELISA. The morphofunctional changes in cell cultures persisted after 12 passages. Osteoblasts retained the drastic changes in their shape and size, contour deformation, disorganization of the microtubular network, redistribution of organelles and specialized structures of the plasmalemma in comparison with the ground control cells. On the other hand, the expression of osteoprotegerin and osteocalcin (bone metabolism markers) increased; the expression of bone resorption markers ICAM-1 and IL-6 also increased, while the expression of VCAM-1 decreased. Hence, space flight led to the development of persistent shifts in cultured osteoblasts indicating injuries to the cytoskeleton and the phenotype changes, indicating modulation of bone metabolism biomarkers.

  16. Combinatorial and model-theoretical principles related to regularity of ultrafilters and compactness of topological spaces. II

    OpenAIRE

    Lipparini, Paolo

    2008-01-01

    We find many conditions equivalent to the model-theoretical property $\\lambda \\stackrel{\\kappa}{\\Rightarrow} \\mu$ introduced in [L1]. Our conditions involve uniformity of ultrafilters, compactness properties of products of topological spaces and the existence of certain infinite matrices.

  17. Survey of clustered regularly interspaced short palindromic repeats and their associated Cas proteins (CRISPR/Cas) systems in multiple sequenced strains of Klebsiella pneumoniae.

    Science.gov (United States)

    Ostria-Hernández, Martha Lorena; Sánchez-Vallejo, Carlos Javier; Ibarra, J Antonio; Castro-Escarpulli, Graciela

    2015-08-04

    In recent years the emergence of multidrug resistant Klebsiella pneumoniae strains has been an increasingly common event. This opportunistic species is one of the five main bacterial pathogens that cause hospital infections worldwide and multidrug resistance has been associated with the presence of high molecular weight plasmids. Plasmids are generally acquired through horizontal transfer and therefore is possible that systems that prevent the entry of foreign genetic material are inactive or absent. One of these systems is CRISPR/Cas. However, little is known regarding the clustered regularly interspaced short palindromic repeats and their associated Cas proteins (CRISPR/Cas) system in K. pneumoniae. The adaptive immune system CRISPR/Cas has been shown to limit the entry of foreign genetic elements into bacterial organisms and in some bacteria it has been shown to be involved in regulation of virulence genes. Thus in this work we used bioinformatics tools to determine the presence or absence of CRISPR/Cas systems in available K. pneumoniae genomes. The complete CRISPR/Cas system was identified in two out of the eight complete K. pneumoniae genomes sequences and in four out of the 44 available draft genomes sequences. The cas genes in these strains comprises eight cas genes similar to those found in Escherichia coli, suggesting they belong to the type I-E group, although their arrangement is slightly different. As for the CRISPR sequences, the average lengths of the direct repeats and spacers were 29 and 33 bp, respectively. BLAST searches demonstrated that 38 of the 116 spacer sequences (33%) are significantly similar to either plasmid, phage or genome sequences, while the remaining 78 sequences (67%) showed no significant similarity to other sequences. The region where the CRISPR/Cas systems were located is the same in all the Klebsiella genomes containing it, it has a syntenic architecture, and is located among genes encoding for proteins likely involved in

  18. Adaptive regularization

    DEFF Research Database (Denmark)

    Hansen, Lars Kai; Rasmussen, Carl Edward; Svarer, C.

    1994-01-01

    Regularization, e.g., in the form of weight decay, is important for training and optimization of neural network architectures. In this work the authors provide a tool based on asymptotic sampling theory, for iterative estimation of weight decay parameters. The basic idea is to do a gradient descent...... in the estimated generalization error with respect to the regularization parameters. The scheme is implemented in the authors' Designer Net framework for network training and pruning, i.e., is based on the diagonal Hessian approximation. The scheme does not require essential computational overhead in addition...

  19. Near-invariance under dynamic scaling for Navier-Stokes equations in critical spaces: a probabilistic approach to regularity problems

    Science.gov (United States)

    Ohkitani, Koji

    2017-01-01

    We make a detailed comparison between the Navier-Stokes equations and their dynamically scaled counterpart, the so-called Leray equations. The Navier-Stokes equations are invariant under static scaling transforms, but are not generally invariant under dynamic scaling transforms. We will study how closely they can be brought together using the critical dependent variables and discuss the implications on the regularity problems. Assuming that the Navier-Stokes equations written in the vector potential have a solution that blows up at t = 1, we derive the Leray equations by dynamic scaling. We observe: (1) the Leray equations have only one term extra on top of those of the Navier-Stokes equations (2) we can recast the Navier-Stokes equations as a Wiener path integral and the Leray equations as another Ornstein-Uhlenbeck path integral. Using the Maruyama-Girsanov theorem, both equations take the identical form modulo the Maruyama-Girsanov density, which is valid up to t=2\\sqrt{2} by the Novikov condition (3) the global solution of the Leray equations is given by a finite-dimensional projection {\\boldsymbol{R}} of a functional of an Ornstein-Uhlenbeck process and a probability measure. If {\\boldsymbol{R}} remains smooth beyond t = 1 under an absolute continuous change of the probability measure, we can rule out finite-time blowup by contradiction. There are two cases: (A) {\\boldsymbol{R}} given by a finite number of Wiener integrals, and (B) otherwise. Ruling out blowup in (A) is straightforward. For (B), a condition based on a limit passage in the Picard iterations is identified for such a contradiction to come out. The whole argument equally holds in {{{R}}}d for any d≥slant 2.

  20. Toric Geometry of the Regular Convex Polyhedra

    Directory of Open Access Journals (Sweden)

    Fiammetta Battaglia

    2017-01-01

    Full Text Available We describe symplectic and complex toric spaces associated with the five regular convex polyhedra. The regular tetrahedron and the cube are rational and simple, the regular octahedron is not simple, the regular dodecahedron is not rational, and the regular icosahedron is neither simple nor rational. We remark that the last two cases cannot be treated via standard toric geometry.

  1. Short-Term Space-Use Patterns of Translocated Mojave Desert Tortoise in Southern California.

    Directory of Open Access Journals (Sweden)

    Matthew L Farnsworth

    Full Text Available Increasingly, renewable energy comprises a larger share of global energy production. Across the western United States, public lands are being developed to support renewable energy production. Where there are conflicts with threatened or endangered species, translocation can be used in an attempt to mitigate negative effects. For the threatened Mojave desert tortoise (Gopherus agassizii, we sought to compare habitat- and space-use patterns between short-distance translocated, resident, and control groups. We tested for differences in home range size based on utilization distributions and used linear mixed-effects models to compare space-use intensity, while controlling for demographic and environmental variables. In addition, we examined mean movement distances as well as home range overlap between years and for male and female tortoises in each study group. During the first active season post-translocation, home range size was greater and space-use intensity was lower for translocated tortoises than resident and control groups. These patterns were not present in the second season. In both years, there was no difference in home range size or space-use intensity between control and resident groups. Translocation typically resulted in one active season of questing followed by a second active season characterized by space-use patterns that were indistinguishable from control tortoises. Across both years, the number of times a tortoise was found in a burrow was positively related to greater space-use intensity. Minimizing the time required for translocated tortoises to exhibit patterns similar to non-translocated individuals may have strong implications for conservation by reducing exposure to adverse environmental conditions and predation. With ongoing development, our results can be used to guide future efforts aimed at understanding how translocation strategies influence patterns of animal space use.

  2. Short-term forecasting of thunderstorms at Kennedy Space Center, based on the surface wind field

    Science.gov (United States)

    Watson, Andrew I.; Lopez, Raul E.; Holle, Ronald L.; Daugherty, John R.; Ortiz, Robert

    1989-01-01

    Techniques incorporating wind convergence that can be used for the short-term prediction of thunderstorm development are described. With these techniques, the convergence signal is sensed by the wind network array 15 to 90 min before actual storm development. Particular attention is given to the convergence cell technique (which has been applied at the Kennedy Space Center) where each convective region is analyzed independently. It is noted that, while the monitoring of areal and cellular convergence can be used to help locate the seeds of developing thunderstorms and pinpoint the lightning threat areas, this forecasting aid cannot be used in isolation.

  3. Interaction of relativistic short proton bunches with space charge limited electron clouds

    Directory of Open Access Journals (Sweden)

    F. B. Petrov

    2014-12-01

    Full Text Available The electron cloud buildup and interaction with a train of relativistic, short proton bunches is studied using particle-in-cell codes. The simulation models describe the electron generation at the beam pipe wall as well as the wakefield behind the bunches. The study focuses on the space charge limited (saturated cloud profile between the bunches and on the incoherent tune spread caused by the interaction of the saturated cloud with individual bunches. Analytical expressions describing the pinch of a saturated electron cloud are derived and compared to simulation results.

  4. Regular polytopes

    CERN Document Server

    Coxeter, H S M

    1973-01-01

    Polytopes are geometrical figures bounded by portions of lines, planes, or hyperplanes. In plane (two dimensional) geometry, they are known as polygons and comprise such figures as triangles, squares, pentagons, etc. In solid (three dimensional) geometry they are known as polyhedra and include such figures as tetrahedra (a type of pyramid), cubes, icosahedra, and many more; the possibilities, in fact, are infinite! H. S. M. Coxeter's book is the foremost book available on regular polyhedra, incorporating not only the ancient Greek work on the subject, but also the vast amount of information

  5. Immune System Dysregulation, Viral Reactivation and Stress During Short-Duration Space Flight

    Science.gov (United States)

    Crucian, Brian; Mehta, Satish; Stowe, Raymond; Uchakin, Peter; Quiriarte, Heather; Pierson, Duane; Sams, Clarence

    2010-01-01

    This slide presentation reviews a study that was conducted to ascertain if the immune system dysregulation, viral reactivation and stress from short duration space flight were a result of the stress of landing and readjustment to gravity. The objectives of the study were to replace several recent immune studies with one comprehensive study that will include in-flight sampling; address lack of in-flight data: (i.e., determine the in-flight status of immunity, physiological stress, viral immunity/reactivation); determine the clinical risk related to immune dysregulation for exploration class spaceflight; and determine the appropriate monitoring strategy for spaceflight-associated immune dysfunction, that could be used for the evaluation of countermeasures.

  6. How regularity representations of short sound patterns that are based on relative or absolute pitch information establish over time: An EEG study

    Science.gov (United States)

    Schröger, Erich; Grimm, Sabine

    2017-01-01

    The recognition of sound patterns in speech or music (e.g., a melody that is played in different keys) requires knowledge about pitch relations between successive sounds. We investigated the formation of regularity representations for sound patterns in an event-related potential (ERP) study. A pattern, which consisted of six concatenated 50 ms tone segments differing in fundamental frequency, was presented 1, 2, 3, 6, or 12 times and then replaced by another pattern by randomly changing the pitch of the tonal segments (roving standard paradigm). In an absolute repetition condition, patterns were repeated identically, whereas in a transposed condition, only the pitch relations of the tonal segments of the patterns were repeated, while the entire patterns were shifted up or down in pitch. During ERP measurement participants were not informed about the pattern repetition rule, but were instructed to discriminate rarely occurring targets of lower or higher sound intensity. EPRs for pattern changes (mismatch negativity, MMN; and P3a) and for pattern repetitions (repetition positivity, RP) revealed that the auditory system is able to rapidly extract regularities from unfamiliar complex sound patterns even when absolute pitch varies. Yet, enhanced RP and P3a amplitudes, and improved behavioral performance measured in a post-hoc test, in the absolute as compared with the transposed condition suggest that it is more difficult to encode patterns without absolute pitch information. This is explained by dissociable processing of standards and deviants as well as a back propagation mechanism to early sensory processing stages, which is effective after less repetitions of a standard stimulus for absolute pitch. PMID:28472146

  7. How regularity representations of short sound patterns that are based on relative or absolute pitch information establish over time: An EEG study.

    Science.gov (United States)

    Bader, Maria; Schröger, Erich; Grimm, Sabine

    2017-01-01

    The recognition of sound patterns in speech or music (e.g., a melody that is played in different keys) requires knowledge about pitch relations between successive sounds. We investigated the formation of regularity representations for sound patterns in an event-related potential (ERP) study. A pattern, which consisted of six concatenated 50 ms tone segments differing in fundamental frequency, was presented 1, 2, 3, 6, or 12 times and then replaced by another pattern by randomly changing the pitch of the tonal segments (roving standard paradigm). In an absolute repetition condition, patterns were repeated identically, whereas in a transposed condition, only the pitch relations of the tonal segments of the patterns were repeated, while the entire patterns were shifted up or down in pitch. During ERP measurement participants were not informed about the pattern repetition rule, but were instructed to discriminate rarely occurring targets of lower or higher sound intensity. EPRs for pattern changes (mismatch negativity, MMN; and P3a) and for pattern repetitions (repetition positivity, RP) revealed that the auditory system is able to rapidly extract regularities from unfamiliar complex sound patterns even when absolute pitch varies. Yet, enhanced RP and P3a amplitudes, and improved behavioral performance measured in a post-hoc test, in the absolute as compared with the transposed condition suggest that it is more difficult to encode patterns without absolute pitch information. This is explained by dissociable processing of standards and deviants as well as a back propagation mechanism to early sensory processing stages, which is effective after less repetitions of a standard stimulus for absolute pitch.

  8. How regularity representations of short sound patterns that are based on relative or absolute pitch information establish over time: An EEG study.

    Directory of Open Access Journals (Sweden)

    Maria Bader

    Full Text Available The recognition of sound patterns in speech or music (e.g., a melody that is played in different keys requires knowledge about pitch relations between successive sounds. We investigated the formation of regularity representations for sound patterns in an event-related potential (ERP study. A pattern, which consisted of six concatenated 50 ms tone segments differing in fundamental frequency, was presented 1, 2, 3, 6, or 12 times and then replaced by another pattern by randomly changing the pitch of the tonal segments (roving standard paradigm. In an absolute repetition condition, patterns were repeated identically, whereas in a transposed condition, only the pitch relations of the tonal segments of the patterns were repeated, while the entire patterns were shifted up or down in pitch. During ERP measurement participants were not informed about the pattern repetition rule, but were instructed to discriminate rarely occurring targets of lower or higher sound intensity. EPRs for pattern changes (mismatch negativity, MMN; and P3a and for pattern repetitions (repetition positivity, RP revealed that the auditory system is able to rapidly extract regularities from unfamiliar complex sound patterns even when absolute pitch varies. Yet, enhanced RP and P3a amplitudes, and improved behavioral performance measured in a post-hoc test, in the absolute as compared with the transposed condition suggest that it is more difficult to encode patterns without absolute pitch information. This is explained by dissociable processing of standards and deviants as well as a back propagation mechanism to early sensory processing stages, which is effective after less repetitions of a standard stimulus for absolute pitch.

  9. Changes in Jump-Down Performance After Space Flight: Short- and Long-Term Adaptation

    Science.gov (United States)

    Kofman, I. S.; Reschke, M. F.; Cerisano, J. M.; Fisher, E. A.; Lawrence, E. L.; Peters, B. T.; Bloomberg, J. J.

    2010-01-01

    INTRODUCTION Successful jump performance requires functional coordination of visual, vestibular, and somatosensory systems, which are affected by prolonged exposure to microgravity. Astronauts returning from space flight exhibit impaired ability to coordinate effective landing strategies when jumping from a platform to the ground. This study compares the jump strategies used by astronauts before and after flight, the changes to those strategies within a test session, and the recoveries in jump-down performance parameters across several postflight test sessions. These data were obtained as part of an ongoing interdisciplinary study (Functional Task Test, FTT) designed to evaluate both astronaut postflight functional performance and related physiological changes. METHODS Six astronauts from short-duration (Shuttle) and three from long-duration (International Space Station) flights performed 3 two-footed jumps from a platform 30 cm high. A force plate measured the ground reaction forces and center-of-pressure displacement from the landings. Muscle activation data were collected from the medial gastrocnemius and anterior tibialis of both legs using surface electromyography electrodes. Two load cells in the platform measured the load exerted by each foot during the takeoff phase of the jump. Data were collected in 2 preflight sessions, on landing day (Shuttle only), and 1, 6, and 30 days after flight. RESULTS AND CONCLUSION Many of the astronauts tested were unable to maintain balance on their first postflight jump landing but recovered by the third jump, showing a learning progression in which the performance improvement could be attributed to adjustments of strategy on takeoff, landing, or both. Takeoff strategy changes were evident in air time (time between takeoff and landing), which was significantly reduced after flight, and also in increased asymmetry in foot latencies on takeoff. Landing modifications were seen in changes in ground reaction force curves. The

  10. Recursively-regular subdivisions and applications

    Directory of Open Access Journals (Sweden)

    Rafel Jaume

    2016-05-01

    Full Text Available We generalize regular subdivisions (polyhedral complexes resulting from the projection of the lower faces of a polyhedron introducing the class of recursively-regular subdivisions. Informally speaking, a recursively-regular subdivision is a subdivision that can be obtained by splitting some faces of a regular subdivision by other regular subdivisions (and continue recursively. We also define the finest regular coarsening and the regularity tree of a polyhedral complex. We prove that recursively-regular subdivisions are not necessarily connected by flips and that they are acyclic with respect to the in-front relation. We show that the finest regular coarsening of a subdivision can be efficiently computed, and that whether a subdivision is recursively regular can be efficiently decided. As an application, we also extend a theorem known since 1981 on illuminating space by cones and present connections of recursive regularity to tensegrity theory and graph-embedding problems.     

  11. UNFOLDED REGULAR AND SEMI-REGULAR POLYHEDRA

    Directory of Open Access Journals (Sweden)

    IONIŢĂ Elena

    2015-06-01

    Full Text Available This paper proposes a presentation unfolding regular and semi-regular polyhedra. Regular polyhedra are convex polyhedra whose faces are regular and equal polygons, with the same number of sides, and whose polyhedral angles are also regular and equal. Semi-regular polyhedra are convex polyhedra with regular polygon faces, several types and equal solid angles of the same type. A net of a polyhedron is a collection of edges in the plane which are the unfolded edges of the solid. Modeling and unfolding Platonic and Arhimediene polyhedra will be using 3dsMAX program. This paper is intended as an example of descriptive geometry applications.

  12. Comparative Analysis of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) of Streptococcus thermophilus St-I and its Bacteriophage-Insensitive Mutants (BIM) Derivatives.

    Science.gov (United States)

    Li, Wan; Bian, Xin; Evivie, Smith Etareri; Huo, Gui-Cheng

    2016-09-01

    The CRISPR-Cas (CRISPR together with CRISPR-associated proteins) modules are the adaptive immune system, acting as an adaptive and heritable immune system in bacteria and archaea. CRISPR-based immunity acts by integrating short virus sequences in the cell's CRISPR locus, allowing the cell to remember, recognize, and clear infections. In this study, the homology of CRISPRs sequence in BIMs (bacteriophage-insensitive mutants) of Streptococcus thermophilus St-I were analyzed. Secondary structures of the repeats and the PAMs (protospacer-associated motif) of each CRISPR locus were also predicted. Results showed that CRISPR1 has 27 repeat-spacer units, 5 of them had duplicates; CRISPR2 has one repeat-spacer unit; CRISPR3 has 28 repeat-spacer units. Only BIM1 had a new spacer acquisition in CRISPR3, while BIM2 and BIM3 had no new spacers' insertion, thus indicating that while most CRISPR1 were more active than CRISPR3, new spacer acquisition occurred just in CRSPR3 in some situations. These findings will help establish the foundation for the study of CRSPR-Cas systems in lactic acid bacteria.

  13. Regularity of conservative inductive limits

    Directory of Open Access Journals (Sweden)

    Jan Kucera

    1999-01-01

    Full Text Available A sequentially complete inductive limit of Fréchet spaces is regular, see [3]. With a minor modification, this property can be extended to inductive limits of arbitrary locally convex spaces under an additional assumption of conservativeness.

  14. Rael Artel Gallery: Non-Profit Project Space : short tale of an experimental project's space tactics / Kiwa

    Index Scriptorium Estoniae

    Kiwa, pseud., 1975-

    2009-01-01

    Aastatel 2004-2008 Pärnus ja aastatel 2006-2008 Tartus tegutsenud Rael Artel Galeriist, mille looja ja moderaator oli Rael Artel. Galerii tegevus lõppes kunstialbumi "Hotell Pärnu : Rael Arel Gallery : Non Profit Project Space 2004-2008 / kontseptsioon ja toimetamine: Rael Artel" ilmumisega 2009. aastal

  15. A short-term risk–benefit analysis of occasional and regular use of low-dose aspirin in primary prevention of vascular diseases: a nationwide population-based study

    Science.gov (United States)

    Wu, I-Chen; Hsieh, Hui-Min; Wu, Ming-Tsang

    2015-01-01

    Objective To calculate the short-term risk–benefit effect of occasional and regular use of low-dose aspirin (≤100 mg/day) in primary prevention. Study design Two retrospective cohort studies. Setting Taiwan. Participants 63 788 and 24 910 patients of two nationwide population-based studies were examined. Methods Two databases of 1 000 000 patients were randomly sampled from data of Taiwan's National Health Insurance (NHI) for years 1997–2000 (NHI 2000) and 2005 (NHI 2005). In NHI 2000, 63 788 patients 30–95 years of age were found not to have previously been prescribed aspirin before 1 January 2000, but to have first been prescribed low-dose aspirin after that date. They were also found to be at risk of first hospitalisation for any major vascular diseases including haemorrhage (major gastrointestinal haemorrhage or cerebral haemorrhage) and ischaemia (acute myocardial infarction or ischaemic stroke) after their first prescription. We also applied it to NHI 2005, and the number of eligible patients was 24 910. Patients prescribed low-dose aspirin for aspirin for ≥80% of the days were considered to be regular users. Differences in rate of haemorrhage and ischaemia between these users were used to calculate their net clinical risk. Primary outcome Vascular diseases. Results In NHI 2000, the overall unadjusted rates of haemorrhage and ischaemia were 0.09% and 0.21%, respectively, for occasional users and 0.32% and 2.30%, respectively, for regular users. Adjusted net clinical risk of low-dose aspirin use between the two groups was 2.24% (95% CI 2.03% to 2.48%; paspirin might not be better than occasional use for preventing major vascular diseases in primary prevention. Prescribing regular low-dose aspirin for primary prevention should be done with caution. Future studies should explore the risk–benefit effect of long-term low-dose aspirin use in primary prevention. PMID:25575876

  16. Phenotypic, genomic, transcriptomic and proteomic changes in Bacillus cereus after a short-term space flight

    Science.gov (United States)

    Su, Longxiang; Zhou, Lisha; Liu, Jinwen; Cen, Zhong; Wu, Chunyan; Wang, Tong; Zhou, Tao; Chang, De; Guo, Yinghua; Fang, Xiangqun; Wang, Junfeng; Li, Tianzhi; Yin, Sanjun; Dai, Wenkui; Zhou, Yuping; Zhao, Jiao; Fang, Chengxiang; Yang, Ruifu; Liu, Changting

    2014-01-01

    The environment in space could affect microorganisms by changing a variety of features, including proliferation rate, cell physiology, cell metabolism, biofilm production, virulence, and drug resistance. However, the relevant mechanisms remain unclear. To explore the effect of a space environment on Bacillus cereus, a strain of B. cereus was sent to space for 398 h by ShenZhou VIII from November 1, 2011 to November 17, 2011. A ground simulation with similar temperature conditions was simultaneously performed as a control. After the flight, the flight and control strains were further analyzed using phenotypic, genomic, transcriptomic and proteomic techniques to explore the divergence of B. cereus in a space environment. The flight strains exhibited a significantly slower growth rate, a significantly higher amikacin resistance level, and changes in metabolism relative to the ground control strain. After the space flight, three polymorphic loci were found in the flight strains LCT-BC25 and LCT-BC235. A combined transcriptome and proteome analysis was performed, and this analysis revealed that the flight strains had changes in genes/proteins relevant to metabolism. In addition, certain genes/proteins that are relevant to structural function, gene expression modification and translation, and virulence were also altered. Our study represents the first documented analysis of the phenotypic, genomic, transcriptomic, and proteomic changes that occur in B. cereus during space flight, and our results could be beneficial to the field of space microbiology.

  17. Network model and short circuit program for the Kennedy Space Center electric power distribution system

    Science.gov (United States)

    1976-01-01

    Assumptions made and techniques used in modeling the power network to the 480 volt level are discussed. Basic computational techniques used in the short circuit program are described along with a flow diagram of the program and operational procedures. Procedures for incorporating network changes are included in this user's manual.

  18. Evaluation of NASA Foodbars as a Standard Diet for Use in Short-Term Rodent Space Flight Studies

    Science.gov (United States)

    Tou, Janet; Grindeland, Richard; Barrett, Joyce; Dalton, Bonnie; Mandel, Adrian; Wade, Charles

    2003-01-01

    A standard rodent diet for space flight must meet the unique conditions imposed by the space environment and must be nutritionally adequate since diet can influence the outcome of experiments. This paper evaluates the use of National Aeronautics and Space Administration (NASA) developed Foodbars as a standard space flight diet for rats. The Foodbar's semi-purified formulation permits criteria such as nutrient consistency, high nutrient bioavailability and flexibility of formulation to be met. Extrusion of the semi-purified diet produces Foodbars with the proper texture and a non-crumbing solid form for use in space. Treatment of Foodbar with 0.1% potassium sorbate prevents mold growth. Irradiation (15-25 kGy) prevents bacterial growth and in combination with sorbate-treatment provides added protection against mold for shelf-stability. However, during the development process, nutrient analyses indicated that extrusion and irradiation produced nutrient losses. Nutrients were adjusted accordingly to compensate for processing losses. Nutrient analysis of Foodbars continues to be performed routinely to monitor nutrient levels. It is important that the standard rodent diet provide nutrients that will prevent deficiency but also avoid excess that may mask physiological changes produced by space flight. All vitamins levels in the Foodbars, except for vitamin K conformed to or exceeded the current NRC (1995) recommendations. All indispensable amino acids in Foodbar conformed to or exceeded the NRC nutrient recommendation for mice growth and rat maintenance. However, some indispensable amino acids were slightly below recommendations for rat reproduction/growth. Short-term (18-20 d) animal feeding studies indicated that Foodbars were palatable, supported growth and maintained health in rats. Results indicated that NASA rodent Foodbars meet both the physical and nutritional criteria required to support rodents in the space environment and thus, may be used successfully as a

  19. Strength of tensed and compressed concrete segments in crack spacing under short-term dynamic load

    Directory of Open Access Journals (Sweden)

    Galyautdinov Zaur

    2018-01-01

    Full Text Available Formation of model describing dynamic straining of reinforced concrete requires taking into account the basic aspects influencing the stress-strain state of structures. Strength of concrete segments in crack spacing is one of the crucial aspects that affect general strain behavior of reinforced concrete. Experimental results demonstrate significant change in strength of tensed and compressed concrete segments in crack spacing both under static and under dynamic loading. In this case, strength depends on tensile strain level and the slope angle of rebars towards the cracks direction. Existing theoretical and experimental studies estimate strength of concrete segments in crack spacing under static loading. The present work presents results of experimental and theoretical studies of dynamic strength of plates between cracks subjected to compression-tension. Experimental data was analyzed statistically; the dependences were suggested to describe dynamic strength of concrete segments depending on tensile strain level and slope angle of rebars to cracks direction.

  20. Methods for Free-Space Ultra-Short Solitary EMP Measurement

    Directory of Open Access Journals (Sweden)

    Eva Kadlecova

    2006-01-01

    Full Text Available There are some suitable methods for ultra-short solitary electromagnetic pulses (EMP measurement. The EMPs are generated by high power microwave generators. The characteristic of EMPs is high power level (Pmax = 250 MW and very short time duration (tp Î ns. Special requirements for measurement methods are placed because of the specific EMPs properties.Two suitable methods for this application are presented in the paper. The first – calorimetric method, utilizes the thermal impacts of microwave absorption. The second method presented – magneto-optic method, use the Faraday’s magneto-optic effect as a sensor principle. It was realized combined calorimetric sensor and there were made some experimental EMP measurements with good results. The sensor utilizing magneto-optic method is in development.

  1. Lightweight Word Spacing Model Based on Short Text Messages for Social Networking in Smart Homes

    OpenAIRE

    Yeongkil Song; Harksoo Kim

    2014-01-01

    In smart homes, information appliances interact with residents via social network services. To capture residents’ intentions, the information appliances should analyze short text messages entered typically through small mobile devices. However, most information appliances have hardware constraints such as small memory, limited battery capacity, and restricted processing power. Therefore, it is not easy to embed intelligent applications based on natural language processing (NLP) techniques, wh...

  2. The Clustered, Regularly Interspaced, Short Palindromic Repeats-associated Endonuclease 9 (CRISPR/Cas9)-created MDM2 T309G Mutation Enhances Vitreous-induced Expression of MDM2 and Proliferation and Survival of Cells.

    Science.gov (United States)

    Duan, Yajian; Ma, Gaoen; Huang, Xionggao; D'Amore, Patricia A; Zhang, Feng; Lei, Hetian

    2016-07-29

    The G309 allele of SNPs in the mouse double minute (MDM2) promoter locus is associated with a higher risk of cancer and proliferative vitreoretinopathy (PVR), but whether SNP G309 contributes to the pathogenesis of PVR is to date unknown. The clustered regularly interspaced short palindromic repeats (CRISPR)-associated endonuclease (Cas) 9 from Streptococcus pyogenes (SpCas9) can be harnessed to manipulate a single or multiple nucleotides in mammalian cells. Here we delivered SpCas9 and guide RNAs using dual adeno-associated virus-derived vectors to target the MDM2 genomic locus together with a homologous repair template for creating the mutation of MDM2 T309G in human primary retinal pigment epithelial (hPRPE) cells whose genotype is MDM2 T309T. The next-generation sequencing results indicated that there was 42.51% MDM2 G309 in the edited hPRPE cells using adeno-associated viral CRISPR/Cas9. Our data showed that vitreous induced an increase in MDM2 and subsequent attenuation of p53 expression in MDM2 T309G hPRPE cells. Furthermore, our experimental results demonstrated that MDM2 T309G in hPRPE cells enhanced vitreous-induced cell proliferation and survival, suggesting that this SNP contributes to the pathogenesis of PVR. © 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

  3. The Clustered, Regularly Interspaced, Short Palindromic Repeats-associated Endonuclease 9 (CRISPR/Cas9)-created MDM2 T309G Mutation Enhances Vitreous-induced Expression of MDM2 and Proliferation and Survival of Cells*

    Science.gov (United States)

    Duan, Yajian; Ma, Gaoen; Huang, Xionggao; D'Amore, Patricia A.; Zhang, Feng; Lei, Hetian

    2016-01-01

    The G309 allele of SNPs in the mouse double minute (MDM2) promoter locus is associated with a higher risk of cancer and proliferative vitreoretinopathy (PVR), but whether SNP G309 contributes to the pathogenesis of PVR is to date unknown. The clustered regularly interspaced short palindromic repeats (CRISPR)-associated endonuclease (Cas) 9 from Streptococcus pyogenes (SpCas9) can be harnessed to manipulate a single or multiple nucleotides in mammalian cells. Here we delivered SpCas9 and guide RNAs using dual adeno-associated virus-derived vectors to target the MDM2 genomic locus together with a homologous repair template for creating the mutation of MDM2 T309G in human primary retinal pigment epithelial (hPRPE) cells whose genotype is MDM2 T309T. The next-generation sequencing results indicated that there was 42.51% MDM2 G309 in the edited hPRPE cells using adeno-associated viral CRISPR/Cas9. Our data showed that vitreous induced an increase in MDM2 and subsequent attenuation of p53 expression in MDM2 T309G hPRPE cells. Furthermore, our experimental results demonstrated that MDM2 T309G in hPRPE cells enhanced vitreous-induced cell proliferation and survival, suggesting that this SNP contributes to the pathogenesis of PVR. PMID:27246850

  4. Short-Time Gibbsianness for Infinite-Dimensional Diffusions with Space-Time Interaction

    NARCIS (Netherlands)

    Redig, Frank; Roelly, Sylvie; Ruszel, Wioletta

    We consider a class of infinite-dimensional diffusions where the interaction between the components has a finite extent both in space and time. We start the system from a Gibbs measure with a finite-range uniformly bounded interaction. Under suitable conditions on the drift, we prove that there

  5. Dynamics of short eccentric plain seals with high axial Reynolds number. [for Space Shuttle engine hydrogen fuel turbopump

    Science.gov (United States)

    Allaire, P. E.; Lee, C. C.; Gunter, E. J.

    1978-01-01

    Plain seals with high axial flow rates produce large stiffness and damping coefficients that can help stabilize high-speed rotating machinery. When the shaft is eccentric in the seal, a Bernoulli effect low-pressure region occurs on the large-clearance side of the shaft. A fluid-restoring force tends to center the shaft and reduce vibrations. This work extends the previous theory for short plain centered seals to large eccentricities using a perturbation analysis. Surface roughness effects are also included. An analysis of seals used in the Space Shuttle main engine hydrogen fuel turbopump indicates the desirability of plain seals over the labyrinth type. Experimental results confirm this.

  6. Automating InDesign with Regular Expressions

    CERN Document Server

    Kahrel, Peter

    2006-01-01

    If you need to make automated changes to InDesign documents beyond what basic search and replace can handle, you need regular expressions, and a bit of scripting to make them work. This Short Cut explains both how to write regular expressions, so you can find and replace the right things, and how to use them in InDesign specifically.

  7. A preliminary evaluation of short-term thunderstorm forecasting using surface winds at Kennedy Space Center

    Science.gov (United States)

    Watson, Andrew I.; Holle, Ronald L.; Lopez, Raul E.; Nicholson, James R.

    1990-01-01

    In 1987 NASA expanded its surface wind network onto the mainland west of Kennedy Space Center, increasing the network area from nearly 800 sq km to over 1600 sq km. Here, the results of this expansion are reported using three years of wind and lightning information collected during June, July, August, and September of 1987, 1988, and 1989. The divergence-lightning relationships and the importance of wind direction are addressed, and the verification is summarized.

  8. Word regularity affects orthographic learning.

    Science.gov (United States)

    Wang, Hua-Chen; Castles, Anne; Nickels, Lyndsey

    2012-01-01

    Share's self-teaching hypothesis proposes that orthographic representations are acquired via phonological decoding. A key, yet untested, prediction of this theory is that there should be an effect of word regularity on the number and quality of word-specific orthographic representations that children acquire. Thirty-four Grade 2 children were exposed to the sound and meaning of eight novel words and were then presented with those words in written form in short stories. Half the words were assigned regular pronunciations and half irregular pronunciations. Lexical decision and spelling tasks conducted 10 days later revealed that the children's orthographic representations of the regular words appeared to be stronger and more extensive than those of the irregular words.

  9. Efficient Computation of Multiscale Entropy over Short Biomedical Time Series Based on Linear State-Space Models

    Directory of Open Access Journals (Sweden)

    Luca Faes

    2017-01-01

    Full Text Available The most common approach to assess the dynamical complexity of a time series across multiple temporal scales makes use of the multiscale entropy (MSE and refined MSE (RMSE measures. In spite of their popularity, MSE and RMSE lack an analytical framework allowing their calculation for known dynamic processes and cannot be reliably computed over short time series. To overcome these limitations, we propose a method to assess RMSE for autoregressive (AR stochastic processes. The method makes use of linear state-space (SS models to provide the multiscale parametric representation of an AR process observed at different time scales and exploits the SS parameters to quantify analytically the complexity of the process. The resulting linear MSE (LMSE measure is first tested in simulations, both theoretically to relate the multiscale complexity of AR processes to their dynamical properties and over short process realizations to assess its computational reliability in comparison with RMSE. Then, it is applied to the time series of heart period, arterial pressure, and respiration measured for healthy subjects monitored in resting conditions and during physiological stress. This application to short-term cardiovascular variability documents that LMSE can describe better than RMSE the activity of physiological mechanisms producing biological oscillations at different temporal scales.

  10. A short essay on quantum black holes and underlying noncommutative quantized space-time

    Science.gov (United States)

    Tanaka, Sho

    2017-01-01

    We emphasize the importance of noncommutative geometry or Lorenz-covariant quantized space-time towards the ultimate theory of quantum gravity and Planck scale physics. We focus our attention on the statistical and substantial understanding of the Bekenstein-Hawking area-entropy law of black holes in terms of the kinematical holographic relation (KHR). KHR manifestly holds in Yang’s quantized space-time as the result of kinematical reduction of spatial degrees of freedom caused by its own nature of noncommutative geometry, and plays an important role in our approach without any recourse to the familiar hypothesis, so-called holographic principle. In the present paper, we find a unified form of KHR applicable to the whole region ranging from macroscopic to microscopic scales in spatial dimension d  =  3. We notice a possibility of nontrivial modification of area-entropy law of black holes which becomes most remarkable in the extremely microscopic system close to Planck scale.

  11. Correction of Hirschsprung-Associated Mutations in Human Induced Pluripotent Stem Cells Via Clustered Regularly Interspaced Short Palindromic Repeats/Cas9, Restores Neural Crest Cell Function.

    Science.gov (United States)

    Lai, Frank Pui-Ling; Lau, Sin-Ting; Wong, John Kwong-Leong; Gui, Hongsheng; Wang, Reeson Xu; Zhou, Tingwen; Lai, Wing Hon; Tse, Hung-Fat; Tam, Paul Kwong-Hang; Garcia-Barcelo, Maria-Mercedes; Ngan, Elly Sau-Wai

    2017-07-01

    Hirschsprung disease is caused by failure of enteric neural crest cells (ENCCs) to fully colonize the bowel, leading to bowel obstruction and megacolon. Heterozygous mutations in the coding region of the RET gene cause a severe form of Hirschsprung disease (total colonic aganglionosis). However, 80% of HSCR patients have short-segment Hirschsprung disease (S-HSCR), which has not been associated with genetic factors. We sought to identify mutations associated with S-HSCR, and used the clustered regularly interspaced short palindromic repeats (CRISPR)/Cas9 gene editing system to determine how mutations affect ENCC function. We created induced pluripotent stem cell (iPSC) lines from 1 patient with total colonic aganglionosis (with the G731del mutation in RET) and from 2 patients with S-HSCR (without a RET mutation), as well as RET +/- and RET -/- iPSCs. IMR90-iPSC cells were used as the control cell line. Migration and differentiation capacities of iPSC-derived ENCCs were analyzed in differentiation and migration assays. We searched for mutation(s) associated with S-HSCR by combining genetic and transcriptome data from patient blood- and iPSC-derived ENCCs, respectively. Mutations in the iPSCs were corrected using the CRISPR/Cas9 system. ENCCs derived from all iPSC lines, but not control iPSCs, had defects in migration and neuronal lineage differentiation. RET mutations were associated with differentiation and migration defects of ENCCs in vitro. Genetic and transcriptome analyses associated a mutation in the vinculin gene (VCL M209L) with S-HSCR. CRISPR/Cas9 correction of the RET G731del and VCL M209L mutations in iPSCs restored the differentiation and migration capacities of ENCCs. We identified mutations in VCL associated with S-HSCR. Correction of this mutation in iPSC using CRISPR/Cas9 editing, as well as the RET G731del mutation that causes Hirschsprung disease with total colonic aganglionosis, restored ENCC function. Our study demonstrates how human iPSCs can

  12. A Complex of Cas Proteins 5, 6, and 7 Is Required for the Biogenesis and Stability of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR)-derived RNAs (crRNAs) in Haloferax volcanii*

    Science.gov (United States)

    Brendel, Jutta; Stoll, Britta; Lange, Sita J.; Sharma, Kundan; Lenz, Christof; Stachler, Aris-Edda; Maier, Lisa-Katharina; Richter, Hagen; Nickel, Lisa; Schmitz, Ruth A.; Randau, Lennart; Allers, Thorsten; Urlaub, Henning; Backofen, Rolf; Marchfelder, Anita

    2014-01-01

    The clustered regularly interspaced short palindromic repeats/CRISPR-associated (CRISPR-Cas) system is a prokaryotic defense mechanism against foreign genetic elements. A plethora of CRISPR-Cas versions exist, with more than 40 different Cas protein families and several different molecular approaches to fight the invading DNA. One of the key players in the system is the CRISPR-derived RNA (crRNA), which directs the invader-degrading Cas protein complex to the invader. The CRISPR-Cas types I and III use the Cas6 protein to generate mature crRNAs. Here, we show that the Cas6 protein is necessary for crRNA production but that additional Cas proteins that form a CRISPR-associated complex for antiviral defense (Cascade)-like complex are needed for crRNA stability in the CRISPR-Cas type I-B system in Haloferax volcanii in vivo. Deletion of the cas6 gene results in the loss of mature crRNAs and interference. However, cells that have the complete cas gene cluster (cas1–8b) removed and are transformed with the cas6 gene are not able to produce and stably maintain mature crRNAs. crRNA production and stability is rescued only if cas5, -6, and -7 are present. Mutational analysis of the cas6 gene reveals three amino acids (His-41, Gly-256, and Gly-258) that are essential for pre-crRNA cleavage, whereas the mutation of two amino acids (Ser-115 and Ser-224) leads to an increase of crRNA amounts. This is the first systematic in vivo analysis of Cas6 protein variants. In addition, we show that the H. volcanii I-B system contains a Cascade-like complex with a Cas7, Cas5, and Cas6 core that protects the crRNA. PMID:24459147

  13. A complex of Cas proteins 5, 6, and 7 is required for the biogenesis and stability of clustered regularly interspaced short palindromic repeats (crispr)-derived rnas (crrnas) in Haloferax volcanii.

    Science.gov (United States)

    Brendel, Jutta; Stoll, Britta; Lange, Sita J; Sharma, Kundan; Lenz, Christof; Stachler, Aris-Edda; Maier, Lisa-Katharina; Richter, Hagen; Nickel, Lisa; Schmitz, Ruth A; Randau, Lennart; Allers, Thorsten; Urlaub, Henning; Backofen, Rolf; Marchfelder, Anita

    2014-03-07

    The clustered regularly interspaced short palindromic repeats/CRISPR-associated (CRISPR-Cas) system is a prokaryotic defense mechanism against foreign genetic elements. A plethora of CRISPR-Cas versions exist, with more than 40 different Cas protein families and several different molecular approaches to fight the invading DNA. One of the key players in the system is the CRISPR-derived RNA (crRNA), which directs the invader-degrading Cas protein complex to the invader. The CRISPR-Cas types I and III use the Cas6 protein to generate mature crRNAs. Here, we show that the Cas6 protein is necessary for crRNA production but that additional Cas proteins that form a CRISPR-associated complex for antiviral defense (Cascade)-like complex are needed for crRNA stability in the CRISPR-Cas type I-B system in Haloferax volcanii in vivo. Deletion of the cas6 gene results in the loss of mature crRNAs and interference. However, cells that have the complete cas gene cluster (cas1-8b) removed and are transformed with the cas6 gene are not able to produce and stably maintain mature crRNAs. crRNA production and stability is rescued only if cas5, -6, and -7 are present. Mutational analysis of the cas6 gene reveals three amino acids (His-41, Gly-256, and Gly-258) that are essential for pre-crRNA cleavage, whereas the mutation of two amino acids (Ser-115 and Ser-224) leads to an increase of crRNA amounts. This is the first systematic in vivo analysis of Cas6 protein variants. In addition, we show that the H. volcanii I-B system contains a Cascade-like complex with a Cas7, Cas5, and Cas6 core that protects the crRNA.

  14. Energy coupling in short pulse laser solid interactions and its impact for space debris removal.

    Science.gov (United States)

    Neely, David; Allott, Ric; Bingham, Bob; Collier, John; Greenhalgh, Justin; Michaelis, Max; Phillips, Jonathan; Phipps, Claude R; McKenna, Paul

    2014-11-01

    Significant advances have been made over the last decade to improve the performance, efficiency, and contrast of high peak and average power laser systems, driven by their use in a wide variety of fields, from the industrial to the scientific. As the contrast of the lasers has improved, interactions with contrasts of 1012 are now routinely undertaken. At such high contrasts, there is negligible preplasma formation and the ionized surface layer created by subpicosecond-duration pulses typically forms a highly reflective "plasma mirror" capable of reflecting between 70% and 90% of the incident energy. Although such interactions are of significant interest for applications such as harmonic source production and to enable the underlying physics to be studied, their low absorption can limit their usefulness for applications such as space debris removal.

  15. Short-term wind power forecasting: probabilistic and space-time aspects

    DEFF Research Database (Denmark)

    Tastu, Julija

    a statistical model which would improve the quality of state-of-the-art prediction methods by accounting for the fact that forecasts errors made by such locally-optimized forecasting methods propagate in space and in time under the influence of prevailing weather conditions. Subsequently, the extension from......Optimal integration of wind energy into power systems calls for high quality wind power predictions. State-of-the-art forecasting systems typically provide forecasts for every location individually, without taking into account information coming from the neighbouring territories. It is however...... intuitively expected that owing to the inertia in meteorological systems such local approach to power forecasting is sub-optimal. Indeed, errors in meteorological forecasts might translate to fronts of imbalances, i.e. taking the form of a band of forecast errors propagating across entire regions. My research...

  16. Short-term forecasting of lightning based on the surface wind field at Kennedy Space Center

    Science.gov (United States)

    Watson, Andrew I.; Lopez, Raul E.; Ortiz, Robert; Holle, Ronald L.

    1987-01-01

    Cloud-to-ground lightning is related in time and space to surface convergence for 244 days during the summer over a 790 sqkm network. The method uses surface convergence, particularly the average over the area, to identify the potential for new, local thunderstorm growth, and can be used to specify the likely time and location of lightning during the life cycle of the convection. A threshold of 0.0000075/sec change in divergence is used to define a convergence event, and a separation of 30 min between flashes defines a lightning event. Time intervals are found to be on the order of 1 hr from beginning convergence to first flash, and (CH110) 2 hr from beginning convergence to the end of lightning. Major differences between the convergence-lightning relationships based on low-level mean onshore and offshore flow are noted.

  17. Regular Expression Pocket Reference

    CERN Document Server

    Stubblebine, Tony

    2007-01-01

    This handy little book offers programmers a complete overview of the syntax and semantics of regular expressions that are at the heart of every text-processing application. Ideal as a quick reference, Regular Expression Pocket Reference covers the regular expression APIs for Perl 5.8, Ruby (including some upcoming 1.9 features), Java, PHP, .NET and C#, Python, vi, JavaScript, and the PCRE regular expression libraries. This concise and easy-to-use reference puts a very powerful tool for manipulating text and data right at your fingertips. Composed of a mixture of symbols and text, regular exp

  18. Protostellar Outflows Mapped with ALMA and Techniques to Include Short Spacings

    Science.gov (United States)

    Plunkett, Adele

    2018-01-01

    Protostellar outflows are early signs of star formation, yet in cluster environments - common sites of star formation - their role and interaction with surrounding gas are complicated. Protostellar outflows are interesting and complex because they connect protostars (scales 10s au) to the surrounding gas environment (few pc), and their morphology constrains launching and/or accretion modes. A complete outflow study must use observing methods that recover several orders of magnitude of spatial scales, ideally with sub-arcsecond resolution and mapping over a few parsecs. ALMA provides high-resolution observations of outflows, and in some cases outflows have been mapped in clusters. Combining with observations using the Total Power array is possible, but challenging, and a large single dish telescope providing more overlap in uv space is advantageous. In this presentation I show protostellar outflows observed with ALMA using 12m, 7m, and To tal Power arrays. With a new CASA tool TP2VIS we create total power ``visibility'' data and perform joint imaging and deconvolution of interferometry and single dish data. TP2VIS will ultimately provide synergy between ALMA and AtLAST data.

  19. Bone loss during long term space flight is prevented by the application of a short term impulsive mechanical stimulus

    Science.gov (United States)

    Goodship, A. E.; Cunningham, J. L.; Oganov, V.; Darling, J.; Miles, A. W.; Owen, G. W.

    In long term space flight, the mechanical forces applied to the skeleton are substantially reduced and are altered in character. This reduced skeletal loading results in a reduction in bone mass. Exercise techmques currently used in space can maintain muscle mass but the mechanical stimulus provided by this exercise does not prevent bone loss. By applying an external impulsive load for a short period each day, which is intended to mimic the heel strike transient, to the lower limb of an astronaut during a long term space flight (5 months), this study tests the hypothesis that the bone cells can be activated by an appropriate external mechanical stimulus to maintain bone mass throughout prolonged periods of weightlessness. A mechanical loading device was developed to produce a loading of the os-calcis similar to that observed during the heel strike transient. The device is activated by the astronaut to provide a transient load to the heel of one leg whilst providing an equivalent exercising load to the other leg. During the EUROMIR95 mission on the MIR space station, an astronaut used this device for a short period daily throughout the duration of the mission. Pre- and post-flight measurements of bone mineral density (BMD) of the os-calcis and femoral neck of the astronaut were made to determine the efficacy of the device in preventing loss of bone mineral during the mission. On the os-calcis which received the mechanical stimulus, BMD was maintained throughout the period of the flight, while it was reduced by up to 7% on the os-calcis which received no stimulus. Post-flight, BMD in both the stimulated and non-stimulated os-calcis reduces, the extent of this reduction however is less in the stimulated os-calcis. For the femoral neck, the mechanical Stimulation does not produce a positive effect. On the os-calcis which received the mechanical stimulus, BMD was maintained throughout the period of the flight, while it was reduced by up to 7% on the os-calcis which

  20. Physical model of dimensional regularization

    Energy Technology Data Exchange (ETDEWEB)

    Schonfeld, Jonathan F.

    2016-12-15

    We explicitly construct fractals of dimension 4-ε on which dimensional regularization approximates scalar-field-only quantum-field theory amplitudes. The construction does not require fractals to be Lorentz-invariant in any sense, and we argue that there probably is no Lorentz-invariant fractal of dimension greater than 2. We derive dimensional regularization's power-law screening first for fractals obtained by removing voids from 3-dimensional Euclidean space. The derivation applies techniques from elementary dielectric theory. Surprisingly, fractal geometry by itself does not guarantee the appropriate power-law behavior; boundary conditions at fractal voids also play an important role. We then extend the derivation to 4-dimensional Minkowski space. We comment on generalization to non-scalar fields, and speculate about implications for quantum gravity. (orig.)

  1. Comprehensive Astronaut Immune Assessment Following a Short-Duration Space Flight

    Science.gov (United States)

    Crucian, Brian; Stowe, Raymond; Yetman, Deborah; Pierson, Duane; Sams, Clarence

    2006-01-01

    Immune system dysregulation has been demonstrated to occur during spaceflight and has the potential to cause serious health risks to crewmembers participating in exploration class missions. As a part of an ongoing NASA flight experiment assessing viral immunity (DSO-500), a generalized immune assessment was performed on 3 crewmembers who participated in the recent STS-114 Space Shuttle mission. The following assays were performed: (1) comprehensive immunophenotype analysis; (2) T cell function/intracellular cytokine profiles; (4) secreted Th1/Th2 cytokine profiles via cytometric bead array. Immunophenotype analysis included a leukocyte differential, lymphocyte subsets, T cell subsets, cytotoxic/effector CD8+ T cells, memory/naive T cell subsets and constitutively activated T cells. Study timepoints were L-180, L-65, L-10, R+0, R+3 and R+14. Detailed data are presented in the poster text. As expected from a limited number of human subjects, data tended to vary with respect to most parameters. Specific post-flight alterations were as follows (subject number in parentheses): Granulocytosis (2/3), reduced NK cells (3/3), elevated CD4/CD8 ratio (3/3), general CD8+ phenotype shift to a less differentiated phenotype (3/3), elevated levels of memory CD4+ T cells (3/3), loss of L-selectin on T cell subsets (3/3), increased levels of activated T cells (2/3), reduced IL-2 producing T cell subsets (3/3), levels of IFNg producing T cells were unchanged. CD8+ T cell expression of the CD69 activation markers following whole blood stimulation with SEA+SEB were dramatically reduced postflight (3/3), whereas other T cell function assessments were largely unchanged. Cytometric bead array assessment of secreted T cell cytokines was performed, following whole blood stimulation with either CD3/CD28 antibodies or PMA+ionomycin for 48 hours. Specific cytokines assessed were IFNg, TNFa, IL-2, IL-4, IL-5, IL-10. Following CD3/CD28 stimulation, all three crewmembers had a mission

  2. Regularity effect in prospective memory during aging

    Directory of Open Access Journals (Sweden)

    Geoffrey Blondelle

    2016-10-01

    Full Text Available Background: Regularity effect can affect performance in prospective memory (PM, but little is known on the cognitive processes linked to this effect. Moreover, its impacts with regard to aging remain unknown. To our knowledge, this study is the first to examine regularity effect in PM in a lifespan perspective, with a sample of young, intermediate, and older adults. Objective and design: Our study examined the regularity effect in PM in three groups of participants: 28 young adults (18–30, 16 intermediate adults (40–55, and 25 older adults (65–80. The task, adapted from the Virtual Week, was designed to manipulate the regularity of the various activities of daily life that were to be recalled (regular repeated activities vs. irregular non-repeated activities. We examine the role of several cognitive functions including certain dimensions of executive functions (planning, inhibition, shifting, and binding, short-term memory, and retrospective episodic memory to identify those involved in PM, according to regularity and age. Results: A mixed-design ANOVA showed a main effect of task regularity and an interaction between age and regularity: an age-related difference in PM performances was found for irregular activities (older < young, but not for regular activities. All participants recalled more regular activities than irregular ones with no age effect. It appeared that recalling of regular activities only involved planning for both intermediate and older adults, while recalling of irregular ones were linked to planning, inhibition, short-term memory, binding, and retrospective episodic memory. Conclusion: Taken together, our data suggest that planning capacities seem to play a major role in remembering to perform intended actions with advancing age. Furthermore, the age-PM-paradox may be attenuated when the experimental design is adapted by implementing a familiar context through the use of activities of daily living. The clinical

  3. Timing in the absence of supraspinal input III: regularly spaced cutaneous stimulation prevents and reverses the spinal learning deficit produced by peripheral inflammation.

    Science.gov (United States)

    Baumbauer, Kyle M; Grau, James W

    2011-02-01

    In the absence of brain input, spinal systems can adapt to new environmental relations. For example, spinally transected rats given a legshock each time the leg is extended exhibit a progressive increase in flexion duration that minimizes net shock exposure, a simple form of instrumental learning. This capacity for learning is modulated by prior stimulation; both variable shock and inflammation produce a lasting inhibition of learning. An extended exposure to fixed spaced shock has no adverse effect on learning and opposes the consequences of variable shock. The present studies expand on these findings and demonstrate that fixed stimulation ameliorates the impact of peripheral inflammation. Spinally transected rats were administered 900 fixed spaced legshocks before (Experiment 1) or 1,800 legshocks after (Experiment 2) a subcutaneous hindpaw injection of capsaicin. Learning was assessed 24 hr later. Treatment with fixed shock attenuated the capsaicin-induced inhibition of learning. These findings suggest that fixed stimulation promotes adaptive plasticity and may foster recovery after injury. (PsycINFO Database Record (c) 2011 APA, all rights reserved).

  4. Regular simplex refinement by regular simplices

    NARCIS (Netherlands)

    Casado, L.G.; Tóth, B.G.; Hendrix, E.M.T.; García, I.

    2014-01-01

    A naturalway to define branching in Branch-and-Bound for blending problemis to do bisection. The disadvantage of bisectioning is that partition sets are in general irregular. A regular simplex with fixed orientation can be determined by its center and size, allowing storage savings in a Branchand-

  5. Regular expressions cookbook

    CERN Document Server

    Goyvaerts, Jan

    2009-01-01

    This cookbook provides more than 100 recipes to help you crunch data and manipulate text with regular expressions. Every programmer can find uses for regular expressions, but their power doesn't come worry-free. Even seasoned users often suffer from poor performance, false positives, false negatives, or perplexing bugs. Regular Expressions Cookbook offers step-by-step instructions for some of the most common tasks involving this tool, with recipes for C#, Java, JavaScript, Perl, PHP, Python, Ruby, and VB.NET. With this book, you will: Understand the basics of regular expressions through a

  6. Regular expression containment

    DEFF Research Database (Denmark)

    Henglein, Fritz; Nielsen, Lasse

    2011-01-01

    * for Kleene-star, and a general coin- duction rule as the only additional rule. Our axiomatization gives rise to a natural computational inter- pretation of regular expressions as simple types that represent parse trees, and of containment proofs as coercions. This gives the axiom- atization a Curry...... to be undecidable. We discuss application of regular expressions as types to bit coding of strings and hint at other applications to the wide-spread use of regular expressions for substring matching, where classical automata-theoretic techniques are a priori inapplicable. Neither regular expressions as types nor...

  7. A non-stationary stochastic ensemble generator for radar rainfall fields based on the short-space Fourier transform

    Science.gov (United States)

    Nerini, Daniele; Besic, Nikola; Sideris, Ioannis; Germann, Urs; Foresti, Loris

    2017-06-01

    In this paper we present a non-stationary stochastic generator for radar rainfall fields based on the short-space Fourier transform (SSFT). The statistical properties of rainfall fields often exhibit significant spatial heterogeneity due to variability in the involved physical processes and influence of orographic forcing. The traditional approach to simulate stochastic rainfall fields based on the Fourier filtering of white noise is only able to reproduce the global power spectrum and spatial autocorrelation of the precipitation fields. Conceptually similar to wavelet analysis, the SSFT is a simple and effective extension of the Fourier transform developed for space-frequency localisation, which allows for using windows to better capture the local statistical structure of rainfall. The SSFT is used to generate stochastic noise and precipitation fields that replicate the local spatial correlation structure, i.e. anisotropy and correlation range, of the observed radar rainfall fields. The potential of the stochastic generator is demonstrated using four precipitation cases observed by the fourth generation of Swiss weather radars that display significant non-stationarity due to the coexistence of stratiform and convective precipitation, differential rotation of the weather system and locally varying anisotropy. The generator is verified in its ability to reproduce both the global and the local Fourier power spectra of the precipitation field. The SSFT-based stochastic generator can be applied and extended to improve the probabilistic nowcasting of precipitation, design storm simulation, stochastic numerical weather prediction (NWP) downscaling, and also for other geophysical applications involving the simulation of complex non-stationary fields.

  8. Do fire severity effects on soil change in space and time in the short-term? What ash tells us

    Directory of Open Access Journals (Sweden)

    P. Pereira

    2013-05-01

    Full Text Available In the absence of data, the impact of fire, especially wildfires, is measured analysing the fire severity. This post-fire assessment is very useful because allow to identify the degree of destruction imposed by the fire. Among the techniques used to determine fire severity, ash colour is often used, that permit identify the degree of organic matter consumption (darker ash uncompleted combustion, lighter ash completed combustion. The objective of this paper was observed if fire severity changes in space and time, according to ash colour analysis, applying an index. The ash colour analysis was carried out one and fifteen days after the fire. In this area we identified ash with four different colours, black (B dark grey (DG, light gray (LG and white colour (W and some uncovered areas classified as bared soil (BS. Black and DG represent medium fire severity, LG and W, higher severity. The results showed that in the studied fire, the severity was high and a great part of the plot was uncovered by ash (BS. Fifteen days after BS increased as the fire severity index, from 6.05 to 6.45, showing that during this period the ash redistribution in a short period after the fire can influence the fire severity assessment. We did not identified significant differences between measurements and the coefficient of variation (CV% remained the same. However significant differences were identified with the spatial correlation analysis with Global Moran's I and the spatial structure of fire severity index. This is evidence that ash color changed in this period in the space and the traditional statistical methods did not detected, only with spatial analysis. The analysis of fire severity using ash color some days after the fire can induce important errors, because wind can (remix ash and a particle produced in one area can be easily exported to other.

  9. Use of Clustered Regularly Interspaced Short Palindromic Repeat Sequence Polymorphisms for Specific Detection of Enterohemorrhagic Escherichia coli Strains of Serotypes O26:H11, O45:H2, O103:H2, O111:H8, O121:H19, O145:H28, and O157:H7 by Real-Time PCR

    OpenAIRE

    Delannoy, Sabine; Beutin, Lothar; Fach, Patrick

    2012-01-01

    We explored the genetic diversity of the clustered regularly interspaced short palindromic repeat (CRISPR) regions of enterohemorrhagic Escherichia coli (EHEC) to design simplex real-time PCR assays for each of the seven most important EHEC serotypes worldwide. A panel of 958 E. coli strains investigated for their CRISPR loci by high-throughput real-time PCR showed that CRISPR polymorphisms in E. coli strongly correlated with both O:H serotypes and the presence of EHEC virulence factors (stx ...

  10. Free Space Optical Interconnect (FSOI) modules for short range data transfer applied to board to board high rate communication

    Science.gov (United States)

    Kaba, Myriam; Mallet, Maxime; Pujol, Laurence; Claudepierre, Christian; Veyron, Johannès.; Giroud, Romain; Mousseaux, Daniel; Quentel, Francois; Foucal, Vincent; Pez, Mathias

    2017-10-01

    To provide more flexibility in inter-board communication in blade chassis, we developed a Free Space Optical Interconnect (FSOI) system for short range high speed data transfer. We designed robust and low footprint components compliant with both a use in milaero environment and an operation up to 5 and 10 Gbps. The 5Gpbs configuration demonstrated large tolerance to misalignment between emitter and receiver modules: +1.5/-1 mm along optical axis, lateral tolerance of +/-1 mm and angular tolerances of +/-1.5°. Reliable performances have been demonstrated over a temperature range from -30°C to 80°C and constraint environment as thermal and damp heat cycles and vibrations. Increase the data rate of the FSO device one step beyond up to 10 Gbps requires dealing with mode partitioning troubles generated by the use of VCSEL lasers. We designed and evaluated an improved opto-mechanical combination to overcome this drawback. The resulting device shows error free 10 Gbps data transfer while keeping large tolerance to Tx/Rx misalignments.

  11. A Strategy for Short-Term Earthquake Forecasting Based on Combined Ground and Space-Based Observations

    Science.gov (United States)

    Kafatos, M.; Papadopoulos, G. A.; Karastathis, V. K.; Minadakis, G.; Ouzounov, D.; Pulinets, S. A.; Tramutoli, V.; Tsinganos, K.

    2014-12-01

    No standard methodologies regarding the short-term (hours, days, few weeks) forecasting of earthquakes have been widely adopted so far. However, promising approaches from ground-based (e.g. foreshocks) and space-based (e.g. thermal anomalies) observations have been described. We propose to apply a multidisciplinary strategy by performing real-time experiments towards the identification of space-time windows having increased probability beyond chance for the occurrence of strong earthquakes (M>5.5). This is a new collaborative study which will continue the best practices achieved from other projects such as the EU-FP7 PRE-EARTHQUAKE and the ongoing ISSI project LAICa. The test region covers the entire Greece which is of the highest seismicity all over western Eurasia, while closer attention will be given to the Corinth Rift (Central Greece) which is an asymmetric half-graben of high seismicity opening rapidly with geodetic extension rates up to about 15mmyr-1. Ground-based observations will mainly include seismicity, magnetometers and radon measurements while space observations will include the ones that may provide thermal anomalies, GPS and TEC. The strategy will include the development of a system operating in real-time basis with strong tools and protocols for the collection, archiving and evaluation of the different types of data. The software part of the system may incorporate three basic interfaces implemented via open source technology: (1) The up-streaming software interface for the collection and archiving of data; (2) The backend real-time software interface incorporating all the available models; (3) The frontend WEBGIS software interface that will allow for data representation and mapping. The establishment of some certain rules for issuing non-public seismic alerts is needed. Therefore, in this paper we will also discuss the significance of the proposed work for the issues of earthquake forecasting/prediction statements and what critical new

  12. Regularization by External Variables

    DEFF Research Database (Denmark)

    Bossolini, Elena; Edwards, R.; Glendinning, P. A.

    2016-01-01

    Regularization was a big topic at the 2016 CRM Intensive Research Program on Advances in Nonsmooth Dynamics. There are many open questions concerning well known kinds of regularization (e.g., by smoothing or hysteresis). Here, we propose a framework for an alternative and important kind of regula...... of regularization, by external variables that shadow either the state or the switch of the original system. The shadow systems are derived from and inspired by various applications in electronic control, predator-prey preference, time delay, and genetic regulation....

  13. Regularized maximum correntropy machine

    KAUST Repository

    Wang, Jim Jing-Yan

    2015-02-12

    In this paper we investigate the usage of regularized correntropy framework for learning of classifiers from noisy labels. The class label predictors learned by minimizing transitional loss functions are sensitive to the noisy and outlying labels of training samples, because the transitional loss functions are equally applied to all the samples. To solve this problem, we propose to learn the class label predictors by maximizing the correntropy between the predicted labels and the true labels of the training samples, under the regularized Maximum Correntropy Criteria (MCC) framework. Moreover, we regularize the predictor parameter to control the complexity of the predictor. The learning problem is formulated by an objective function considering the parameter regularization and MCC simultaneously. By optimizing the objective function alternately, we develop a novel predictor learning algorithm. The experiments on two challenging pattern classification tasks show that it significantly outperforms the machines with transitional loss functions.

  14. Short-term 222Rn activity concentration changes in underground spaces with limited air exchange with the atmosphere

    Directory of Open Access Journals (Sweden)

    T. A. Przylibski

    2011-04-01

    Full Text Available The authors investigated short-time changes in 222Rn activity concentration occurring yearly in two underground tourist facilities with limited air exchange with the atmosphere. One of them is Niedźwiedzia (Bear Cave in Kletno, Poland – a natural space equipped with locks ensuring isolation from the atmosphere. The other site is Fluorite Adit in Kletno, a section of a disused uranium mine. This adit is equipped with a mechanical ventilation system, operated periodically outside the opening times (at night. Both sites are situated within the same metamorphic rock complex, at similar altitudes, about 2 km apart. The measurements conducted revealed spring and autumn occurrence of convective air movements. In Bear Cave, this process causes a reduction in 222Rn activity concentration in the daytime, i.e. when tourists, guides and other staff are present in the cave. From the point of view of radiation protection, this is the best situation. For the rest of the year, daily concentrations of 222Rn activity in the cave are very stable. In Fluorite Adit, on the other hand, significant variations in daily 222Rn activity concentrations are recorded almost all year round. These changes are determined by the periods of activity and inactivity of mechanical ventilation. Unfortunately this is inactive in the daytime, which results in the highest values of 222Rn activity concentration at the times when tourists and staff are present in the adit. Slightly lower concentrations of radon in Fluorite Adit are recorded in the winter season, when convective air movements carry a substantial amount of radon out into the atmosphere. The incorrect usage of mechanical ventilation in Fluorite Adit results in the most unfavourable conditions in terms of radiation protection. The staff working in that facility are exposed practically throughout the year to the highest 222Rn activity concentrations, both at work (in the adit and at home (outside their working hours

  15. Fast and compact regular expression matching

    DEFF Research Database (Denmark)

    Bille, Philip; Farach-Colton, Martin

    2008-01-01

    We study 4 problems in string matching, namely, regular expression matching, approximate regular expression matching, string edit distance, and subsequence indexing, on a standard word RAM model of computation that allows logarithmic-sized words to be manipulated in constant time. We show how to ...... to improve the space and/or remove a dependency on the alphabet size for each problem using either an improved tabulation technique of an existing algorithm or by combining known algorithms in a new way....

  16. A non-stationary stochastic ensemble generator for radar rainfall fields based on the short-space Fourier transform

    Directory of Open Access Journals (Sweden)

    D. Nerini

    2017-06-01

    Full Text Available In this paper we present a non-stationary stochastic generator for radar rainfall fields based on the short-space Fourier transform (SSFT. The statistical properties of rainfall fields often exhibit significant spatial heterogeneity due to variability in the involved physical processes and influence of orographic forcing. The traditional approach to simulate stochastic rainfall fields based on the Fourier filtering of white noise is only able to reproduce the global power spectrum and spatial autocorrelation of the precipitation fields. Conceptually similar to wavelet analysis, the SSFT is a simple and effective extension of the Fourier transform developed for space–frequency localisation, which allows for using windows to better capture the local statistical structure of rainfall. The SSFT is used to generate stochastic noise and precipitation fields that replicate the local spatial correlation structure, i.e. anisotropy and correlation range, of the observed radar rainfall fields. The potential of the stochastic generator is demonstrated using four precipitation cases observed by the fourth generation of Swiss weather radars that display significant non-stationarity due to the coexistence of stratiform and convective precipitation, differential rotation of the weather system and locally varying anisotropy. The generator is verified in its ability to reproduce both the global and the local Fourier power spectra of the precipitation field. The SSFT-based stochastic generator can be applied and extended to improve the probabilistic nowcasting of precipitation, design storm simulation, stochastic numerical weather prediction (NWP downscaling, and also for other geophysical applications involving the simulation of complex non-stationary fields.

  17. Regularities of solar wind parameter changes based on spaced measurements at near-Earth orbit during cycles 20-24 as a basis for prediction of solar activity and space weather

    Science.gov (United States)

    Kuznetsova, Tamara

    Here we discuss parameters of the solar wind streams as consequences of activity of solar cycles 20-24. We use in the report results of our study of connection between solar wind parameters (IMF B, solar wind velocity V, concentration N, electric field Е = [V,B]) and IMF longitude angle U during period of SC20-24. We have used for the study data base of B, V, N, measured at 1 a.u. near ecliptic plane for period of 1963 - 2013.The azimuth component of IMF spiral corresponds to east-west component By (GSE) which plays important role in reconnection on magnetopause and in progress of geomagnetic activity. Resulting from the conducted study, main regularities determining relationship between solar wind parameters in each from SC20-24 have been derived. In particular, it was shown that E for By>0 has its maxima in each solar cycle at average U=80 deg, herewith the maxima for odd cycles (21, 23) are considerably larger than ones for even cycles (20, 22). Besides, the value of E for 23 cycle has the absolute maximum for By>0 among SC20-24! So, relative low value of maximum of sunspot number Wm=121 of SC23 is a parameter, which does not determine strength of solar wind electric field E and consequently geomagnetic activity. Geomagnetic index Dst(U) shows also absolute maximum of depression for cycle 23 at near the same U=80 deg. (By>0). B(U) is larger, Wm is larger for all U except interval for By>0, where B for odd cycles 21, 23 is higher than B for even ones 20,22. It should be noted that V (U) for SC with minimal Wm (20,23) has the highest maximum for By>0; maximum of V for Byminimum (near 2020) similar to Dalton minimum (near 1820).

  18. Annotation of Regular Polysemy

    DEFF Research Database (Denmark)

    Martinez Alonso, Hector

    Regular polysemy has received a lot of attention from the theory of lexical semantics and from computational linguistics. However, there is no consensus on how to represent the sense of underspecified examples at the token level, namely when annotating or disambiguating senses of metonymic words...

  19. GBT CHANG-ES: Enhancing Radio Halos in Edge-on Galaxies Through Short-Spacing Corrections

    Science.gov (United States)

    Trent Braun, Timothy; Kepley, Amanda; Rand, Richard J.; Mason, Brian Scott; CHANG-ES

    2018-01-01

    We present L- and C-band continuum Stokes I data from the Green Bank Telescope (GBT) of 35 edge-on spiral galaxies that are part of the Continuum Halos in Nearby Galaxies, an EVLA Survey (CHANG-ES). CHANG-ES is an Expanded Very Large Array (EVLA) large program to measure radio continuum emission from the halos of 35 edge-on spiral galaxies in order to address a wide variety of science goals, including constraining the structure of magnetic fields, understanding the origins of radio halos, and probing both cosmic ray transport and cosmic ray driven winds. These goals can be reached by studying radio halo scale heights, spectral index variations with height, and the distribution of intensity and position angle of polarized emission. In particular, we are interested in modeling non-thermal presssure gradients in the gaseous halos of nearby galaxies to predict how they contribute to the decrease in the rotation of extraplanar gas with increasing height off of the galactic midplanes (lagging halos). Ultimately, the study of lagging halos will help us probe the efficacy of gas cycling between the disk and the halo in nearby galaxies. Crucial to this and the rest of the CHANG-ES analysis is the combination of the VLA data (B,C,D configurations in L-band and C,D configurations in C-band) with the GBT data in order to fill in the missing short-spacings in the u-v plane, which increases our sensitivity to large-scale emission and allows us to recover the total flux density. We present preliminary results from two methods of combining single-dish and interferometic data, namely the use of GBT data cubes as a model for the CASA task tclean and combining the Fourier transforms of the images as weighted sums in the u-v plane (feathering). Lastly, we detail our new data reduction pipeline for our wideband GBT continuum data, with an emphasis on the application of a least-squares basket-weaving technique used to remove striping image artifacts that notoriously plague single

  20. Sparse structure regularized ranking

    KAUST Repository

    Wang, Jim Jing-Yan

    2014-04-17

    Learning ranking scores is critical for the multimedia database retrieval problem. In this paper, we propose a novel ranking score learning algorithm by exploring the sparse structure and using it to regularize ranking scores. To explore the sparse structure, we assume that each multimedia object could be represented as a sparse linear combination of all other objects, and combination coefficients are regarded as a similarity measure between objects and used to regularize their ranking scores. Moreover, we propose to learn the sparse combination coefficients and the ranking scores simultaneously. A unified objective function is constructed with regard to both the combination coefficients and the ranking scores, and is optimized by an iterative algorithm. Experiments on two multimedia database retrieval data sets demonstrate the significant improvements of the propose algorithm over state-of-the-art ranking score learning algorithms.

  1. Accelerating regular polygon beams.

    Science.gov (United States)

    Barwick, Shane

    2010-12-15

    Beams that possess high-intensity peaks that follow curved paths of propagation under linear diffraction have recently been shown to have a multitude of interesting uses. In this Letter, a family of phase-only masks is derived, and each mask gives rise to multiple accelerating intensity maxima. The curved paths of the peaks can be described by the vertices of a regular polygon that is centered on the optic axis and expands with propagation.

  2. Regular Single Valued Neutrosophic Hypergraphs

    Directory of Open Access Journals (Sweden)

    Muhammad Aslam Malik

    2016-12-01

    Full Text Available In this paper, we define the regular and totally regular single valued neutrosophic hypergraphs, and discuss the order and size along with properties of regular and totally regular single valued neutrosophic hypergraphs. We also extend work on completeness of single valued neutrosophic hypergraphs.

  3. The geometry of continuum regularization

    Energy Technology Data Exchange (ETDEWEB)

    Halpern, M.B.

    1987-03-01

    This lecture is primarily an introduction to coordinate-invariant regularization, a recent advance in the continuum regularization program. In this context, the program is seen as fundamentally geometric, with all regularization contained in regularized DeWitt superstructures on field deformations.

  4. Modeling polycrystals with regular polyhedra

    Directory of Open Access Journals (Sweden)

    Paulo Rangel Rios

    2006-06-01

    Full Text Available Polycrystalline structure is of paramount importance to materials science and engineering. It provides an important example of a space-filling irregular network structure that also occurs in foams as well as in certain biological tissues. Therefore, seeking an accurate description of the characteristics of polycrystals is of fundamental importance. Recently, one of the authors (MEG published a paper in which a method was devised of representation of irregular networks by regular polyhedra with curved faces. In Glicksman's method a whole class of irregular polyhedra with a given number of faces, N, is represented by a single symmetrical polyhedron with N curved faces. This paper briefly describes the topological and metric properties of these special polyhedra. They are then applied to two important problems of irregular networks: the dimensionless energy 'cost' of irregular networks, and the derivation of a 3D analogue of the von Neumann-Mullins equation for the growth rate of grains in a polycrystal.

  5. Regularities of multifractal measures

    Indian Academy of Sciences (India)

    Polish space. Many researchers [1, 5–9] had formulated density theorems with respect to. Hausdorff measure or packing measure in some spaces. On the other hand, the author in [6] adopted new measures – the so-called multifractal. Hausdorff measure and packing measure to analyze the multifractal structure of a given.

  6. Subretinal Implantation of Electrospun, Short Nanowire, and Smooth Poly(e-caprolactone) Scaffolds to the Subretinal Space of Porcine Eyes

    DEFF Research Database (Denmark)

    Christiansen, A T; Tao, Shanwen; Smith, M

    2012-01-01

    Biodegradable scaffolds play an important adjunct role in transplantation of retinal progenitor cells (RPCs) to the subretinal space. Poly(e-Caprolactone) (PCL) scaffolds with different modifications were subretinally implanted in 28 porcine eyes and evaluated by multifocal electroretinography (mf...

  7. Accreting fluids onto regular black holes via Hamiltonian approach

    Energy Technology Data Exchange (ETDEWEB)

    Jawad, Abdul [COMSATS Institute of Information Technology, Department of Mathematics, Lahore (Pakistan); Shahzad, M.U. [COMSATS Institute of Information Technology, Department of Mathematics, Lahore (Pakistan); University of Central Punjab, CAMS, UCP Business School, Lahore (Pakistan)

    2017-08-15

    We investigate the accretion of test fluids onto regular black holes such as Kehagias-Sfetsos black holes and regular black holes with Dagum distribution function. We analyze the accretion process when different test fluids are falling onto these regular black holes. The accreting fluid is being classified through the equation of state according to the features of regular black holes. The behavior of fluid flow and the existence of sonic points is being checked for these regular black holes. It is noted that the three-velocity depends on critical points and the equation of state parameter on phase space. (orig.)

  8. Modular Regularization Algorithms

    DEFF Research Database (Denmark)

    Jacobsen, Michael

    2004-01-01

    an iterative method. The parameter choice method is also used to demonstrate the implementation of the standard-form transformation. We have implemented a simple preconditioner aimed at the preconditioning of the general-form Tikhonov problem and demonstrate its simplicity and effciency. The steps taken...... and used to set up the illposed problems in the toolbox. Hereby, we are able to write regularization algorithms that automatically exploit structure in the ill-posed problem without being rewritten explicitly. We explain how to implement a stopping criteria for a parameter choice method based upon...

  9. Real space probe of short-range interaction between Cr in a ferromagnetic semiconductor ZnCrTe.

    Science.gov (United States)

    Kanazawa, Ken; Nishimura, Taku; Yoshida, Shoji; Shigekawa, Hidemi; Kuroda, Shinji

    2014-12-21

    The short-range interaction between Cr atoms was directly examined by scanning tunneling microscopy measurements on a Zn(0.95)Cr(0.05)Te film. Our measurements revealed that a Cr atom formed a localized state within the bandgap of ZnTe and this state was broadened for a pair of Cr atoms within a distance of ∼ 1 nm.

  10. Analyses of Magnetic Resonance Imaging of Cerebrospinal Fluid Dynamics Pre and Post Short and Long-Duration Space Flights

    Science.gov (United States)

    Alperin, Noam; Barr, Yael; Lee, Sang H.; Mason,Sara; Bagci, Ahmet M.

    2015-01-01

    Preliminary results are based on analyses of data from 17 crewmembers. The initial analysis compares pre to post-flight changes in total cerebral blood flow (CBF) and craniospinal CSF flow volume. Total CBF is obtained by summation of the mean flow rates through the 4 blood vessels supplying the brain (right and left internal carotid and vertebral arteries). Volumetric flow rates were obtained using an automated lumen segmentation technique shown to have 3-4-fold improved reproducibility and accuracy over manual lumen segmentation (6). Two cohorts, 5 short-duration and 8 long-duration crewmembers, who were scanned within 3 to 8 days post landing were included (4 short-duration crewmembers with MRI scans occurring beyond 10 days post flight were excluded). The VIIP Clinical Practice Guideline (CPG) classification is being used initially as a measure for VIIP syndrome severity. Median CPG scores of the short and long-duration cohorts were similar, 2. Mean preflight total CBF for the short and long-duration cohorts were similar, 863+/-144 and 747+/-119 mL/min, respectively. Percentage CBF changes for all short duration crewmembers were 11% or lower, within the range of normal physiological fluctuations in healthy individuals. In contrast, in 4 of the 8 long-duration crewmembers, the change in CBF exceeded the range of normal physiological fluctuation. In 3 of the 4 subjects an increase in CBF was measured. Large pre to post-flight changes in the craniospinal CSF flow volume were found in 6 of the 8 long-duration crewmembers. Box-Whisker plots of the CPG and the percent CBF and CSF flow changes for the two cohorts are shown in Figure 4. Examples of CSF flow waveforms for a short and two long-duration (CPG 0 and 3) are shown in Figure 5. Changes in CBF and CSF flow dynamics larger than normal physiological fluctuations were observed in the long-duration crewmembers. Changes in CSF flow were more pronounced than changes in CBF. Decreased CSF flow dynamics were observed

  11. Phase space and power spectral approaches for EEG-based automatic sleep-wake classification in humans: a comparative study using short and standard epoch lengths.

    Science.gov (United States)

    Brignol, Arnaud; Al-Ani, Tarik; Drouot, Xavier

    2013-03-01

    Sleep disorders in humans have become a public health issue in recent years. Sleep can be analysed by studying the electroencephalogram (EEG) recorded during a night's sleep. Alternating between sleep-wake stages gives information related to the sleep quality and quantity since this alternating pattern is highly affected during sleep disorders. Spectral composition of EEG signals varies according to sleep stages, alternating phases of high energy associated to low frequency (deep sleep) with periods of low energy associated to high frequency (wake and light sleep). The analysis of sleep in humans is usually made on periods (epochs) of 30-s length according to the original Rechtschaffen and Kales sleep scoring manual. In this work, we propose a new phase space-based (mainly based on Poincaré plot) algorithm for automatic classification of sleep-wake states in humans using EEG data gathered over relatively short-time periods. The effectiveness of our approach is demonstrated through a series of experiments involving EEG data from seven healthy adult female subjects and was tested on epoch lengths ranging from 3-s to 30-s. The performance of our phase space approach was compared to a 2-dimensional state space approach using the power spectral (PS) in two selected human-specific frequency bands. These powers were calculated by dividing integrated spectral amplitudes at selected human-specific frequency bands. The comparison demonstrated that the phase space approach gives better performance in the case of short as well as standard 30-s epoch lengths. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

  12. Maximal regularity for non-autonomous stochastic evolution ...

    Indian Academy of Sciences (India)

    Tôn Vi?t T?

    2017-11-17

    Nov 17, 2017 ... We construct unique strict solutions to the equation and show their maximal regularity. The abstract results are then applied to a stochastic partial differential equation. Keywords. Evolution operators; stochastic linear evolution equations; strict solutions; maximal regularity; UMD Banach spaces of type 2.

  13. Reciprocal-space and real-space analyses of compositional modulation in InAs/AlAs short-period superlattices

    Energy Technology Data Exchange (ETDEWEB)

    FOLLSTAEDT,DAVID M.; LEE,STEPHEN R.; RENO,JOHN L.; JONES,ERIC D.; TWESTEN,R.D.; NORMAN,A.G.; AHRENKIEL,S.P.; MOUTINHO,H.R.; MASCARENHAS,A.; MILLUNCHICK,J. MIRECKI

    2000-01-25

    The microstructure of lateral composition modulation in InAs/AlAs superlattices grown by MBE on InP is examined. The use of x-ray diffraction, TEM, AFM, and STEM to characterize the modulations is discussed. Combining the information from these techniques gives increased insight into the phenomenon and how to manipulate it. Diffraction measures the intensity of modulation and its wavelength, and is used to identify growth conditions giving strong modulation. The TEM and STEM analyses indicate that local compositions are modulated by as much as 0.38 InAs mole fraction. Plan-view images show that modulated structures consists of short ({approx_lt}0.2 {micro}m) In-rich wires with a 2D organization in a (001) growth plane. However, growth on miscut substrates can produce a single modulation along the miscut direction with much longer wires ({approx_gt}0.4 {micro}m), as desired for potential applications. Photoluminescence studies demonstrate that the modulation has large effects on the bandgap energy of the superlattice.

  14. Spaces

    Directory of Open Access Journals (Sweden)

    Maziar Nekovee

    2010-01-01

    Full Text Available Cognitive radio is being intensively researched as the enabling technology for license-exempt access to the so-called TV White Spaces (TVWS, large portions of spectrum in the UHF/VHF bands which become available on a geographical basis after digital switchover. Both in the US, and more recently, in the UK the regulators have given conditional endorsement to this new mode of access. This paper reviews the state-of-the-art in technology, regulation, and standardisation of cognitive access to TVWS. It examines the spectrum opportunity and commercial use cases associated with this form of secondary access.

  15. Regular black hole in three dimensions

    OpenAIRE

    Myung, Yun Soo; Yoon, Myungseok

    2008-01-01

    We find a new black hole in three dimensional anti-de Sitter space by introducing an anisotropic perfect fluid inspired by the noncommutative black hole. This is a regular black hole with two horizons. We compare thermodynamics of this black hole with that of non-rotating BTZ black hole. The first-law of thermodynamics is not compatible with the Bekenstein-Hawking entropy.

  16. Adaptive Regularization of Neural Classifiers

    DEFF Research Database (Denmark)

    Andersen, Lars Nonboe; Larsen, Jan; Hansen, Lars Kai

    1997-01-01

    We present a regularization scheme which iteratively adapts the regularization parameters by minimizing the validation error. It is suggested to use the adaptive regularization scheme in conjunction with optimal brain damage pruning to optimize the architecture and to avoid overfitting. Furthermore......, we propose an improved neural classification architecture eliminating an inherent redundancy in the widely used SoftMax classification network. Numerical results demonstrate the viability of the method...

  17. Existence of connected regular and nearly regular graphs

    OpenAIRE

    Ganesan, Ghurumuruhan

    2018-01-01

    For integers $k \\geq 2$ and $n \\geq k+1$, we prove the following: If $n\\cdot k$ is even, there is a connected $k$-regular graph on $n$ vertices. If $n\\cdot k$ is odd, there is a connected nearly $k$-regular graph on $n$ vertices.

  18. Statistical Short-Range Guidance for Peak Wind Speed Forecasts on Kennedy Space Center/Cape Canaveral Air Force Station: Phase I Results

    Science.gov (United States)

    Lambert, Winifred C.; Merceret, Francis J. (Technical Monitor)

    2002-01-01

    This report describes the results of the ANU's (Applied Meteorology Unit) Short-Range Statistical Forecasting task for peak winds. The peak wind speeds are an important forecast element for the Space Shuttle and Expendable Launch Vehicle programs. The Keith Weather Squadron and the Spaceflight Meteorology Group indicate that peak winds are challenging to forecast. The Applied Meteorology Unit was tasked to develop tools that aid in short-range forecasts of peak winds at tower sites of operational interest. A 7 year record of wind tower data was used in the analysis. Hourly and directional climatologies by tower and month were developed to determine the seasonal behavior of the average and peak winds. In all climatologies, the average and peak wind speeds were highly variable in time. This indicated that the development of a peak wind forecasting tool would be difficult. Probability density functions (PDF) of peak wind speed were calculated to determine the distribution of peak speed with average speed. These provide forecasters with a means of determining the probability of meeting or exceeding a certain peak wind given an observed or forecast average speed. The climatologies and PDFs provide tools with which to make peak wind forecasts that are critical to safe operations.

  19. A criterion for regular sequences

    Indian Academy of Sciences (India)

    R. Narasimhan (Krishtel eMaging) 1461 1996 Oct 15 13:05:22

    D P PATIL1, U STORCH2 and J ST ¨UCKRAD3. 1Department of Mathematics, Indian Institute of Science, Bangalore 560 012, India ... For general notations in com- mutative algebra we also refer to [1]. ... Note that every sequence is a strongly regular as well as regular sequence on the zero module. Further, it is clear that a ...

  20. Online co-regularized algorithms

    NARCIS (Netherlands)

    Ruijter, T. de; Tsivtsivadze, E.; Heskes, T.

    2012-01-01

    We propose an online co-regularized learning algorithm for classification and regression tasks. We demonstrate that by sequentially co-regularizing prediction functions on unlabeled data points, our algorithm provides improved performance in comparison to supervised methods on several UCI benchmarks

  1. Natural selection and mechanistic regularity.

    Science.gov (United States)

    DesAutels, Lane

    2016-06-01

    In this article, I address the question of whether natural selection operates regularly enough to qualify as a mechanism of the sort characterized by Machamer, Darden, and Craver (2000). Contrary to an influential critique by Skipper and Millstein (2005), I argue that natural selection can be seen to be regular enough to qualify as an MDC mechanism just fine-as long as we pay careful attention to some important distinctions regarding mechanistic regularity and abstraction. Specifically, I suggest that when we distinguish between process vs. product regularity, mechanism-internal vs. mechanism-external sources of irregularity, and abstract vs. concrete regularity, we can see that natural selection is only irregular in senses that are unthreatening to its status as an MDC mechanism. Copyright © 2016 Elsevier Ltd. All rights reserved.

  2. A method for a short-term forecast of the absorbed dose accumulation dynamics on the international space station based on radiation monitoring system data

    Science.gov (United States)

    Lishnevskii, A. E.; Benghin, V. V.

    2014-12-01

    Many papers are devoted to the prediction of radiation conditions on board of a spacecraft (Pichkhadze et al., 2004; Khamidullina et al., 2008; 2012), and a number of software systems for corresponding calculations have been developed: the US information system CREME96 (https://creme.isde.vander-bilt.edu/); European SPENVIS (http://www.spenvis.oma.be/intro.php); Russian SEREIS (Kuznetsov et al., 2001; Model' kosmosa, 2007) and COSRAD (http://cosrad.sinp.msu.ru/manual.html; Kuznetsov et al., 2011) based on the models of the radiation environment in near-Earth space (Bashkirov et al., 1998; Nymmik, 2004; Model' kosmosa, 2007; Kuznetsov et al., 2011). In this paper we propose a simple calculation algorithm of short-term (for a few days) forecasting of dynamics of the radiation dose on the International Space Station (ISS) in radiation environment undisturbed by solar proton events. This algorithm does not use radiation environment models and detailed ballistic calculations, while it uses data of the onboard radiation monitoring system (RMS) and empirical relations, obtained for ISS orbital motion.

  3. Statistical Short-Range Guidance for Peak Wind Forecasts on Kennedy Space Center/Cape Canaveral Air Force Station, Phase III

    Science.gov (United States)

    Crawford, Winifred

    2010-01-01

    This final report describes the development of a peak wind forecast tool to assist forecasters in determining the probability of violating launch commit criteria (LCC) at Kennedy Space Center (KSC) and Cape Canaveral Air Force Station (CCAFS). The peak winds are an important forecast element for both the Space Shuttle and Expendable Launch Vehicle (ELV) programs. The LCC define specific peak wind thresholds for each launch operation that cannot be exceeded in order to ensure the safety of the vehicle. The 45th Weather Squadron (45 WS) has found that peak winds are a challenging parameter to forecast, particularly in the cool season months of October through April. Based on the importance of forecasting peak winds, the 45 WS tasked the Applied Meteorology Unit (AMU) to develop a short-range peak-wind forecast tool to assist in forecasting LCC violations.The tool includes climatologies of the 5-minute mean and peak winds by month, hour, and direction, and probability distributions of the peak winds as a function of the 5-minute mean wind speeds.

  4. Effort variation regularization in sound field reproduction

    DEFF Research Database (Denmark)

    Stefanakis, Nick; Jacobsen, Finn; Sarris, Ioannis

    2010-01-01

    . Specifically, it is suggested that the phase differential of the source driving signals should be in agreement with the phase differential of the desired sound pressure field. The performance of the suggested method is compared with that of conventional effort regularization, wave field synthesis (WFS......In this paper, active control is used in order to reproduce a given sound field in an extended spatial region. A method is proposed which minimizes the reproduction error at a number of control positions with the reproduction sources holding a certain relation within their complex strengths......), and adaptive wave field synthesis (AWFS), both under free-field conditions and in reverberant rooms. It is shown that effort variation regularization overcomes the problems associated with small spaces and with a low ratio of direct to reverberant energy, improving thus the reproduction accuracy...

  5. Chiral Perturbation Theory With Lattice Regularization

    CERN Document Server

    Ouimet, P P A

    2005-01-01

    In this work, alternative methods to regularize chiral perturbation theory are discussed. First, Long Distance Regularization will be considered in the presence of the decuplet of the lightest spin 32 baryons for several different observables. This serves motivation and introduction to the use of the lattice regulator for chiral perturbation theory. The mesonic, baryonic and anomalous sectors of chiral perturbation theory will be formulated on a lattice of space time points. The consistency of the lattice as a regulator will be discussed in the context of the meson and baryon masses. Order a effects will also be discussed for the baryon masses, sigma terms and magnetic moments. The work will close with an attempt to derive an effective Wess-Zumino-Witten Lagrangian for Wilson fermions at non-zero a. Following this discussion, there will be a proposal for a phenomenologically useful WZW Lagrangian at non-zero a.

  6. Extreme values, regular variation and point processes

    CERN Document Server

    Resnick, Sidney I

    1987-01-01

    Extremes Values, Regular Variation and Point Processes is a readable and efficient account of the fundamental mathematical and stochastic process techniques needed to study the behavior of extreme values of phenomena based on independent and identically distributed random variables and vectors It presents a coherent treatment of the distributional and sample path fundamental properties of extremes and records It emphasizes the core primacy of three topics necessary for understanding extremes the analytical theory of regularly varying functions; the probabilistic theory of point processes and random measures; and the link to asymptotic distribution approximations provided by the theory of weak convergence of probability measures in metric spaces The book is self-contained and requires an introductory measure-theoretic course in probability as a prerequisite Almost all sections have an extensive list of exercises which extend developments in the text, offer alternate approaches, test mastery and provide for enj...

  7. 14 CFR 314.20 - Regular monthly computation.

    Science.gov (United States)

    2010-01-01

    ... 14 Aeronautics and Space 4 2010-01-01 2010-01-01 false Regular monthly computation. 314.20 Section 314.20 Aeronautics and Space OFFICE OF THE SECRETARY, DEPARTMENT OF TRANSPORTATION (AVIATION... computation. (a) The Department will monitor the number of full-time employees of each carrier, including...

  8. Shortness of Breath

    Science.gov (United States)

    ... with obesity hypoventilation syndrome also have sleep apnea. Deconditioning If you are not active or do not exer- cise regularly, as a result of being out of shape and experiencing muscle fatigue, you may develop shortness of breath with physical exertion beyond your customary activity such as when ...

  9. NONCONVEX REGULARIZATION FOR SHAPE PRESERVATION

    Energy Technology Data Exchange (ETDEWEB)

    CHARTRAND, RICK [Los Alamos National Laboratory

    2007-01-16

    The authors show that using a nonconvex penalty term to regularize image reconstruction can substantially improve the preservation of object shapes. The commonly-used total-variation regularization, {integral}|{del}u|, penalizes the length of the object edges. They show that {integral}|{del}u|{sup p}, 0 < p < 1, only penalizes edges of dimension at least 2-p, and thus finite-length edges not at all. We give numerical examples showing the resulting improvement in shape preservation.

  10. Regularization with a pruning prior

    DEFF Research Database (Denmark)

    Goutte, Cyril; Hansen, Lars Kai

    1997-01-01

    We investigate the use of a regularization priorthat we show has pruning properties. Analyses areconducted both using a Bayesian framework and withthe generalization method, on a simple toyproblem. Results are thoroughly compared withthose obtained with a traditional weight decay.......We investigate the use of a regularization priorthat we show has pruning properties. Analyses areconducted both using a Bayesian framework and withthe generalization method, on a simple toyproblem. Results are thoroughly compared withthose obtained with a traditional weight decay....

  11. Commuting Π-regular rings

    Directory of Open Access Journals (Sweden)

    Shervin Sahebi

    2014-05-01

    Full Text Available ‎$R$ is called commuting regular ring (resp‎. ‎semigroupif‎ for each $x,y\\in R$ there exists $a\\in R$‎ such that$xy=yxayx$‎. ‎In this paper‎, ‎we introduce the concept of‎‎commuting $\\pi$-regular rings (resp‎. ‎semigroups and‎‎study various properties of them.

  12. Implicit Regularization in Deep Learning

    OpenAIRE

    Neyshabur, Behnam

    2017-01-01

    In an attempt to better understand generalization in deep learning, we study several possible explanations. We show that implicit regularization induced by the optimization method is playing a key role in generalization and success of deep learning models. Motivated by this view, we study how different complexity measures can ensure generalization and explain how optimization algorithms can implicitly regularize complexity measures. We empirically investigate the ability of these measures to ...

  13. Chimeric mitochondrial peptides from contiguous regular and swinger RNA

    Directory of Open Access Journals (Sweden)

    Hervé Seligmann

    2016-01-01

    Full Text Available Previous mass spectrometry analyses described human mitochondrial peptides entirely translated from swinger RNAs, RNAs where polymerization systematically exchanged nucleotides. Exchanges follow one among 23 bijective transformation rules, nine symmetric exchanges (X ↔ Y, e.g. A ↔ C and fourteen asymmetric exchanges (X → Y → Z → X, e.g. A → C → G → A, multiplying by 24 DNA's protein coding potential. Abrupt switches from regular to swinger polymerization produce chimeric RNAs. Here, human mitochondrial proteomic analyses assuming abrupt switches between regular and swinger transcriptions, detect chimeric peptides, encoded by part regular, part swinger RNA. Contiguous regular- and swinger-encoded residues within single peptides are stronger evidence for translation of swinger RNA than previously detected, entirely swinger-encoded peptides: regular parts are positive controls matched with contiguous swinger parts, increasing confidence in results. Chimeric peptides are 200× rarer than swinger peptides (3/100,000 versus 6/1000. Among 186 peptides with >8 residues for each regular and swinger parts, regular parts of eleven chimeric peptides correspond to six among the thirteen recognized, mitochondrial protein-coding genes. Chimeric peptides matching partly regular proteins are rarer and less expressed than chimeric peptides matching non-coding sequences, suggesting targeted degradation of misfolded proteins. Present results strengthen hypotheses that the short mitogenome encodes far more proteins than hitherto assumed. Entirely swinger-encoded proteins could exist.

  14. The use of Pauli-Villars regularization in string theory

    Science.gov (United States)

    Ambjørn, J.; Makeenko, Y.

    2017-11-01

    The proper-time regularization of bosonic string reproduces the results of canonical quantization in a special scaling limit where the length in target space has to be renormalized. We repeat the analysis for the Pauli-Villars regularization and demonstrate the universality of the results. In the mean-field approximation, we compute the susceptibility anomalous dimension and show it equals 1/2. We discuss the relation with the previously known results on lattice strings.

  15. Regular Mittag-Leffler kernels and spectral decomposition of a class of non-selfadjoint operators

    Energy Technology Data Exchange (ETDEWEB)

    Gubreev, G M [South Ukrainian State K.D.Ushynsky Pedagogical University, Odessa (Ukraine)

    2005-02-28

    We define abstract Mittag-Leffler kernels with values in a separable Hilbert space. A Mittag-Leffler kernel is said to be c-regular (resp. d-regular) if it generates an integral transform of Fourier-Dzhrbashyan type (resp. if the space has an unconditional basis consisting of values of the kernel). We give a complete description of d-regular and c-regular kernels, which enables us to answer a question of M.G. Krein. We apply the notion of a regular Mittag-Leffler kernel to construct the spectral decomposition for one-dimensional perturbations of fractional powers of dissipative Volterra operators.

  16. Vertex-deleted subgraphs and regular factors from regular graph☆

    Science.gov (United States)

    Lu, Hongliang; Wang, Wei; Bai, Bing

    2011-01-01

    Let k, m, and r be three integers such that 2≤k≤m≤r. Let G be a 2r-regular, 2m-edge-connected graph of odd order. We obtain some sufficient conditions for G−v to contain a k-factor for all v∈V(G). PMID:21984842

  17. A Pythagoras proof of Szemer\\'edi's regularity lemma

    OpenAIRE

    Schrijver, Alexander

    2012-01-01

    We give a short proof of Szemer\\'edi's regularity lemma, based on elementary Euclidean geometry. The general line of the proof is that of the standard proof (in fact, of Szemer\\'edi's original proof), but most technicalities are swallowed by applying Pythagoras' theorem.

  18. Regularity of laboratory supplies and delivery of histopathology ...

    African Journals Online (AJOL)

    Arun Kumar Agnihotri

    2015-06-23

    Jun 23, 2015 ... Open Access. Short Communication. Mutagubya et al. Arch Med Biomed Res. 2015;2:131-6. doi:10.4314/ambr.v2i4.3. 131. Regularity of laboratory supplies and delivery of histopathology services in the department of Pathology,. Makerere University College of Health. Sciences, Uganda, between January.

  19. Empirical laws, regularity and necessity

    NARCIS (Netherlands)

    Koningsveld, H.

    1973-01-01

    In this book I have tried to develop an analysis of the concept of an empirical law, an analysis that differs in many ways from the alternative analyse's found in contemporary literature dealing with the subject.

    1 am referring especially to two well-known views, viz. the regularity and

  20. Regularization in Matrix Relevance Learning

    NARCIS (Netherlands)

    Schneider, Petra; Bunte, Kerstin; Stiekema, Han; Hammer, Barbara; Villmann, Thomas; Biehl, Michael

    A In this paper, we present a regularization technique to extend recently proposed matrix learning schemes in learning vector quantization (LVQ). These learning algorithms extend the concept of adaptive distance measures in LVQ to the use of relevance matrices. In general, metric learning can

  1. Regular Matroids with Graphic Cocircuits

    OpenAIRE

    Papalamprou, Konstantinos; Pitsoulis, Leonidas

    2009-01-01

    We introduce the notion of graphic cocircuits and show that a large class of regular matroids with graphic cocircuits belongs to the class of signed-graphic matroids. Moreover, we provide an algorithm which determines whether a cographic matroid with graphic cocircuits is signed-graphic or not.

  2. Interval matrices: Regularity generates singularity

    Czech Academy of Sciences Publication Activity Database

    Rohn, Jiří; Shary, S.P.

    2018-01-01

    Roč. 540, 1 March (2018), s. 149-159 ISSN 0024-3795 Institutional support: RVO:67985807 Keywords : interval matrix * regularity * singularity * P-matrix * absolute value equation * diagonally singilarizable matrix Subject RIV: BA - General Mathematics Impact factor: 0.973, year: 2016

  3. Regularized Statistical Analysis of Anatomy

    DEFF Research Database (Denmark)

    Sjöstrand, Karl

    2007-01-01

    This thesis presents the application and development of regularized methods for the statistical analysis of anatomical structures. Focus is on structure-function relationships in the human brain, such as the connection between early onset of Alzheimer’s disease and shape changes of the corpus cal...

  4. Regular languages, regular grammars and automata in splicing systems

    Science.gov (United States)

    Mohamad Jan, Nurhidaya; Fong, Wan Heng; Sarmin, Nor Haniza

    2013-04-01

    Splicing system is known as a mathematical model that initiates the connection between the study of DNA molecules and formal language theory. In splicing systems, languages called splicing languages refer to the set of double-stranded DNA molecules that may arise from an initial set of DNA molecules in the presence of restriction enzymes and ligase. In this paper, some splicing languages resulted from their respective splicing systems are shown. Since all splicing languages are regular, languages which result from the splicing systems can be further investigated using grammars and automata in the field of formal language theory. The splicing language can be written in the form of regular languages generated by grammar. Besides that, splicing systems can be accepted by automata. In this research, two restriction enzymes are used in splicing systems namely BfuCI and NcoI.

  5. Temporal regularity in speech perception: Is regularity beneficial or deleterious?

    Science.gov (United States)

    Geiser, Eveline; Shattuck-Hufnagel, Stefanie

    2012-04-01

    Speech rhythm has been proposed to be of crucial importance for correct speech perception and language learning. This study investigated the influence of speech rhythm in second language processing. German pseudo-sentences were presented to participants in two conditions: 'naturally regular speech rhythm' and an 'emphasized regular rhythm'. Nine expert English speakers with 3.5±1.6 years of German training repeated each sentence after hearing it once over headphones. Responses were transcribed using the International Phonetic Alphabet and analyzed for the number of correct, false and missing consonants as well as for consonant additions. The over-all number of correct reproductions of consonants did not differ between the two experimental conditions. However, speech rhythmicization significantly affected the serial position curve of correctly reproduced syllables. The results of this pilot study are consistent with the view that speech rhythm is important for speech perception.

  6. Chaos and Regularity in the Doubly Magic Nucleus 208Pb

    Science.gov (United States)

    Dietz, B.; Heusler, A.; Maier, K. H.; Richter, A.; Brown, B. A.

    2017-01-01

    High-resolution experiments have recently lead to a complete identification (energy, spin, and parity) of 151 nuclear levels up to an excitation energy of Ex=6.20 MeV in 208Pb [Heusler et al., Phys. Rev. C 93, 054321 (2016), 10.1103/PhysRevC.93.054321]. We present a thorough study of the fluctuation properties in the energy spectra of the unprecedented set of nuclear bound states. In a first approach, we group states with the same spin and parity into 14 subspectra, analyze standard statistical measures for short- and long-range correlations, i.e., the nearest-neighbor spacing distribution, the number variance Σ2, the Dyson-Mehta Δ3 statistics, and the novel distribution of the ratios of consecutive spacings of adjacent energy levels in each energy sequence, and then compute their ensemble average. Their comparison with a random matrix ensemble which interpolates between Poisson statistics expected for regular systems and the Gaussian orthogonal ensemble (GOE) predicted for chaotic systems shows that the data are well described by the GOE. In a second approach, following an idea of Rosenzweig and Porter [Phys. Rev. 120, 1698 (1960), 10.1103/PhysRev.120.1698], we consider the complete spectrum composed of the independent subspectra. We analyze their fluctuation properties using the method of Bayesian inference involving a quantitative measure, called the chaoticity parameter f , which also interpolates between Poisson (f =0 ) and GOE statistics (f =1 ). It turns out to be f ≈0.9 . This is so far the closest agreement with a GOE observed in the spectra of bound states in a nucleus. The same analysis is also performed with spectra computed on the basis of shell model calculations with different interactions (surface-delta interaction, Kuo-Brown, Michigan-three-Yukawa). While the simple surface-delta interaction exhibits features typical for nuclear many-body systems with regular dynamics, the other, more realistic interactions yield chaoticity parameters f close

  7. Regular and conformal regular cores for static and rotating solutions

    Energy Technology Data Exchange (ETDEWEB)

    Azreg-Aïnou, Mustapha

    2014-03-07

    Using a new metric for generating rotating solutions, we derive in a general fashion the solution of an imperfect fluid and that of its conformal homolog. We discuss the conditions that the stress–energy tensors and invariant scalars be regular. On classical physical grounds, it is stressed that conformal fluids used as cores for static or rotating solutions are exempt from any malicious behavior in that they are finite and defined everywhere.

  8. Regular Exercisers Have Stronger Pelvic Floor Muscles than Non-Regular Exercisers at Midpregnancy.

    Science.gov (United States)

    Bø, Kari; Ellstrøm Engh, Marie; Hilde, Gunvor

    2017-12-26

    Today, all healthy pregnant women are encouraged to be physically active throughout pregnancy, with recommendations to participate in at least 30 min of aerobic activity on most days of the week, in addition to perform strength training of the major muscle groups 2-3 days per week, and also pelvic floor muscle training. There is, however, an ongoing debate whether general physical activity enhances or declines pelvic floor muscle function. To compare vaginal resting pressure, pelvic floor muscle strength and endurance in regular exercisers (exercise ≥ 30 minutes ≥ 3 times per week) and non-exercisers at mid-pregnancy. Furthermore, to assess whether regular general exercise or pelvic floor muscle strength was associated with urinary incontinence. This was a cross-sectional study at mean gestational week 20.9 (± 1.4) including 218 nulliparous pregnant women, mean age 28.6 years (range 19-40) and pre-pregnancy body mass index 23.9 kg/m 2 (SD 4.0). Vaginal resting pressure, pelvic floor muscle strength and pelvic floor muscle endurance were measured by a high precision pressure transducer connected to a vaginal balloon. International Consultation on Incontinence Questionnaire Urinary Incontinence Short Form was used to assess urinary incontinence. Differences between groups were analyzed using Independent Sample T-test. Linear regression analysis was conducted to adjust for pre-pregnancy body mass index, age, smoking during pregnancy and regular pelvic floor muscle training during pregnancy. P-value was set to ≤ 0.05. Regular exercisers had statistically significant stronger ( mean 6.4 cm H 2 O (95% CI: 1.7, 11.2)) and more enduring ( mean 39.9 cm H 2 Osec (95% CI: 42.2, 75.7)) pelvic floor muscles. Only pelvic floor muscle strength remained statistically significant, when adjusting for possible confounders. Pelvic floor muscle strength and not regular general exercise was associated with urinary continence (adjusted B: -6.4 (95% CI: -11.5, -1.4)). Regular

  9. From inactive to regular jogger

    DEFF Research Database (Denmark)

    Lund-Cramer, Pernille; Brinkmann Løite, Vibeke; Bredahl, Thomas Viskum Gjelstrup

    to translate intention into regular behavior. TTM: Informants expressed rapid progression from the pre-contemplation to the action stage caused by an early shift in the decisional balance towards advantages overweighing disadvantages. This was followed by a continuous improvement in self-efficacy, which...... jogging-related self-efficacy, and deployment of realistic goal setting was significant in the achievement of regular jogging behavior. Cognitive factors included a positive change in both affective and instrumental beliefs about jogging. Expectations from society and social relations had limited effect...... health, and well-being. An experience-driven change in affective beliefs contributed to the shift in the intention. Informants’ initial expectations to own jogging abilities were realistic and modest, which in combination with a GPS-training watch applied sufficient perceived behavioral control...

  10. Maximum mutual information regularized classification

    KAUST Repository

    Wang, Jim Jing-Yan

    2014-09-07

    In this paper, a novel pattern classification approach is proposed by regularizing the classifier learning to maximize mutual information between the classification response and the true class label. We argue that, with the learned classifier, the uncertainty of the true class label of a data sample should be reduced by knowing its classification response as much as possible. The reduced uncertainty is measured by the mutual information between the classification response and the true class label. To this end, when learning a linear classifier, we propose to maximize the mutual information between classification responses and true class labels of training samples, besides minimizing the classification error and reducing the classifier complexity. An objective function is constructed by modeling mutual information with entropy estimation, and it is optimized by a gradient descend method in an iterative algorithm. Experiments on two real world pattern classification problems show the significant improvements achieved by maximum mutual information regularization.

  11. How to quantify student's regularity?

    OpenAIRE

    Shirvani Boroujeni, Mina; Sharma, Kshitij; Kidzinski, Lukasz; Lucignano, Lorenzo; Dillenbourg, Pierre

    2016-01-01

    Studies carried out in classroom-based learning context, have consistently shown a positive relation between students' conscientiousness and their academic success. We hypothesize that time management and regularity are main constructing blocks of students' conscientiousness in the context of online education. In online education, despite intuitive arguments supporting on-demand courses as more flexible delivery of knowledge, completion rate is higher in the courses with rigid temporal constr...

  12. Variational analysis of regular mappings theory and applications

    CERN Document Server

    Ioffe, Alexander D

    2017-01-01

    This monograph offers the first systematic account of (metric) regularity theory in variational analysis. It presents new developments alongside classical results and demonstrates the power of the theory through applications to various problems in analysis and optimization theory. The origins of metric regularity theory can be traced back to a series of fundamental ideas and results of nonlinear functional analysis and global analysis centered around problems of existence and stability of solutions of nonlinear equations. In variational analysis, regularity theory goes far beyond the classical setting and is also concerned with non-differentiable and multi-valued operators. The present volume explores all basic aspects of the theory, from the most general problems for mappings between metric spaces to those connected with fairly concrete and important classes of operators acting in Banach and finite dimensional spaces. Written by a leading expert in the field, the book covers new and powerful techniques, whic...

  13. Regular Caratheodory-type selectors under no convexity assumptions

    NARCIS (Netherlands)

    Chistyakov, VV

    2005-01-01

    We prove the existence of Caratheodory-type selectors (that is, measurable in the first variable and having certain regularity properties like Lipschitz continuity, absolute continuity or bounded variation in the second variable) for multifunctions mapping the product of a measurable space and an

  14. Words cluster phonetically beyond phonotactic regularities.

    Science.gov (United States)

    Dautriche, Isabelle; Mahowald, Kyle; Gibson, Edward; Christophe, Anne; Piantadosi, Steven T

    2017-06-01

    Recent evidence suggests that cognitive pressures associated with language acquisition and use could affect the organization of the lexicon. On one hand, consistent with noisy channel models of language (e.g., Levy, 2008), the phonological distance between wordforms should be maximized to avoid perceptual confusability (a pressure for dispersion). On the other hand, a lexicon with high phonological regularity would be simpler to learn, remember and produce (e.g., Monaghan et al., 2011) (a pressure for clumpiness). Here we investigate wordform similarity in the lexicon, using measures of word distance (e.g., phonological neighborhood density) to ask whether there is evidence for dispersion or clumpiness of wordforms in the lexicon. We develop a novel method to compare lexicons to phonotactically-controlled baselines that provide a null hypothesis for how clumpy or sparse wordforms would be as the result of only phonotactics. Results for four languages, Dutch, English, German and French, show that the space of monomorphemic wordforms is clumpier than what would be expected by the best chance model according to a wide variety of measures: minimal pairs, average Levenshtein distance and several network properties. This suggests a fundamental drive for regularity in the lexicon that conflicts with the pressure for words to be as phonologically distinct as possible. Copyright © 2017 Elsevier B.V. All rights reserved.

  15. Graph Regularized Auto-Encoders for Image Representation.

    Science.gov (United States)

    Yiyi Liao; Yue Wang; Yong Liu

    2017-06-01

    Image representation has been intensively explored in the domain of computer vision for its significant influence on the relative tasks such as image clustering and classification. It is valuable to learn a low-dimensional representation of an image which preserves its inherent information from the original image space. At the perspective of manifold learning, this is implemented with the local invariant idea to capture the intrinsic low-dimensional manifold embedded in the high-dimensional input space. Inspired by the recent successes of deep architectures, we propose a local invariant deep nonlinear mapping algorithm, called graph regularized auto-encoder (GAE). With the graph regularization, the proposed method preserves the local connectivity from the original image space to the representation space, while the stacked auto-encoders provide explicit encoding model for fast inference and powerful expressive capacity for complex modeling. Theoretical analysis shows that the graph regularizer penalizes the weighted Frobenius norm of the Jacobian matrix of the encoder mapping, where the weight matrix captures the local property in the input space. Furthermore, the underlying effects on the hidden representation space are revealed, providing insightful explanation to the advantage of the proposed method. Finally, the experimental results on both clustering and classification tasks demonstrate the effectiveness of our GAE as well as the correctness of the proposed theoretical analysis, and it also suggests that GAE is a superior solution to the current deep representation learning techniques comparing with variant auto-encoders and existing local invariant methods.

  16. Thermodynamics of regular accelerating black holes

    Science.gov (United States)

    Astorino, Marco

    2017-03-01

    Using the covariant phase space formalism, we compute the conserved charges for a solution, describing an accelerating and electrically charged Reissner-Nordstrom black hole. The metric is regular provided that the acceleration is driven by an external electric field, in spite of the usual string of the standard C-metric. The Smarr formula and the first law of black hole thermodynamics are fulfilled. The resulting mass has the same form of the Christodoulou-Ruffini irreducible mass. On the basis of these results, we can extrapolate the mass and thermodynamics of the rotating C-metric, which describes a Kerr-Newman-(A)dS black hole accelerated by a pulling string.

  17. Space space space

    CERN Document Server

    Trembach, Vera

    2014-01-01

    Space is an introduction to the mysteries of the Universe. Included are Task Cards for independent learning, Journal Word Cards for creative writing, and Hands-On Activities for reinforcing skills in Math and Language Arts. Space is a perfect introduction to further research of the Solar System.

  18. Tree games with regular objectives

    Directory of Open Access Journals (Sweden)

    Marcin Przybyłko

    2014-08-01

    Full Text Available We study tree games developed recently by Matteo Mio as a game interpretation of the probabilistic μ-calculus. With expressive power comes complexity. Mio showed that tree games are able to encode Blackwell games and, consequently, are not determined under deterministic strategies. We show that non-stochastic tree games with objectives recognisable by so-called game automata are determined under deterministic, finite memory strategies. Moreover, we give an elementary algorithmic procedure which, for an arbitrary regular language L and a finite non-stochastic tree game with a winning objective L decides if the game is determined under deterministic strategies.

  19. Academic Training Lecture - Regular Programme

    CERN Multimedia

    PH Department

    2011-01-01

    Regular Lecture Programme 9 May 2011 ACT Lectures on Detectors - Inner Tracking Detectors by Pippa Wells (CERN) 10 May 2011 ACT Lectures on Detectors - Calorimeters (2/5) by Philippe Bloch (CERN) 11 May 2011 ACT Lectures on Detectors - Muon systems (3/5) by Kerstin Hoepfner (RWTH Aachen) 12 May 2011 ACT Lectures on Detectors - Particle Identification and Forward Detectors by Peter Krizan (University of Ljubljana and J. Stefan Institute, Ljubljana, Slovenia) 13 May 2011 ACT Lectures on Detectors - Trigger and Data Acquisition (5/5) by Dr. Brian Petersen (CERN) from 11:00 to 12:00 at CERN ( Bldg. 222-R-001 - Filtration Plant )

  20. Regular nanofabrics in emerging technologies

    CERN Document Server

    Jamaa, M Haykel Ben

    2011-01-01

    ""Regular Nanofabrics in Emerging Technologies"" gives a deep insight into both fabrication and design aspects of emerging semiconductor technologies, that represent potential candidates for the post-CMOS era. Its approach is unique, across different fields, and it offers a synergetic view for a public of different communities ranging from technologists, to circuit designers, and computer scientists. The book presents two technologies as potential candidates for future semiconductor devices and systems and it shows how fabrication issues can be addressed at the design level and vice versa. The

  1. Gevrey regularity of the periodic gKdV equation

    Science.gov (United States)

    Hannah, Heather; Himonas, A. Alexandrou; Petronilho, Gerson

    2011-03-01

    Using the multilinear estimates, which were derived for proving well-posedness of the generalized Korteweg-de Vries (gKdV) equation, it is shown that if the initial data belongs to Gevrey space G, σ⩾1, in the space variable then the solution to the corresponding Cauchy problem for gKdV belongs also to G in the space variable. Moreover, the solution is not necessarily G in the time variable. However, it belongs to G3σ near 0. When σ=1 these are analytic regularity results for gKdV.

  2. Mathematical Modeling the Geometric Regularity in Proteus Mirabilis Colonies

    Science.gov (United States)

    Zhang, Bin; Jiang, Yi; Minsu Kim Collaboration

    Proteus Mirabilis colony exhibits striking spatiotemporal regularity, with concentric ring patterns with alternative high and low bacteria density in space, and periodicity for repetition process of growth and swarm in time. We present a simple mathematical model to explain the spatiotemporal regularity of P. Mirabilis colonies. We study a one-dimensional system. Using a reaction-diffusion model with thresholds in cell density and nutrient concentration, we recreated periodic growth and spread patterns, suggesting that the nutrient constraint and cell density regulation might be sufficient to explain the spatiotemporal periodicity in P. Mirabilis colonies. We further verify this result using a cell based model.

  3. A Simpler Approach to Coefficient Regularized Support Vector Machines Regression

    Directory of Open Access Journals (Sweden)

    Hongzhi Tong

    2014-01-01

    Full Text Available We consider a kind of support vector machines regression (SVMR algorithms associated with lq  (1≤q<∞ coefficient-based regularization and data-dependent hypothesis space. Compared with former literature, we provide here a simpler convergence analysis for those algorithms. The novelty of our analysis lies in the estimation of the hypothesis error, which is implemented by setting a stepping stone between the coefficient regularized SVMR and the classical SVMR. An explicit learning rate is then derived under very mild conditions.

  4. One-dimensional QCD in thimble regularization

    Science.gov (United States)

    Di Renzo, F.; Eruzzi, G.

    2018-01-01

    QCD in 0 +1 dimensions is numerically solved via thimble regularization. In the context of this toy model, a general formalism is presented for S U (N ) theories. The sign problem that the theory displays is a genuine one, stemming from a (quark) chemical potential. Three stationary points are present in the original (real) domain of integration, so that contributions from all the thimbles associated to them are to be taken into account: we show how semiclassical computations can provide hints on the regions of parameter space where this is absolutely crucial. Known analytical results for the chiral condensate and the Polyakov loop are correctly reproduced: this is in particular trivial at high values of the number of flavors Nf. In this regime we notice that the single thimble dominance scenario takes place (the dominant thimble is the one associated to the identity). At low values of Nf computations can be more difficult. It is important to stress that this is not at all a consequence of the original sign problem (not even via the residual phase). The latter is always under control, while accidental, delicate cancelations of contributions coming from different thimbles can be in place in (restricted) regions of the parameter space.

  5. Regularity of Dual Gabor Windows

    Directory of Open Access Journals (Sweden)

    Ole Christensen

    2013-01-01

    Full Text Available We present a construction of dual windows associated with Gabor frames with compactly supported windows. The size of the support of the dual windows is comparable to that of the given window. Under certain conditions, we prove that there exist dual windows with higher regularity than the canonical dual window. On the other hand, there are cases where no differentiable dual window exists, even in the overcomplete case. As a special case of our results, we show that there exists a common smooth dual window for an interesting class of Gabor frames. In particular, for any value of K∈ℕ, there is a smooth function h which simultaneously is a dual window for all B-spline generated Gabor frames {EmbTnBN(x/2}m,n∈ℕ for B-splines BN of order N=1,…,2K+1 with a fixed and sufficiently small value of b.

  6. Bayesian regularization of neural networks.

    Science.gov (United States)

    Burden, Frank; Winkler, Dave

    2008-01-01

    Bayesian regularized artificial neural networks (BRANNs) are more robust than standard back-propagation nets and can reduce or eliminate the need for lengthy cross-validation. Bayesian regularization is a mathematical process that converts a nonlinear regression into a "well-posed" statistical problem in the manner of a ridge regression. The advantage of BRANNs is that the models are robust and the validation process, which scales as O(N2) in normal regression methods, such as back propagation, is unnecessary. These networks provide solutions to a number of problems that arise in QSAR modeling, such as choice of model, robustness of model, choice of validation set, size of validation effort, and optimization of network architecture. They are difficult to overtrain, since evidence procedures provide an objective Bayesian criterion for stopping training. They are also difficult to overfit, because the BRANN calculates and trains on a number of effective network parameters or weights, effectively turning off those that are not relevant. This effective number is usually considerably smaller than the number of weights in a standard fully connected back-propagation neural net. Automatic relevance determination (ARD) of the input variables can be used with BRANNs, and this allows the network to "estimate" the importance of each input. The ARD method ensures that irrelevant or highly correlated indices used in the modeling are neglected as well as showing which are the most important variables for modeling the activity data. This chapter outlines the equations that define the BRANN method plus a flowchart for producing a BRANN-QSAR model. Some results of the use of BRANNs on a number of data sets are illustrated and compared with other linear and nonlinear models.

  7. Generalization performance of regularized neural network models

    DEFF Research Database (Denmark)

    Larsen, Jan; Hansen, Lars Kai

    1994-01-01

    Architecture optimization is a fundamental problem of neural network modeling. The optimal architecture is defined as the one which minimizes the generalization error. This paper addresses estimation of the generalization performance of regularized, complete neural network models. Regularization...

  8. EXPRESSÃO REGULAR NUMÉRICA

    Directory of Open Access Journals (Sweden)

    Bruno Vier Hoffmeister

    2014-06-01

    Full Text Available This article defines the formal definition of the computer program language Numeric Regular Expression. A language concept inspired by Regular Expression syntax, applying your power and flexibility to numeric chains are describe.

  9. Academic Training Lecture Regular Programme

    CERN Multimedia

    2012-01-01

    AMS_02 Particle Physics Detector Technologies Orbiting the Earth (1/2), by Corrado Gargiulo (CERN).   Thursday, April 19, 2012 from 11:00 to 12:30 (Europe/Zurich) at CERN ( 4-3-006 - TH Conference Room ) AMS-02 has taken the high performance technologies used in particle physics and implemented them for use in low Earth orbit. Safety aspects for the Space Shuttle flight, that carried AMS_02 to the International Space Station, Space environment and inaccessibility during the life of AMS_02 are some of the aspects which have driven the design of the experiment. The technical challenges to build such a detector have been surmounted through the close collaboration amongst the AMS scientists and industries around the world. Their efforts have resulted in the development of new technologies and higher standards of precision.

  10. Network estimation in State Space Models with L1-regularization ...

    African Journals Online (AJOL)

    Microarray technologies and related methods coupled with appropriate mathematical and statistical models have made it possible to identify dynamic regulatory networks by measuring time course expression levels of many genes simultaneously. However one of the challenges is the high-dimensional nature of such data ...

  11. Split Dimensional Regularization for the Temporal Gauge

    OpenAIRE

    Chen, Yaw-Hwang; Hsieh, Ron-Jou; Lin, Chilong

    1996-01-01

    A split dimensional regularization, which was introduced for the Coulomb gauge by Leibbrandt and Williams, is used to regularize the spurious singularities of Yang-Mills theory in the temporal gauge. Typical one-loop split dimensionally regularized temporal gauge integrals, and hence the renormalization structure of the theory are shown to be the same as those calculated with some nonprincipal-value prescriptions.

  12. Supervised scale-regularized linear convolutionary filters

    DEFF Research Database (Denmark)

    Loog, Marco; Lauze, Francois Bernard

    2017-01-01

    benefit from some form of regularization and, secondly, arguing that the problem of scale has not been taken care of in a very satis- factory manner, we come to a combined resolution of both of these shortcomings by proposing a technique that we coin scale regularization. This regularization problem can...

  13. SOCAL_TRANSECTS_ST - Short-Term Shoreline Change Rates for Southern California Generated at a 50m Transect Spacing, 1971-1998

    Data.gov (United States)

    U.S. Geological Survey, Department of the Interior — Rates of long-term and short-term shoreline change were generated in a GIS using the Digital Shoreline Analysis System (DSAS) version 3.0; An ArcGIS extension for...

  14. Regularity of minimal and almost minimal sets and cones : J. Taylor's theorem for beginners

    OpenAIRE

    David, Guy

    2012-01-01

    Notes for lectures that were given in the Séminaire de Mathématiques Supérieures (on metric spaces and transport) , Montréal, 2011; We discuss various settings for the Plateau problem, a proof of J. Taylor's regularity theorem for $2$-dimensional almost minimal sets, some applications, and potential extensions of regularity results to the boundary.

  15. Space Robotics

    Directory of Open Access Journals (Sweden)

    Alex Ellery

    2004-09-01

    Full Text Available In this second of three short papers, I introduce some of the basic concepts of space robotics with an emphasis on some specific challenging areas of research that are peculiar to the application of robotics to space infrastructure development. The style of these short papers is pedagogical and the concepts in this paper are developed from fundamental manipulator robotics. This second paper considers the application of space manipulators to on-orbit servicing (OOS, an application which has considerable commercial application. I provide some background to the notion of robotic on-orbit servicing and explore how manipulator control algorithms may be modified to accommodate space manipulators which operate in the micro-gravity of space.

  16. Slimming and regularization of cozero maps

    Directory of Open Access Journals (Sweden)

    Mohamad Mehdi Ebrahimi

    2017-01-01

    Full Text Available Cozero maps are generalized forms of cozero elements. Two particular cases of cozero maps, slim and regular cozero maps, are significant. In this paper we present methods to construct slim and regular cozero maps from a given cozero map. The construction of the slim and the regular cozero map from a cozero map are called slimming and regularization of the cozero map, respectively. Also, we prove that the slimming and regularization create reflector functors, and so we may say that they are the best method of constructing slim and regular cozero maps, in the sense of category theory. Finally, we give slim regularization for a cozero map c:M→L in the general case where A is not a Q-algebra. We use the ring and module of fractions, in this construction process.

  17. Constrained H1-regularization schemes for diffeomorphic image registration

    Science.gov (United States)

    Mang, Andreas; Biros, George

    2017-01-01

    We propose regularization schemes for deformable registration and efficient algorithms for their numerical approximation. We treat image registration as a variational optimal control problem. The deformation map is parametrized by its velocity. Tikhonov regularization ensures well-posedness. Our scheme augments standard smoothness regularization operators based on H1- and H2-seminorms with a constraint on the divergence of the velocity field, which resembles variational formulations for Stokes incompressible flows. In our formulation, we invert for a stationary velocity field and a mass source map. This allows us to explicitly control the compressibility of the deformation map and by that the determinant of the deformation gradient. We also introduce a new regularization scheme that allows us to control shear. We use a globalized, preconditioned, matrix-free, reduced space (Gauss–)Newton–Krylov scheme for numerical optimization. We exploit variable elimination techniques to reduce the number of unknowns of our system; we only iterate on the reduced space of the velocity field. Our current implementation is limited to the two-dimensional case. The numerical experiments demonstrate that we can control the determinant of the deformation gradient without compromising registration quality. This additional control allows us to avoid oversmoothing of the deformation map. We also demonstrate that we can promote or penalize shear whilst controlling the determinant of the deformation gradient. PMID:29075361

  18. Information fusion in regularized inversion of tomographic pumping tests

    Science.gov (United States)

    Bohling, G.C.; ,

    2008-01-01

    In this chapter we investigate a simple approach to incorporating geophysical information into the analysis of tomographic pumping tests for characterization of the hydraulic conductivity (K) field in an aquifer. A number of authors have suggested a tomographic approach to the analysis of hydraulic tests in aquifers - essentially simultaneous analysis of multiple tests or stresses on the flow system - in order to improve the resolution of the estimated parameter fields. However, even with a large amount of hydraulic data in hand, the inverse problem is still plagued by non-uniqueness and ill-conditioning and the parameter space for the inversion needs to be constrained in some sensible fashion in order to obtain plausible estimates of aquifer properties. For seismic and radar tomography problems, the parameter space is often constrained through the application of regularization terms that impose penalties on deviations of the estimated parameters from a prior or background model, with the tradeoff between data fit and model norm explored through systematic analysis of results for different levels of weighting on the regularization terms. In this study we apply systematic regularized inversion to analysis of tomographic pumping tests in an alluvial aquifer, taking advantage of the steady-shape flow regime exhibited in these tests to expedite the inversion process. In addition, we explore the possibility of incorporating geophysical information into the inversion through a regularization term relating the estimated K distribution to ground penetrating radar velocity and attenuation distributions through a smoothing spline model. ?? 2008 Springer-Verlag Berlin Heidelberg.

  19. Partial Regularity for Holonomic Minimisers of Quasiconvex Functionals

    Science.gov (United States)

    Hopper, Christopher P.

    2016-10-01

    We prove partial regularity for local minimisers of certain strictly quasiconvex integral functionals, over a class of Sobolev mappings into a compact Riemannian manifold, to which such mappings are said to be holonomically constrained. Our approach uses the lifting of Sobolev mappings to the universal covering space, the connectedness of the covering space, an application of Ekeland's variational principle and a certain tangential A-harmonic approximation lemma obtained directly via a Lipschitz approximation argument. This allows regularity to be established directly on the level of the gradient. Several applications to variational problems in condensed matter physics with broken symmetries are also discussed, in particular those concerning the superfluidity of liquid helium-3 and nematic liquid crystals.

  20. Regularity problem for quasilinear elliptic and parabolic systems

    CERN Document Server

    Koshelev, Alexander

    1995-01-01

    The smoothness of solutions for quasilinear systems is one of the most important problems in modern mathematical physics. This book deals with regular or strong solutions for general quasilinear second-order elliptic and parabolic systems. Applications in solid mechanics, hydrodynamics, elasticity and plasticity are described. The results presented are based on two main ideas: the universal iterative method, and explicit, sometimes sharp, coercivity estimates in weighted spaces. Readers are assumed to have a standard background in analysis and PDEs.

  1. Geometry of Optimization and Implicit Regularization in Deep Learning

    OpenAIRE

    Neyshabur, Behnam; Tomioka, Ryota; Salakhutdinov, Ruslan; Srebro, Nathan

    2017-01-01

    We argue that the optimization plays a crucial role in generalization of deep learning models through implicit regularization. We do this by demonstrating that generalization ability is not controlled by network size but rather by some other implicit control. We then demonstrate how changing the empirical optimization procedure can improve generalization, even if actual optimization quality is not affected. We do so by studying the geometry of the parameter space of deep networks, and devisin...

  2. A generalized regular form for multivariable sliding mode control

    Directory of Open Access Journals (Sweden)

    W. Perruquetti

    2001-01-01

    Full Text Available The paper shows how to compute a diffeomorphic state space transformation in order to put the initial mutivariable nonlinear model into an appropriate regular form. This form is an extension of the one proposed by Lukyanov and Utkin [9], and constitutes a guidance for a “natural” choice of the sliding surface. Then stabilization is achieved via a sliding mode strategy. In order to overcome the chattering phenomenon, a new nonlinear gain is introduced.

  3. Regularity extraction from non-adjacent sounds.

    Science.gov (United States)

    Bendixen, Alexandra; Schröger, Erich; Ritter, Walter; Winkler, István

    2012-01-01

    The regular behavior of sound sources helps us to make sense of the auditory environment. Regular patterns may, for instance, convey information on the identity of a sound source (such as the acoustic signature of a train moving on the rails). Yet typically, this signature overlaps in time with signals emitted from other sound sources. It is generally assumed that auditory regularity extraction cannot operate upon this mixture of signals because it only finds regularities between adjacent sounds. In this view, the auditory environment would be grouped into separate entities by means of readily available acoustic cues such as separation in frequency and location. Regularity extraction processes would then operate upon the resulting groups. Our new experimental evidence challenges this view. We presented two interleaved sound sequences which overlapped in frequency range and shared all acoustic parameters. The sequences only differed in their underlying regular patterns. We inserted deviants into one of the sequences to probe whether the regularity was extracted. In the first experiment, we found that these deviants elicited the mismatch negativity (MMN) component. Thus the auditory system was able to find the regularity between the non-adjacent sounds. Regularity extraction was not influenced by sequence cohesiveness as manipulated by the relative duration of tones and silent inter-tone-intervals. In the second experiment, we showed that a regularity connecting non-adjacent sounds was discovered only when the intervening sequence also contained a regular pattern, but not when the intervening sounds were randomly varying. This suggests that separate regular patterns are available to the auditory system as a cue for identifying signals coming from distinct sound sources. Thus auditory regularity extraction is not necessarily confined to a processing stage after initial sound grouping, but may precede grouping when other acoustic cues are unavailable.

  4. Regularity of spectral fractional Dirichlet and Neumann problems

    DEFF Research Database (Denmark)

    Grubb, Gerd

    2016-01-01

    Consider the fractional powers and of the Dirichlet and Neumann realizations of a second-order strongly elliptic differential operator A on a smooth bounded subset Ω of . Recalling the results on complex powers and complex interpolation of domains of elliptic boundary value problems by Seeley...... in the 1970's, we demonstrate how they imply regularity properties in full scales of -Sobolev spaces and Hölder spaces, for the solutions of the associated equations. Extensions to nonsmooth situations for low values of s are derived by use of recent results on -calculus. We also include an overview...... of the various Dirichlet- and Neumann-type boundary problems associated with the fractional Laplacian....

  5. Slimming and regularization of cozero maps

    Directory of Open Access Journals (Sweden)

    Mohamad Mehdi Ebrahimi

    2017-01-01

    Full Text Available Cozero maps are generalized forms of cozero elements. Two particular cases of cozero maps, slim and regular cozero maps, are significant. In this paper we present methods to construct slim and regular cozero maps from a given  cozero map. The construction of the slim and the regular cozero map from a cozero map are called slimming and regularization of the cozero map, respectively. Also, we prove that the slimming and regularization create reflector functors, and so we may say that they are the best method of constructing slim and regular cozero maps, in the sense of category theory. Finally, we give slim regularizationfor a cozero map $c:Mrightarrow L$ in the general case where $A$is not a ${Bbb Q}$-algebra. We use the ring and module offractions, in this construction process.

  6. Short tunnels.

    NARCIS (Netherlands)

    Schreuder, D.A.

    1965-01-01

    Before dealing with the question of lighting short tunnels, it is necessary define what is meant by a tunnel and when it should be called 'short'. Confined to motorized road traffic the following is the most apt definition of a tunnel: every form of roofing-over a road section, irrespective of it

  7. The regularization of Old English weak verbs

    OpenAIRE

    Marta Tío Sáenz

    2015-01-01

    [EN] This article deals with the regularization of non-standard spellings of the verbal forms extracted from a corpus. It addresses the question of what the limits of regularization are when lemmatizing Old English weak verbs. The purpose of such regularization, also known as normalization, is to carry out lexicological analysis or lexicographical work. The analysis concentrates on weak verbs from the second class and draws on the lexical database of Old English Nerthus, which has incorporate...

  8. Symplectic regularization of binary collisions in the circular N+2 Sitnikov problem

    Energy Technology Data Exchange (ETDEWEB)

    Jimenez-Perez, Hugo [IMCCE, Observatoire de Paris, 77 av. Denfert-Rochereau, 75014 Paris (France); Lacomba, Ernesto A, E-mail: jimenez@imcce.fr, E-mail: lace@xanum.uam.mx [Department of Mathematics, Universidad Autonoma Metropolitana, San Rafael Atlixco 186, C.P. 09430, Iztapalapa, Mexico City (Mexico)

    2011-07-01

    We present a brief overview of the regularizing transformations of the Kepler problem and we relate the Euler transformation with the symplectic structure of the phase space of the N-body problem. We show that any particular solution of the N-body problem where two bodies have rectilinear dynamics can be regularized by a linear symplectic transformation and the inclusion of the Euler transformation into the group of symplectic local diffeomorphisms over the phase space. As an application we regularize a particular configuration of the restricted circular N+2 body problem.

  9. Iterative regularization with minimum-residual methods

    DEFF Research Database (Denmark)

    Jensen, Toke Koldborg; Hansen, Per Christian

    2006-01-01

    subspaces. We provide a combination of theory and numerical examples, and our analysis confirms the experience that MINRES and MR-II can work as general regularization methods. We also demonstrate theoretically and experimentally that the same is not true, in general, for GMRES and RRGMRES - their success......We study the regularization properties of iterative minimum-residual methods applied to discrete ill-posed problems. In these methods, the projection onto the underlying Krylov subspace acts as a regularizer, and the emphasis of this work is on the role played by the basis vectors of these Krylov...... as regularization methods is highly problem dependent....

  10. Iterative Regularization with Minimum-Residual Methods

    DEFF Research Database (Denmark)

    Jensen, Toke Koldborg; Hansen, Per Christian

    2007-01-01

    subspaces. We provide a combination of theory and numerical examples, and our analysis confirms the experience that MINRES and MR-II can work as general regularization methods. We also demonstrate theoretically and experimentally that the same is not true, in general, for GMRES and RRGMRES their success......We study the regularization properties of iterative minimum-residual methods applied to discrete ill-posed problems. In these methods, the projection onto the underlying Krylov subspace acts as a regularizer, and the emphasis of this work is on the role played by the basis vectors of these Krylov...... as regularization methods is highly problem dependent....

  11. Bit-coded regular expression parsing

    DEFF Research Database (Denmark)

    Nielsen, Lasse; Henglein, Fritz

    2011-01-01

    Regular expression parsing is the problem of producing a parse tree of a string for a given regular expression. We show that a compact bit representation of a parse tree can be produced efficiently, in time linear in the product of input string size and regular expression size, by simplifying...... the DFA-based parsing algorithm due to Dub ´e and Feeley to emit the bits of the bit representation without explicitly materializing the parse tree itself. We furthermore show that Frisch and Cardelli’s greedy regular expression parsing algorithm can be straightforwardly modified to produce bit codings...

  12. Adaptive regularization using the entire solution surface.

    Science.gov (United States)

    Wu, S; Shen, X; Geyer, C J

    2009-09-01

    Several sparseness penalties have been suggested for delivery of good predictive performance in automatic variable selection within the framework of regularization. All assume that the true model is sparse. We propose a penalty, a convex combination of the L1- and L∞-norms, that adapts to a variety of situations including sparseness and nonsparseness, grouping and nongrouping. The proposed penalty performs grouping and adaptive regularization. In addition, we introduce a novel homotopy algorithm utilizing subgradients for developing regularization solution surfaces involving multiple regularizers. This permits efficient computation and adaptive tuning. Numerical experiments are conducted using simulation. In simulated and real examples, the proposed penalty compares well against popular alternatives.

  13. A regularized stationary mean-field game

    KAUST Repository

    Yang, Xianjin

    2016-04-19

    In the thesis, we discuss the existence and numerical approximations of solutions of a regularized mean-field game with a low-order regularization. In the first part, we prove a priori estimates and use the continuation method to obtain the existence of a solution with a positive density. Finally, we introduce the monotone flow method and solve the system numerically.

  14. Regular Event Structures and Finite Petri Nets

    DEFF Research Database (Denmark)

    Nielsen, M.; Thiagarajan, P.S.

    2002-01-01

    We present the notion of regular event structures and conjecture that they correspond exactly to finite 1-safe Petri nets. We show that the conjecture holds for the conflict-free case. Even in this restricted setting, the proof is non-trivial and involves a natural subclass of regular event...

  15. On infinite regular and chiral maps

    OpenAIRE

    Arredondo, John A.; Valdez, Camilo Ramírez y Ferrán

    2015-01-01

    We prove that infinite regular and chiral maps take place on surfaces with at most one end. Moreover, we prove that an infinite regular or chiral map on an orientable surface with genus can only be realized on the Loch Ness monster, that is, the topological surface of infinite genus with one end.

  16. Nonlocal Regularized Algebraic Reconstruction Techniques for MRI: An Experimental Study

    Directory of Open Access Journals (Sweden)

    Xin Li

    2013-01-01

    Full Text Available We attempt to revitalize researchers' interest in algebraic reconstruction techniques (ART by expanding their capabilities and demonstrating their potential in speeding up the process of MRI acquisition. Using a continuous-to-discrete model, we experimentally study the application of ART into MRI reconstruction which unifies previous nonuniform-fast-Fourier-transform- (NUFFT- based and gridding-based approaches. Under the framework of ART, we advocate the use of nonlocal regularization techniques which are leveraged from our previous research on modeling photographic images. It is experimentally shown that nonlocal regularization ART (NR-ART can often outperform their local counterparts in terms of both subjective and objective qualities of reconstructed images. On one real-world k-space data set, we find that nonlocal regularization can achieve satisfactory reconstruction from as few as one-third of samples. We also address an issue related to image reconstruction from real-world k-space data but overlooked in the open literature: the consistency of reconstructed images across different resolutions. A resolution-consistent extension of NR-ART is developed and shown to effectively suppress the artifacts arising from frequency extrapolation. Both source codes and experimental results of this work are made fully reproducible.

  17. Elementary Particle Spectroscopy in Regular Solid Rewrite

    Science.gov (United States)

    Trell, Erik

    2008-10-01

    The Nilpotent Universal Computer Rewrite System (NUCRS) has operationalized the radical ontological dilemma of Nothing at All versus Anything at All down to the ground recursive syntax and principal mathematical realisation of this categorical dichotomy as such and so governing all its sui generis modalities, leading to fulfilment of their individual terms and compass when the respective choice sequence operations are brought to closure. Focussing on the general grammar, NUCRS by pure logic and its algebraic notations hence bootstraps Quantum Mechanics, aware that it "is the likely keystone of a fundamental computational foundation" also for e.g. physics, molecular biology and neuroscience. The present work deals with classical geometry where morphology is the modality, and ventures that the ancient regular solids are its specific rewrite system, in effect extensively anticipating the detailed elementary particle spectroscopy, and further on to essential structures at large both over the inorganic and organic realms. The geodetic antipode to Nothing is extension, with natural eigenvector the endless straight line which when deployed according to the NUCRS as well as Plotelemeian topographic prescriptions forms a real three-dimensional eigenspace with cubical eigenelements where observed quark-skewed quantum-chromodynamical particle events self-generate as an Aristotelean phase transition between the straight and round extremes of absolute endlessness under the symmetry- and gauge-preserving, canonical coset decomposition SO(3)×O(5) of Lie algebra SU(3). The cubical eigen-space and eigen-elements are the parental state and frame, and the other solids are a range of transition matrix elements and portions adapting to the spherical root vector symmetries and so reproducibly reproducing the elementary particle spectroscopy, including a modular, truncated octahedron nano-composition of the Electron which piecemeal enter into molecular structures or compressed to each

  18. Regularity of C*-algebras and central sequence algebras

    DEFF Research Database (Denmark)

    Christensen, Martin S.

    The main topic of this thesis is regularity properties of C*-algebras and how these regularity properties are re ected in their associated central sequence algebras. The thesis consists of an introduction followed by four papers [A], [B], [C], [D]. In [A], we show that for the class of simple...... Villadsen algebra of either the rst type with seed space a nite dimensional CW complex, or the second type, tensorial absorption of the Jiang-Su algebra is characterized by the absence of characters on the central sequence algebra. Additionally, in a joint appendix with Joan Bosa, we show that the Villadsen...... algebra of the second type with innite stable rank fails the corona factorization property. In [B], we consider the class of separable C*-algebras which do not admit characters on their central sequence algebra, and show that it has nice permanence properties. We also introduce a new divisibility property...

  19. A two-way regularization method for MEG source reconstruction

    KAUST Repository

    Tian, Tian Siva

    2012-09-01

    The MEG inverse problem refers to the reconstruction of the neural activity of the brain from magnetoencephalography (MEG) measurements. We propose a two-way regularization (TWR) method to solve the MEG inverse problem under the assumptions that only a small number of locations in space are responsible for the measured signals (focality), and each source time course is smooth in time (smoothness). The focality and smoothness of the reconstructed signals are ensured respectively by imposing a sparsity-inducing penalty and a roughness penalty in the data fitting criterion. A two-stage algorithm is developed for fast computation, where a raw estimate of the source time course is obtained in the first stage and then refined in the second stage by the two-way regularization. The proposed method is shown to be effective on both synthetic and real-world examples. © Institute of Mathematical Statistics, 2012.

  20. Global Regularity for a Class of Generalized Magnetohydrodynamic Equations

    Science.gov (United States)

    Wu, Jiahong

    2011-06-01

    It remains unknown whether or not smooth solutions of the 3D incompressible MHD equations can develop finite-time singularities. One major difficulty is due to the fact that the dissipation given by the Laplacian operator is insufficient to control the nonlinearity and for this reason the 3D MHD equations are sometimes regarded as "supercritical". This paper presents a global regularity result for the generalized MHD equations with a class of hyperdissipation. This result is inspired by a recent work of Terence Tao on a generalized Navier-Stokes equations (T. Tao, Global regularity for a logarithmically supercritical hyperdissipative Navier-Stokes equations, arXiv: 0906.3070v3 [math.AP] 20 June 2009), but the result for the MHD equations is not completely parallel to that for the Navier-Stokes equations. Besov space techniques are employed to establish the result for the MHD equations.

  1. Comment on "Construction of regular black holes in general relativity"

    Science.gov (United States)

    Bronnikov, Kirill A.

    2017-12-01

    We claim that the paper by Zhong-Ying Fan and Xiaobao Wang on nonlinear electrodynamics coupled to general relativity [Phys. Rev. D 94,124027 (2016)], although correct in general, in some respects repeats previously obtained results without giving proper references. There is also an important point missing in this paper, which is necessary for understanding the physics of the system: in solutions with an electric charge, a regular center requires a non-Maxwell behavior of Lagrangian function L (f ) , (f =Fμ νFμ ν) at small f . Therefore, in all electric regular black hole solutions with a Reissner-Nordström asymptotic, the Lagrangian L (f ) is different in different parts of space, and the electromagnetic field behaves in a singular way at surfaces where L (f ) suffers branching.

  2. Compressing Regular Expressions' DFA Table by Matrix Decomposition

    Science.gov (United States)

    Liu, Yanbing; Guo, Li; Liu, Ping; Tan, Jianlong

    Recently regular expression matching has become a research focus as a result of the urgent demand for Deep Packet Inspection (DPI) in many network security systems. Deterministic Finite Automaton (DFA), which recognizes a set of regular expressions, is usually adopted to cater to the need for real-time processing of network traffic. However, the huge memory usage of DFA prevents it from being applied even on a medium-sized pattern set. In this article, we propose a matrix decomposition method for DFA table compression. The basic idea of the method is to decompose a DFA table into the sum of a row vector, a column vector and a sparse matrix, all of which cost very little space. Experiments on typical rule sets show that the proposed method significantly reduces the memory usage and still runs at fast searching speed.

  3. Structured Sparsity Regularization Approach to the EEG Inverse Problem

    DEFF Research Database (Denmark)

    Montoya-Martinez, Jair; Artes-Rodriguez, Antonio; Hansen, Lars Kai

    2012-01-01

    Localization of brain activity involves solving the EEG inverse problem, which is an undetermined ill-posed problem. We propose a novel approach consisting in estimating, using structured sparsity regularization techniques, the Brain Electrical Sources (BES) matrix directly in the spatio......-temporal source space. We use proximal splitting optimization methods, which are efficient optimization techniques, with good convergence rates and with the ability to handle large nonsmooth convex problems, which is the typical scenario in the EEG inverse problem. We have evaluated our approach under a simulated...... scenario, consisting in estimating a synthetic BES matrix with 5124 sources. We report results using ℓ1 (LASSO), ℓ1/ℓ2 (Group LASSO) and ℓ1 + ℓ1/ℓ2 (Sparse Group LASSO) regularizers....

  4. Regular Simple Queues of Protein Contact Maps.

    Science.gov (United States)

    Guo, Qiang-Hui; Sun, Lisa Hui; Wang, Jian

    2017-01-01

    A protein fold can be viewed as a self-avoiding walk in certain lattice model, and its contact map is a graph that represents the patterns of contacts in the fold. Goldman, Istrail, and Papadimitriou showed that a contact map in the 2D square lattice can be decomposed into at most two stacks and one queue. In the terminology of combinatorics, stacks and queues are noncrossing and nonnesting partitions, respectively. In this paper, we are concerned with 2-regular and 3-regular simple queues, for which the degree of each vertex is at most one and the arc lengths are at least 2 and 3, respectively. We show that 2-regular simple queues are in one-to-one correspondence with hill-free Motzkin paths, which have been enumerated by Barcucci, Pergola, Pinzani, and Rinaldi by using the Enumerating Combinatorial Objects method. We derive a recurrence relation for the generating function of Motzkin paths with [Formula: see text] peaks at level i, which reduces to the generating function for hill-free Motzkin paths. Moreover, we show that 3-regular simple queues are in one-to-one correspondence with Motzkin paths avoiding certain patterns. Then we obtain a formula for the generating function of 3-regular simple queues. Asymptotic formulas for 2-regular and 3-regular simple queues are derived based on the generating functions.

  5. Multiple graph regularized protein domain ranking

    Directory of Open Access Journals (Sweden)

    Wang Jim

    2012-11-01

    Full Text Available Abstract Background Protein domain ranking is a fundamental task in structural biology. Most protein domain ranking methods rely on the pairwise comparison of protein domains while neglecting the global manifold structure of the protein domain database. Recently, graph regularized ranking that exploits the global structure of the graph defined by the pairwise similarities has been proposed. However, the existing graph regularized ranking methods are very sensitive to the choice of the graph model and parameters, and this remains a difficult problem for most of the protein domain ranking methods. Results To tackle this problem, we have developed the Multiple Graph regularized Ranking algorithm, MultiG-Rank. Instead of using a single graph to regularize the ranking scores, MultiG-Rank approximates the intrinsic manifold of protein domain distribution by combining multiple initial graphs for the regularization. Graph weights are learned with ranking scores jointly and automatically, by alternately minimizing an objective function in an iterative algorithm. Experimental results on a subset of the ASTRAL SCOP protein domain database demonstrate that MultiG-Rank achieves a better ranking performance than single graph regularized ranking methods and pairwise similarity based ranking methods. Conclusion The problem of graph model and parameter selection in graph regularized protein domain ranking can be solved effectively by combining multiple graphs. This aspect of generalization introduces a new frontier in applying multiple graphs to solving protein domain ranking applications.

  6. Multiple graph regularized protein domain ranking

    KAUST Repository

    Wang, Jim Jing-Yan

    2012-11-19

    Background: Protein domain ranking is a fundamental task in structural biology. Most protein domain ranking methods rely on the pairwise comparison of protein domains while neglecting the global manifold structure of the protein domain database. Recently, graph regularized ranking that exploits the global structure of the graph defined by the pairwise similarities has been proposed. However, the existing graph regularized ranking methods are very sensitive to the choice of the graph model and parameters, and this remains a difficult problem for most of the protein domain ranking methods.Results: To tackle this problem, we have developed the Multiple Graph regularized Ranking algorithm, MultiG-Rank. Instead of using a single graph to regularize the ranking scores, MultiG-Rank approximates the intrinsic manifold of protein domain distribution by combining multiple initial graphs for the regularization. Graph weights are learned with ranking scores jointly and automatically, by alternately minimizing an objective function in an iterative algorithm. Experimental results on a subset of the ASTRAL SCOP protein domain database demonstrate that MultiG-Rank achieves a better ranking performance than single graph regularized ranking methods and pairwise similarity based ranking methods.Conclusion: The problem of graph model and parameter selection in graph regularized protein domain ranking can be solved effectively by combining multiple graphs. This aspect of generalization introduces a new frontier in applying multiple graphs to solving protein domain ranking applications. 2012 Wang et al; licensee BioMed Central Ltd.

  7. RMS envelope matching of electron beams from “zero” current to extreme space charge in a fixed lattice of short magnets

    Directory of Open Access Journals (Sweden)

    S. Bernal

    2006-06-01

    Full Text Available We present detailed calculations of RMS-envelope matching over a broad range of beam intensities for the University of Maryland Electron Ring (UMER. Containment of beams from zero current to extreme space charge, all without changing the strength of external focusing in the periodic lattice, is possible thanks to the high density of quadrupoles in UMER. In turn, the small-aspect ratio of the UMER magnets results in gradient or field profiles that are “all edges,” thus requiring special treatment when constructing accurate hard-edge models. Further, the results of matching calculations, for both symmetric and asymmetric FODO (alternating gradient schemes, are compared with calculations from simple general expressions valid in the uniform-focusing approximation of the periodic lattice. Finally, some aspects of the source-to-FODO matching calculation/optimization problem are discussed, together with sensitivity studies of the matching solutions under realistic conditions. The examples from the UMER project, which include experimental results, emphasize the practical aspects of beam envelope matching.

  8. Space Robotics

    Directory of Open Access Journals (Sweden)

    Alex Ellery

    2004-06-01

    Full Text Available In this first of three short papers, I introduce some of the basic concepts of space engineering with an emphasis on some specific challenging areas of research that are peculiar to the application of robotics to space development and exploration. The style of these short papers is pedagogical and this paper stresses the unique constraints that space application imposes. This first paper is thus a general introduction to the nature of spacecraft engineering and its application to robotic spacecraft. I consider the constraints and metrics used by spacecraft engineers in the design of spacecraft and how these constraints impose challenges to the roboticist. The following two papers consider specific robotics issues in more detail.

  9. Completeness and regularity of generalized fuzzy graphs.

    Science.gov (United States)

    Samanta, Sovan; Sarkar, Biswajit; Shin, Dongmin; Pal, Madhumangal

    2016-01-01

    Fuzzy graphs are the backbone of many real systems like networks, image, scheduling, etc. But, due to some restriction on edges, fuzzy graphs are limited to represent for some systems. Generalized fuzzy graphs are appropriate to avoid such restrictions. In this study generalized fuzzy graphs are introduced. In this study, matrix representation of generalized fuzzy graphs is described. Completeness and regularity are two important parameters of graph theory. Here, regular and complete generalized fuzzy graphs are introduced. Some properties of them are discussed. After that, effective regular graphs are exemplified.

  10. J-regular rings with injectivities

    OpenAIRE

    Shen, Liang

    2010-01-01

    A ring $R$ is called a J-regular ring if R/J(R) is von Neumann regular, where J(R) is the Jacobson radical of R. It is proved that if R is J-regular, then (i) R is right n-injective if and only if every homomorphism from an $n$-generated small right ideal of $R$ to $R_{R}$ can be extended to one from $R_{R}$ to $R_{R}$; (ii) R is right FP-injective if and only if R is right (J, R)-FP-injective. Some known results are improved.

  11. A concentration inequality for product spaces

    OpenAIRE

    Dodos, Pandelis; Kanellopoulos, Vassilis; Tyros, Konstantinos

    2014-01-01

    We prove a concentration inequality which asserts that, under some mild regularity conditions, every random variable defined on the product of sufficiently many probability spaces exhibits pseudorandom behavior.

  12. Occupational concerns associated with regular use of microscope.

    Science.gov (United States)

    Jain, Garima; Shetty, Pushparaja

    2014-08-01

    Microscope work can be strenuous both to the visual system and the musculoskeletal system. Lack of awareness or indifference towards health issues may result in microscope users becoming victim to many occupational hazards. Our objective was to understand the occupational problems associated with regular use of microscope, awareness regarding the hazards, attitude and practice of microscope users towards the problems and preventive strategies. a questionnaire based survey done on 50 professionals and technicians who used microscope regularly in pathology, microbiology, hematology and cytology laboratories. Sixty two percent of subjects declared that they were suffering from musculoskeletal problems, most common locations being neck and back. Maximum prevalence of musculoskeletal problems was noted in those using microscope for 11-15 years and for more than 30 h/week. Sixty two percent of subjects were aware of workplace ergonomics. Fifty six percent of microscope users took regular short breaks for stretching exercises and 58% took visual breaks every 15-30 min in between microscope use sessions. As many as 94% subjects reported some form of visual problem. Fourty four percent of microscope users felt stressed with long working hours on microscope. The most common occupational concerns of microscope users were musculoskeletal problems of neck and back regions, eye fatigue, aggravation of ametropia, headache, stress due to long working hours and anxiety during or after microscope use. There is an immediate need for increasing awareness about the various occupational hazards and their irreversible effects to prevent them.

  13. Regularity of optimal transport maps and applications

    CERN Document Server

    Philippis, Guido

    2013-01-01

    In this thesis, we study the regularity of optimal transport maps and its applications to the semi-geostrophic system. The first two chapters survey the known theory, in particular there is a self-contained proof of Brenier’ theorem on existence of optimal transport maps and of Caffarelli’s Theorem on Holder continuity of optimal maps. In the third and fourth chapter we start investigating Sobolev regularity of optimal transport maps, while in Chapter 5 we show how the above mentioned results allows to prove the existence of Eulerian solution to the semi-geostrophic equation. In Chapter 6 we prove partial regularity of optimal maps with respect to a generic cost functions (it is well known that in this case global regularity can not be expected). More precisely we show that if the target and source measure have smooth densities the optimal map is always smooth outside a closed set of measure zero.

  14. Mixed-norm regularization for brain decoding.

    Science.gov (United States)

    Flamary, R; Jrad, N; Phlypo, R; Congedo, M; Rakotomamonjy, A

    2014-01-01

    This work investigates the use of mixed-norm regularization for sensor selection in event-related potential (ERP) based brain-computer interfaces (BCI). The classification problem is cast as a discriminative optimization framework where sensor selection is induced through the use of mixed-norms. This framework is extended to the multitask learning situation where several similar classification tasks related to different subjects are learned simultaneously. In this case, multitask learning helps in leveraging data scarcity issue yielding to more robust classifiers. For this purpose, we have introduced a regularizer that induces both sensor selection and classifier similarities. The different regularization approaches are compared on three ERP datasets showing the interest of mixed-norm regularization in terms of sensor selection. The multitask approaches are evaluated when a small number of learning examples are available yielding to significant performance improvements especially for subjects performing poorly.

  15. Iterative regularization method in generalized inverse beamforming

    Science.gov (United States)

    Zhang, Zhifei; Chen, Si; Xu, Zhongming; He, Yansong; Li, Shu

    2017-05-01

    Beamforming based on microphone array is a method to identify sound sources. It can visualize the sound field of the source plane and reveal interesting acoustic information. Generalized inverse beamforming (GIB) is one important branch of beamforming techniques due to its high identification accuracy and computational efficiency. However, in real testing situation, errors caused by measurement noise and configuration problems may seriously reduce the beamforming accuracy. As an inverse problem, the stability of GIB can be improved with regularization methods. We proposed a new iterative regularization method for GIB by iteratively redefining the form of regularization matrix and calculating the corresponding solution. Moreover, the new method is applied to functional beamforming and double-layer antenna beamforming respectively. Numerical simulations and experiments are implemented. The results show that the proposed regularization method leads to more robust beamforming output and higher accuracy in both the two applications.

  16. The regularization of Old English weak verbs

    Directory of Open Access Journals (Sweden)

    Marta Tío Sáenz

    2015-07-01

    Full Text Available This article deals with the regularization of non-standard spellings of the verbal forms extracted from a corpus. It addresses the question of what the limits of regularization are when lemmatizing Old English weak verbs. The purpose of such regularization, also known as normalization, is to carry out lexicological analysis or lexicographical work. The analysis concentrates on weak verbs from the second class and draws on the lexical database of Old English Nerthus, which has incorporated the texts of the Dictionary of Old English Corpus. As regards the question of the limits of normalization, the solution adopted are, in the first place, that when it is necessary to regularize, normalization is restricted to correspondences based on dialectal and diachronic variation and, secondly, that normalization has to be unidirectional.

  17. Mixed-Norm Regularization for Brain Decoding

    Directory of Open Access Journals (Sweden)

    R. Flamary

    2014-01-01

    Full Text Available This work investigates the use of mixed-norm regularization for sensor selection in event-related potential (ERP based brain-computer interfaces (BCI. The classification problem is cast as a discriminative optimization framework where sensor selection is induced through the use of mixed-norms. This framework is extended to the multitask learning situation where several similar classification tasks related to different subjects are learned simultaneously. In this case, multitask learning helps in leveraging data scarcity issue yielding to more robust classifiers. For this purpose, we have introduced a regularizer that induces both sensor selection and classifier similarities. The different regularization approaches are compared on three ERP datasets showing the interest of mixed-norm regularization in terms of sensor selection. The multitask approaches are evaluated when a small number of learning examples are available yielding to significant performance improvements especially for subjects performing poorly.

  18. Regularization of B-Spline Objects.

    Science.gov (United States)

    Xu, Guoliang; Bajaj, Chandrajit

    2011-01-01

    By a d-dimensional B-spline object (denoted as ), we mean a B-spline curve (d = 1), a B-spline surface (d = 2) or a B-spline volume (d = 3). By regularization of a B-spline object we mean the process of relocating the control points of such that they approximate an isometric map of its definition domain in certain directions and is shape preserving. In this paper we develop an efficient regularization method for , d = 1, 2, 3 based on solving weak form L(2)-gradient flows constructed from the minimization of certain regularizing energy functionals. These flows are integrated via the finite element method using B-spline basis functions. Our experimental results demonstrate that our new regularization method is very effective.

  19. On Comparison of Adaptive Regularization Methods

    DEFF Research Database (Denmark)

    Sigurdsson, Sigurdur; Larsen, Jan; Hansen, Lars Kai

    2000-01-01

    at the expense of introducing extra bias. The overall objective of adaptive regularization is to tune the amount of regularization ensuring minimal generalization error. Regularization is a supplement to direct model selection techniques like step-wise selection and one would prefer a hybrid scheme; however...... different criteria, e.g., the Bayesian evidence. The evidence expresses basically the probability of the model, which is conceptually different from generalization error; however, asymptotically for large training data sets they will converge. First the basic model definition, training and generalization......Modeling with flexible models, such as neural networks, requires careful control of the model complexity and generalization ability of the resulting model which finds expression in the ubiquitous bias-variance dilemma. Regularization is a tool for optimizing the model structure reducing variance...

  20. Regularity of Tor for weakly stable ideals

    Directory of Open Access Journals (Sweden)

    Katie Ansaldi

    2015-05-01

    Full Text Available It is proved that if I and J are weakly stable ideals in a polynomial ring R = k[x_1, . . ., x_n], with k a field, then the regularity of Tor^R_i (R/I, R/J has the expected upper bound. We also give a bound for the regularity of Ext^i_R (R/I, R for I a weakly stable ideal.

  1. Deterministic automata for extended regular expressions

    Directory of Open Access Journals (Sweden)

    Syzdykov Mirzakhmet

    2017-12-01

    Full Text Available In this work we present the algorithms to produce deterministic finite automaton (DFA for extended operators in regular expressions like intersection, subtraction and complement. The method like “overriding” of the source NFA(NFA not defined with subset construction rules is used. The past work described only the algorithm for AND-operator (or intersection of regular languages; in this paper the construction for the MINUS-operator (and complement is shown.

  2. Short Communication

    African Journals Online (AJOL)

    ... et al., 1999). The assay represents a rapid, inexpensive and simple bioassay for testing plant extracts bioactivity which in most cases correlates reasonably well with cytotoxic and anti-tumor properties. The brine shrimp lethality assay is based on the ability of the extract to show lethality in laboratory. Short Communication ...

  3. Short Report

    African Journals Online (AJOL)

    Bioline

    Short Report. Waiting time among acute abdominal emergencies in a Nigerian teaching hospital: causes of delay and consequences. N .Mbah, W. Ek. Opara and N. P. Agwu ... admitted with acute surgical abdomen are most commonly due to financial difficulties. ... private, general and primary health institutions within.

  4. SHORT COMMUNICATION

    African Journals Online (AJOL)

    Tanzania Health Research Bulletin (2005), Vol. 7, No. 2. SHORT COMMUNICATION. Palliative care in Tanzania: a needs assessment study of family caregivers in urban setting. T. NGOMA. Ocean Road Cancer Institute, PO. Box 3592 Dar es Salaam, Tanzania;. Email: ngoma@uccmail.co.tz. Tanzania, with a population of ...

  5. Short communications

    African Journals Online (AJOL)

    2015-05-23

    May 23, 2015 ... the majority of birds in one image (Fig. 2). Figure 2. Partial stack of 100+ Levant Sparrowhawks over the Mara North Conservancy, 23 February 2014. Photo: M. Mockler. Short communications. 33. Figure 1. Photographs confirming the identification of Levant Sparrowhawk. Accipiter brevipes. Photos: M.

  6. Short Comm.

    African Journals Online (AJOL)

    E-LIBRARY

    economic stability. Industrialization according to Britannica Encyclopedia is, “The process of converting to a socio-economic or development in which industry is ... and even secondary schools. Furthermore, disciplines such as Library and Information Science have over the years been. Short Comm. Information Impact:.

  7. Short Communication

    African Journals Online (AJOL)

    Nigerian Journal of Basic and Applied Science (2011), 19(2): 304-307. ISSN 0794-5698. Short Communication. Lead and Cadmium Levels of Five Commonly and Widely Consumed Leafy Vegetables in. Kano State, Nigeria. *M.I. Mohammed and ... the agreed international requirements. This is particularly important for farm ...

  8. Short communication

    African Journals Online (AJOL)

    UPuser

    Short communication. Polymorphisms of the CAST gene in the Meishan and five other pig populations in China. Q.S. Wang. 1. , Y.C. Pan. 1#. , L.B. Sun. 2 and H. Meng. 1. 1 Department of Animal Science, School of Agriculture and Biology, Shanghai Jiaotong University, Shanghai. 201101, P.R. China. 2 Shanghai Institute of ...

  9. Analytic semigroups and optimal regularity in parabolic problems

    CERN Document Server

    Lunardi, Alessandra

    2012-01-01

    The book shows how the abstract methods of analytic semigroups and evolution equations in Banach spaces can be fruitfully applied to the study of parabolic problems. Particular attention is paid to optimal regularity results in linear equations. Furthermore, these results are used to study several other problems, especially fully nonlinear ones. Owing to the new unified approach chosen, known theorems are presented from a novel perspective and new results are derived. The book is self-contained. It is addressed to PhD students and researchers interested in abstract evolution equations and in p

  10. Regularization in global sound equalization based on effort variation

    DEFF Research Database (Denmark)

    Stefanakis, Nick; Sarris, John; Jacobsen, Finn

    2009-01-01

    Sound equalization in closed spaces can be significantly improved by generating propagating waves that are naturally associated with the geometry, as, for example, plane waves in rectangular enclosures. This paper presents a control approach termed effort variation regularization based on this idea....... Effort variation equalization involves modifying the conventional cost function in sound equalization, which is based on minimizing least-squares reproduction errors, by adding a term that is proportional to the squared deviations between complex source strengths, calculated independently for the sources...

  11. Improved Approximate String Matching and Regular Expression Matching on Ziv-Lempel Compressed Texts

    DEFF Research Database (Denmark)

    Bille, Philip; Fagerberg, Rolf; Gørtz, Inge Li

    2007-01-01

    We study the approximate string matching and regular expression matching problem for the case when the text to be searched is compressed with the Ziv-Lempel adaptive dictionary compression schemes. We present a time-space trade-off that leads to algorithms improving the previously known...... complexities for both problems. In particular, we significantly improve the space bounds. In practical applications the space is likely to be a bottleneck and therefore this is of crucial importance....

  12. Regularity criteria for the Navier–Stokes equations based on one component of velocity

    Czech Academy of Sciences Publication Activity Database

    Guo, Z.; Caggio, M.; Skalák, Zdeněk

    2017-01-01

    Roč. 35, June (2017), s. 379-396 ISSN 1468-1218 R&D Projects: GA ČR GA14-02067S Grant - others:Západočeská univerzita(CZ) SGS-2016-003; National Natural Science Foundation of China (CN) 11301394 Institutional support: RVO:67985874 Keywords : Navier–Stokes equations * regularity of solutions * regularity criteria * Anisotropic Lebesgue spaces Subject RIV: BK - Fluid Dynamics Impact factor: 1.659, year: 2016

  13. Short Stature

    DEFF Research Database (Denmark)

    Christesen, Henrik Boye Thybo; Pedersen, Birgitte Tønnes; Pournara, Effie

    2016-01-01

    -scale, non-interventional, multinational study. The patient cohort consisted of 5996 short pediatric patients diagnosed with growth hormone deficiency (GHD), Turner syndrome (TS) or born small for gestational age (SGA). The proportions of children with baseline height standard deviation score (SDS) below...... clinical cut-off values (-2 SDS for GHD and TS; -2.5 SDS for SGA) based on national growth references and WHO growth standards/references were compared for children aged ....0001), TS (21%; PSGA (32%; P

  14. Channeling power across ecological systems: social regularities in community organizing.

    Science.gov (United States)

    Christens, Brian D; Inzeo, Paula Tran; Faust, Victoria

    2014-06-01

    Relational and social network perspectives provide opportunities for more holistic conceptualizations of phenomena of interest in community psychology, including power and empowerment. In this article, we apply these tools to build on multilevel frameworks of empowerment by proposing that networks of relationships between individuals constitute the connective spaces between ecological systems. Drawing on an example of a model for grassroots community organizing practiced by WISDOM—a statewide federation supporting local community organizing initiatives in Wisconsin—we identify social regularities (i.e., relational and temporal patterns) that promote empowerment and the development and exercise of social power through building and altering relational ties. Through an emphasis on listening-focused one-to-one meetings, reflection, and social analysis, WISDOM organizing initiatives construct and reinforce social regularities that develop social power in the organizing initiatives and advance psychological empowerment among participant leaders in organizing. These patterns are established by organizationally driven brokerage and mobilization of interpersonal ties, some of which span ecological systems.Hence, elements of these power-focused social regularities can be conceptualized as cross-system channels through which micro-level empowerment processes feed into macro-level exercise of social power, and vice versa. We describe examples of these channels in action, and offer recommendations for theory and design of future action research [corrected] .

  15. Regularity of high energy photon events from gamma ray bursts

    Science.gov (United States)

    Xu, Haowei; Ma, Bo-Qiang

    2018-01-01

    The effect of Quantum Gravity (QG) may bring a tiny light speed variation as v(E)=c(1‑E/ELV), where E is the photon energy and ELV is a Lorentz violation scale. A remarkable regularity was suggested in previous studies to look for the light speed variation from high energy photon events of Gamma Ray Bursts (GRBs). We provide a general analysis on the data of 25 bright GRBs observed by the Fermi Gamma-ray Space Telescope (FGST). Such method allows a completed scan over all possibilities in a more clean and impartial way without any bias compared to previous intuitive analysis. The results show that with the increase in the intrinsic energies of photons, such regularity truly emerges and gradually becomes significant. For photons with intrinsic energies higher than 40 GeV, the regularity exists at a significance of 3–5 σ with ELV=3.6× 1017 GeV determined by the GRB data.

  16. Conservative regularization of ideal hydrodynamics and magnetohydrodynamics

    Science.gov (United States)

    Thyagaraja, A.

    2010-03-01

    Inviscid, incompressible hydrodynamics and incompressible ideal magnetohydrodynamics (MHD) share many properties such as time-reversal invariance of equations, conservation laws, and certain topological features. In three dimensions, these systems may lead to singular solutions (involving vortex and current sheets). While dissipative (viscoresistive) effects can regularize the equations leading to bounded solutions to the initial-boundary value (Cauchy) problem which presumably exist uniquely, the time-reversal symmetry and associated conservation properties are certainly destroyed. The present work is analogous to (and suggested by) the Korteweg-de Vries regularization of the one-dimensional, nonlinear kinematic wave equation. Thus the regularizations applied to the original equations of hydrodynamics and ideal MHD retain conservation properties and the symmetries of the original equations. Integral invariants which generalize those known for the original systems are shown to imply bounded enstrophy. The regularization developed can also be applied to the corresponding dissipative models (such as the Navier-Stokes equations and the viscoresistive MHD equations) and may imply interesting regularity properties for the solutions of the latter as well. The models developed thus have intrinsic mathematical interest as well as possible applications to large-scale numerical simulations in systems where dissipative effects are extremely small or even absent.

  17. Regularities, Natural Patterns and Laws of Nature

    Directory of Open Access Journals (Sweden)

    Stathis Psillos

    2014-02-01

    Full Text Available  The goal of this paper is to sketch an empiricist metaphysics of laws of nature. The key idea is that there are regularities without regularity-enforcers. Differently put, there are natural laws without law-makers of a distinct metaphysical kind. This sketch will rely on the concept of a natural pattern and more significantly on the existence of a network of natural patterns in nature. The relation between a regularity and a pattern will be analysed in terms of mereology.  Here is the road map. In section 2, I will briefly discuss the relation between empiricism and metaphysics, aiming to show that an empiricist metaphysics is possible. In section 3, I will offer arguments against stronger metaphysical views of laws. Then, in section 4 I will motivate nomic objectivism. In section 5, I will address the question ‘what is a regularity?’ and will develop a novel answer to it, based on the notion of a natural pattern. In section 6, I will raise the question: ‘what is a law of nature?’, the answer to which will be: a law of nature is a regularity that is characterised by the unity of a natural pattern.

  18. Nonlinear regularization methods for ill-posed problems with piecewise constant or strongly varying solutions

    Science.gov (United States)

    Egger, H.; Leitão, A.

    2009-11-01

    In this paper we consider nonlinear ill-posed problems with piecewise constant or strongly varying solutions. A class of nonlinear regularization methods is proposed, in which smooth approximations to the Heavyside function are used to reparameterize functions in the solution space by an auxiliary function of levelset type. The analysis of the resulting regularization methods is carried out in two steps: first, we interpret the algorithms as nonlinear regularization methods for recovering the auxiliary function. This allows us to apply standard results from regularization theory, and we prove convergence of regularized approximations for the auxiliary function; additionally, we obtain the convergence of the regularized solutions, which are obtained from the auxiliary function by the nonlinear transformation. Second, we analyze the proposed methods as approximations to the levelset regularization method analyzed in [Frühauf F, Scherzer O and Leitão A 2005 Analysis of regularization methods for the solution of ill-posed problems involving discontinuous operators SIAM J. Numer. Anal. 43 767-86], which follows as a limit case when the smooth functions used for the nonlinear transformations converge to the Heavyside function. For illustration, we consider the application of the proposed algorithms to elliptic Cauchy problems, which are known to be severely ill-posed, and typically allow only for limited reconstructions. Our numerical examples demonstrate that the proposed methods provide accurate reconstructions of piecewise constant solutions also for these severely ill-posed benchmark problems.

  19. Fractional Regularization Term for Variational Image Registration

    Directory of Open Access Journals (Sweden)

    Rafael Verdú-Monedero

    2009-01-01

    Full Text Available Image registration is a widely used task of image analysis with applications in many fields. Its classical formulation and current improvements are given in the spatial domain. In this paper a regularization term based on fractional order derivatives is formulated. This term is defined and implemented in the frequency domain by translating the energy functional into the frequency domain and obtaining the Euler-Lagrange equations which minimize it. The new regularization term leads to a simple formulation and design, being applicable to higher dimensions by using the corresponding multidimensional Fourier transform. The proposed regularization term allows for a real gradual transition from a diffusion registration to a curvature registration which is best suited to some applications and it is not possible in the spatial domain. Results with 3D actual images show the validity of this approach.

  20. Stream Processing Using Grammars and Regular Expressions

    DEFF Research Database (Denmark)

    Rasmussen, Ulrik Terp

    In this dissertation we study regular expression based parsing and the use of grammatical specifications for the synthesis of fast, streaming string-processing programs. In the first part we develop two linear-time algorithms for regular expression based parsing with Perl-style greedy...... disambiguation. The first algorithm operates in two passes in a semi-streaming fashion, using a constant amount of working memory and an auxiliary tape storage which is written in the first pass and consumed by the second. The second algorithm is a single-pass and optimally streaming algorithm which outputs...... as much of the parse tree as is semantically possible based on the input prefix read so far, and resorts to buffering as many symbols as is required to resolve the next choice. Optimality is obtained by performing a PSPACE-complete pre-analysis on the regular expression. In the second part we present...

  1. Surface counterterms and regularized holographic complexity

    Science.gov (United States)

    Yang, Run-Qiu; Niu, Chao; Kim, Keun-Young

    2017-09-01

    The holographic complexity is UV divergent. As a finite complexity, we propose a "regularized complexity" by employing a similar method to the holographic renor-malization. We add codimension-two boundary counterterms which do not contain any boundary stress tensor information. It means that we subtract only non-dynamic back-ground and all the dynamic information of holographic complexity is contained in the regularized part. After showing the general counterterms for both CA and CV conjectures in holographic spacetime dimension 5 and less, we give concrete examples: the BTZ black holes and the four and five dimensional Schwarzschild AdS black holes. We propose how to obtain the counterterms in higher spacetime dimensions and show explicit formulas only for some special cases with enough symmetries. We also compute the complexity of formation by using the regularized complexity.

  2. REX XML shallow parsing with regular expressions

    CERN Document Server

    Cameron, R D

    1999-01-01

    The syntax of XML is simple enough that it is possible to parse an XML document into a list of its markup and text items using a single regular expression. Such a shallow parse of an XML document can be very useful for the construction of a variety of lightweight XML processing tools. However, complex regular expressions can be difficult to construct and even more difficult to read. Using a form of literate programming for regular expressions, this paper documents a set of XML shallow parsing expressions that can be used a basis for simple, correct, efficient, robust and language-independent XML shallow parsing. Complete shallow parser implementations of less than 50 lines each in Perl, JavaScript and Lex/Flex are also given. (0 refs).

  3. Contour Propagation With Riemannian Elasticity Regularization

    DEFF Research Database (Denmark)

    Bjerre, Troels; Hansen, Mads Fogtmann; Sapru, W.

    2011-01-01

    guided corrections. This study compares manual delineations in replanning CT scans of head-and-neck patients to automatic contour propagation using deformable registration with Riemannian regularization. The potential benefit of locally assigned regularization parameters according to tissue type...... is investigated. Materials/Methods: Planning PET-CT scans plus 2 - 4 subsequent replanning CTs for five head-and-neck cancer patients were obtained. The Gross Tumor Volume (GTV) was manually delineated on the planning CT by an experienced clinician and manually propagated by pasting the set of contours from...... the planning CT onto the rescans and correcting to reflect actual anatomical changes. For deformable registration, a free-form, multi-level, B-spline deformation model with Riemannian elasticity, penalizing non-rigid local deformations, and volumetric changes, was used. Regularization parameters was defined...

  4. Generalized inverse beamforming with optimized regularization strategy

    Science.gov (United States)

    Zavala, P. A. G.; De Roeck, W.; Janssens, K.; Arruda, J. R. F.; Sas, P.; Desmet, W.

    2011-04-01

    A promising recent development on acoustic source localization and source strength estimation is the generalized inverse beamforming, which is based on the microphone array cross-spectral matrix eigenstructure. This method presents several advantages over the conventional beamforming, including a higher accuracy on the source center localization and strength estimation even with distributed coherent sources. This paper aims to improve the strength estimation of the generalized inverse beamforming method with an automated regularization factor definition. Also in this work, a virtual target grid is introduced, and source mapping and strength estimation are obtained disregarding, as much as possible, the reflections influence. Two simple problems are used to compare the generalized inverse performance with fixed regularization factor to performance obtained using the optimized regularization strategy. Numerical and experimental data are used, and two other strength estimation methods are also evaluated for reference.

  5. Regularization and Migration Policy in Europe

    Directory of Open Access Journals (Sweden)

    Philippe de Bruycker

    2001-05-01

    Full Text Available The following pages present, in a general way, the contents of Regularization of illegal immigrants in the European Union, which includes a comparative synthesis and statistical information for each of the eight countries involved; a description of actions since the beginning of the year 2000; and a systematic analysis of the different categories of foreigners, the types of regularization carried out, and the rules that have governed these actions.In relation to regularization, the author considers the political coherence of the actions taken by the member states as well as how they relate to two ever more crucial aspects of immigration policy –the integration of legal resident immigrants and the fight againstillegal immigration in the context of a control of migratory flows.

  6. Short esophagus.

    Science.gov (United States)

    Kunio, Nicholas R; Dolan, James P; Hunter, John G

    2015-06-01

    In the presence of long-standing and severe gastroesophageal reflux disease, patients can develop various complications, including a shortened esophagus. Standard preoperative testing in these patients should include endoscopy, esophagography, and manometry, whereas the objective diagnosis of a short esophagus must be made intraoperatively following adequate mediastinal mobilization. If left untreated, it is a contributing factor to the high recurrence rate following fundoplications or repair of large hiatal hernias. A laparoscopic Collis gastroplasty combined with an antireflux procedure offers safe and effective therapy. Copyright © 2015 Elsevier Inc. All rights reserved.

  7. Regular-fat dairy and human health

    DEFF Research Database (Denmark)

    Astrup, Arne; Bradley, Beth H Rice; Brenna, J Thomas

    2016-01-01

    to disseminate, explore and discuss the state of the science on the relationship between regular fat dairy products and health, symposia were programmed by dairy industry organizations in Europe and North America at The Eurofed Lipids Congress (2014) in France, The Dairy Nutrition Annual Symposium (2014......) in Canada, The American Society for Nutrition Annual Meeting held in conjunction with Experimental Biology (2015) in the United States, and The Federation of European Nutrition Societies (2015) in Germany. This synopsis of these symposia describes the complexity of dairy fat and the effects regular...

  8. Deconvolution and Regularization with Toeplitz Matrices

    DEFF Research Database (Denmark)

    Hansen, Per Christian

    2002-01-01

    treatment requires the use of regularization methods. The corresponding computational problem takes the form of structured matrix problem with a Toeplitz or block Toeplitz coefficient matrix. The aim of this paper is to present a tutorial survey of numerical algorithms for the practical treatment...... of these discretized deconvolution problems, with emphasis on methods that take the special structure of the matrix into account. Wherever possible, analogies to classical DFT-based deconvolution problems are drawn. Among other things, we present direct methods for regularization with Toeplitz matrices, and we show...

  9. On a correspondence between regular and non-regular operator monotone functions

    DEFF Research Database (Denmark)

    Gibilisco, P.; Hansen, Frank; Isola, T.

    2009-01-01

    We prove the existence of a bijection between the regular and the non-regular operator monotone functions satisfying a certain functional equation. As an application we give a new proof of the operator monotonicity of certain functions related to the Wigner-Yanase-Dyson skew information....

  10. Stable sequential Kuhn-Tucker theorem in iterative form or a regularized Uzawa algorithm in a regular nonlinear programming problem

    Science.gov (United States)

    Sumin, M. I.

    2015-06-01

    A parametric nonlinear programming problem in a metric space with an operator equality constraint in a Hilbert space is studied assuming that its lower semicontinuous value function at a chosen individual parameter value has certain subdifferentiability properties in the sense of nonlinear (nonsmooth) analysis. Such subdifferentiability can be understood as the existence of a proximal subgradient or a Fréchet subdifferential. In other words, an individual problem has a corresponding generalized Kuhn-Tucker vector. Under this assumption, a stable sequential Kuhn-Tucker theorem in nondifferential iterative form is proved and discussed in terms of minimizing sequences on the basis of the dual regularization method. This theorem provides necessary and sufficient conditions for the stable construction of a minimizing approximate solution in the sense of Warga in the considered problem, whose initial data can be approximately specified. A substantial difference of the proved theorem from its classical same-named analogue is that the former takes into account the possible instability of the problem in the case of perturbed initial data and, as a consequence, allows for the inherited instability of classical optimality conditions. This theorem can be treated as a regularized generalization of the classical Uzawa algorithm to nonlinear programming problems. Finally, the theorem is applied to the "simplest" nonlinear optimal control problem, namely, to a time-optimal control problem.

  11. Orientating Children in Regular Schools towards Impairments.

    Science.gov (United States)

    Gorman, P. P.

    1979-01-01

    The author discusses audio-visual material and other education techniques which eventually may facilitate the integration of children with mental, physical, and sensory impairments in the regular classroom. Films, radio texts, theater plays, and books are considered. Emphasis is on the introduction of impairments to the nonhandicapped population.…

  12. Regular ultrafilters and finite square principles

    NARCIS (Netherlands)

    Kennedy, J.; Shelah, S.; Väänänen, J.

    2008-01-01

    We show that many singular cardinals lambda above a strongly compact cardinal have regular ultrafilters D that violate the finite square principle square(fin)(lambda,D) introduced in [3]. For such ultrafilters D and cardinals lambda there are models of size lambda for which M-lambda/D is not

  13. Broad temperature range antiferroelectric regular mixtures

    Science.gov (United States)

    Dabrowski, Roman; Czuprynski, Krzysztof; Gasowska, J.; Oton, Jose; Quintana, Xabier; Castillo, P. L.; Bennis, N.

    2004-09-01

    Tristate regular mixtures with different electro-optical properties such as threshold voltage, saturation voltage, holding ratio and response time are presented. The relation of properties with the structure of compounds is discussed. All of mixtures show only moderate dynamic and static contrast but big gray level scale without hysteresis for positive and negative field driving.

  14. Regular and context-free nominal traces

    DEFF Research Database (Denmark)

    Degano, Pierpaolo; Ferrari, Gian-Luigi; Mezzetti, Gianluca

    2017-01-01

    Two kinds of automata are presented, for recognising new classes of regular and context-free nominal languages. We compare their expressive power with analogous proposals in the literature, showing that they express novel classes of languages. Although many properties of classical languages hold ...

  15. On bigraded regularities of Rees algebra

    Indian Academy of Sciences (India)

    Ramakrishna Nanduri

    2017-08-03

    Aug 3, 2017 ... K-algebra were defined in terms of syzygies [18, Definition 5.4] (also see [10, Defini- tion 1.1.3]). Since R(I) ... way (see Definition 2.3). We also define the Tor bigraded regularities of R; see ...... referee for a thorough reading of the manuscript and suggesting some improvements. References. [1] Aramova A ...

  16. From recreational to regular drug use

    DEFF Research Database (Denmark)

    Järvinen, Margaretha; Ravn, Signe

    2011-01-01

    to extricate themselves from this pattern. Hence, when regular drug users talk about their future, it is not a future characterised by total abstinence from illegal drugs but a future where they have rolled back their drug use career to the recreational drug use pattern they started out with. Empirically...

  17. On regular riesz operators | Raubenheimer | Quaestiones ...

    African Journals Online (AJOL)

    The r-asymptotically quasi finite rank operators on Banach lattices are examples of regular Riesz operators. We characterise Riesz elements in a subalgebra of a Banach algebra in terms of Riesz elements in the Banach algebra. This enables us to characterise r-asymptotically quasi finite rank operators in terms of adjoint ...

  18. Regular Sleep Makes for Happier College Students

    Science.gov (United States)

    ... https://medlineplus.gov/news/fullstory_166856.html Regular Sleep Makes for Happier College Students When erratic snoozers improve shut-eye habits, ... Health and Human Services. More Health News on College Health Healthy Sleep Recent Health News Related MedlinePlus Health Topics College ...

  19. 28 CFR 540.44 - Regular visitors.

    Science.gov (United States)

    2010-07-01

    ... 28 Judicial Administration 2 2010-07-01 2010-07-01 false Regular visitors. 540.44 Section 540.44... and if there exists no reason to exclude them. (c) Friends and associates. The visiting privilege ordinarily will be extended to friends and associates having an established relationship with the inmate...

  20. Neural Classifier Construction using Regularization, Pruning

    DEFF Research Database (Denmark)

    Hintz-Madsen, Mads; Hansen, Lars Kai; Larsen, Jan

    1998-01-01

    In this paper we propose a method for construction of feed-forward neural classifiers based on regularization and adaptive architectures. Using a penalized maximum likelihood scheme, we derive a modified form of the entropic error measure and an algebraic estimate of the test error. In conjunction...

  1. Regularization algorithms based on total least squares

    DEFF Research Database (Denmark)

    Hansen, Per Christian; O'Leary, Dianne P.

    1996-01-01

    or truncated {\\em SVD}, are not designed for problems in which both the coefficient matrix and the right-hand side are known only approximately. For this reason, we develop {\\em TLS}\\/-based regularization methods that take this situation into account. Here, we survey two different approaches to incorporation...

  2. Stabilization, pole placement, and regular implementability

    NARCIS (Netherlands)

    Belur, MN; Trentelman, HL

    In this paper, we study control by interconnection of linear differential systems. We give necessary and sufficient conditions for regular implementability of a-given linear, differential system. We formulate the problems of stabilization and pole placement as problems of finding a suitable,

  3. Stabilization, Pole Placement, and Regular Implementability

    NARCIS (Netherlands)

    Belur, Madhu N.; Trentelman, H.L.

    2002-01-01

    In this paper, we study control by interconnection of linear differential systems. We give necessary and sufficient conditions for regular implementability of a given linear differential system. We formulate the problems of stabilization and pole placement as problems of finding a suitable,

  4. A Sim(2 invariant dimensional regularization

    Directory of Open Access Journals (Sweden)

    J. Alfaro

    2017-09-01

    Full Text Available We introduce a Sim(2 invariant dimensional regularization of loop integrals. Then we can compute the one loop quantum corrections to the photon self energy, electron self energy and vertex in the Electrodynamics sector of the Very Special Relativity Standard Model (VSRSM.

  5. Annotation of regular polysemy and underspecification

    DEFF Research Database (Denmark)

    Martínez Alonso, Héctor; Pedersen, Bolette Sandford; Bel, Núria

    2013-01-01

    We present the result of an annotation task on regular polysemy for a series of seman- tic classes or dot types in English, Dan- ish and Spanish. This article describes the annotation process, the results in terms of inter-encoder agreement, and the sense distributions obtained with two methods...

  6. EXPLORING REGULARITIES FOR IMPROVING FAÇADE RECONSTRUCTION FROM POINT CLOUDS

    Directory of Open Access Journals (Sweden)

    K. Zhou

    2016-06-01

    imperfectness of object recognition algorithms. In this paper, we employ regularities, which exist on façades, to mitigate these problems. For example, doors, windows and balconies often have orthogonal and parallel boundaries. Many windows are constructed with the same shape. They may be arranged at the same lines and distance intervals, so do different windows. By identifying regularities among objects with relatively poor quality, these can be applied to calibrate the objects and improve their quality. The paper focuses on the regularities among the windows, which is the majority of objects on the wall. Regularities are classified into three categories: within an individual window, among similar windows and among different windows. Nine cases are specified as a reference for exploration. A hierarchical clustering method is employed to identify and apply regularities in a feature space, where regularities can be identified from clusters. To find the corresponding features in the nine cases of regularities, two phases are distinguished for similar and different windows. In the first phase, ICP (iterative closest points is used to identify groups of similar windows. The registered points and a number of transformation matrices are used to identify and apply regularities among similar windows. In the second phase, features are extracted from the boundaries of the different windows. When applying regularities by relocating windows, the connections, called chains, established among the similar windows in the first phase are preserved. To test the performance of the algorithms, two datasets from terrestrial LiDAR point clouds are used. Both show good effects on the reconstructed model, while still matching with original point cloud, preventing over or under-regularization.

  7. EXPLORING REGULARITIES FOR IMPROVING FAÇADE RECONSTRUCTION FROM POINT CLOUDS

    Directory of Open Access Journals (Sweden)

    K. Zhou

    2016-06-01

    Full Text Available (Semi-automatic facade reconstruction from terrestrial LiDAR point clouds is often affected by both quality of point cloud itself and imperfectness of object recognition algorithms. In this paper, we employ regularities, which exist on façades, to mitigate these problems. For example, doors, windows and balconies often have orthogonal and parallel boundaries. Many windows are constructed with the same shape. They may be arranged at the same lines and distance intervals, so do different windows. By identifying regularities among objects with relatively poor quality, these can be applied to calibrate the objects and improve their quality. The paper focuses on the regularities among the windows, which is the majority of objects on the wall. Regularities are classified into three categories: within an individual window, among similar windows and among different windows. Nine cases are specified as a reference for exploration. A hierarchical clustering method is employed to identify and apply regularities in a feature space, where regularities can be identified from clusters. To find the corresponding features in the nine cases of regularities, two phases are distinguished for similar and different windows. In the first phase, ICP (iterative closest points is used to identify groups of similar windows. The registered points and a number of transformation matrices are used to identify and apply regularities among similar windows. In the second phase, features are extracted from the boundaries of the different windows. When applying regularities by relocating windows, the connections, called chains, established among the similar windows in the first phase are preserved. To test the performance of the algorithms, two datasets from terrestrial LiDAR point clouds are used. Both show good effects on the reconstructed model, while still matching with original point cloud, preventing over or under-regularization.

  8. Quantification of fetal heart rate regularity using symbolic dynamics

    Science.gov (United States)

    van Leeuwen, P.; Cysarz, D.; Lange, S.; Geue, D.; Groenemeyer, D.

    2007-03-01

    Fetal heart rate complexity was examined on the basis of RR interval time series obtained in the second and third trimester of pregnancy. In each fetal RR interval time series, short term beat-to-beat heart rate changes were coded in 8bit binary sequences. Redundancies of the 28 different binary patterns were reduced by two different procedures. The complexity of these sequences was quantified using the approximate entropy (ApEn), resulting in discrete ApEn values which were used for classifying the sequences into 17 pattern sets. Also, the sequences were grouped into 20 pattern classes with respect to identity after rotation or inversion of the binary value. There was a specific, nonuniform distribution of the sequences in the pattern sets and this differed from the distribution found in surrogate data. In the course of gestation, the number of sequences increased in seven pattern sets, decreased in four and remained unchanged in six. Sequences that occurred less often over time, both regular and irregular, were characterized by patterns reflecting frequent beat-to-beat reversals in heart rate. They were also predominant in the surrogate data, suggesting that these patterns are associated with stochastic heart beat trains. Sequences that occurred more frequently over time were relatively rare in the surrogate data. Some of these sequences had a high degree of regularity and corresponded to prolonged heart rate accelerations or decelerations which may be associated with directed fetal activity or movement or baroreflex activity. Application of the pattern classes revealed that those sequences with a high degree of irregularity correspond to heart rate patterns resulting from complex physiological activity such as fetal breathing movements. The results suggest that the development of the autonomic nervous system and the emergence of fetal behavioral states lead to increases in not only irregular but also regular heart rate patterns. Using symbolic dynamics to

  9. Space Telescopes

    Science.gov (United States)

    Rigby, Jane R.

    2011-01-01

    The science of astronomy depends on modern-day temples called telescopes. Astronomers make pilgrimages to remote mountaintops where these large, intricate, precise machines gather light that rains down from the Universe. Bit, since Earth is a bright, turbulent planet, our finest telescopes are those that have been launched into the dark stillness of space. These space telescopes, named after heroes of astronomy (Hubble, Chandra, Spitzer, Herschel), are some of the best ideas our species has ever had. They show us, over 13 billion years of cosmic history, how galaxies and quasars evolve. They study planets orbiting other stars. They've helped us determine that 95% of the Universe is of unknown composition. In short, they tell us about our place in the Universe. The next step in this journey is the James Webb Space Telescope, being built by NASA, Europe, and Canada for a 2018 launch; Webb will reveal the first galaxies that ever formed.

  10. Spatially regularized multifractal analysis for fMRI data.

    Science.gov (United States)

    Ciuciu, Philippe; Wendt, Herwig; Combrexelle, Sebastien; Abry, Patrice

    2017-07-01

    Scale-free dynamics is nowadays a massively used paradigm to model infraslow macroscopic brain activity. Multifractal analysis is becoming the standard tool to characterize scale-free dynamics. It is commonly used on various modalities of neuroimaging data to evaluate whether arrhythmic fluctuations in ongoing or evoked brain activity are related to pathologies (Alzheimer, epilepsy) or task performance. The success of multifractal analysis in neurosciences remains however so far contrasted: While it lead to relevant findings on M/EEG data, less clear impact was shown when applied to fMRI data. This is mostly due to their poor time resolution and very short duration as well as to the fact that analysis remains performed voxelwise. To take advantage of the large amount of voxels recorded jointly in fMRI, the present contribution proposes the use of a recently introduced Bayesian formalism for multifractal analysis, that regularizes the estimation of the multifractality parameter of a given voxel using information from neighbor voxels. The benefits of this regularized multifractal analysis are illustrated by comparison against classical multifractal analysis on fMRI data collected on one subject, at rest and during a working memory task: Though not yet statistically significant, increased multifractality is observed in task-negative and task-positive networks, respectively.

  11. $\\mathfrak P_0$-spaces

    OpenAIRE

    Banakh, Taras

    2013-01-01

    A regular topological space $X$ is defined to be a $\\mathfrak P_0$-space if it has countable Pytkeev network. A network $\\mathcal N$ for $X$ is called a Pytkeev network if for any point $x\\in X$, neighborhood $O_x\\subset X$ of $x$ and subset $A\\subset X$ accumulating at a $x$ there is a set $N\\in\\mathcal N$ such that $N\\subset O_x$ and $N\\cap A$ is infinite. The class of $\\mathfrak P_0$-spaces contains all metrizable separable spaces and is (properly) contained in the Michael's class of $\\ale...

  12. Short-range communication system

    Science.gov (United States)

    Alhorn, Dean C. (Inventor); Howard, David E. (Inventor); Smith, Dennis A. (Inventor)

    2012-01-01

    A short-range communication system includes an antenna, a transmitter, and a receiver. The antenna is an electrical conductor formed as a planar coil with rings thereof being uniformly spaced. The transmitter is spaced apart from the plane of the coil by a gap. An amplitude-modulated and asynchronous signal indicative of a data stream of known peak amplitude is transmitted into the gap. The receiver detects the coil's resonance and decodes same to recover the data stream.

  13. Correlates of visit regularity among family planning clients in urban Yemen.

    Science.gov (United States)

    Inaoka, E; Wakai, S; Nakamura, Y; Al Babily, Y; Saghayroun, A A

    1999-01-01

    Contraceptive discontinuation has been an important issue in low contraceptive prevalence countries like Yemen. Religious and cultural factors might play a large role in barriers against contraceptive acceptance. This study revealed the characteristics of women who accepted contraception and the factors related to the regularity of visits to a clinic in Yemen. Women perceived that accepting contraception was against neither Islam nor their husband's attitudes. They rather paid attention to mother and child health. Regularity of visits was not related to socioeconomic or demographic factors, but was related to satisfaction with family planning services. This implies that different approaches are needed to promote 'continuation' and 'regular visits'. A population policy which promotes birth spacing for maternal health in accordance with cultural contexts should be an effective and acceptable strategy in Yemen. Regular visits could be prompted by increasing the quality of services, including communication between clients and providers about side-effects and alternative choices of methods.

  14. Regular Magnetic Black Hole Gravitational Lensing

    Science.gov (United States)

    Liang, Jun

    2017-05-01

    The Bronnikov regular magnetic black hole as a gravitational lens is studied. In nonlinear electrodynamics, photons do not follow null geodesics of background geometry, but move along null geodesics of a corresponding effective geometry. To study the Bronnikov regular magnetic black hole gravitational lensing in the strong deflection limit, the corresponding effective geometry should be obtained firstly. This is the most important and key step. We obtain the deflection angle in the strong deflection limit, and further calculate the angular positions and magnifications of relativistic images as well as the time delay between different relativistic images. The influence of the magnetic charge on the black hole gravitational lensing is also discussed. Supported by the Natural Science Foundation of Education Department of Shannxi Province under Grant No 15JK1077, and the Doctorial Scientific Research Starting Fund of Shannxi University of Science and Technology under Grant No BJ12-02.

  15. Exploring the structural regularities in networks

    CERN Document Server

    Shen, Hua-Wei; Guo, Jia-Feng

    2011-01-01

    In this paper, we consider the problem of exploring structural regularities of networks by dividing the nodes of a network into groups such that the members of each group have similar patterns of connections to other groups. Specifically, we propose a general statistical model to describe network structure. In this model, group is viewed as hidden or unobserved quantity and it is learned by fitting the observed network data using the expectation-maximization algorithm. Compared with existing models, the most prominent strength of our model is the high flexibility. This strength enables it to possess the advantages of existing models and overcomes their shortcomings in a unified way. As a result, not only broad types of structure can be detected without prior knowledge of what type of intrinsic regularities exist in the network, but also the type of identified structure can be directly learned from data. Moreover, by differentiating outgoing edges from incoming edges, our model can detect several types of stru...

  16. Regularized algorithm for Raman lidar data processing.

    Science.gov (United States)

    Shcherbakov, Valery

    2007-08-01

    A regularized algorithm that has the potential to improve the quality of Raman lidar data processing is presented. Compared to the conventional scheme, the proposed algorithm has the advantage, which results from the fact that it is based on a well-posed procedure. That is, the profile of the aerosol backscatter coefficient is computed directly, using the explicit relationships, without numerical differentiation. Thereafter, the profile of the lidar ratio is retrieved as a regularized solution of a first-kind Volterra integral equation. Once these two steps have been completed, the profile of the aerosol extinction coefficient is computed by a straightforward multiplication. The numerical simulations demonstrated that the proposed algorithm provides good accuracy and resolution of aerosol profile retrievals. The error analysis showed that the retrieved profiles are continuous functions of the measurement errors and of the a priori information uncertainties.

  17. Modeling Regular Replacement for String Constraint Solving

    Science.gov (United States)

    Fu, Xiang; Li, Chung-Chih

    2010-01-01

    Bugs in user input sanitation of software systems often lead to vulnerabilities. Among them many are caused by improper use of regular replacement. This paper presents a precise modeling of various semantics of regular substitution, such as the declarative, finite, greedy, and reluctant, using finite state transducers (FST). By projecting an FST to its input/output tapes, we are able to solve atomic string constraints, which can be applied to both the forward and backward image computation in model checking and symbolic execution of text processing programs. We report several interesting discoveries, e.g., certain fragments of the general problem can be handled using less expressive deterministic FST. A compact representation of FST is implemented in SUSHI, a string constraint solver. It is applied to detecting vulnerabilities in web applications

  18. Basic analysis of regularized series and products

    CERN Document Server

    Jorgenson, Jay A

    1993-01-01

    Analytic number theory and part of the spectral theory of operators (differential, pseudo-differential, elliptic, etc.) are being merged under amore general analytic theory of regularized products of certain sequences satisfying a few basic axioms. The most basic examples consist of the sequence of natural numbers, the sequence of zeros with positive imaginary part of the Riemann zeta function, and the sequence of eigenvalues, say of a positive Laplacian on a compact or certain cases of non-compact manifolds. The resulting theory is applicable to ergodic theory and dynamical systems; to the zeta and L-functions of number theory or representation theory and modular forms; to Selberg-like zeta functions; andto the theory of regularized determinants familiar in physics and other parts of mathematics. Aside from presenting a systematic account of widely scattered results, the theory also provides new results. One part of the theory deals with complex analytic properties, and another part deals with Fourier analys...

  19. Testing the Equivalence of Regular Languages

    Directory of Open Access Journals (Sweden)

    Marco Almeida

    2009-07-01

    Full Text Available The minimal deterministic finite automaton is generally used to determine regular languages equality. Antimirov and Mosses proposed a rewrite system for deciding regular expressions equivalence of which Almeida et al. presented an improved variant. Hopcroft and Karp proposed an almost linear algorithm for testing the equivalence of two deterministic finite automata that avoids minimisation. In this paper we improve the best-case running time, present an extension of this algorithm to non-deterministic finite automata, and establish a relationship between this algorithm and the one proposed in Almeida et al. We also present some experimental comparative results. All these algorithms are closely related with the recent coalgebraic approach to automata proposed by Rutten.

  20. Regularization in Orbital Mechanics; Theory and Practice

    Science.gov (United States)

    Roa, Javier

    2017-09-01

    Regularized equations of motion can improve numerical integration for the propagation of orbits, and simplify the treatment of mission design problems. This monograph discusses standard techniques and recent research in the area. While each scheme is derived analytically, its accuracy is investigated numerically. Algebraic and topological aspects of the formulations are studied, as well as their application to practical scenarios such as spacecraft relative motion and new low-thrust trajectories.

  1. Implementing regularization implicitly via approximate eigenvector computation

    OpenAIRE

    Mahoney, Michael W.; Orecchia, Lorenzo

    2010-01-01

    Regularization is a powerful technique for extracting useful information from noisy data. Typically, it is implemented by adding some sort of norm constraint to an objective function and then exactly optimizing the modified objective function. This procedure often leads to optimization problems that are computationally more expensive than the original problem, a fact that is clearly problematic if one is interested in large-scale applications. On the other hand, a large body of empirical work...

  2. Bifurcations in the regularized Ericksen bar model

    OpenAIRE

    Grinfeld, M.; Lord, G. J. (Gabriel J.)

    2007-01-01

    We consider the regularized Ericksen model of an elastic bar on an elastic foundation on an interval with Dirichlet boundary conditions as a two-parameter bifurcation problem. We explore, using local bifurcation analysis and continuation methods, the structure of bifurcations from double zero eigenvalues. Our results provide evidence in support of M\\"uller's conjecture \\cite{Muller} concerning the symmetry of local minimizers of the associated energy functional and describe in detail the stru...

  3. On bigraded regularities of Rees algebra

    Indian Academy of Sciences (India)

    For any homogeneous ideal I in K [ x 1 , . . . , x n ] of analytic spread ℓ , we show that for the Rees algebra R ( I ) , r e g ( 0 , 1 ) s y z \\sl ( R ( I ) ) = r e g ( 0 , 1 ) T \\sl ( R ( I ) ) . We compute a formula for the (0, 1)-regularity of R ( I ) , which is a bigraded analog of Theorem1.1 of Aramova and Herzog ( A m . J . M a t h . 122 ( 4 ) ...

  4. Preconditioners for regularized saddle point matrices

    Czech Academy of Sciences Publication Activity Database

    Axelsson, Owe

    2011-01-01

    Roč. 19, č. 2 (2011), s. 91-112 ISSN 1570-2820 Institutional research plan: CEZ:AV0Z30860518 Keywords : saddle point matrices * preconditioning * regularization * eigenvalue clustering Subject RIV: BA - General Mathematics Impact factor: 0.533, year: 2011 http://www.degruyter.com/view/j/jnma.2011.19.issue-2/jnum.2011.005/jnum.2011.005. xml

  5. Regularity bounds on Zakharov system evolutions

    Directory of Open Access Journals (Sweden)

    James Colliander

    2002-08-01

    Full Text Available Spatial regularity properties of certain global-in-time solutions of the Zakharov system are established. In particular, the evolving solution $u(t$ is shown to satisfy an estimate $|u(t|_{H^s} leq C |t|^{(s-1+}$, where $H^s$ is the standard spatial Sobolev norm. The proof is an adaptation of earlier work on the nonlinear Schrodinger equation which reduces matters to bilinear estimates.

  6. Least Square Regularized Regression for Multitask Learning

    Directory of Open Access Journals (Sweden)

    Yong-Li Xu

    2013-01-01

    hypothesis space being the union of a sequence of Hilbert spaces. The algorithm consists of two steps of selecting the optimal Hilbert space and searching for the optimal function. We assume that the distributions of different tasks are related to a set of transformations under which any Hilbert space in the hypothesis space is norm invariant. We prove that under the above assumption the optimal prediction function of every task is in the same Hilbert space. Based on this result, a pivotal error decomposition is founded, which can use samples of related tasks to bound excess error of the target task. We obtain an upper bound for the sample error of related tasks, and based on this bound, potential faster learning rates are obtained compared to single-task learning algorithms.

  7. A multiresolution method for solving the Poisson equation using high order regularization

    DEFF Research Database (Denmark)

    Hejlesen, Mads Mølholm; Walther, Jens Honore

    2016-01-01

    We present a novel high order multiresolution Poisson solver based on regularized Green's function solutions to obtain exact free-space boundary conditions while using fast Fourier transforms for computational efficiency. Multiresolution is a achieved through local refinement patches and regulari......We present a novel high order multiresolution Poisson solver based on regularized Green's function solutions to obtain exact free-space boundary conditions while using fast Fourier transforms for computational efficiency. Multiresolution is a achieved through local refinement patches...... and regularized Green's functions corresponding to the difference in the spatial resolution between the patches. The full solution is obtained utilizing the linearity of the Poisson equation enabling super-position of solutions. We show that the multiresolution Poisson solver produces convergence rates...

  8. Ensembles of Bayesian-regularized genetic neural networks for modeling of acetylcholinesterase inhibition by huprines.

    Science.gov (United States)

    Fernández, Michael; Caballero, Julio

    2006-10-01

    Acetylcholinesterase inhibition was modeled for a set of huprines using ensembles of Bayesian-regularized Genetic Neural Networks. In the Bayesian-regularized Genetic Neural Network approach the Bayesian regularization avoids overfitted regressions and the genetic algorithm allows exploring a wide pool of three-dimensional descriptors. The predictive capacity of our selected model was evaluated by averaging multiple validation sets generated as members of neural network ensembles. When 60 members are assembled, the neural network ensemble provides a reliable measure of training and test set R(2)-values of 0.945 and 0.850 respectively. In other respects, the ability of the nonlinear selected genetic algorithm space for differentiate the data were evidenced when total data set was well distributed in a Kohonen self-organizing map. The analysis of the self-organizing map zones allows establishing the main structural features differentiated by our vectorial space.

  9. Automatic detection of regularly repeating vocalizations

    Science.gov (United States)

    Mellinger, David

    2005-09-01

    Many animal species produce repetitive sounds at regular intervals. This regularity can be used for automatic recognition of the sounds, providing improved detection at a given signal-to-noise ratio. Here, the detection of sperm whale sounds is examined. Sperm whales produce highly repetitive ``regular clicks'' at periods of about 0.2-2 s, and faster click trains in certain behavioral contexts. The following detection procedure was tested: a spectrogram was computed; values within a certain frequency band were summed; time windowing was applied; each windowed segment was autocorrelated; and the maximum of the autocorrelation within a certain periodicity range was chosen. This procedure was tested on sets of recordings containing sperm whale sounds and interfering sounds, both low-frequency recordings from autonomous hydrophones and high-frequency ones from towed hydrophone arrays. An optimization procedure iteratively varies detection parameters (spectrogram frame length and frequency range, window length, periodicity range, etc.). Performance of various sets of parameters was measured by setting a standard level of allowable missed calls, and the resulting optimium parameters are described. Performance is also compared to that of a neural network trained using the data sets. The method is also demonstrated for sounds of blue whales, minke whales, and seismic airguns. [Funding from ONR.

  10. Hyperspectral Image Recovery via Hybrid Regularization.

    Science.gov (United States)

    Arablouei, Reza; de Hoog, Frank

    2016-09-27

    Natural images tend to mostly consist of smooth regions with individual pixels having highly correlated spectra. This information can be exploited to recover hyperspectral images of natural scenes from their incomplete and noisy measurements. To perform the recovery while taking full advantage of the prior knowledge, we formulate a composite cost function containing a square-error data-fitting term and two distinct regularization terms pertaining to spatial and spectral domains. The regularization for the spatial domain is the sum of total-variation of the image frames corresponding to all spectral bands. The regularization for the spectral domain is the ��������-norm of the coefficient matrix obtained by applying a suitable sparsifying transform to the spectra of the pixels. We use an accelerated proximal-subgradient method to minimize the formulated cost function. We analyse the performance of the proposed algorithm and prove its convergence. Numerical simulations using real hyperspectral images exhibit that the proposed algorithm offers an excellent recovery performance with a number of measurements that is only a small fraction of the hyperspectral image data size. Simulation results also show that the proposed algorithm significantly outperforms an accelerated proximal-gradient algorithm that solves the classical basis-pursuit denoising problem to recover the hyperspectral image.

  11. Improved Approximate String Matching and Regular Expression Matching on Ziv-Lempel Compressed Texts

    DEFF Research Database (Denmark)

    Bille, Philip; Fagerberg, Rolf; Gørtz, Inge Li

    2009-01-01

    We study the approximate string matching and regular expression matching problem for the case when the text to be searched is compressed with the Ziv-Lempel adaptive dictionary compression schemes. We present a time-space trade-off that leads to algorithms improving the previously known...... complexities for both problems. In particular, we significantly improve the space bounds, which in practical applications are likely to be a bottleneck....

  12. Bypassing the Limits of Ll Regularization: Convex Sparse Signal Processing Using Non-Convex Regularization

    Science.gov (United States)

    Parekh, Ankit

    Sparsity has become the basis of some important signal processing methods over the last ten years. Many signal processing problems (e.g., denoising, deconvolution, non-linear component analysis) can be expressed as inverse problems. Sparsity is invoked through the formulation of an inverse problem with suitably designed regularization terms. The regularization terms alone encode sparsity into the problem formulation. Often, the ℓ1 norm is used to induce sparsity, so much so that ℓ1 regularization is considered to be `modern least-squares'. The use of ℓ1 norm, as a sparsity-inducing regularizer, leads to a convex optimization problem, which has several benefits: the absence of extraneous local minima, well developed theory of globally convergent algorithms, even for large-scale problems. Convex regularization via the ℓ1 norm, however, tends to under-estimate the non-zero values of sparse signals. In order to estimate the non-zero values more accurately, non-convex regularization is often favored over convex regularization. However, non-convex regularization generally leads to non-convex optimization, which suffers from numerous issues: convergence may be guaranteed to only a stationary point, problem specific parameters may be difficult to set, and the solution is sensitive to the initialization of the algorithm. The first part of this thesis is aimed toward combining the benefits of non-convex regularization and convex optimization to estimate sparse signals more effectively. To this end, we propose to use parameterized non-convex regularizers with designated non-convexity and provide a range for the non-convex parameter so as to ensure that the objective function is strictly convex. By ensuring convexity of the objective function (sum of data-fidelity and non-convex regularizer), we can make use of a wide variety of convex optimization algorithms to obtain the unique global minimum reliably. The second part of this thesis proposes a non-linear signal

  13. Neural Evidence of Statistical Learning: Efficient Detection of Visual Regularities without Awareness

    Science.gov (United States)

    Turk-Browne, Nicholas B.; Scholl, Brian J.; Chun, Marvin M.; Johnson, Marcia K.

    2009-01-01

    Our environment contains regularities distributed in space and time that can be detected by way of statistical learning. This unsupervised learning occurs without intent or awareness, but little is known about how it relates to other types of learning, how it affects perceptual processing, and how quickly it can occur. Here we use fMRI during…

  14. Remark on regularity criteria of a weak solution to the 3D MHD equations

    Directory of Open Access Journals (Sweden)

    Jae-Myoung Kim

    2017-04-01

    Full Text Available We study the regularity conditions for a weak solution to 3D MHD equations in a whole space $\\mathbb{R}^3$, based on the papers [C. He, Y. Wang, J. Differential Equations, 238(2007, No. 1, 1–17] and [W. Wang, J. Math. Anal. Appl., 328(2007, No. 2, 1082–1086].

  15. Regular multihorizon black holes in modified gravity with nonlinear electrodynamics

    Science.gov (United States)

    Nojiri, Shin'ichi; Odintsov, S. D.

    2017-11-01

    We investigated the regular multihorizon black holes in the Einstein gravity, F (R ) gravity, and the 5 dimensional Gauss-Bonnet gravity, all of them coupled with nonlinear electrodynamics. We presented several explicit examples of the actions which admit the solutions describing regular black hole space-time with multihorizons. Thermodynamics of the obtained black hole solutions is studied. The explicit expressions of the temperature, the entropy, the thermodynamical energy and the free energy are obtained. Although the temperature vanishes in the extremal limit where the radii of the two horizons coincide with each other as in the standard multihorizon black hole like the Reissner-Nordström black hole or the Kerr black hole, the larger temperature corresponds to the larger horizon radius. This is different from the standard black holes, where the larger temperature corresponds to the smaller horizon radius. We also found that the specific heat becomes positive for the large temperature, which is also different from the standard black holes, where the specific heat is negative. It should be also noted that the thermodynamical energy is not identical with the ADM mass. Furthermore in case of the Gauss-Bonnet gravity,it is demonstrated that the entropy can become negative.

  16. Regularization of parallel MRI reconstruction using in vivo coil sensitivities

    Science.gov (United States)

    Duan, Qi; Otazo, Ricardo; Xu, Jian; Sodickson, Daniel K.

    2009-02-01

    Parallel MRI can achieve increased spatiotemporal resolution in MRI by simultaneously sampling reduced k-space data with multiple receiver coils. One requirement that different parallel MRI techniques have in common is the need to determine spatial sensitivity information for the coil array. This is often done by smoothing the raw sensitivities obtained from low-resolution calibration images, for example via polynomial fitting. However, this sensitivity post-processing can be both time-consuming and error-prone. Another important factor in Parallel MRI is noise amplification in the reconstruction, which is due to non-unity transformations in the image reconstruction associated with spatially correlated coil sensitivity profiles. Generally, regularization approaches, such as Tikhonov and SVD-based methods, are applied to reduce SNR loss, at the price of introducing residual aliasing. In this work, we present a regularization approach using in vivo coil sensitivities in parallel MRI to overcome these potential errors into the reconstruction. The mathematical background of the proposed method is explained, and the technique is demonstrated with phantom images. The effectiveness of the proposed method is then illustrated clinically in a whole-heart 3D cardiac MR acquisition within a single breath-hold. The proposed method can not only overcome the sensitivity calibration problem, but also suppress a substantial portion of reconstruction-related noise without noticeable introduction of residual aliasing artifacts.

  17. Relativity a very short introduction

    CERN Document Server

    Stannard, F Russell

    2008-01-01

    Relativity: A Very Short Introduction makes the theory of relativity understandable and accessible. 100 years ago, Einstein's theory of relativity shattered the world of physics. Our comforting Newtonian ideas of space and time were replaced by bizarre and counterintuitive conclusions: if you move at high speed, time slows down, space squashes up and you get heavier; travel fast enough and you could weigh as much as a jumbo jet, be squashed thinner than a CD without feeling a thing - and live forever. And that was just the special theory. With the general theory came even stranger ideas of curved space-time, which changed our understanding of gravity and the cosmos.

  18. Optimal analysis of structures by concepts of symmetry and regularity

    CERN Document Server

    Kaveh, Ali

    2013-01-01

    Optimal analysis is defined as an analysis that creates and uses sparse, well-structured and well-conditioned matrices. The focus is on efficient methods for eigensolution of matrices involved in static, dynamic and stability analyses of symmetric and regular structures, or those general structures containing such components. Powerful tools are also developed for configuration processing, which is an important issue in the analysis and design of space structures and finite element models. Different mathematical concepts are combined to make the optimal analysis of structures feasible. Canonical forms from matrix algebra, product graphs from graph theory and symmetry groups from group theory are some of the concepts involved in the variety of efficient methods and algorithms presented. The algorithms elucidated in this book enable analysts to handle large-scale structural systems by lowering their computational cost, thus fulfilling the requirement for faster analysis and design of future complex systems. The ...

  19. Regularizing Inverse Preconditioners for Symmetric Band Toeplitz Matrices

    Directory of Open Access Journals (Sweden)

    Lotti G

    2007-01-01

    Full Text Available Image restoration is a widely studied discrete ill-posed problem. Among the many regularization methods used for treating the problem, iterative methods have been shown to be effective. In this paper, we consider the case of a blurring function defined by space invariant and band-limited PSF, modeled by a linear system that has a band block Toeplitz structure with band Toeplitz blocks. In order to reduce the number of iterations required to obtain acceptable reconstructions, in 13 an inverse Toeplitz preconditioner for problems with a Toeplitz structure was proposed. The cost per iteration is of operations, where is the pixel number of the 2D image. In this paper, we propose inverse preconditioners with a band Toeplitz structure, which lower the cost to and in experiments showed the same speed of convergence and reconstruction efficiency as the inverse Toeplitz preconditioner.

  20. Adiabatic regularization for spin-1/2 fields

    Science.gov (United States)

    Landete, Aitor; Navarro-Salas, José; Torrentí, Francisco

    2013-09-01

    We extend the adiabatic regularization method to spin-1/2 fields. The ansatz for the adiabatic expansion for fermionic modes differs significantly from the WKB-type template that works for scalar modes. We give explicit expressions for the first adiabatic orders and analyze particle creation in de Sitter spacetime. As for scalar fields, the adiabatic method can be distinguished by its capability to overcome the UV divergences of the particle number operator. We also test the consistency of the extended method by working out the conformal and axial anomalies for a Dirac field in a Friedmann-Lemaître-Robertson-Walker spacetime, in exact agreement with those obtained from other renormalization prescriptions. We finally show its power by computing the renormalized stress-energy tensor for Dirac fermions in de Sitter space.

  1. Regular-, irregular-, and pseudo-character processing in Chinese: The regularity effect in normal adult readers

    Directory of Open Access Journals (Sweden)

    Dustin Kai Yan Lau

    2014-03-01

    Full Text Available Background Unlike alphabetic languages, Chinese uses a logographic script. However, the pronunciation of many character’s phonetic radical has the same pronunciation as the character as a whole. These are considered regular characters and can be read through a lexical non-semantic route (Weekes & Chen, 1999. Pseudocharacters are another way to study this non-semantic route. A pseudocharacter is the combination of existing semantic and phonetic radicals in their legal positions resulting in a non-existing character (Ho, Chan, Chung, Lee, & Tsang, 2007. Pseudocharacters can be pronounced by direct derivation from the sound of its phonetic radical. Conversely, if the pronunciation of a character does not follow that of the phonetic radical, it is considered as irregular and can only be correctly read through the lexical-semantic route. The aim of the current investigation was to examine reading aloud in normal adults. We hypothesized that the regularity effect, previously described for alphabetical scripts and acquired dyslexic patients of Chinese (Weekes & Chen, 1999; Wu, Liu, Sun, Chromik, & Zhang, 2014, would also be present in normal adult Chinese readers. Method Participants. Thirty (50% female native Hong Kong Cantonese speakers with a mean age of 19.6 years and a mean education of 12.9 years. Stimuli. Sixty regular-, 60 irregular-, and 60 pseudo-characters (with at least 75% of name agreement in Chinese were matched by initial phoneme, number of strokes and family size. Additionally, regular- and irregular-characters were matched by frequency (low and consistency. Procedure. Each participant was asked to read aloud the stimuli presented on a laptop using the DMDX software. The order of stimuli presentation was randomized. Data analysis. ANOVAs were carried out by participants and items with RTs and errors as dependent variables and type of stimuli (regular-, irregular- and pseudo-character as repeated measures (F1 or between subject

  2. Convergence and Fluctuations of Regularized Tyler Estimators

    Science.gov (United States)

    Kammoun, Abla; Couillet, Romain; Pascal, Ferderic; Alouini, Mohamed-Slim

    2016-02-01

    This article studies the behavior of regularized Tyler estimators (RTEs) of scatter matrices. The key advantages of these estimators are twofold. First, they guarantee by construction a good conditioning of the estimate and second, being a derivative of robust Tyler estimators, they inherit their robustness properties, notably their resilience to the presence of outliers. Nevertheless, one major problem that poses the use of RTEs in practice is represented by the question of setting the regularization parameter $\\rho$. While a high value of $\\rho$ is likely to push all the eigenvalues away from zero, it comes at the cost of a larger bias with respect to the population covariance matrix. A deep understanding of the statistics of RTEs is essential to come up with appropriate choices for the regularization parameter. This is not an easy task and might be out of reach, unless one considers asymptotic regimes wherein the number of observations $n$ and/or their size $N$ increase together. First asymptotic results have recently been obtained under the assumption that $N$ and $n$ are large and commensurable. Interestingly, no results concerning the regime of $n$ going to infinity with $N$ fixed exist, even though the investigation of this assumption has usually predated the analysis of the most difficult $N$ and $n$ large case. This motivates our work. In particular, we prove in the present paper that the RTEs converge to a deterministic matrix when $n\\to\\infty$ with $N$ fixed, which is expressed as a function of the theoretical covariance matrix. We also derive the fluctuations of the RTEs around this deterministic matrix and establish that these fluctuations converge in distribution to a multivariate Gaussian distribution with zero mean and a covariance depending on the population covariance and the parameter $\\rho$.

  3. Convergence and fluctuations of Regularized Tyler estimators

    KAUST Repository

    Kammoun, Abla

    2015-10-26

    This article studies the behavior of regularized Tyler estimators (RTEs) of scatter matrices. The key advantages of these estimators are twofold. First, they guarantee by construction a good conditioning of the estimate and second, being a derivative of robust Tyler estimators, they inherit their robustness properties, notably their resilience to the presence of outliers. Nevertheless, one major problem that poses the use of RTEs in practice is represented by the question of setting the regularization parameter p. While a high value of p is likely to push all the eigenvalues away from zero, it comes at the cost of a larger bias with respect to the population covariance matrix. A deep understanding of the statistics of RTEs is essential to come up with appropriate choices for the regularization parameter. This is not an easy task and might be out of reach, unless one considers asymptotic regimes wherein the number of observations n and/or their size N increase together. First asymptotic results have recently been obtained under the assumption that N and n are large and commensurable. Interestingly, no results concerning the regime of n going to infinity with N fixed exist, even though the investigation of this assumption has usually predated the analysis of the most difficult N and n large case. This motivates our work. In particular, we prove in the present paper that the RTEs converge to a deterministic matrix when n → ∞ with N fixed, which is expressed as a function of the theoretical covariance matrix. We also derive the fluctuations of the RTEs around this deterministic matrix and establish that these fluctuations converge in distribution to a multivariate Gaussian distribution with zero mean and a covariance depending on the population covariance and the parameter.

  4. Two-pass greedy regular expression parsing

    DEFF Research Database (Denmark)

    Grathwohl, Niels Bjørn Bugge; Henglein, Fritz; Nielsen, Lasse

    2013-01-01

    We present new algorithms for producing greedy parses for regular expressions (REs) in a semi-streaming fashion. Our lean-log algorithm executes in time O(mn) for REs of size m and input strings of size n and outputs a compact bit-coded parse tree representation. It improves on previous algorithms...... by: operating in only 2 passes; using only O(m) words of random-access memory (independent of n); requiring only kn bits of sequentially written and read log storage, where k

  5. Multichannel image regularization using anisotropic geodesic filtering

    Energy Technology Data Exchange (ETDEWEB)

    Grazzini, Jacopo A [Los Alamos National Laboratory

    2010-01-01

    This paper extends a recent image-dependent regularization approach introduced in aiming at edge-preserving smoothing. For that purpose, geodesic distances equipped with a Riemannian metric need to be estimated in local neighbourhoods. By deriving an appropriate metric from the gradient structure tensor, the associated geodesic paths are constrained to follow salient features in images. Following, we design a generalized anisotropic geodesic filter; incorporating not only a measure of the edge strength, like in the original method, but also further directional information about the image structures. The proposed filter is particularly efficient at smoothing heterogeneous areas while preserving relevant structures in multichannel images.

  6. Regular and Chaotic Dynamics of Flexible Plates

    Directory of Open Access Journals (Sweden)

    J. Awrejcewicz

    2014-01-01

    Full Text Available Nonlinear dynamics of flexible rectangular plates subjected to the action of longitudinal and time periodic load distributed on the plate perimeter is investigated. Applying both the classical Fourier and wavelet analysis we illustrate three different Feigenbaum type scenarios of transition from a regular to chaotic dynamics. We show that the system vibrations change with respect not only to the change of control parameters, but also to all fixed parameters (system dynamics changes when the independent variable, time, increases. In addition, we show that chaotic dynamics may appear also after the second Hopf bifurcation. Curves of equal deflections (isoclines lose their previous symmetry while transiting into chaotic vibrations.

  7. Spherical Averages on Regular and Semiregular Graphs

    OpenAIRE

    Douma, Femke

    2008-01-01

    In 1966, P. Guenther proved the following result: Given a continuous function f on a compact surface M of constant curvature -1 and its periodic lift g to the universal covering, the hyperbolic plane, then the averages of the lift g over increasing spheres converge to the average of the function f over the surface M. In this article, we prove similar results for functions on the vertices and edges of regular and semiregular graphs, with special emphasis on the convergence rate. We also consid...

  8. Equivariant semidefinite lifts of regular polygons

    OpenAIRE

    Fawzi, Hamza; Saunderson, James; Parrilo, Pablo A.

    2014-01-01

    Given a polytope P in $\\mathbb{R}^n$, we say that P has a positive semidefinite lift (psd lift) of size d if one can express P as the linear projection of an affine slice of the positive semidefinite cone $\\mathbf{S}^d_+$. If a polytope P has symmetry, we can consider equivariant psd lifts, i.e. those psd lifts that respect the symmetry of P. One of the simplest families of polytopes with interesting symmetries are regular polygons in the plane, which have played an important role in the stud...

  9. Equivariant semidefinite lifts of regular polygons

    OpenAIRE

    Fawzi, Hamza; Saunderson, J.; Parrilo, PA

    2017-01-01

    Given a polytope P in $\\mathbb{R}^n$, we say that P has a positive semidefinite lift (psd lift) of size d if one can express P as the linear projection of an affine slice of the positive semidefinite cone $\\mathbf{S}^d_+$. If a polytope P has symmetry, we can consider equivariant psd lifts, i.e. those psd lifts that respect the symmetry of P. One of the simplest families of polytopes with interesting symmetries are regular polygons in the plane, which have played an importan...

  10. Foaming behaviour of organic and regular milk

    OpenAIRE

    Pijnenburg, J.; Sala, G.; Valenberg, van, H.J.F.; Meinders, M.B.J.

    2012-01-01

    Organic milk is used more and more by consumers to froth milk that is used e.g. for the preparation of a capuccino. Frequently, organic milk turns out not to foam properly. This report describes a study to find the main couse of this bad foamability of organic milk. The focus of the research was to get insight in the foaming behaviour of a specific brand, indicated as A. The foamability and stability of different milk, both organic and regular, as well as skimmed, semi-skimmed, and full fat, ...

  11. Wave regularity in curve integrable spacetimes

    CERN Document Server

    Sanchez, Yafet Sanchez

    2015-01-01

    The idea of defining a gravitational singularity as an obstruction to the dynamical evolution of a test field (described by a PDE) rather than the dynamical evolution of a particle (described by a geodesics) is explored. In particular, the concept of wave regularity is introduced which serves to show that the classical singularities in curve integrable spacetimes do not interrupt the well-posedness of the wave equation. The techniques used also provide arguments that can be extended to establish when a classically singular spacetime remains singular in a semi-classical picture.

  12. Electronic Structure of Regular Bacterial Surface Layers

    Science.gov (United States)

    Vyalikh, Denis V.; Danzenbächer, Steffen; Mertig, Michael; Kirchner, Alexander; Pompe, Wolfgang; Dedkov, Yuriy S.; Molodtsov, Serguei L.

    2004-12-01

    We report photoemission and near-edge x-ray absorption fine structure measurements of the occupied and unoccupied valence electronic states of the regular surface layer of Bacillus sphaericus, which is widely used as the protein template for the fabrication of metallic nanostructures. The two-dimensional protein crystal shows a semiconductorlike behavior with a gap value of ˜3.0 eV and the Fermi energy close to the bottom of the lowest unoccupied molecular orbital. We anticipate that these results will open up new possibilities for the electric addressability of biotemplated low-dimensional hybrid structures.

  13. Strategies for regular segmented reductions on GPU

    DEFF Research Database (Denmark)

    Larsen, Rasmus Wriedt; Henriksen, Troels

    2017-01-01

    We present and evaluate an implementation technique for regular segmented reductions on GPUs. Existing techniques tend to be either consistent in performance but relatively inefficient in absolute terms, or optimised for specific workloads and thereby exhibiting bad performance for certain input...... is in the context of the Futhark compiler, the implementation technique is applicable to any library or language that has a need for segmented reductions. We evaluate the technique on four microbenchmarks, two of which we also compare to implementations in the CUB library for GPU programming, as well as on two...

  14. Feature selection and multi-kernel learning for adaptive graph regularized nonnegative matrix factorization

    KAUST Repository

    Wang, Jim Jing-Yan

    2014-09-20

    Nonnegative matrix factorization (NMF), a popular part-based representation technique, does not capture the intrinsic local geometric structure of the data space. Graph regularized NMF (GNMF) was recently proposed to avoid this limitation by regularizing NMF with a nearest neighbor graph constructed from the input data set. However, GNMF has two main bottlenecks. First, using the original feature space directly to construct the graph is not necessarily optimal because of the noisy and irrelevant features and nonlinear distributions of data samples. Second, one possible way to handle the nonlinear distribution of data samples is by kernel embedding. However, it is often difficult to choose the most suitable kernel. To solve these bottlenecks, we propose two novel graph-regularized NMF methods, AGNMFFS and AGNMFMK, by introducing feature selection and multiple-kernel learning to the graph regularized NMF, respectively. Instead of using a fixed graph as in GNMF, the two proposed methods learn the nearest neighbor graph that is adaptive to the selected features and learned multiple kernels, respectively. For each method, we propose a unified objective function to conduct feature selection/multi-kernel learning, NMF and adaptive graph regularization simultaneously. We further develop two iterative algorithms to solve the two optimization problems. Experimental results on two challenging pattern classification tasks demonstrate that the proposed methods significantly outperform state-of-the-art data representation methods.

  15. Space Physiology and Operational Space Medicine

    Science.gov (United States)

    Scheuring, Richard A.

    2009-01-01

    The objectives of this slide presentation are to teach a level of familiarity with: the effects of short and long duration space flight on the human body, the major medical concerns regarding future long duration missions, the environmental issues that have potential medical impact on the crew, the role and capabilities of the Space Medicine Flight Surgeon and the environmental impacts experienced by the Apollo crews. The main physiological effects of space flight on the human body reviewed in this presentation are: space motion sickness (SMS), neurovestibular, cardiovascular, musculoskeletal, immune/hematopoietic system and behavioral/psycho-social. Some countermeasures are discussed to these effects.

  16. Effect of proximal versus distal 50% enterectomy on nutritional parameters in rats preconditioned with a high-fat diet or regular chow

    OpenAIRE

    Ujwal R. Yanala; Roger D. Reidelberger; Jon S. Thompson; Valerie K. Shostrom; Mark A. Carlson

    2015-01-01

    Obesity may protect against the nutritional consequences of short bowel syndrome. We hypothesized that rats preconditioned with an obesogenic diet would have better outcomes after surgical induction of short bowel syndrome compared to rats on regular chow. Rats were fed a high-fat diet or regular rat chow for six months, and then underwent 50% proximal, 50% distal, or sham enterectomy. Food intake, weight, and body composition were monitored before and for 4 weeks after surgery. The high-fat ...

  17. Supporting Regularized Logistic Regression Privately and Efficiently.

    Science.gov (United States)

    Li, Wenfa; Liu, Hongzhe; Yang, Peng; Xie, Wei

    2016-01-01

    As one of the most popular statistical and machine learning models, logistic regression with regularization has found wide adoption in biomedicine, social sciences, information technology, and so on. These domains often involve data of human subjects that are contingent upon strict privacy regulations. Concerns over data privacy make it increasingly difficult to coordinate and conduct large-scale collaborative studies, which typically rely on cross-institution data sharing and joint analysis. Our work here focuses on safeguarding regularized logistic regression, a widely-used statistical model while at the same time has not been investigated from a data security and privacy perspective. We consider a common use scenario of multi-institution collaborative studies, such as in the form of research consortia or networks as widely seen in genetics, epidemiology, social sciences, etc. To make our privacy-enhancing solution practical, we demonstrate a non-conventional and computationally efficient method leveraging distributing computing and strong cryptography to provide comprehensive protection over individual-level and summary data. Extensive empirical evaluations on several studies validate the privacy guarantee, efficiency and scalability of our proposal. We also discuss the practical implications of our solution for large-scale studies and applications from various disciplines, including genetic and biomedical studies, smart grid, network analysis, etc.

  18. Multiple graph regularized nonnegative matrix factorization

    KAUST Repository

    Wang, Jim Jing-Yan

    2013-10-01

    Non-negative matrix factorization (NMF) has been widely used as a data representation method based on components. To overcome the disadvantage of NMF in failing to consider the manifold structure of a data set, graph regularized NMF (GrNMF) has been proposed by Cai et al. by constructing an affinity graph and searching for a matrix factorization that respects graph structure. Selecting a graph model and its corresponding parameters is critical for this strategy. This process is usually carried out by cross-validation or discrete grid search, which are time consuming and prone to overfitting. In this paper, we propose a GrNMF, called MultiGrNMF, in which the intrinsic manifold is approximated by a linear combination of several graphs with different models and parameters inspired by ensemble manifold regularization. Factorization metrics and linear combination coefficients of graphs are determined simultaneously within a unified object function. They are alternately optimized in an iterative algorithm, thus resulting in a novel data representation algorithm. Extensive experiments on a protein subcellular localization task and an Alzheimer\\'s disease diagnosis task demonstrate the effectiveness of the proposed algorithm. © 2013 Elsevier Ltd. All rights reserved.

  19. Supporting Regularized Logistic Regression Privately and Efficiently.

    Directory of Open Access Journals (Sweden)

    Wenfa Li

    Full Text Available As one of the most popular statistical and machine learning models, logistic regression with regularization has found wide adoption in biomedicine, social sciences, information technology, and so on. These domains often involve data of human subjects that are contingent upon strict privacy regulations. Concerns over data privacy make it increasingly difficult to coordinate and conduct large-scale collaborative studies, which typically rely on cross-institution data sharing and joint analysis. Our work here focuses on safeguarding regularized logistic regression, a widely-used statistical model while at the same time has not been investigated from a data security and privacy perspective. We consider a common use scenario of multi-institution collaborative studies, such as in the form of research consortia or networks as widely seen in genetics, epidemiology, social sciences, etc. To make our privacy-enhancing solution practical, we demonstrate a non-conventional and computationally efficient method leveraging distributing computing and strong cryptography to provide comprehensive protection over individual-level and summary data. Extensive empirical evaluations on several studies validate the privacy guarantee, efficiency and scalability of our proposal. We also discuss the practical implications of our solution for large-scale studies and applications from various disciplines, including genetic and biomedical studies, smart grid, network analysis, etc.

  20. Maze navigation by honeybees: learning path regularity.

    Science.gov (United States)

    Zhang, S; Mizutani, A; Srinivasan, M V

    2000-01-01

    We investigated the ability of honeybees to learn mazes of four types: constant-turn mazes, in which the appropriate turn is always in the same direction in each decision chamber; zig-zag mazes, in which the appropriate turn is alternately left and right in successive decision chambers; irregular mazes, in which there is no readily apparent pattern to the turns; and variable irregular mazes, in which the bees were trained to learn several irregular mazes simultaneously. The bees were able to learn to navigate all four types of maze. Performance was best in the constant-turn mazes, somewhat poorer in the zig-zag mazes, poorer still in the irregular mazes, and poorest in the variable irregular mazes. These results demonstrate that bees do not navigate such mazes simply by memorizing the entire sequence of appropriate turns. Rather, performance in the various configurations depends on the existence of regularity in the structure of the maze and on the ease with which this regularity is recognized and learned.

  1. Handicap Labelings of 4-Regular Graphs

    Directory of Open Access Journals (Sweden)

    Petr Kovar

    2017-01-01

    Full Text Available Let G be a simple graph, let f : V(G→{1,2,...,|V(G|} be a bijective mapping. The weight of v ∈ V(G is the sum of labels of all vertices adjacent to v. We say that f is a distance magic labeling of G if the weight of every vertex is the same constant k and we say that f is a handicap magic labeling of G if the weight of every vertex v is l + f(v for some constant l. Graphs that allow such labelings are called distance magic or handicap, respectively. Distance magic and handicap labelings of regular graphs are used for scheduling incomplete tournaments. While distance magic labelings correspond to so called equalized tournaments, handicap labelings can be used to schedule incomplete tournaments that are more challenging to stronger teams or players, hence they increase competition and yield attractive schemes in which every games counts. We summarize known results on distance magic and handicap labelings and construct a new infinite class of 4-regular handicap graphs.

  2. From Regular to Strictly Locally Testable Languages

    Directory of Open Access Journals (Sweden)

    Stefano Crespi Reghizzi

    2011-08-01

    Full Text Available A classical result (often credited to Y. Medvedev states that every language recognized by a finite automaton is the homomorphic image of a local language, over a much larger so-called local alphabet, namely the alphabet of the edges of the transition graph. Local languages are characterized by the value k=2 of the sliding window width in the McNaughton and Papert's infinite hierarchy of strictly locally testable languages (k-slt. We generalize Medvedev's result in a new direction, studying the relationship between the width and the alphabetic ratio telling how much larger the local alphabet is. We prove that every regular language is the image of a k-slt language on an alphabet of doubled size, where the width logarithmically depends on the automaton size, and we exhibit regular languages for which any smaller alphabetic ratio is insufficient. More generally, we express the trade-off between alphabetic ratio and width as a mathematical relation derived from a careful encoding of the states. At last we mention some directions for theoretical development and application.

  3. The Existence of Quasi Regular and Bi-Regular Self-Complementary 3-Uniform Hypergraphs

    Directory of Open Access Journals (Sweden)

    Kamble Lata N.

    2016-05-01

    Full Text Available A k-uniform hypergraph H = (V ;E is called self-complementary if there is a permutation σ : V → V , called a complementing permutation, such that for every k-subset e of V , e ∈ E if and only if σ(e ∉ E. In other words, H is isomorphic with H′ = (V ; V(k − E. In this paper we define a bi-regular hypergraph and prove that there exists a bi-regular self-complementary 3-uniform hypergraph on n vertices if and only if n is congruent to 0 or 2 modulo 4. We also prove that there exists a quasi regular self-complementary 3-uniform hypergraph on n vertices if and only if n is congruent to 0 modulo 4.

  4. UNIVERSAL REGULAR AUTONOMOUS ASYNCHRONOUS SYSTEMS: ω-LIMIT SETS, INVARIANCE AND BASINS OF ATTRACTION

    Directory of Open Access Journals (Sweden)

    Serban Vlad

    2011-07-01

    Full Text Available The asynchronous systems are the non-deterministic real timebinarymodels of the asynchronous circuits from electrical engineering.Autonomy means that the circuits and their models have no input.Regularity means analogies with the dynamical systems, thus such systems may be considered to be real time dynamical systems with a’vector field’, Universality refers to the case when the state space of the system is the greatest possible in the sense of theinclusion. The purpose of this paper is that of defining, by analogy with the dynamical systems theory, the omega-limit sets, the invariance and the basins of attraction of the universal regular autonomous asynchronous systems.

  5. Abel transforms with low regularity with applications to x-ray tomography on spherically symmetric manifolds

    Science.gov (United States)

    de Hoop, Maarten V.; Ilmavirta, Joonas

    2017-12-01

    We study ray transforms on spherically symmetric manifolds with a piecewise C1, 1 metric. Assuming the Herglotz condition, the x-ray transform is injective on the space of L 2 functions on such manifolds. We also prove injectivity results for broken ray transforms (with and without periodicity) on such manifolds with a C1, 1 metric. To make these problems tractable in low regularity, we introduce and study a class of generalized Abel transforms and study their properties. This low regularity setting is relevant for geophysical applications.

  6. The patterning of retinal horizontal cells: normalizing the regularity index enhances the detection of genomic linkage

    Directory of Open Access Journals (Sweden)

    Patrick W. Keeley

    2014-10-01

    Full Text Available Retinal neurons are often arranged as non-random distributions called mosaics, as their somata minimize proximity to neighboring cells of the same type. The horizontal cells serve as an example of such a mosaic, but little is known about the developmental mechanisms that underlie their patterning. To identify genes involved in this process, we have used three different spatial statistics to assess the patterning of the horizontal cell mosaic across a panel of genetically distinct recombinant inbred strains. To avoid the confounding effect cell density, which varies two-fold across these different strains, we computed the real/random regularity ratio, expressing the regularity of a mosaic relative to a randomly distributed simulation of similarly sized cells. To test whether this latter statistic better reflects the variation in biological processes that contribute to horizontal cell spacing, we subsequently compared the genetic linkage for each of these two traits, the regularity index and the real/random regularity ratio, each computed from the distribution of nearest neighbor (NN distances and from the Voronoi domain (VD areas. Finally, we compared each of these analyses with another index of patterning, the packing factor. Variation in the regularity indexes, as well as their real/random regularity ratios, and the packing factor, mapped quantitative trait loci (QTL to the distal ends of Chromosomes 1 and 14. For the NN and VD analyses, we found that the degree of linkage was greater when using the real/random regularity ratio rather than the respective regularity index. Using informatic resources, we narrow the list of prospective genes positioned at these two intervals to a small collection of six genes that warrant further investigation to determine their potential role in shaping the patterning of the horizontal cell mosaic.

  7. Multiple Kernel Learning for adaptive graph regularized nonnegative matrix factorization

    KAUST Repository

    Wang, Jim Jing-Yan

    2012-01-01

    Nonnegative Matrix Factorization (NMF) has been continuously evolving in several areas like pattern recognition and information retrieval methods. It factorizes a matrix into a product of 2 low-rank non-negative matrices that will define parts-based, and linear representation of non-negative data. Recently, Graph regularized NMF (GrNMF) is proposed to find a compact representation, which uncovers the hidden semantics and simultaneously respects the intrinsic geometric structure. In GNMF, an affinity graph is constructed from the original data space to encode the geometrical information. In this paper, we propose a novel idea which engages a Multiple Kernel Learning approach into refining the graph structure that reflects the factorization of the matrix and the new data space. The GrNMF is improved by utilizing the graph refined by the kernel learning, and then a novel kernel learning method is introduced under the GrNMF framework. Our approach shows encouraging results of the proposed algorithm in comparison to the state-of-the-art clustering algorithms like NMF, GrNMF, SVD etc.

  8. On Some General Regularities of Formation of the Planetary Systems

    Directory of Open Access Journals (Sweden)

    Belyakov A. V.

    2014-01-01

    Full Text Available J.Wheeler’s geometrodynamic concept has been used, in which space continuum is considered as a topologically non-unitary coherent surface admitting the existence of transitions of the input-output kind between distant regions of the space in an additional dimension. This model assumes the existence of closed structures (micro- and macro- contours formed due to the balance between main interactions: gravitational, electric, magnetic, and inertial forces. It is such macrocontours that have been demonstrated to form — independently of their material basis — the essential structure of objects at various levels of organization of matter. On the basis of this concept in this paper basic regularities acting during formation planetary systems have been obtained. The existence of two sharply different types of planetary systems has been determined. The dependencies linking the masses of the planets, the diameters of the planets, the orbital radii of the planet, and the mass of the central body have been deduced. The possibility of formation of Earth-like planets near brown dwarfs has been grounded. The minimum mass of the planet, which may arise in the planetary system, has been defined.

  9. The use of adomian decomposition method for solving the regularized long-wave equation

    Energy Technology Data Exchange (ETDEWEB)

    El-Danaf, Talaat S. [Department of Mathematics, Faculty of Science, Menoufia University, Shiben El-Kom (Egypt); Ramadan, Mohamed A. [Department of Mathematics, Faculty of Science, Menoufia University, Shiben El-Kom (Egypt)] e-mail: mramadan@mailer.eun.eg; Abd Alaal, Faysal E.I. [Department of Mathematics, Faculty of Science, Menoufia University, Shiben El-Kom (Egypt)

    2005-11-01

    In this paper, an accurate method to obtain an approximate numerical solution for the nonlinear regularized long-wave (in short RLW) equation is considered. The theoretical analysis of the method is investigated. The performance and the accuracy of the algorithm are illustrated by solving two test examples of the problem. The obtained results are presented and compared with the analytical solutions. It is observed that only few terms of the series expansion are required to obtain approximate solutions with good accuracy.

  10. Explicit formulas for regularized products and series

    CERN Document Server

    Jorgenson, Jay; Goldfeld, Dorian

    1994-01-01

    The theory of explicit formulas for regularized products and series forms a natural continuation of the analytic theory developed in LNM 1564. These explicit formulas can be used to describe the quantitative behavior of various objects in analytic number theory and spectral theory. The present book deals with other applications arising from Gaussian test functions, leading to theta inversion formulas and corresponding new types of zeta functions which are Gaussian transforms of theta series rather than Mellin transforms, and satisfy additive functional equations. Their wide range of applications includes the spectral theory of a broad class of manifolds and also the theory of zeta functions in number theory and representation theory. Here the hyperbolic 3-manifolds are given as a significant example.

  11. Generalized equations of state and regular universes

    CERN Document Server

    Contreras, Felipe; González, Esteban

    2015-01-01

    We found non singular solutions for universes filled with a fluid which obey a Generalized Equation of State of the form $P(\\rho)=-A\\rho+\\gamma\\rho^{\\lambda}$. An emergent universe is obtained if $A=1$ and $\\lambda =1/2$. If the matter source is reinterpret as that of a scalar matter field with some potential, the corresponding potential is derived. For a closed universe, an exact bounce solution is found for $A=1/3$ and the same $\\lambda $. We also explore how the composition of theses universes can be interpreted in terms of known fluids. It is of interest to note that accelerated solutions previously found for the late time evolution also represent regular solutions at early times.

  12. Regularity and Complexity in Dynamical Systems

    CERN Document Server

    Luo, Albert C J

    2012-01-01

    Regularity and Complexity in Dynamical Systems describes periodic and chaotic behaviors in dynamical systems, including continuous, discrete, impulsive,discontinuous, and switching systems. In traditional analysis, the periodic and chaotic behaviors in continuous, nonlinear dynamical systems were extensively discussed even if unsolved. In recent years, there has been an increasing amount of interest in periodic and chaotic behaviors in discontinuous dynamical systems because such dynamical systems are prevalent in engineering. Usually,the smoothening of discontinuous dynamical system is adopted in order to use the theory of continuous dynamical systems. However, such technique cannot provide suitable results in such discontinuous systems. In this book, an alternative way is presented to discuss the periodic and chaotic behaviors in discontinuous dynamical systems. This book also: Illustrates new concepts and methodology in discontinuous dynamical systems Uses different ideas to describe complicated dynamical...

  13. Regularization destriping of remote sensing imagery

    Directory of Open Access Journals (Sweden)

    R. Basnayake

    2017-07-01

    Full Text Available We illustrate the utility of variational destriping for ocean color images from both multispectral and hyperspectral sensors. In particular, we examine data from a filter spectrometer, the Visible Infrared Imaging Radiometer Suite (VIIRS on the Suomi National Polar Partnership (NPP orbiter, and an airborne grating spectrometer, the Jet Population Laboratory's (JPL hyperspectral Portable Remote Imaging Spectrometer (PRISM sensor. We solve the destriping problem using a variational regularization method by giving weights spatially to preserve the other features of the image during the destriping process. The target functional penalizes the neighborhood of stripes (strictly, directionally uniform features while promoting data fidelity, and the functional is minimized by solving the Euler–Lagrange equations with an explicit finite-difference scheme. We show the accuracy of our method from a benchmark data set which represents the sea surface temperature off the coast of Oregon, USA. Technical details, such as how to impose continuity across data gaps using inpainting, are also described.

  14. Regularization destriping of remote sensing imagery

    Science.gov (United States)

    Basnayake, Ranil; Bollt, Erik; Tufillaro, Nicholas; Sun, Jie; Gierach, Michelle

    2017-07-01

    We illustrate the utility of variational destriping for ocean color images from both multispectral and hyperspectral sensors. In particular, we examine data from a filter spectrometer, the Visible Infrared Imaging Radiometer Suite (VIIRS) on the Suomi National Polar Partnership (NPP) orbiter, and an airborne grating spectrometer, the Jet Population Laboratory's (JPL) hyperspectral Portable Remote Imaging Spectrometer (PRISM) sensor. We solve the destriping problem using a variational regularization method by giving weights spatially to preserve the other features of the image during the destriping process. The target functional penalizes the neighborhood of stripes (strictly, directionally uniform features) while promoting data fidelity, and the functional is minimized by solving the Euler-Lagrange equations with an explicit finite-difference scheme. We show the accuracy of our method from a benchmark data set which represents the sea surface temperature off the coast of Oregon, USA. Technical details, such as how to impose continuity across data gaps using inpainting, are also described.

  15. Regularization of Instantaneous Frequency Attribute Computations

    Science.gov (United States)

    Yedlin, M. J.; Margrave, G. F.; Van Vorst, D. G.; Ben Horin, Y.

    2014-12-01

    We compare two different methods of computation of a temporally local frequency:1) A stabilized instantaneous frequency using the theory of the analytic signal.2) A temporally variant centroid (or dominant) frequency estimated from a time-frequency decomposition.The first method derives from Taner et al (1979) as modified by Fomel (2007) and utilizes the derivative of the instantaneous phase of the analytic signal. The second method computes the power centroid (Cohen, 1995) of the time-frequency spectrum, obtained using either the Gabor or Stockwell Transform. Common to both methods is the necessity of division by a diagonal matrix, which requires appropriate regularization.We modify Fomel's (2007) method by explicitly penalizing the roughness of the estimate. Following Farquharson and Oldenburg (2004), we employ both the L curve and GCV methods to obtain the smoothest model that fits the data in the L2 norm.Using synthetic data, quarry blast, earthquakes and the DPRK tests, our results suggest that the optimal method depends on the data. One of the main applications for this work is the discrimination between blast events and earthquakesFomel, Sergey. " Local seismic attributes." , Geophysics, 72.3 (2007): A29-A33.Cohen, Leon. " Time frequency analysis theory and applications." USA: Prentice Hall, (1995).Farquharson, Colin G., and Douglas W. Oldenburg. "A comparison of automatic techniques for estimating the regularization parameter in non-linear inverse problems." Geophysical Journal International 156.3 (2004): 411-425.Taner, M. Turhan, Fulton Koehler, and R. E. Sheriff. " Complex seismic trace analysis." Geophysics, 44.6 (1979): 1041-1063.

  16. Morphisms on infinite alphabets, countable states automata and regular sequences

    Science.gov (United States)

    Zhang, Jie-Meng; Chen, Jin; Guo, Ying-Jun; Wen, Zhi-Xiong

    2017-06-01

    In this paper, we prove that a class of regular sequences can be viewed as projections of fixed points of uniform morphisms on a countable alphabet, and also can be generated by countable states automata. Moreover, we prove that the regularity of some regular sequences is invariant under some codings.

  17. Exclusion of children with intellectual disabilities from regular ...

    African Journals Online (AJOL)

    Study investigated why teachers exclude children with intellectual disability from the regular classrooms in Nigeria. Participants were, 169 regular teachers randomly selected from Oyo and Ogun states. Questionnaire was used to collect data result revealed that 57.4% regular teachers could not cope with children with ID ...

  18. Dynamically self-regular quantum harmonic black holes

    Directory of Open Access Journals (Sweden)

    Euro Spallucci

    2015-04-01

    Full Text Available The recently proposed UV self-complete quantum gravity program is a new and very interesting way to envision Planckian/trans-Planckian physics. In this new framework, high energy scattering is dominated by the creation of micro black holes, and it is experimentally impossible to probe distances shorter than the horizon radius. In this letter we present a model which realizes this idea through the creation of self-regular quantum black holes admitting a minimal size extremal configuration. Their radius provides a dynamically generated minimal length acting as a universal short-distance cutoff. We propose a quantization scheme for this new kind of microscopic objects based on a Bohr-like approach, which does not require a detailed knowledge of quantum gravity. The resulting black hole quantum picture resembles the energy spectrum of a quantum harmonic oscillator. The mass of the extremal configuration plays the role of zero-point energy. Large quantum number re-establishes the classical black hole description. Finally, we also formulate a “quantum hoop conjecture” which is satisfied by all the mass eigenstates and sustains the existence of quantum black holes sourced by Gaussian matter distributions.

  19. Iron status of regular voluntary blood donors

    Directory of Open Access Journals (Sweden)

    Mahida Vilsu

    2008-01-01

    Full Text Available Background: Our blood bank is a regional blood transfusion centre, which accepts blood only from voluntary donors. Aim: The aim is to study iron status of regular voluntary donors who donated their blood at least twice in a year. Materials and Methods: Prior to blood donation, blood samples of 220 male and 30 female voluntary donors were collected. Control included 100 each male and female healthy individuals in the 18- to 60-year age group, who never donated blood and did not have any chronic infection. In the study and control groups, about 10% subjects consumed non-vegetarian diet. After investigation, 85 males and 56 females having haemoglobin (Hb levels above 12.5 g/dl were selected as controls. Donors were divided into ≤10, 11-20, 21-50 and> 50 blood donation categories. Majority of the donors in> 50 donation category donated blood four times in a year, whereas the remaining donors donated two to three times per year. Haematological parameters were measured on fully automatic haematology analyzer, serum iron and total iron-binding capacity (TIBC by biochemical methods, ferritin using ELISA kits and transferrin using immunoturbidometry kits. Iron/TIBC ratio x 100 gave percentage of transferrin saturation value. Statistical Analysis: Statistical evaluation was done by mean, standard deviation, pair t -test, χ2 and anova ( F -test. Results: Preliminary analysis revealed that there was no significant difference in the iron profile of vegetarian and non-vegetarian subjects or controls and the donors donating < 20 times. Significant increase or decrease was observed in mean values of various haematological and iron parameters in donors who donated blood for> 20 times ( P < 0.001, compared to controls. Anaemia, iron deficiency and depletion of iron stores were more prevalent in female donors ( P < 0.05 compared to males and especially in those male donors who donated their blood for more than 20 times. Conclusion: Regular voluntary blood

  20. Multiconductor Short/Open Cable Tester

    Science.gov (United States)

    Eichenberg, Dennis

    1994-01-01

    Frequent or regular testing of multiconductor cables terminated in multipin conductors tedious, if not impossible, task. This inexpensive circuit simplifies open/short testing and is amenable to automation. In operation, pair of connectors selected to match pair of connectors installed on each of cables to be tested. As many connectors accommodated as required, and each can have as many conductors as required. Testing technique implemented with this circuit automated easily with electronic controls and computer interface. Printout provides status of each conductor in cable, indicating which, if any, of conductors has open or short circuit.

  1. Public space, time and space of change: Lisbon and Barcelona

    Directory of Open Access Journals (Sweden)

    Claudia Sisti

    2009-04-01

    Using this method of analysis space / time allows us to demonstrate how different contexts and times of intervention, correspond to different types of public space and how the concept of public space is to metamorphose paradigms that can be set in a short time. What next?

  2. A regularity-based modeling of oil borehole logs

    Science.gov (United States)

    Gaci, Said; Zaourar, Naima

    2013-04-01

    Multifractional Brownian motions (mBms) are successfully used to describe borehole logs behavior. These local fractal models allow to investigate the depth-evolution of regularity of the logs, quantified by the Hölder exponent (H). In this study, a regularity analysis is carried out on datasets recorded in Algerian oil boreholes located in different geological settings. The obtained regularity profiles show a clear correlation with lithology. Each lithological discontinuity corresponds to a jump in H value. Moreover, for a given borehole, all the regularity logs are significantly correlated and lead to similar lithological segmentations. Therefore, the Hölderian regularity is a robust property which can be used to characterize lithological heterogeneities. However, this study does not draw any relation between the recorded physical property and its estimated regularity degree for all the analyzed logs. Keywords: well logs, regularity, Hölder exponent, multifractional Brownian motion

  3. Intelligent analysis of chaos roughness in regularity of walk for a two legged robot

    Energy Technology Data Exchange (ETDEWEB)

    Kaygisiz, Burak H. [Guidance and Control Division, TUBITAK-SAGE, 684 Sokak anka Evleri No. 67/30, Cayyolu, Ankara (Turkey)]. E-mail: burak.kaygisiz@gmail.com; Erkmen, Ismet [Electrical and Electronics Engineering, Middle East Technical University (Turkey)]. E-mail: erkmen@metu.edu.tr; Erkmen, Aydan M. [Electrical and Electronics Engineering, Middle East Technical University (Turkey)]. E-mail: aydan@metu.edu.tr

    2006-07-15

    We describe in this paper a new approach to the identification of the chaotic boundaries of regular (periodic and quasiperiodic) regions in nonlinear systems, using cell mapping equipped with measures of fractal dimension and rough sets. The proposed fractal-rough set approach considers a state space divided into cells where cell trajectories are determined using cell to cell mapping technique. All image cells in the state space, equipped with their individual fractal dimension are then classified as being members of lower approximation, upper approximation or boundary region of regular regions with the help of rough set theory. The rough set with fractal dimension as its attribute is used to model the uncertainty of the regular regions, treated as sets of cells in this paper. This uncertainty is then smoothed by a reinforcement learning algorithm in order to enrich regular regions that are used for control. Our approach is applied to the walking control of a two legged robot, which fails very frequently due to chaotic behavior.

  4. Regularities and irregularities in order flow data

    Science.gov (United States)

    Theissen, Martin; Krause, Sebastian M.; Guhr, Thomas

    2017-11-01

    We identify and analyze statistical regularities and irregularities in the recent order flow of different NASDAQ stocks, focusing on the positions where orders are placed in the order book. This includes limit orders being placed outside of the spread, inside the spread and (effective) market orders. Based on the pairwise comparison of the order flow of different stocks, we perform a clustering of stocks into groups with similar behavior. This is useful to assess systemic aspects of stock price dynamics. We find that limit order placement inside the spread is strongly determined by the dynamics of the spread size. Most orders, however, arrive outside of the spread. While for some stocks order placement on or next to the quotes is dominating, deeper price levels are more important for other stocks. As market orders are usually adjusted to the quote volume, the impact of market orders depends on the order book structure, which we find to be quite diverse among the analyzed stocks as a result of the way limit order placement takes place.

  5. Flip to Regular Triangulation and Convex Hull.

    Science.gov (United States)

    Gao, Mingcen; Cao, Thanh-Tung; Tan, Tiow-Seng

    2017-02-01

    Flip is a simple and local operation to transform one triangulation to another. It makes changes only to some neighboring simplices, without considering any attribute or configuration global in nature to the triangulation. Thanks to this characteristic, several flips can be independently applied to different small, non-overlapping regions of one triangulation. Such operation is favored when designing algorithms for data-parallel, massively multithreaded hardware, such as the GPU. However, most existing flip algorithms are designed to be executed sequentially, and usually need some restrictions on the execution order of flips, making them hard to be adapted to parallel computation. In this paper, we present an in depth study of flip algorithms in low dimensions, with the emphasis on the flexibility of their execution order. In particular, we propose a series of provably correct flip algorithms for regular triangulation and convex hull in 2D and 3D, with implementations for both CPUs and GPUs. Our experiment shows that our GPU implementation for constructing these structures from a given point set achieves up to two orders of magnitude of speedup over other popular single-threaded CPU implementation of existing algorithms.

  6. Regularities development of entrepreneurial structures in regions

    Directory of Open Access Journals (Sweden)

    Julia Semenovna Pinkovetskaya

    2012-12-01

    Full Text Available Consider regularities and tendencies for the three types of entrepreneurial structures — small enterprises, medium enterprises and individual entrepreneurs. The aim of the research was to confirm the possibilities of describing indicators of aggregate entrepreneurial structures with the use of normal law distribution functions. Presented proposed by the author the methodological approach and results of construction of the functions of the density distribution for the main indicators for the various objects: the Russian Federation, regions, as well as aggregates ofentrepreneurial structures, specialized in certain forms ofeconomic activity. All the developed functions, as shown by the logical and statistical analysis, are of high quality and well-approximate the original data. In general, the proposed methodological approach is versatile and can be used in further studies of aggregates of entrepreneurial structures. The received results can be applied in solving a wide range of problems justify the need for personnel and financial resources at the federal, regional and municipal levels, as well as the formation of plans and forecasts of development entrepreneurship and improvement of this sector of the economy.

  7. Toroidal regularization of the guiding center Lagrangian

    Science.gov (United States)

    Burby, J. W.; Ellison, C. L.

    2017-11-01

    In the Lagrangian theory of guiding center motion, an effective magnetic field B*=B +(m /e )v∥∇× b appears prominently in the equations of motion. Because the parallel component of this field can vanish, there is a range of parallel velocities where the Lagrangian guiding center equations of motion are either ill-defined or very badly behaved. Moreover, the velocity dependence of B* greatly complicates the identification of canonical variables and therefore the formulation of symplectic integrators for guiding center dynamics. This letter introduces a simple coordinate transformation that alleviates both these problems simultaneously. In the new coordinates, the Liouville volume element is equal to the toroidal contravariant component of the magnetic field. Consequently, the large-velocity singularity is completely eliminated. Moreover, passing from the new coordinate system to canonical coordinates is extremely simple, even if the magnetic field is devoid of flux surfaces. We demonstrate the utility of this approach in regularizing the guiding center Lagrangian by presenting a new and stable one-step variational integrator for guiding centers moving in arbitrary time-dependent electromagnetic fields.

  8. Identifying Cognitive States Using Regularity Partitions.

    Science.gov (United States)

    Pappas, Ioannis; Pardalos, Panos

    2015-01-01

    Functional Magnetic Resonance (fMRI) data can be used to depict functional connectivity of the brain. Standard techniques have been developed to construct brain networks from this data; typically nodes are considered as voxels or sets of voxels with weighted edges between them representing measures of correlation. Identifying cognitive states based on fMRI data is connected with recording voxel activity over a certain time interval. Using this information, network and machine learning techniques can be applied to discriminate the cognitive states of the subjects by exploring different features of data. In this work we wish to describe and understand the organization of brain connectivity networks under cognitive tasks. In particular, we use a regularity partitioning algorithm that finds clusters of vertices such that they all behave with each other almost like random bipartite graphs. Based on the random approximation of the graph, we calculate a lower bound on the number of triangles as well as the expectation of the distribution of the edges in each subject and state. We investigate the results by comparing them to the state of the art algorithms for exploring connectivity and we argue that during epochs that the subject is exposed to stimulus, the inspected part of the brain is organized in an efficient way that enables enhanced functionality.

  9. Identifying Cognitive States Using Regularity Partitions.

    Directory of Open Access Journals (Sweden)

    Ioannis Pappas

    Full Text Available Functional Magnetic Resonance (fMRI data can be used to depict functional connectivity of the brain. Standard techniques have been developed to construct brain networks from this data; typically nodes are considered as voxels or sets of voxels with weighted edges between them representing measures of correlation. Identifying cognitive states based on fMRI data is connected with recording voxel activity over a certain time interval. Using this information, network and machine learning techniques can be applied to discriminate the cognitive states of the subjects by exploring different features of data. In this work we wish to describe and understand the organization of brain connectivity networks under cognitive tasks. In particular, we use a regularity partitioning algorithm that finds clusters of vertices such that they all behave with each other almost like random bipartite graphs. Based on the random approximation of the graph, we calculate a lower bound on the number of triangles as well as the expectation of the distribution of the edges in each subject and state. We investigate the results by comparing them to the state of the art algorithms for exploring connectivity and we argue that during epochs that the subject is exposed to stimulus, the inspected part of the brain is organized in an efficient way that enables enhanced functionality.

  10. Regularity and approximability of electronic wave functions

    CERN Document Server

    Yserentant, Harry

    2010-01-01

    The electronic Schrödinger equation describes the motion of N-electrons under Coulomb interaction forces in a field of clamped nuclei. The solutions of this equation, the electronic wave functions, depend on 3N variables, with three spatial dimensions for each electron. Approximating these solutions is thus inordinately challenging, and it is generally believed that a reduction to simplified models, such as those of the Hartree-Fock method or density functional theory, is the only tenable approach. This book seeks to show readers that this conventional wisdom need not be ironclad: the regularity of the solutions, which increases with the number of electrons, the decay behavior of their mixed derivatives, and the antisymmetry enforced by the Pauli principle contribute properties that allow these functions to be approximated with an order of complexity which comes arbitrarily close to that for a system of one or two electrons. The text is accessible to a mathematical audience at the beginning graduate level as...

  11. Multiparametric tissue abnormality characterization using manifold regularization

    Science.gov (United States)

    Batmanghelich, Kayhan; Wu, Xiaoying; Zacharaki, Evangelia; Markowitz, Clyde E.; Davatzikos, Christos; Verma, Ragini

    2008-03-01

    Tissue abnormality characterization is a generalized segmentation problem which aims at determining a continuous score that can be assigned to the tissue which characterizes the extent of tissue deterioration, with completely healthy tissue being one end of the spectrum and fully abnormal tissue such as lesions, being on the other end. Our method is based on the assumptions that there is some tissue that is neither fully healthy or nor completely abnormal but lies in between the two in terms of abnormality; and that the voxel-wise score of tissue abnormality lies on a spatially and temporally smooth manifold of abnormality. Unlike in a pure classification problem which associates an independent label with each voxel without considering correlation with neighbors, or an absolute clustering problem which does not consider a priori knowledge of tissue type, we assume that diseased and healthy tissue lie on a manifold that encompasses the healthy tissue and diseased tissue, stretching from one to the other. We propose a semi-supervised method for determining such as abnormality manifold, using multi-parametric features incorporated into a support vector machine framework in combination with manifold regularization. We apply the framework towards the characterization of tissue abnormality to brains of multiple sclerosis patients.

  12. Maximal regularity for parabolic equations with measurable dependence on time and applications

    NARCIS (Netherlands)

    Gallarati, C.

    2017-01-01

    The subject of this thesis is the study of maximal Lp-regularity of the Cauchy problem u'(t)+A(t)u(t)=f(t), t∈ (0,T), u(0)=x.
    We assume (A(t))_{t∈ (0,T)} to be a family of closed operators on a Banach space X0, with constant domain D(A(t))=X1 for every t∈ (0,T).

  13. Scaling Non-Regular Shared-Memory Codes by Reusing Custom Loop Schedules

    OpenAIRE

    Nikolopoulos, Dimitrios S.; Ernest Artiaga; Eduard Ayguadé; Jesús Labarta

    2003-01-01

    In this paper we explore the idea of customizing and reusing loop schedules to improve the scalability of non-regular numerical codes in shared-memory architectures with non-uniform memory access latency. The main objective is to implicitly setup affinity links between threads and data, by devising loop schedules that achieve balanced work distribution within irregular data spaces and reusing them as much as possible along the execution of the program for better memory access locality. This t...

  14. Color normalization of histology slides using graph regularized sparse NMF

    Science.gov (United States)

    Sha, Lingdao; Schonfeld, Dan; Sethi, Amit

    2017-03-01

    Computer based automatic medical image processing and quantification are becoming popular in digital pathology. However, preparation of histology slides can vary widely due to differences in staining equipment, procedures and reagents, which can reduce the accuracy of algorithms that analyze their color and texture information. To re- duce the unwanted color variations, various supervised and unsupervised color normalization methods have been proposed. Compared with supervised color normalization methods, unsupervised color normalization methods have advantages of time and cost efficient and universal applicability. Most of the unsupervised color normaliza- tion methods for histology are based on stain separation. Based on the fact that stain concentration cannot be negative and different parts of the tissue absorb different stains, nonnegative matrix factorization (NMF), and particular its sparse version (SNMF), are good candidates for stain separation. However, most of the existing unsupervised color normalization method like PCA, ICA, NMF and SNMF fail to consider important information about sparse manifolds that its pixels occupy, which could potentially result in loss of texture information during color normalization. Manifold learning methods like Graph Laplacian have proven to be very effective in interpreting high-dimensional data. In this paper, we propose a novel unsupervised stain separation method called graph regularized sparse nonnegative matrix factorization (GSNMF). By considering the sparse prior of stain concentration together with manifold information from high-dimensional image data, our method shows better performance in stain color deconvolution than existing unsupervised color deconvolution methods, especially in keeping connected texture information. To utilized the texture information, we construct a nearest neighbor graph between pixels within a spatial area of an image based on their distances using heat kernal in lαβ space. The

  15. Stability of the Regular Hayward Thin-Shell Wormholes

    Directory of Open Access Journals (Sweden)

    M. Sharif

    2016-01-01

    Full Text Available The aim of this paper is to construct regular Hayward thin-shell wormholes and analyze their stability. We adopt Israel formalism to calculate surface stresses of the shell and check the null and weak energy conditions for the constructed wormholes. It is found that the stress-energy tensor components violate the null and weak energy conditions leading to the presence of exotic matter at the throat. We analyze the attractive and repulsive characteristics of wormholes corresponding to ar>0 and ar<0, respectively. We also explore stability conditions for the existence of traversable thin-shell wormholes with arbitrarily small amount of fluid describing cosmic expansion. We find that the space-time has nonphysical regions which give rise to event horizon for 0

  16. High-order regularization in lattice-Boltzmann equations

    Science.gov (United States)

    Mattila, Keijo K.; Philippi, Paulo C.; Hegele, Luiz A.

    2017-04-01

    A lattice-Boltzmann equation (LBE) is the discrete counterpart of a continuous kinetic model. It can be derived using a Hermite polynomial expansion for the velocity distribution function. Since LBEs are characterized by discrete, finite representations of the microscopic velocity space, the expansion must be truncated and the appropriate order of truncation depends on the hydrodynamic problem under investigation. Here we consider a particular truncation where the non-equilibrium distribution is expanded on a par with the equilibrium distribution, except that the diffusive parts of high-order non-equilibrium moments are filtered, i.e., only the corresponding advective parts are retained after a given rank. The decomposition of moments into diffusive and advective parts is based directly on analytical relations between Hermite polynomial tensors. The resulting, refined regularization procedure leads to recurrence relations where high-order non-equilibrium moments are expressed in terms of low-order ones. The procedure is appealing in the sense that stability can be enhanced without local variation of transport parameters, like viscosity, or without tuning the simulation parameters based on embedded optimization steps. The improved stability properties are here demonstrated using the perturbed double periodic shear layer flow and the Sod shock tube problem as benchmark cases.

  17. Graph Regularized Nonnegative Matrix Factorization with Sparse Coding

    Directory of Open Access Journals (Sweden)

    Chuang Lin

    2015-01-01

    Full Text Available In this paper, we propose a sparseness constraint NMF method, named graph regularized matrix factorization with sparse coding (GRNMF_SC. By combining manifold learning and sparse coding techniques together, GRNMF_SC can efficiently extract the basic vectors from the data space, which preserves the intrinsic manifold structure and also the local features of original data. The target function of our method is easy to propose, while the solving procedures are really nontrivial; in the paper we gave the detailed derivation of solving the target function and also a strict proof of its convergence, which is a key contribution of the paper. Compared with sparseness constrained NMF and GNMF algorithms, GRNMF_SC can learn much sparser representation of the data and can also preserve the geometrical structure of the data, which endow it with powerful discriminating ability. Furthermore, the GRNMF_SC is generalized as supervised and unsupervised models to meet different demands. Experimental results demonstrate encouraging results of GRNMF_SC on image recognition and clustering when comparing with the other state-of-the-art NMF methods.

  18. Descriptor Learning via Supervised Manifold Regularization for Multioutput Regression.

    Science.gov (United States)

    Zhen, Xiantong; Yu, Mengyang; Islam, Ali; Bhaduri, Mousumi; Chan, Ian; Li, Shuo

    2017-09-01

    Multioutput regression has recently shown great ability to solve challenging problems in both computer vision and medical image analysis. However, due to the huge image variability and ambiguity, it is fundamentally challenging to handle the highly complex input-target relationship of multioutput regression, especially with indiscriminate high-dimensional representations. In this paper, we propose a novel supervised descriptor learning (SDL) algorithm for multioutput regression, which can establish discriminative and compact feature representations to improve the multivariate estimation performance. The SDL is formulated as generalized low-rank approximations of matrices with a supervised manifold regularization. The SDL is able to simultaneously extract discriminative features closely related to multivariate targets and remove irrelevant and redundant information by transforming raw features into a new low-dimensional space aligned to targets. The achieved discriminative while compact descriptor largely reduces the variability and ambiguity for multioutput regression, which enables more accurate and efficient multivariate estimation. We conduct extensive evaluation of the proposed SDL on both synthetic data and real-world multioutput regression tasks for both computer vision and medical image analysis. Experimental results have shown that the proposed SDL can achieve high multivariate estimation accuracy on all tasks and largely outperforms the algorithms in the state of the arts. Our method establishes a novel SDL framework for multioutput regression, which can be widely used to boost the performance in different applications.

  19. Learning optimal spatially-dependent regularization parameters in total variation image denoising

    Science.gov (United States)

    Van Chung, Cao; De los Reyes, J. C.; Schönlieb, C. B.

    2017-07-01

    We consider a bilevel optimization approach in function space for the choice of spatially dependent regularization parameters in TV image denoising models. First- and second-order optimality conditions for the bilevel problem are studied when the spatially-dependent parameter belongs to the Sobolev space {{H}1}≤ft(Ω \\right) . A combined Schwarz domain decomposition-semismooth Newton method is proposed for the solution of the full optimality system and local superlinear convergence of the semismooth Newton method is verified. Exhaustive numerical computations are finally carried out to show the suitability of the approach.

  20. Analysis in Banach spaces

    CERN Document Server

    Hytönen, Tuomas; Veraar, Mark; Weis, Lutz

    2016-01-01

    The present volume develops the theory of integration in Banach spaces, martingales and UMD spaces, and culminates in a treatment of the Hilbert transform, Littlewood-Paley theory and the vector-valued Mihlin multiplier theorem. Over the past fifteen years, motivated by regularity problems in evolution equations, there has been tremendous progress in the analysis of Banach space-valued functions and processes. The contents of this extensive and powerful toolbox have been mostly scattered around in research papers and lecture notes. Collecting this diverse body of material into a unified and accessible presentation fills a gap in the existing literature. The principal audience that we have in mind consists of researchers who need and use Analysis in Banach Spaces as a tool for studying problems in partial differential equations, harmonic analysis, and stochastic analysis. Self-contained and offering complete proofs, this work is accessible to graduate students and researchers with a background in functional an...

  1. Ombud's corner: space invaders

    CERN Document Server

    Sudeshna Datta-Cockerill

    2015-01-01

    When normal communication breaks down and there is no sharing anymore, office-mates can become ‘space invaders’. Very often, the situation can be resolved effectively by taking just a few simple steps...   The lack of office space at CERN is a permanent issue that the various departments regularly have to address. As a result, very often this precious space where we spend the entire day has to be shared with other colleagues. Office-mates may come from different backgrounds and cultures and may have very different habits and behaviours; they may also have different activities during the day, sometimes requiring unusual, (perhaps even strange?) interactions with the space they occupy; finally, their presence might be irregular, making it very difficult for us to establish a stable relationship. Mark and Claire share an office as well as some professional activities. In the beginning, the relationship seems to work normally but, over time, the communication between them ste...

  2. Regular boundary value problems for the heat equation with scalar parameters

    Science.gov (United States)

    Kalmenov, Tynysbek Sh.; Besbaev, Gani; Medetbekova, Ryskul

    2017-09-01

    This paper belongs to the general theory of well-posed initial-boundary value problems for parabolic equations. The classical construction of a boundary value problem is as follows: an equation and a boundary condition are given. It is necessary to investigate the solvability of this problem and properties of the solution if it exists (in the sense of belonging to some space). Beginning with the papers of J. von Neumann and M.I. Vishik (1951), there exists another more general approach: an equation and a space are given, right-hand parts of the equation and boundary conditions, and a solution must belong to this space. It is necessary to describe all the boundary conditions, for which the problem is correctly solvable in this space. Further development of this theory was given by M. Otelbaev, who constructed a complete theory for ordinary differential operators and for symmetric semibounded operators in a Banach space. In this paper we find regular solution of the regular boundary problem for the heat equation with scalar parameter.

  3. Tanning beauty ideals among Swedish adults who exercise regularly

    OpenAIRE

    Cedercreutz, Isabella

    2016-01-01

    Tanning beauty ideals among Swedish adults who exercise regularly Introduction: The majority of the Swedish population exercise regularly, and it has been reported that they believe having an attractive body is important. While research has shown that Swedes wish to be tanned, it is unknown whether there are any correlations to their exercise habits. Aims: The primary aim was to determine tanned skin tone ideals and tanning beauty ideals among regularly exercising Swedish adults. Associati...

  4. Existence domains for invariant reactions in binary regular solution ...

    Indian Academy of Sciences (India)

    Unknown

    two phases (e.g. a liquid and a solid phase) has been examined using the regular solution model. The necessary conditions for the ... Binary phase diagrams; invariant reactions; regular solution model. 1. Introduction. Using the regular ...... Nb–Ta, Nb–W, Os–Re, Os–Ru, Pd–Pt, Pt–Rh,. Re–Ru, Ta–W, V–W]. R + T MN [Cr–V, ...

  5. Phase-regularized polygon computer-generated holograms.

    Science.gov (United States)

    Im, Dajeong; Moon, Eunkyoung; Park, Yohan; Lee, Deokhwan; Hahn, Joonku; Kim, Hwi

    2014-06-15

    The dark-line defect problem in the conventional polygon computer-generated hologram (CGH) is addressed. To resolve this problem, we clarify the physical origin of the defect and address the concept of phase-regularization. A novel synthesis algorithm for a phase-regularized polygon CGH for generating photorealistic defect-free holographic images is proposed. The optical reconstruction results of the phase-regularized polygon CGHs without the dark-line defects are presented.

  6. Sleep-Wake Actigraphy and Light Exposure During Spaceflight - Short

    Science.gov (United States)

    Czeisler, Charles A.; Wright, Kenneth P., Jr.; Ronda, Joseph

    2009-01-01

    Sleep-Wake Actigraphy and Light Exposure During Spaceflight - Short (Sleep-Short) will examine the effects of spaceflight on the sleep of the astronauts during space shuttle missions. Advancing state-of-the-art technology for monitoring, diagnosing and assessing treatment of sleep patterns is vital to treating insomnia on Earth and in space.

  7. Boolean Circuit Complexity of Regular Languages

    Directory of Open Access Journals (Sweden)

    Maris Valdats

    2014-05-01

    Full Text Available In this paper we define a new descriptional complexity measure for Deterministic Finite Automata, BC-complexity, as an alternative to the state complexity. We prove that for two DFAs with the same number of states BC-complexity can differ exponentially. In some cases minimization of DFA can lead to an exponential increase in BC-complexity, on the other hand BC-complexity of DFAs with a large state space which are obtained by some standard constructions (determinization of NFA, language operations, is reasonably small. But our main result is the analogue of the "Shannon effect" for finite automata: almost all DFAs with a fixed number of states have BC-complexity that is close to the maximum.

  8. The entire regularization path for the support vector domain description

    DEFF Research Database (Denmark)

    Sjöstrand, Karl; Larsen, Rasmus

    2006-01-01

    -class support vector machine classifier. Recently, it was shown that the regularization path of the support vector machine is piecewise linear, and that the entire path can be computed efficiently. This pa- per shows that this property carries over to the support vector domain description. Using our results...... the solution to the one-class classification can be solved for any amount of regularization with roughly the same computational complexity required to solve for a particularly value of the regularization parameter. The possibility of evaluating the results for any amount of regularization not only offers more...

  9. (2 + 1)-dimensional regular black holes with nonlinear electrodynamics sources

    Science.gov (United States)

    He, Yun; Ma, Meng-Sen

    2017-11-01

    On the basis of two requirements: the avoidance of the curvature singularity and the Maxwell theory as the weak field limit of the nonlinear electrodynamics, we find two restricted conditions on the metric function of (2 + 1)-dimensional regular black hole in general relativity coupled with nonlinear electrodynamics sources. By the use of the two conditions, we obtain a general approach to construct (2 + 1)-dimensional regular black holes. In this manner, we construct four (2 + 1)-dimensional regular black holes as examples. We also study the thermodynamic properties of the regular black holes and verify the first law of black hole thermodynamics.

  10. The analyzation of 2D complicated regular polygon photonic lattice

    Science.gov (United States)

    Lv, Jing; Gao, Yuanmei

    2017-06-01

    We have numerically simulated the light intensity distribution, phase distribution, far-field diffraction of the two dimensional (2D) regular octagon and regular dodecagon lattices in detail. In addition, using the plane wave expansion (PWE) method, we numerically calculate the energy band of the two lattices. Both of the photonic lattices have the band gap. And the regular octagon lattice possesses the wide complete band gap while the regular dodecagon lattice has the incomplete gap. Moreover, we simulated the preliminary transmission image of photonic lattices. It may inspire the academic research both in light control and soliton.

  11. Adaptive Regularization of Neural Networks Using Conjugate Gradient

    DEFF Research Database (Denmark)

    Goutte, Cyril; Larsen, Jan

    1998-01-01

    Andersen et al. (1997) and Larsen et al. (1996, 1997) suggested a regularization scheme which iteratively adapts regularization parameters by minimizing validation error using simple gradient descent. In this contribution we present an improved algorithm based on the conjugate gradient technique........ Numerical experiments with feedforward neural networks successfully demonstrate improved generalization ability and lower computational cost......Andersen et al. (1997) and Larsen et al. (1996, 1997) suggested a regularization scheme which iteratively adapts regularization parameters by minimizing validation error using simple gradient descent. In this contribution we present an improved algorithm based on the conjugate gradient technique...

  12. Variability in Regularity: Mining Temporal Mobility Patterns in London, Singapore and Beijing Using Smart-Card Data.

    Directory of Open Access Journals (Sweden)

    Chen Zhong

    Full Text Available To discover regularities in human mobility is of fundamental importance to our understanding of urban dynamics, and essential to city and transport planning, urban management and policymaking. Previous research has revealed universal regularities at mainly aggregated spatio-temporal scales but when we zoom into finer scales, considerable heterogeneity and diversity is observed instead. The fundamental question we address in this paper is at what scales are the regularities we detect stable, explicable, and sustainable. This paper thus proposes a basic measure of variability to assess the stability of such regularities focusing mainly on changes over a range of temporal scales. We demonstrate this by comparing regularities in the urban mobility patterns in three world cities, namely London, Singapore and Beijing using one-week of smart-card data. The results show that variations in regularity scale as non-linear functions of the temporal resolution, which we measure over a scale from 1 minute to 24 hours thus reflecting the diurnal cycle of human mobility. A particularly dramatic increase in variability occurs up to the temporal scale of about 15 minutes in all three cities and this implies that limits exist when we look forward or backward with respect to making short-term predictions. The degree of regularity varies in fact from city to city with Beijing and Singapore showing higher regularity in comparison to London across all temporal scales. A detailed discussion is provided, which relates the analysis to various characteristics of the three cities. In summary, this work contributes to a deeper understanding of regularities in patterns of transit use from variations in volumes of travellers entering subway stations, it establishes a generic analytical framework for comparative studies using urban mobility data, and it provides key points for the management of variability by policy-makers intent on for making the travel experience more

  13. Variability in Regularity: Mining Temporal Mobility Patterns in London, Singapore and Beijing Using Smart-Card Data

    Science.gov (United States)

    Zhong, Chen; Batty, Michael; Manley, Ed; Wang, Jiaqiu; Wang, Zijia; Chen, Feng; Schmitt, Gerhard

    2016-01-01

    To discover regularities in human mobility is of fundamental importance to our understanding of urban dynamics, and essential to city and transport planning, urban management and policymaking. Previous research has revealed universal regularities at mainly aggregated spatio-temporal scales but when we zoom into finer scales, considerable heterogeneity and diversity is observed instead. The fundamental question we address in this paper is at what scales are the regularities we detect stable, explicable, and sustainable. This paper thus proposes a basic measure of variability to assess the stability of such regularities focusing mainly on changes over a range of temporal scales. We demonstrate this by comparing regularities in the urban mobility patterns in three world cities, namely London, Singapore and Beijing using one-week of smart-card data. The results show that variations in regularity scale as non-linear functions of the temporal resolution, which we measure over a scale from 1 minute to 24 hours thus reflecting the diurnal cycle of human mobility. A particularly dramatic increase in variability occurs up to the temporal scale of about 15 minutes in all three cities and this implies that limits exist when we look forward or backward with respect to making short-term predictions. The degree of regularity varies in fact from city to city with Beijing and Singapore showing higher regularity in comparison to London across all temporal scales. A detailed discussion is provided, which relates the analysis to various characteristics of the three cities. In summary, this work contributes to a deeper understanding of regularities in patterns of transit use from variations in volumes of travellers entering subway stations, it establishes a generic analytical framework for comparative studies using urban mobility data, and it provides key points for the management of variability by policy-makers intent on for making the travel experience more amenable. PMID:26872333

  14. Image super-resolution reconstruction based on regularization technique and guided filter

    Science.gov (United States)

    Huang, De-tian; Huang, Wei-qin; Gu, Pei-ting; Liu, Pei-zhong; Luo, Yan-min

    2017-06-01

    In order to improve the accuracy of sparse representation coefficients and the quality of reconstructed images, an improved image super-resolution algorithm based on sparse representation is presented. In the sparse coding stage, the autoregressive (AR) regularization and the non-local (NL) similarity regularization are introduced to improve the sparse coding objective function. A group of AR models which describe the image local structures are pre-learned from the training samples, and one or several suitable AR models can be adaptively selected for each image patch to regularize the solution space. Then, the image non-local redundancy is obtained by the NL similarity regularization to preserve edges. In the process of computing the sparse representation coefficients, the feature-sign search algorithm is utilized instead of the conventional orthogonal matching pursuit algorithm to improve the accuracy of the sparse coefficients. To restore image details further, a global error compensation model based on weighted guided filter is proposed to realize error compensation for the reconstructed images. Experimental results demonstrate that compared with Bicubic, L1SR, SISR, GR, ANR, NE + LS, NE + NNLS, NE + LLE and A + (16 atoms) methods, the proposed approach has remarkable improvement in peak signal-to-noise ratio, structural similarity and subjective visual perception.

  15. Asymptotic analysis of a pile-up of regular edge dislocation walls

    KAUST Repository

    Hall, Cameron L.

    2011-12-01

    The idealised problem of a pile-up of regular dislocation walls (that is, of planes each containing an infinite number of parallel, identical and equally spaced dislocations) was presented by Roy et al. [A. Roy, R.H.J. Peerlings, M.G.D. Geers, Y. Kasyanyuk, Materials Science and Engineering A 486 (2008) 653-661] as a prototype for understanding the importance of discrete dislocation interactions in dislocation-based plasticity models. They noted that analytic solutions for the dislocation wall density are available for a pile-up of regular screw dislocation walls, but that numerical methods seem to be necessary for investigating regular edge dislocation walls. In this paper, we use the techniques of discrete-to-continuum asymptotic analysis to obtain a detailed description of a pile-up of regular edge dislocation walls. To leading order, we find that the dislocation wall density is governed by a simple differential equation and that boundary layers are present at both ends of the pile-up. © 2011 Elsevier B.V.

  16. Feature extraction using regular expression in detecting proper ...

    African Journals Online (AJOL)

    Feature extraction using regular expression in detecting proper noun for Malay news articles based on KNN algorithm. S Sulaiman, R.A. Wahid, F Morsidi. Abstract. No Abstract. Keywords: data mining; named entity recognition; regular expression; natural language processing. Full Text: EMAIL FREE FULL TEXT EMAIL ...

  17. 39 CFR 3010.7 - Schedule of regular rate changes.

    Science.gov (United States)

    2010-07-01

    ... of mailers of each class of mail in developing the schedule. (e) Whenever the Postal Service deems it... 39 Postal Service 1 2010-07-01 2010-07-01 false Schedule of regular rate changes. 3010.7 Section... PRODUCTS General Provisions § 3010.7 Schedule of regular rate changes. (a) The Postal Service shall...

  18. Analytic regularization of the Yukawa model at finite temperature

    CERN Document Server

    Malbouisson, A P C; Svaiter, N F

    1996-01-01

    We analyse the one-loop fermionic contribution for the scalar effective potential in the temperature dependent Yukawa model. In order to regularize the model a mix between dimensional and analytic regularization procedures is used. We find a general expression for the fermionic contribution in arbitrary spacetime dimension. It is found that in D=3 this contribution is finite.

  19. Degree-regular triangulations of torus and Klein bottle

    Indian Academy of Sciences (India)

    R. Narasimhan (Krishtel eMaging) 1461 1996 Oct 15 13:05:22

    torial 2-manifolds are the boundaries of the tetrahedron, the octahedron, the icosahedron and the 6-vertex real projective plane [4, 5]. The combinatorial manifolds T3,3,0 and T6,2,2. (in Examples 2 and 3) are combinatorially regular. Schulte and Wills [10, 11] have con- structed two combinatorially regular triangulations of ...

  20. Inclusion Professional Development Model and Regular Middle School Educators

    Science.gov (United States)

    Royster, Otelia; Reglin, Gary L.; Losike-Sedimo, Nonofo

    2014-01-01

    The purpose of this study was to determine the impact of a professional development model on regular education middle school teachers' knowledge of best practices for teaching inclusive classes and attitudes toward teaching these classes. There were 19 regular education teachers who taught the core subjects. Findings for Research Question 1…

  1. On the Generating Power of Regularly Controlled Bidirectional Grammars

    NARCIS (Netherlands)

    Asveld, P.R.J.; Hogendorp, J.A.; Hogendorp, J.A.

    1991-01-01

    RCB-grammars or regularly controlled bidirectional grammars are context-free grammars of which the rules can be used in a productive and in a reductive fashion. In addition, the application of these rules is controlled by a regular language. Several modes of derivation can be distinguished for this

  2. On the Generating Power of Regularly Controlled Bidirectional Grammars

    NARCIS (Netherlands)

    Asveld, P.R.J.; Hogendorp, Jan Anne

    1989-01-01

    RCB-grammars or regularly controlled bidirectional grammars are context-free grammars of which the rules can be used in a productive and in a reductive fashion. In addition, the application of these rules is controlled by a regular language. Several modes of derivation can be distinguished for this

  3. Analysis of Logic Programs Using Regular Tree Languages

    DEFF Research Database (Denmark)

    Gallagher, John Patrick

    2012-01-01

    The eld of nite tree automata provides fundamental notations and tools for reasoning about set of terms called regular or recognizable tree languages. We consider two kinds of analysis using regular tree languages, applied to logic programs. The rst approach is to try to discover automatically...

  4. Strictly-regular number system and data structures

    DEFF Research Database (Denmark)

    Elmasry, Amr Ahmed Abd Elmoneim; Jensen, Claus; Katajainen, Jyrki

    2010-01-01

    We introduce a new number system that we call the strictly-regular system, which efficiently supports the operations: digit-increment, digit-decrement, cut, concatenate, and add. Compared to other number systems, the strictly-regular system has distinguishable properties. It is superior to the re...

  5. 3-D Projected L1 inversion of gravity data using truncated unbiased predictive risk estimator for regularization parameter estimation

    Science.gov (United States)

    Vatankhah, Saeed; Renaut, Rosemary A.; Ardestani, Vahid E.

    2017-09-01

    Sparse inversion of gravity data based on L1-norm regularization is discussed. An iteratively reweighted least squares algorithm is used to solve the problem. At each iteration the solution of a linear system of equations and the determination of a suitable regularization parameter are considered. The LSQR iteration is used to project the system of equations onto a smaller subspace that inherits the ill-conditioning of the full space problem. We show that the gravity kernel is only mildly to moderately ill-conditioned. Thus, while the dominant spectrum of the projected problem accurately approximates the dominant spectrum of the full space problem, the entire spectrum of the projected problem inherits the ill-conditioning of the full problem. Consequently, determining the regularization parameter based on the entire spectrum of the projected problem necessarily over compensates for the non-dominant portion of the spectrum and leads to inaccurate approximations for the full-space solution. In contrast, finding the regularization parameter using a truncated singular space of the projected operator is efficient and effective. Simulations for synthetic examples with noise demonstrate the approach using the method of unbiased predictive risk estimation for the truncated projected spectrum. The method is used on gravity data from the Mobrun ore body, northeast of Noranda, Quebec, Canada. The 3-D reconstructed model is in agreement with known drill-hole information.

  6. Predatory Short Selling

    OpenAIRE

    Markus K Brunnermeier; Martin Oehmke

    2013-01-01

    Financial institutions may be vulnerable to predatory short selling. When the stock of a financial institution is shorted aggressively, leverage constraints imposed by short-term creditors can force the institution to liquidate long-term investments at fire sale prices. For financial institutions that are sufficiently close to their leverage constraints, predatory short selling equilibria co-exist with no-liquidation equilibria (the vulnerability region) or may even be the unique equilibrium ...

  7. Impacts of regular and random noise on the behaviour, growth and development of larval Atlantic cod (Gadus morhua).

    Science.gov (United States)

    Nedelec, Sophie L; Simpson, Stephen D; Morley, Erica L; Nedelec, Brendan; Radford, Andrew N

    2015-10-22

    Anthropogenic noise impacts behaviour and physiology in many species, but responses could change with repeat exposures. As repeat exposures can vary in regularity, identifying regimes with less impact is important for regulation. We use a 16-day split-brood experiment to compare effects of regular and random acoustic noise (playbacks of recordings of ships), relative to ambient-noise controls, on behaviour, growth and development of larval Atlantic cod (Gadus morhua). Short-term noise caused startle responses in newly hatched fish, irrespective of rearing noise. Two days of both regular and random noise regimes reduced growth, while regular noise led to faster yolk sac use. After 16 days, growth in all three sound treatments converged, although fish exposed to regular noise had lower body width-length ratios. Larvae with lower body width-length ratios were easier to catch in a predator-avoidance experiment. Our results demonstrate that the timing of acoustic disturbances can impact survival-related measures during development. Much current work focuses on sound levels, but future studies should consider the role of noise regularity and its importance for noise management and mitigation measures. © 2015 The Authors.

  8. Kratom (Mitragyna speciosa) dependence, withdrawal symptoms and craving in regular users.

    Science.gov (United States)

    Singh, Darshan; Müller, Christian P; Vicknasingam, Balasingam K

    2014-06-01

    Kratom (Mitragyna speciosa) preparations have been traditionally used in Southeast Asia for its medicinal properties. Lately, Kratom use has spread to Europe and the US, where abuse potential and health hazards increasingly emerge. This study is the first to measure systematically Kratom dependence, withdrawal symptoms, and drug craving in regular Kratom users in Malaysia. A cross-sectional survey of 293 regular Kratom users was conducted in the community across three northern peninsular states of Malaysia. The Leeds Dependence Questionnaire, Marijuana Withdrawal Checklist, and Marijuana Craving Questionnaire-Short Form were used to measure Kratom dependence, withdrawal and craving. More than half of the regular users (>6 month of use) developed severe Kratom dependence problems, while 45% showed a moderate Kratom dependence. Physical withdrawal symptoms commonly experienced include muscle spasms and pain, sleeping difficulty, watery eyes/nose, hot flashes, fever, decreased appetite, and diarrhoea. Psychological withdrawal symptoms commonly reported were restlessness, tension, anger, sadness, and nervousness. The average amount of the psychoactive compound, mitragynine, in a single dose of a Kratom drink was 79mg, suggesting an average daily intake of 276.5mg. Regular users who consumed ≥3 glasses Kratom per day, had higher odds of developing severe Kratom dependence, withdrawal symptoms, and inability to control Kratom craving. The findings from this study show that regular Kratom use is associated with drug dependency, development of withdrawal symptoms, and craving. These symptoms become more severe with prolonged use and suggest a stronger control of the drug. Copyright © 2014 Elsevier Ireland Ltd. All rights reserved.

  9. Regularization and a general linear model for event-related potential estimation.

    Science.gov (United States)

    Kristensen, Emmanuelle; Guerin-Dugué, Anne; Rivet, Bertrand

    2017-12-01

    The usual event-related potential (ERP) estimation is the average across epochs time-locked on stimuli of interest. These stimuli are repeated several times to improve the signal-to-noise ratio (SNR) and only one evoked potential is estimated inside the temporal window of interest. Consequently, the average estimation does not take into account other neural responses within the same epoch that are due to short inter stimuli intervals. These adjacent neural responses may overlap and distort the evoked potential of interest. This overlapping process is a significant issue for the eye fixation-related potential (EFRP) technique in which the epochs are time-locked on the ocular fixations. The inter fixation intervals are not experimentally controlled and can be shorter than the neural response's latency. To begin, the Tikhonov regularization, applied to the classical average estimation, was introduced to improve the SNR for a given number of trials. The generalized cross validation was chosen to obtain the optimal value of the ridge parameter. Then, to deal with the issue of overlapping, the general linear model (GLM), was used to extract all neural responses inside an epoch. Finally, the regularization was also applied to it. The models (the classical average and the GLM with and without regularization) were compared on both simulated data and real datasets from a visual scene exploration in co-registration with an eye-tracker, and from a P300 Speller experiment. The regularization was found to improve the estimation by average for a given number of trials. The GLM was more robust and efficient, its efficiency actually reinforced by the regularization.

  10. Laplacian manifold regularization method for fluorescence molecular tomography

    Science.gov (United States)

    He, Xuelei; Wang, Xiaodong; Yi, Huangjian; Chen, Yanrong; Zhang, Xu; Yu, Jingjing; He, Xiaowei

    2017-04-01

    Sparse regularization methods have been widely used in fluorescence molecular tomography (FMT) for stable three-dimensional reconstruction. Generally, ℓ1-regularization-based methods allow for utilizing the sparsity nature of the target distribution. However, in addition to sparsity, the spatial structure information should be exploited as well. A joint ℓ1 and Laplacian manifold regularization model is proposed to improve the reconstruction performance, and two algorithms (with and without Barzilai-Borwein strategy) are presented to solve the regularization model. Numerical studies and in vivo experiment demonstrate that the proposed Gradient projection-resolved Laplacian manifold regularization method for the joint model performed better than the comparative algorithm for ℓ1 minimization method in both spatial aggregation and location accuracy.

  11. Regularized Regression and Density Estimation based on Optimal Transport

    KAUST Repository

    Burger, M.

    2012-03-11

    The aim of this paper is to investigate a novel nonparametric approach for estimating and smoothing density functions as well as probability densities from discrete samples based on a variational regularization method with the Wasserstein metric as a data fidelity. The approach allows a unified treatment of discrete and continuous probability measures and is hence attractive for various tasks. In particular, the variational model for special regularization functionals yields a natural method for estimating densities and for preserving edges in the case of total variation regularization. In order to compute solutions of the variational problems, a regularized optimal transport problem needs to be solved, for which we discuss several formulations and provide a detailed analysis. Moreover, we compute special self-similar solutions for standard regularization functionals and we discuss several computational approaches and results. © 2012 The Author(s).

  12. A regularizing iterative ensemble Kalman method for PDE-constrained inverse problems

    Science.gov (United States)

    Iglesias, Marco A.

    2016-02-01

    We introduce a derivative-free computational framework for approximating solutions to nonlinear PDE-constrained inverse problems. The general aim is to merge ideas from iterative regularization with ensemble Kalman methods from Bayesian inference to develop a derivative-free stable method easy to implement in applications where the PDE (forward) model is only accessible as a black box (e.g. with commercial software). The proposed regularizing ensemble Kalman method can be derived as an approximation of the regularizing Levenberg-Marquardt (LM) scheme (Hanke 1997 Inverse Problems 13 79-95) in which the derivative of the forward operator and its adjoint are replaced with empirical covariances from an ensemble of elements from the admissible space of solutions. The resulting ensemble method consists of an update formula that is applied to each ensemble member and that has a regularization parameter selected in a similar fashion to the one in the LM scheme. Moreover, an early termination of the scheme is proposed according to a discrepancy principle-type of criterion. The proposed method can be also viewed as a regularizing version of standard Kalman approaches which are often unstable unless ad hoc fixes, such as covariance localization, are implemented. The aim of this paper is to provide a detailed numerical investigation of the regularizing and convergence properties of the proposed regularizing ensemble Kalman scheme; the proof of these properties is an open problem. By means of numerical experiments, we investigate the conditions under which the proposed method inherits the regularizing properties of the LM scheme of (Hanke 1997 Inverse Problems 13 79-95) and is thus stable and suitable for its application in problems where the computation of the Fréchet derivative is not computationally feasible. More concretely, we study the effect of ensemble size, number of measurements, selection of initial ensemble and tunable parameters on the performance of the method

  13. Over short selling

    NARCIS (Netherlands)

    Peeters, M.

    2012-01-01

    Short selling heeft een ietwat dubieuze reputatie. ‘Aandelen verkopen die je niet hebt’, dat wekt al de suggestie dat er iets niet in de haak is. Verschillende toezichthouders en regelgevers leggen snel verbanden tussen short selling en marktmisbruik. ‘Short is moord’ was zelfs de kop boven een

  14. Natural short sleeper

    Science.gov (United States)

    Sleep - natural short sleeper ... 7 to 9 hours of sleep each night. Short sleepers sleep less than 75% of what is normal for ... T, Lauderdale DS. Trends in the prevalence of short sleepers in the USA: 1975-2006. Sleep. 2010;33(1):37-45. PMID: 20120619 www. ...

  15. Short-circuit logic

    NARCIS (Netherlands)

    Bergstra, J.A.; Ponse, A.

    2010-01-01

    Short-circuit evaluation denotes the semantics of propositional connectives in which the second argument is only evaluated if the first argument does not suffice to determine the value of the expression. In programming, short-circuit evaluation is widely used. A short-circuit logic is a variant of

  16. Regularizing Feynman path integrals using the generalized Kontsevich-Vishik trace

    Science.gov (United States)

    Hartung, Tobias

    2017-12-01

    A fully regulated definition of Feynman's path integral is presented here. The proposed re-formulation of the path integral coincides with the familiar formulation whenever the path integral is well defined. In particular, it is consistent with respect to lattice formulations and Wick rotations, i.e., it can be used in Euclidean and Minkowski space-time. The path integral regularization is introduced through the generalized Kontsevich-Vishik trace, that is, the extension of the classical trace to Fourier integral operators. Physically, we are replacing the time-evolution semi-group by a holomorphic family of operators such that the corresponding path integrals are well defined in some half space of C . The regularized path integral is, thus, defined through analytic continuation. This regularization can be performed by means of stationary phase approximation or computed analytically depending only on the Hamiltonian and the observable (i.e., known a priori). In either case, the computational effort to evaluate path integrals or expectations of observables reduces to the evaluation of integrals over spheres. Furthermore, computations can be performed directly in the continuum and applications (analytic computations and their implementations) to a number of models including the non-trivial cases of the massive Schwinger model and a φ4 theory.

  17. Performance Comparisons of Improved Regular Repeat Accumulate (RA and Irregular Repeat Accumulate (IRA Turbo Decoding

    Directory of Open Access Journals (Sweden)

    Ahmed Abdulkadhim Hamad

    2017-08-01

    Full Text Available In this paper, different techniques are used to improve the turbo decoding of regular repeat accumulate (RA and irregular repeat accumulate (IRA codes. The adaptive scaling of a-posteriori information produced by Soft-output Viterbi decoder (SOVA is proposed. The encoded pilots are another scheme that applied for short length RA codes. This work also suggests a simple and a fast method to generate a random interleaver having a free 4 cycle Tanner graph. Progressive edge growth algorithm (PEG is also studied and simulated to create the Tanner graphs which have a great girth.

  18. Regular orbital variations in the ultraviolet resonance lines of YZ Cnc

    Energy Technology Data Exchange (ETDEWEB)

    Drew, J.E.; Verbunt, F.

    1988-09-15

    Observations with the International Ultraviolet Explorer of the dwarf nova YZ Cnc show regular orbital variations in the line profiles of the ultraviolet resonance lines. The P Cygni profile of the C IV lambda 1549 line changes drastically from absorption-dominated to emission-dominated, during the three observed orbits in each of two observation shifts, separated by one day, shortly after an outburst maximum. Similar changes are visible in the N V lambda 1240 and Si IV lambda 1400 lines. It is argued that these observations indicate a strong deviation in the wind geometry from a spherical outflow pattern, and imply an asymmetry with respect to the disc rotation axis.

  19. Movement and Space

    DEFF Research Database (Denmark)

    Riisgaard Hansen, Thomas; Eriksson, Eva; Lykke-Olesen, Andreas

    2005-01-01

    In this paper we explore the space in which movement based interaction takes place. We have in several projects explored how fixed and mobile cameras can be used in movement based interaction and will shortly describe these projects. Based on our experience with working with movement...

  20. Approximation of N(kappa)(infinity)-functions I : Models and Regularization

    NARCIS (Netherlands)

    Dijksma, Aad; Luger, Annemarie; Shondin, Yuri; Behrndt, J; Forster, KH; Langer, H; Trunk, C

    2009-01-01

    The class N(kappa)(infinity) consists of all generalized Nevanlinna functions N with kappa, negative squares for which the root space at, infinity of the self-adjoint relation in the minimal model (short for self-adjoint operator realization) of N contains a kappa-dimensional non-positive subspace.

  1. Nothing a very short introduction

    CERN Document Server

    Close, Frank

    2009-01-01

    What is 'nothing'? What remains when you take all the matter away? Can empty space - a void - exist? This Very Short Introduction explores the science and the history of the elusive void: from Aristotle who insisted that the vacuum was impossible, via the theories of Newton and Einstein, to our very latest discoveries and why they can tell us extraordinary things about the cosmos. Frank Close tells the story of how scientists have explored the elusive void, and the rich discoveries that they have made there. He takes the reader on a lively and accessible history through ancient ideas and cultural superstitions to the frontiers of current research

  2. Regular and Chaotic Spatial Distribution of Bose-Einstein Condensed Atoms in a Ratchet Potential

    Science.gov (United States)

    Li, Fei; Xu, Lan; Li, Wenwu

    2018-02-01

    We study the regular and chaotic spatial distribution of Bose-Einstein condensed atoms with a space-dependent nonlinear interaction in a ratchet potential. There exists in the system a space-dependent atomic current that can be tuned via Feshbach resonance technique. In the presence of the space-dependent atomic current and a weak ratchet potential, the Smale-horseshoe chaos is studied and the Melnikov chaotic criterion is obtained. Numerical simulations show that the ratio between the intensities of optical potentials forming the ratchet potential, the wave vector of the laser producing the ratchet potential or the wave vector of the modulating laser can be chosen as the controlling parameters to result in or avoid chaotic spatial distributional states.

  3. Existence, regularity and representation of solutions of time fractional wave equations

    Directory of Open Access Journals (Sweden)

    Valentin Keyantuo

    2017-09-01

    Full Text Available We study the solvability of the fractional order inhomogeneous Cauchy problem $$ \\mathbb{D}_t^\\alpha u(t=Au(t+f(t, \\quad t>0,\\;1<\\alpha\\le 2, $$ where A is a closed linear operator in some Banach space X and $f:[0,\\infty\\to X$ a given function. Operator families associated with this problem are defined and their regularity properties are investigated. In the case where A is a generator of a $\\beta$-times integrated cosine family $(C_\\beta(t$, we derive explicit representations of mild and classical solutions of the above problem in terms of the integrated cosine family. We include applications to elliptic operators with Dirichlet, Neumann or Robin type boundary conditions on $L^p$-spaces and on the space of continuous functions.

  4. Generalisation for regular black holes on general relativity to f(R) gravity

    Energy Technology Data Exchange (ETDEWEB)

    Rodrigues, Manuel E. [Universidade Federal do Para Campus Universitario de Abaetetuba, Faculdade de Ciencias Exatas e Tecnologia, Abaetetuba, Para (Brazil); Universidade Federal do Para, Faculdade de Fisica, PPGF, Belem, Para (Brazil); Fabris, Julio C. [Universidade Federal do Espirito Santo, Vitoria, ES (Brazil); National Research Nuclear University MEPhI, Moscow (Russian Federation); Junior, Ednaldo L.B. [Universidade Federal do Para, Faculdade de Fisica, PPGF, Belem, Para (Brazil); Universidade Federal do Para, Campus Universitario de Tucurui, Faculdade de Engenharia da Computacao, Tucurui, Para (Brazil); Marques, Glauber T. [Universidade Federal Rural da Amazonia ICIBE - LASIC, Belem, PA (Brazil)

    2016-05-15

    IIn this paper, we determine regular black hole solutions using a very general f(R) theory, coupled to a nonlinear electromagnetic field given by a Lagrangian L{sub NED}. The functions f(R) and L{sub NED} are in principle left unspecified. Instead, the model is constructed through a choice of the mass function M(r) presented in the metric coefficients. Solutions which have a regular behaviour of the geometric invariants are found. These solutions have two horizons, the event horizon and the Cauchy horizon. All energy conditions are satisfied in the whole space-time, except the strong energy condition (SEC), which is violated near the Cauchy horizon.We present also a new theorem related to the energy conditions in f(R) gravity, re-obtaining the well-known conditions in the context of general relativity when the geometry of the solution is the same. (orig.)

  5. Learning regularization parameters for general-form Tikhonov

    Science.gov (United States)

    Chung, Julianne; Español, Malena I.

    2017-07-01

    Computing regularization parameters for general-form Tikhonov regularization can be an expensive and difficult task, especially if multiple parameters or many solutions need to be computed in real time. In this work, we assume training data is available and describe an efficient learning approach for computing regularization parameters that can be used for a large set of problems. We consider an empirical Bayes risk minimization framework for finding regularization parameters that minimize average errors for the training data. We first extend methods from Chung et al (2011 SIAM J. Sci. Comput. 33 3132-52) to the general-form Tikhonov problem. Then we develop a learning approach for multi-parameter Tikhonov problems, for the case where all involved matrices are simultaneously diagonalizable. For problems where this is not the case, we describe an approach to compute near-optimal regularization parameters by using operator approximations for the original problem. Finally, we propose a new class of regularizing filters, where solutions correspond to multi-parameter Tikhonov solutions, that requires less data than previously proposed optimal error filters, avoids the generalized SVD, and allows flexibility and novelty in the choice of regularization matrices. Numerical results for 1D and 2D examples using different norms on the errors show the effectiveness of our methods.

  6. Two hybrid regularization frameworks for solving the electrocardiography inverse problem

    Energy Technology Data Exchange (ETDEWEB)

    Jiang Mingfeng; Xia Ling; Shou Guofa; Liu Feng [Department of Biomedical Engineering, Zhejiang University, Hangzhou 310027 (China); Crozier, Stuart [School of Information Technology and Electrical Engineering, University of Queensland, St. Lucia, Brisbane, Queensland 4072 (Australia)], E-mail: xialing@zju.edu.cn

    2008-09-21

    In this paper, two hybrid regularization frameworks, LSQR-Tik and Tik-LSQR, which integrate the properties of the direct regularization method (Tikhonov) and the iterative regularization method (LSQR), have been proposed and investigated for solving ECG inverse problems. The LSQR-Tik method is based on the Lanczos process, which yields a sequence of small bidiagonal systems to approximate the original ill-posed problem and then the Tikhonov regularization method is applied to stabilize the projected problem. The Tik-LSQR method is formulated as an iterative LSQR inverse, augmented with a Tikhonov-like prior information term. The performances of these two hybrid methods are evaluated using a realistic heart-torso model simulation protocol, in which the heart surface source method is employed to calculate the simulated epicardial potentials (EPs) from the action potentials (APs), and then the acquired EPs are used to calculate simulated body surface potentials (BSPs). The results show that the regularized solutions obtained by the LSQR-Tik method are approximate to those of the Tikhonov method, the computational cost of the LSQR-Tik method, however, is much less than that of the Tikhonov method. Moreover, the Tik-LSQR scheme can reconstruct the epcicardial potential distribution more accurately, specifically for the BSPs with large noisy cases. This investigation suggests that hybrid regularization methods may be more effective than separate regularization approaches for ECG inverse problems.

  7. Two hybrid regularization frameworks for solving the electrocardiography inverse problem

    Science.gov (United States)

    Jiang, Mingfeng; Xia, Ling; Shou, Guofa; Liu, Feng; Crozier, Stuart

    2008-09-01

    In this paper, two hybrid regularization frameworks, LSQR-Tik and Tik-LSQR, which integrate the properties of the direct regularization method (Tikhonov) and the iterative regularization method (LSQR), have been proposed and investigated for solving ECG inverse problems. The LSQR-Tik method is based on the Lanczos process, which yields a sequence of small bidiagonal systems to approximate the original ill-posed problem and then the Tikhonov regularization method is applied to stabilize the projected problem. The Tik-LSQR method is formulated as an iterative LSQR inverse, augmented with a Tikhonov-like prior information term. The performances of these two hybrid methods are evaluated using a realistic heart-torso model simulation protocol, in which the heart surface source method is employed to calculate the simulated epicardial potentials (EPs) from the action potentials (APs), and then the acquired EPs are used to calculate simulated body surface potentials (BSPs). The results show that the regularized solutions obtained by the LSQR-Tik method are approximate to those of the Tikhonov method, the computational cost of the LSQR-Tik method, however, is much less than that of the Tikhonov method. Moreover, the Tik-LSQR scheme can reconstruct the epcicardial potential distribution more accurately, specifically for the BSPs with large noisy cases. This investigation suggests that hybrid regularization methods may be more effective than separate regularization approaches for ECG inverse problems.

  8. Three regularities of recognition memory: the role of bias.

    Science.gov (United States)

    Hilford, Andrew; Maloney, Laurence T; Glanzer, Murray; Kim, Kisok

    2015-12-01

    A basic assumption of Signal Detection Theory is that decisions are made on the basis of likelihood ratios. In a preceding paper, Glanzer, Hilford, and Maloney (Psychonomic Bulletin & Review, 16, 431-455, 2009) showed that the likelihood ratio assumption implies that three regularities will occur in recognition memory: (1) the Mirror Effect, (2) the Variance Effect, (3) the normalized Receiver Operating Characteristic (z-ROC) Length Effect. The paper offered formal proofs and computational demonstrations that decisions based on likelihood ratios produce the three regularities. A survey of data based on group ROCs from 36 studies validated the likelihood ratio assumption by showing that its three implied regularities are ubiquitous. The study noted, however, that bias, another basic factor in Signal Detection Theory, can obscure the Mirror Effect. In this paper we examine how bias affects the regularities at the theoretical level. The theoretical analysis shows: (1) how bias obscures the Mirror Effect, not the other two regularities, and (2) four ways to counter that obscuring. We then report the results of five experiments that support the theoretical analysis. The analyses and the experimental results also demonstrate: (1) that the three regularities govern individual, as well as group, performance, (2) alternative explanations of the regularities are ruled out, and (3) that Signal Detection Theory, correctly applied, gives a simple and unified explanation of recognition memory data.

  9. Metabolic effects of regular physical exercise in healthy population.

    Science.gov (United States)

    Caro, Juan; Navarro, Inmaculada; Romero, Pedro; Lorente, Rosario I; Priego, María Antonia; Martínez-Hervás, Sergio; Real, Jose T; Ascaso, Juan F

    2013-04-01

    To assess the effect of moderate regular aerobic physical activity not associated to body weight changes on insulin resistance and the associated metabolic changes in general population. A cross-sectional, observational study in an adult population (n=101 subjects aged 30-70 years) with no personal history of disease and with stable weight in the three months prior to the study. The group with regular exercise performed 30-60 minutes of moderate regular physical exercise 5 days per week (7.5-15 hours MET per week), while a control group performed no regular physical exercise and had a sedentary lifestyle. Subjects were age- and sex-matched. Lipids, lipoproteins, and HOMA index were measured using standard methods. The group with regular physical activity consisted of 48 subjects (21 male/27 female), while the group with no regular physical activity included 53 subjects (31 male/22 female). No significant differences were found between the groups in age, sex, BMI, waist circumference, and blood pressure. Significant differences were found between the groups in fasting serum triglyceride, HDL-C, and apoB levels. Fasting plasma insulin levels (12.1 ± 4.13 vs 14.9 ± 4.8 mU/L, P= .004) and HOMA index (2.8 ± 1.1 vs 3.5 ± 4.1, P= .001) were significantly lower in the group with regular physical activity as compared to the sedentary group. Prevalence rates of metabolic syndrome were 20.7% and 45.8% (P=.01) in the regular physical activity and sedentary groups respectively. Moderate regular physical activity is associated to higher insulin sensitivity, an improved lipid profile, and a decrease in components of metabolic syndrome with no change in weight or BMI. Copyright © 2012 SEEN. Published by Elsevier Espana. All rights reserved.

  10. Space: A new frontier

    Science.gov (United States)

    Cutolo, Mona; Miranda, Denis M.

    1986-08-01

    The challenges and the promises of space colonization present an exciting opportunity for exploring and analyzing the values, the institutions and the physical environments we have created on Earth. Here we describe an interdisciplinary course, team-taught, that examines the current state of space exploration and the innovative technologies spawned by space research. The course also explores the possible social, economic, political and international impacts of migration to space of people and industries. A course project is to design a space colony for a community of 10,000 people. Given the technical design parameters and other details, the students are to engineer socially an ideal community, bearing in mind the short lifetimes of utopian communities of the past. The process is intended to help the students gain a fair understanding of the dynamics of human societies and of the technologies we have developed that enable us to change our world and to design new worlds.

  11. Implicit Regularization for Reconstructing 3D Building Rooftop Models Using Airborne LiDAR Data

    Science.gov (United States)

    Jung, Jaewook; Jwa, Yoonseok; Sohn, Gunho

    2017-01-01

    With rapid urbanization, highly accurate and semantically rich virtualization of building assets in 3D become more critical for supporting various applications, including urban planning, emergency response and location-based services. Many research efforts have been conducted to automatically reconstruct building models at city-scale from remotely sensed data. However, developing a fully-automated photogrammetric computer vision system enabling the massive generation of highly accurate building models still remains a challenging task. One the most challenging task for 3D building model reconstruction is to regularize the noises introduced in the boundary of building object retrieved from a raw data with lack of knowledge on its true shape. This paper proposes a data-driven modeling approach to reconstruct 3D rooftop models at city-scale from airborne laser scanning (ALS) data. The focus of the proposed method is to implicitly derive the shape regularity of 3D building rooftops from given noisy information of building boundary in a progressive manner. This study covers a full chain of 3D building modeling from low level processing to realistic 3D building rooftop modeling. In the element clustering step, building-labeled point clouds are clustered into homogeneous groups by applying height similarity and plane similarity. Based on segmented clusters, linear modeling cues including outer boundaries, intersection lines, and step lines are extracted. Topology elements among the modeling cues are recovered by the Binary Space Partitioning (BSP) technique. The regularity of the building rooftop model is achieved by an implicit regularization process in the framework of Minimum Description Length (MDL) combined with Hypothesize and Test (HAT). The parameters governing the MDL optimization are automatically estimated based on Min-Max optimization and Entropy-based weighting method. The performance of the proposed method is tested over the International Society for

  12. Implicit Regularization for Reconstructing 3D Building Rooftop Models Using Airborne LiDAR Data.

    Science.gov (United States)

    Jung, Jaewook; Jwa, Yoonseok; Sohn, Gunho

    2017-03-19

    With rapid urbanization, highly accurate and semantically rich virtualization of building assets in 3D become more critical for supporting various applications, including urban planning, emergency response and location-based services. Many research efforts have been conducted to automatically reconstruct building models at city-scale from remotely sensed data. However, developing a fully-automated photogrammetric computer vision system enabling the massive generation of highly accurate building models still remains a challenging task. One the most challenging task for 3D building model reconstruction is to regularize the noises introduced in the boundary of building object retrieved from a raw data with lack of knowledge on its true shape. This paper proposes a data-driven modeling approach to reconstruct 3D rooftop models at city-scale from airborne laser scanning (ALS) data. The focus of the proposed method is to implicitly derive the shape regularity of 3D building rooftops from given noisy information of building boundary in a progressive manner. This study covers a full chain of 3D building modeling from low level processing to realistic 3D building rooftop modeling. In the element clustering step, building-labeled point clouds are clustered into homogeneous groups by applying height similarity and plane similarity. Based on segmented clusters, linear modeling cues including outer boundaries, intersection lines, and step lines are extracted. Topology elements among the modeling cues are recovered by the Binary Space Partitioning (BSP) technique. The regularity of the building rooftop model is achieved by an implicit regularization process in the framework of Minimum Description Length (MDL) combined with Hypothesize and Test (HAT). The parameters governing the MDL optimization are automatically estimated based on Min-Max optimization and Entropy-based weighting method. The performance of the proposed method is tested over the International Society for

  13. Implicit Regularization for Reconstructing 3D Building Rooftop Models Using Airborne LiDAR Data

    Directory of Open Access Journals (Sweden)

    Jaewook Jung

    2017-03-01

    Full Text Available With rapid urbanization, highly accurate and semantically rich virtualization of building assets in 3D become more critical for supporting various applications, including urban planning, emergency response and location-based services. Many research efforts have been conducted to automatically reconstruct building models at city-scale from remotely sensed data. However, developing a fully-automated photogrammetric computer vision system enabling the massive generation of highly accurate building models still remains a challenging task. One the most challenging task for 3D building model reconstruction is to regularize the noises introduced in the boundary of building object retrieved from a raw data with lack of knowledge on its true shape. This paper proposes a data-driven modeling approach to reconstruct 3D rooftop models at city-scale from airborne laser scanning (ALS data. The focus of the proposed method is to implicitly derive the shape regularity of 3D building rooftops from given noisy information of building boundary in a progressive manner. This study covers a full chain of 3D building modeling from low level processing to realistic 3D building rooftop modeling. In the element clustering step, building-labeled point clouds are clustered into homogeneous groups by applying height similarity and plane similarity. Based on segmented clusters, linear modeling cues including outer boundaries, intersection lines, and step lines are extracted. Topology elements among the modeling cues are recovered by the Binary Space Partitioning (BSP technique. The regularity of the building rooftop model is achieved by an implicit regularization process in the framework of Minimum Description Length (MDL combined with Hypothesize and Test (HAT. The parameters governing the MDL optimization are automatically estimated based on Min-Max optimization and Entropy-based weighting method. The performance of the proposed method is tested over the International

  14. Regularization theory for ill-posed problems selected topics

    CERN Document Server

    Lu, Shuai

    2013-01-01

    Thismonograph is a valuable contribution to thehighly topical and extremly productive field ofregularisationmethods for inverse and ill-posed problems. The author is an internationally outstanding and acceptedmathematicianin this field. In his book he offers a well-balanced mixtureof basic and innovative aspects.He demonstrates new,differentiatedviewpoints, and important examples for applications. The bookdemontrates thecurrent developments inthe field of regularization theory,such as multiparameter regularization and regularization in learning theory. The book is written for graduate and PhDs

  15. A regularized GMRES method for inverse blackbody radiation problem

    Directory of Open Access Journals (Sweden)

    Wu Jieer

    2013-01-01

    Full Text Available The inverse blackbody radiation problem is focused on determining temperature distribution of a blackbody from measured total radiated power spectrum. This problem consists of solving a first kind of Fredholm integral equation and many numerical methods have been proposed. In this paper, a regularized GMRES method is presented to solve the linear ill-posed problem caused by the discretization of such an integral equation. This method projects the orignal problem onto a lower dimensional subspaces by the Arnoldi process. Tikhonov regularization combined with GCV criterion is applied to stabilize the numerical iteration process. Three numerical examples indicate the effectiveness of the regularized GMRES method.

  16. Closedness type regularity conditions in convex optimization and beyond

    Directory of Open Access Journals (Sweden)

    Sorin-Mihai Grad

    2016-09-01

    Full Text Available The closedness type regularity conditions have proven during the last decade to be viable alternatives to their more restrictive interiority type counterparts, in both convex optimization and different areas where it was successfully applied. In this review article we de- and reconstruct some closedness type regularity conditions formulated by means of epigraphs and subdifferentials, respectively, for general optimization problems in order to stress that they arise naturally when dealing with such problems. The results are then specialized for constrained and unconstrained convex optimization problems. We also hint towards other classes of optimization problems where closedness type regularity conditions were successfully employed and discuss other possible applications of them.

  17. Bias-Variance Tradeoff of Graph Laplacian Regularizer

    Science.gov (United States)

    Chen, Pin-Yu; Liu, Sijia

    2017-08-01

    This paper presents a bias-variance tradeoff of graph Laplacian regularizer, which is widely used in graph signal processing and semi-supervised learning tasks. The scaling law of the optimal regularization parameter is specified in terms of the spectral graph properties and a novel signal-to-noise ratio parameter, which suggests selecting a mediocre regularization parameter is often suboptimal. The analysis is applied to three applications, including random, band-limited, and multiple-sampled graph signals. Experiments on synthetic and real-world graphs demonstrate near-optimal performance of the established analysis.

  18. Factors distinguishing regular readers of breast cancer information in magazines.

    Science.gov (United States)

    Johnson, J D

    1997-01-01

    This study examined the differences between women who were regular and occasional readers of breast cancer information in magazines. Based on uses and gratifications theory and the Health Belief Model, women respondents (n = 366) were predicted to differentially expose themselves to information. A discriminant analysis showed that women who were regular readers reported greater fear, perceived vulnerability, general health concern, personal experience, and surveillance need for breast cancer-related information. The results are discussed in terms of the potential positive and negative consequences of regular exposure to breast cancer information in magazines.

  19. Directional Total Generalized Variation Regularization for Impulse Noise Removal

    DEFF Research Database (Denmark)

    Kongskov, Rasmus Dalgas; Dong, Yiqiu

    2017-01-01

    A recently suggested regularization method, which combines directional information with total generalized variation (TGV), has been shown to be successful for restoring Gaussian noise corrupted images. We extend the use of this regularizer to impulse noise removal and demonstrate that using...... this regularizer for directional images is highly advantageous. In order to estimate directions in impulse noise corrupted images, which is much more challenging compared to Gaussian noise corrupted images, we introduce a new Fourier transform-based method. Numerical experiments show that this method is more...

  20. Caracterizaciones combinatorias y algebraicas de grafos distancia-regulares

    OpenAIRE

    Fiol Mora, Miquel Àngel

    2013-01-01

    Los grafos distancia-regulares aparecen a menudo en el estudio de es- tructuras matemáticas con un alto grado de simetría y/o regularidad. Un ejemplo bien conocido de tales grafos son los esqueletos de los sólidos platónicos. Desde que fueron propuestos por Norman Biggs, los grafos distancia-regulares han sido caracterizados por numerosos resultados, tanto de carácter combinatorio como algebraico. Como ejemplo del primer caso, sabemos que un grafo es distancia-regular ...