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Sample records for sheath blight pathogen

  1. Utilizing Bacillus to inhibit the growth and infection by sheath blight pathogen, Rhizoctoniasolani in rice

    Margani, R.; Hadiwiyono; Widadi, S.

    2018-03-01

    Rhizoctonia solani Kuhn is a common pathogen of rice. The pathogen causes sheath blight of rice. The pathogen can cause loss in the production of rice up to 45%. So far, the disease however is still poorly taken care of by the farmers and researchers, so the control measures is nearly never practiced by the farmers in the fields. It due to the unavailability of effective control method of the disease. Therefore, development to control the disease is important. Bacillus is one of popular bacteria which is effective as biological control agent of a lot of pathogens in plants, but it has not been used for control sheath blight in rice yet. The current researches were aimed to study the potential of Bacillus collected from healthy rice as candidates of biological control agent of the disease. The results showed that some isolates showed indications to inhibit significantly the growth and infection of the pathogen. We obtained at least five isolates of Bacillus collected from leaves, sheath, and stem of healthy rice fields. All of the isolates could effectively inhibit the growth of R. solani in vitro on potato dextrose medium at range 30.33-58.00%, whereas in vivo B05 isolate was the most effective in inhibiting the infection of pathogen at 30.43%. It was not significantly different (P≥0.05) to application of hexaconazol with dosage of 2 ml L-1.

  2. Novel Chitinase Gene LOC_Os11g47510 from Indica Rice Tetep Provides Enhanced Resistance against Sheath Blight Pathogen Rhizoctonia solani in Rice

    Tilak R. Sharma

    2017-04-01

    Full Text Available Sheath blight disease (ShB, caused by the fungus Rhizoctonia solani Kühn, is one of the most destructive diseases of rice (Oryza sativa L., causing substantial yield loss in rice. In the present study, a novel rice chitinase gene, LOC_Os11g47510 was cloned from QTL region of R. solani tolerant rice line Tetep and used for functional validation by genetic transformation of ShB susceptible japonica rice line Taipei 309 (TP309. The transformants were characterized using molecular and functional approaches. Molecular analysis by PCR using a set of primers specific to CaMv 35S promoter, chitinase and HptII genes confirmed the presence of transgene in transgenic plants which was further validated by Southern hybridization. Further, qRT-PCR analysis of transgenic plants showed good correlation between transgene expression and the level of sheath blight resistance among transformants. Functional complementation assays confirmed the effectiveness of the chitinase mediated resistance in all the transgenic TP309 plants with varying levels of enhanced resistance against R. solani. Therefore, the novel chitinase gene cloned and characterized in the present study from the QTL region of rice will be of significant use in molecular plant breeding program for developing sheath blight resistance in rice.

  3. Efficacy of Newer Molecules, Bioagents and Botanicals against Maydis Leaf Blight and Banded Leaf and Sheath Blight of Maize

    Malik, Vinod Kumar; Singh, Manjeet; Hooda, Karambir Singh; Yadav, Naresh Kumar; Chauhan, Prashant Kumar

    2018-01-01

    Maize (Zea mays L.; 2N=20) is major staple food crop grown worldwide adapted to several biotic and abiotic stresses. Maydis leaf blight (MLB) and banded leaf and sheath blight (BLSB) are serious foliar fungal diseases may cause up to 40% and 100% grain yield loss, respectively. The present studies were undertaken to work out the efficacy of chemicals, botanicals and bioagents for the management of MLB and BLSB under field condition for two seasons Kharif 2014 and 2015. Five molecules (propiconazole 25 EC, hexaconazole 25 EC, carbendazim 50 WP, mancozeb 75 WP and carbedazim 12 WP + mancozeb 63 WP), two bioagents i.e. Trichoderma harzianum and T. viridae and three botanicals namely azadirachtin, sarpagandha and bel pathar were tested for their efficacy against MLB. Eight newer fungicides viz., difenconazole 250 SC, hexaconazole 5 EC, carbendazim 50WP, validamycin 3 L, tebuconazole 250 EC, trifloxystrobin 50 WG + tebuconazole 50 WG, azoxystrobin 250 EC and pencycuron 250 SC were evaluated against BLSB. Analysis revealed significant effects of propiconazole at 0.1%, carbendazim 12 WP + mancozeb 63 WP at 0.125% and sarpagandha leaves at 10% against MLB pathogen, whereas validamycin at 0.1% and trifloxystrobin 25 WG + tebuconazole 50 WG at 0.05% were found effective against BLSB. The slow rate of disease control virtually by the bioagents might have not shown instant effect on plant response to the yield enhancing components. The identified sources of management can be used further in strengthening the plant protection in maize against MLB and BLSB. PMID:29628818

  4. Efficacy of Newer Molecules, Bioagents and Botanicals against Maydis Leaf Blight and Banded Leaf and Sheath Blight of Maize.

    Malik, Vinod Kumar; Singh, Manjeet; Hooda, Karambir Singh; Yadav, Naresh Kumar; Chauhan, Prashant Kumar

    2018-04-01

    Maize ( Zea mays L.; 2N=20) is major staple food crop grown worldwide adapted to several biotic and abiotic stresses. Maydis leaf blight (MLB) and banded leaf and sheath blight (BLSB) are serious foliar fungal diseases may cause up to 40% and 100% grain yield loss, respectively. The present studies were undertaken to work out the efficacy of chemicals, botanicals and bioagents for the management of MLB and BLSB under field condition for two seasons Kharif 2014 and 2015. Five molecules (propiconazole 25 EC, hexaconazole 25 EC, carbendazim 50 WP, mancozeb 75 WP and carbedazim 12 WP + mancozeb 63 WP), two bioagents i.e. Trichoderma harzianum and T. viridae and three botanicals namely azadirachtin, sarpagandha and bel pathar were tested for their efficacy against MLB. Eight newer fungicides viz., difenconazole 250 SC, hexaconazole 5 EC, carbendazim 50WP, validamycin 3 L, tebuconazole 250 EC, trifloxystrobin 50 WG + tebuconazole 50 WG, azoxystrobin 250 EC and pencycuron 250 SC were evaluated against BLSB. Analysis revealed significant effects of propiconazole at 0.1%, carbendazim 12 WP + mancozeb 63 WP at 0.125% and sarpagandha leaves at 10% against MLB pathogen, whereas validamycin at 0.1% and trifloxystrobin 25 WG + tebuconazole 50 WG at 0.05% were found effective against BLSB. The slow rate of disease control virtually by the bioagents might have not shown instant effect on plant response to the yield enhancing components. The identified sources of management can be used further in strengthening the plant protection in maize against MLB and BLSB.

  5. Efficacy of Newer Molecules, Bioagents and Botanicals against Maydis Leaf Blight and Banded Leaf and Sheath Blight of Maize

    2018-04-01

    Full Text Available Maize (Zea mays L.; 2N=20 is major staple food crop grown worldwide adapted to several biotic and abiotic stresses. Maydis leaf blight (MLB and banded leaf and sheath blight (BLSB are serious foliar fungal diseases may cause up to 40% and 100% grain yield loss, respectively. The present studies were undertaken to work out the efficacy of chemicals, botanicals and bioagents for the management of MLB and BLSB under field condition for two seasons Kharif 2014 and 2015. Five molecules (propiconazole 25 EC, hexaconazole 25 EC, carbendazim 50 WP, mancozeb 75 WP and carbedazim 12 WP + mancozeb 63 WP, two bioagents i.e. Trichoderma harzianum and T. viridae and three botanicals namely azadirachtin, sarpagandha and bel pathar were tested for their efficacy against MLB. Eight newer fungicides viz., difenconazole 250 SC, hexaconazole 5 EC, carbendazim 50WP, validamycin 3 L, tebuconazole 250 EC, trifloxystrobin 50 WG + tebuconazole 50 WG, azoxystrobin 250 EC and pencycuron 250 SC were evaluated against BLSB. Analysis revealed significant effects of propiconazole at 0.1%, carbendazim 12 WP + mancozeb 63 WP at 0.125% and sarpagandha leaves at 10% against MLB pathogen, whereas validamycin at 0.1% and trifloxystrobin 25 WG + tebuconazole 50 WG at 0.05% were found effective against BLSB. The slow rate of disease control virtually by the bioagents might have not shown instant effect on plant response to the yield enhancing components. The identified sources of management can be used further in strengthening the plant protection in maize against MLB and BLSB.

  6. Association between QTLs and morphological traits toward sheath blight resistance in rice (Oryza sativa L.)

    Hossain, Md Kamal; Jena, Kshirod Kumar; Bhuiyan, Md Atiqur Rahman; Wickneswari, Ratnam

    2016-01-01

    Sheath blight is considered the most significant disease of rice and causes enormous yield losses over the world. Breeding for resistant varieties is the only viable option to combat the disease efficiently. Seventeen diverged rice genotypes along with 17 QTL-linked SSR markers were evaluated under greenhouse conditions. Pearson’s correlation showed only the flag leaf angle had a significant correlation with sheath blight resistance under greenhouse screening. Multivariate analysis based on UPGMA clustering and principal component analysis (PCA) indicated that the flag leaf angle, flag leaf length, and plant compactness were significantly associated with the following SSR marker alleles: RM209 (116,130), RM202 (176), RM224 (126), RM257 (156), RM426 (175), and RM6971 (196), which are linked to the SB QTLs: QRlh11, qSBR11-3, qSBR11-1, qSBR9-1, qShB3-2, and qSB-9. A Mantel test suggested a weak relationship between the observed phenotypes and allelic variation patterns, implying the independent nature of morphological and molecular variations. Teqing and Tetep were found to be the most resistant cultivars. IR65482-4-136-2-2, MR219-4, and MR264 showed improved resistance potentials. These results suggest that the morphological traits and QTLs which have been found to associate with sheath blight resistance are a good choice to enhance resistance through pyramiding either 2 QTLs or QTLs and traits in susceptible rice cultivars. PMID:27795687

  7. Thiamine primed defense provides reliable alternative to systemic fungicide carbendazim against sheath blight disease in rice (Oryza sativa L.).

    Bahuguna, Rajeev Nayan; Joshi, Rohit; Shukla, Alok; Pandey, Mayank; Kumar, J

    2012-08-01

    A novel pathogen defense strategy by thiamine priming was evaluated for its efficacy against sheath blight pathogen, Rhizoctonia solani AG-1A, of rice and compared with that of systemic fungicide, carbendazim (BCM). Seeds of semidwarf, high yielding, basmati rice variety Vasumati were treated with thiamine (50 mM) and BCM (4 mM). The pot cultured plants were challenge inoculated with R. solani after 40 days of sowing and effect of thiamine and BCM on rice growth and yield traits was examined. Higher hydrogen peroxide content, total phenolics accumulation, phenylalanine ammonia lyase (PAL) activity and superoxide dismutase (SOD) activity under thiamine treatment displayed elevated level of systemic resistance, which was further augmented under challenging pathogen infection. High transcript level of phenylalanine ammonia lyase (PAL) and manganese superoxide dismutase (MnSOD) validated mode of thiamine primed defense. Though minimum disease severity was observed under BCM treatment, thiamine produced comparable results, with 18.12 per cent lower efficacy. Along with fortifying defense components and minor influence on photosynthetic pigments and nitrate reductase (NR) activity, thiamine treatment significantly reduced pathogen-induced loss in photosynthesis, stomatal conductance, chlorophyll fluorescence, NR activity and NR transcript level. Physiological traits affected under pathogen infection were found signatory for characterizing plant's response under disease and were detectable at early stage of infection. These findings provide a novel paradigm for developing alternative, environmentally safe strategies to control plant diseases. Copyright © 2012 Elsevier Masson SAS. All rights reserved.

  8. Inhibitory activity of plant extracts on the early blight pathogen ...

    This study evaluated the effect of two plant extracts, Ricinus communis and Chromolaena odorata on the control of the early blight pathogen, Alternaria solani (Ell. and Mart.). The study was conducted in the Laboratory of the Crop Production and Horticulture Department, Federal University of Technology, Yola, Adamawa ...

  9. Green tissue-specific co-expression of chitinase and oxalate oxidase 4 genes in rice for enhanced resistance against sheath blight.

    Karmakar, Subhasis; Molla, Kutubuddin Ali; Chanda, Palas K; Sarkar, Sailendra Nath; Datta, Swapan K; Datta, Karabi

    2016-01-01

    Green tissue-specific simultaneous overexpression of two defense-related genes ( OsCHI11 & OsOXO4 ) in rice leads to significant resistance against sheath blight pathogen ( R. solani ) without distressing any agronomically important traits. Overexpressing two defense-related genes (OsOXO4 and OsCHI11) cloned from rice is effective at enhancing resistance against sheath blight caused by Rhizoctonia solani. These genes were expressed under the control of two different green tissue-specific promoters, viz. maize phosphoenolpyruvate carboxylase gene promoter, PEPC, and rice cis-acting 544-bp DNA element, immediately upstream of the D54O translational start site, P D54O-544 . Putative T0 transgenic rice plants were screened by PCR and integration of genes was confirmed by Southern hybridization of progeny (T1) rice plants. Successful expression of OsOXO4 and OsCHI11 in all tested plants was confirmed. Expression of PR genes increased significantly following pathogen infection in overexpressing transgenic plants. Following infection, transgenic plants exhibited elevated hydrogen peroxide levels, significant changes in activity of ROS scavenging enzymes and reduced membrane damage when compared to their wild-type counterpart. In a Rhizoctonia solani toxin assay, a detached leaf inoculation test and an in vivo plant bioassay, transgenic plants showed a significant reduction in disease symptoms in comparison to non-transgenic control plants. This is the first report of overexpression of two different PR genes driven by two green tissue-specific promoters providing enhanced sheath blight resistance in transgenic rice.

  10. Evaluating Sheath Blight Resistance in Rice Using Detached Tiller and Field Screening Method

    Bedanand Chaudhary

    2015-12-01

    Full Text Available In present study physical resistance test on 12 rice varieties against sheath blight (ShB caused by Rhizoctonia solani was examined. A detached tiller test was used to measure components of ShB physiological resistance at Regional Agricultural Research Station (RARS, Tarahara, Nepal. The varieties were evaluated in a randomized complete block design (RCBD with 3 replications in year 2010-12. A sclerotium was inserted below the leaf collar of individual tillers maintained in tubes filled with water. Only the 56-day old susceptible plants were inoculated. After 7 days of inoculation, number of lesions, dead leaves, vertical sheath colonization and disease severity were measured. In 2011, field experiments were conducted with three replications to address morphological resistance in 28 rice genotypes. Disease incidence was recorded on 14, 21 and 28 days after inoculation. The number of dead leaves differed only numerically while disease variables significantly (P=0.004 varied among varieties. The other variables were highly correlated with each other. Cluster analysis of variables formed three varietal groups; Sabitri with lowest, and Jasmine-85 and Betichikon having highest values. Rice genotypes differed significantly (P=0.05 for disease incidence and area Under Disease Progress Curve (AUDPC. Tetep and IAC-165 had the lowest and highest terminal disease incidences and AUDPC, respectively. Sabitri, MTU-1010 and IR-26 recorded lower AUDPC values. Hence, Tetep and Sabitri could be used as donors in hybridization and their plant morphology could be considered as selection guide for improving ShB resistance in rice.

  11. Bio-protective microbial agents from rhizosphere eco-systems trigger plant defense responses provide protection against sheath blight disease in rice (Oryza sativa L.).

    Singh, Udai B; Malviya, Deepti; Wasiullah; Singh, Shailendra; Pradhan, Jatindra K; Singh, Bhanu P; Roy, Manish; Imram, Mohd; Pathak, Neelam; Baisyal, B M; Rai, Jai P; Sarma, B K; Singh, Rajiv K; Sharma, P K; Kaur, Saman Deep; Manna, M C; Sharma, Sushil K; Sharma, Arun K

    2016-11-01

    Sheath blight of rice (Oryza sativa L.) caused by Rhizoctonia solani is a major disease and attempts are being made to develop microbe based technologies for biocontrol of this pathogen. However, the mechanisms of biocontrol are not fully understood and still require indepth study in the backdrop of emerging concepts in biological systems. The present investigation was aimed at deciphering the mechanisms of biocontrol of sheath blight of rice employing Pseudomonas fluorescens and Trichoderma harzianum as model agents for biocontrol. Initially 25, 5 and 5 strains of P. fluorescens, T. viride and T. harzianum, respectively, were screened for their biocontrol potential. Out of which, six strains with higher value of percent inhibition of fungal mycelium in dual plate assay were selected. The role of P. fluorescens, T. viride and T. harzianum were investigated in induction and bioaccumulation of natural antioxidants, defence-related biomolecules and other changes in plant which lead not only to growth promotion but also protection from pathogenic stress conditions in rice. The two most promising strains, P. fluorescens PF-08 and T. harzianum UBSTH-501 selected on the basis of in planta evaluation, when applied individually or in combination, significantly enhanced the accumulation of defence-related biomolecules, enzymes and exhibited biocontrol potential against R. solani. A modified/newly developed delivery system was applied for the first time in the experiments involving inoculation of plants with both bioagents, viz. P. fluorescens PF-08 and T. harzianum UBSTH-501. Results suggested that application of P. fluorescens PF-08 and T. harzianum UBSTH-501 alone or in combination, not only helps in control of the disease but also increases plant growth along with reduction in application of toxic chemical pesticides. Copyright © 2016 Elsevier GmbH. All rights reserved.

  12. Respuesta al glifosato de un aislamiento de Rhizoctonia solani agente causal del anublo de la vaina del arroz, y de cuatro aislamientos de Trichoderma, bajo condiciones in vitro In vitro response of one isolate of Rhizoctonia solani, the pathogen of the rice sheath blight and four isolates of Trichoderma to glyphosate

    Vargas de Álvarez Amparo

    2002-08-01

    de las malezas, estuviera afectando el crecimiento de R. solani o de su antagonista Trichoderma. Una posible relación entre el uso intensivo del herbicida y la incidencia del añublo de la vaina del arroz, debería investigarse en términos de supervivencia
    y germinación de esclerocios del patógeno.
    Rhizoctonia solani Kuhn is the causal agent ofthe sheath
    blight of rice (Orysa saliva L., one of the most important
    rice diseases in Colombia. G1yphosate (N-phosphonomethyl
    glicine acid is sprayed in rice fields as a preplant herbicide, specially aimed at red rice (O. saliva. Preliminary field observations in Tolima, Colombia suggested a relationship between intensive use of glyphosate and sheath blight incidence. Thus, the present study was undertaken to shed light on the effect of glyphosate on R. solani and Thrichoderma sp., a.putative antagonist, under laboratory conditions. The effect of the herbicide was assessed on the growth ofR. solani in summerged culture and solid media and of Thrichoderma on solid media. R. sotaní withstood up to 300 mg L-! without expressing reduction in growth, Increasing concentrations of the herbicide caused growth reduction, and the detrimental effect reached a plateau at 2500 mg L-1. Rhizoctonia growth was not enhanced at any herbicide concentration. The expected concentration of glyphosate in the soil after spraying at commercial dosages would be O, 75 mg Kg', which is well below the observed in vitro threshold. The response of Thrichoderma was similar to that of R. sotaní. Glyphosate did not affect the antagonistic ability of Thrichoderma against R. solani. These results do not support the view that glyphosate, as an herbicide treatment in rice
    field, may affect in any way the population densities of R.
    sotaní or its antagonist Thrichoderma sp. Therefore, the
    postulated connection between intensive herbicide use
    and increased sheath blight incidence is not substantiated
    on

  13. BIOLOGICAL CONTROL OF BANDED LEAF AND SHEATH BLIGHT DISEASE (Rhizoctonia solani KUHN IN CORN WITH FORMULATED Bacillus subtilis BR23

    Amran Muis

    2016-10-01

    Full Text Available Rhizoctonia solani Kuhn. causing banded leaf and sheath blight diseases is one of the important fungi of corn world wide. The fungus is commonly controlled by using fungicide because no resistant variety available. The objective of the study was to develop a seed treatment formulation of the selected Bacillus subtilis to control R. solani in corn. The study was conducted in the Department of Plant Pathology, College of Agriculture, University of the Philippines Los Bañòs, College, Laguna from May 2004 to August 2005, using sweet corn var. IPB Supersweet as test plant. Corn seeds were surface sterilized for 10 minutes in 1% sodium hypochlorite solution and 5% ethanol, washed thrice with sterile distilled water and air-dried. The seeds were coated with formulated B. subtilis BR23 and used for several experiments, such as evaluation for their germination and growth in the laboratory, effectively on R. solani in the baked and nonbaked field soil under greenhouse condition, and in the microplots artificially infested with R. solani. The treatment was compared with other standard seed treatment of synthetic fungicides such as captan (10 g per kg seeds and metalaxyl (10 g per kg seeds. The experiments were designed in a completely random design with three replications. Parameters observed were seed germination, plant height, disease scores, and plant yield. Laboratory formulated B. subtilis BR23 used as seed treatment had no detrimental effects on seed germination and seedling vigor. In microplots artificially infested with a selected highly virulent R. solani, seed treatment with the same formulation increased grain yield by 27% compared to that of the control captan seed treatment with 14.4%. The studies showed the potential of B. subtilis BR23 for commercialization as a seed treatment for the control of banded leaf and sheath blight disease (R. solani in corn.

  14. Detection of rice sheath blight using an unmanned aerial system with high-resolution color and multispectral imaging.

    Zhang, Dongyan; Zhou, Xingen; Zhang, Jian; Lan, Yubin; Xu, Chao; Liang, Dong

    2018-01-01

    Detection and monitoring are the first essential step for effective management of sheath blight (ShB), a major disease in rice worldwide. Unmanned aerial systems have a high potential of being utilized to improve this detection process since they can reduce the time needed for scouting for the disease at a field scale, and are affordable and user-friendly in operation. In this study, a commercialized quadrotor unmanned aerial vehicle (UAV), equipped with digital and multispectral cameras, was used to capture imagery data of research plots with 67 rice cultivars and elite lines. Collected imagery data were then processed and analyzed to characterize the development of ShB and quantify different levels of the disease in the field. Through color features extraction and color space transformation of images, it was found that the color transformation could qualitatively detect the infected areas of ShB in the field plots. However, it was less effective to detect different levels of the disease. Five vegetation indices were then calculated from the multispectral images, and ground truths of disease severity and GreenSeeker measured NDVI (Normalized Difference Vegetation Index) were collected. The results of relationship analyses indicate that there was a strong correlation between ground-measured NDVIs and image-extracted NDVIs with the R2 of 0.907 and the root mean square error (RMSE) of 0.0854, and a good correlation between image-extracted NDVIs and disease severity with the R2 of 0.627 and the RMSE of 0.0852. Use of image-based NDVIs extracted from multispectral images could quantify different levels of ShB in the field plots with an accuracy of 63%. These results demonstrate that a customer-grade UAV integrated with digital and multispectral cameras can be an effective tool to detect the ShB disease at a field scale.

  15. Bacillomycin L and surfactin contribute synergistically to the phenotypic features of Bacillus subtilis 916 and the biocontrol of rice sheath blight induced by Rhizoctonia solani.

    Luo, Chuping; Zhou, Huafei; Zou, Jincheng; Wang, Xiaoyu; Zhang, Rongsheng; Xiang, Yaping; Chen, Zhiyi

    2015-02-01

    The antagonistic activity of lipopeptides in Bacillus subtilis 916 has been well documented, yet relatively little is known about their mechanism in biofilm formation and environmental colonization. This study sought to examine the interaction of B. subtilis 916 on Rhizoctonia solani-infected rice sheath to elucidate the mechanism of colonization on plant leaves. Results showed that the mutants Δbac, Δsrf, and Δsrf + bac of B. subtilis 916, deficient in bacillomycin L and surfactin production, respectively, not only altered colony morphology but also changed swarming motility, reduced antagonistic activity, and decreased biofilm formation. In particular, biofilm formation in mutant Δbac, not Δsrf or Δsrf + bac, were restored with addition of surfactin and bacillomycin L at 10 and 50 μg/mL, respectively. Moreover, surfactin and bacillomycin L were able to restore or enhance swarming motility in the corresponding mutants at 10 μg/mL, respectively. With the aid of green fluorescent protein tagging, it was demonstrated that B. subtilis 916 formed a robust biofilm on the rice sheath blight lesion and colonized well on R. solani-infected rice sheath, while its corresponding mutants performed poorly. These observations also correlated with the rice cultivar pot experiments, in which B. subtilis 916 exhibited greater biocontrol than its mutants. Our results suggest that surfactin and bacillomycin L contribute differently but synergistically to the biocontrol of rice sheath blight in B. subtilis 916 through its antifungal activity, biofilm formation, and colonization.

  16. Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome

    Judelson, H.S.; Ah-Fong, A.M.V.; Aux, G.; Avrova, A.O.; Bruce, C.; Cakir, C.; Cunha, da L.; Grenville-Briggs, L.; Latijnhouwers, M.; Ligterink, W.; Meijer, H.J.G.; Roberts, S.; Thurber, C.S.; Whisson, S.C.; Birch, P.R.J.; Govers, F.; Kamoun, S.; West, van P.; Windass, J.

    2008-01-01

    Much of the pathogenic success of Phytophthora infestans, the potato and tomato late blight agent, relies on its ability to generate from mycelia large amounts of sporangia, which release zoospores that encyst and form infection structures. To better understand these stages, Affymetrix GeneChips

  17. Complete genome sequence of the fire blight pathogen Erwinia pyrifoliae DSM 12163T and comparative genomic insights into plant pathogenicity

    Frey Jürg E

    2010-01-01

    Full Text Available Abstract Background Erwinia pyrifoliae is a newly described necrotrophic pathogen, which causes fire blight on Asian (Nashi pear and is geographically restricted to Eastern Asia. Relatively little is known about its genetics compared to the closely related main fire blight pathogen E. amylovora. Results The genome of the type strain of E. pyrifoliae strain DSM 12163T, was sequenced using both 454 and Solexa pyrosequencing and annotated. The genome contains a circular chromosome of 4.026 Mb and four small plasmids. Based on their respective role in virulence in E. amylovora or related organisms, we identified several putative virulence factors, including type III and type VI secretion systems and their effectors, flagellar genes, sorbitol metabolism, iron uptake determinants, and quorum-sensing components. A deletion in the rpoS gene covering the most conserved region of the protein was identified which may contribute to the difference in virulence/host-range compared to E. amylovora. Comparative genomics with the pome fruit epiphyte Erwinia tasmaniensis Et1/99 showed that both species are overall highly similar, although specific differences were identified, for example the presence of some phage gene-containing regions and a high number of putative genomic islands containing transposases in the E. pyrifoliae DSM 12163T genome. Conclusions The E. pyrifoliae genome is an important addition to the published genome of E. tasmaniensis and the unfinished genome of E. amylovora providing a foundation for re-sequencing additional strains that may shed light on the evolution of the host-range and virulence/pathogenicity of this important group of plant-associated bacteria.

  18. Endophytic Streptomyces spp. as Biocontrol Agents of Rice Bacterial Leaf Blight Pathogen (Xanthomonas oryzae pv. oryzae

    RATIH DEWI HASTUTI

    2012-12-01

    Full Text Available Xanthomonas oryzae pv. oryzae (Xoo, a causal agent of bacterial leaf blight (BLB, is one of the most important pathogens of rice. The effectiveness of ten Streptomyces spp. isolates in suppressing Xoo disease was assessed in planta and in vitro. In planta experiments were carried out in a greenhouse and arranged in a randomized completely block design (RCBD with three replications. Twenty treatments were tested which included plants inoculated with both Streptomyces spp. and Xoo, and plants inoculated with only Streptomyces spp. Plants inoculated with Xoo and sprayed with a chemical bactericide, and plants inoculated with only Xoo served as positive controls, whereas plants not inoculated with either Streptomyces spp. or Xoo were used as negative controls. The results showed that the effect of endophytic Streptomyces spp. on BLB disease expressed as area under disease progress curve (AUDPC was not significantly different to that on control plants (P > 0.05. However, plants inoculated with endophytic Streptomyces spp. were significantly taller and produced higher tiller number than control plants (P < 0.05. Streptomyces spp. isolate AB131-1 gave the highest plant height. In vitro studies on biocontrol mechanisms of selected Streptomyces spp. isolates showed that isolate LBR02 gave the highest inhibition activity on Xoo growth, followed by AB131-1 and AB131-2. Two isolates (AB131-1 and LBR02 were able to produce chitinase, phosphatase, and siderophore which included biocontrol characteristics. Morphological and colonization studies under SEM and light microscopy confirmed that the three isolates were endophytic Streptomyces spp. from different species. These studies found that the paddy plant which was inoculated with endophytic Streptomyces spp. AB131-1 and infected by Xoo could increase the height of plant and number of tillers.

  19. Species tree estimation for the late blight pathogen, Phytophthora infestans, and close relatives.

    Jaime E Blair

    Full Text Available To better understand the evolutionary history of a group of organisms, an accurate estimate of the species phylogeny must be known. Traditionally, gene trees have served as a proxy for the species tree, although it was acknowledged early on that these trees represented different evolutionary processes. Discordances among gene trees and between the gene trees and the species tree are also expected in closely related species that have rapidly diverged, due to processes such as the incomplete sorting of ancestral polymorphisms. Recently, methods have been developed for the explicit estimation of species trees, using information from multilocus gene trees while accommodating heterogeneity among them. Here we have used three distinct approaches to estimate the species tree for five Phytophthora pathogens, including P. infestans, the causal agent of late blight disease in potato and tomato. Our concatenation-based "supergene" approach was unable to resolve relationships even with data from both the nuclear and mitochondrial genomes, and from multiple isolates per species. Our multispecies coalescent approach using both Bayesian and maximum likelihood methods was able to estimate a moderately supported species tree showing a close relationship among P. infestans, P. andina, and P. ipomoeae. The topology of the species tree was also identical to the dominant phylogenetic history estimated in our third approach, Bayesian concordance analysis. Our results support previous suggestions that P. andina is a hybrid species, with P. infestans representing one parental lineage. The other parental lineage is not known, but represents an independent evolutionary lineage more closely related to P. ipomoeae. While all five species likely originated in the New World, further study is needed to determine when and under what conditions this hybridization event may have occurred.

  20. Species tree estimation for the late blight pathogen, Phytophthora infestans, and close relatives.

    Blair, Jaime E; Coffey, Michael D; Martin, Frank N

    2012-01-01

    To better understand the evolutionary history of a group of organisms, an accurate estimate of the species phylogeny must be known. Traditionally, gene trees have served as a proxy for the species tree, although it was acknowledged early on that these trees represented different evolutionary processes. Discordances among gene trees and between the gene trees and the species tree are also expected in closely related species that have rapidly diverged, due to processes such as the incomplete sorting of ancestral polymorphisms. Recently, methods have been developed for the explicit estimation of species trees, using information from multilocus gene trees while accommodating heterogeneity among them. Here we have used three distinct approaches to estimate the species tree for five Phytophthora pathogens, including P. infestans, the causal agent of late blight disease in potato and tomato. Our concatenation-based "supergene" approach was unable to resolve relationships even with data from both the nuclear and mitochondrial genomes, and from multiple isolates per species. Our multispecies coalescent approach using both Bayesian and maximum likelihood methods was able to estimate a moderately supported species tree showing a close relationship among P. infestans, P. andina, and P. ipomoeae. The topology of the species tree was also identical to the dominant phylogenetic history estimated in our third approach, Bayesian concordance analysis. Our results support previous suggestions that P. andina is a hybrid species, with P. infestans representing one parental lineage. The other parental lineage is not known, but represents an independent evolutionary lineage more closely related to P. ipomoeae. While all five species likely originated in the New World, further study is needed to determine when and under what conditions this hybridization event may have occurred.

  1. Effects of temperature on growth and photosynthesis in the seedling stage of the sheath blight-resistant rice genotype 32R

    Huynh Van Kiet

    2016-04-01

    Full Text Available The 32R rice genotype is resistant to sheath blight disease (ShB, with a high-yield potential. We examined effects of temperature on the plant responses of 32R in comparison with those of the ShB-susceptible rice genotype (29S and Nipponbare (Nb, a Japonica standard cultivar. The seedlings at the 4th leaf stage of rice genotypes were exposed to 14/14, 19/14, 25/20, 31/26, 37/32 and 37/37 °C (day/night for 5, 10 and 15 days. The dry weight, leaf area, photosynthesis, contents of ribulose 1,5-bisphosphate carboxylase/oxygenase (Rubisco and chlorophyll contents were examined. The dry weight showed lower in 32R than in 29S and Nb at a low temperature, and total dry weight correlated strongly with root dry weight and leaf area. The relative growth rate (RGR correlated strongly with the net assimilation rate (NAR. Rubisco, chlorophyll contents and the photosynthetic rates were limited at a low temperature and showed lower in 32R than in 29S and Nb. The strong correlations between Rubisco and the rates of maximum photosynthesis and initial slope were found in 32R, but not found in 29S and Nb. In addition, RGR and NAR of 32R correlated positively with Rubisco. These suggest that 32R contains traits of cold-sensitive genotypes that are related to limiting Rubisco at a low temperature, thus diminishing photosynthesis and limiting plant growth. Differences of growth among 32R, 29S and Nb were discussed in the relation of genotypes.

  2. Action and reaction of host and pathogen during Fusarium head blight disease

    Walter, Stephanie; Nicholson, Paul; Doohan, Fiona M

    2010-01-01

    The Fusarium species Fusarium graminearum and Fusarium culmorum, Which are responsible for Fusarium head blight (FHB) disease, reduced world-wide cereal crop yield and, as a consequence of their mycotoxin production in cereal grain, impact on both human and animal health. Their study is greatly p...

  3. Sequencing of the Litchi Downy Blight Pathogen Reveals It Is a Phytophthora Species With Downy Mildew-Like Characteristics.

    Ye, Wenwu; Wang, Yang; Shen, Danyu; Li, Delong; Pu, Tianhuizi; Jiang, Zide; Zhang, Zhengguang; Zheng, Xiaobo; Tyler, Brett M; Wang, Yuanchao

    2016-07-01

    On the basis of its downy mildew-like morphology, the litchi downy blight pathogen was previously named Peronophythora litchii. Recently, however, it was proposed to transfer this pathogen to Phytophthora clade 4. To better characterize this unusual oomycete species and important fruit pathogen, we obtained the genome sequence of Phytophthora litchii and compared it to those from other oomycete species. P. litchii has a small genome with tightly spaced genes. On the basis of a multilocus phylogenetic analysis, the placement of P. litchii in the genus Phytophthora is strongly supported. Effector proteins predicted included 245 RxLR, 30 necrosis-and-ethylene-inducing protein-like, and 14 crinkler proteins. The typical motifs, phylogenies, and activities of these effectors were typical for a Phytophthora species. However, like the genome features of the analyzed downy mildews, P. litchii exhibited a streamlined genome with a relatively small number of genes in both core and species-specific protein families. The low GC content and slight codon preferences of P. litchii sequences were similar to those of the analyzed downy mildews and a subset of Phytophthora species. Taken together, these observations suggest that P. litchii is a Phytophthora pathogen that is in the process of acquiring downy mildew-like genomic and morphological features. Thus P. litchii may provide a novel model for investigating morphological development and genomic adaptation in oomycete pathogens.

  4. Gene expression profiling during asexual development of the late blight pathogen Phytophthora infestans reveals a highly dynamic transcriptome.

    Judelson, Howard S; Ah-Fong, Audrey M V; Aux, George; Avrova, Anna O; Bruce, Catherine; Cakir, Cahid; da Cunha, Luis; Grenville-Briggs, Laura; Latijnhouwers, Maita; Ligterink, Wilco; Meijer, Harold J G; Roberts, Samuel; Thurber, Carrie S; Whisson, Stephen C; Birch, Paul R J; Govers, Francine; Kamoun, Sophien; van West, Pieter; Windass, John

    2008-04-01

    Much of the pathogenic success of Phytophthora infestans, the potato and tomato late blight agent, relies on its ability to generate from mycelia large amounts of sporangia, which release zoospores that encyst and form infection structures. To better understand these stages, Affymetrix GeneChips based on 15,650 unigenes were designed and used to profile the life cycle. Approximately half of P. infestans genes were found to exhibit significant differential expression between developmental transitions, with approximately (1)/(10) being stage-specific and most changes occurring during zoosporogenesis. Quantitative reverse-transcription polymerase chain reaction assays confirmed the robustness of the array results and showed that similar patterns of differential expression were obtained regardless of whether hyphae were from laboratory media or infected tomato. Differentially expressed genes encode potential cellular regulators, especially protein kinases; metabolic enzymes such as those involved in glycolysis, gluconeogenesis, or the biosynthesis of amino acids or lipids; regulators of DNA synthesis; structural proteins, including predicted flagellar proteins; and pathogenicity factors, including cell-wall-degrading enzymes, RXLR effector proteins, and enzymes protecting against plant defense responses. Curiously, some stage-specific transcripts do not appear to encode functional proteins. These findings reveal many new aspects of oomycete biology, as well as potential targets for crop protection chemicals.

  5. Genetic Divergence and Chemotype Diversity in the Fusarium Head Blight Pathogen Fusarium poae.

    Vanheule, Adriaan; De Boevre, Marthe; Moretti, Antonio; Scauflaire, Jonathan; Munaut, Françoise; De Saeger, Sarah; Bekaert, Boris; Haesaert, Geert; Waalwijk, Cees; van der Lee, Theo; Audenaert, Kris

    2017-08-23

    Fusarium head blight is a disease caused by a complex of Fusarium species. F. poae is omnipresent throughout Europe in spite of its low virulence. In this study, we assessed a geographically diverse collection of F. poae isolates for its genetic diversity using AFLP (Amplified Fragment Length Polymorphism). Furthermore, studying the mating type locus and chromosomal insertions, we identified hallmarks of both sexual recombination and clonal spread of successful genotypes in the population. Despite the large genetic variation found, all F. poae isolates possess the nivalenol chemotype based on Tri7 sequence analysis. Nevertheless, Tri gene clusters showed two layers of genetic variability. Firstly, the Tri1 locus was highly variable with mostly synonymous mutations and mutations in introns pointing to a strong purifying selection pressure. Secondly, in a subset of isolates, the main trichothecene gene cluster was invaded by a transposable element between Tri5 and Tri6 . To investigate the impact of these variations on the phenotypic chemotype, mycotoxin production was assessed on artificial medium. Complex blends of type A and type B trichothecenes were produced but neither genetic variability in the Tri genes nor variability in the genome or geography accounted for the divergence in trichothecene production. In view of its complex chemotype, it will be of utmost interest to uncover the role of trichothecenes in virulence, spread and survival of F. poae .

  6. Biological Efficacy of Streptomyces sp. Strain BN1 against the Cereal Head Blight Pathogen Fusarium graminearum

    Boknam Jung

    2013-03-01

    Full Text Available Fusarium head blight (FHB caused by the filamentous fungus Fusarium graminearum is one of the most severe diseases threatening the production of small grains. Infected grains are often contaminated with mycotoxins such as zearalenone and trichothecences. During survey of contamination by FHB in rice grains, we found a bacterial isolate, designated as BN1, antagonistic to F. graminearum. The strain BN1 had branching vegetative hyphae and spores, and its aerial hyphae often had long, straight filaments bearing spores. The 16S rRNA gene of BN1 had 100% sequence identity with those found in several Streptomyces species. Phylogenetic analysis of ITS regions showed that BN1 grouped with S. sampsonii with 77% bootstrap value, suggesting that BN1 was not a known Streptomyces species. In addition, the efficacy of the BN1 strain against F. graminearum strains was tested both in vitro and in vivo. Wheat seedling length was significantly decreased by F. graminearum infection. However, this effect was mitigated when wheat seeds were treated with BN1 spore suspension prior to F. graminearum infection. BN1 also significantly decreased FHB severity when it was sprayed onto wheat heads, whereas BN1 was not effective when wheat heads were point inoculated. These results suggest that spraying of BN1 spores onto wheat heads during the wheat flowering season can be efficient for plant protection. Mechanistic studies on the antagonistic effect of BN1 against F. graminearum remain to be analyzed.

  7. Regional differences in the composition of Fusarium Head Blight pathogens and mycotoxins associated with wheat in Mexico.

    Cerón-Bustamante, Minely; Ward, Todd J; Kelly, Amy; Vaughan, Martha M; McCormick, Susan P; Cowger, Christina; Leyva-Mir, Santos G; Villaseñor-Mir, Héctor E; Ayala-Escobar, Victoria; Nava-Díaz, Cristian

    2018-05-20

    Fusarium Head Blight (FHB) is a destructive disease of small grain cereals and a major food safety concern. Epidemics result in substantial yield losses, reduction in crop quality, and contamination of grains with trichothecenes and other mycotoxins. A number of different fusaria can cause FHB, and there are significant regional differences in the occurrence and prevalence of FHB pathogen species and their associated mycotoxins. Information on FHB pathogen and mycotoxin diversity in Mexico has been extremely limited, but is needed to improve disease and mycotoxin control efforts. To address this, we used a combination of DNA sequence-based methods and in-vitro toxin analyses to characterize FHB isolates collected from symptomatic wheat in Mexico during the 2013 and 2014 growing seasons. Among 116 Fusarium isolates, we identified five species complexes including nine named Fusarium species and 30 isolates representing unnamed or potentially novel species. Significant regional differences (P 90% of isolates from the Mixteca region in southern Mexico, whereas F. avenaceum and related members of the F. tricinctum species complex (FTSC) accounted for nearly 75% of isolates from the Highlands region in Central Mexico. F. graminearum, which is the dominant FHB pathogen in other parts of North America, was not present among the isolates from Mexico. F. boothii isolates had the 15-acetyldeoxynivalenol toxin type, and some of the minor FHB species produced trichothecenes, such as nivalenol, T-2 toxin and diacetoxyscirpenol. None of the FTSC isolates tested was able to produce trichothecenes, but many produced chlamydosporol and enniatin B. Published by Elsevier B.V.

  8. The prevalence and impact of Fusarium head blight pathogens and mycotoxins on malting barley quality in UK

    Nielsen, L.K.; Cook, D.J.; Edwards, S.G.; Ray, R.V.

    2014-01-01

    Fusarium head blight (FHB) caused by Fusarium and Microdochium species can significantly affect the yield of barley grain as well as the quality and safety of malt and beer. The present study provides new knowledge on the impacts of the FHB pathogen complex on the malting and brewing quality parameters of naturally infected barley. Quantitative real-time PCR and liquid chromatography double mass spectrometry were used to quantify the predominant FHB pathogens and Fusarium mycotoxins, respectively, in commercially grown UK malting barley samples collected between 2007 and 2011. The predominant Fusarium species identified across the years were F. poae, F. tricinctum and F. avenaceum. Microdochium majus was the predominant Microdochium species in 2007, 2008, 2010 and 2011 whilst Microdochium nivale predominated in 2009. Deoxynivalenol and zearalenone quantified in samples collected between 2007 and 2009 were associated with F. graminearum and F. culmorum, whilst HT-2 and T-2, and nivalenol in samples collected between 2010 and 2011 correlated positively with F. langsethiae and F. poae, respectively. Analysis of the regional distribution and yearly variation in samples from 2010 to 2011 showed significant differences in the composition of the FHB species complex. In most regions (Scotland, the South and North of England) the harvest in 2010 had higher concentrations of Fusarium spp. than in 2011, although no significant difference was observed in the Midlands between the two years. Microdochium DNA was significantly higher in 2011 and in the North of England and Scotland compared to the South or Midlands regions. Pathogens of the FHB complex impacted negatively on grain yield and quality parameters. Thousand grain weight of malting barley was affected significantly by M. nivale and M. majus whilst specific weight correlated negatively with F. avenaceum and F. graminearum. To determine the impact of sub-acute infections of the identified Fusarium and Microdochium

  9. Phage induction by UV and mitomycin C in Pseudomonas mori, the pathogen of bacterial blight of mulberry

    Sato, Mamoru

    1979-01-01

    Phage induction by ultraviolet radiation (UV) and mitomycin C (MMC) in some lysogenic strains of Pseudomonas mori, the pathogen of bacterial blight of mulberry, was examined. Among 5 strains tested, in the strains S 6804 and S 6805, phage was induced by both UV and MMC, and in the strain M 5, only by MMC. In the strains S 6807 and S 6808, it was not induced by both these inducers. The rate of phage production in the strain 6805 was highest when it was exposed to UV (15 W UV lamp, 40 cm) for 5 seconds, by which about 90% of the bacteria were killed, and decreased rapidly by further extending the exposure time. The bacteria suspended in 0.02 M magnesium solution were more sensitive in responding to UV than those suspended in nutrient broth, but after the UV treatment, nutrient broth was more favorable than magnesium solution for phage production. The MMC added to nutrient broth induced phage production at the concentration from 0.5 to 5 μg/ml. The strains induced by either UV or MMC their temperate phages after about 3 hours of latent period. The phage induction by UV was almost completely suppressed by 40 minute exposure to fluorescent light (a 15 W fluorescent lamp, 10 cm) or by 5 minute exposure to sunlight, given within 45 minutes after the UV treatment, i.e. within 1/4 of the latent period. Thus, the photoreversion of the UV effect on phage induction was observed in Ps. mori as well as in Ps. pyocyanea and E. coli. (Kaihara, S.)

  10. Fire blight in Georgia

    Dali L. Gaganidze

    2018-03-01

    Full Text Available Fire blight is distinguished among the fruit tree diseases by harmfulness. Fire blight damages about 180 cultural and wild plants belonging to the Rosaceae family. Quince, apple and pear are the most susceptible to the disease. At present, the disease occurs in over 40 countries of Europe and Asia. Economic damage caused by fire blight is expressed not only in crop losses, but also, it poses threat of eradication to entire fruit tree gardens. Erwinia amylovora, causative bacteria of fire blight in fruit trees, is included in the A2 list of quarantine organisms. In 2016, the employees of the Plant Pest Diagnostic Department of the Laboratory of the Georgian Ministry of Agriculture have detected Erwinia amylovora in apple seedlings from Mtskheta district. National Food Agency, Ministry of Agriculture of Georgia informed FAO on pathogen detection. The aim of the study is detection of the bacterium Erwinia amylovora by molecular method (PCR in the samples of fruit trees, suspicious on fire blight collected in the regions of Eastern (Kvemo Kartli, Shida Kartli and Kakheti and Western Georgia (Imereti.The bacterium Erwinia amylovora was detected by real time and conventional PCR methods using specific primers and thus the fire blight disease confirmed in 23 samples of plant material from Shida Kartli (11 apples, 6 pear and 6 quince samples, in 5 samples from Kvemo Kartli (1 quince and 4 apple samples, in 2 samples of apples from Kakheti region and 1 sample of pear collected in Imereti (Zestafoni. Keywords: Fire blight, Erwinia amylovora, Conventional PCR, Real time PCR, DNA, Bacterium

  11. Exploring new roles for the rpoS gene in the survival and virulence of the fire blight pathogen Erwinia amylovora.

    Santander, Ricardo D; Monte-Serrano, Mercedes; Rodríguez-Herva, José J; López-Solanilla, Emilia; Rodríguez-Palenzuela, Pablo; Biosca, Elena G

    2014-12-01

    Erwinia amylovora causes fire blight in economically important plants of the family Rosaceae. This bacterial pathogen spends part of its life cycle coping with starvation and other fluctuating environmental conditions. In many Gram-negative bacteria, starvation and other stress responses are regulated by the sigma factor RpoS. We obtained an E. amylovora rpoS mutant to explore the role of this gene in starvation responses and its potential implication in other processes not yet studied in this pathogen. Results showed that E. amylovora needs rpoS to develop normal starvation survival and viable but nonculturable (VBNC) responses. Furthermore, this gene contributed to stationary phase cross-protection against oxidative, osmotic, and acid stresses and was essential for cross-protection against heat shock, but nonessential against acid shock. RpoS also mediated regulation of motility, exopolysaccharide synthesis, and virulence in immature loquats, but not in pear plantlets, and contributed to E. amylovora survival in nonhost tissues during incompatible interactions. Our results reveal some unique roles for the rpoS gene in E. amylovora and provide new knowledge on the regulation of different processes related to its ecology, including survival in different environments and virulence in immature fruits. © 2014 Federation of European Microbiological Societies. Published by John Wiley & Sons Ltd. All rights reserved.

  12. Diversity, evolution, and functionality of clustered regularly interspaced short palindromic repeat (CRISPR) regions in the fire blight pathogen Erwinia amylovora.

    Rezzonico, Fabio; Smits, Theo H M; Duffy, Brion

    2011-06-01

    The clustered regularly interspaced short palindromic repeat (CRISPR)/Cas system confers acquired heritable immunity against mobile nucleic acid elements in prokaryotes, limiting phage infection and horizontal gene transfer of plasmids. In CRISPR arrays, characteristic repeats are interspersed with similarly sized nonrepetitive spacers derived from transmissible genetic elements and acquired when the cell is challenged with foreign DNA. New spacers are added sequentially and the number and type of CRISPR units can differ among strains, providing a record of phage/plasmid exposure within a species and giving a valuable typing tool. The aim of this work was to investigate CRISPR diversity in the highly homogeneous species Erwinia amylovora, the causal agent of fire blight. A total of 18 CRISPR genotypes were defined within a collection of 37 cosmopolitan strains. Strains from Spiraeoideae plants clustered in three major groups: groups II and III were composed exclusively of bacteria originating from the United States, whereas group I generally contained strains of more recent dissemination obtained in Europe, New Zealand, and the Middle East. Strains from Rosoideae and Indian hawthorn (Rhaphiolepis indica) clustered separately and displayed a higher intrinsic diversity than that of isolates from Spiraeoideae plants. Reciprocal exclusion was generally observed between plasmid content and cognate spacer sequences, supporting the role of the CRISPR/Cas system in protecting against foreign DNA elements. However, in several group III strains, retention of plasmid pEU30 is inconsistent with a functional CRISPR/Cas system.

  13. The receptor-like kinase SERK3/BAK1 is required for basal resistance against the late blight pathogen phytophthora infestans in Nicotiana benthamiana.

    Angela Chaparro-Garcia

    2011-01-01

    Full Text Available The filamentous oomycete plant pathogen Phytophthora infestans causes late blight, an economically important disease, on members of the nightshade family (Solanaceae, such as the crop plants potato and tomato. The related plant Nicotiana benthamiana is a model system to study plant-pathogen interactions, and the susceptibility of N. benthamiana to Phytophthora species varies from susceptible to resistant. Little is known about the extent to which plant basal immunity, mediated by membrane receptors that recognise conserved pathogen-associated molecular patterns (PAMPs, contributes to P. infestans resistance.We found that different species of Phytophthora have varying degrees of virulence on N. benthamiana ranging from avirulence (incompatible interaction to moderate virulence through to full aggressiveness. The leucine-rich repeat receptor-like kinase (LRR-RLK BAK1/SERK3 is a major modulator of PAMP-triggered immunity (PTI in Arabidopsis thaliana and N. benthamiana. We cloned two NbSerk3 homologs, NbSerk3A and NbSerk3B, from N. benthamiana based on sequence similarity to the A. thaliana gene. N. benthamiana plants silenced for NbSerk3 showed markedly enhanced susceptibility to P. infestans infection but were not altered in resistance to Phytophthora mirabilis, a sister species of P. infestans that specializes on a different host plant. Furthermore, silencing of NbSerk3 reduced the cell death response triggered by the INF1, a secreted P. infestans protein with features of PAMPs.We demonstrated that N. benthamiana NbSERK3 significantly contributes to resistance to P. infestans and regulates the immune responses triggered by the P. infestans PAMP protein INF1. In the future, the identification of novel surface receptors that associate with NbSERK3A and/or NbSERK3B should lead to the identification of new receptors that mediate recognition of oomycete PAMPs, such as INF1.

  14. A complete structural characterization of the desferrioxamine E biosynthetic pathway from the fire blight pathogen Erwinia amylovora.

    Salomone-Stagni, Marco; Bartho, Joseph D; Polsinelli, Ivan; Bellini, Dom; Walsh, Martin A; Demitri, Nicola; Benini, Stefano

    2018-02-08

    The Gram-negative bacterium Erwinia amylovora is the etiological agent of fire blight, a devastating disease which affects Rosaceae such as apple, pear and quince. The siderophore desferrioxamine E plays an important role in bacterial pathogenesis by scavenging iron from the host. DfoJ, DfoA and DfoC are the enzymes responsible for desferrioxamine production starting from lysine. We have determined the crystal structures of each enzyme in the desferrioxamine E pathway and demonstrate that the biosynthesis involves the concerted action of DfoJ, followed by DfoA and lastly DfoC. These data provide the first crystal structures of a Group II pyridoxal-dependent lysine decarboxylase, a cadaverine monooxygenase and a desferrioxamine synthetase. DfoJ is a homodimer made up of three domains. Each monomer contributes to the completion of the active site, which is positioned at the dimer interface. DfoA is the first structure of a cadaverine monooxygenase. It forms homotetramers whose subunits are built by two domains: one for FAD and one for NADP + binding, the latter of which is formed by two subdomains. We propose a model for substrate binding and the role of residues 43-47 as gate keepers for FAD binding and the role of Arg97 in cofactors turnover. DfoC is the first structure of a desferrioxamine synthetase and the first of a multi-enzyme siderophore synthetase coupling an acyltransferase domain with a Non-Ribosomal Peptide Synthetase (NRPS)-Independent Siderophore domain (NIS). Copyright © 2018 Elsevier Inc. All rights reserved.

  15. Discovery of plant phenolic compounds that act as type III secretion system inhibitors or inducers of the fire blight pathogen, Erwinia amylovora.

    Khokhani, Devanshi; Zhang, Chengfang; Li, Yan; Wang, Qi; Zeng, Quan; Yamazaki, Akihiro; Hutchins, William; Zhou, Shan-Shan; Chen, Xin; Yang, Ching-Hong

    2013-09-01

    Erwinia amylovora causes a devastating disease called fire blight in rosaceous plants. The type III secretion system (T3SS) is one of the important virulence factors utilized by E. amylovora in order to successfully infect its hosts. By using a green fluorescent protein (GFP) reporter construct combined with a high-throughput flow cytometry assay, a library of phenolic compounds and their derivatives was studied for their ability to alter the expression of the T3SS. Based on the effectiveness of the compounds on the expression of the T3SS pilus, the T3SS inhibitors 4-methoxy-cinnamic acid (TMCA) and benzoic acid (BA) and one T3SS inducer, trans-2-(4-hydroxyphenyl)-ethenylsulfonate (EHPES), were chosen for further study. Both the T3SS inhibitors (TMCA and BA) and the T3SS inducer (EHPES) were found to alter the expression of T3SS through the HrpS-HrpL pathway. Additionally, TMCA altered T3SS expression through the rsmBEa-RsmAEa system. Finally, we found that TMCA and BA weakened the hypersensitive response (HR) in tobacco by suppressing the T3SS of E. amylovora. In our study, we identified phenolic compounds that specifically targeted the T3SS. The T3SS inhibitor may offer an alternative approach to antimicrobial therapy by targeting virulence factors of bacterial pathogens.

  16. Rice bacterial blight pathogen Xanthomonas oryzae pv. oryzae produces multiple DSF-family signals in regulation of virulence factor production

    Cha Jae-Soon

    2010-07-01

    Full Text Available Abstract Background Xanthomonas oryzae pv. oryzae (Xoo is the causal agent of rice bacterial blight disease. Xoo produces a range of virulence factors, including EPS, extracellular enzyme, iron-chelating siderophores, and type III-secretion dependent effectors, which are collectively essential for virulence. Genetic and genomics evidence suggest that Xoo might use the diffusible signal factor (DSF type quorum sensing (QS system to regulate the virulence factor production. However, little is known about the chemical structure of the DSF-like signal(s produced by Xoo and the factors influencing the signal production. Results Xoo genome harbours an rpf cluster comprising rpfB, rpfF, rpfC and rpfG. The proteins encoded by these genes are highly homologous to their counterparts in X. campestris pv. campestris (Xcc, suggesting that Xcc and Xoo might use similar mechanisms for DSF biosynthesis and autoregulation. Consistent with in silico analysis, the rpfF mutant was DSF-deficient and the rpfC mutant produced about 25 times higher DSF-like activity than the wild type Xoo strain KACC10331. From the supernatants of rpfC mutant, we purified three compounds showing strong DSF-like activity. Mass spectrometry and NMR analysis revealed that two of them were the previously characterized DSF and BDSF; the third one was a novel unsaturated fatty acid with 2 double bonds and was designated as CDSF in this study. Further analysis showed that all the three DSF-family signals were synthesized via the enzyme RpfF encoded by Xoo2868. DSF and BDSF at a final concentration of 3 μM to the rpfF mutant could fully restore its extracellular xylanase activity and EPS production to the wild type level, but CDSF was less active than DSF and BDSF in induction of EPS and xylanase. DSF and CDSF shared a similar cell density-dependent production time course with the maximum production being detected at 42 h after inoculation, whereas the maximum production of BDSF was observed

  17. Evidence that the Ceratobasidium-like white-thread blight and black rot fungal pathogens from persimmon and tea crops in the Brazilian Atlantic Forest agroecosystem are two distinct phylospecies

    Paulo C. Ceresini

    2012-01-01

    Full Text Available The white-thread blight and black rot (WTBR caused by basidiomycetous fungi of the genus Ceratobasidium is emerging as an important plant disease in Brazil, particularly for crop species in the Ericales such as persimmon (Diospyros kaki and tea (Camellia sinensis. However, the species identity of the fungal pathogen associated with either of these hosts is still unclear. In this work, we used sequence variation in the internal transcribed spacer regions, including the 5.8S coding region of rDNA (ITS-5.8S rDNA, to determine the phylogenetic placement of the local white-thread-blight-associated populations of Ceratobasidium sp. from persimmon and tea, in relation to Ceratobasidium species already described world-wide. The two sister populations of Ceratobasidium sp. from persimmon and tea in the Brazilian Atlantic Forest agroecosystem most likely represent distinct species within Ceratobasidium and are also distinct from C. noxium, the etiological agent of the first description of white-thread blight disease that was reported on coffee in India. The intraspecific variation for the two Ceratobasidium sp. populations was also analyzed using three mitochondrial genes (ATP6, nad1 and nad2. As reported for other fungi, variation in nuclear and mitochondrial DNA was incongruent. Despite distinct variability in the ITS-rDNA region these two populations shared similar mitochondrial DNA haplotypes.

  18. Evidence that the Ceratobasidium-like white-thread blight and black rot fungal pathogens from persimmon and tea crops in the Brazilian Atlantic Forest agroecosystem are two distinct phylospecies.

    Ceresini, Paulo C; Costa-Souza, Elaine; Zala, Marcello; Furtado, Edson L; Souza, Nilton L

    2012-04-01

    The white-thread blight and black rot (WTBR) caused by basidiomycetous fungi of the genus Ceratobasidium is emerging as an important plant disease in Brazil, particularly for crop species in the Ericales such as persimmon (Diospyros kaki) and tea (Camellia sinensis). However, the species identity of the fungal pathogen associated with either of these hosts is still unclear. In this work, we used sequence variation in the internal transcribed spacer regions, including the 5.8S coding region of rDNA (ITS-5.8S rDNA), to determine the phylogenetic placement of the local white-thread-blight-associated populations of Ceratobasidium sp. from persimmon and tea, in relation to Ceratobasidium species already described world-wide. The two sister populations of Ceratobasidium sp. from persimmon and tea in the Brazilian Atlantic Forest agroecosystem most likely represent distinct species within Ceratobasidium and are also distinct from C. noxium, the etiological agent of the first description of white-thread blight disease that was reported on coffee in India. The intraspecific variation for the two Ceratobasidium sp. populations was also analyzed using three mitochondrial genes (ATP6, nad1 and nad2). As reported for other fungi, variation in nuclear and mitochondrial DNA was incongruent. Despite distinct variability in the ITS-rDNA region these two populations shared similar mitochondrial DNA haplotypes.

  19. Sirococcus Shoot Blight

    Thomas H. Nicholls; Kathryn Robbins

    1984-01-01

    Sirococcus shoot blight, caused by the fungus Sirococcus strobilinus Preuss, affects conifers in the Northern United States and southern Canada. The fungus infects the new shoots; diseased seedlings and saplings are especially affected. In the United States, sirococcus shoot blight has become increasingly widespread since the early 1970's. When favorable...

  20. Potatoes, pathogens and pests

    Lazebnik, Jenny

    2017-01-01

    Currently, fungicides are necessary to protect potato crops against late blight, Phytophthora infestans, one of the world’s most damaging crop pathogens. The introgression of plant resistance genes from wild potato species targeted specifically to the late blight pathogen into

  1. Agro-ecological variations of sheath rot disease of rice caused by Sarocladium oryzae and DNA fingerprinting of the pathogen's population structure.

    Tajul Islam Chowdhury, M; Salim Mian, M; Taher Mia, M A; Rafii, M Y; Latif, M A

    2015-12-28

    To examine the impact of regional and seasonal variations on the incidence and severity of sheath rot, a major seed-borne disease of rice caused by Sarocladium oryzae, data on incidence and severity were collected from 27 selected fields in the Gazipur, Rangpur, Bogra, Chittagong, Comilla, Gopalgonj, Jessore, Manikgonj, and Bhola districts of Bangladesh in rain-fed and irrigated conditions. Cultural variability of 29 pathogen isolates obtained from 8 different locations was studied on potato dextrose agar (PDA) and genetic variability was determined by DNA fingerprinting using variable number tandem repeat-polymerase chain reaction markers. Overall, disease incidence and severity were higher in irrigated rice. Disease incidence and severity were highest in the Bhola district in rain-fed rice and lowest in irrigated rice. Mycelial growth of 29 representative isolates was found to vary on PDA and the isolates were divided into 6 groups. The range of the overall size of conidia of the selected isolates was 2.40-7.20 x 1.20-2.40 μm. Analysis of the DNA fingerprint types of the 29 isolates of S. oryzae, obtained from the amplification reactions, revealed 10 fingerprinting types (FPTs) that were 80% similar. FPT-1 was the largest group and included 13 isolates (44.8%), while FPT-2 was the third largest group and included 3 isolates. Each of FPT-3, 4, 5, and 6 included only 1 isolate. We observed no relationship between cultural and genetic groupings.

  2. Eficiência de diferentes moléculas na redução dos sintomas da queima das bainhas em arroz e no crescimento de Rhizoctonia solani in vitro Efficiency of different molecules on the reduction of sheath blight symptoms in rice and on Rhizoctonia solani growth in vitro

    Daniel Augusto Schurt

    2013-04-01

    Full Text Available Este estudo verificou a eficiência da aplicação de diferentes moléculas em reduzir o comprimento relativo da lesão (CRL da queima das bainhas em arroz. Plantas dos cultivares BR-Irga 409 e Labelle foram cultivadas em solução nutritiva e inoculadas com Rhizoctonia solani, no estádio de máximo perfilhamento. Às 24 horas antes da inoculação, as bainhas das plantas foram pulverizadas com soluções de silicato de potássio (SP, silicato de potássio + fósforo (SP+F, Acibenzolar-S-Metil (ASM, fungicida Carbendazim, quitosana desacetilada (QD, etileno (ET e fosfito de potássio (FP. Plantas cujas bainhas foram pulverizadas com água destilada serviram como testemunhas. O efeito das moléculas contidas nesses produtos no crescimento micelial de R. solani foi testado in vitro. Para BR-Irga 409, o CRL foi menor com a aplicação do FP, em relação aos demais tratamentos, exceto o Carbendazim. A aplicação do Carbendazim reduziu em 86,1% o CRL, em relação à testemunha. O CRL foi significativamente menor no cultivar BR-Irga 409 do que no 'Labelle', com aplicação do FP. O crescimento micelial de R. solani foi reduzido apenas pelo FP e Carbendazim, em comparação com os demais tratamentos. Não houve diferença significativa entre os tratamentos testemunha, SP e SP+F para a concentração de Si nas bainhas das plantas dos dois cultivares.This study aimed to test the efficiency of different molecules on the reduction of the relative lesion extension (RLE of sheath blight in rice. Plants of cultivars BR-Irga 409 and Labelle were grown in nutrient solution and inoculated with Rhizoctonia solani at the maximum tillering stage. At 24 hours before inoculation, sheaths of plants were sprayed with solutions of potassium silicate (PS, potassium silicate + phosphorus (PS+P, Acibenzolar-S-Methyl (ASM, Carbendazim fungicide, deacetylated chitosan (DC, ethylene (ET and potassium phosphite (PP. Sheaths from plants sprayed with water served as the

  3. Biological control of chestnut blight in Croatia: an interaction between host sweet chestnut, its pathogen Cryphonectria parasitica and the biocontrol agent Cryphonectria hypovirus 1.

    Krstin, Ljiljana; Katanić, Zorana; Ježić, Marin; Poljak, Igor; Nuskern, Lucija; Matković, Ivana; Idžojtić, Marilena; Ćurković-Perica, Mirna

    2017-03-01

    Chestnut blight, caused by the fungus Cryphonectria parasitica, is a severe chestnut disease that can be controlled with naturally occurring hypoviruses in many areas of Europe. The aim of this research was to measure the effect of different Cryphonectria hypovirus 1 (CHV1) strains on the growth of the fungal host and select strains that could potentially be used for human-mediated biocontrol in forests and orchards, and to investigate whether and how chestnut-fungus-virus interactions affect the development and growth of the lesion area on cut stems. Two Croatian CHV1 strains (CR23 and M56/1) were selected as potential biocontrol agents. The sequencing of CHV1/ORF-A showed that both of these virus strains belonged to the Italian subtype of CHV1. In vitro transfection of selected virus strains from hypovirulent to genetically diverse virus-free fungal isolates and subsequent inoculation of all virus/fungus combinations on stems of genetically diverse sweet chestnut trees revealed that Croatian virus strain CR23 had an equally hypovirulent effect on the host as the strong French strain CHV1-EP713, while M56/1 had a weaker effect. Furthermore, it was shown that in some cases the same hypovirus/fungus combinations induced various degrees of canker development on different chestnut genotypes. Some CHV1 strains belonging to the Italian subtype have similar hypovirulent effects on C. parasitica to those belonging to the French subtype. Furthermore, chestnut susceptibility and recovery could be influenced by the response of chestnut trees to particular hypovirulent C. parasitica isolates, and virus-fungus-chestnut interactions could have significant implications for the success of chestnut blight biocontrol. © 2016 Society of Chemical Industry. © 2016 Society of Chemical Industry.

  4. Morphological characterization of fungi associated with the ascochyta blight complex and pathogenic variability of Mycosphaerella pinodes on field pea crops in central Alberta

    Hafiz Ahmed

    2015-02-01

    Full Text Available Field pea crops in central Alberta were surveyed for ascochyta blight from 2011 to 2012 and fungal isolates were recovered from foliar lesions on selected plants. Cultural and microscopic characterization of the 275 isolates obtained revealed that 272 were of Mycosphaerella pinodes and three were of Phoma medicaginis var. pinodella. Ascochyta pisi or Phoma koolunga were not identified. Isolates of M. pinodes were divided into two groups, GI and GII, based on visual assessment of culture characteristics. GI isolates (light to dark, mostly gray colony color; pycnidial distribution radial and concentric; conidia 10.5–14.5 × 4.2–6.2 μm most with one septum, occasionally two, constricted at the septum; spore mass light buff to flesh color were predominant (83%, while GII isolates (dark to gray colony color; pycnidia abundant; conidia 8–16 × 3.5–6.2 μm most with 1 septum, constricted at the septum; spore mass light buff to flesh color were less common (17%. The cultures of GII isolates were similar to recent descriptions of A. pisi, but they differed in spore color. In a host differential study, 13 pathotypes of M. pinodes were identified from 110 single-spore isolates. Pathotype I was predominant (88 isolates and virulent on all nine differential genotypes. The other pathotypes (pathotypes II–XIII were rare (1–6 isolates of each. Comparison of the present results with earlier studies suggests that pathotype I has been prevalent for many years, and that its aggressiveness on the host differentials has increased over time. Emphasis should be placed on breeding for resistance to M. pinodes in field pea cultivars intended for deployment in central Alberta.

  5. Coincidence in map positions between pathogen-induced defense-responsive genes and quantitative resistance loci in rice

    熊敏; 王石平; 张启发

    2002-01-01

    Quantitative disease resistance conferred by quantitative trait loci (QTLs) is presumably of wider spectrum and durable. Forty-four cDNA clones, representing 44 defense-responsive genes, were fine mapped to 56 loci distributed on 9 of the 12 rice chromosomes. The locations of 32 loci detected by 27 cDNA clones were associated with previously identified resistance QTLs for different rice diseases, including blast, bacterial blight, sheath blight and yellow mottle virus. The loci detected by the same multiple-copy cDNA clones were frequently located on similar locations of different chromosomes. Some of the multiple loci detected by the same clones were all associated with resistance QTLs. These results suggest that some of the genes may be important components in regulation of defense responses against pathogen invasion and they may be the candidates for studying the mechanism of quantitative disease resistance in rice.

  6. Harnessing the microbiome to reduce Fusarium head blight

    Fusarium graminearum (Fg), the primary fungal pathogen responsible for Fusarium head blight (FHB), reduces crop yield and contaminates grain with trichothecene mycotoxins that are deleterious to plant, human and animal health. In this presentation, we will discuss two different research projects tha...

  7. Communication through plasma sheaths

    Korotkevich, A. O.; Newell, A. C.; Zakharov, V. E.

    2007-01-01

    We wish to transmit messages to and from a hypersonic vehicle around which a plasma sheath has formed. For long distance transmission, the signal carrying these messages must be necessarily low frequency, typically 2 GHz, to which the plasma sheath is opaque. The idea is to use the plasma properties to make the plasma sheath appear transparent

  8. Induction of antimicrobial 3-deoxyflavonoids in pome fruit trees controls fire blight.

    Halbwirth, Heidrun; Fischer, Thilo C; Roemmelt, Susanne; Spinelli, Francesco; Schlangen, Karin; Peterek, Silke; Sabatini, Emidio; Messina, Christian; Speakman, John-Bryan; Andreotti, Carlo; Rademacher, Wilhelm; Bazzi, Carlo; Costa, Guglielmo; Treutter, Dieter; Forkmann, Gert; Stich, Karl

    2003-01-01

    Fire blight, a devastating bacterial disease in pome fruits, causes severe economic losses worldwide. Hitherto, an effective control could only be achieved by using antibiotics, but this implies potential risks for human health, livestock and environment. A new approach allows transient inhibition of a step in the flavonoid pathway, thereby inducing the formation of a novel antimicrobial 3-deoxyflavonoid controlling fire blight in apple and pear leaves. This compound is closely related to natural phytoalexins in sorghum. The approach does not only provide a safe method to control fire blight: Resistance against different pathogens is also induced in other crop plants.

  9. Urban blight and urban redesign

    Zsilincsar, Walter

    2018-01-01

    The phenomenon of urban blight dates back to the 19th century when industrialisation starting in Europe and North America initiated an uncontrolled urban growth in combination with strong demand in cheap an quickly constructed housing. Ghettoisation of mainly the working-class population and other “marginal groups” were the consequence together with a constant decay of single buildings, whole blocks and quarters. These general aspects of urban blight with its additional facettes or aspects re...

  10. Barrier cell sheath formation

    Kesner, J.

    1980-04-01

    The solution for electrostatic potential within a simply modeled tandem mirror thermal barrier is seen to exhibit a sheath at each edge of the cell. The formation of the sheath requires ion collisionality and the analysis assmes that the collisional trapping rate into the barrier is considerably slower than the barrier pump rate

  11. Engineering of Bacteriophages Y2::dpoL1-C and Y2::luxAB for Efficient Control and Rapid Detection of the Fire Blight Pathogen, Erwinia amylovora.

    Born, Yannick; Fieseler, Lars; Thöny, Valentin; Leimer, Nadja; Duffy, Brion; Loessner, Martin J

    2017-06-15

    Erwinia amylovora is the causative agent of fire blight, a devastating plant disease affecting members of the Rosaceae Alternatives to antibiotics for control of fire blight symptoms and outbreaks are highly desirable, due to increasing drug resistance and tight regulatory restrictions. Moreover, the available diagnostic methods either lack sensitivity, lack speed, or are unable to discriminate between live and dead bacteria. Owing to their extreme biological specificity, bacteriophages are promising alternatives for both aims. In this study, the virulent broad-host-range E. amylovora virus Y2 was engineered to enhance its killing activity and for use as a luciferase reporter phage, respectively. Toward these aims, a depolymerase gene of E. amylovora virus L1 ( dpoL1-C ) or a bacterial luxAB fusion was introduced into the genome of Y2 by homologous recombination. The genes were placed downstream of the major capsid protein orf68 , under the control of the native promoter. The modifications did not affect viability of infectivity of the recombinant viruses. Phage Y2:: dpoL1-C demonstrated synergistic activity between the depolymerase degrading the exopolysaccharide capsule and phage infection, which greatly enhanced bacterial killing. It also significantly reduced the ability of E. amylovora to colonize the surface of detached flowers. The reporter phage Y2:: luxAB transduced bacterial luciferase into host cells and induced synthesis of large amounts of a LuxAB luciferase fusion. After the addition of aldehyde substrate, bioluminescence could be readily monitored, and this enabled rapid and specific detection of low numbers of viable bacteria, without enrichment, both in vitro and in plant material. IMPORTANCE Fire blight, caused by Erwinia amylovora , is the major threat to global pome fruit production, with high economic losses every year. Bacteriophages represent promising alternatives to not only control the disease, but also for rapid diagnostics. To enhance

  12. Fusarium species as pathogen on orchids.

    Srivastava, Shikha; Kadooka, Chris; Uchida, Janice Y

    2018-03-01

    The recent surge in demand for exotic ornamental crops such as orchids has led to a rise in international production, and a sharp increase in the number of plant and plant products moving between countries. Along with the plants, diseases are also being transported and introduced into new areas. Fusarium is one of the major diseases causing pathogens infecting orchids that is spreading through international trade. Studies have identified several species of Fusarium associated with orchids, some are pathogenic and cause symptoms such as leaf and flower spots, leaf or sheath blights, pseudostem or root rots, and wilts. Infection and damage caused by Fusarium reduces the quality of plants and flowers, and can cause severe economic losses. This review documents the current status of the Fusarium-orchid interaction, and illustrates challenges and future perspectives based on the available literature. This review is the first of Fusarium and orchid interactions, and integrates diverse results that both furthers the understanding and knowledge of this disease complex, and will enable the development of effective disease management practices. Copyright © 2017 Elsevier GmbH. All rights reserved.

  13. Occurrence of Leaf Blight on Cosmos Caused by Alternaria cosmosa in Korea

    Jian Xin Deng

    2015-03-01

    Full Text Available In 2011, a leaf blight disease was observed on cosmos (Cosmos bipinnatus leaves in Nonsan, Korea. The causal pathogen was isolated and identified based on morphological and molecular approaches. Morphological characteristics of the pathogen matched well with the Alternaria cosmosa and also easily distinguishable from Alternaria zinniae reported from cosmos seeds by producing branched beak. Phylogenetically, the pathogen could not be distinguished from A. passiflorae based on the sequence analysis of a combined data set of Alt a1 and gpd genes. However, A. passiflorae was distinguished from the present species by having conidiophores with 4 to 5 conidiogenous loci. The results indicate that the present Alternaria species is A. cosmosa. Pathogenicity tests revealed that the isolate was pathogenic to the leaves of Cosmos bipinnatus. This is the first report of Alternaria blight disease caused by A. cosmosa on cosmos in Korea.

  14. Novel species of Botryosphaeriaceae associated with shoot blight of pistachio.

    Chen, ShuaiFei; Li, GuoQing; Liu, FeiFei; Michailides, Themis J

    2015-01-01

    Various species of phytopathogenic Botryosphaeriaceae were identified previously from pistachio trees worldwide. Disease symptoms caused by pathogens in Botryosphaeriaceae on pistachio include panicle and shoot blight, leaf defoliation, fruit discoloration and decay. In this study species of Botryosphaeriaceae were collected from blighted pistachio shoots in Arizona, USA, and Greece. The aims of this study were to identify these Botryosphaeriaceae isolates and to test their pathogenicity to pistachio. The fungi were identified based on comparisons of DNA sequence data of the nuclear rDNA internal transcribed spacer region (ITS), a partial translation elongation factor 1-alpha gene (TEF1), a partial β-tubulin gene (TUB2) and morphological characteristics. Results indicated that some isolates collected from pistachio represent two previously undescribed species, which we described here as Lasiodiplodia americana sp. nov. from the United States and Neofusicoccum hellenicum sp. nov. from Greece. Field inoculations of L. americana and N. hellenicum on branches of four pistachio cultivars showed that both L. americana and N. hellenicum are pathogenic on pistachio. The four pistachio cultivars differed in their susceptibility to the Botryosphaeriaceae species. Results of this study suggested that the two new species of Botryosphaeriaceae need to be monitored carefully to determine the distribution of these pathogens and the possible spread to other areas. © 2015 by The Mycological Society of America.

  15. Debate on the Exploitation of Natural Plant Diversity to Create Late Blight Resistance in Potato

    Goverse, A.; Struik, P.C.

    2009-01-01

    This paper reports on a debate on intriguing propositions relating to the scientific, agronomic, societal and economic impact of the BIOEXPLOIT project, focusing on late blight resistance in potato. It discusses (i) whether identifying pathogen effectors will facilitate selecting durable R genes,

  16. First record of Glomerella cingulata causing leaf blight on Talauma ovata (Magnoliaceae)

    Vieira,Bruno Sérgio; Pereira,Olinto Liparini; Batista,Márcio Luiz; Barreto,Robert Weingart

    2005-01-01

    Glomerella cingulata was found causing severe leaf blight on Talauma ovata, a common tree species in the Atlantic tropical rain forest floodplains of Southern Brazil. The disease and pathogen are described and illustrated and patogenicity is also demonstrated. This is the first report of this disease.

  17. R gene stacking by trans- and cisgenesis to achieve durable late blight resistance in potato

    Zhu, S.

    2014-01-01

    Among the many diseases of potato (Solanum tuberosum L.), which is the third food crop in the world after wheat and rice, late blight caused by the oomycete pathogen Phytophthora infestans, is one of the most serious diseases. In the last century, major resistance (R)

  18. Controlled release of Pantoea agglomerans E325 for biocontrol of fire blight

    Microencapsulation and controlled release of Pantoea agglomerans strain E325 (E325), which is an antagonist to bacterial pathogen (Erwinia amylovora) of fire blight, a devastating disease of apple and pear, have been investigated. Uniform core-shell alginate microcapsules (AMCs), 60-300 µm in diamet...

  19. Comparative genome analysis of rice-pathogenic Burkholderia provides insight into capacity to adapt to different environments and hosts.

    Seo, Young-Su; Lim, Jae Yun; Park, Jungwook; Kim, Sunyoung; Lee, Hyun-Hee; Cheong, Hoon; Kim, Sang-Mok; Moon, Jae Sun; Hwang, Ingyu

    2015-05-06

    In addition to human and animal diseases, bacteria of the genus Burkholderia can cause plant diseases. The representative species of rice-pathogenic Burkholderia are Burkholderia glumae, B. gladioli, and B. plantarii, which primarily cause grain rot, sheath rot, and seedling blight, respectively, resulting in severe reductions in rice production. Though Burkholderia rice pathogens cause problems in rice-growing countries, comprehensive studies of these rice-pathogenic species aiming to control Burkholderia-mediated diseases are only in the early stages. We first sequenced the complete genome of B. plantarii ATCC 43733T. Second, we conducted comparative analysis of the newly sequenced B. plantarii ATCC 43733T genome with eleven complete or draft genomes of B. glumae and B. gladioli strains. Furthermore, we compared the genome of three rice Burkholderia pathogens with those of other Burkholderia species such as those found in environmental habitats and those known as animal/human pathogens. These B. glumae, B. gladioli, and B. plantarii strains have unique genes involved in toxoflavin or tropolone toxin production and the clustered regularly interspaced short palindromic repeats (CRISPR)-mediated bacterial immune system. Although the genome of B. plantarii ATCC 43733T has many common features with those of B. glumae and B. gladioli, this B. plantarii strain has several unique features, including quorum sensing and CRISPR/CRISPR-associated protein (Cas) systems. The complete genome sequence of B. plantarii ATCC 43733T and publicly available genomes of B. glumae BGR1 and B. gladioli BSR3 enabled comprehensive comparative genome analyses among three rice-pathogenic Burkholderia species responsible for tissue rotting and seedling blight. Our results suggest that B. glumae has evolved rapidly, or has undergone rapid genome rearrangements or deletions, in response to the hosts. It also, clarifies the unique features of rice pathogenic Burkholderia species relative to other

  20. Neofusicoccum ribis Associated with Leaf Blight on Rubber (Hevea brasiliensis in Peninsular Malaysia

    A. I. C. Nyaka Ngobisa

    2013-03-01

    Full Text Available Hevea brasiliensis is a natural source of rubber and an important plantation tree species in Malaysia. Leaf blight disease caused by Fusicoccum substantially reduces the growth and performance of H. brasiliensis. The aim of this study was to use a combination of both morphological characteristics and molecular data to clarify the taxonomic position of the fungus associated with leaf blight disease. Fusicoccum species were isolated from infected leaves collected from plantations at 3 widely separated locations – Selangor, Perak, and Johor states – in Peninsular Malaysia in 2010. All the isolates were identified according to their conidial patterns and DNA sequences generated from internal transcribed spacers (ITS1 and ITS2, the 5.8S rRNA, and an unknown locus (BotF15 containing microsatellite repeats. Based on taxonomic and sequence data, Neofusicoccum ribis was identified as the main cause of leaf blight disease in H. brasiliensis in commercial plantations in Malaysia. A pathogenicity trial on detached leaves further confirmed that N. ribis causes leaf blight disease. N. ribis is an important leaf pathogen, and its detection in Malaysia has important implications for future planting of H. brasiliensis.

  1. Preservation methods for isolates of ascochyta blight fungi

    Joanna Marcinkowska

    2014-08-01

    Full Text Available Isolates of ascochyta blight fungi, two of Ascochyta pisi, four of Mycosphaerella pinodes and four of Phoma pinodella were stored: A - on slants under mineral oil, B - on CN's medium agar disks, and as conidial suspension: C - in glycerine, D · in water. Viability and pathogenicity of recovered cultures after each consecutive year were assesed from 1991 to 1999. The compared parameters were first of all strongly influenced by the preservation method, but fungus species and number of years had a minor importance. The best for longer storage was method "A" because after 9 years the isolates were viable, highly pathogenic, and cultures recovered from them were clean. Thc method "C'' is good for short keeping (2-3 years, as conidia in vials need only small space and gave clean cultures.

  2. Stability of the plasma sheath

    Franklin, R.N.

    1979-12-01

    The stability of a collisionless sheath joined to a plasma in the presence of secondary emission of electrons from the sheath boundary is examined in the fluid approximation. Instability is unlikely to occur under floating conditions but if significant currents flow corresponding to increased wall-plasma potentials the system can go unstable. (author)

  3. Role of temperature and free moisture in onion flower blight. [Botrytis squamosa; Botrytis cinerea; and Botrytis allii

    Ramsey, G.R.; Lorbeer, J.W.

    1986-06-01

    The cardinal temperatures at which onion umbels were blighted (after inoculation when two-thirds of the florets were open) with Botrytis squamosa, B. cinerea, and B. allii (isolated from blighted onion florets) were near 9, 21, and 27 C for B. squamosa, near 12, 21, and 30 C for B. cinerea, and near 9, 24, and 30 C for B. allii. The cardinal temperatures for mycelial growth (potato-dextrose agar) of B. squamosa, B. cinerea, and B. allii were near 5, 22, and 30 C for each fungus. The cardinal temperatures for conidial germination (on purified water agar) were near 6, 15, and 30 C for B. squamosa; 3, 18, and 33 C for B. cinerea; and 6, 24, and 33 C for B. allii. When the duration of free moisture on umbels after inoculation with the three pathogens was increased from 0 to 96 hr. the percentages of unopened florets, open florets, and immature seed capsules blighted at 21 C were increased significantly. Free moisture durations of 12-24, 6-12, and 6-12 hr were necessary for blighting of unopen florets, open florets, and immature seed capsules, respectively, by each pathogen at 21 C. A positive correlation between the amount of July rainfall and the natural incidence of onion flower blight was observed in Orange County, New York, from 1976 to 1981. 10 references, 2 figures, 1 table.

  4. Genomic analysis of Bacillus subtilis OH 131.1 and coculturing with Cryptococcus flavescens for control of fusarium head blight

    Bacillus subtilis OH131.1 is a bacterial antagonist of Fusarium graminearum, a plant pathogen which causes Fusarium head blight in wheat. The genome of B. subtilis OH131.1 was sequenced, annotated and analyzed to understand its potential to produce bioactive metabolites. The analysis identified 6 sy...

  5. Chitosan-induced immunity in Camellia sinensis (L.) O. Kuntze against blister blight disease is mediated by nitric-oxide.

    Chandra, Swarnendu; Chakraborty, Nilanjan; Panda, Koustubh; Acharya, Krishnendu

    2017-06-01

    Blister blight disease, caused by an obligate biotrophic fungal pathogen, Exobasidium vexans Massee is posing a serious threat for tea cultivation in Asia. As the use of chemical pesticides on tea leaves substantially increases the toxic risks of tea consumption, serious attempts are being made to control such pathogens by boosting the intrinsic natural defense responses against invading pathogens in tea plants. In this study, the nature and durability of resistance offered by chitosan and the possible mechanism of chitosan-induced defense induction in Camellia sinensis (L.) O. Kuntze plants against blister blight disease were investigated. Foliar application of 0.01% chitosan solution at 15 days interval not only reduced the blister blight incidence for two seasons, but also maintained the induced expressions of different defense related enzymes and total phenol content compared to the control. Defense responses induced by chitosan were found to be down regulated under nitric oxide (NO) deficient conditions in vivo, indicating that the observed chitosan-induced resistance is probably activated via NO signaling. Such role of NO in host defense response was further established by application of the NO donor, sodium nitroprusside (SNP), which produced similar defense responses accomplished through chitosan treatment. Taken together, our results suggest that increased production of NO in chitosan-treated tea plants may play a critical role in triggering the innate defense responses effective against plant pathogens, including that causing the blister blight disease. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

  6. Discovery and characterization of the major late blight resistance complex in potato: genomic structure, functional diversity, and implications

    Huang, S.

    2005-01-01

    Potato is the most important non-cereal crop in the world. Late blight, caused by the oomycete pathogen Phytophthora infestans, is the most devastating disease of potato. In the mid-191h century, P. infestans attacked the European potato fields and this resulted in a widespread famine in Ireland.

  7. Rootstock-regulated gene expression patterns associated with fire blight resistance in apple

    Jensen Philip J

    2012-01-01

    Full Text Available Abstract Background Desirable apple varieties are clonally propagated by grafting vegetative scions onto rootstocks. Rootstocks influence many phenotypic traits of the scion, including resistance to pathogens such as Erwinia amylovora, which causes fire blight, the most serious bacterial disease of apple. The purpose of the present study was to quantify rootstock-mediated differences in scion fire blight susceptibility and to identify transcripts in the scion whose expression levels correlated with this response. Results Rootstock influence on scion fire blight resistance was quantified by inoculating three-year old, orchard-grown apple trees, consisting of 'Gala' scions grafted to a range of rootstocks, with E. amylovora. Disease severity was measured by the extent of shoot necrosis over time. 'Gala' scions grafted to G.30 or MM.111 rootstocks showed the lowest rates of necrosis, while 'Gala' on M.27 and B.9 showed the highest rates of necrosis. 'Gala' scions on M.7, S.4 or M.9F56 had intermediate necrosis rates. Using an apple DNA microarray representing 55,230 unique transcripts, gene expression patterns were compared in healthy, un-inoculated, greenhouse-grown 'Gala' scions on the same series of rootstocks. We identified 690 transcripts whose steady-state expression levels correlated with the degree of fire blight susceptibility of the scion/rootstock combinations. Transcripts known to be differentially expressed during E. amylovora infection were disproportionately represented among these transcripts. A second-generation apple microarray representing 26,000 transcripts was developed and was used to test these correlations in an orchard-grown population of trees segregating for fire blight resistance. Of the 690 transcripts originally identified using the first-generation array, 39 had expression levels that correlated with fire blight resistance in the breeding population. Conclusions Rootstocks had significant effects on the fire blight

  8. TWIG BLIGHT AND DEFOLIATION CAUSED BY Colletotrichum horii IN PERSIMMONS IN BRAZIL

    LOUISE LARISSA MAY DE MIO

    2015-03-01

    Full Text Available Persimmon anthracnose has been a great concern to Brazilian producers. This study aimed to identify and characterized the causal species from Brazilian persimmons byassessing morphological and molecular characteristics and pathogenicity tests. Five fungal isolatesobtained from diseased twigs and fruits were identified as Colletotrichum horii, based on morphologicalcharacteristics and nucleotide sequences of ITS region. Inoculation tests revealed that the fungal isolates caused necrotic spots followed by defoliation of leaves, blight of twigs and buds of potted persimmon plants.

  9. Potato agriculture, late blight science, and the molecularization of plant pathology.

    Turner, R Steven

    2008-01-01

    By the mid-1980s nucleic-acid based methods were penetrating the farthest reaches of biological science, triggering rivalries among practitioners, altering relationships among subfields, and transforming the research front. This article delivers a "bottom up" analysis of that transformation at work in one important area of biological science, plant pathology, by tracing the "molecularization" of efforts to understand and control one notorious plant disease -- the late blight of potatoes. It mobilizes the research literature of late blight science as a tool through which to trace the changing typography of the research front from 1983 to 2003. During these years molecularization intensified the traditional fragmentation of the late blight research community, even as it dramatically integrated study of the causal organism into broader areas of biology. In these decades the pathogen responsible for late blight, the oomycete "Phytophthora infestans," was discovered to be undergoing massive, frightening, and still largely unexplained genetic diversification -- a circumstance that lends the episode examined here an urgency that reinforces its historiographical significance as a case-study in the molecularization of the biological sciences.

  10. Efficacy of different fungicides against Rhizoctonia brown patch and Pythium blight on turfgrass in Italy.

    Mocioni, M; Titone, P; Garibaldi, A; Gullino, M L

    2003-01-01

    Brown patch, incited by Rhizoctonia solani Kuhn, and Pythium blight, caused by Pythium spp. are two of the diseases most frequently observed on turfgrass in high maintenance stands, as on golf courses. In such conditions the control strategies, based on chemicals, are particularly difficult due to the scarcity of fungicides registered for turf in Italy. The results obtained in experimental trials carried out to evaluate the efficacy of chemical and biological products against brown patch and Pythium blight are reported. On mature turfgrass, maintained under fairway conditions, azoxystrobin, and trifoxystrobin, not yet registered on turf, were very effective against brown patch. Tebuconazole, applied in three different formulations, was very effective against R. solani, while Trichoderma spp. and azadiractine did not control the pathogen. In greenhouse conditions on Agrostis stolonifera, in the presence of severe disease incidence, due to artificial inoculation, benalaxyl-M satisfactorily controlled Pythium blight; Trichoderma spp. as well as a commercial formulation of T. harzianum, applied one week before the inoculation, were not effective. Among the fungicides not yet registered for use on turfgrass in Italy, metalaxyl-M + mancozeb was effective against Pythium blight.

  11. Some fungal endophytes from vegetable crops and their anti-oomycete activities against tomato late blight.

    Kim, H-Y; Choi, G J; Lee, H B; Lee, S-W; Lim, H K; Jang, K S; Son, S W; Lee, S O; Cho, K Y; Sung, N D; Kim, J-C

    2007-03-01

    To isolate endophytic fungi from vegetable plants and examine their in vivo anti-oomycete activity against Phytophthora infestans in tomato plants. Endophytic fungi were isolated from surface-sterilized plant tissues and anti-oomycete activity was measured by in vivo assay using tomato seedlings. Endophytic fungi showing potent anti-oomycete activity were identified by morphological characteristics and nuclear ribosomal ITS1-5.8S-ITS2 sequence analysis. A total of 152 isolates were obtained from 66 healthy tissue samples of cucumber, red pepper, tomato, pumpkin and Chinese cabbage and the fermentation broths of 23 isolates showed potent in vivo anti-oomycete activity against tomato late blight with control values over 90%. The Fusarium oxysporum strain EF119, which was isolated from roots of red pepper, showed the most potent disease control efficacy against tomato late blight. In dual-culture tests, it inhibited the growth of Pythium ultimum, P. infestans and Phytophthora capsici. Among endophytic fungi isolated from healthy tissues of vegetable plants, F. oxysporum EF119 showed the most potent in vivo anti-oomycete activity against tomato late blight and in vitro anti-oomycete activity against several oomycete pathogens. Endophytic fungi showing anti-oomycete activity in vitro and in vivo may be used as biocontrol agents particularly of tomato late blight.

  12. Validation of a tuber blight (Phytophthora infestans) prediction model

    Potato tuber blight caused by Phytophthora infestans accounts for significant losses in storage. There is limited published quantitative data on predicting tuber blight. We validated a tuber blight prediction model developed in New York with cultivars Allegany, NY 101, and Katahdin using independent...

  13. The electrostatic cylindrical sheath in a plasma

    Wang Chunhua; Sun Xiaoxia; Bai Dongxue

    2004-01-01

    The electrostatic sheath with a cylindrical geometry in an ion-electron plasma is investigated. Assuming a Boltzmann response to electrons and cold ions with bulk flow, it is shown that the radius of the cylindrical geometry do not affect the sheath potential significantly. The authors also found that the sheath potential profile is steeper in the cylindrical sheath compared to the slab sheath. The distinct feature of the cylindrical sheath is that the ion density distribution is not monotonous. The sheath region can be divided into three regions, two ascendant regions and one descendant region. (author)

  14. Anode sheath in Hall thrusters

    Dorf, L.; Semenov, V.; Raitses, Y.

    2003-01-01

    A set of hydrodynamic equations is used to describe quasineutral plasma in ionization and acceleration regions of a Hall thruster. The electron distribution function and Poisson equation are invoked for description of a near-anode region. Numerical solutions suggest that steady-state operation of a Hall thruster can be achieved at different anode sheath regimes. It is shown that the anode sheath depends on the thruster operating conditions, namely the discharge voltage and the mass flow rate

  15. Structural Conservation of the Myoviridae Phage Tail Sheath Protein Fold

    Aksyuk, Anastasia A.; Kurochkina, Lidia P.; Fokine, Andrei; Forouhar, Farhad; Mesyanzhinov, Vadim V.; Tong, Liang; Rossmann, Michael G. (SOIBC); (Purdue); (Columbia)

    2012-02-21

    Bacteriophage phiKZ is a giant phage that infects Pseudomonas aeruginosa, a human pathogen. The phiKZ virion consists of a 1450 {angstrom} diameter icosahedral head and a 2000 {angstrom}-long contractile tail. The structure of the whole virus was previously reported, showing that its tail organization in the extended state is similar to the well-studied Myovirus bacteriophage T4 tail. The crystal structure of a tail sheath protein fragment of phiKZ was determined to 2.4 {angstrom} resolution. Furthermore, crystal structures of two prophage tail sheath proteins were determined to 1.9 and 3.3 {angstrom} resolution. Despite low sequence identity between these proteins, all of these structures have a similar fold. The crystal structure of the phiKZ tail sheath protein has been fitted into cryo-electron-microscopy reconstructions of the extended tail sheath and of a polysheath. The structural rearrangement of the phiKZ tail sheath contraction was found to be similar to that of phage T4.

  16. Sheath waves, non collisional dampings

    Marec, Jean Lucien Ernest

    1974-01-01

    When a metallic conductor is inserted into an ionised gas, an area of electron depletion is formed between the conductor and the plasma: the ionic sheath. Moreover, if the conductor is excited by an electric field, this ionic sheath plays an important role with respect to microwave properties. In this research thesis, the author addresses the range of frequencies smaller than the plasma frequency, and reports the study of resonance phenomena. After a presentation of the problem through a bibliographical study, the author recalls general characteristics of sheath wave propagation and of sheath resonances, and discusses the validity of different hypotheses (for example and among others, electrostatic approximations, cold plasma). Then, the author more particularly addresses theoretical problems related to non collisional dampings: brief bibliographical study, detailed presentation and description of the theoretical model, damping calculation methods. The author then justifies the design and performance of an experiment, indicates measurement methods used to determine plasma characteristics as well as other magnitudes which allow the description of mechanisms of propagation and damping of sheath waves. Experimental results are finally presented with respect to various parameters. The author discusses to which extent the chosen theoretical model is satisfying [fr

  17. Self-consistent radial sheath

    Hazeltine, R.D.

    1988-12-01

    The boundary layer arising in the radial vicinity of a tokamak limiter is examined, with special reference to the TEXT tokamak. It is shown that sheath structure depends upon the self-consistent effects of ion guiding-center orbit modification, as well as the radial variation of E /times/ B-induced toroidal rotation. Reasonable agreement with experiment is obtained from an idealized model which, however simplified, preserves such self-consistent effects. It is argued that the radial sheath, which occurs whenever confining magnetic field-lines lie in the plasma boundary surface, is an object of some intrinsic interest. It differs from the more familiar axial sheath because magnetized charges respond very differently to parallel and perpendicular electric fields. 11 refs., 1 fig

  18. Intrapontine malignant nerve sheath tumor

    Kozić, Dusko; Nagulić, Mirjana; Samardzić, Miroslav

    2008-01-01

    . On pathological examination, the neoplasm appeared to be an intrapontine nerve sheath tumor originating most likely from the intrapontine segment of one of the cranial nerve fibres. The tumor showed exophytic growth, with consequent spread to adjacent subaracnoid space. MR spectroscopy revealed the presence......The primary source of malignant intracerebral nerve sheath tumors is still unclear We report the imaging and MR spectroscopic findings in a 39-year-old man with a very rare brain stem tumor MR examination revealed the presence of intraaxial brain stem tumor with a partial exophytic growth...

  19. Plasma sheath criterion in thermal electronegative plasmas

    Ghomi, Hamid; Khoramabadi, Mansour; Ghorannevis, Mahmod; Shukla, Padma Kant

    2010-01-01

    The sheath formation criterion in electronegative plasma is examined. By using a multifluid model, it is shown that in a collisional sheath there will be upper as well as lower limits for the sheath velocity criterion. However, the parameters of the negative ions only affect the lower limit.

  20. Pengaruh Penggunaan Fungisida Sintetis Dan Trichoderma SP. Secara Tunggal Atau Gabungan Terhadap Penyakit Hawar Pelepah Daun Padi Effect of Synthetic Fungicidal Application Alone or Mixed with Trichoderma SP. on Sheat Blight of Rice

    Susilo, Pambudi; Soesanto, Loekas; Wachjadi, Muljo

    2005-01-01

    This research aimed at knowing the application effect of synthetic fungicide tebuconazole 25% alone or mixed with Trichoderma sp. on sheath blight disease and rice yield. The research was carried out at the Plant Disease Laboratory and the experimental field, the Faculty of Agriculture, the University of Jenderal Soedirman. Split Plot Design was used with Trichoderma sp. as main factor consisted of without and with antagonistic Trichoderma sp. applied on rice at 15, 30, and 45 and 55 days aft...

  1. Melatonin Attenuates Potato Late Blight by Disrupting Cell Growth, Stress Tolerance, Fungicide Susceptibility and Homeostasis of Gene Expression in Phytophthora infestans

    Shumin Zhang

    2017-11-01

    Full Text Available Phytophthora infestans (P. infestans is the causal agent of potato late blight, which caused the devastating Irish Potato Famine during 1845-1852. Until now, potato late blight is still the most serious threat to potato growth and has caused significant economic losses worldwide. Melatonin can induce plant innate immunity against pathogen infection, but the direct effects of melatonin on plant pathogens are poorly understood. In this study, we investigated the direct effects of melatonin on P. infestans. Exogenous melatonin significantly attenuated the potato late blight by inhibiting mycelial growth, changing cell ultrastructure, and reducing stress tolerance of P. infestans. Notably, synergistic anti-fungal effects of melatonin with fungicides on P. infestans suggest that melatonin could reduce the dose levels and enhance the efficacy of fungicide against potato late blight. A transcriptome analysis was carried out to mine downstream genes whose expression levels were affected by melatonin. The analysis of the transcriptome suggests that 66 differentially expressed genes involved in amino acid metabolic processes were significantly affected by melatonin. Moreover, the differentially expressed genes associated with stress tolerance, fungicide resistance, and virulence were also affected. These findings contribute to a new understanding of the direct functions of the melatonin on P. infestans and provide a potential ecofriendly biocontrol approach using a melatonin-based paradigm and application to prevent potato late blight.

  2. Ion acceleration in the plasma source sheath

    Birdsall, C.K.

    1986-01-01

    This note is a calculation of the potential drop for a planar plasma source, across the source sheath, into a uniform plasma region defined by vector E = 0 and/or perhaps ∂ 2 PHI/∂ x 2 = 0. The calculation complements that of Bohm who obtained the potential drop at the other end of a plasma, at a planar collector sheath. The result is a relation between the source ion flux and the source sheath potential drop and the accompanying ion acceleration. This planar source sheath ion acceleration mechanism (or that from a distributed source) can provide the pre-collector-sheath ion acceleration as found necessary by Bohm. 3 refs

  3. An Update on Genetic Resistance of Chickpea to Ascochyta Blight

    Mamta Sharma

    2016-03-01

    Full Text Available Ascochyta blight (AB caused by Ascochyta rabiei (Pass. Labr. is an important and widespread disease of chickpea (Cicer arietinum L. worldwide. The disease is particularly severe under cool and humid weather conditions. Breeding for host resistance is an efficient means to combat this disease. In this paper, attempts have been made to summarize the progress made in identifying resistance sources, genetics and breeding for resistance, and genetic variation among the pathogen population. The search for resistance to AB in chickpea germplasm, breeding lines and land races using various screening methods has been updated. Importance of the genotype × environment (GE interaction in elucidating the aggressiveness among isolates from different locations and the identification of pathotypes and stable sources of resistance have also been discussed. Current and modern breeding programs for AB resistance based on crossing resistant/multiple resistant and high-yielding cultivars, stability of the breeding lines through multi-location testing and molecular marker-assisted selection method have been discussed. Gene pyramiding and the use of resistant genes present in wild relatives can be useful methods in the future. Identification of additional sources of resistance genes, good characterization of the host–pathogen system, and identification of molecular markers linked to resistance genes are suggested as the key areas for future study.

  4. Morphological, cultural, pathogenic and molecular variability ...

    Alternaria blight (Alternaria brassicae) causes severe foliar damage to Indian mustard in Uttarakhand. Ten (10) isolates of A. brassicae were collected from different hosts and characterized for cultural, morphological, pathogenic and molecular variations. A. brassicae colonies varied in their cultural behaviour ranging from ...

  5. Influence of day-length and isolates of Phytophthora infestans on field resistance to late blight of potato.

    Mihovilovich, E; Munive, S; Bonierbale, M

    2010-04-01

    Main and interaction effects of day-length and pathogen isolate on the reaction and expression of field resistance to Phytophthora infestans were analyzed in a sample of standard clones for partial resistance to potato late blight, and in the BCT mapping population derived from a backcross of Solanum berthaultii to Solanum tuberosum. Detached leaves from plants grown in field plots exposed to short- and long day-length conditions were independently inoculated with two P. infestans isolates and incubated in chambers under short- and long photoperiods, respectively. Lesion growth rate (LGR) was used for resistance assessment. Analysis of variance revealed a significant contribution of genotype x isolate x day-length interaction to variation in LGR indicating that field resistance of genotypes to foliar late blight under a given day-length depended on the infecting isolate. An allele segregating from S. berthaultii with opposite effects on foliar resistance to late blight under long- and short day-lengths, respectively, was identified at a quantitative trait locus (QTL) that mapped on chromosome 1. This allele was associated with positive (decreased resistance) and negative (increased resistance) additive effects on LGR, under short- and long day-length conditions, respectively. Disease progress on whole plants inoculated with the same isolate under field conditions validated the direction of its effect in short day-length regimes. The present study suggests the occurrence of an isolate-specific QTL that displays interaction with isolate behavior under contrasting environments, such as those with different day-lengths. This study highlights the importance of exposing genotypes to a highly variable population of the pathogen under contrasting environments when stability to late blight resistance is to be assessed or marker-assisted selection is attempted for the manipulation of quantitative resistance to late blight.

  6. Late Blight of Potato (Phytophthora infestans I: Fungicides Application and Associated Challenges

    Abdul Majeed

    2017-03-01

    Full Text Available Potato (Solanum tuberosum L. has been remained an important agricultural crop in resolving global food issues through decades. The crop has experienced enormous growth in terms of production throughout the world in recent decades because of improvement in agricultural mechanization, fertilizers application and irrigation practices. Nevertheless, a significant proportion of this valuable crop is still vulnerable to losses due to prevalence of different viral, bacterial, fungal and nematodes infestations. Late blight, caused by Phytophthora infestans (Mont. de Bary, is one of the most threatening pathogenic diseases which not only results in direct crop losses but also cause farmers to embrace huge monetary expenses for disease control and preventive measures. The disease is well known for notorious ‘Irish Famine’ which resulted in drop of Irish population by more than 20% as result of hunger and potato starvation. Globally, annual losses of crop and money spend on fungicides for late blight control exceeds one trillion US dollars. This paper reviews the significance of late blight of potato and controlling strategies adopted for minimizing yield losses incurred by this disease by the use of synthetic fungicides. Advantages and disadvantages of fungicides application are discussed.

  7. Genetics and Improvement of Bacterial Blight Resistance of Hybrid Rice in China

    ZHANG Qi

    2009-01-01

    Since 1980s, rice breeding for resistance to bacterial blight has been rapidly progressing in China. The gene Xa4 was mainly used in three-line indica hybrid and two-line hybrid rice. The disease has been 'quiet' for 20 years in China, yet in recent years it has gradually emerged and been prevalent in fields planted with newly released rice varieties in the Changjiang River valley. Under the circumstances, scientists inevitably raised several questions: what causes the resurgence and what should we do next? And/or is resistance breeding still one of the main objectives in rice improvement? Which approach do we take on resistance breeding so that the resistance will be more durable, and the resistance gene will be used more efficiently? A combined strategy involving traditional method, molecular marker-assisted selection, and transgenic technology should bring a new era to the bacterial blight resistance hybrid rice breeding program. This review also briefly discusses and deliberates on issues related to the broadening of bacterial blight resistance, and suitable utilization of resistance genes, alternate planting of available resistance genes; and understands the virulent populations of the bacterial pathogen in China even in Asia.

  8. Non-Maxwellian plasma sheaths

    Haines, M.G.

    1998-01-01

    There is much experimental evidence that heat flux to divertor plates or to limiters is very asymmetric. For example, Lowry made measurements on poloidal limiters in JET, Stangeby and McCracken reported asymmetries in several experiments. In 1991 Haines considered the effects on the Child-Langmuir sheaths of having a net current flow. It was found that a sheath that receives more ions than electrons receives more energy flux than a sheath that receives more electrons than ions. We now extend the model to include for the electrons departures from a Maxwellian distribution arising from a net current flow, heat flow and thermoelectric effects in the scrape-off layer (SOL). It is envisaged that a net current flows in the SOL due to applied or induced electric fields, and is of a magnitude similar to that in the adjacent bulk plasma, though reduced due to the lower temperature in the SOL. We employ conventional linear transport theory eg. Braginskii, Epperlein and Haines in which the ions are a stationary Maxwellian. (orig.)

  9. First report of shoot blight and dieback caused by Diplodia pinea on Pinus pinaster and P. radiata trees in Tunisia

    B.T. Linaldeddu

    2009-01-01

    Full Text Available Damage caused by Diplodia pinea on Pinus pinaster and P. radiata forests are reported for the fi rst time in Tunisia. The affected plants show shoot blight, canker and branch dieback. On decaying and dead branches pycnidia of D. pinea are observed. The fungus was repeatedly isolated from the bark of symptomatic branches. The results of pathogenicity tests confirm the virulence of D. pinea and the susceptibility of both Pinus species to infection.

  10. RF sheaths for arbitrary B field angles

    D'Ippolito, Daniel; Myra, James

    2014-10-01

    RF sheaths occur in tokamaks when ICRF waves encounter conducting boundaries and accelerate electrons out of the plasma. Sheath effects reduce the efficiency of ICRF heating, cause RF-specific impurity influxes from the edge plasma, and increase the plasma-facing component damage. The rf sheath potential is sensitive to the angle between the B field and the wall, the ion mobility and the ion magnetization. Here, we obtain a numerical solution of the non-neutral rf sheath and magnetic pre-sheath equations (for arbitrary values of these parameters) and attempt to infer the parametric dependences of the Child-Langmuir law. This extends previous work on the magnetized, immobile ion regime. An important question is how the rf sheath voltage distributes itself between sheath and pre-sheath for various B field angles. This will show how generally previous estimates of the rf sheath voltage and capacitance were reasonable, and to improve the RF sheath BC. Work supported by US DOE grants DE-FC02-05ER54823 and DE-FG02-97ER54392.

  11. Role of Solanum dulcamara L. in Potato Late Blight Epidemiology

    Golas, T.M.; Weerden, van der G.M.; Berg, van den R.G.; Mariani, C.; Allefs, J.J.H.M.

    2010-01-01

    Four sites with naturally growing Solanum dulcamara were surveyed during 2006 and 2007 for the presence of late blight. Despite 2 years of observations, no late blight was detected among natural populations of bittersweet. Nevertheless, repeated infections occurred on few S. dulcamara plants from a

  12. Epidemiology and integrated control of potato late blight in Europe

    Cooke, L R; Schepers, H T A M; Hermansen, A

    2011-01-01

    tend not to be grown on a large scale. From the grower’s perspective, the savings in fungicide input that can be achieved with these varieties are not compensated by the higher (perceived) risk of blight. Fungicides play a crucial role in the integrated control of late blight. The spray strategies...

  13. Identification of bacterial blight resistance genes Xa4 in Pakistani ...

    SERVER

    2008-03-04

    Mar 4, 2008 ... Bacterial blight (BB) caused by Xanthomonas oryzae pv oryzae (Xoo) is a major biotic constraint in the irrigated rice belts. Genetic resistance is the most effective and economical control for bacterial blight. Molecular survey was conducted to identify the rice germplasm/lines for the presence of Xa4, a.

  14. Strategies to control late blight in potatoes in Europe

    Schepers, H.T.A.M.; Evenhuis, A.; Spits, H.G.

    2009-01-01

    In Europe an aggressive genetically diverse population of potato late blight is present which regularly causes problems in all potato growing regions. It is therefore of the utmost importance that blight is managed in an integrated way by combining a range of measures. Hygiene measures can keep the

  15. Reactions of some potato genotypes to late blight in Cameroon ...

    Reactions of some potato genotypes to late blight in Cameroon. D. K. Njualem, P. Demo, H. A. Mendoza, J. T. Koi, S. F. Nana. Abstract. Field experiments were conducted in Cameroon in 1995 and 1996 to evaluate reactions of different potato genotypes to late blight. There were significant differences among genotypes for ...

  16. Control of fire blight (Erwinia amylovora on apple trees with trunk-injected plant resistance inducers and antibiotics and assessment of induction of pathogenesis-related protein genes

    Srđan G. Aćimović

    2015-02-01

    Full Text Available Management of fire blight is complicated by limitations on use of antibiotics in agriculture, antibiotic resistance development, and limited efficacy of alternative control agents. Even though successful in control, preventive antibiotic sprays also affect non-target bacteria, aiding the selection for resistance which could ultimately be transferred to the pathogen Erwinia amylovora. Trunk injection is a target-precise pesticide delivery method that utilizes tree xylem to distribute injected compounds. Trunk injection could decrease antibiotic usage in the open environment and increase the effectiveness of compounds in fire blight control. In field experiments, after 1-2 apple tree injections of either streptomycin, potassium phosphites (PH or acibenzolar-S-methyl (ASM, significant reduction of blossom and shoot blight symptoms was observed compared to water- or non-injected control trees. Overall disease suppression with streptomycin was lower than typically observed following spray applications to flowers. Trunk injection of oxytetracycline resulted in excellent control of shoot blight severity, suggesting that injection is a superior delivery method for this antibiotic. Injection of both ASM and PH resulted in the significant induction of PR-1, PR-2 and PR-8 protein genes in apple leaves indicating induction of systemic acquired resistance (SAR under field conditions. The time separating SAR induction and fire blight symptom suppression indicated that various defensive compounds within the SAR response were synthesized and accumulated in the canopy. ASM and PH suppressed fire blight even after cessation of induced gene expression. With the development of injectable formulations and optimization of doses and injection schedules, the injection of protective compounds could serve as an effective option for fire blight control.

  17. Ultrasound diagnosis of rectus sheath hematoma

    Hwang, M. S.; Chang, J. C.; Rhee, C. B.

    1984-01-01

    6 cases of rectus sheath hematoma were correctly diagnosed by ultrasound. 2 cases had bilateral rectus sheath hematoma and 4 cases were unilateral. On ultrasound finding, relatively well defined oval or spindle like cystic mass situated in the area of rectus muscle on all cases. Ultrasound examination may give more definite diagnosis and extension rectus sheath hematoma and also helpful to follow up study of hematoma

  18. Tendon sheath fibroma in the thigh.

    Moretti, Vincent M; Ashana, Adedayo O; de la Cruz, Michael; Lackman, Richard D

    2012-04-01

    Tendon sheath fibromas are rare, benign soft tissue tumors that are predominantly found in the fingers, hands, and wrists of young adult men. This article describes a tendon sheath fibroma that developed in the thigh of a 70-year-old man, the only known tendon sheath fibroma to form in this location. Similar to tendon sheath fibromas that develop elsewhere, our patient's lesion presented as a painless, slow-growing soft tissue nodule. Physical examination revealed a firm, nontender mass with no other associated signs or symptoms. Although the imaging appearance of tendon sheath fibromas varies, our patient's lesion appeared dark on T1- and bright on T2-weighted magnetic resonance imaging. It was well marginated and enhanced with contrast.Histologically, tendon sheath fibromas are composed of dense fibrocollagenous stromas with scattered spindle-shaped fibroblasts and narrow slit-like vascular spaces. Most tendon sheath fibromas can be successfully removed by marginal excision, although 24% of lesions recur. No lesions have metastasized. Our patient's tendon sheath fibroma was removed by marginal excision, and the patient remained disease free 35 months postoperatively. Despite its rarity, tendon sheath fibroma should be included in the differential diagnosis of a thigh mass on physical examination or imaging, especially if it is painless, nontender, benign appearing, and present in men. Copyright 2012, SLACK Incorporated.

  19. Retroperitoneal and rectus sheath hematomas.

    Kasotakis, George

    2014-02-01

    The retroperitoneum is rich in vascular structures and can harbor large hematomas, traumatic or spontaneous. The management of retroperitoneal hematomas depends on the mechanism of injury and whether they are pulsatile/expanding. Rectus sheath hematomas are uncommon abdominal wall hematomas secondary to trauma to the epigastric arteries of the rectus muscle. The common risk factors include anticoagulation, strenuous exercise, coughing, coagulation disorders, and invasive procedures on/through the abdominal wall. The management is largely supportive, with the reversal of anticoagulation and transfusions; angioembolization may be necessary. Copyright © 2014 Elsevier Inc. All rights reserved.

  20. Putative resistance gene markers associated with quantitative trait loci for fire blight resistance in Malus ‘Robusta 5’ accessions

    2012-01-01

    Background Breeding of fire blight resistant scions and rootstocks is a goal of several international apple breeding programs, as options are limited for management of this destructive disease caused by the bacterial pathogen Erwinia amylovora. A broad, large-effect quantitative trait locus (QTL) for fire blight resistance has been reported on linkage group 3 of Malus ‘Robusta 5’. In this study we identified markers derived from putative fire blight resistance genes associated with the QTL by integrating further genetic mapping studies with bioinformatics analysis of transcript profiling data and genome sequence databases. Results When several defined E.amylovora strains were used to inoculate three progenies from international breeding programs, all with ‘Robusta 5’ as a common parent, two distinct QTLs were detected on linkage group 3, where only one had previously been mapped. In the New Zealand ‘Malling 9’ X ‘Robusta 5’ population inoculated with E. amylovora ICMP11176, the proximal QTL co-located with SNP markers derived from a leucine-rich repeat, receptor-like protein ( MxdRLP1) and a closely linked class 3 peroxidase gene. While the QTL detected in the German ‘Idared’ X ‘Robusta 5’ population inoculated with E. amylovora strains Ea222_JKI or ICMP11176 was approximately 6 cM distal to this, directly below a SNP marker derived from a heat shock 90 family protein gene ( HSP90). In the US ‘Otawa3’ X ‘Robusta5’ population inoculated with E. amylovora strains Ea273 or E2002a, the position of the LOD score peak on linkage group 3 was dependent upon the pathogen strains used for inoculation. One of the five MxdRLP1 alleles identified in fire blight resistant and susceptible cultivars was genetically associated with resistance and used to develop a high resolution melting PCR marker. A resistance QTL detected on linkage group 7 of the US population co-located with another HSP90 gene-family member and a WRKY transcription factor

  1. Control of plant defense mechanisms and fire blight pathogenesis through the regulation of 6-thioguanine biosynthesis in Erwinia amylovora.

    Coyne, Sébastien; Litomska, Agnieszka; Chizzali, Cornelia; Khalil, Mohammed N A; Richter, Klaus; Beerhues, Ludger; Hertweck, Christian

    2014-02-10

    Fire blight is a devastating disease of Rosaceae plants, such as apple and pear trees. It is characterized by necrosis of plant tissue, caused by the phytopathogenic bacterium Erwinia amylovora. The plant pathogen produces the well-known antimetabolite 6-thioguanine (6TG), which plays a key role in fire blight pathogenesis. Here we report that YcfR, a member of the LTTR family, is a major regulator of 6TG biosynthesis in E. amylovora. Inactivation of the regulator gene (ycfR) led to dramatically decreased 6TG production. Infection assays with apple plants (Malus domestica cultivar Holsteiner Cox) and cell cultures of Sorbus aucuparia (mountain ash, rowan) revealed abortive fire blight pathogenesis and reduced plant response (biphenyl and dibenzofuran phytoalexin production). In the presence of the ΔycfR mutant, apple trees were capable of activating the abscission machinery to remove infected tissue. In addition to unveiling the regulation of 6TG biosynthesis in a major plant pathogen, we demonstrate for the first time that this antimetabolite plays a pivotal role in dysregulating the plant response to infection. Copyright © 2014 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  2. [Polyvalence of bacteriophages isolated from fruit trees, affected by bacterial fire blight].

    Tovkach, F I; Moroz, S N; Korol', N A; Faĭdiuk, Iu V; Kushkina, A I

    2013-01-01

    Phage populations appearing as a result of a pathogenic process caused by Erwinia amylovora have been discovered and described. They accompany bacterial fire blight development in the process of quince, pear and apple trees vegetation in Zakarpattya region of Ukraine. Phage isolates of the affected pear and quince include polyvalent virulent phages able to develop on bacterial strains associated with plants--E. amylovora. E. "horticola" and Pantoea agglomerans. E. amylovora isolated from the plant tissues affected by the fire blight and detected at the same time as phages proved to be resistant to the viral infection. It is hard to explain now this characteristic however it was noticed that resistance to phages can change drastically in case of dissociation, lysogenization and mutagenesis of erwinia in laboratory conditions. Phage population study shows that they are heterogeneous and can obviously include not only polyvalent but also specific viruses. Further studies of biology and molecular genetics of pure lines of isolated phages will help to get closer to understanding the place and role of bacteriophages in the complicated network of relations between bacterial pathogens and plants.

  3. Biocontrol Activity of Myxococcus sp. KYC 1126 against Phytophthora Blight on Hot Pepper

    Sung Chul Yun

    2011-08-01

    Full Text Available Bacteriolytic myxobacteria have been known to secrete various antifungal metabolites against several soilborne phytopathogens including Phytophthora. Among the three isolates of Myxococcus spp., KYC 1126 and KYC 1136 perfectly inhibited the mycelial growth of Phytophtora capsici in vitro. In order to show the biocontrol activity on Phytophthora blight of hot pepper, we tried to find the best way of application of myxobacterial isolate. Although KYC 1126 fruiting body was easily grown on the colony of Escherichia coli as a nutrient source, it did not control the disease when it was pre-applied in soil. Before the bioassay of a liquid culture filtrate of KYC 1126 was conducted, its antifungal activity was confirmed on the seedlings applying with the mixture of the pathogen`s zoospore suspension and KYC 1126 filtrate. On greenhouse experiments with five and four replications, the control value of KYC 1126 on phyllosphere and rhizosphere was 88% and 36%, respectively. Whereas, the control value of dimetnomorph+propineb on phyllosphere was 100% and that of propamorcarb on rhizosphere was 44%. There was a phytotoxicity of the myxobacterial filtrate when seedlings were washed and soaked for 24 hours. Gummy materials were covered with roots. And stem and petiole were constricted, then a whole seedling was eventually blighted.

  4. SH1 leaf rust and bacterial halo blight coffee resistances are genetically independent

    Lucas Mateus Rivero Rodrigues

    Full Text Available ABSTRACT Coffee resistance to Pseudomonas syringae pv. garcae has been associated to pleiotropic effect of SH1 allele, present in coffee plants resistant to certain races of Hemileia vastatrix, the causal agent of leaf rust, or genetic linkage between resistance alleles to both pathogens. To validate this hypothesis, 63 coffee plants in F2 generation were evaluated for resistance to 2 isolates of H. vastatrix carriers of alleles, respectively, v2, v5 (isolate I/2015 and v1; v2; v5 (isolate II/2015 with the objective to confirm presence of SH1 allele in resistant plants to isolate I/2015. The same coffee plants were evaluated for resistance to a mixture of P. syringae pv. garcae strains highly pathogenic to coffee. Results showed that, among F2 coffee allele SH1 carriers, resistant to isolate I/2015, resistant and susceptible plants to bacterial halo blight were found; the same segregation occurs between F2 homozygous for SH1 allele, susceptible to the same isolate (I/2015 of H. vastatrix. Results also indicate that there is no pleiotropic effect of gene or allele SH1 connection between genes conferring resistance to leaf rust caused by H. vastatrix and bacterial halo blight caused by P. syringae pv. garcae.

  5. Xanthomonas oryzae pv oryzae the Causal Agent of Bacterial Leaf Blight of rice: Isolation, Characterization, and Study of Transposon Mutagenesis

    Abdjad Asih Nawangsih

    2011-04-01

    Full Text Available Xanthomonas oryzae pv oryzae the Causal Agent of Bacterial Leaf Blight of rice: Isolation, Characterization, and Study of Transposon Mutagenesis. X. oryzae pv. oryzae (Xoo causes bacterial leaf blight (BLB of rice (Oryza sativa L., a major disease that constrains production of the staple crop in many countries of the world. Identification of X. oryzae pv. oryzae (Xoo was conducted based on the disease symptoms, pathogenicity, morphological, physiological, and genetic characteristics of bacterial cultures isolated from the infected plants. Fifty bacterial isolates predicted as Xoo have been successfully isolated. They are aerobic, rod shaped, and Gram negative bacteria. The isolates were evaluated for their hypersensitivity in tobacco and pathogenicity in rice plant. Fifty isolates induced hypersensitive reaction in tobacco and showed pathogenicity symptom in rice in different length. Based on physiological test, hypersensitivity and pathogenicity reactions, three bacterial isolates strongly predicted as Xoo, i.e. STG21, STG42, and STG46, were non indole formation, non pigment fluorescent, hydrolyzed casein, catalase activity positive, but negative oxidase. Partial sequencing of 16S rRNA genes of STG21 and STG42 showed 80% and 82% homology with X. oryzae, respectively, while STG46 showed 84% homology with X. campestris. Mini-Tn5 transposon mutagenesis of STG21 generated one of the mutants (M5 lossed it’s ability to induce hypersensitive reaction in tobacco plant and deficient in pathogenicity on rice. The lesion length of rice leaf caused by the mutant M5 decreased up to 80%.

  6. Burkholderia glumae: next major pathogen of rice?

    Ham, Jong Hyun; Melanson, Rebecca A; Rush, Milton C

    2011-05-01

    Burkholderia glumae causes bacterial panicle blight of rice, which is an increasingly important disease problem in global rice production. Toxoflavin and lipase are known to be major virulence factors of this pathogen, and their production is dependent on the TofI/TofR quorum-sensing system, which is mediated by N-octanoyl homoserine lactone. Flagellar biogenesis and a type III secretion system are also required for full virulence of B. glumae. Bacterial panicle blight is thought to be caused by seed-borne B. glumae; however, its disease cycle is not fully understood. In spite of its economic importance, neither effective control measures for bacterial panicle blight nor rice varieties showing complete resistance to the disease are currently available. A better understanding of the molecular mechanisms underlying B. glumae virulence and of the rice defence mechanisms against the pathogen would lead to the development of better methods of disease control for bacterial panicle blight. Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia. Gram-negative, capsulated, motile, lophotrichous flagella, pectolytic. Aborted seed, empty grains as a result of failure of grain filling, brown spots on panicles, seedling rot. Seed sterilization, planting partially resistant lines (no completely resistant line is available). KNOWN VIRULENCE FACTORS: Toxoflavin, lipase, type III effectors. © 2010 LSU AGCENTER. MOLECULAR PLANT PATHOLOGY © 2010 BSPP AND BLACKWELL PUBLISHING LTD.

  7. Primary optic nerve sheath meningioma

    Jeremic, Branislav [International Atomic Energy Agency, Vienna (Austria); Pitz, Susanne (eds.) [University Eye Hospital, Mainz (Germany)

    2008-07-01

    Optic nerve sheath meningioma (ONSM) is a rare tumour. Cases are usually separated into primary ONSM, which arises either intraorbitally or, less commonly, intracanalicularly, and secondary ONSM, which arises intracranially and subsequently invades the optic canal and orbit. This is the first book to cover all important aspects of the diagnosis and treatment of primary ONSM. After a general introduction, individual chapters discuss the clinical presentation, clinical examination and diagnosis, imaging, and histology. Treatment options are then addressed in detail, with special emphasis on external beam radiation therapy, and in particular stereotactic fractionated radiation therapy. The latter has recently produced consistently good results and is now considered the emerging treatment of choice for the vast majority of patients with primary ONSM. This well-illustrated book will prove invaluable to all practitioners who encounter primary ONSM in their clinical work. (orig.)

  8. Renewal strategies and neighborhood participation on urban blight

    Ali Hosseini; Ahmad Pourahmad; Ali Taeeb; Milad Amini; Sara Behvandi

    2017-01-01

    Urban blight had its own rational and hierarchical function in the past. Nowadays it is featured with structural and functional shortage. Therefore, it has lost the capacity to meet the residents’ needs. Along with intensification of urban blight problems in cities, and downtowns in particular, which affects different aspects of urban life, many urban planners have shown special attention to such districts. Laleh-Zar neighborhood is an example of these neighborhoods, which on the one hand due...

  9. Three-dimensional analysis of antenna sheaths

    Myra, J.R.; D'Ippolito, D.A.; Ho, Y.L.

    1996-01-01

    The present work is motivated by the importance of r.f. sheaths in determining the antenna-plasma interaction and the sensitivity of the sheaths to the complicated three-dimensional structure of modern ion cyclotron range of frequency (ICRF) antennas. To analyze r.f. sheaths on the plasma facing regions of the launcher, we first calculate the contact points of the tokamak magnetic field lines on the surface of the antenna Faraday screen and nearby limiters for realistic three-dimensional magnetic flux surface and antenna geometries. Next, the r.f. voltage that can drive sheaths at the contact points is determined and used to assess the resulting sheath power dissipation, r.f.-driven sputtering, and r.f.-induced convective cells (which produce edge profile modification). The calculations are embodied in a computer code, ANSAT (antenna sheath analysis tool), and sample ANSAT runs are shown to highlight the physics- and geometry-dependent characteristics of the r.f. sheaths and their relationship to the antenna design. One use of ANSAT is therefore as a design tool, to assess the strengths and weaknesses of a given design with respect to critical voltage handling and edge plasma interaction issues. Additionally, examples are presented where ANSAT has been useful in the analysis and interpretation of ICRF experiments (orig.)

  10. An efficient method for zoospore production, infection and real-time quantification of Phytophthora cajani causing Phytophthora blight disease in pigeonpea under elevated atmospheric CO₂.

    Sharma, Mamta; Ghosh, Raju; Tarafdar, Avijit; Telangre, Rameshwar

    2015-03-25

    Phytophthora blight caused by Phytophthora cajani is an emerging disease of pigeonpea (Cajanus cajan L.) affecting the crop irrespective of cropping system, cultivar grown and soil types. Current detection and identification methods for Phytophthora species rely primarily on cultural and morphological characteristics, the assessment of which is time-consuming and not always suitable. Sensitive and reliable methods for isolation, identification, zoospore production and estimating infection severity are therefore desirable in case of Phytophthora blight of pigeonpea. In this study, protocols for isolation and identification of Phytophthora blight of pigeonpea were standardized. Also the method for zoospore production and in planta infection of P. cajani was developed. Quantification of fungal colonization by P. cajani using real-time PCR was further standardized. Phytophthora species infecting pigeonpea was identified based on mycological characters such as growth pattern, mycelium structure and sporangial morphology of the isolates and confirmed through molecular characterization (sequence deposited in GenBank). For Phytophthora disease development, zoospore suspension of 1 × 10(5) zoospores per ml was found optimum. Phytophthora specific real-time PCR assay was developed using specific primers based on internal transcribed spacer (ITS) 1 and 2. Use of real-time PCR allowed the quantitative estimation of fungal biomass in plant tissues. Detection sensitivities were within the range of 0.001 pg fungal DNA. A study to see the effect of elevated CO₂ on Phytophthora blight incidence was also conducted which indicated no significant difference in disease incidence, but incubation period delayed under elevated CO₂ as compared to ambient level. The zoospore infection method for Phytophthora blight of pigeonpea will facilitate the small and large scale inoculation experiments and thus devise a platform for rapid and reliable screening against Phytophthora blight

  11. Rectus sheath abscess after laparoscopic appendicectomy

    Golash Vishwanath

    2007-01-01

    Full Text Available Port site wound infection, abdominal wall hematoma and intraabdominal abscess formation has been reported after laparoscopic appendicectomy. We describe here a rectus sheath abscess which occurred three weeks after the laparoscopic appendicectomy. It was most likely the result of secondary infection of the rectus sheath hematoma due to bleeding into the rectus sheath from damage to the inferior epigastric arteries or a direct tear of the rectus muscle. As far as we are aware this complication has not been reported after laparoscopic appendicectomy.

  12. Rectus sheath hematoma: three case reports

    Kapan Selin

    2008-01-01

    Full Text Available Abstract Introduction Rectus sheath hematoma is an uncommon cause of acute abdominal pain. It is an accumulation of blood in the sheath of the rectus abdominis, secondary to rupture of an epigastric vessel or muscle tear. It could occur spontaneously or after trauma. They are usually located infraumblically and often misdiagnosed as acute abdomen, inflammatory diseases or tumours of the abdomen. Case presentation We reported three cases of rectus sheath hematoma presenting with a mass in the abdomen and diagnosed by computerized tomography. The patients recovered uneventfully after bed rest, intravenous fluid replacement, blood transfusion and analgesic treatment. Conclusion Rectus sheath hematoma is a rarely seen pathology often misdiagnosed as acute abdomen that may lead to unnecessary laparotomies. Computerized tomography must be chosen for definitive diagnosis since ultrasonography is subject to error due to misinterpretation of the images. Main therapy is conservative management.

  13. Theory of the Electron Sheath and Presheath

    Scheiner, Brett; Baalrud, Scott; Yee, Benjamin; Hopkins, Matthew; Barnat, Edward

    2015-09-01

    Electron sheaths are commonly found near Langmuir probes collecting the electron saturation current. The common assumption is that the probe collects the random flux of electrons incident on the sheath, which tacitly implies that there is no electron presheath and that the flux collected is due to a velocity space truncation of the velocity distribution function (VDF). This work provides a dedicated theory of electron sheaths, which suggests that electron sheaths are not so simple. Motivated by VDFs observed in recent Particle-In-Cell (PIC) simulations, we develop a 1D model for the electron sheath and presheath. In the model, under low temperature plasma conditions, an electron pressure gradient accelerates electrons in the presheath to a flow velocity that exceeds the electron thermal speed at the sheath edge. This pressure gradient allows the generation of large flows compared to those that would be generated by the electric field alone. It is due to this pressure gradient that the electron presheath extends much further into the plasma (nominally by a factor of √{mi /me }) than an analogous ion presheath. Results of the model are compared with PIC simulations. This work was supported by the Office of Fusion Energy Science at the U.S. Department of Energy under contract DE-AC04-94SL85000 and by the Office of Science Graduate Student Research (SCGSR) program under Contract Number DE-AC05-06OR23100.

  14. A sheath model for arbitrary radiofrequency waveforms

    Turner, M. M.; Chabert, Pascal

    2012-10-01

    The sheath is often the most important region of a rf plasma, because discharge impedance, power absorption and ion acceleration are critically affected by the behaviour of the sheath. Consequently, models of the sheath are central to any understanding of the physics of rf plasmas. Lieberman has supplied an analytical model for a radio-frequency sheath driven by a single frequency, but in recent years interest has been increasing in radio-frequency discharges excited by increasingly complex wave forms. There has been limited success in generalizing the Lieberman model in this direction, because of mathematical complexities. So there is essentially no sheath model available to describe many modern experiments. In this paper we present a new analytical sheath model, based on a simpler mathematical framework than that of Lieberman. For the single frequency case, this model yields scaling laws that are identical in form to those of Lieberman, differing only by numerical coefficients close to one. However, the new model may be straightforwardly solved for arbitrary current waveforms, and may be used to derive scaling laws for such complex waveforms. In this paper, we will describe the model and present some illustrative examples.

  15. Sources of resistance in chickpea (cicer arietinum l.) land races against ascochyta rabiei causal agent of ascochyta blight disease

    Duzdemir, O.; Selvi, B.; Yanar, Y.

    2014-01-01

    Ascochyta blight disease, caused by the fungus Ascochyta rabiei, is a major yield limiting factor of chickpea in Turkey and around the world. This study was conducted to identify sources of genetic resistance against chickpea blight caused by Ascochyta rabiei. For this purpose, 68 chickpea land races of different origins were evaluated in both field and growth chamber conditions during 2008-2009 growing seassons. Two standard cultivars were used as a reference, Inci (resistant) and Canitez (susceptible). Disease severity scoring was conducted on a 1-9 rating scale 21 days after inoculation in growth chamber test and at flowering and pot filling stages in field tests. Analysis of variance (ANOVA) test showed a significant difference among the chickpea landraces in ascochyta blight resistance at p<0.05. None of the chickpea land races was highly resistant to the pathogen in growth chamber and field conditions. Only two landraces (10A and 28B) were moderately resistant to the disease. Some of the landraces resulted in a particular plant to exhibit no disease symptoms, indicating that the variation within chickpea land races was high. Therefore, seeds of this plant were harvested separately and preserved for further evaluations. (author)

  16. Effect of meteorological factors on the development of lentil stemphylium blight at different sowing dates in rampur, chitwan, Nepal

    Subash Subedi

    2016-04-01

    Full Text Available Stemphylium species are pathogenic to a number of crops under broad geography and diverse environments. Stemphylium blight of lentil (Lens culinaris Medik caused by Stemphylium botryosum Walr is becoming a serious emerging threat to lentil cultivation and become widespread throughout major legume growing areas in Nepal. Lentil was sown in different dates to observed incidence and severity of stemphylium blight in Rampur, Chitwan during two consecutive years 2012-2014. Lentil seeds sown up to middle of November escaped the disease severity and also resulted higher yield compared to other dates. Disease severity increased with the advancement of sowing date from November 1 to December 21 with decreased yields. The trends of disease development were similar in both years. The maximum and minimum temperatures, total rainfall and sunshine hour ranging from 22.42-24.23°C (mean 23.32°C, 4.12-13.00°C(mean 8.56°C, 9.6-30.5mm (mean 24.85mm and 200.05-309.85 hour (mean 254.95 hour respectively were favorable for disease development. A multiple linear regression model with temperature, rainfall and sunshine hours was developed to predict stemphylium blight disease severity on lentil plants.

  17. How to Patch Active Plasma and Collisionless Sheath: Practical Guide

    Kaganovich, Igor D.

    2002-01-01

    Most plasmas have a very thin sheath compared with the plasma dimension. This necessitates separate calculations of the plasma and sheath. The Bohm criterion provides the boundary condition for calculation of plasma profiles. To calculate sheath properties, a value of electric field at the plasma-sheath interface has to be specified in addition to the Bohm criterion. The value of the boundary electric field and robust procedure to approximately patch plasma and collisionless sheath with a very good accuracy are reported

  18. The use of tissue culture techniques with irradiation to improve potato resistance to late blight

    Al-Safadi, B.; Arabi, M.I.E.

    2004-01-01

    A mutation breeding program was conducted to improve potato (Solanum tuberosum) resistance to late blight disease caused by Phytophthora infestans. In vitro cultured explants from potato cvs. Draga, Diamant, Spunta were irradiated with gamma ray doses 25, 30, and 35 Gy. Growing shoots were cut and re-cultured every 2 weeks until the 4 t h generation (MV 4 ) to make sure no chimeral tissues still existed in the mutant material. Plantlets were subsequently propagated to obtain enough explants for in vitro selection pressure. Around 3000 plantlets from the three cultivars were subjected to selection pressure using co-culture technique. MV 4 explants were incubated in jars, containing MS medium, with mycelia of P. infestans. Surviving plantlets were propagated and re-incubated with the pathogen for three consecutive generations. Resistant plantlets were acclimatized and transferred to pots and grown under glasshouse conditions. Plants were later inoculated, at the adult stage, with sporangial suspension. Cultivar Draga produced the highest number of resistant plants. Ten plants of Draga appeared to be resistant to late blight whereas only one plant from each of the other 2 cultivars was resistant. Mutant plants varied in number of produced minitubers from 13 to 70, Also, weight of these minitubers varied from less than 1 to 35 grams. Selected mutant lines will undergo further testing under field conditions for P. infestans resistance and other agronomic characteristics. (author)

  19. In vitro induction, isolation and selection of potato mutants resistant to late blight

    Al-Safadi, B.; Arabi, M.I.E.

    2003-01-01

    A mutation breeding program was conducted to improve potato resistance to late blight disease caused by Phytophthora infestans. In vitro cultured explants from cvs Draga, Diamant, Spunta were irradiated with gamma ray doses 25, 30, and 35 Gy. Growing shoots were cut and re-cultured every 2 weeks until the 4 th generation (MV 4 ) to make sure no chimeral tissues still existed in the mutant material. Plantlets were subsequently propagated to obtain enough explants for in vitro selection pressure. Around 3,000 plantlets from the 3 cultivars were subjected to selection pressure using co-culture technique. MV 4 explants were incubated in jars, containing MS medium, with mycelia of P. infestans. Surviving plantlets were propagated and re-incubated with the pathogen for 3 consecutive generations. Resistant plantlets were acclimatized and transferred to pots and grown under glasshouse conditions. Plants were later inoculated, at the adult stage, with sporangial suspension. Cv Draga produced the highest number of resistant plants. Ten plants of Draga appeared to be resistant to late blight, whereas only one plant from each of the other 2 cvs was resistant. Mutant plants varied in number of produced minitubers from 13 to 70. Also, weight of these minitubers varied from less than 1 to 35 grams. Selected mutant lines will undergo further testing under field conditions for P. infestans resistance and other agronomic characteristics

  20. Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen

    Cooke, D.E.L.; Cano, L.M.; Raffaele, S.; Bain, R.A.; Cooke, L.R.; Etherington, G.J.; Deahl, K.L.; Farrer, R.A.; Gilroy, E.M.; Goss, E.M.; Grünwald, N.J.; Hein, I.; Maclean, D.; McNicol, J.W.; Randall, E.; Oliva, R.F.; Pel, M.; Shaw, D.S.; Squires, J.N.; Taylor, M.C.; Vleeshouwers, V.G.A.A.; Birch, P.R.J.; Lees, A.K.; Kamoun, S.

    2012-01-01

    Pest and pathogen losses jeopardise global food security and ever since the 19th century Irish famine, potato late blight has exemplified this threat. The causal oomycete pathogen, Phytophthora infestans, undergoes major population shifts in agricultural systems via the successive emergence and

  1. Population genomics of Fusarium graminearum reveals signatures of divergent evolution within a major cereal pathogen

    The cereal pathogen Fusarium graminearum is the primary cause of Fusarium head blight (FHB) and a significant threat to food safety and crop production. To elucidate population structure and identify genomic targets of selection within major FHB pathogen populations in North America we sequenced the...

  2. Gamma radiation-induced mutant of NSIC RC144 with broad-spectrum resistance to bacterial blight

    Alfonso, A.A.; Avellanoza, E.S.; Miranda, R.T.; Espejo, E.O.; Garcia, N.S.

    2014-01-01

    Mutant lines derived from gamma radiation-treated commercial variety NSIC RC144 were produced and screened for novel resistance to bacterial blight, one of the most serious diseases of rice. Preliminary screening of a bulk M2 population through induced method using race 3 of the pathogen Xanthomonas oryzae pv. oryzae (Xoo) resulted in the selection of 89 resistant plants. Subsequent repeated bacterial blight screenings and generation advance for five seasons resulted in the selection of two highly resistant M7 sister lines whose origin can be traced to a single M2 plant. DNA fingerprinting using 63 genome-wide simple sequence repeat (SSR) markers revealed an identical pattern in these lines. Using the same set of markers, they also exhibited 98% similarity to wild type NSIC RC144 indicating that the resistance is due to mutation and not due to genetic admixture or seed impurity. Two seasons of bacterial blight screening using 14 local isolates representing ten races of Xoo revealed an identical reaction pattern in these lines. The reaction pattern was observed to be unique compared to known patterns in four IRBB isolines (IRBB 4, 5, 7 and 21) with strong resistant reaction to bacterial blight suggesting possible novel resistance. The susceptible reaction in F1 testcrosses using Xoo race 6 and the segregation patterns in two F2 populations that fit with the expected 3 susceptible: 1 resistant ratio (P = 0.4, ns) suggest a single-gene recessive mutation in these lines. These mutants are now being used as resistance donor in the breeding program while further molecular characterization to map and characterize the mutated gene is being pursued

  3. Fungicides and Application Timing for Control of Early Leafspot, Southern Blight, and Sclerotinia Blight of Peanut

    W. James Grichar

    2016-01-01

    Full Text Available Field studies were conducted in 2013 and 2014 in south Texas near Yoakum and from 2008 to 2011 in central Texas near Stephenville to evaluate various fungicides for foliar and soilborne disease control as well as peanut yield response under irrigation. Control of Sclerotinia blight caused by Sclerotinia minor Jagger with penthiopyrad at 1.78 L/ha was comparable to fluazinam or boscalid; however, the 1.2 L/ha dose of penthiopyrad did not provide consistent control. Peanut yield was reduced with the lower penthiopyrad dose when compared with boscalid, fluazinam, or the high dose of penthiopyrad. Control of early leaf spot, caused by Cercospora arachidicola S. Hori or southern blight, caused by Sclerotium rolfsii Sacc., with penthiopyrad in a systems approach was comparable with propiconazole, prothioconazole, or pyraclostrobin systems and resulted in disease control that was higher than the nontreated control. Peanut yield was also comparable with the penthiopyrad, propiconazole, prothioconazole, or pyraclostrobin systems and reflects the ability of the newer fungicides to control multiple diseases found in Texas peanut production.

  4. Evaluation of salivary catalase activity in blighted ovum gestation

    Maryam Ahmadizadeh

    2016-05-01

    Full Text Available Background: Anembryonic gestation (blighted ovum is the most common identifiable pathology in the first trimester of pregnancy, always leads to miscarriage. Early pregnancy failures from blighted ovum are often due to chromosomal abnormalities and a poor quality of sperm or egg. Oxidative stresses as a factor of disturbance balance between the production of free radicals and antioxidant defenses is involved in the pathogenesis of many diseases, including mouth and throat cancer and cardiovascular disease. Catalase is one of the defensive systems against damages caused by oxidative stress in human. The aim of this study was to compare the activity of salivary catalase in women with blighted ovum and women with history of normal pregnancy. Methods: This case-control study was performed on 34 patient women with blighted ovum and 34 healthy women as a control group. The study was performed in biochemistry laboratory at the University of Guilan from October 2015 to July 2015. The age range was 20-44 years and 18-45 years in patient and control groups, respectively. Unstimulated saliva samples were collected using spitting method. Catalase activity was measured by evaluating the constant rate of hydrogen peroxide decomposition in patient and control groups. Results: The patient group matched with healthy subjects in average age and having no other diseases history. The biochemical enzymatic assays indicate that the average catalase activities of saliva in patient and control groups were 14.47±3.8 and 16.42±3.48, respectively. Therefore, the catalase activity was significantly reduced in patient group as compared to the control group (P=0.03. Conclusion: The obtained results suggested that oxidative stress plays an important role in the pathogenesis of blighted ovum. Therefore, determination the activity of other antioxidant enzymes, in addition to catalse, may be used as a marker for diagnosis of blighted ovum. More studies with larger studied

  5. Mycotoxins produced by Fusarium spp. associated with Fusarium head blight of wheat in Western Australia.

    Tan, Diana C; Flematti, Gavin R; Ghisalberti, Emilio L; Sivasithamparam, Krishnapillai; Chakraborty, Sukumar; Obanor, Friday; Jayasena, Kithsiri; Barbetti, Martin J

    2012-05-01

    An isolated occurrence of Fusarium head blight (FHB) of wheat was detected in the south-west region of Western Australia during the 2003 harvest season. The molecular identity of 23 isolates of Fusarium spp. collected from this region during the FHB outbreak confirmed the associated pathogens to be F. graminearum, F. acuminatum or F. tricinctum. Moreover, the toxicity of their crude extracts from Czapek-Dox liquid broth and millet seed cultures to brine shrimp (Artemia franciscana) was associated with high mortality levels. The main mycotoxins detected were type B trichothecenes (deoxynivalenol and 3-acetyldeoxynivalenol), enniatins, chlamydosporol and zearalenone. This study is the first report on the mycotoxin profiles of Fusarium spp. associated with FHB of wheat in Western Australia. This study highlights the need for monitoring not just for the presence of the specific Fusarium spp. present in any affected grain but also for their potential mycotoxin and other toxic secondary metabolites.

  6. Systems and models of fire blight (Erwinia amylovora prediction

    Krzysztof Kielak

    2013-12-01

    Full Text Available The paper presents fire blight prediction models and systems, developed in Europe (system Billing - versions: BOS, BRS, BIS95 and originated from this system: Firescreen, FEUERBRA and ANLAFBRA and in United States (Californian system, model Maryblyt and system Cougarblight. Use of above models and systems in various climatic-geographic conditions and comparison of obtained prognostic data to real fire blight occurrence is reviewed. The newest trends in research on improvement of prognostic analyses parameters with their adjustment to particular conditions and consideration of infection source occurrence are also presented.

  7. Plasma sheath in non-Maxwellian plasma

    Shimizu, Takuo; Horigome, Takashi

    1992-01-01

    Reviewing many theoretical and experimental works on the electron-energy distributions (EEDF) of various plasmas, we point out that many plasmas have EEDF of non-Maxwellian in shape. Therefore, the recent treatment of plasma sheath using the Maxwell-Boltzmann distribution approximation should be improved. To do this, we have adopted Rutcher's standard distribution as a generalized form in place of the traditional Maxwellian, and found that the minimum energy of ions entering the sheath edge (Bohm's criterion) varies largely, and have also shown the variation of Debye length with the shape of EEDF. The length is the most important parameter to proceed with more detailed analysis on plasma-sheaths, and also to control them in the future. (author)

  8. Optic Nerve Sheath Meningocele: A Case Report

    Halimi, E.; Wavreille, O.; Rosenberg, R.; Bouacha, I.; Lejeune, J.-P.; Defoort-Dhellemmes, S.

    2013-01-01

    Abstract Isolated optic nerve sheath meningocele is a rare affection defined as the cystic enlargement of the optic nerve sheath filled with cerebrospinal fluid. We report the case of a 39-year-old woman presenting with bilateral meningocele uncovered during a routine examination for headache complaints. A 5-year follow-up validated the lesion’s clinical and imaging stability. Magnetic resonance imaging (MRI) is an essential tool in the diagnosis of this pathology, alongside characteristic symptoms indicating that the meningocele might have progressively expanded into the orbit. In this case we present a therapeutic approach based on pathophysiological hypotheses and review of the literature. PMID:28163760

  9. Creation of initial breeding material of potato with complex resistance to Fusarium dry rot and tuber late blight

    В. В. Гордієнко

    2017-09-01

    Full Text Available Purpose. To select the initial breeding material with complex resistance to Fusarium dry rot and tuber late blight among the created potato of secondary interspecific hyb­rids. Methods. Interspecific hybridization, laboratory test, analytical approach. Results. Based on the interspecific hybridization, the initial breeding material was created and the degree of its resistance to the above pathogens was determined by way of artificial infection of tubers with the inoculum of such fungi as Fusarium sambucinum Fuck and Phytophthora infestans (Mont. De Bary. During interspecific hybridization based on schemes of saturating and enriching crosses, using forms of various species with a high phenotypic expression of resistance to Fusarium dry rot, the result of the cumulative effect of genes that control resistance to the pathogen was observed. Crossing combinations differed significantly for the degree of population average manifestation of resistance to the diseases. Conclusions. Combinations В54, В53, В61 with a mean resistance (above 7 grades to Fusarium dry rot have been selected. Such combinations as B52, B50 and B54 had increased resistance to tuber late blight. It was found that the combination В54 is characterized by complex resistance to both diseases. For further work, the following samples with complex resistance to Fusarium dry rot and tuber late blight (7 grades or more were selected: В59с42, В59с43, В50с16, В50с19, В50с44, В51с1, В51с26, В51с28, В52с11, В52с23, В52с24, В52с29, В53с1, В53с11, В53с17 , В53с23, В54с13, В54с14.

  10. Identification of an emergent bacterial blight of garlic in Brazil

    Outbreaks of a bacterial blight disease occurred on garlic (Allium sativum) cultivars Roxo Caxiense, Quiteria and Cacador in Southern Brazil, and threatened the main production regions of Rio Grande do Sul State. Symptoms were characterized by watersoaked reddish streaks along the leaf midrib, follo...

  11. Fire blight resistance in wild accessions of Malus sieversii

    Fire blight (Erwinia amylovora) is a devastating bacterial disease in apple that results in severe economic losses. Epidemics are becoming more common as susceptible cultivars and rootstocks are being planted, and control is becoming more difficult as antibiotic-resistant strains develop. Resistan...

  12. Impact of fungicide applications for late blight management on ...

    The influence of late blight infections, caused by Phytophthora infestans, was evaluated on thirteen huckleberry (Solanum scabrum) varieties during the 2000 and 2001 cropping seasons in Dschang, Cameroon. A randomised split block design was used. Plants were sprayed four times with Ridomil Plus® (12% metalaxyl + ...

  13. Field management of Phytophthora blight disease of cocoyam ...

    Cocoyam (Colocasia esculenta L). is an important edible tuber crop, but taro leaf blight caused by Phytophthora colocasiae has been the greatest constraint to cocoyam production in Nigeria since 2009. Field trials were conducted to determine the effect of fungicides and the spray regimes on leaf growth, disease incidence, ...

  14. Pyramiding of blast and bacterial leaf blight resistance genes into ...

    Blast caused by the fungus Magnaporthe oryzae (Hebert) Barr. and bacterial leaf blight (BLB) caused by Xanthomonas oryzae pv. oryzae (Xoo) are two major diseases of rice (Oryza sativa). The use of varietal resistance is the most appropriate strategy for controlling the diseases, and molecular assisted selection can ...

  15. Control of Late Blight of Tomato and Potato by Oilgochitosan

    Yong Ho Choi

    2011-08-01

    Full Text Available Chitosan is a linear polysaccharide composed of randomly distributed β-(1-4-linked D-glucosamine and Nacetyl- D-glucosamine. There have been many reports on the induced systemic resistance and in vivo antifungal activities of higher molecular weight chitosans with molecular weights over 3,000 amu (atomatic mass unit, but there are few papers on in vivo antifungal activities of low molecular weight chitosans (oligochitosans with molecular weights less than 3,000 amu. In our study, an oligochitosan sample (320?3,000 amu showed a potent 1-day protective activity with control values more than 94% at concentrations of 500 and 1,000 ?g/ml especially against tomato late blight caused by Phytophthora infestans under growth chamber conditions. It also displayed a moderate 1-day protective activity with control values of 67?89% at concentrations of 500 and 1,000 ?g/ml against wheat leaf rust and red pepper anthracnose. On the other hand, it showed a 16-hr curative activity against red pepper anthracnose, but not against tomato late blight and wheat leaf rust. In field experiments, oligochitosan effectively suppressed the development of late blight on potato and tomato plants with control values of 72% and 48%, respectively. The results strongly indicate that oligochitosan can be used as an eco-friendly organic material for the control of late blight on tomato and potato plants.

  16. Chemical control of blossom blight disease of sarpagandha caused ...

    ONOS

    2010-09-20

    Sep 20, 2010 ... Chemical control of blossom blight disease of sarpagandha caused by Colletotrichum capsici. R. S. Shukla, Abdul-Khaliq and M. Alam*. Department of Plant Pathology, Central Institute of Medicinal and Aromatic Plants, Council of Scientific and Industrial. Research, P. O. CIMAP, Lucknow–226 015, India.

  17. Integrated Control of Fire Blight with Antagonists and Oxytetracycline

    In the Pacific Northwest of the United States, the antibiotic streptomycin provided excellent control of fire blight until resistant isolates of Erwinia amylovora arose. Oxytetracycline (Mycoshield) is now sprayed as an alternative antibiotic. We found that the duration of inhibitory activity of o...

  18. Integrated Control of Fire Blight with Bacterial Antagonists and Oxytetracycline

    In the Pacific Northwest of the United States, the antibiotic streptomycin provided excellent control of fire blight until resistant isolates of Erwinia amylovora were prevalent. Oxytetracycline (Mycoshield) is now sprayed as an alternative antibiotic. We found that the duration of inhibitory acti...

  19. Cassava bacterial blight in Africa: the state of knowledge and ...

    Introduced to Africa in the 1970s, cassava bacterial blight caused by Xanthomonas campestris pv. manihotis (XCM) is present in almost all cropping areas. In the past fifteen years, advances have been made in knowledge of the biology and molecular genetics of XCM, host-parasite relationships and epidemiology of the ...

  20. Improvement of common bacterial blight resistance in South African ...

    Common bacterial blight (CBB) caused by Xanthomonas axonopodis pv. phaseoli is an important seed-borne disease of dry beans in South Africa. Development of resistant cultivars is considered the best control measurement for the disease. Backcross breeding was used to improve BB resistance in the small white ...

  1. Field reaction of cassava genotypes to anthracnose, bacterial blight ...

    Field reaction of cassava genotypes to anthracnose, bacterial blight, cassava mosaic disease and their effects on yield. ... The BYDV-PAV and BYDV-RPV serotypes were identified from 9 and 10 of the 11 surveyed fields, respectively, with the two serotypes co-infecting some plants. Of the nine wheat cultivars surveyed, four ...

  2. Epidemiology and integrated control of Potato Late Blight in Europe

    Cooke, R.J.; Schepers, H.T.A.M.; Hermansen, A.; Bain, R.; Bradshaw, N.; Ritchie, F.; Shaw, D.S.; Evenhuis, A.; Kessel, G.J.T.; Wander, J.G.N.; Andersson, B.; Hansen, J.G.; Hannukkala, A.; Naerstad, R.; Nielsen, B.

    2011-01-01

    Phytophthora infestans, the causal agent of late blight, is a major threat to potato production in northwestern Europe. Before 1980, the worldwide population of P. infestans outside Mexico appeared to be asexual and to consist of a single clonal lineage of A1 mating type characterized by a single

  3. Molecular characterization of early blight disease resistant and ...

    Potato early blight disease caused by Alternaria solani is one of the major factors limiting potato production worldwide. Developing highly resistant cultivars is the most effective way to control the disease. In this study, 20 random amplified polymorphic DNA (RAPD) and 6 simple sequence repeats (SSR) primers were ...

  4. The evaluation of winter wheat roots and leaf sheath diseases diagnostic methods

    Ewa Solarska

    2012-12-01

    Full Text Available The maltose and mineral media for isolation of Gaeumannomyces graminis from roots were assessed. The differences in numbers of obtained isolates were found depending on the medium used and sampling date. Easier identification of pathogen was possible employing maltose medium. The fungi from genus Fusarium occurring on winter wheat leaf sheaths were identified by mycological analysis and PCR, while the fungus Pseudocercosporella herpotrichoides was detected by PCR and ELISA methods. PCR and ELISA methods enabled to detect pathogens also in periods before the disease symptoms on plants occurred.

  5. Arthroscopic sheath design and technical evaluation

    Tuijthof, Gabriëlle J. M.; Blankevoort, Leendert; Herder, Just L.; van Dijk, C. Niek

    2009-01-01

    The maintenance of a clear view on the operation area is essential to perform a minimally invasive procedure In arthroscopy, this is achieved by irrigating the Joint with a saline fluid that is pumped through the joint At present the arthroscopic sheaths are not designed for optimal irrigation,

  6. Phytophthora infestans effectors IPI-O1 and IPI-O4 each contribute to pathogen virulence

    Potato late blight, caused by the oomycete pathogen Phytophthora infestans, is one of the most destructive plant diseases. Despite decades of intensive breeding efforts, it remains a threat to potato production worldwide, in part because newly evolved pathogen isolates quickly overcome major resista...

  7. Genetic instability in nerve sheath cell tumors

    Rogatto, Silvia Regina; Casartelli, Cacilda; Rainho, Claudia Aparecida

    1995-01-01

    After in vitro culture, we analyzed cytogenetically four acoustic nerve neurinomas, one intraspinal neurinoma and one neurofibroma obtainedfrom unrelated patients. Monosomy of chromosomes 22 and 16 was an abnormality common to all cases, followed in frequency by loss of chromosomes 18 (three cases...... by the presence of polyploid cells with inconsistent abnormalities, endoreduplications and telomeric associations resulting in dicentric chromosomes. It is probable that these cytogenetic abnormalities represent some kind of evolutionary advantage for the in vitro progression of nerve sheath tumors....

  8. Direct suppression of a rice bacterial blight (Xanthomonas oryzae pv. oryzae) by monoterpene (S)-limonene.

    Lee, Gun Woong; Chung, Moon-Soo; Kang, Mihyung; Chung, Byung Yeoup; Lee, Sungbeom

    2016-05-01

    Rice bacterial blight, caused by Xanthomonas oryzae pv. oryzae (Xoo), is a severe disease of rice plants. Upon pathogen infection, rice biosynthesizes phytoalexins, including diterpenoids such as momilactones, phytocassanes, and oryzalexins. However, information on headspace volatiles in response to Xoo infection is limited. We have examined headspace volatile terpenes, induced by the infection of Xoo, and investigated their biological roles in the rice plant. Monoterpenes α-thujene, α-pinene, sabinene, myrcene, α-terpene, and (S)-limonene and sesquiterpenes cyclosativene, α-copaene, and β-elemene were detected from 1-week-old Xoo-infected rice seedlings, by solid-phase microextraction-gas chromatography-mass spectrometry. All monoterpenes were constitutively released from rice seedlings before Xoo infection. However, (S)-limonene emission was further elicited after exposure of the seedlings to Xoo in coincidence with upregulation of limonene synthase gene (OsTPS20) transcripts. Only the stereospecific (S)-limonene [and not (R)-limonene or other monoterpenes] severely inhibited Xoo growth, as confirmed by disc diffusion and liquid culture assays. Rice seedlings showed suppressed pathogenic symptoms suggestive of resistance to Xoo infection after foliar treatment with (S)-limonene. Collectively, our findings suggest that (S)-limonene is a volatile phytoanticipin, which plays a significant role in suppressing Xoo growth in rice seedlings.

  9. Nucleotide diversity analysis of three major bacterial blight resistance genes in rice.

    Waikhom Bimolata

    Full Text Available Nucleotide sequence polymorphisms among R gene alleles influence the process of co-evolutionary interaction between host and pathogen by shaping the response of host plants towards invading pathogens. Here, we present the DNA sequence polymorphisms and diversities present among natural alleles of three rice bacterial blight resistance genes, Xa21, Xa26 and xa5. The diversity was examined across different wild relatives and cultivars of Oryza species. Functional significance of selected alleles was evaluated through semi-quantitative reverse transcription polymerase chain reaction and real time PCR. The greatest nucleotide diversity and singleton variable sites (SVS were present in Xa26 (π = 0.01958; SVS = 182 followed by xa5 and Xa21 alleles. The highest frequency of single nucleotide polymorphisms were observed in Xa21 alleles and least in xa5. Transition bias was observed in all the genes and 'G' to 'A' transitions were more favored than other form of transitions. Neutrality tests failed to show the presence of selection at these loci, though negative Tajima's D values indicate the presence of a rare form of polymorphisms. At the interspecies level, O. nivara exhibited more diversity than O. sativa. We have also identified two nearly identical resistant alleles of xa5 and two sequentially identical alleles of Xa21. The alleles of xa5 showed basal levels of expression while Xa21 alleles were functionally not expressed.

  10. Studies on the cost-effective management of Alternaria blight of rapeseed-mustard (Brassica spp.

    M.M. Khan

    2007-08-01

    Full Text Available Three systemic fungicides: Topsin-M (Thiophanate methyl, 70%WP, Ridomil MZ (Mancozeb, 64% + Metalaxyl, 8%WP, and Bavistin (Carbendazim, 50%WP alone and in combination with four non-systemic fungicides Captaf (Captan, 50%WP, Indofil M-45 (Mancozeb, 75%WP, Indofil Z-78 (Zineb, 75%WP, and Thiram (Thiram, 75%WP were evaluated both in vitro and in vivo for their effectiveness to manage Alternaria blight of rapeseedmustard caused by Alternaria brassicae. A pure culture of the pathogenic fungus was applied in the field at 2 g colonized sorghum seeds kg-1 soil. All the fungicides were evaluated for their efficacy at various concentrations, 50, 100, 150, 200 and 500 ppm, and were sprayed in the field at 0.2% a.i. l-1. All fungicides significantly reduced the severity of the disease but Ridomil MZ was most effective. Topsin-M at a concentration of 500 ppm was the most effective in reducing radial growth of the pathogenic fungi (74.2%. Ridomil MZ reduced disease severity by 32% and was followed in effectiveness by the combination Bavistin+Captaf (26.5%. Maximum yield was obtained in plots sprayed with Bavistin+Captaf (1198 kg ha-1 followed by Bavistin+Indofil Z-78 (1172 kg ha-1. It was worth noting that the highest net profit as well as the highest cost-benefit ratio was obtained with Bavistin+Indofil Z-78 (1:3.2, followed by Bavistin+Captaf (1:1.3.

  11. Radio frequency sheaths in an oblique magnetic field

    Myra, J. R.; D'Ippolito, D. A.

    2015-01-01

    The physics of radio-frequency (rf) sheaths near a conducting surface is studied for plasmas immersed in a magnetic field that makes an oblique angle θ with the surface. A set of one-dimensional equations is developed that describes the dynamics of the time-dependent magnetic presheath and non-neutral Debye sheath. The model employs Maxwell-Boltzmann electrons, and the magnetization and mobility of the ions is determined by the magnetic field strength, and wave frequency, respectively. The angle θ, assumed to be large enough to insure an electron-poor sheath, is otherwise arbitrary. Concentrating on the ion-cyclotron range of frequencies, the equations are solved numerically to obtain the rectified (dc) voltage, the rf voltage across the sheath, and the rf current flowing through the sheath. As an application of this model, the sheath voltage-current relation is used to obtain the rf sheath impedance, which in turn gives an rf sheath boundary condition for the electric field at the sheath-plasma interface that can be used in rf wave codes. In general, the impedance has both resistive and capacitive contributions, and generalizes previous sheath boundary condition models. The resistive part contributes to parasitic power dissipation at the wall

  12. Mechanisms of induced susceptibility to Diplodia tip blight in drought-stressed Austrian pine.

    Sherwood, Patrick; Villari, Caterina; Capretti, Paolo; Bonello, Pierluigi

    2015-05-01

    Plants experiencing drought stress are frequently more susceptible to pathogens, likely via alterations in physiology that create favorable conditions for pathogens. Common plant responses to drought include the production of reactive oxygen species (ROS) and the accumulation of free amino acids (AAs), particularly proline. These same phenomena also frequently occur during pathogenic attack. Therefore, drought-induced perturbations in AA and ROS metabolism could potentially contribute to the observed enhanced susceptibility. Furthermore, nitrogen (N) availability can influence AA accumulation and affect plant resistance, but its contributions to drought-induced susceptibility are largely unexplored. Here we show that drought induces accumulation of hydrogen peroxide (H2O2) in Austrian pine (Pinus nigra Arnold) shoots, but that shoot infection by the blight and canker pathogen Diplodia sapinea (Fr.) Fuckel leads to large reductions in H2O2 levels in droughted plants. In in vitro assays, H2O2 was toxic to D. sapinea, and the fungus responded to this oxidative stress by increasing catalase and peroxidase activities, resulting in substantial H2O2 degradation. Proline increased in response to drought and infection when examined independently, but unlike all other AAs, proline further increased in infected shoots of droughted trees. In the same tissues, the proline precursor, glutamate, decreased significantly. Proline was found to protect D. sapinea from H2O2 damage, while also serving as a preferred N source in vitro. Fertilization increased constitutive and drought-induced levels of some AAs, but did not affect plant resistance. A new model integrating interactions of proline and H2O2 metabolism with drought and fungal infection of plants is proposed. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please email: journals.permissions@oup.com.

  13. Optic Nerve Sheath Mechanics in VIIP Syndrome

    Raykin, Julia; Forte, Taylor E.; Wang, Roy; Feola, Andrew; Samuels, Brian; Myers, Jerry; Nelson, Emily; Gleason, Rudy; Ethier, C. Ross

    2016-01-01

    Visual Impairment Intracranial Pressure (VIIP) syndrome is a major concern in current space medicine research. While the exact pathology of VIIP is not yet known, it is hypothesized that the microgravity-induced cephalad fluid shift increases intracranial pressure (ICP) and drives remodeling of the optic nerve sheath. To investigate this possibility, we are culturing optic nerve sheath dura mater samples under different pressures and investigating changes in tissue composition. To interpret results from this work, it is essential to first understand the biomechanical response of the optic nerve sheath dura mater to loading. Here, we investigated the effects of mechanical loading on the porcine optic nerve sheath.Porcine optic nerves (number: 6) were obtained immediately after death from a local abattoir. The optic nerve sheath (dura mater) was isolated from the optic nerve proper, leaving a hollow cylinder of connective tissue that was used for biomechanical characterization. We developed a custom mechanical testing system that allowed for unconfined lengthening, twisting, and circumferential distension of the dura mater during inflation and under fixed axial loading. To determine the effects of variations in ICP, the sample was inflated (0-60 millimeters Hg) and circumferential distension was simultaneously recorded. These tests were performed under variable axial loads (0.6 grams - 5.6 grams at increments of 1 gram) by attaching different weights to one end of the dura mater. Results and Conclusions: The samples demonstrated nonlinear behavior, similar to other soft connective tissue (Figure 1). Large increases in diameter were observed at lower transmural pressures (approximately 0 to 5 millimeters Hg), whereas only small diameter changes were observed at higher pressures. Particularly interesting was the existence of a cross-over point at a pressure of approximately 11 millimeters Hg. At this pressure, the same diameter is obtained for all axial loads applied

  14. Characterization of stuA mutants in the mycotoxigenic maize pathogen Fusarium verticillioides

    Fusarium verticillioides is a major pathogen of maize, causing root, stalk and ear rots and seedling blight. It also produces fumonisin mycotoxins. Ingestion of fumonisin-contaminated corn causes acute toxicity in livestock and is a potential carcinogen to humans. StuA, an APSES protein class transc...

  15. Rice-Infecting Pseudomonas Genomes Are Highly Accessorized and Harbor Multiple Putative Virulence Mechanisms to Cause Sheath Brown Rot

    Quibod, Ian Lorenzo; Grande, Genelou; Oreiro, Eula Gems; Borja, Frances Nikki; Dossa, Gerbert Sylvestre; Mauleon, Ramil; Cruz, Casiana Vera; Oliva, Ricardo

    2015-01-01

    Sheath rot complex and seed discoloration in rice involve a number of pathogenic bacteria that cannot be associated with distinctive symptoms. These pathogens can easily travel on asymptomatic seeds and therefore represent a threat to rice cropping systems. Among the rice-infecting Pseudomonas, P. fuscovaginae has been associated with sheath brown rot disease in several rice growing areas around the world. The appearance of a similar Pseudomonas population, which here we named P. fuscovaginae-like, represents a perfect opportunity to understand common genomic features that can explain the infection mechanism in rice. We showed that the novel population is indeed closely related to P. fuscovaginae. A comparative genomics approach on eight rice-infecting Pseudomonas revealed heterogeneous genomes and a high number of strain-specific genes. The genomes of P. fuscovaginae-like harbor four secretion systems (Type I, II, III, and VI) and other important pathogenicity machinery that could probably facilitate rice colonization. We identified 123 core secreted proteins, most of which have strong signatures of positive selection suggesting functional adaptation. Transcript accumulation of putative pathogenicity-related genes during rice colonization revealed a concerted virulence mechanism. The study suggests that rice-infecting Pseudomonas causing sheath brown rot are intrinsically diverse and maintain a variable set of metabolic capabilities as a potential strategy to occupy a range of environments. PMID:26422147

  16. Caracterização citomorfológica, cultural, molecular e patogênica de Rhizoctonia solani Kühn associado ao arroz em Tocantins, Brasil Citomorphological, cultural, molecular and pathogenical characterization of Rhizoctonia solani Kühn associated with rice in Tocantins, Brazil

    Elaine Costa Souza

    2007-06-01

    significant yield losses on rice crops under irrigation. The main objective of this research was to determine the anastomosis group (AG of R. solani associated with rice in that area, testing the hypothesis that these isolates are from the AG-1 IA, which is also associated with the soybean leaf blight occurring in wet areas of Northern Brazil. All the four rice isolates were characterized, by hyphal fusion, as AG-1 IA. By cultural characterization, based on basal temperatures for mycelial growth (minimum, optimum and maximum, the rice isolates had growth profile similar to the tester isolates AG-1 IA, AG-1 IB and AG-1 IC. The rice isolates were characterized as autotrophic for thiamine, as well as the AG testers AG-1 IA, IB, IC, AG-4 HGI and the soybean leaf blight isolate SJ-047. The pathogenicity test on rice IRGA-409 and the cross pathogenicity on soybean IAC-18 (susceptible to the leaf blight disease indicated that, besides causing sheath blight, these rice isolates also cause leaf blight on soybean. Similarly, the soybean isolates SJ-047 was pathogenic to rice. The sequences from the ITS-5.8S region of rDNA from the rice isolates were similar to sequences of AG-1 IA deposited at GenBank® - NCBI. The ITS-rDNA phylogeny indicated a common phylogenetic group formed by these rice isolates, the isolate SJ-047 and the tester AG-1 IA. Thus, based on cytomorphological, cultural, phylogenetics and pathogenic attributes, the hypothesis that the rice isolates of R. solani from Tocantins all belong to the AG-1 IA was confirmed, besides the indication that these isolates can also cause soybean foliar blight.

  17. Sheath insulator final test report, TFE Verification Program

    1994-07-01

    The sheath insulator in a thermionic cell has two functions. First, the sheath insulator must electrically isolate the collector form the outer containment sheath tube that is in contact with the reactor liquid metal coolant. Second, The sheath insulator must provide for high uniform thermal conductance between the collector and the reactor coolant to remove away waste heat. The goals of the sheath insulator test program were to demonstrate that suitable ceramic materials and fabrication processes were available, and to validate the performance of the sheath insulator for TFE-VP requirements. This report discusses the objectives of the test program, fabrication development, ex-reactor test program, in-reactor test program, and the insulator seal specifications

  18. Sheath insulator final test report, TFE Verification Program

    1994-07-01

    The sheath insulator in a thermionic cell has two functions. First, the sheath insulator must electrically isolate the collector form the outer containment sheath tube that is in contact with the reactor liquid metal coolant. Second, The sheath insulator must provide for high uniform thermal conductance between the collector and the reactor coolant to remove away waste heat. The goals of the sheath insulator test program were to demonstrate that suitable ceramic materials and fabrication processes were available, and to validate the performance of the sheath insulator for TFE-VP requirements. This report discusses the objectives of the test program, fabrication development, ex-reactor test program, in-reactor test program, and the insulator seal specifications.

  19. Sheath heating in low-pressure capacitive radio frequency discharges

    Wood, B.P.

    1991-01-01

    Capacitively coupled, parallel plate, r.f. discharges are commonly used for materials processing. The electrons in such a discharge gain and lose energy by reflection from the oscillating sheaths which form at the electrodes. Previous models of the electron heating by this mechanism have assumed that the sheath motion is slow compared to the electron thermal velocity, so that the electron energy change from each reflection is small. Here, the heating rate, density, and sheath width relations are derived analytically in the limit of very fast sheath motion. Numerical results are presented spanning the slow and fast limits. Results from particle-in-cell simulations show that in the large-energy-change regime, an electron beam is produced on each sheath expansion. At low pressure, this beam can traverse the plasma and interact with the sheath at the opposite electrode, producing a beam energy and density dependence on the length of the discharge. The beam produces a time and space varying warm tail on the electron energy distribution. Two revised heating models are derived, assuming power-law and two-temperature electron energy distributions, with temporal variation in electron temperature. These revised models yield new predictions for the variation of the power, density, and sheath thickness with applied r.f. voltage. These predictions are compared with simulation results and laboratory experiment. The electron sheath motion is investigated experimentally by observing the signal on a floating probe in the sheath region. This is compared to the signal product by a non-linear circuit model which accounts for the perturbation of the sheath potential by the probe and includes various forms of sheath motion. The experimental observations are consistent with the analytical predictions. Experimental observations of plasma-sheath resonance oscillations are presented which agree with analytical predictions

  20. Nondestructive testing of metallic sheath for internally cooled superconductor

    McClung, R.W.; Cook, K.V.; Dodd, C.V.; Smith, J.H.

    1983-01-01

    For quality assurance in the Oak Ridge National Laboratory Large Coil Program, we developed ultrasonic and eddy-current techniques to examine the JBK-75 alloy sheath for superconducting cable for a large magnet. Ultrasound was used to examine the strip before forming into the sheath, and eddy currents were used to examine the seam weld after the sheath had been formed around the cable

  1. Engineering fire blight resistance into the apple cultivar 'Gala' using the FB_MR5 CC-NBS-LRR resistance gene of Malus × robusta 5.

    Broggini, Giovanni A L; Wöhner, Thomas; Fahrentrapp, Johannes; Kost, Thomas D; Flachowsky, Henryk; Peil, Andreas; Hanke, Maria-Viola; Richter, Klaus; Patocchi, Andrea; Gessler, Cesare

    2014-08-01

    The fire blight susceptible apple cultivar Malus × domestica Borkh. cv. 'Gala' was transformed with the candidate fire blight resistance gene FB_MR5 originating from the crab apple accession Malus × robusta 5 (Mr5). A total of five different transgenic lines were obtained. All transgenic lines were shown to be stably transformed and originate from different transgenic events. The transgenic lines express the FB_MR5 either driven by the constitutive CaMV 35S promoter and the ocs terminator or by its native promoter and terminator sequences. Phenotyping experiments were performed with Mr5-virulent and Mr5-avirulent strains of Erwinia amylovora, the causal agent of fire blight. Significantly less disease symptoms were detected on transgenic lines after inoculation with two different Mr5-avirulent E. amylovora strains, while significantly more shoot necrosis was observed after inoculation with the Mr5-virulent mutant strain ZYRKD3_1. The results of these experiments demonstrated the ability of a single gene isolated from the native gene pool of apple to protect a susceptible cultivar from fire blight. Furthermore, this gene is confirmed to be the resistance determinant of Mr5 as the transformed lines undergo the same gene-for-gene interaction in the host-pathogen relationship Mr5-E. amylovora. © 2014 Society for Experimental Biology, Association of Applied Biologists and John Wiley & Sons Ltd.

  2. Annihilation model of the Tormac sheath

    Hammer, J.H.

    1979-02-01

    A one-dimensional, steady state fluid model is developed to describe the boundary layer between plasma and magnetic field that occurs in the Tormac sheath. Similar systems which may be treatable by the same model are tokamaks with divertors and reversed field mirrors. The model includes transport across the magnetic field as well as mirror losses along the field, the latter being represented as annihilation terms in the one-dimensional equations. The model equations are derived from the two-dimensional, time dependent hierarchy of equations generated by taking velocity moments of the kinetic equation including collisions

  3. ICRF antenna Faraday shield plasma sheath model

    Whealton, J.H.; Ryan, P.M.; Raridon, R.J.

    1990-01-01

    A two-dimensional nonlinear formulation that explicitly considers the plasma edge near a Faraday shield in a self-consistent manner is used in the modeling of the ion motion for a Faraday shield concept and model suggested by Perkins. Two models are considered that may provide significant insight into the generation of impurities for ion cyclotron resonance heating (ICRH) antennas. In one of these models a significant sheath periodically forms next to the Faraday screen, with ion acoustic waves heating the ions in the plasma. (orig.)

  4. The characteristics of RF modulated plasma boundary sheaths: An analysis of the standard sheath model

    Naggary, Schabnam; Brinkmann, Ralf Peter

    2015-09-01

    The characteristics of radio frequency (RF) modulated plasma boundary sheaths are studied on the basis of the so-called ``standard sheath model.'' This model assumes that the applied radio frequency ωRF is larger than the plasma frequency of the ions but smaller than that of the electrons. It comprises a phase-averaged ion model - consisting of an equation of continuity (with ionization neglected) and an equation of motion (with collisional ion-neutral interaction taken into account) - a phase-resolved electron model - consisting of an equation of continuity and the assumption of Boltzmann equilibrium -, and Poisson's equation for the electrical field. Previous investigations have studied the standard sheath model under additional approximations, most notably the assumption of a step-like electron front. This contribution presents an investigation and parameter study of the standard sheath model which avoids any further assumptions. The resulting density profiles and overall charge-voltage characteristics are compared with those of the step-model based theories. The authors gratefully acknowledge Efe Kemaneci for helpful comments and fruitful discussions.

  5. Partial resistance of tomatoes against Phytophthora infestans, the late blight fungus

    Turkensteen, L.J.

    1973-01-01

    In the Netherlands, the source of inoculum of the late blight fungus on tomatoes is the late blight fungus on potato crops. In regions of Europe mentioned, where tomatoes are grown in the open, P. infestans on tomatoes is the main source of inoculum. Especially in

  6. Induced mutation for disease resistance in rice with special reference to blast, bacterial blight and tungro

    Mathur, S.C.

    1983-01-01

    Rice varieties Ratna, Pusa 2-21, Vijaya and Pankaj have been treated with gamma rays, EMS or sodium azide to improve their resistance against blast, bacterial leaf blight or tungro virus. For blast and tungro, mutants with improved resistance were selected. Variation in reaction to bacterial leaf blight has been used in crossbreeding to accumulate genes for resistance. (author)

  7. Mapping, isolation and characterization of genes responsible for late blight resistance in potato

    Pel, M.

    2010-01-01

    Late blight (LB), caused by the oomycete Phytophthora infestans, is one of the most
    devastating diseases on potato. Resistance (R) genes from the wild species Solanum demissum
    have been used by breeders to generate late blight resistant cultivars, but resistance was soon
    overcome

  8. Differentiating needle blights of white pine in the interpretation of fume damage

    Hepting, G H; Berry, C R

    1961-01-01

    In white pines it is difficult to differentiate between needle blight caused by air pollution and numerous other causes. White pines are regarded as sensitive to sulfur dioxide and fluorine. The authors attempt to provide means of identifying and separating blights of white pines in the southern Appalachians.

  9. Long-term impact of shoot blight disease on red pine saplings

    Linda M. Haugen; Michael E. Ostry

    2013-01-01

    Damage from Sirococcus and Diplodia shoot blights of red pine is widespread and periodically severe in the Lake States. An outbreak of shoot blight occurred in red pine sapling plantations across northern Wisconsin, northern Minnesota, and the Upper Peninsula of Michigan in 1993. We established monitoring plots in red pine sapling...

  10. Analysing potato late blight control as a social-ecological system using fuzzy cognitive mapping

    Pacilly, Francine C.A.; Groot, Jeroen C.J.; Hofstede, Gert Jan; Schaap, Ben F.; Lammerts van Bueren, Edith

    2016-01-01

    Potato late blight, caused by Phytophthora infestans, is one of the main diseases in potato production, causing major losses in yield. Applying environmentally harmful fungicides is the prevailing and classical method for controlling late blight, thus contaminating food and water. There is

  11. Crown sheath rot of rice: host-range and varietal resistance to Gaeumannomyces graminis var. graminis

    Cecília do Nascimento Peixoto

    2014-09-01

    Full Text Available Several gramineous plants occurring in rice fields show symptoms of crown sheath rot of rice, caused by Gaeumannomyces graminis var. graminis (Ggg, under natural conditions of infection. The pathogenicity of the Ggg-a 01 isolate, collected from rice, was tested on seven grass species and eight cereals, under greenhouse conditions, in order to get information on host-range and resistance of rice genotypes to crown sheath rot. The inoculation tests showed that the rice isolate was pathogenic to weeds such as Echinochloa crusgalli, Pennisetum setosum, Brachiaria sp., Digitaria horizontalis, Brachiaria plantaginea, Eleusine indica and Cenchrus echinatus, and that these species are potential hosts to the pathogen. Winter cereals such as wheat, oat, rye, barley and triticale, as well as sorghum, maize and millet, presented different degrees of susceptibility to the Ggg-a isolate. Significant differences were observed in relation to lesion height and production of hyphopodia and perithecia on culms. Perithecia were not observed on millet, sorghum, southern sandbur and maize. The resistance of 58 upland rice genotypes was tested, and the SCIA16 and SCIA08 genotypes presented lesion height significantly smaller, being considered resistant, when compared to the highly susceptible CNAS10351 genotype.

  12. First record of Glomerella cingulata causing leaf blight on Talauma ovata (Magnoliaceae) Primeiro relato de Glomerella cingulata causando queima foliar em Talauma ovata (Magnoliaceae)

    Bruno Sérgio Vieira; Olinto Liparini Pereira; Márcio Luiz Batista; Robert Weingart Barreto

    2005-01-01

    Glomerella cingulata was found causing severe leaf blight on Talauma ovata, a common tree species in the Atlantic tropical rain forest floodplains of Southern Brazil. The disease and pathogen are described and illustrated and patogenicity is also demonstrated. This is the first report of this disease.Glomerella cingulata foi encontrado causando severa queima-foliar em Talauma ovata, uma espécie arbórea comum em florestas úmidas tropicais do Sudeste do Brasil. A doença e o patógeno foram descr...

  13. Lipid transfer proteins and protease inhibitors as key factors in the priming of barley responses to Fusarium head blight disease by a biocontrol strain of Pseudomonas fluorescens.

    Petti, Carloalberto; Khan, Mojibur; Doohan, Fiona

    2010-11-01

    Strains of non-pathogenic pseudomonad bacteria, can elicit host defence responses against pathogenic microorganisms. Pseudomonas fluorescens strain MKB158 can protect cereals from pathogenesis by Fusarium fungi, including Fusarium head blight which is an economically important disease due to its association with both yield loss and mycotoxin contamination of grain. Using the 22 K barley Affymetrix chip, trancriptome studies were undertaken to determine the local effect of P. fluorescens strain MKB158 on the transcriptome of barley head tissue, and to discriminate transcripts primed by the bacterium to respond to challenge by Fusarium culmorum, a causal agent of the economically important Fusarium head blight disease of cereals. The bacterium significantly affected the accumulation of 1203 transcripts and primed 74 to positively, and 14 to negatively, respond to the pathogen (P = 0.05). This is the first study to give insights into bacterium priming in the Triticeae tribe of grasses and associated transcripts were classified into 13 functional classes, associated with diverse functions, including detoxification, cell wall biosynthesis and the amplification of host defence responses. In silico analysis of Arabidopsis homologs of bacterium-primed barley genes indicated that, as is the case in dicots, jasmonic acid plays a role in pseudomonad priming of host responses. Additionally, the transcriptome studies described herein also reveal new insights into bacterium-mediated priming of host defences against necrotrophs, including the positive effects on grain filling, lignin deposition, oxidative stress responses, and the inhibition of protease inhibitors and proteins that play a key role in programmed cell death.

  14. Plant Growth Promotion and Suppression of Bacterial Leaf Blight in Rice by Inoculated Bacteria.

    Sumera Yasmin

    Full Text Available The present study was conducted to evaluate the potential of rice rhizosphere associated antagonistic bacteria for growth promotion and disease suppression of bacterial leaf blight (BLB. A total of 811 rhizospheric bacteria were isolated and screened against 3 prevalent strains of BLB pathogen Xanthomonas oryzae pv. oryzae (Xoo of which five antagonistic bacteria, i.e., Pseudomonas spp. E227, E233, Rh323, Serratia sp. Rh269 and Bacillus sp. Rh219 showed antagonistic potential (zone of inhibition 1-19 mm. Production of siderophores was found to be the common biocontrol determinant and all the strains solubilized inorganic phosphate (82-116 μg mL-1 and produced indole acetic acid (0.48-1.85 mg L-1 in vitro. All antagonistic bacteria were non-pathogenic to rice, and their co-inoculation significantly improved plant health in terms of reduced diseased leaf area (80%, improved shoot length (31%, root length (41% and plant dry weight (60% as compared to infected control plants. Furthermore, under pathogen pressure, bacterial inoculation resulted in increased activity of defense related enzymes including phenylalanine ammonia-lyase and polyphenol oxidase, along with 86% increase in peroxidase and 53% increase in catalase enzyme activities in plants inoculated with Pseudomonas sp. Rh323 as well as co-inoculated plants. Bacterial strains showed good colonization potential in the rice rhizosphere up to 21 days after seed inoculation. Application of bacterial consortia in the field resulted in an increase of 31% in grain yield and 10% in straw yield over non-inoculated plots. Although, yield increase was statistically non-significant but was accomplished with overall saving of 20% chemical fertilizers. The study showed that Pseudomonas sp. Rh323 can be used to develop dual-purpose inoculum which can serve not only to suppress BLB but also to promote plant growth in rice.

  15. The plasma-sheath boundary region

    Franklin, R N

    2003-01-01

    In this review an attempt is made to give a broad coverage of the problem of joining plasma and sheath over a wide range of physical conditions. We go back to the earliest works quoting them, where appropriate, to understand what those who introduced the various terms associated with the structure of the plasma-sheath had in mind. We try to bring out the essence of the insights that have been gained subsequently, by quoting from the literature selectively, indicating how misunderstandings have arisen. In order to make it accessible to the generality of those currently working in low temperature plasmas we have sought to avoid mathematical complexity but retain physical insight, quoting from published work where appropriate. Nevertheless, in clarifying my own ideas I have found it necessary to do additional original work in order to give a consistent picture. In this way I have sought to bring together work in the late 1920s, the 1960s, and now mindful of the commercial importance of plasma processing, work over the past 15 years that adds to the general understanding. (topical review)

  16. Constitutive expression of the xylanase inhibitor TAXI-III delays Fusarium head blight symptoms in durum wheat transgenic plants.

    Moscetti, Ilaria; Tundo, Silvio; Janni, Michela; Sella, Luca; Gazzetti, Katia; Tauzin, Alexandra; Giardina, Thierry; Masci, Stefania; Favaron, Francesco; D'Ovidio, Renato

    2013-12-01

    Cereals contain xylanase inhibitor (XI) proteins which inhibit microbial xylanases and are considered part of the defense mechanisms to counteract microbial pathogens. Nevertheless, in planta evidence for this role has not been reported yet. Therefore, we produced a number of transgenic plants constitutively overexpressing TAXI-III, a member of the TAXI type XI that is induced by pathogen infection. Results showed that TAXI-III endows the transgenic wheat with new inhibition capacities. We also showed that TAXI-III is correctly secreted into the apoplast and possesses the expected inhibition parameters against microbial xylanases. The new inhibition properties of the transgenic plants correlate with a significant delay of Fusarium head blight disease symptoms caused by Fusarium graminearum but do not significantly influence leaf spot symptoms caused by Bipolaris sorokiniana. We showed that this contrasting result can be due to the different capacity of TAXI-III to inhibit the xylanase activity of these two fungal pathogens. These results provide, for the first time, clear evidence in planta that XI are involved in plant defense against fungal pathogens and show the potential to manipulate TAXI-III accumulation to improve wheat resistance against F. graminearum.

  17. A review of the Mycrocylus ulei Ascomycetes fungus, causative agent of South American rubber-leaf blight

    Ibonne Aydee García-Romero

    2006-07-01

    Full Text Available The Microcyclus ulei Ascomycetes fungus is the causal agent of south-American leaf blight (SALB, this being one of the most important diseases affecting the natural rubber tree (Hevea brasiliensis in Latina-America and has been responsible for numerous economic losses. This fungus has presented high physiological variability, suggesting its great adaptability. HCN tolerance has been described as being one of the mechanisms associated with its virulence. Resistant Hevea clones have been obtained by genetic improvement; however, the mechanisms associated with this are still not well known. Greater knowledge of this pathogen will lead to developing new control strategies and better understanding of the mechanisms associated with host resistance. Key words: Microcyclus ulei, SALB, Hevea brasiliensis.

  18. Embedded cladding surface thermocouples on Zircaloy-sheathed heater rods

    Wilkins, S.C.

    1977-06-01

    Titanium-sheathed Type K thermocouples embedded in the cladding wall of zircaloy-sheathed heater rods are described. These thermocouples constitute part of a program intended to characterize the uncertainty of measurements made by surface-mounted cladding thermocouples on nuclear fuel rods. Fabrication and installation detail, and laboratory testing of sample thermocouple installations are included

  19. Sheath structure transition controlled by secondary electron emission

    Schweigert, I. V.; Langendorf, S. J.; Walker, M. L. R.; Keidar, M.

    2015-04-01

    In particle-in-cell Monte Carlo collision (PIC MCC) simulations and in an experiment we study sheath formation over an emissive floating Al2O3 plate in a direct current discharge plasma at argon gas pressure 10-4 Torr. The discharge glow is maintained by the beam electrons emitted from a negatively biased hot cathode. We observe three types of sheaths near the floating emissive plate and the transition between them is driven by changing the negative bias. The Debye sheath appears at lower voltages, when secondary electron emission is negligible. With increasing applied voltage, secondary electron emission switches on and a first transition to a new sheath type, beam electron emission (BEE), takes place. For the first time we find this specific regime of sheath operation near the floating emissive surface. In this regime, the potential drop over the plate sheath is about four times larger than the temperature of plasma electrons. The virtual cathode appears near the emissive plate and its modification helps to maintain the BEE regime within some voltage range. Further increase of the applied voltage U initiates the second smooth transition to the plasma electron emission sheath regime and the ratio Δφs/Te tends to unity with increasing U. The oscillatory behavior of the emissive sheath is analyzed in PIC MCC simulations. A plasmoid of slow electrons is formed near the plate and transported to the bulk plasma periodically with a frequency of about 25 kHz.

  20. Electrospinning jet behaviors under the constraints of a sheath gas

    Yang Zhao

    2016-11-01

    Full Text Available Increasing the ejection efficiency and uniformity of nanofibers is the key to applications of electrospinning technology. In this work, a novel electrospinning spinneret with a sheath gas passageway is designed. The frictional resistance that stems from the sheath gas provides additional stretching and restriction forces on the jet. The sheath gas also reduces interference and enhances the stability of the charged jet. A bead-on-strain simulation model is built up to determine the constraint effects of the sheath gas. Simulation results show that the sheath gas decreases the motion area and increases the stretching ratio of the liquid jet. The stretching force from the sheath gas decreases the diameter and increases the uniformity of the nanofiber. As the gas pressure increases from 0 kPa to 50 kPa, the critical voltage of the jet ejection decreases from 8.4 kV to 2.5 kV, the diameter of the nanofiber deposition zone decreases from 40 cm to 10 cm, and the diameter of the nanofibers decreases from 557.97 nm to 277.73 nm. The uniformity of nanofibers can be improved significantly using a sheath gas. The sheath gas contributes to the rapid deposition of a uniform nanofibrous membrane and the industrial applications of electrospinning.

  1. Significance of rice sheath photosynthesis: Yield determination by ...

    Using high-yielding hybrid rice Liangyopeijiu (LYP9), its male parent 9311 and hybrid rice Shanyou 63 (SY63) as the experimental materials, the photosynthesis of rice sheath was studied by 14C radio-autography. The results showed that rice sheath could trap sunlight and produce photosynthates, and these ...

  2. Anode Sheath Switching in a Carbon Nanotube Arc Plasma

    Fetterman, Abe; Raitses, Yevgeny; Keidar, Michael

    2008-01-01

    The anode ablation rate is investigated as a function of anode diameter for a carbon nanotube arc plasma. It is found that anomalously high ablation occurs for small anode diameters. This result is explained by the formation of a positive anode sheath. The increased ablation rate due to this positive anode sheath could imply greater production rate for carbon nanotubes.

  3. What is the size of a floating sheath? An answer

    Voigt, Farina; Naggary, Schabnam; Brinkmann, Ralf Peter

    2016-09-01

    The formation of a non-neutral boundary sheath in front of material surfaces is universal plasma phenomenon. Despite several decades of research, however, not all related issues are fully clarified. In a recent paper, Chabert pointed out that this lack of clarity applies even to the seemingly innocuous question ``What the size of a floating sheath?'' This contribution attempts to provide an answer that is not arbitrary: The size of a floating sheath is defined as the plate separation of an equivalent parallel plate capacitor. The consequences of the definition are explored with the help of a self-consistent sheath model, and a comparison is made with other sheath size definitions. Deutsche Forschungsgemeinschaft within SFB TR 87.

  4. Effect of collisions on photoelectron sheath in a gas

    Sodha, Mahendra Singh; Mishra, S. K.

    2016-02-01

    This paper presents a study of the effect of the collision of electrons with atoms/molecules on the structure of a photoelectron sheath. Considering the half Fermi-Dirac distribution of photo-emitted electrons, an expression for the electron density in the sheath has been derived in terms of the electric potential and the structure of the sheath has been investigated by incorporating Poisson's equation in the analysis. The method of successive approximations has been used to solve Poisson's equation with the solution for the electric potential in the case of vacuum, obtained earlier [Sodha and Mishra, Phys. Plasmas 21, 093704 (2014)], being used as the zeroth order solution for the present analysis. The inclusion of collisions influences the photoelectron sheath structure significantly; a reduction in the sheath width with increasing collisions is obtained.

  5. Sheath impedance effects in very high frequency plasma experiments

    Schwarzenbach, W.; Howling, A.A.; Fivaz, M.; Brunner, S.; Hollenstein, C.

    1995-05-01

    The frequency dependence (13.56 MHz to 70 MHz) of the ion energy distribution at the ground electrode was measured by mass spectrometry in a symmetrical capacitive argon discharge. Reduced sheath impedance at Very High Frequency allows high levels of plasma power and substrate ion flux whilst maintaining low levels of ion energy and electrode voltage. The lower limit of ion bombardment energy is fixed by the sheath floating potential at high frequency, in contrast to low frequencies where only the rf voltage amplitude is determinant. The capacitive sheaths are thinner at high frequencies which accentuates the high frequency reduction in sheath impedance. It is argued that the frequency dependence of sheath impedance is responsible for the principal characteristics of Very High Frequency plasmas. The measurements are summarised by simple physical descriptions and compared with a Particle-In-Cell simulation. (author) figs., tabs., refs

  6. Epidemiological study of hazelnut bacterial blight in central Italy by using laboratory analysis and geostatistics.

    Jay Ram Lamichhane

    Full Text Available Incidence of Xanthomonas arboricola pv. corylina, the causal agent of hazelnut bacterial blight, was analyzed spatially in relation to the pedoclimatic factors. Hazelnut grown in twelve municipalities situated in the province of Viterbo, central Italy was studied. A consistent number of bacterial isolates were obtained from the infected tissues of hazelnut collected in three years (2010-2012. The isolates, characterized by phenotypic tests, did not show any difference among them. Spatial patterns of pedoclimatic data, analyzed by geostatistics showed a strong positive correlation of disease incidence with higher values of rainfall, thermal shock and soil nitrogen; a weak positive correlation with soil aluminium content and a strong negative correlation with the values of Mg/K ratio. No correlation of the disease incidence was found with soil pH. Disease incidence ranged from very low (<1% to very high (almost 75% across the orchards. Young plants (4-year old were the most affected by the disease confirming a weak negative correlation of the disease incidence with plant age. Plant cultivars did not show any difference in susceptibility to the pathogen. Possible role of climate change on the epidemiology of the disease is discussed. Improved management practices are recommended for effective control of the disease.

  7. Incorporation of Bacterial Blight Resistance Genes Into Lowland Rice Cultivar Through Marker-Assisted Backcross Breeding.

    Pradhan, Sharat Kumar; Nayak, Deepak Kumar; Pandit, Elssa; Behera, Lambodar; Anandan, Annamalai; Mukherjee, Arup Kumar; Lenka, Srikanta; Barik, Durga Prasad

    2016-07-01

    Bacterial blight (BB) of rice caused by Xanthomonas oryzae pv. oryzae is a major disease of rice in many rice growing countries. Pyramided lines carrying two BB resistance gene combinations (Xa21+xa13 and Xa21+xa5) were developed in a lowland cultivar Jalmagna background through backcross breeding by integrating molecular markers. In each backcross generation, markers closely linked to the disease resistance genes were used to select plants possessing the target genes. Background selection was continued in those plants carrying resistant genes until BC(3) generation. Plants having the maximum contribution from the recurrent parent genome were selected in each generation and hybridized with the recipient parent. The BB-pyramided line having the maximum recipient parent genome recovery of 95% was selected among BC3F1 plants and selfed to isolate homozygous BC(3)F(2) plants with different combinations of BB resistance genes. Twenty pyramided lines with two resistance gene combinations exhibited high levels of tolerance against the BB pathogen. In order to confirm the resistance, the pyramided lines were inoculated with different X. oryzae pv. oryzae strains of Odisha for bioassay. The genotypes with combination of two BB resistance genes conferred high levels of resistance to the predominant X. oryzae pv. oryzae isolates prevalent in the region. The pyramided lines showed similarity with the recipient parent with respect to major agro-morphologic traits.

  8. Changes in Cryphonectria parasitica populations affects natural biological control of chestnut blight.

    Ježić, Marin; Mlinarec, Jelena; Vuković, Rosemary; Katanić, Zorana; Krstin, Ljiljana; Nuskern, Lucija; Poljak, Igor; Idžojtić, Marilena; Tkalec, Mirta; Curkovic-Perica, Mirna

    2018-02-14

    Invasive species, especially plant pathogens have a potential to completely eradicate native plant species and remodel landscapes. Tripartite interaction among sweet chestnut, Castanea sativa, chestnut blight-causing invasive fungus, Cryphonectria parasitica, and a hyperparasitic virus, Cryphonectria parasitica hypovirus 1 (CHV1) were studied in two populations. The number of different vegetative compatibility (vc) types of C. parasitica more than doubled over the ten years, while the hypovirulence incidence dropped in one population, and slightly increased in the other one. Over the course of our short term, three year monitoring experiment, the prevalence of hypovirulent isolates obtained from monitored cankers increased slowly, i.e. more hypovirulent isolates were being obtained from the same cankers over time. Within studied cankers considerable changes in vc type and CHV1 presence were observed, indicating a highly dynamic system in which virulent and hypovirulent mycelia, sometimes of discordant vc types, often appeared together. The increase in hypovirulence prevalence did not have any observable curative effect on the cankers, and occasionally reactivation of healed cankers by new, virulent C. parasitica isolates was observed. Both, short and long term observations and revalidation of the infected plant populations are necessary to accurately estimate disease progress and formulate an adequate disease management strategy.

  9. Similarities and distinctions of CIR and Sheath

    Yermolaev, Yuri; Lodkina, Irina; Nikolaeva, Nadezhda; Yermolaev, Michael

    2016-04-01

    On the basis of OMNI data and our catalog of large scale solar wind (SW) streams during 1976-2000 [Yermolaev et al., 2009] we study the average temporal profiles for two types of compressed regions: CIR (corotating interaction region - compressed region before High Speed Stream (HSS)) and Sheath (compressed region before fast Interplanetary CMEs (ICMEs), including Magnetic Cloud (MC) and Ejecta). As have been shown by Nikolaeva et al, [2015], the efficiency of magnetic storm generation is ~50% higher for Sheath and CIR than for ICME (MC and Ejecta), i.e. reaction magnetosphere depends on type of driver. To take into account the different durations of SW types, we use the double superposed epoch analysis (DSEA) method: rescaling the duration of the interval for all types in such a manner that, respectively, beginning and end for all intervals of selected type coincide [Yermolaev et al., 2010; 2015]. Obtained data allows us to suggest that the formation of all types of compression regions has the same physical mechanism irrespective of piston (HSS or ICME) type and differences are connected with geometry and full jumps of speed in edges of compression regions. If making the natural assumption that the gradient of speed is directed approximately on normal to the piston, CIR has the largest angle between the gradient of speed and the direction of average SW speed, and ICME - the smallest angle. The work was supported by the Russian Foundation for Basic Research, projects 13-02-00158, 16-02-00125 and by Program of Presidium of the Russian Academy of Sciences. References: Nikolaeva, N. S. , Yu. I. Yermolaev, and I. G. Lodkina (2015), Modeling of the Corrected Dst* Index Temporal Profile on the Main Phase of the Magnetic Storms Generated by Different Types of Solar Wind, Cosmic Research, Vol. 53, No. 2, pp. 119-127. Yermolaev, Yu. I., N. S. Nikolaeva, I. G. Lodkina, and M. Yu. Yermolaev (2009), Catalog of Large-Scale Solar Wind Phenomena during 1976-2000, Cosmic Research

  10. Sheath rendezvous method: a novel distal protection technique during endovascular treatment of subclavian artery occlusions.

    Haraguchi, Takuya; Urasawa, Kazushi; Nakama, Tatsuya; Nakagawa, Yuya; Tan, Michinao; Koshida, Ryoji; Sato, Katsuhiko

    2016-10-01

    To describe an innovative distal protection technique, "sheath rendezvous method", during endovascular treatment for subclavian arterial occlusions. 4.5F and 6F guiding sheath were inserted from left brachial and common femoral artery, respectively. 0.014″ guidewire retrogradely passed through occlusion and into antegrade sheath to establish a pull-through system. 3.0 mm balloon was used to expand occlusion and anchor to deliver retrograde sheath into antegrade one. Both sheaths locked by balloon dilatation crossed occlusion until antegrade sheath passed over lesion. Balloon expandable stent was delivered within antegrade sheath. Sheath was removed, and stent was implanted. We obtained an excellent outcome without complications.

  11. RNA-Seq analysis reveals insight into enhanced rice Xa7-mediated bacterial blight resistance at high temperature.

    Stephen P Cohen

    Full Text Available Plant disease is a major challenge to agriculture worldwide, and it is exacerbated by abiotic environmental factors. During some plant-pathogen interactions, heat stress allows pathogens to overcome host resistance, a phenomenon which could severely impact crop productivity considering the global warming trends associated with climate change. Despite the importance of this phenomenon, little is known about the underlying molecular mechanisms. To better understand host plant responses during simultaneous heat and pathogen stress, we conducted a transcriptomics experiment for rice plants (cultivar IRBB61 containing Xa7, a bacterial blight disease resistance (R gene, that were infected with Xanthomonas oryzae, the bacterial blight pathogen of rice, during high temperature stress. Xa7-mediated resistance is unusual relative to resistance mediated by other R genes in that it functions better at high temperatures. Using RNA-Seq technology, we identified 8,499 differentially expressed genes as temperature responsive in rice cultivar IRBB61 experiencing susceptible and resistant interactions across three time points. Notably, genes in the plant hormone abscisic acid biosynthesis and response pathways were up-regulated by high temperature in both mock-treated plants and plants experiencing a susceptible interaction and were suppressed by high temperature in plants exhibiting Xa7-mediated resistance. Genes responsive to salicylic acid, an important plant hormone for disease resistance, were down-regulated by high temperature during both the susceptible and resistant interactions, suggesting that enhanced Xa7-mediated resistance at high temperature is not dependent on salicylic acid signaling. A DNA sequence motif similar to known abscisic acid-responsive cis-regulatory elements was identified in the promoter region upstream of genes up-regulated in susceptible but down-regulated in resistant interactions. The results of our study suggest that the plant

  12. Characteristics of metal sheathed thermocouples in thermowell

    Okuda, Takehiro; Nakase, Tsuyoshi; Tanabe, Yutaka; Yamada, Kunitaka; Yoshizaki, Akio; Roko, Kiyokazu

    1987-01-01

    Static and dynamic characteristics of thermowell type thermocouples which are planned to be used for the High-Temperature engineering Test Reactor (HTTR) have been investigated. A mock-up test section was installed in Kawasaki's Helium Test Loop (KH-200). Thermal characteristics tests were carried out under the 600 ∼ 1000 deg C temperature conditions. The test section was equipped with four types sheathed thermocouples; the well type, the non well type, and ones with and without the thermal radiation shielding plate. The measured temperature by the well type thermocouples with the shielding plate was only about 1.3 deg C higher than the one without the shielding plate at gas temperature 990 deg C. The measured time constant of the well type thermocouples was about 7 seconds in the condition of the heat transfer coefficient 1600 Kcal/m 2 h deg C on the well surface, and coincided with the calculated one by ''TRUMP'' code. (author)

  13. Benign nerve sheath tumor of stomach

    Chaudry, N.U.; Zafar, S.; Haque, I.U.

    2007-01-01

    Gastrointestinal mesenchymal tumors are a group of tumors, which originate from the mesenchymal stem cells of the gastrointestinal tract. Gastric schwannoma is a very rare gastrointestinal mesenchymal tumor, which represents only 0.2% of all gastric tumors and 4% of all benign gastric neoplasms. We report a 55 years old lady who suffered from pain epigastrium, vomiting, occasionally with blood, loss of appetite and weight loss. Endoscopic examination showed a round submucosal tumor with a central ulceration along the greater curvature of the stomach. The pathological examination revealed a picture of spindle cell tumor. Immunohistochemical stain was strongly positive for S-100 protein stain, and non-reactive for CD34, CD117, consistent with benign nerve sheath tumor of stomach i.e. gastric schwannoma. (author)

  14. Estimation of radiation losses from sheathed thermocouples

    Roberts, I.L.; Coney, J.E.R.; Gibbs, B.M.

    2011-01-01

    Thermocouples are often used for temperature measurements in heat exchangers. However if the radiation losses from a thermocouple in a high temperature gas flow to colder surroundings are ignored significant errors can occur. Even at moderate temperature differences, these can be significant. Prediction of radiation losses from theory can be problematic, especially in situations where there are large variations in the measured temperatures as the emissivity and radiative heat transfer coefficient of the thermocouple are not constant. The following approach combines experimental results with established empirical relationships to estimate losses due to radiation in an annular heat exchanger at temperatures up to 950 o C. - Highlights: → Sheathed thermocouples are often used to measure temperatures in heat exchangers. → Errors are introduced if radiation losses are ignored. → Radiation losses are environment specific and may be significant. → Experimental and theoretical methods are used to estimate losses. → Hot side maximum temperature 950 o C.

  15. Fire Blight Control: The Struggle Goes On. A Comparison of Different Fire Blight Control Methods in Switzerland with Respect to Biosafety, Efficacy and Durability.

    Gusberti, Michele; Klemm, Urs; Meier, Matthias S; Maurhofer, Monika; Hunger-Glaser, Isabel

    2015-09-11

    Fire blight (FB), caused by Erwinia amylovora, is one of the most important pome fruit pathogens worldwide. To control this devastating disease, various chemical and biological treatments are commonly applied in Switzerland, but they fail to keep the infection at an acceptable level in years of heavy disease pressure. The Swiss authorities therefore currently allow the controlled use of the antibiotic streptomycin against FB in years that are predicted to have heavy infection periods, but only one treatment per season is permitted. Another strategy for controlling Erwinia is to breed resistant/tolerant apple cultivars. One way of accelerating the breeding process is to obtain resistant cultivars by inserting one or several major resistance genes, using genetic engineering. To date, no study summarizing the impact of different FB control measures on the environment and on human health has been performed. This study consequently aims to compare different disease-control measures (biological control, chemical control, control by antibiotics and by resistant/tolerant apple cultivars obtained through conventional or molecular breeding) applied against E. amylovora, considering different protection goals (protection of human health, environment, agricultural diversity and economic interest), with special emphasis on biosafety aspects. Information on each FB control measure in relation to the specified protection goal was assessed by literature searches and by interviews with experts. Based on our results it can be concluded that the FB control measures currently applied in Switzerland are safe for consumers, workers and the environment. However, there are several gaps in our knowledge of the human health and environmental impacts analyzed: data are missing (1) on long term studies on the efficacy of most of the analyzed FB control measures; (2) on the safety of operators handling streptomycin; (3) on residue analyses of Equisetum plant extract, the copper and aluminum

  16. The Sheath-less Planar Langmuir Probe

    Cooke, D. L.

    2017-12-01

    The Langmuir probe is one of the oldest plasma diagnostics, provided the plasma density and species temperature from analysis of a current-voltage curve as the voltage is swept over a practically chosen range. The analysis depends on a knowledge or theory of the many factors that influence the current-voltage curve including, probe shape, size, nearby perturbations, and the voltage reference. For applications in Low Earth Orbit, the Planar Langmuir Probe, PLP, is an attractive geometry because the ram ion current is very constant over many Volts of a sweep, allowing the ion density and electron temperature to be determined independently with the same instrument, at different points on the sweep. However, when the physical voltage reference is itself small and electrically floating as with a small spacecraft, the spacecraft and probe system become a double probe where the current collection theory depends on the interaction of the spacecraft with the plasma which is generally not as simple as the probe itself. The Sheath-less PLP, SPLP, interlaces on a single ram facing surface, two variably biased probe elements, broken into many small and intertwined segments on a scale smaller than the plasma Debye length. The SPLP is electrically isolated from the rest of the spacecraft. For relative bias potentials of a few volts, the ion current to all segments of each element will be constant, while the electron currents will vary as a function of the element potential and the electron temperature. Because the segments are small, intertwined, and floating, the assembly will always present the same floating potential to the plasma, with minimal growth as a function of voltage, thus sheath-less and still planar. This concept has been modelled with Nascap, and tested with a physical model inserted into a Low Earth Orbit-like chamber plasma. Results will be presented.

  17. The genetic variance of resistance in M3 lines of rice against leaf blight disease

    Mugiono

    1979-01-01

    Seeds of Pelita I/1 rice variety were irradiated with 20, 30, 40 and 50 krad of gamma rays from a 60 Co source. Plants of M 3 lines were inoculated with bacterial leaf blight, Xanthomonas oryzae (Uzeda and Ishiyama) Downson, using clipping method. The coefficient of genetic variability of resistance against leaf blight disease increased with increasing dose. Highly significant difference in the genetic variance of resistance were found between the treated samples and the control. Dose of 20 krad gave good probability for selection of plants resistant against leaf blight disease. (author)

  18. Use of guiding sheaths in peroral fluoroscopic gastroduodenal stent placement

    Bae, Jae-Ik; Shin, Ji Hoon; Song, Ho-Young; Yoon, Chang Jin; Nam, Deok Ho; Choi, Won-Chan; Lim, Jin-Oh

    2005-01-01

    Our purpose was to assess the safety and usefulness of guiding sheaths in peroral fluoroscopic gastroduodenal stent placement. Two types of guiding sheath were made from straight polytetrafluoroethylene tubes. Type A was 80 cm in length, 4 mm in outer diameter and 3 mm in inner diameter. Type B was 70 cm in length, 6 mm in outer diameter and 5 mm in inner diameter. The type A sheath was used in 18 patients in whom a catheter-guide wire combination failed to pass through a stricture. The type B sheath was used in 22 patients in whom a stent delivery system failed to pass through the stricture due to loop formation within the gastric lumen. The overall success rate for guiding a catheter-guide wire through a stricture after using the type A sheath was 89%. The overall success rate for passing a stent delivery system through a stricture after using the type B sheath was 100%. All procedures were tolerated by the patients without any significant complications. The guiding sheaths were safe and useful in peroral fluoroscopic gastroduodenal stent placement. (orig.)

  19. ALINE: A device dedicated to understanding radio-frequency sheaths

    S. Devaux

    2017-08-01

    Full Text Available In fusion devices, radiofrequency (RF antennas are used for heating the plasma. Those antennas and the plasma interact with each other through the so-called RF sheaths, layers of plasma where the quasi-neutrality breaks down and large electric fields arise. Among the effects of RF sheaths, there is the enhancement of the particles and energy fluxes toward the surface of the antenna, which in turn generate hot spots and release impurities, which are both deleterious for plasma operations. RF sheaths comprehension stumbles on the difficulty to achieve in situ measurements of the sheath properties, as scrape-off layer plasmas are a harsh environment. The very goal of the ALINE device is to tackle this issue and to fulfil the blank between numerical simulations and full-scale experiment by providing measurements within the RF sheaths in a controlled environment. In this paper we report on the latest experimental results from ALINE, in which a cylindrical Langmuir probe mounted on a remotely controlled and programmable arm allows for plasma characterizations in the three dimensions of space around the stainless steel antenna, including the sheath. We present a series of density and potential profiles and three dimension (3D maps in the plasma surrounding a stainless-steel RF antenna as well as in the sheath itself, for unmagnetized and magnetized plasmas.

  20. Abiotic Deposition of Fe Complexes onto Leptothrix Sheaths

    Kunoh, Tatsuki; Hashimoto, Hideki; McFarlane, Ian R.; Hayashi, Naoaki; Suzuki, Tomoko; Taketa, Eisuke; Tamura, Katsunori; Takano, Mikio; El-Naggar, Mohamed Y.; Kunoh, Hitoshi; Takada, Jun

    2016-01-01

    Bacteria classified in species of the genus Leptothrix produce extracellular, microtubular, Fe-encrusted sheaths. The encrustation has been previously linked to bacterial Fe oxidases, which oxidize Fe(II) to Fe(III) and/or active groups of bacterial exopolymers within sheaths to attract and bind aqueous-phase inorganics. When L. cholodnii SP-6 cells were cultured in media amended with high Fe(II) concentrations, Fe(III) precipitates visibly formed immediately after addition of Fe(II) to the medium, suggesting prompt abiotic oxidation of Fe(II) to Fe(III). Intriguingly, these precipitates were deposited onto the sheath surface of bacterial cells as the population was actively growing. When Fe(III) was added to the medium, similar precipitates formed in the medium first and were abiotically deposited onto the sheath surfaces. The precipitates in the Fe(II) medium were composed of assemblies of globular, amorphous particles (ca. 50 nm diameter), while those in the Fe(III) medium were composed of large, aggregated particles (≥3 µm diameter) with a similar amorphous structure. These precipitates also adhered to cell-free sheaths. We thus concluded that direct abiotic deposition of Fe complexes onto the sheath surface occurs independently of cellular activity in liquid media containing Fe salts, although it remains unclear how this deposition is associated with the previously proposed mechanisms (oxidation enzyme- and/or active group of organic components-involved) of Fe encrustation of the Leptothrix sheaths. PMID:27271677

  1. Abiotic Deposition of Fe Complexes onto Leptothrix Sheaths

    Tatsuki Kunoh

    2016-06-01

    Full Text Available Bacteria classified in species of the genus Leptothrix produce extracellular, microtubular, Fe-encrusted sheaths. The encrustation has been previously linked to bacterial Fe oxidases, which oxidize Fe(II to Fe(III and/or active groups of bacterial exopolymers within sheaths to attract and bind aqueous-phase inorganics. When L. cholodnii SP-6 cells were cultured in media amended with high Fe(II concentrations, Fe(III precipitates visibly formed immediately after addition of Fe(II to the medium, suggesting prompt abiotic oxidation of Fe(II to Fe(III. Intriguingly, these precipitates were deposited onto the sheath surface of bacterial cells as the population was actively growing. When Fe(III was added to the medium, similar precipitates formed in the medium first and were abiotically deposited onto the sheath surfaces. The precipitates in the Fe(II medium were composed of assemblies of globular, amorphous particles (ca. 50 nm diameter, while those in the Fe(III medium were composed of large, aggregated particles (≥3 µm diameter with a similar amorphous structure. These precipitates also adhered to cell-free sheaths. We thus concluded that direct abiotic deposition of Fe complexes onto the sheath surface occurs independently of cellular activity in liquid media containing Fe salts, although it remains unclear how this deposition is associated with the previously proposed mechanisms (oxidation enzyme- and/or active group of organic components-involved of Fe encrustation of the Leptothrix sheaths.

  2. Farris-Tang retractor in optic nerve sheath decompression surgery.

    Spiegel, Jennifer A; Sokol, Jason A; Whittaker, Thomas J; Bernard, Benjamin; Farris, Bradley K

    2016-01-01

    Our purpose is to introduce the use of the Farris-Tang retractor in optic nerve sheath decompression surgery. The procedure of optic nerve sheath fenestration was reviewed at our tertiary care teaching hospital, including the use of the Farris-Tang retractor. Pseudotumor cerebri is a syndrome of increased intracranial pressure without a clear cause. Surgical treatment can be effective in cases in which medical therapy has failed and disc swelling with visual field loss progresses. Optic nerve sheath decompression surgery (ONDS) involves cutting slits or windows in the optic nerve sheath to allow cerebrospinal fluid to escape, reducing the pressure around the optic nerve. We introduce the Farris-Tang retractor, a retractor that allows for excellent visualization of the optic nerve sheath during this surgery, facilitating the fenestration of the sheath and visualization of the subsequent cerebrospinal fluid egress. Utilizing a medial conjunctival approach, the Farris-Tang retractor allows for easy retraction of the medial orbital tissue and reduces the incidence of orbital fat protrusion through Tenon's capsule. The Farris-Tang retractor allows safe, easy, and effective access to the optic nerve with good visualization in optic nerve sheath decompression surgery. This, in turn, allows for greater surgical efficiency and positive patient outcomes.

  3. The Tubular Sheaths Encasing Methanosaeta thermophila Filaments Are Functional Amyloids.

    Dueholm, Morten S; Larsen, Poul; Finster, Kai; Stenvang, Marcel R; Christiansen, Gunna; Vad, Brian S; Bøggild, Andreas; Otzen, Daniel E; Nielsen, Per Halkjær

    2015-08-14

    Archaea are renowned for their ability to thrive in extreme environments, although they can be found in virtually all habitats. Their adaptive success is linked to their unique cell envelopes that are extremely resistant to chemical and thermal denaturation and that resist proteolysis by common proteases. Here we employ amyloid-specific conformation antibodies and biophysical techniques to show that the extracellular cell wall sheaths encasing the methanogenic archaea Methanosaeta thermophila PT are functional amyloids. Depolymerization of sheaths and subsequent MS/MS analyses revealed that the sheaths are composed of a single major sheath protein (MspA). The amyloidogenic nature of MspA was confirmed by in vitro amyloid formation of recombinant MspA under a wide range of environmental conditions. This is the first report of a functional amyloid from the archaeal domain of life. The amyloid nature explains the extreme resistance of the sheath, the elastic properties that allow diffusible substrates to penetrate through expandable hoop boundaries, and how the sheaths are able to split and elongate outside the cell. The archaeal sheath amyloids do not share homology with any of the currently known functional amyloids and clearly represent a new function of the amyloid protein fold. © 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

  4. Candidate Genes for Aggressiveness in a Natural Fusarium culmorum Population Greatly Differ between Wheat and Rye Head Blight

    Valheria Castiblanco

    2018-01-01

    Full Text Available Fusarium culmorum is one of the species causing Fusarium head blight (FHB in cereals in Europe. We aimed to investigate the association between the nucleotide diversity of ten F. culmorum candidate genes and field ratings of aggressiveness in winter rye. A total of 100 F. culmorum isolates collected from natural infections were phenotyped for FHB at two locations and two years. Variance components for aggressiveness showed significant isolate and isolate-by-environment variance, as expected for quantitative host-pathogen interactions. Further analysis of the isolate-by-environment interaction revealed the dominant role of the isolate-by-year over isolate-by-location interaction. One single-nucleotide polymorphism (SNP in the cutinase (CUT gene was found to be significantly (p < 0.001 associated with aggressiveness and explained 16.05% of the genotypic variance of this trait in rye. The SNP was located 60 base pairs before the start codon, which suggests a role in transcriptional regulation. Compared to a previous study in winter wheat with the same nucleotide sequences, a larger variation of pathogen aggressiveness on rye was found and a different candidate gene was associated with pathogen aggressiveness. This is the first report on the association of field aggressiveness and a host-specific candidate gene codifying for a protein that belongs to the secretome in F. culmorum.

  5. Ultrasonographic findings of pilar sheath acanthoma: A case report

    Kang, Dong Joo; Lee, Sun Joo; Kim, Seong Jin [Inje University College of Medicine, Busan Paik Hospital, Busan (Korea, Republic of)

    2017-08-15

    Pilar sheath acanthoma is a rare benign follicular hamartoma that presents with a central sinus containing keratinous material and is lined by epithelium. It typically occurs on the face, especially on the upper lip and forehead. In our case, the ultrasound (US) feature of pilar sheath acanthoma revealed a well-defined, oval hypoechoic nodule with hypoechoic capping within the dermis over the medial aspect of the calf. To the best of our knowledge, despite many reports on the clinicopathological aspects of pilar sheath acanthoma, this entity has not been well described in the radiologic literature, and US findings have not been documented.

  6. Experimental test of models of radio-frequency plasma sheaths

    Sobolewski, M.A.

    1997-01-01

    The ion current and sheath impedance were measured at the radio-frequency-powered electrode of an asymmetric, capacitively coupled plasma reactor, for discharges in argon at 1.33 endash 133 Pa. The measurements were used to test the models of the radio frequency sheath derived by Lieberman [IEEE Trans. Plasma Sci. 17, 338 (1989)] and Godyak and Sternberg [Phys. Rev. A 42, 2299 (1990)], and establish the range of pressure and sheath voltage in which they are valid. copyright 1997 American Institute of Physics

  7. Dynamics of Dust in a Plasma Sheath with Magnetic Field

    Duan Ping; Liu Jinyuan; Gon Ye; Liu Yue; Wang Xiaogang

    2007-01-01

    Dynamics of dust in a plasma sheath with a magnetic field was investigated using a single particle model. The result shows that the radius, initial position, initial velocity of the dust particles and the magnetic field do effect their movement and equilibrium position in the plasma sheath. Generally, the dust particles with the same size, whatever original velocity and position they have, will locate at the same position in the end under the net actions of electrostatic, gravitational, neutral collisional, and Lorentz forces. But the dust particles will not locate in the plasma sheath if their radius is beyond a certain value

  8. Comparison of the transcriptomes of American chestnut (Castanea dentata and Chinese chestnut (Castanea mollissima in response to the chestnut blight infection

    Wheeler Nicholas

    2009-05-01

    Full Text Available Abstract Background1471-2229-9-51 American chestnut (Castanea dentata was devastated by an exotic pathogen in the beginning of the twentieth century. This chestnut blight is caused by Cryphonectria parasitica, a fungus that infects stem tissues and kills the trees by girdling them. Because of the great economic and ecological value of this species, significant efforts have been made over the century to combat this disease, but it wasn't until recently that a focused genomics approach was initiated. Prior to the Genomic Tool Development for the Fagaceae project, genomic resources available in public databases for this species were limited to a few hundred ESTs. To identify genes involved in resistance to C. parasitica, we have sequenced the transcriptome from fungal infected and healthy stem tissues collected from blight-sensitive American chestnut and blight-resistant Chinese chestnut (Castanea mollissima trees using ultra high throughput pyrosequencing. Results We produced over a million 454 reads, totaling over 250 million bp, from which we generated 40,039 and 28,890 unigenes in total from C. mollissima and C. dentata respectively. The functions of the unigenes, from GO annotation, cover a diverse set of molecular functions and biological processes, among which we identified a large number of genes associated with resistance to stresses and response to biotic stimuli. In silico expression analyses showed that many of the stress response unigenes were expressed more in canker tissues versus healthy stem tissues in both American and Chinese chestnut. Comparative analysis also identified genes belonging to different pathways of plant defense against biotic stresses that are differentially expressed in either American or Chinese chestnut canker tissues. Conclusion Our study resulted in the identification of a large set of cDNA unigenes from American chestnut and Chinese chestnut. The ESTs and unigenes from this study constitute an important

  9. Integrating cultural control methods for tomato late blight (Phytophthora infestans) in Uganda

    Tumwine, J.; Frinking, H.D.; Jeger, M.J.

    2002-01-01

    Cultural control measures against tomato late blight (Phytophthora infestans) were evaluated in six field experiments over 3 years in Uganda. Each experiment included sanitation (removal of diseased plant tissues), fungicide (mancozeb) application, and an untreated control, as standard treatments.

  10. Zircaloy sheathed thermocouples for PWR fuel rod temperature measurements

    Anderson, J.V.; Wesley, R.D.; Wilkins, S.C.

    1979-01-01

    Small diameter zircaloy sheathed thermocouples have been developed by EG and G Idaho, Inc., at the Idaho National Engineering Laboratory. Surface mounted thermocouples were developed to measure the temperature of zircaloy clad fuel rods used in the Thermal Fuels Behavior Program (TFBP), and embedded thermocouples were developed for use by the Loss-of-Fluid Test (LOFT) Program for support tests using zircaloy clad electrically heated nuclear fuel rod simulators. The first objective of this developmental effort was to produce zircaloy sheathed thermocouples to replace titanium sheathed thermocouples and thereby eliminate the long-term corrosion of the titanium-to-zircaloy attachment weld. The second objective was to reduce the sheath diameter to obtain faster thermal response and minimize cladding temperature disturbance due to thermocouple attachment

  11. significance of rice sheath photosynthesis: yield determination by c ...

    ACSS

    1State Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha 410125, P.R. China. 2School of ... for contribution rates of sheath photosynthesis to economical yield. ..... related processes during ripening in rice plants.

  12. Malignant Peripheral Nerve Sheath Tumour of the Maxilla

    Puja Sahai

    2014-01-01

    Full Text Available A 38-year-old man was diagnosed with malignant peripheral nerve sheath tumour of the maxilla. He was treated with total maxillectomy. Histopathological examination of the resected specimen revealed a close resection margin. The tumour was of high grade with an MIB-1 labelling index of almost 60%. At six weeks following the surgery, he developed local tumour relapse. The patient succumbed to the disease at five months from the time of diagnosis. The present report underlines the locally aggressive nature of malignant peripheral nerve sheath tumour of the maxilla which necessitates an early therapeutic intervention. A complete resection with clear margins is the most important prognostic factor for malignant peripheral nerve sheath tumour in the head and neck region. Adjuvant radiotherapy may be considered to improve the local control. Future research may demarcate the role of targeted therapy for patients with malignant peripheral nerve sheath tumour.

  13. Bilateral giant cell tumor of tendon sheath of tendoachilles

    Soma Datta

    2014-01-01

    Full Text Available Giant cell tumor of tendon sheath arises from the synovium of tendon sheaths, joints, or bursae, mostly affects adults between 30 and 50 years of age, and is slightly more common in females. We report the case of a 32-years-old male presenting with pain in both ankles without any history of trauma. On clinical examination, tenderness on both tendoachilles and local thickening were observed. Ultrasonography showed thickening of local tendinous area with increase in anteroposterior diameter, and Doppler demonstrated increased flow in peritendinous area. MRI findings showed that most of the tumor had intermediate signal intensity and portions of the tumor had low signal intensity. Fine needle aspiration cytology confirmed the diagnosis of giant cell tumor of tendon sheath. Excision biopsy was done with no recurrence on five month follow-up. Review of literature did not reveal any similar result; so, bilateral giant cell tumor of tendon sheath of tendoachilles is a rare presentation.

  14. Measure Guideline: Guidance on Taped Insulating Sheathing Drainage Planes

    Grin, A. [Building Science Corporation, Somerville, MA (United States); Lstiburek, J. [Building Science Corporation, Somerville, MA (United States)

    2014-09-01

    The goal of this research is to provide durable and long-term water management solutions using exterior insulating sheathing as part of the water management system. It is possible to tape or seal the joints in insulating sheathing to create a drainage plane and even an air control layer. There exists the material durability component of the tape as well as the system durability component being the taped insulating sheathing as the drainage plane. This measure guideline provides best practice and product recommendations from the interviewed contractors and homebuilders who collectively have a vast amount of experience. Three significant issues were discussed with the group, which are required to make taped insulating sheathing a simple, long-term, and durable drainage plane: horizontal joints should be limited or eliminated wherever possible; where a horizontal joint exists use superior materials; and frequent installation inspection and regular trade training are required to maintain proper installation.

  15. Stability of the Tonks–Langmuir discharge pre-sheath

    Tskhakaya, D. D. [Fusion@ÖAW, Institute of Applied Physics, TU Wien, Wiedner Hauptstraße 8-10, 1040 Vienna (Austria); Kos, L. [LECAD Laboratory, Faculty of Mechanical Engineering, University of Ljubljana, SI-1000 Ljubljana (Slovenia); Tskhakaya, D. [Fusion@ÖAW, Institute of Applied Physics, TU Wien, Wiedner Hauptstraße 8-10, 1040 Vienna (Austria); Institute for Theoretical Physics, University of Innsbruck, A-6020 Innsbruck (Austria)

    2016-03-15

    The article formulates the stability problem of the plasma sheath in the Tonks–Langmuir discharge. Using the kinetic description of the ion gas, i.e., the stability of the potential shape in the quasi-neutral pre-sheath regarding the high and low frequency, the perturbations are investigated. The electrons are assumed to be Maxwell–Boltzmann distributed. Regarding high-frequency perturbations, the pre-sheath is shown to be stable. The stability problem regarding low-frequency perturbations can be reduced to an analysis of the “diffusion like” equation, which results in the instability of the potential distribution in the pre-sheath. By means of the Particle in Cell simulations, also the nonlinear stage of low frequency oscillations is investigated. Comparing the figure obtained with the figure for linear stage, one can find obvious similarity in the spatial-temporal behavior of the potential.

  16. Artificial neural network for prediction of the area under the disease progress curve of tomato late blight

    Daniel Pedrosa Alves

    Full Text Available ABSTRACT: Artificial neural networks (ANN are computational models inspired by the neural systems of living beings capable of learning from examples and using them to solve problems such as non-linear prediction, and pattern recognition, in addition to several other applications. In this study, ANN were used to predict the value of the area under the disease progress curve (AUDPC for the tomato late blight pathosystem. The AUDPC is widely used by epidemiologic studies of polycyclic diseases, especially those regarding quantitative resistance of genotypes. However, a series of six evaluations over time is necessary to obtain the final area value for this pathosystem. This study aimed to investigate the utilization of ANN to construct an AUDPC in the tomato late blight pathosystem, using a reduced number of severity evaluations. For this, four independent experiments were performed giving a total of 1836 plants infected with Phytophthora infestans pathogen. They were assessed every three days, comprised six opportunities and AUDPC calculations were performed by the conventional method. After the ANN were created it was possible to predict the AUDPC with correlations of 0.97 and 0.84 when compared to conventional methods, using 50 % and 67 % of the genotype evaluations, respectively. When using the ANN created in an experiment to predict the AUDPC of the other experiments the average correlation was 0.94, with two evaluations, 0.96, with three evaluations, between the predicted values of the ANN and they were observed in six evaluations. We present in this study a new paradigm for the use of AUDPC information in tomato experiments faced with P. infestans. This new proposed paradigm might be adapted to different pathosystems.

  17. Properties of leaves particleboard for sheathing application

    Nuryawan, Arif; Rahmawaty

    2018-03-01

    Manufacturing particleboard (PB) made of leaves was carried out to make non-structural building components, such as insulation, partition, wall, and sheathing. Raw materials used dry leaves originated from plantation (palm oil leaves) and forest plantation (magahony leaves). The adhesive used was interior type thermosetting commercial resins, namely 10% urea-formaldehyde (UF) based on oven dry leaves. Hardener used for UF resin was 1% and 3% ammonium chloride (NH4Cl) 20% (w/w), respectively. Technically, the target density of PB was 0.8 g/cm3 with the dimension’s size of (250 x 250 x 10) mm3. The pressure, temperature, and time of pressing of the hot press were 25 kgf/cm2, 120C, and 10 minutes, respectively. After conditioning for one week, the PB then was evaluated their physical and mechanical properties according to Japanese Industrial Standard (JIS) A 5908 (2003). Results of this work showed: 1) Both types of PB (palm oil and mahagony leaves) were feasible to be produced for non-structural applications; 2) Addition of hardener enhanced the physical and mechanical properties of PB; 3) It was recommended to enhance the performance of the PB by manipulation of the raw materials and the design.

  18. Axial sheath dynamics in a plasma focus

    Soliman, H.M.; El-Khalafawy, T.A.; Masoud, M.M.

    1990-01-01

    This paper presents the result of investigation with a 10 kJ Mather type plasma focus. It is operated in hydrogen gas at ambient pressure of 0.15--1 torr and charging voltage of 8--11 kV. Radial distribution of the current sheath density with axial distance has been estimated. Plasma rotation in the expansion chamber in the absence of external magnetic field has been detected. A plasma flare from the plasma focus region propagating in the radial direction has been observed. Streak photography shows two plasma streams flowing simultaneously out of the muzzle. The mean energy of the electron beam ejected from the pinch region of the focused plasma, was measured by retarding field analyzer to be 0.32 keV. The electron temperature of the plasma focus at peak compression was determined by measuring the X-ray intensity as a function of absorber thickness at a distance of 62 cm from the focus. The electron temperature has been found to 3 keV

  19. Contrast material filling of the peroneal tendon sheath

    Zadravecz, Gy.; Grexa, E.

    1981-01-01

    In case of complaints after fracture of the calcaneus the common sheath of the peroneus tendons was filled up with contrast material. The tendon sheath was punctured Oehind the external ankle. The three-directional radiograms clearly showed the dislocation and compression of the tendons, caused by the exostosis of the calcaneus. The concomitant tendovaginitis caused the complaints. This alteration was observed in 11% of all the calcaneus fractures. (L.E.)

  20. Cell Based Meniscal Repair Using an Aligned Bioactive Nanofibrous Sheath

    2017-07-01

    to subsequently guide tissue regeneration , for example, by seeded tissue progenitor cells . To achieve this objective, the first step is to develop...AWARD NUMBER: W81XWH-15-1-0104 TITLE: Cell -Based Meniscal Repair Using an Aligned Bioactive Nanofibrous Sheath PRINCIPAL INVESTIGATOR...SUBTITLE 5a. CONTRACT NUMBER Cell -Based Meniscal Repair Using an Aligned Bioactive Nanofibrous Sheath 5b. GRANT NUMBER W81XWH-15-1-0104 5c. PROGRAM

  1. Composition of the sheath produced by the green alga Chlorella sorokiniana.

    Watanabe, K; Imase, M; Sasaki, K; Ohmura, N; Saiki, H; Tanaka, H

    2006-05-01

    To investigate the chemical characterization of the mucilage sheath produced by Chlorella sorokiniana. Algal mucilage sheath was hydrolysed with NaOH, containing EDTA. The purity of the hydrolysed sheath was determined by an ATP assay. The composition of polysaccharide in the sheath was investigated by high-performance anion-exchange chromatography with pulsed amperometric detection. Sucrose, galacturonic acid, xylitol, inositol, ribose, mannose, arabinose, galactose, rhamnose and fructose were detected in the sheath as sugar components. Magnesium was detected in the sheath as a divalent cation using inductively coupled argon plasma. The sheath matrix also contained protein. It appears that the sheath is composed of sugars and metals. Mucilage sheath contains many kinds of saccharides that are produced as photosynthetic metabolites and divalent cations that are contained in the culture medium. This is the first report on chemical characterization of the sheath matrix produced by C. sorokiniana.

  2. Cultural Heritage in the Gulf: Blight or Blessing?

    Djamel Boussaa

    2014-12-01

    Full Text Available In the Gulf and after gaining independence in the 1960s and 1970s many cities witnessed a staggering rapid urban growth. The urban centers, which formed the central parts of these cities, underwent continuous pressures of destruction and redevelopment. A large number of these centers have been often demolished and replaced by alien imported high-rise buildings. The urban cores which escaped complete demolition have survived as isolated pockets in the middle of hybrid environments. This dilemma raises important questions; is this surviving cultural heritage blight or blessing? Is it "blight" and obstacle that stifles our cities from moving forward to aspire for a bright and prosperous future, or is it "blessing" an asset that can form a major catalyst to promote our cities while maintaining strong roots with their past? Accordingly, what should be the future of these surviving historic centers? Will they be demolished to pave way for more ambitious growth or can they be conserved and sustained for present and future generations? Will the historic city, the heart of urban life and the main protector of our cities identities, survive and continue to be places for living within the emerging global cities of today and tomorrow? This paper attempts to highlight the importance of dealing with the conservation and development issue, by raising and discussing the following question: How can our cultural heritage be a setting of appropriate conservation and development in the emerging global environments? In order to discuss this issue, three historic cities from the Gulf; Old Dubai in UAE, Old Jeddah in Saudi Arabia and Old Doha in Qatar will form the setting of this research.

  3. Effect of aqueous vitamin B on the growth of blister blight pathogen, Exobasidium vexans

    Hideyuki Nagao

    2012-12-01

    Full Text Available The effect of three aqueous solution of biotin, thiamine and calcium pantothenate, on the growth of Exobasidiumvexans was examined in vitro. The germination process of basidiospores of E. vexans differed from those of the otherExobasidium species. Basidiospore germination commenced after 19.5 hr incubation and chlamydospore-like bodies wereformed after 96 hr of incubation. Addition of biotin, calcium pantothenate, and thiamine to Difco PDA and Czapek’s mediumdid not affect the proportion of germinating basidiospores. The length of germ tubes was enhanced only by addition ofthiamine in the media. Larger size germ tubes (thick germ tubes were occasionally observed among the ordinary hyphae.Most germlings of basidiospores developed chlamydospore-like bodies or autolysed on the media. Thick germ tubesfrequently appeared on the calcium pantothenate amended media and developed into a colony when these hyphae weretransferred to new calcium pantothenate amended media. However, further transfer of colonies did not successfully bring anew colony to grow on the calcium pantothenate amended media. Vitamin B5, calcium pantothenate, was only partially effective in generating the thick germ tubes and to induce the initial colony formation, whereas amendment of biotin and thiamineto the media did not induce visible colony growth.

  4. Biology of the fire blight pathogen Erwinia amylovora in oligotrophic environments: survival responses and virulence

    Delgado Santander, Ricardo

    2016-01-01

    Erwinia amylovora es una bacteria fitopatógena de la familia Enterobacteriaceae, responsable del fuego bacteriano de las rosáceas. Los efectos destructivos de este patógeno sobre frutos, flores y prácticamente todos los órganos de las plantas hospedadoras afectadas constituyen una amenaza importante para la producción de pera y manzana, y suponen graves pérdidas económicas anuales en todo el mundo. E. amylovora está clasificada como un organismo de cuarentena en la Unión Europea y en otros pa...

  5. Studies of irradiated zircaloy fuel sheathing using XPS

    Chan, P.K.; Irving, K.G.; Hocking, W.H.; Duclos, A.M.; Gerwing, A.F.

    1995-01-01

    The preliminary results reported here support the hypothesis that CANLUB graphite coating reduces the rate at which oxygen can react with fuel sheathing. X-ray photoelectron spectroscopic (XPS) characterization of Zircaloy sheathing obtained from extended-burnup Bruce-type elements (BDL-406-XY (555 MW.h/kgU) and BDL-406-AAH (731 MW.h/kgU)) irradiated in NRU indicates that CANLUB may reduce fuel sheath oxidation, and hence that fission-liberated oxygen may remain in the fuel. Chemical shifts in the Zr 3d spectra suggest that a stoichiometric (ZrO 2 ) oxide film was formed only on Zircaloy in direct contact with fuel. Particulate fuel adhering to the sheath was also determined to be systematically more oxidized on surfaces with CANLUB than on those without it. The unique association of tin on sheathing specimens with the non-CANLUB-coated specimens might also suggest that the tin had segregated from the sheathing. It must be emphasized that further experiments are required to better define the effect of CANLUB on fuel oxidation. (author). 14 refs., 1 tab., 3 figs

  6. Effects of emitted electron temperature on the plasma sheath

    Sheehan, J. P.; Kaganovich, I. D.; Wang, H.; Raitses, Y.; Sydorenko, D.; Hershkowitz, N.

    2014-01-01

    It has long been known that electron emission from a surface significantly affects the sheath surrounding that surface. Typical fluid theory of a planar sheath with emitted electrons assumes that the plasma electrons follow the Boltzmann relation and the emitted electrons are emitted with zero energy and predicts a potential drop of 1.03T e /e across the sheath in the floating condition. By considering the modified velocity distribution function caused by plasma electrons lost to the wall and the half-Maxwellian distribution of the emitted electrons, it is shown that ratio of plasma electron temperature to emitted electron temperature significantly affects the sheath potential when the plasma electron temperature is within an order of magnitude of the emitted electron temperature. When the plasma electron temperature equals the emitted electron temperature the emissive sheath potential goes to zero. One dimensional particle-in-cell simulations corroborate the predictions made by this theory. The effects of the addition of a monoenergetic electron beam to the Maxwellian plasma electrons were explored, showing that the emissive sheath potential is close to the beam energy only when the emitted electron flux is less than the beam flux

  7. Plasma Sheath Behavior in a Coaxial Discharge Device

    EL-Aragi, G.; Soliman, H.M.; Masoud, M.M.

    2001-01-01

    The behavior of the plasma sheath has been studied experimentally and theoretically for 3 kJ coaxial discharge device. The discharge takes place in argon gas with pressure of 0.8 mbar. The experiments are conducted with a 10 kV bank charging voltage, which corresponds to 110 kA peak discharge current with time period of 34 μs. The experimental investigations have been studied using a magnetic probes and a miniature Rogowsky coil. A snowplough model is used to drive an analytical solution of the plasma sheath behavior in axial direction. Measurements of radial distribution of plasma sheath current density J r at the muzzle, show that J r has the following relation, J r is proportional to r -1.1 . From the experimental results and theoretical calculations of axial distribution of azimuthal magnetic field induction and plasma sheath velocity, the inclination angle between the normal of the plasma sheath with the axial distance at any axial position is evaluated and it has approximately a constant value for most axial distances. Also, the axial motion of plasma sheath acceleration is estimated experimentally a max = 0.13 x 10 12 ' cm / s 2 at z = 11 cm and from theoretical calculations a max = 0.15 x 10 12 cm/ s 2 at max z = 1.6 cm. A comparison of the experimental results with the theoretical calculations, under the assumption of the snowplough model are not in agreement. (author)

  8. Studies of irradiated zircaloy fuel sheathing using XPS

    Chan, P K; Irving, K G [Atomic Energy of Canada Ltd., Chalk River, ON (Canada); Hocking, W H; Duclos, A M; Gerwing, A F [Atomic Energy of Canada Ltd., Pinawa, MB (Canada). Whiteshell Labs.

    1996-12-31

    The preliminary results reported here support the hypothesis that CANLUB graphite coating reduces the rate at which oxygen can react with fuel sheathing. X-ray photoelectron spectroscopic (XPS) characterization of Zircaloy sheathing obtained from extended-burnup Bruce-type elements (BDL-406-XY (555 MW.h/kgU) and BDL-406-AAH (731 MW.h/kgU)) irradiated in NRU indicates that CANLUB may reduce fuel sheath oxidation, and hence that fission-liberated oxygen may remain in the fuel. Chemical shifts in the Zr 3d spectra suggest that a stoichiometric (ZrO{sub 2}) oxide film was formed only on Zircaloy in direct contact with fuel. Particulate fuel adhering to the sheath was also determined to be systematically more oxidized on surfaces with CANLUB than on those without it. The unique association of tin on sheathing specimens with the non-CANLUB-coated specimens might also suggest that the tin had segregated from the sheathing. It must be emphasized that further experiments are required to better define the effect of CANLUB on fuel oxidation. (author). 14 refs., 1 tab., 3 figs.

  9. Dynamic sheath studies in plasma source ion implantation

    Schever, J.T.; Shamim, M.; Conrad, J.R.

    1990-01-01

    Plasma Source Ion Implantation (PSII) is a non-line-of-sight method for materials processing in which a target is immersed in a plasma and pulse biased to a high negative voltage (∼ 50 kV). A model of the dynamic sheath which forms under these conditions has been developed and applied to planar, cylindrical and spherical geometries. This model assumes that the transient sheath obeys the Child-Langmuir law for space charge limited emission at each instant during the propagation. Ions uncovered by the propagating sheath edge supply the space charge limited current. This yields an equation relating sheath edge velocity to position, which can be integrated to obtain the sheath edge position as a function of time. The same procedure used in cylindrical and spherical geometry results in a similar equation which must be integrated numerically. Comparison of results of experimental measurements, our model and simulation will be presented for the dynamic sheath edge position and target current waveform. Measurements of implanted dose uniformity of wedge shaped targets are also presented

  10. Multimodal imaging in neurofibromatosis type 1-associated nerve sheath tumors

    Salamon, J.; Adam, G.; Mautner, V.F.; Derlin, T.

    2015-01-01

    Neurofibromatosis type 1 (NF1) is a neurogenetic disorder. Individuals with NF1 may develop a variety of benign and malignant tumors of which peripheral nerve sheath tumors represent the most frequent entity. Plexiform neurofibromas may demonstrate a locally destructive growth pattern, may cause severe symptoms and may undergo malignant transformation into malignant peripheral nerve sheath tumors (MPNSTs). Whole-body magnetic resonance imaging (MRI) represents the reference standard for detection of soft tissue tumors in NF1. It allows for identification of individuals with plexiform neurofibromas, for assessment of local tumor extent, and for evaluation of whole-body tumor burden on T2-weighted imaging. Multiparametric MRI may provide a comprehensive characterization of different tissue properties of peripheral nerve sheath tumors, and may identify parameters associated with malignant transformation. Due to the absence of any radiation exposure, whole-body MRI may be used for serial follow-up of individuals with plexiform neurofibromas. 18 F-fluorodeoxyglucose positron-emission-tomography (FDG PET/CT) allows a highly sensitive and specific detection of MPNST, and should be used in case of potential malignant transformation of a peripheral nerve sheath tumor. PET/CT provides a sensitive whole-body tumor staging. The use of contrast-enhanced CT for diagnosis of peripheral nerve sheath tumors is limited to special indications. To obtain the most precise readings, optimized examination protocols and dedicated radiologists and nuclear medicine physicians familiar with the complex and variable morphologies of peripheral nerve sheath tumors are required.

  11. Atomic Structure of Type VI Contractile Sheath from Pseudomonas aeruginosa.

    Salih, Osman; He, Shaoda; Planamente, Sara; Stach, Lasse; MacDonald, James T; Manoli, Eleni; Scheres, Sjors H W; Filloux, Alain; Freemont, Paul S

    2018-02-06

    Pseudomonas aeruginosa has three type VI secretion systems (T6SSs), H1-, H2-, and H3-T6SS, each belonging to a distinct group. The two T6SS components, TssB/VipA and TssC/VipB, assemble to form tubules that conserve structural/functional homology with tail sheaths of contractile bacteriophages and pyocins. Here, we used cryoelectron microscopy to solve the structure of the H1-T6SS P. aeruginosa TssB1C1 sheath at 3.3 Å resolution. Our structure allowed us to resolve some features of the T6SS sheath that were not resolved in the Vibrio cholerae VipAB and Francisella tularensis IglAB structures. Comparison with sheath structures from other contractile machines, including T4 phage and R-type pyocins, provides a better understanding of how these systems have conserved similar functions/mechanisms despite evolution. We used the P. aeruginosa R2 pyocin as a structural template to build an atomic model of the TssB1C1 sheath in its extended conformation, allowing us to propose a coiled-spring-like mechanism for T6SS sheath contraction. Copyright © 2017 The Authors. Published by Elsevier Ltd.. All rights reserved.

  12. Simulations of rf-driven sheath formation in two dimensions

    Riyopoulos, S.; Grossmann, W.; Drobot, A.; Kress, M.

    1992-01-01

    The results from two-dimensional particle simulations of sheath formation around periodic metal arrays placed inside magnetized plasmas and driven by oscillating voltages are reported. The main goal is the modeling of the plasma interaction with the Faraday bars surrounding the antennas during ion cyclotron tokamak heating. The study of the time-averaged potentials shows that the two-dimensional sheath structure depends on both the sheath length-to-thickness ratio and the inclination of the magnetic lines. The equipotential surfaces form closed, nested cells between adjacent bars. When the magnetic lines are nearly perpendicular to the potential gradients, the ion motion is dominated by the ExB drift, and ion streamlines form vortices around the equipotentials. At larger inclinations of the magnetic lines, the flow decouples from the equipotentials and ion transport is mainly along the potential gradients. The critical angle for the transition from vortex circulation to field aligned flow is computed. The effects of the cross-field ion transport on the sheath properties are discussed. It is shown that the sheath length and the magnetic line inclination affect the sheath scaling in the two-dimensional case. The one-dimensional theory results are recovered in the limit of high length-to-thickness ratio and large inclination of the magnetic lines

  13. Analytical expression for sheath edge around corner cathodes

    Sheridan, T E

    2009-01-01

    A simple analytical expression for the position of the sheath edge around a two-dimensional corner cathode with included angle θ c has been discovered. This expression is valid for weakly collisional sheaths in the Child-Langmuir regime φ c >> kT e /e, where -φ c e is the electron temperature. In polar coordinates (r, θ), the sheath edge is given by (r/s 0 )sin[πθ/(2π - θ c )] = [π/(2π - θ c )] where s 0 is the planar sheath width far from the vertex of the corner. This result is verified by comparison with previous numerical solutions (Watterson P A 1989 J. Phys. D: Appl. Phys. 22 1300) for the knife edge (θ c = 0) and convex square corner (θ c = π/2). The observed agreement suggests that this expression gives the sheath edge for all corner angles, both concave and convex. The utility of this result is demonstrated by computing the full sheath solution for a knife-edge cathode with φ c = 100kT e /e.

  14. Silencing of flavanone-3-hydroxylase in apple (Malus × domestica Borkh.) leads to accumulation of flavanones, but not to reduced fire blight susceptibility.

    Flachowsky, Henryk; Halbwirth, Heidi; Treutter, Dieter; Richter, Klaus; Hanke, Magda-Viola; Szankowski, Iris; Gosch, Christian; Stich, Karl; Fischer, Thilo C

    2012-02-01

    Transgenic antisense flavanone-3-hydroxylase apple plants were produced to mimic the effect of the agrochemical prohexadione-Ca on apple leaves. This enzyme inhibitor for 2-oxoglutarate dependent dioxygenases is used as a growth retardant and for control of secondary fire blight of leaves. Like using the agent, silencing of flavanone-3-hydroxylase leads to an accumulation of flavanones in leaves, but in contrast not to the formation of 3-deoxyflavonoids. In prohexadione-Ca treated leaves the 3-deoxyflavonoid luteoforol is formed from accumulating flavanones, acting as an antimicrobial compound against the fire blight pathogen Erwinia amylovora. Seemingly, the silencing of just one of the 2-oxoglutarate dependent dioxygenases (in apple also flavonol synthase and anthocyanidin synthase take part downstream in the pathway) does not provide a sufficiently high ratio of flavanones to dihydroflavonols. This seems to be needed to let the dihydroflavonol-4-reductase/flavanone-4-reductase enzyme reduce flavanones to luteoforol, and to let this be reduced by the leucoanthocyanidin-4-reductase/3-deoxyleucoanthocyanidin-4-reductase, each acting with their respective weak secondary activities. Accordingly, also the intended inducible resistance to fire blight by prohexadione-Ca is not observed with the antisense flavanone-3-hydroxylase apple plants. On the other hand, for most transgenic lines with strong flavanone-4-reductase down-regulation, up-regulation of gene expression for the other flavonoid genes was found. This provides further evidence for the feedback regulation of flavonoid gene expression having been previously reported for the prohexadione-Ca inhibited apple plants. Copyright © 2011 Elsevier Masson SAS. All rights reserved.

  15. Code-assisted discovery of TAL effector targets in bacterial leaf streak of rice reveals contrast with bacterial blight and a novel susceptibility gene.

    Raul A Cernadas

    2014-02-01

    Full Text Available Bacterial leaf streak of rice, caused by Xanthomonas oryzae pv. oryzicola (Xoc is an increasingly important yield constraint in this staple crop. A mesophyll colonizer, Xoc differs from X. oryzae pv. oryzae (Xoo, which invades xylem to cause bacterial blight of rice. Both produce multiple distinct TAL effectors, type III-delivered proteins that transactivate effector-specific host genes. A TAL effector finds its target(s via a partially degenerate code whereby the modular effector amino acid sequence identifies nucleotide sequences to which the protein binds. Virulence contributions of some Xoo TAL effectors have been shown, and their relevant targets, susceptibility (S genes, identified, but the role of TAL effectors in leaf streak is uncharacterized. We used host transcript profiling to compare leaf streak to blight and to probe functions of Xoc TAL effectors. We found that Xoc and Xoo induce almost completely different host transcriptional changes. Roughly one in three genes upregulated by the pathogens is preceded by a candidate TAL effector binding element. Experimental analysis of the 44 such genes predicted to be Xoc TAL effector targets verified nearly half, and identified most others as false predictions. None of the Xoc targets is a known bacterial blight S gene. Mutational analysis revealed that Tal2g, which activates two genes, contributes to lesion expansion and bacterial exudation. Use of designer TAL effectors discriminated a sulfate transporter gene as the S gene. Across all targets, basal expression tended to be higher than genome-average, and induction moderate. Finally, machine learning applied to real vs. falsely predicted targets yielded a classifier that recalled 92% of the real targets with 88% precision, providing a tool for better target prediction in the future. Our study expands the number of known TAL effector targets, identifies a new class of S gene, and improves our ability to predict functional targeting.

  16. Genomic and Expression Profiling of Benign and Malignant Nerve Sheath Profiling of Benign and Malignant Nerve Sheath

    2007-05-01

    Benign and Malignant Nerve Sheath Tumors in Neurofibromatosis Patients PRINCIPAL INVESTIGATOR: Matt van de Rijn, M.D., Ph.D. Torsten...Annual 3. DATES COVERED 1 May 2006 –30 Apr 2007 4. TITLE AND SUBTITLE 5a. CONTRACT NUMBER Genomic and Expression Profiling of Benign and Malignant Nerve...Award Number: DAMD17-03-1-0297 Title: Genomic and Expression Profiling of Benign and Malignant Nerve Sheath Tumors in Neurofibromatosis

  17. Alternative control of early blight of tomato using plant extracts from Acacia nilotica, Achillea fragrantissima and Calotropis procera

    Zakaria A.M. BAKA

    2016-05-01

    Full Text Available The in vitro and in vivo antifungal potential of extracts of three wild medicinal plants, (Acacia nilotica (L. Delile, Achillea fragrantissima (Forssk. Sch.Bip. and Calotropis procera (Aiton W. T. Aiton was examined against Alternaria solani, the causal agent of the early blight of tomato. Aqueous or ethanol extracts of all tested plants reduced the mycelial growth and conidium germination of A. solani in vitro. Ethanol extracts were more effective against the pathogen than the aqueous extracts. Extract of C. procera exhibited more antifungal potential against the pathogen than other plant extracts. Observations by scanning and transmission electron microscopy showed dramatic alterations in the morphology and ultrastructure of A. solani when treated with the ethanol extract of C. procera at a concentration of 20%. Phytochemical screening confirmed the presence of many bioactive constituents in the extracts which were in greater amounts in C. procera than the other two plants. In a plot experiment, both types of extracts from C. procera reduced disease severity. Tomato fruit yield was increased after the treatment with the plant extracts.

  18. A phenome-based functional analysis of transcription factors in the cereal head blight fungus, Fusarium graminearum.

    Hokyoung Son

    2011-10-01

    Full Text Available Fusarium graminearum is an important plant pathogen that causes head blight of major cereal crops. The fungus produces mycotoxins that are harmful to animal and human. In this study, a systematic analysis of 17 phenotypes of the mutants in 657 Fusarium graminearum genes encoding putative transcription factors (TFs resulted in a database of over 11,000 phenotypes (phenome. This database provides comprehensive insights into how this cereal pathogen of global significance regulates traits important for growth, development, stress response, pathogenesis, and toxin production and how transcriptional regulations of these traits are interconnected. In-depth analysis of TFs involved in sexual development revealed that mutations causing defects in perithecia development frequently affect multiple other phenotypes, and the TFs associated with sexual development tend to be highly conserved in the fungal kingdom. Besides providing many new insights into understanding the function of F. graminearum TFs, this mutant library and phenome will be a valuable resource for characterizing the gene expression network in this fungus and serve as a reference for studying how different fungi have evolved to control various cellular processes at the transcriptional level.

  19. Biocontrol of Late Blight (Phytophthora capsici Disease and Growth Promotion of Pepper by Burkholderia cepacia MPC-7

    Mao Sopheareth

    2013-03-01

    Full Text Available A chitinolytic bacterial strain having strong antifungal activity was isolated and identified as Burkholderia cepacia MPC-7 based on 16S rRNA gene analysis. MPC-7 solubilized insoluble phosphorous in hydroxyapatite agar media. It produced gluconic acid and 2-ketogluconic acid related to the decrease in pH of broth culture. The antagonist produced benzoic acid (BA and phenylacetic acid (PA. The authentic compounds, BA and PA, showed a broad spectrum of antimicrobial activity against yeast, several bacterial and fungal pathogens in vitro. To demonstrate the biocontrol efficiency of MPC-7 on late blight disease caused by Phytophthora capsici, pepper plants in pot trials were treated with modified medium only (M, M plus zoospore inoculation (MP, MPC-7 cultured broth (B and B plus zoospore inoculation (BP. With the sudden increase in root mortality, plants in MP wilted as early as five days after pathogen inoculation. However, plant in BP did not show any symptom of wilting until five days. Root mortality in BP was markedly reduced for as much as 50%. Plants in B had higher dry weight, P concentration in root, and larger leaf area compared to those in M and MP. These results suggested that B. cepacia MPC-7 should be considered as a candidate for the biological fertilizer as well as antimicrobial agent for pepper plants.

  20. Evolution of an invasive species research program and implications for large-scale management of a non-native, invasive plant pathogen

    Christopher A. Lee; Janice M. Alexander; Susan J. Frankel; Yana Valachovic

    2012-01-01

    We conducted a research needs assessment (RNA) in 2010 to gather opinions of "experts" and a larger public on research priorities for Phytophthora ramorum, the pathogen that causes sudden oak death in forest trees and Ramorum blight in ornamental plants. We place these 2010 findings in context with findings of similar P. ramorum...

  1. Gene Profiling in Late Blight Resistance in Potato Genotype SD20

    Xiaohui Yang

    2018-06-01

    Full Text Available Late blight caused by the oomycete fungus Phytophthora infestans (Pi is the most serious obstacle to potato (Solanum tuberosum production in the world. A super race isolate, CN152, which was identified from Sichuan Province, China, could overcome nearly all known late blight resistance genes and caused serious damage in China. The potato genotype SD20 was verified to be highly resistant to CN152; however, the molecular regulation network underlying late blight resistance pathway remains unclear in SD20. Here, we performed a time-course experiment to systematically profile the late blight resistance response genes using RNA-sequencing in SD20. We identified 3354 differentially expressed genes (DEGs, which mainly encoded transcription factors and protein kinases, and also included four NBS-LRR genes. The late blight responsive genes showed time-point-specific induction/repression. Multi-signaling pathways of salicylic acid, jasmonic acid, and ethylene signaling pathways involved in resistance and defense against Pi in SD20. Gene Ontology and KEGG analyses indicated that the DEGs were significantly enriched in metabolic process, protein serine/threonine kinase activity, and biosynthesis of secondary metabolites. Forty-three DEGs were involved in immune response, of which 19 were enriched in hypersensitive response reaction, which could play an important role in broad-spectrum resistance to Pi infection. Experimental verification confirmed the induced expression of the responsive genes in the late blight resistance signaling pathway, such as WRKY, ERF, MAPK, and NBS-LRR family genes. Our results provided valuable information for understanding late blight resistance mechanism of potato.

  2. Fire Blight Control: The Struggle Goes On. A Comparison of Different Fire Blight Control Methods in Switzerland with Respect to Biosafety, Efficacy and Durability

    Michele Gusberti

    2015-09-01

    Full Text Available Fire blight (FB, caused by Erwinia amylovora, is one of the most important pome fruit pathogens worldwide. To control this devastating disease, various chemical and biological treatments are commonly applied in Switzerland, but they fail to keep the infection at an acceptable level in years of heavy disease pressure. The Swiss authorities therefore currently allow the controlled use of the antibiotic streptomycin against FB in years that are predicted to have heavy infection periods, but only one treatment per season is permitted. Another strategy for controlling Erwinia is to breed resistant/tolerant apple cultivars. One way of accelerating the breeding process is to obtain resistant cultivars by inserting one or several major resistance genes, using genetic engineering. To date, no study summarizing the impact of different FB control measures on the environment and on human health has been performed. This study consequently aims to compare different disease-control measures (biological control, chemical control, control by antibiotics and by resistant/tolerant apple cultivars obtained through conventional or molecular breeding applied against E. amylovora, considering different protection goals (protection of human health, environment, agricultural diversity and economic interest, with special emphasis on biosafety aspects. Information on each FB control measure in relation to the specified protection goal was assessed by literature searches and by interviews with experts. Based on our results it can be concluded that the FB control measures currently applied in Switzerland are safe for consumers, workers and the environment. However, there are several gaps in our knowledge of the human health and environmental impacts analyzed: data are missing (1 on long term studies on the efficacy of most of the analyzed FB control measures; (2 on the safety of operators handling streptomycin; (3 on residue analyses of Equisetum plant extract, the copper

  3. The Child-Langmuir law and analytical theory of collisionless to collision-dominated sheaths

    Benilov, M S

    2009-01-01

    This paper is concerned with summarizing simple analytical models of space-charge sheaths and tracing their relation to the Child-Langmuir model of an ion sheath. The topics discussed include the Child-Langmuir law and model of a collisionless ion sheath, the Mott-Gurney law and model of a collision-dominated ion sheath, the Bohm model of a collisionless ion-electron sheath, the Su-Lam-Cohen model of a collision-dominated ion-electron sheath, ion sheaths with arbitrary collisionality, high-accuracy boundary conditions for the Child-Langmuir and Mott-Gurney models of an ion sheath and the mathematical sense of Child-Langmuir type models of an ion sheath from the point of view of modern theoretical physics.

  4. Behavior of collisional sheath in electronegative plasma with q-nonextensive electron distribution

    Borgohain, Dima Rani; Saharia, K.

    2018-03-01

    Electronegative plasma sheath is addressed in a collisional unmagnetized plasma consisting of q-nonextensive electrons, Boltzmann distributed negative ions and cold fluid positive ions. Considering the positive ion-neutral collisions and ignoring the effects of ionization and collisions between negative species and positive ions (neutrals), a modified Bohm sheath criterion and hence floating potential are derived by using multifluid model. Using the modified Bohm sheath criterion, the sheath characteristics such as spatial profiles of density, potential and net space charge density have been numerically investigated. It is found that increasing values of q-nonextensivity, electronegativity and collisionality lead to a decrease of the sheath thickness and an increase of the sheath potential and the net space charge density. With increasing values of the electron temperature to negative ion temperature ratio, the sheath thickness increases and the sheath potential as well as the net space charge density in the sheath region decreases.

  5. Leaf blight of catharanthus roseus (l). g. don caused by macrophomina phaseolina (tassi) goid and its in vitro control through bio-pesticides

    Mridha, M.A.U.; Rehman, M.M.

    2015-01-01

    Catharanthus roseus (L.).G. Don, a highly valued medicinal plant suffers from a serious disease. A survey on the symptom and severity of the leaf blight of C. roseus was performed in the nurseries of the Institute of Forestry and Environmental Sciences (IFESCU), Bangladesh Council of Industrial Research (BCSIR) and Bangladesh Forest Research Institute (BFRI), Bangladesh. An observation was also made in the avenues and garden of King Saud University (KSU), Kingdom of Saudi Arabia. No disease was recorded in KSU, but severe infections were found in all the locations surveyed in Bangladesh. The highest infection percentage and the highest disease index were found in BCSIR nursery followed by BFRI and the lowest was recorded in IFESCU nursery. Macrophomina phaseolina (Tassi) Goid was isolated and it was proved to be pathogenic. This is the first report of leaf blight of C. roseus caused by M. phaseolina. Azadirachta indica, Ocimum sanctum Vitex negundo, Mucuna pruriens, Calotropis procera, Terminalia arjuna, Allium sativum, Zingiber officinalis and Allium cepa were used as biopesticides. Out of the nine plant species screened, T. arjuna showed the highest (58.37%) inhibition percentage which was followed by A. indica (55.72%) and the lowest (27.4%) inhibition percentage were obtained with V. negundo whereas the rest of the plant extracts showed more or less same inhibitory effect. (author)

  6. Generation of pea mutants for resistance to Ascochyta blight and powdery mildew and their characterization using isozyme markers [Pisum sativum L.; India

    Sharma, R.; Kant, A.; Kaushal, R.P.

    2004-01-01

    To induce resistance in pea against Ascochyta blight and powdery mildew through mutagenesis, two locally grown cultivars Lincoln and Palam Priya were subjected to three doses each of gamma rays (10, 15 and 20 kR) and chemical mutagen ethylmethane sulfonate (0.1, 0.2 and 0.3%). Reduced germination was observed in response to mutagen treatment in both cultivars. Phenotypic changes were observed in M1 and M2 generations of both the cultivars. In M2 generation twenty-seven mutants of Lincoln and sixteen of Palam Priya were found resistant to Ascochyta blight under natural epiphytotic conditions. High level of resistance in M2 generation against powdery mildew could not be achieved. Plant progenies in the M3 generation were also evaluated for resistance to Ascochyta pinodes as well as Erysiphe pisi through detached leaf technique. Six mutants of Lincoln and only one of Palam Priya were found resistant to A. pinodes. One mutant of Palam Priya (P15-3) showed resistance to both the pathogens. Increased phenylalanine ammonia lyase activity was observed in all the resistant mutants. New isoforms of peroxidase could be detected in the mutant P15-3 (Palam Priya) and also in L0.2-1 (Lincoln). However, not much variation for esterase could be observed [it

  7. Coronal mass ejections and their sheath regions in interplanetary space

    Kilpua, Emilia; Koskinen, Hannu E. J.; Pulkkinen, Tuija I.

    2017-11-01

    Interplanetary coronal mass ejections (ICMEs) are large-scale heliospheric transients that originate from the Sun. When an ICME is sufficiently faster than the preceding solar wind, a shock wave develops ahead of the ICME. The turbulent region between the shock and the ICME is called the sheath region. ICMEs and their sheaths and shocks are all interesting structures from the fundamental plasma physics viewpoint. They are also key drivers of space weather disturbances in the heliosphere and planetary environments. ICME-driven shock waves can accelerate charged particles to high energies. Sheaths and ICMEs drive practically all intense geospace storms at the Earth, and they can also affect dramatically the planetary radiation environments and atmospheres. This review focuses on the current understanding of observational signatures and properties of ICMEs and the associated sheath regions based on five decades of studies. In addition, we discuss modelling of ICMEs and many fundamental outstanding questions on their origin, evolution and effects, largely due to the limitations of single spacecraft observations of these macro-scale structures. We also present current understanding of space weather consequences of these large-scale solar wind structures, including effects at the other Solar System planets and exoplanets. We specially emphasize the different origin, properties and consequences of the sheaths and ICMEs.

  8. Ontogeny of the sheathing leaf base in maize (Zea mays).

    Johnston, Robyn; Leiboff, Samuel; Scanlon, Michael J

    2015-01-01

    Leaves develop from the shoot apical meristem (SAM) via recruitment of leaf founder cells. Unlike eudicots, most monocot leaves display parallel venation and sheathing bases wherein the margins overlap the stem. Here we utilized computed tomography (CT) imaging, localization of PIN-FORMED1 (PIN1) auxin transport proteins, and in situ hybridization of leaf developmental transcripts to analyze the ontogeny of monocot leaf morphology in maize (Zea mays). CT imaging of whole-mounted shoot apices illustrates the plastochron-specific stages during initiation of the basal sheath margins from the tubular disc of insertion (DOI). PIN1 localizations identify basipetal auxin transport in the SAM L1 layer at the site of leaf initiation, a process that continues reiteratively during later recruitment of lateral leaf domains. Refinement of these auxin transport domains results in multiple, parallel provascular strands within the initiating primordium. By contrast, auxin is transported from the L2 toward the L1 at the developing margins of the leaf sheath. Transcripts involved in organ boundary formation and dorsiventral patterning accumulate within the DOI, preceding the outgrowth of the overlapping margins of the sheathing leaf base. We suggest a model wherein sheathing bases and parallel veins are both patterned via the extended recruitment of lateral maize leaf domains from the SAM. © 2014 The Authors. New Phytologist © 2014 New Phytologist Trust.

  9. Revisiting the plasma sheath—dust in plasma sheath

    Das, G. C. [Mathematical Science Division, IASST, Guwahati 781014 (India); Deka, R.; Bora, M. P., E-mail: mpbora@gauhati.ac.in [Physics Department, Gauhati University, Guwahati 781014 (India)

    2016-04-15

    In this work, we have considered the formation of warm plasma sheath in the vicinity of a wall in a plasma with considerable presence of dust particles. As an example, we have used the parameters relevant in case of plasma sheath formed around surfaces of various solid bodies in space, though the results obtained in this work can be applied to any other physical situation such as laboratory plasma. In the ion-acoustic time scale, we neglect the dust dynamics. The dust particles affect the sheath dynamics by affecting the Poisson equation which determines the plasma potential in the sheath region. It is important to note that our calculations are valid only when the amount of dust particles is not sufficient so as to affect the plasma dynamics in the dust-acoustic time scale, but enough to affect the plasma sheath. We have assumed the current to a dust particle to be balanced throughout the analysis. This makes the grain potential dependent on plasma potential, which is then incorporated into the Poisson equation. The resultant numerical model becomes an initial value problem, which is described by a 1-D integro-differential equation, which is then solved self-consistently by incorporating the change in plasma potential caused by inclusion of the dust potential in the Poisson equation.

  10. Sheath-accumulating Propagation of Interplanetary Coronal Mass Ejection

    Takahashi, Takuya; Shibata, Kazunari, E-mail: takahasi@kusastro.kyoto-u.ac.jp [Kwasan and Hida Observatories, Kyoto University, Yamashina, Kyoto 607–8471 (Japan)

    2017-03-10

    Fast interplanetary coronal mass ejections (ICMEs) are the drivers of strong space weather storms such as solar energetic particle events and geomagnetic storms. The connection between the space-weather-impacting solar wind disturbances associated with fast ICMEs at Earth and the characteristics of causative energetic CMEs observed near the Sun is a key question in the study of space weather storms, as well as in the development of practical space weather prediction. Such shock-driving fast ICMEs usually expand at supersonic speeds during the propagation, resulting in the continuous accumulation of shocked sheath plasma ahead. In this paper, we propose a “sheath-accumulating propagation” (SAP) model that describes the coevolution of the interplanetary sheath and decelerating ICME ejecta by taking into account the process of upstream solar wind plasma accumulation within the sheath region. Based on the SAP model, we discuss (1) ICME deceleration characteristics; (2) the fundamental condition for fast ICMEs at Earth; (3) the thickness of interplanetary sheaths; (4) arrival time prediction; and (5) the super-intense geomagnetic storms associated with huge solar flares. We quantitatively show that not only the speed but also the mass of the CME are crucial for discussing the above five points. The similarities and differences between the SAP model, the drag-based model, and the“snow-plow” model proposed by Tappin are also discussed.

  11. An investigation of tendon sheathing filler migration into concrete

    Naus, D.J.; Oland, C.B.

    1998-03-01

    During some of the inspections at nuclear power plants with prestressed concrete containments, it was observed that the containments has experienced leakage of the tendon sheathing filler (i.e., streaks). The objective of this activity was to provide an indication of the extent of tendon sheathing filler leakage into the concrete and its affects on concrete properties. Literature was reviewed and concrete core samples were obtained from the Trojan Nuclear Plant and tested. The literature primarily addressed effects of crude or lubricating oils that are known to cause concrete damage. However, these materials have significantly different characteristics relative to the materials used as tendon sheathing fillers. Examination and testing of the concrete cores indicated that the appearance of tendon sheathing filler on the concrete surface was due to leakage from the conduits and its subsequent migration through cracks that were present. Migration of the tendon sheathing filler was confined to the cracks and there was no perceptible movement into the concrete. Results of compressive strength testing indicated that the concrete quality was consistent in the containment and that the strength had increased over 40% in 25.4 years relative to the average compressive strength at 28-days age

  12. Dust crystal in the electrode sheath of a gaseous discharge

    Schweigert, I.V.; Schweigert, V.A.

    2002-01-01

    The phenomena observed in strongly coupled dusty plasmas in the electrode sheath of gas discharge clearly indicate that the screened Coulomb potential is not valid for inter-particle interaction. The reason why the conventional model breaks down is clear now. The strong electric field, accelerating ions toward the cathode, leads to an asymmetrical particle shielding and the appearance of an attractive component in the inter-particle force. The sheath plasma with micro-particles is non Hamiltonian system because of input of energy from ion flux from the bulk plasma. The models of interaction potential of microparticles in sheath are proposed. The first is the linear effective positive charge (EPC). On the basis of this model the stability of the dust crystal in the sheath is analyzed both analytically and in MD simulations. The scenario of crystal melting is described. The role of different types of defects in the local heating of the crystal is considered. The next non-linear model of sheath plasma with micro-particles allows to find all parameter of plasma crystal: particle charge, inter-particle distance and study the structural transition. We constructed the analytical expression for inter-particle potential and have found the mechanism acceleration of extra particle beneath the monolayer. Recently new more simple analytical kinetic approach, accounting for ion collisions, have been developed. The structural transition in the dust molecular was obtained in simulation with multipole expansion model interaction potential

  13. Coronal mass ejections and their sheath regions in interplanetary space

    Emilia Kilpua

    2017-11-01

    Full Text Available Abstract Interplanetary coronal mass ejections (ICMEs are large-scale heliospheric transients that originate from the Sun. When an ICME is sufficiently faster than the preceding solar wind, a shock wave develops ahead of the ICME. The turbulent region between the shock and the ICME is called the sheath region. ICMEs and their sheaths and shocks are all interesting structures from the fundamental plasma physics viewpoint. They are also key drivers of space weather disturbances in the heliosphere and planetary environments. ICME-driven shock waves can accelerate charged particles to high energies. Sheaths and ICMEs drive practically all intense geospace storms at the Earth, and they can also affect dramatically the planetary radiation environments and atmospheres. This review focuses on the current understanding of observational signatures and properties of ICMEs and the associated sheath regions based on five decades of studies. In addition, we discuss modelling of ICMEs and many fundamental outstanding questions on their origin, evolution and effects, largely due to the limitations of single spacecraft observations of these macro-scale structures. We also present current understanding of space weather consequences of these large-scale solar wind structures, including effects at the other Solar System planets and exoplanets. We specially emphasize the different origin, properties and consequences of the sheaths and ICMEs.

  14. Sheath-accumulating Propagation of Interplanetary Coronal Mass Ejection

    Takahashi, Takuya; Shibata, Kazunari

    2017-01-01

    Fast interplanetary coronal mass ejections (ICMEs) are the drivers of strong space weather storms such as solar energetic particle events and geomagnetic storms. The connection between the space-weather-impacting solar wind disturbances associated with fast ICMEs at Earth and the characteristics of causative energetic CMEs observed near the Sun is a key question in the study of space weather storms, as well as in the development of practical space weather prediction. Such shock-driving fast ICMEs usually expand at supersonic speeds during the propagation, resulting in the continuous accumulation of shocked sheath plasma ahead. In this paper, we propose a “sheath-accumulating propagation” (SAP) model that describes the coevolution of the interplanetary sheath and decelerating ICME ejecta by taking into account the process of upstream solar wind plasma accumulation within the sheath region. Based on the SAP model, we discuss (1) ICME deceleration characteristics; (2) the fundamental condition for fast ICMEs at Earth; (3) the thickness of interplanetary sheaths; (4) arrival time prediction; and (5) the super-intense geomagnetic storms associated with huge solar flares. We quantitatively show that not only the speed but also the mass of the CME are crucial for discussing the above five points. The similarities and differences between the SAP model, the drag-based model, and the“snow-plow” model proposed by Tappin are also discussed.

  15. Ocorrência e sintomas da mancha de Ascochyta em feijão-vagem Occurrence and symptoms of Ascochyta blight on snap bean

    Maria Aparecida de Souza Tanaka

    1996-01-01

    Full Text Available A mancha de ascochita (Ascochyta phaseolorum Sacc. foi identificada como uma das principais doenças do feijão-vagem (Phaseolus vulgaris L., na região de Itatiba (SP, em levantamento realizado de abril de 1991 a março de 92. Seus sintomas são manchas foliares arredondadas, tipicamente zonadas e de tamanho variável, necrosando, às vezes, extensas áreas do limbo e provocando desfolha prematura. Associado a esse sintoma foliar, o patógeno pode causar lesões nas hastes, pecíolos e vagens, assumindo proporções severas. As lesões necróticas das hastes podem estrangula-las e provocar a morte da planta acima da região afetada. Nas vagens, as lesões tendem a ser circulares e zonadas, como as das folhas, porém os anéis concêntricos são menos evidentes. Isolamentos, características culturais e morfológicas e testes de patogenicidade permitiram diagnosticar a moléstia, que vinha sendo confundida com a mancha foliar de alternária, ou com a podridão de macrofomina, quando atacava a parte inferior da haste. A identificação do patógeno, por ter permitido o diagnóstico preciso da doença. poderá embasar o emprego de métodos adequados de controle.A severe Ascochyta blight (Ascochyta phaseolorum Sacc., was found during a survey carried out in farmer's fields of snap bean (Phaseolus vulgaris L. at Itatiba county, São Paulo State, Brazil. Foliar lesions were usually circular to irregular shaped, brown to dark brown and usually contained concentric circles of picnidia. These lesions often blighted the entire leaves, that die and fall. The pathogen also infected the stems, petioles and pods, and the disease incidence ranged from trace to severe. The stems and petioles lesions were elongated and cankerous, often girdling them, killing the plant above the infected region. The pod lesions were initially circular and zonate, as the foliar spots, but the concentric circles are of little evidence. Diagnosis were confirmed by isolation

  16. Generation of advanced fire blight-resistant apple (Malus × domestica) selections of the fifth generation within 7 years of applying the early flowering approach.

    Schlathölter, Ina; Jänsch, Melanie; Flachowsky, Henryk; Broggini, Giovanni Antonio Lodovico; Hanke, Magda-Viola; Patocchi, Andrea

    2018-03-14

    The approach presented here can be applied to reduce the time needed to introduce traits from wild apples into null segregant advanced selections by one-fourth. Interesting traits like resistances to pathogens are often found within the wild apple gene pool. However, the long juvenile phase of apple seedlings hampers the rapid introduction of these traits into new cultivars. The rapid crop cycle breeding approach used in this paper is based on the overexpression of the birch (Betula pendula) MADS4 transcription factor in apple. Using the early flowering line T1190 and 'Evereste' as source of the fire blight resistance (Fb_E locus), we successfully established 18 advanced selections of the fifth generation in the greenhouse within 7 years. Fifteen individuals showed the habitus expected of a regular apple seedling, while three showed very short internodes. The null segregants possessing a regular habitus maintained the high level of fire blight resistance typical for 'Evereste'. Using SSR markers, we estimated the percentage of genetic drag from 'Evereste' still associated with Fb_E on linkage group 12 (LG12). Eight out of the 18 selections had only 4% of 'Evereste' genome left. Since genotypes carrying the apple scab resistance gene Rvi6 and the fire blight resistance QTL Fb_F7 were used as parents in the course of the experiments, these resistances were also identified in some of the null segregants. One seedling is particularly interesting as, beside Fb_E, it also carries Fb_F7 heterozygously and Rvi6 homozygously. If null segregants obtained using this method will be considered as not genetically modified in Europe, as is already the case in the USA, this genotype could be a very promising parent for breeding new fire blight and scab-resistant apple cultivars in European apple breeding programs.

  17. Experimental investigation of plasma sheaths in magnetic mirror and cusp configurations

    Jiang, Zhengqi; Wei, Zi-an; Ma, J. X.

    2017-11-01

    Sheath structures near a metal plate in a magnetized plasma were experimentally investigated in magnetic mirror and cusp configurations. Plasma parameters and the sheath potential distributions were probed by a planar and an emissive probe, respectively. The measured sheath profiles in the mirror configuration show that the sheath thickness first decreases and then increases when the magnetic strength is raised. A magnetic flux-tube model was used to explain this result. In the cusp configuration, the measured sheath thickness decreases with the increase of the coil current creating the magnetic cusp. However, when normalized by the electron Debye length, the dependence of the sheath thickness on the coil current is reversed.

  18. Quantitative Effects of Early and Late Blights on Tomato Yields in Cameroon

    Fontem, DA.

    2003-01-01

    Full Text Available Early blight caused by Alternaria solani and late blight caused by Phytophthora infestans are the major diseases of tomato (Lycopersicon esculentum in Cameroon. The effect of both diseases on fruit yield was evaluated during the 1995 growing season in Dschang, Cameroon.Ten varieties were planted in the first trial (March-July and nine in the second (July- November. In both trials, plots were sprayed weekly with Ridomil Plus (2.0 kg/ha before flowering and with maneb (1.6 kg/ha after flowering. Early blight was more severe in the early part of the first trial, while late blight caused most damage during the second. Marketable yields varied according to variety. High yields in sprayed plots were obtained in Dona F1 (61.63 t/ha and Heinz 1370 (68.24 t/ha during the first trial, and in Fline (58.35 t/ha, Mecline (64.25 t/ha, and Moboline (55.16 t/ha during the second trial. Percent fruit infection in sprayed plots caused by both diseases varied according to variety from 12 to 65% in the first season and from 14 to 52% in the second, while losses in marketable yields for both blights were as high as 100% in unsprayed plots.

  19. Effect of electron emission on an ion sheath structure

    Mishra, M K; Phukan, A; Chakraborty, M

    2014-01-01

    This article reports on the variations of ion sheath structures due to the emission of both hot and cold electrons in the target plasma region of a double plasma device. The ion sheath is produced in front of a negatively biased plate. The plasma is produced by hot filament discharge in the source region, and no discharge is created in the target region of the device. The plate is placed in the target (diffused plasma) region where cold electron emitting filaments are present. These cold electrons are free from maintenance of discharge, which is sustained in the source region. The hot ionizing electrons are present in the source region. Three important parameters are changed by both hot and cold electrons i.e. plasma density, plasma potential and electron temperature. The decrease in plasma potential and the increase in plasma density lead to the contraction of the sheath. (paper)

  20. Anomalous Capacitive Sheath with Deep Radio Frequency Electric Field Penetration

    Kaganovich, Igor D.

    2002-01-01

    A novel nonlinear effect of anomalously deep penetration of an external radio-frequency electric field into a plasma is described. A self-consistent kinetic treatment reveals a transition region between the sheath and the plasma. Because of the electron velocity modulation in the sheath, bunches in the energetic electron density are formed in the transition region adjusted to the sheath. The width of the region is of order V(subscript T)/omega, where V(subscript T) is the electron thermal velocity, and w is frequency of the electric field. The presence of the electric field in the transition region results in a cooling of the energetic electrons and an additional heating of the cold electrons in comparison with the case when the transition region is neglected

  1. Plasma sheath axial phase dynamics in coaxial device

    Soliman, H.M. (Plasma Physics Dept., NRC, Atomic Energy Authority, Cairo (Egypt)); Masoud, M.M. (Plasma Physics Dept., NRC, Atomic Energy Authority, Cairo (Egypt))

    1994-10-01

    The study of the plasma sheath dynamics in the axial phase has been carried out in a 3 kJ coaxial system of Mather type for two different inner electrode (IE) lengths, 20 cm and 31.5 cm. For both lengths, measurements showed that the plasma sheath is splitted into two layers at the breech, which is referred to as a shock front and its magnetic piston. It has been found that the two layers of the plasma current sheath rotate around the inner electrode. At the muzzle the back layer reverse its rotation direction due to the magnetic field structure of the system. Results showed that the axial velocity of the first layer is greater than the second one all over the axial phase within the range between 1.4 and 1.7. (orig.).

  2. Plasma sheath axial phase dynamics in coaxial device

    Soliman, H.M.; Masoud, M.M.

    1994-01-01

    The study of the plasma sheath dynamics in the axial phase has been carried out in a 3 kJ coaxial system of Mather type for two different inner electrode (IE) lengths, 20 cm and 31.5 cm. For both lengths, measurements showed that the plasma sheath is splitted into two layers at the breech, which is referred to as a shock front and its magnetic piston. It has been found that the two layers of the plasma current sheath rotate around the inner electrode. At the muzzle the back layer reverse its rotation direction due to the magnetic field structure of the system. Results showed that the axial velocity of the first layer is greater than the second one all over the axial phase within the range between 1.4 and 1.7. (orig.)

  3. Spontaneous rectus sheath hematoma: The utility of CT angiography

    Antonio Pierro, MD

    2018-04-01

    Full Text Available We described the utility of computed tomography (CT angiography in detection of bleeding vessels for a rapid percutaneous arterial embolization of the spontaneous rectus sheath hematoma. A 70-year-old woman comes to our attention with acute abdominal pain and a low hemoglobin level. An unenhanced CT was performed demonstrating a large rectus sheath hematoma. A conservative management was initially established. Despite this therapy, the abdominal pain increased together with a further decrease of hemoglobin values. A CT angiography was then performed, demonstrating an active bleeding within the hematoma and addressing the patient to a rapid percutaneous arterial embolization. Keywords: Rectus sheath hematoma, Acute abdomen, Arterial embolization, CT angiography, Active bleeding

  4. Photovoltaic building sheathing element with anti-slide features

    Keenihan, James R.; Langmaid, Joseph A.; Lopez, Leonardo C.

    2015-09-08

    The present invention is premised` upon an assembly that includes at least a photovoltaic building sheathing element capable of being affixed on a building structure, the photovoltaic building sheathing element. The element including a photovoltaic cell assembly, a body portion attached to one or more portions of the photovoltaic cell assembly; and at feast a first and a second connector assembly capable of directly or indirectly electrically connecting the photovoltaic cell assembly to one or more adjoining devices; wherein the body portion includes one or more geometric features adapted to engage a vertically adjoining device before installation.

  5. Dengue fever with rectus sheath hematoma: A case report

    Anurag Sharma

    2014-01-01

    Full Text Available Dengue fever, also known as breakbone fever, is an infectious tropical disease caused by the Dengue virus. It is associated with a number of complications, which are well documented. However, Dengue fever associated with rectus sheath hematoma (RSH is a very rare complication. Only one case report has been published prior supporting the association of Dengue fever with RSH. We report a case of Dengue fever who presented with RSH and was successfully treated conservatively. RSH is also an uncommon cause of acute abdominal pain. It is accumulation of blood in the sheath of the rectus abdominis, secondary to rupture of an epigastric vessel or muscle tear.

  6. Use of a hot sheath Tormac for advance fuels

    Levine, M.A.

    1977-01-01

    The use of hot electrons in a Tormac sheath is predicted to improve stability and increase ntau by an order of magnitude. An effective ntau for energy containment is derived and system parameters for several advance fuels are shown. In none of the advance fuels cases considered is a reactor with fields greater than 10 Wb or major plasma radius of more than 3 m required for ignition. Minimum systems have power output of under 100 MW thermal. System parameters for a hot sheath Tormac have a wide latitude. Sizes, magnetic fields, operating temperatures can be chosen to optimize engineering and economic considerations

  7. Characterization of a new pathovar of Agrobacterium vitis causing banana leaf blight in China.

    Huang, Siliang; Long, Mengling; Fu, Gang; Lin, Shanhai; Qin, Liping; Hu, Chunjin; Cen, Zhenlu; Lu, Jie; Li, Qiqin

    2015-01-01

    A new banana leaf blight was found in Nanning city, China, during a 7-year survey (2003-2009) of the bacterial diseases on banana plants. Eight bacterial strains were isolated from affected banana leaves, and identified as an intraspecific taxon of Agrobacterium vitis based on their 16S rDNA sequence similarities with those of 37 randomly selected bacterial strains registered in GenBank database. The representative strain Ag-1 was virulent on banana leaves and shared similar growth and biochemical reactions with the reference strain IAM14140 of A. vitis. The strains causing banana leaf blight were denominated as A. vitis pv. musae. The traditional A. vitis strains virulent to grapevines were proposed to be revised as A. vitis pv. vitis. This is the first record of a new type of A. vitis causing banana leaf blight in China. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  8. The suitability of Finnish climate for fire blight (Erwinia amylovora epidemics on apple

    Mariela Marinova-Todorova

    2015-03-01

    Full Text Available Fire blight, which is an important disease of apples and pears, has never been detected in continental Finland. In this study the suitability of the Finnish climate for apple blossom blight infections by Erwinia amylovora was evaluated with the epidemiological model MaryblytTM. This was done in fourteen locations, and for two apple cultivars differing in flowering times. Climatic conditions were predicted to be suitable for blossom infections in 18 - 51% of the years, and the annual period of suitable conditions was predicted to last up to two to five days, depending on the location and apple cultivar. The suitable period was predicted to be longer in some locations in central Finland than in those in the southernmost parts of the country. Based on these results the official surveys that are carried out to confirm the absence of fire blight in Finland cannot be targeted only to some parts of the country.

  9. Enhanced resistance to blister blight in transgenic tea (Camellia sinensis [L.] O. Kuntze) by overexpression of class I chitinase gene from potato (Solanum tuberosum).

    Singh, H Ranjit; Deka, Manab; Das, Sudripta

    2015-07-01

    Tea is the second most consumed beverage in the world. A crop loss of up to 43 % has been reported due to blister blight disease of tea caused by a fungus, Exobasidium vexans. Thus, it directly affects the tea industry qualitatively and quantitatively. Solanum tuberosum class I chitinase gene (AF153195) is a plant pathogenesis-related gene. It was introduced into tea genome via Agrobacterium-mediated transformation with hygromycin phosphotransferase (hpt) gene conferring hygromycin resistance as plant selectable marker. A total of 41 hygromycin resistant plantlets were obtained, and PCR analysis established 12 plantlets confirming about the stable integration of transgene in the plant genome. Real-time PCR detected transgene expression in four transgenic plantlets (T28, C57, C9, and T31). Resistance to biotrophic fungal pathogen, E. vexans, was tested by detached leaf infection assay of greenhouse acclimated plantlets. An inhibitory activity against the fungal pathogen was evident from the detached leaves from the transformants compared with the control. Fungal lesion formed on control plantlet whereas the transgenic plantlets showed resistance to inoculated fungal pathogen by the formation of hypersensitivity reaction area. This result suggests that constitutive expression of the potato class I chitinase gene can be exploited to improve resistance to fungal pathogen, E. vexans, in economical perennial plantation crop like tea.

  10. A suitable boundary condition for bounded plasma simulation without sheath resolution

    Parker, S.E.; Procassini, R.J.; Birdsall, C.K.; Cohen, B.I.

    1993-01-01

    We have developed a technique that allows for a sheath boundary layer without having to resolve the inherently small space and time scales of the sheath region. We refer to this technique as the logical sheath boundary condition. This boundary condition, when incorporated into a direct-implicit particle code, permits large space- and time-scale simulations of bounded systems, which would otherwise be impractical on current supercomputers. The lack of resolution of the collector sheath potential drop obtained from conventional implicit simulations at moderate values of ω pe Δt and Δz/λ De provides the motivation for the development of the logical sheath boundary condition. The algorithm for use of the logical sheath boundary condition in a particle simulation is presented. Results from simulations which use the logical sheath boundary condition are shown to compare reasonably well with those from an analytic theory and simulations in which the sheath is resolved

  11. Fabrication and use of zircaloy/tantalum-sheathed cladding thermocouples and molybdenum/rhenium-sheathed fuel centerline thermocouples

    Wilkins, S.C.; Sepold, L.K.

    1985-01-01

    The thermocouples described in this report are zircaloy/tantalum-sheathed and molybdenum/rhenium alloy-sheathed instruments intended for fuel rod cladding and fuel centerline temperature measurements, respectively. Both types incorporate beryllium oxide insulation and tungsten/rhenium alloy thermoelements. These thermocouples, operated at temperatures of 2000 0 C and above, were developed for use in the internationally sponsored Severe Fuel Damage test series in the Power Burst Facility. The fabrication steps for both thermocouple types are described in detail. A laser-welding attachment technique for the cladding-type thermocouple is presented, and experience with alternate materials for cladding and fuel therocouples is discussed

  12. Mapping Quantitative Trait Loci (QTL for Resistance to Late Blight in Tomato

    Dilip R. Panthee

    2017-07-01

    Full Text Available Late blight caused by Phytophthora infestans (Montagne, Bary is a devastating disease of tomato worldwide. There are three known major genes, Ph-1, Ph-2, and Ph-3, conferring resistance to late blight. In addition to these three genes, it is also believed that there are additional factors or quantitative trait loci (QTL conferring resistance to late blight. Precise molecular mapping of all those major genes and potential QTL is important in the development of suitable molecular markers and hence, marker-assisted selection (MAS. The objective of the present study was to map the genes and QTL associated with late blight resistance in a tomato population derived from intra-specific crosses. To achieve this objective, a population, derived from the crossings of NC 1CELBR × Fla. 7775, consisting of 250 individuals at F2 and F2-derived families, were evaluated in replicated trials. These were conducted at Mountain Horticultural Crops Reseach & Extension Center (MHCREC at Mills River, NC, and Mountain Research Staion (MRS at Waynesville, NC in 2011, 2014, and 2015. There were two major QTL associated with late blight resistance located on chromosomes 9 and 10 with likelihood of odd (LOD scores of more than 42 and 6, explaining 67% and 14% of the total phenotypic variation, respectively. The major QTLs are probably caused by the Ph-2 and Ph-3 genes. Furthermore, there was a minor QTL on chromosomes 12, which has not been reported before. This minor QTL may be novel and may be worth investigating further. Source of resistance to Ph-2, Ph-3, and this minor QTL traces back to line L3707, or Richter’s Wild Tomato. The combination of major genes and minor QTL may provide a durable resistance to late blight in tomato.

  13. First record of Glomerella cingulata causing leaf blight on Talauma ovata (Magnoliaceae Primeiro relato de Glomerella cingulata causando queima foliar em Talauma ovata (Magnoliaceae

    Bruno Sérgio Vieira

    2005-10-01

    Full Text Available Glomerella cingulata was found causing severe leaf blight on Talauma ovata, a common tree species in the Atlantic tropical rain forest floodplains of Southern Brazil. The disease and pathogen are described and illustrated and patogenicity is also demonstrated. This is the first report of this disease.Glomerella cingulata foi encontrado causando severa queima-foliar em Talauma ovata, uma espécie arbórea comum em florestas úmidas tropicais do Sudeste do Brasil. A doença e o patógeno foram descritos e ilustrados, e sua patogenicidade também foi demonstrada. Esse é o primeiro relato dessa doença.

  14. Survival of Fusarium graminearum, the causal agent of Fusarium head blight. A review

    Leplat , Johann; Friberg , Hanna; Abid , Muhammad; Steinberg , Christian

    2012-01-01

    International audience; Wheat is one of the most cultivated crops worldwide. In 2010, 20 % of wheat and durum wheat were cultivated in Europe, 17 % in China and 9 % in Russia and in North America. Wheat yield can be highly decreased by several factors. In particular Fusarium graminearum Schwabe is a worldwide fungal pest impacting wheat production. F. graminearum is the causal agent of Fusarium head blight, root and stem-base rot of cereals. Losses caused by Fusarium head blight in Northern a...

  15. Effect of radiofrequency on capacitance of low density plasma sheath

    Carneiro, L.T.; Cunha Rapozo, C. da

    1988-01-01

    It is shown that the influence of induced radiofrequency potential (V RF ) modifies the Bohm theory on ion saturation current, measured with Langmuir probes. The effect of radiofrequency potential on diode type plasma sheath resonance is also investigated. (M.C.K.)

  16. Malignant peripheral nerve sheath tumor of the oculomotor nerve

    Kozic, D; Nagulic, M; Ostojic, J

    2006-01-01

    We present the short-term follow-up magnetic resonance (MR) studies and 1H-MR spectroscopy in a child with malignant peripheral nerve sheath tumor of the oculomotor nerve associated with other less aggressive cranial nerve schwannomas. The tumor revealed perineural extension and diffuse nerve...

  17. Double polymer sheathed carbon nanotube supercapacitors show enhanced cycling stability

    Zhao, Wenqi; Wang, Shanshan; Wang, Chunhui; Wu, Shiting; Xu, Wenjing; Zou, Mingchu; Ouyang, An; Cao, Anyuan; Li, Yibin

    2015-12-01

    Pseudo-materials are effective in boosting the specific capacitance of supercapacitors, but during service their degradation may also be very strong, causing reduced cycling stability. Here, we show that a carbon nanotube sponge grafted by two conventional pseudo-polymer layers in sequence can serve as a porous supercapacitor electrode with significantly enhanced cycling stability compared with single polymer grafting. Creating conformal polymer coatings on the nanotube surface and the resulting double-sheath configuration are important structural factors leading to the enhanced performance. Combining different polymers as double sheaths as reported here might be a potential route to circumvent the dilemma of pseudo-materials, and to simultaneously improve the capacitance and stability for various energy storage devices.Pseudo-materials are effective in boosting the specific capacitance of supercapacitors, but during service their degradation may also be very strong, causing reduced cycling stability. Here, we show that a carbon nanotube sponge grafted by two conventional pseudo-polymer layers in sequence can serve as a porous supercapacitor electrode with significantly enhanced cycling stability compared with single polymer grafting. Creating conformal polymer coatings on the nanotube surface and the resulting double-sheath configuration are important structural factors leading to the enhanced performance. Combining different polymers as double sheaths as reported here might be a potential route to circumvent the dilemma of pseudo-materials, and to simultaneously improve the capacitance and stability for various energy storage devices. Electronic supplementary information (ESI) available. See DOI: 10.1039/c5nr05978j

  18. Extraction of antioxidant pigments from dye sorghum leaf sheaths

    Kayode, A.P.P.; Bara, C.A.; Dalode-Vieira, G.; Linnemann, A.R.; Nout, M.J.R.

    2012-01-01

    Extraction of antioxidant biocolorant pigments from leaf sheaths of dye sorghum was optimized. Effects of temperature and ethanol concentration of the extraction solvent on the concentrations of the 3-deoxyanthocyanidins, total phenolics and total anthocyanins, and the colour parameters of the

  19. Ion clusters, REB, and current sheath characteristics in focused discharges

    Bortolotti, A.; Brzosko, J.; DeChiara, P.; Kilic, H.; Mezzetti, F.; Nardi, V.; Powell, C.; Zeng, D.

    1990-01-01

    Small fluctuations in the current sheath characteristics (peak current density, FWHM of leading sheath, control parameters of sheath internal structure) are linked to wide fluctuations of ion and ion cluster emission from the pinch. Magnetic probe data are used for correlating variations of current sheath parameters with particle emission intensity, Z/M composition, particle energy spectrum. The emission of ion and ion clusters at 90 degrees from the axis of a plasma focus discharge is monitored simultaneously with the 0 degrees emission. The particle energy spectrum is analyzed with a Thomson (parabola) spectrometer (time resolution ∼ 1 nanosec). The cross-sectional structure of the REB at 180 degrees along the discharge axis is monitored via the deposition of collective-field accelerated ions on a target in the REB direction. Etched tracks of ion and ion clusters are in all cases recorded on CR-39 plates. Sharp peaks of the D + -ion spectrum at 90 degrees are found for E > 200 keV/unit charge in all focused discharges. These peaks are due to ion crossing of the azimuthal magnetic field of the pinch region, in a predominant ion cluster structure

  20. Electron sheath collapse in an applied-B ion diode

    Grechikha, A.V.

    1996-01-01

    The effect of the electron sheath collapse in an applied-B ion diode due to the presence of the resistive anode plasma layer was found. This effect is more damaging at higher diode voltages and may be responsible for the parasitic load effect observed in the experiments. (author). 4 figs., 2 refs

  1. Synovial sarcoma mimicking benign peripheral nerve sheath tumor

    Larque, Ana B.; Nielsen, G.P.; Chebib, Ivan [Massachusetts General Hospital and Harvard Medical School, Department of Pathology, Boston, MA (United States); Bredella, Miriam A. [Massachusetts General Hospital and Harvard Medical School, Department of Radiology, Boston, MA (United States)

    2017-11-15

    To assess the radiographic and clinicopathologic features of synovial sarcoma of the nerve that were clinically or radiologically interpreted as benign peripheral nerve sheath tumor. Five patients with synovial sarcoma arising from the peripheral nerve and interpreted clinically and radiologically as peripheral nerve sheath tumors were identified. Clinicopathologic and imaging features were evaluated. There were three females and two males, ranging in age from 28 to 50 (mean 35.8) years. Most patients (4/5) complained of a mass, discomfort or pain. MR images demonstrated a heterogeneous, enhancing, soft tissue mass contiguous with the neurovascular bundle. On histologic examination, most tumors were monophasic synovial sarcoma (4/5). At the time of surgery, all tumors were noted to arise along or within a peripheral nerve. All patients were alive with no evidence of disease with median follow-up of 44 (range 32-237) months. For comparison, approximately 775 benign peripheral nerve sheath tumors of the extremities were identified during the same time period. Primary synovial sarcoma of the nerve can mimic peripheral nerve sheath tumors clinically and on imaging and should be included in the differential diagnosis for tumors arising from peripheral nerves. (orig.)

  2. Charge of a macroscopic particle in a plasma sheath

    Samarian, A.A.; Vladimirov, S.V.

    2003-01-01

    Charging of a macroscopic body levitating in a rf plasma sheath is studied experimentally and theoretically. The nonlinear charge vs size dependence is obtained. The observed nonlinearity is explained on the basis of an approach taking into account different plasma conditions for the levitation positions of different particles. The importance of suprathermal electrons' contribution to the charging process is demonstrated

  3. Mineralized fibroma of the tendon sheath presenting as a bursitis

    Le Corroller, Thomas; Champsaur, Pierre [Hopital Sainte-Marguerite, Service de Radiologie, Marseille (France); Faculte de Medecine de Marseille, Departement d' Anatomie, Marseille (France); Bouvier-Labit, Corinne [Hopital La Timone, Service d' Anatomopathologie, Marseille (France); Sbihi, Abderrahmane [Clinique Juge, Service de Chirurgie orthopedique, Marseille (France)

    2008-12-15

    We report on the clinical, imaging - including ultrasound, computed tomography, and magnetic resonance imaging - and histological features of a fibroma of the tendon sheath with mineralized chondroid and osseous metaplasia, presenting as a semimembranosus bursitis. The anatomical characteristics of the semimembranosus bursa are demonstrated by dissection in a cadaveric specimen and correlated with the imaging findings in our patient. (orig.)

  4. Mineralized fibroma of the tendon sheath presenting as a bursitis

    Le Corroller, Thomas; Champsaur, Pierre; Bouvier-Labit, Corinne; Sbihi, Abderrahmane

    2008-01-01

    We report on the clinical, imaging - including ultrasound, computed tomography, and magnetic resonance imaging - and histological features of a fibroma of the tendon sheath with mineralized chondroid and osseous metaplasia, presenting as a semimembranosus bursitis. The anatomical characteristics of the semimembranosus bursa are demonstrated by dissection in a cadaveric specimen and correlated with the imaging findings in our patient. (orig.)

  5. The Bohm criterion for a dusty plasma sheath

    undergo temperature fluctuations due to collision, the mean square fluctuation in their temperature is much less than the equilibrium temperature. The problem of sheath dynamics with the plasma–wall interactions is of great importance in a number of areas, viz., plasma ion implantation, high-density com- puter chip ...

  6. Spine Patterning Is Guided by Segmentation of the Notochord Sheath

    Wopat, Susan; Bagwell, Jennifer; Sumigray, Kaelyn D.; Dickson, Amy L.; Huitema, Leonie F.A.; Poss, Kenneth D.; Schulte-Merker, Stefan; Bagnat, Michel

    2018-01-01

    The spine is a segmented axial structure made of alternating vertebral bodies (centra) and intervertebral discs (IVDs) assembled around the notochord. Here, we show that, prior to centra formation, the outer epithelial cell layer of the zebrafish notochord, the sheath, segments into alternating

  7. Malignant Peripheral Nerve Sheath Tumor: MRI and CT Findings

    K. O. Kragha

    2015-01-01

    important in its diagnosis. A rare case of MPNST that produced urinary retention and bowel incontinence is presented that may aid clinicians in the diagnosis of this rare clinical entity. Motor weakness, central enhancement, and immunohistochemistry may assist in the diagnosis of MPNST and differentiation between benign peripheral nerve sheath tumor (BPNST and MPNST.

  8. On the upper bound in the Bohm sheath criterion

    Kotelnikov, I. A., E-mail: I.A.Kotelnikov@inp.nsk.su; Skovorodin, D. I., E-mail: D.I.Skovorodin@inp.nsk.su [Russian Academy of Sciences, Budker Institute of Nuclear Physics, Siberian Branch (Russian Federation)

    2016-02-15

    The question is discussed about the existence of an upper bound in the Bohm sheath criterion, according to which the Debye sheath at the interface between plasma and a negatively charged electrode is stable only if the ion flow velocity in plasma exceeds the ion sound velocity. It is stated that, with an exception of some artificial ionization models, the Bohm sheath criterion is satisfied as an equality at the lower bound and the ion flow velocity is equal to the speed of sound. In the one-dimensional theory, a supersonic flow appears in an unrealistic model of a localized ion source the size of which is less than the Debye length; however, supersonic flows seem to be possible in the two- and three-dimensional cases. In the available numerical codes used to simulate charged particle sources with a plasma emitter, the presence of the upper bound in the Bohm sheath criterion is not supposed; however, the correspondence with experimental data is usually achieved if the ion flow velocity in plasma is close to the ion sound velocity.

  9. Electron sheath collapse in an applied-B ion diode

    Grechikha, A V [Forschungszentrum Karlsruhe (Germany). Institut fuer Neutronenphysik und Reaktortechnik

    1997-12-31

    The effect of the electron sheath collapse in an applied-B ion diode due to the presence of the resistive anode plasma layer was found. This effect is more damaging at higher diode voltages and may be responsible for the parasitic load effect observed in the experiments. (author). 4 figs., 2 refs.

  10. Internal pressure effects in the AIRCO-LCT conductor sheath

    Luton, J.N.; Clinard, J.A.; Lue, J.W.; Gray, W.H.; Summers, L.T.; Kershaw, R.

    1985-01-01

    The large Nb 3 Sn superconducting test coil produced by Westinghouse Electric Corporation for the international Large Coil Task (LCT) utilizes a conductor composed of cabled multifilamentary strands immersed in flowing supercritical helium contained by a square structural sheath made of the high-strength stainless alloy JBX-75. Peak pressures of a few hundred atmospheres are predicted to occur during quench, and measurement of these pressures seems feasible only through penetrations of the sheath wall. Fully processed short lengths of conductor were taken from production ends, fitted with pressure taps and strain gauges, and pressurized with helium gas. Failure, at 1000 atm at liquid nitrogen temperature, was by a catastrophic splitting of the sheath at a corner. Strain measurements and burst pressure agreed with elastic-plastic finite element stress calculations made for the sheath alone. Neither the production seam weld nor the pressure tap penetrations or their fillet welds contributed to the failure, although the finite element calculations show that these areas were also highly stressed, and examination of the failed sample showed that the finite welds were of poor quality. Failure was by tensile overload, with no evidence of fatigue

  11. A network approach to predict pathogenic genes for Fusarium graminearum.

    Liu, Xiaoping; Tang, Wei-Hua; Zhao, Xing-Ming; Chen, Luonan

    2010-10-04

    Fusarium graminearum is the pathogenic agent of Fusarium head blight (FHB), which is a destructive disease on wheat and barley, thereby causing huge economic loss and health problems to human by contaminating foods. Identifying pathogenic genes can shed light on pathogenesis underlying the interaction between F. graminearum and its plant host. However, it is difficult to detect pathogenic genes for this destructive pathogen by time-consuming and expensive molecular biological experiments in lab. On the other hand, computational methods provide an alternative way to solve this problem. Since pathogenesis is a complicated procedure that involves complex regulations and interactions, the molecular interaction network of F. graminearum can give clues to potential pathogenic genes. Furthermore, the gene expression data of F. graminearum before and after its invasion into plant host can also provide useful information. In this paper, a novel systems biology approach is presented to predict pathogenic genes of F. graminearum based on molecular interaction network and gene expression data. With a small number of known pathogenic genes as seed genes, a subnetwork that consists of potential pathogenic genes is identified from the protein-protein interaction network (PPIN) of F. graminearum, where the genes in the subnetwork are further required to be differentially expressed before and after the invasion of the pathogenic fungus. Therefore, the candidate genes in the subnetwork are expected to be involved in the same biological processes as seed genes, which imply that they are potential pathogenic genes. The prediction results show that most of the pathogenic genes of F. graminearum are enriched in two important signal transduction pathways, including G protein coupled receptor pathway and MAPK signaling pathway, which are known related to pathogenesis in other fungi. In addition, several pathogenic genes predicted by our method are verified in other pathogenic fungi, which

  12. Genome comparison of the epiphytic bacteria Erwinia billingiae and E. tasmaniensis with the pear pathogen E. pyrifoliae

    Kuhl Heiner

    2010-06-01

    Full Text Available Abstract Background The genus Erwinia includes plant-associated pathogenic and non-pathogenic Enterobacteria. Important pathogens such as Erwinia amylovora, the causative agent of fire blight and E. pyrifoliae causing bacterial shoot blight of pear in Asia belong to this genus. The species E. tasmaniensis and E. billingiae are epiphytic bacteria and may represent antagonists for biocontrol of fire blight. The presence of genes that are putatively involved in virulence in E. amylovora and E. pyrifoliae is of special interest for these species in consequence. Results Here we provide the complete genome sequences of the pathogenic E. pyrifoliae strain Ep1/96 with a size of 4.1 Mb and of the non-pathogenic species E. billingiae strain Eb661 with a size of 5.4 Mb, de novo determined by conventional Sanger sequencing and next generation sequencing techniques. Genome comparison reveals large inversions resulting from homologous recombination events. Furthermore, comparison of deduced proteins highlights a relation of E. billingiae strain Eb661 to E. tasmaniensis strain Et1/99 and a distance to E. pyrifoliae for the overall gene content as well as for the presence of encoded proteins representing virulence factors for the pathogenic species. Pathogenicity of E. pyrifoliae is supposed to have evolved by accumulation of potential virulence factors. E. pyrifoliae carries factors for type III secretion and cell invasion. Other genes described as virulence factors for E. amylovora are involved in the production of exopolysaccharides, the utilization of plant metabolites such as sorbitol and sucrose. Some virulence-associated genes of the pathogenic species are present in E. tasmaniensis but mostly absent in E. billingiae. Conclusion The data of the genome analyses correspond to the pathogenic lifestyle of E. pyrifoliae and underlines the epiphytic localization of E. tasmaniensis and E. billingiae as a saprophyte.

  13. Malignant peripheral nerve sheath tumour of the bladder associated with neurofibromatosis I.

    O'Brien, Julie

    2008-12-01

    Neurofibromatosis is a hamartomatous disorder of autonomic peripheral nerve sheaths associated with peripheral nerve sheath tumours. Most tumours are neurofibromas; however, the genitourinary system is rarely involved. We present a rare case of a nerve sheath tumour of the bladder in a young patient, which was discovered to be malignant.

  14. 30 CFR 15.32 - Tolerances for weight of explosive, sheath, wrapper, and specific gravity.

    2010-07-01

    ..., wrapper, and specific gravity. 15.32 Section 15.32 Mineral Resources MINE SAFETY AND HEALTH ADMINISTRATION... explosive, sheath, wrapper, and specific gravity. (a) The weight of the explosive, the sheath, and the outer.... (c) The specific gravity of the explosive and sheath shall be within ±7.5 percent of that specified...

  15. File list: His.Neu.50.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available His.Neu.50.AllAg.Nerve_Sheath_Neoplasms mm9 Histone Neural Nerve Sheath Neoplasms h...ttp://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/His.Neu.50.AllAg.Nerve_Sheath_Neoplasms.bed ...

  16. File list: ALL.Neu.50.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available ALL.Neu.50.AllAg.Nerve_Sheath_Neoplasms mm9 All antigens Neural Nerve Sheath Neopla...sms SRX337965 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/ALL.Neu.50.AllAg.Nerve_Sheath_Neoplasms.bed ...

  17. File list: Oth.Neu.05.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Oth.Neu.05.AllAg.Nerve_Sheath_Neoplasms mm9 TFs and others Neural Nerve Sheath Neop...lasms SRX337965 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Neu.05.AllAg.Nerve_Sheath_Neoplasms.bed ...

  18. File list: Pol.Neu.50.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Pol.Neu.50.AllAg.Nerve_Sheath_Neoplasms mm9 RNA polymerase Neural Nerve Sheath Neop...lasms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Neu.50.AllAg.Nerve_Sheath_Neoplasms.bed ...

  19. File list: Oth.Neu.50.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Oth.Neu.50.AllAg.Nerve_Sheath_Neoplasms mm9 TFs and others Neural Nerve Sheath Neop...lasms SRX337965 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Neu.50.AllAg.Nerve_Sheath_Neoplasms.bed ...

  20. File list: Pol.Neu.20.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Pol.Neu.20.AllAg.Nerve_Sheath_Neoplasms mm9 RNA polymerase Neural Nerve Sheath Neop...lasms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Neu.20.AllAg.Nerve_Sheath_Neoplasms.bed ...

  1. File list: His.Neu.05.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available His.Neu.05.AllAg.Nerve_Sheath_Neoplasms mm9 Histone Neural Nerve Sheath Neoplasms h...ttp://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/His.Neu.05.AllAg.Nerve_Sheath_Neoplasms.bed ...

  2. File list: Oth.Neu.20.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Oth.Neu.20.AllAg.Nerve_Sheath_Neoplasms mm9 TFs and others Neural Nerve Sheath Neop...lasms SRX337965 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Neu.20.AllAg.Nerve_Sheath_Neoplasms.bed ...

  3. File list: DNS.Neu.10.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available DNS.Neu.10.AllAg.Nerve_Sheath_Neoplasms mm9 DNase-seq Neural Nerve Sheath Neoplasms... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/DNS.Neu.10.AllAg.Nerve_Sheath_Neoplasms.bed ...

  4. File list: Unc.Neu.50.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Unc.Neu.50.AllAg.Nerve_Sheath_Neoplasms mm9 Unclassified Neural Nerve Sheath Neopla...sms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Unc.Neu.50.AllAg.Nerve_Sheath_Neoplasms.bed ...

  5. File list: DNS.Neu.05.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available DNS.Neu.05.AllAg.Nerve_Sheath_Neoplasms mm9 DNase-seq Neural Nerve Sheath Neoplasms... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/DNS.Neu.05.AllAg.Nerve_Sheath_Neoplasms.bed ...

  6. File list: ALL.Neu.20.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available ALL.Neu.20.AllAg.Nerve_Sheath_Neoplasms mm9 All antigens Neural Nerve Sheath Neopla...sms SRX337965 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/ALL.Neu.20.AllAg.Nerve_Sheath_Neoplasms.bed ...

  7. File list: Pol.Neu.10.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Pol.Neu.10.AllAg.Nerve_Sheath_Neoplasms mm9 RNA polymerase Neural Nerve Sheath Neop...lasms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Neu.10.AllAg.Nerve_Sheath_Neoplasms.bed ...

  8. File list: Unc.Neu.05.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Unc.Neu.05.AllAg.Nerve_Sheath_Neoplasms mm9 Unclassified Neural Nerve Sheath Neopla...sms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Unc.Neu.05.AllAg.Nerve_Sheath_Neoplasms.bed ...

  9. File list: DNS.Neu.50.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available DNS.Neu.50.AllAg.Nerve_Sheath_Neoplasms mm9 DNase-seq Neural Nerve Sheath Neoplasms... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/DNS.Neu.50.AllAg.Nerve_Sheath_Neoplasms.bed ...

  10. File list: DNS.Neu.20.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available DNS.Neu.20.AllAg.Nerve_Sheath_Neoplasms mm9 DNase-seq Neural Nerve Sheath Neoplasms... http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/DNS.Neu.20.AllAg.Nerve_Sheath_Neoplasms.bed ...

  11. File list: His.Neu.20.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available His.Neu.20.AllAg.Nerve_Sheath_Neoplasms mm9 Histone Neural Nerve Sheath Neoplasms h...ttp://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/His.Neu.20.AllAg.Nerve_Sheath_Neoplasms.bed ...

  12. File list: Oth.Neu.10.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Oth.Neu.10.AllAg.Nerve_Sheath_Neoplasms mm9 TFs and others Neural Nerve Sheath Neop...lasms SRX337965 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Neu.10.AllAg.Nerve_Sheath_Neoplasms.bed ...

  13. File list: ALL.Neu.10.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available ALL.Neu.10.AllAg.Nerve_Sheath_Neoplasms mm9 All antigens Neural Nerve Sheath Neopla...sms SRX337965 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/ALL.Neu.10.AllAg.Nerve_Sheath_Neoplasms.bed ...

  14. File list: Unc.Neu.20.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Unc.Neu.20.AllAg.Nerve_Sheath_Neoplasms mm9 Unclassified Neural Nerve Sheath Neopla...sms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Unc.Neu.20.AllAg.Nerve_Sheath_Neoplasms.bed ...

  15. File list: His.Neu.10.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available His.Neu.10.AllAg.Nerve_Sheath_Neoplasms mm9 Histone Neural Nerve Sheath Neoplasms h...ttp://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/His.Neu.10.AllAg.Nerve_Sheath_Neoplasms.bed ...

  16. File list: Pol.Neu.05.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available Pol.Neu.05.AllAg.Nerve_Sheath_Neoplasms mm9 RNA polymerase Neural Nerve Sheath Neop...lasms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Pol.Neu.05.AllAg.Nerve_Sheath_Neoplasms.bed ...

  17. File list: ALL.Neu.05.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available ALL.Neu.05.AllAg.Nerve_Sheath_Neoplasms mm9 All antigens Neural Nerve Sheath Neopla...sms SRX337965 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/ALL.Neu.05.AllAg.Nerve_Sheath_Neoplasms.bed ...

  18. Silício alterando compostos derivados da pirólise de bainhas foliares de plantas de arroz infectadas por Rhizoctonia solani Silicon altering compounds derived from the pyrolyses of leaf sheaths of rice plants infected with Rhizoctonia solani

    Daniel Augusto Schurt

    2013-01-01

    (2.7 dag kg-1 as compared to non-supplied plants (0.45 dag kg-1. In the presence of Si, the area under leaf sheath blight progress curve was significantly reduced by 19 and 25% for plants from cultivars BR-Irga 409 and Labelle, respectively, in comparison to the absence of Si. Based on the mass spectra obtained, 33 compounds were identified, 10 of which were products from the degradation of carbohydrates and 23 derivate from lignin. From lignin derivatives, eight compounds were p-hydroxiphenil type, eleven compounds were guaiacyl type and four compounds were syringyl type. On leaf sheaths of both cultivars, the concentration of lignin (p-hydroxiphenil, syringyl (S and guaiacyl (G was around 15%, regardless of Si. There was no increase in the S/G ratio only for the leaf sheaths of BR-Irga 409 supplied with Si and infected with R. solani. High Si concentration on leaf sheaths of both cultivars, which in turn resulted in an increase in the S/G ratio, contributed to reduce leaf sheath blight symptoms.

  19. Fusarium head blight incidence and mycotoxin accumulation in three durum wheat cultivars in relation to sowing date and density

    Gorczyca, Anna; Oleksy, Andrzej; Gala-Czekaj, Dorota; Urbaniak, Monika; Laskowska, Magdalena; Waśkiewicz, Agnieszka; Stępień, Łukasz

    2018-02-01

    Durum wheat ( Triticum turgidum var. durum) is an important crop in Europe, particularly in the Mediterranean countries. Fusarium head blight (FHB) is considered as one of the most damaging diseases, resulting in yield and quality reduction as well as contamination of grain with mycotoxins. Three winter durum wheat cultivars originating from Austria, Slovakia, and Poland were analyzed during 2012-2014 seasons for FHB incidence and Fusarium mycotoxin accumulation in harvested grain. Moreover, the effects of sowing density and delayed sowing date were evaluated in the climatic conditions of Southern Poland. Low disease severity was observed in 2011/2012 in all durum wheat cultivars analyzed, and high FHB occurrence was recorded in 2012/2013 and 2013/2014 seasons. Fusarium graminearum was the most abundant pathogen, followed by Fusarium avenaceum. Through all three seasons, cultivar Komnata was the most susceptible to FHB and to mycotoxin accumulation, while cultivars Auradur and IS Pentadur showed less symptoms. High susceptibility of cv. Komnata was reflected by the number of Fusarium isolates and elevated mycotoxin (deoxynivalenol, zearalenone, and moniliformin) content in the grain of this cultivar across all three seasons. Nivalenol was identified in the samples of cv. Komnata only. Genotype-dependent differences in FHB susceptibility were observed for the plants sown at optimal date but not at delayed sowing date. It can be hypothesized that cultivars bred in Austria and Slovakia show less susceptibility towards FHB than the cultivar from Poland because of the environmental conditions allowing for more efficient selection of breeding materials.

  20. Screening of wheat endophytes as biological control agents against Fusarium head blight using two different in vitro tests.

    Comby, Morgane; Gacoin, Marie; Robineau, Mathilde; Rabenoelina, Fanja; Ptas, Sébastien; Dupont, Joëlle; Profizi, Camille; Baillieul, Fabienne

    2017-09-01

    In order to find biological control agents (BCAs) for the management of Fusarium head blight (FHB), a major disease on wheat crops worldwide, 86 microorganisms isolated from inner tissues of wheat plants were discriminated for their ability to inhibit the growth of Fusarium graminearum and Fusarium culmorum by in vitro dual culture assays. A group of 22 strains appeared very effective to inhibit F. graminearum (inhibition of 30-51%) and they were also globally effective in controlling F. culmorum (inhibition of 15-53%). Further evaluation of a subselection of strains by screening on detached spikelets in vitro confirmed three species, namely Phoma glomerata, Aureobasidium proteae and Sarocladium kiliense, that have not yet been reported for their efficacy against Fusarium spp., indicating that looking for BCAs toward FHB among wheat endophytes proved to be promising. The efficacy of some strains turned out different between both in vitro screening approaches, raising the importance of finding the most appropriate screening approach for the search of BCAs. This study pointed out the interest of the test on detached wheat spikelets that provided information about a potential pathogenicity, the growth capacity and efficacy of the endophyte strains on the targeted plant, before testing them on whole plants. Copyright © 2017 Elsevier GmbH. All rights reserved.

  1. Soil Baiting, Rapid PCR Assay and Quantitative Real Time PCR to Diagnose Late Blight of Potato in Quarantine Programs

    Touseef Hussain

    2018-05-01

    Full Text Available Phytophthora infestans (mont de Bary is a pathogen of great concern across the globe, and accurate detection is an important component in responding to the outbreaks of potential disease. Although the molecular diagnostic protocol used in regulatory programs has been evaluated but till date methods implying direct comparison has rarely used. In this study, a known area soil samples from potato fields where light blight appear every year (both A1 and A2 mating type was assayed by soil bait method, PCR assay detection and quantification of the inoculums. Suspected disease symptoms appeared on bait tubers were further confirmed by rapid PCR, inoculums were quantified through Real Time PCR, which confirms presence of P. infestans. These diagnostic methods can be highly correlated with one another. Potato tuber baiting increased the sensitivity of the assay compared with direct extraction of DNA from tuber and soil samples. Our study determines diagnostic sensitivity and specificity of the assays to determine the performance of each method. Overall, molecular techniques based on different types of PCR amplification and Real-time PCR can lead to high throughput, faster and more accurate detection method which can be used in quarantine programmes in potato industry and diagnostic laboratory.

  2. Genetic mapping of ascochyta blight resistance in chickpea (Cicer arietinum L.) using a simple sequence repeat linkage map.

    Tar'an, B; Warkentin, T D; Tullu, A; Vandenberg, A

    2007-01-01

    Ascochyta blight, caused by the fungus Ascochyta rabiei (Pass.) Lab., is one of the most devastating diseases of chickpea (Cicer arietinum L.) worldwide. Research was conducted to map genetic factors for resistance to ascochyta blight using a linkage map constructed with 144 simple sequence repeat markers and 1 morphological marker (fc, flower colour). Stem cutting was used to vegetatively propagate 186 F2 plants derived from a cross between Cicer arietinum L. 'ICCV96029' and 'CDC Frontier'. A total of 556 cutting-derived plants were evaluated for their reaction to ascochyta blight under controlled conditions. Disease reaction of the F1 and F2 plants demonstrated that the resistance was dominantly inherited. A Fain's test based on the means and variances of the ascochyta blight reaction of the F3 families showed that a few genes were segregating in the population. Composite interval mapping identified 3 genomic regions that were associated with the reaction to ascochyta blight. One quantitative trait locus (QTL) on each of LG3, LG4, and LG6 accounted for 13%, 29%, and 12%, respectively, of the total estimated phenotypic variation for the reaction to ascochyta blight. Together, these loci controlled 56% of the total estimated phenotypic variation. The QTL on LG4 and LG6 were in common with the previously reported QTL for ascochyta blight resistance, whereas the QTL on LG3 was unique to the current population.

  3. Induction of Xa10-like Genes in Rice Cultivar Nipponbare Confers Disease Resistance to Rice Bacterial Blight.

    Wang, Jun; Tian, Dongsheng; Gu, Keyu; Yang, Xiaobei; Wang, Lanlan; Zeng, Xuan; Yin, Zhongchao

    2017-06-01

    Bacterial blight of rice, caused by Xanthomonas oryzae pv. oryzae, is one of the most destructive bacterial diseases throughout the major rice-growing regions in the world. The rice disease resistance (R) gene Xa10 confers race-specific disease resistance to X. oryzae pv. oryzae strains that deliver the corresponding transcription activator-like (TAL) effector AvrXa10. Upon bacterial infection, AvrXa10 binds specifically to the effector binding element in the promoter of the R gene and activates its expression. Xa10 encodes an executor R protein that triggers hypersensitive response and activates disease resistance. 'Nipponbare' rice carries two Xa10-like genes in its genome, of which one is the susceptible allele of the Xa23 gene, a Xa10-like TAL effector-dependent executor R gene isolated recently from 'CBB23' rice. However, the function of the two Xa10-like genes in disease resistance to X. oryzae pv. oryzae strains has not been investigated. Here, we designated the two Xa10-like genes as Xa10-Ni and Xa23-Ni and characterized their function for disease resistance to rice bacterial blight. Both Xa10-Ni and Xa23-Ni provided disease resistance to X. oryzae pv. oryzae strains that deliver the matching artificially designed TAL effectors (dTALE). Transgenic rice plants containing Xa10-Ni and Xa23-Ni under the Xa10 promoter provided specific disease resistance to X. oryzae pv. oryzae strains that deliver AvrXa10. Xa10-Ni and Xa23-Ni knock-out mutants abolished dTALE-dependent disease resistance to X. oryzae pv. oryzae. Heterologous expression of Xa10-Ni and Xa23-Ni in Nicotiana benthamiana triggered cell death. The 19-amino-acid residues at the N-terminal regions of XA10 or XA10-Ni are dispensable for their function in inducing cell death in N. benthamiana and the C-terminal regions of XA10, XA10-Ni, and XA23-Ni are interchangeable among each other without affecting their function. Like XA10, both XA10-Ni and XA23-Ni locate to the endoplasmic reticulum (ER) membrane

  4. Combining Ascochyta blight and Botrytis grey mould resistance in chickpea through interspecific hybridization

    Livinder KAUR

    2013-05-01

    Full Text Available Ascochyta blight (AB caused by Ascochyta rabiei (Pass. Labr. and Botrytis grey mould (BGM caused by Botrytis cinerea (Pers. ex Fr. are important diseases of the aerial plant parts of chickpea in most chickpea growing areas of the world. Although conventional approaches have contributed to reducing disease, the use of new technologies is expected to further reduce losses through these biotic stresses. Reliable screening techniques were developed: ‘field screening technique’ for adult plant screening, ‘cloth chamber technique’ and ‘growth chamber technique’ for the study of races of the pathogen and for segregating generations. Furthermore, the ‘cut twig technique’ for interspecific population for AB and BGM resistance was developed. For introgression of high levels of AB and BGM resistance in cultivated chickpea from wild relatives, accessions of seven annual wild Cicer spp. were evaluated and identified: C. judaicum accessions 185, ILWC 95 and ILWC 61, C. pinnatifidum accessions 188, 199 and ILWC 212 as potential donors. C. pinnatifidum accession188 was crossed with ICCV 96030 and 62 F9 lines resistant to AB and BGM were derived. Of the derived lines, several are being evaluated for agronomic traits and yield parameters while four lines, GL 29029, GL29206, GL29212, GL29081 possessing high degree of resistance were crossed with susceptible high yielding cultivars BG 256 to improve resistance and to undertake molecular studies. Genotyping of F2 populations with SSR markers from the chickpea genome was done to identify markers potentially linked with AB and BGM resistance genes. In preliminary studies, of 120 SSR markers used, six (Ta 2, Ta 110, Ta 139, CaSTMS 7, CaSTMS 24 and Tr 29 were identified with polymorphic bands between resistant derivative lines and the susceptible parent. The study shows that wild species of Cicer are the valuable gene pools of resistance to AB and BGM. The resistant derivative lines generated here can

  5. Electric fields in the sheath formed in a 300 mm, dual frequency capacitive argon discharge

    Barnat, E V; Miller, P A; Hebner, G A; Paterson, A M; Panagopoulos, T; Hammond, E; Holland, J

    2007-01-01

    The spatial structure and temporal evolution of the electric fields in a sheath formed in a dual frequency, 300 mm capacitive argon discharge are measured as functions of relative mixing between a low frequency current and a high frequency current. It is found that the overall structure of the sheath (potential across the sheath and the thickness of the sheath) are dominated by the lower frequency component while (smaller) oscillations in these quantities are dictated by the higher frequency component. Comparisons of the measured spatial and temporal profiles are made for Lieberman's and Robiche et al sheath model and with a particle in a cell calculation

  6. Relative Susceptibility of Quince, Pear, and Apple Cultivars to Fire Blight Following Greenhouse Inoculation

    Fire blight caused by Erwinia amylovora (EA) is one of the most serious diseases of plants in the family Rosaceae, and Quince (Cydonia oblonga Mill.) is considered one of the most susceptible host genera. Apple (Malus sp.) and pear (Pyrus sp.) cultivars ranging from most susceptible to most resistan...

  7. Polymorphic sequence-characterized codominant loci in the chestnut blight fungus, Cryphonectria parasitica

    J. E. Davis; Thomas L. Kubisiak; M. G. Milgroom

    2005-01-01

    Studies on the population biology of the chestnut blight fungus, Cryphonectria parasitica, have previously been carried out with dominant restriction fragment length polymorphism (RFLP) fingerprinting markers. In this study, we described the development of 11 condominant markers from randomly amplified polymorphic DNAs (RAPDs). RAPD fragments were...

  8. IDENTIFICATION AND QUANTIFICATION OF DIFFERENTIALLY EXPRESSED GENES ASSOCIATED WITH CITRUS BLIGHT (Citrus spp.

    José Renato de Abreu

    2015-02-01

    Full Text Available Brazil is the largest citrus producer in the world, being responsible for more than 20% of its production, which is, however still low due to phytosanitary issues such as citrus blight. Citrus blight is an anomaly whose causes still have not yet been determined, therefore there are no efficient control measures to minimize the production losses with the use of resistant varieties being considered the most appropriate method. However, little is known about the genes involved in the defense response of the plants to this anomaly. Considering that many physiological alterations associated with plant stress responses are controlled at a transcriptional level, in this study we sought the identification and characterization of the gene expression products differentially expressed in the response to the citrus blight. Through the suppressive subtractive hybridization technique, expressed cDNA libraries were built using mRNAs isolated from "Cravo" lemon tree roots (Citrus limonia L. Osbeck under "Pera" orange (Citrus sinensis L. Osbeck of healthy and sick plants. 129 clones were obtained by subtraction and their sequences were compared in databases. 34 of them linked to proteins associated to stress processes, while the others were similar to sequences of unknown functions or did not present similarity with sequences deposited in the databases. 3 genes were selected and their expressions were studied by RT - qPCR in real-time. Plants with citrus blight presented an increase of the expression level in two of those genes, suggesting that these can be directly involved with this anomaly.

  9. Aspects of resistance to fusarium head blight caused by Fusarium culmorum in wheat

    Snijders, C.H.A.

    1990-01-01

    In the Netherlands, Fusarium head blight of wheat is predominantly caused by Fusarium culmorum . A low infection level leads to important yield losses and contaminates the grain with mycotoxins, particularly deoxynivalenol. This mycotoxin is suggested to have toxic

  10. Fusarium spp. associated with head blight of wheat in South Africa

    Fusarium head blight (FHB) of wheat is caused by numerous Fusarium species, including trichothecene-producers. In South Africa, FHB is mostly associated with irrigated wheat rotated with maize. Twenty symptomatic wheat heads were collected from four cultivars each in irrigated fields in the Northern...

  11. Ranking cultivated blueberry for Mummy Berry Blight and Fruit Infection Incidence

    Mummy berry is an important disease of cultivated blueberry. The disease has two distinct phases; a blighting phase initiated by ascospores and a fruit infection stage initiated by conidia. In this study we investigated the resistance of more than 100 blueberry cultivar to both phases of the disease...

  12. In Vitro Screening of Antibacterial Agents for Suppression of Fire Blight Disease in Korea

    Min Su Lee

    2018-03-01

    Full Text Available Since fire blight disease on apple and pear was produced in Korea in 2015, there were no registered chemicals to control against this disease. Instead, several antibacterial chemicals that were registered for other bacterial diseases such as soft rot and bacterial spot have been authorized by Rural Development Administration (RDA. However, these chemicals are not tested efficacy for fire blight disease except damage by those treatments on apple and pear in Korea. Thus, we evaluated efficiency using in vitro and in planta assays of antibacterial chemicals such as antibiotics and copper compounds including kasugamycin, oxytetracycline, oxolinic acid and streptomycin, and copper hydroxide, copper sulfate, oxine copper and tribasic copper sulfate, respectively. We also tested two kinds of biological agents. As expected, significant antibacterial effect was observed in vitro test of both antibiotics and copper-based chemicals. In planta test based on disease severity including ooze and water-soaked formation on immature pears, bacterial populations on blooms, and blight lesion formation in artificially inoculated shoots, kasugamycin, oxytetracycline and streptomycin have been shown the most efficiency among tested antibiotics. Four copper-based chemicals tested in this study, control effects are little bit lower than agricultural antibiotics but they seem to be available to use in terms of winter season. Biocontrol agents were also shown possibility to treat in eco-friendly farms. In addition, there are no antibiotic resistance genes in Korean isolates against antibiotics, which were selected for suppression of fire blight in this study.

  13. Toward positional cloning of Fhb1, a major QTL for Fusarium head blight resistance in wheat

    Liu, S. X.; Pumphrey, M. O.; Gill, B. S.; Trick, H. N.; Zhang, J. X.; Doležel, Jaroslav; Chalhoub, B.; Anderson, J. A.

    2008-01-01

    Roč. 36, suppl. B (2008), s. 195-201 ISSN 0133-3720 Institutional research plan: CEZ:AV0Z50380511 Keywords : map-based cloning * Fusarium head blight * Fhb1 Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 1.190, year: 2007

  14. QTL identification for early blight resistance (Alternaria solani) in a Solanum lycopersicum x S. arcanum cross.

    Chaerani, R.; Smulders, M.J.M.; Linden, van der C.G.; Vosman, B.; Stam, P.; Voorrips, R.E.

    2007-01-01

    Alternaria solani (Ellis and Martin) Sorauer, the causal agent of early blight (EB) disease, infects aerial parts of tomato at both seedling and adult plant stages. Resistant cultivars would facilitate a sustainable EB management. EB resistance is a quantitatively expressed character, a fact that

  15. Investigation of the effect of nitrogen on severity of Fusarium Head Blight in barley

    Yang, Fen; Jensen, J.D.; Spliid, N.H.

    2010-01-01

    The effect of nitrogen on Fusarium Head Blight (FHB) in a susceptible barley cultivar was investigated using gel-based proteomics. Barley grown with either 15 or 100 kg ha(-1)N fertilizer was inoculated with Fusarium graminearum (Fg). The storage protein fraction did not change significantly...

  16. Bringing Benefits and Warding off Blights in Due Commandment (Analytic Study Compared with the Jordanian Law)

    Al Etoum, Niebal Mohd Ibrahim; Mowafi, Hanan Sami Mohammad; Al Zubaidi, Faraj Hamad Salem

    2016-01-01

    The study aims to highlight the benefits and blights of the due commandment (intestate law) under Jordanian law for the year (2010) in the article (279). The study came in two sections, the first one dealt with the concept of due commandment, its legitimacy, verdict and terms; in the second section, I've dealt with the persons entitled to due…

  17. Shoot Blight and Leaf Spot of Blueberry Anthracnose Caused by Colletotrichum acutatum

    Shigenobu, YOSHIDA; Takao, TSUKIBOSHI; National Institute for Agro-Environmental Sciences; National Institute for Agro-Environmental Sciences

    2002-01-01

    Shoot blight and leaf spots were found on highbush blueberry trees in Tsukuba, Ibaraki, in 1999. The causal fungus was identified morphologically as Colletotrichum acutatum Simmonds ex Simmonds. This is the first report of blueberry anthracnose caused by C. acutatum in Japan.

  18. Molecular mapping of resistance to blight in an interspecific cross in the genus Castanea

    Thomas L. Kubisiak; F.V. Hebard; C. Dana Nelson; Jiansu Zhang; R. Bernatzky; H. Huang; S.L. Anagnostakis; R.L. Doudrick

    1997-01-01

    A three-generation American chestnut x Chinese chestnut pedigree was used to construct a genetic linkage map for chestnut and to investigate the control of resistance to Endothia parasitica (chestnut blight fungus). DNA genotypes for 241 polymorphic markers (eight isozymes, 17 restriction fragment length polymorphisms [RFLPs], and 216 random...

  19. Large-spored Alternaria pathogens in section Porri disentangled.

    Woudenberg, J H C; Truter, M; Groenewald, J Z; Crous, P W

    2014-09-01

    The omnipresent fungal genus Alternaria was recently divided into 24 sections based on molecular and morphological data. Alternaria sect. Porri is the largest section, containing almost all Alternaria species with medium to large conidia and long beaks, some of which are important plant pathogens (e.g. Alternaria porri, A. solani and A. tomatophila). We constructed a multi-gene phylogeny on parts of the ITS, GAPDH, RPB2, TEF1 and Alt a 1 gene regions, which, supplemented with morphological and cultural studies, forms the basis for species recognition in sect. Porri. Our data reveal 63 species, of which 10 are newly described in sect. Porri, and 27 species names are synonymised. The three known Alternaria pathogens causing early blight on tomato all cluster in one clade, and are synonymised under the older name, A. linariae. Alternaria protenta, a species formerly only known as pathogen on Helianthus annuus, is also reported to cause early blight of potato, together with A. solani and A. grandis. Two clades with isolates causing purple blotch of onion are confirmed as A. allii and A. porri, but the two species cannot adequately be distinguished based on the number of beaks and branches as suggested previously. This is also found among the pathogens of Passifloraceae, which are reduced from four to three species. In addition to the known pathogen of sweet potato, A. bataticola, three more species are delineated of which two are newly described. A new Alternaria section is also described, comprising two large-spored Alternaria species with concatenate conidia.

  20. Molecular Characterization and Functional Analysis of PR-1-Like Proteins Identified from the Wheat Head Blight Fungus Fusarium graminearum.

    Lu, Shunwen; Edwards, Michael C

    2018-04-01

    The group 1 pathogenesis-related (PR-1) proteins originally identified from plants and their homologs are also found in other eukaryotic kingdoms. Studies on nonplant PR-1-like (PR-1L) proteins have been pursued widely in humans and animals but rarely in filamentous ascomycetes. Here, we report the characterization of four PR-1L proteins identified from the ascomycete fungus Fusarium graminearum, the primary cause of Fusarium head blight of wheat and barley (designated FgPR-1L). Molecular cloning revealed that the four FgPR-1L proteins are all encoded by small open reading frames (612 to 909 bp) that are often interrupted by introns, in contrast to plant PR-1 genes that lack introns. Sequence analysis indicated that all FgPR-1L proteins contain the PR-1-specific three-dimensional structure, and one of them features a C-terminal transmembrane (TM) domain that has not been reported for any stand-alone PR-1 proteins. Transcriptional analysis revealed that the four FgPR-1L genes are expressed in axenic cultures and in planta with different spatial or temporal expression patterns. Phylogenetic analysis indicated that fungal PR-1L proteins fall into three major groups, one of which harbors FgPR-1L-2-related TM-containing proteins from both phytopathogenic and human-pathogenic ascomycetes. Low-temperature sodium dodecyl sulfate polyacrylamide gel electrophoresis and proteolytic assays indicated that the recombinant FgPR-1L-4 protein exists as a monomer and is resistant to subtilisin of the serine protease family. Functional analysis confirmed that deletion of the FgPR-1L-4 gene from the fungal genome results in significantly reduced virulence on susceptible wheat. This study provides the first example that the F. graminearum-wheat interaction involves a pathogen-derived PR-1L protein that affects fungal virulence on the host.

  1. In vitro and in vivo effect of poplar bud (Populi gemma Extracts on late blight (Phytophthora infestans

    Bálint János

    2014-11-01

    Full Text Available The effect of populin extract from black poplar (Populus nigra on late blight was assessed under laboratory and field conditions. The growth rate of hyphae was found to be significantly lower after 1v/v% populin application, and no hyphae growth was detected under 3 and 6v/v% populin application. Populin also reduced the light blight severity on potato leaves under field conditions. From our results, we have concluded that populin extract can be considered as a new and environmentally-friendly alternative for the control of late blight under field conditions.

  2. The magnetized sheath of a dusty plasma with grains size distribution

    Ou, Jing; Gan, Chunyun; Lin, Binbin; Yang, Jinhong

    2015-01-01

    The structure of a plasma sheath in the presence of dust grains size distribution (DGSD) is investigated in the multi-fluid framework. It is shown that effect of the dust grains with different sizes on the sheath structure is a collective behavior. The spatial distributions of electric potential, the electron and ion densities and velocities, and the dust grains surface potential are strongly affected by DGSD. The dynamics of dust grains with different sizes in the sheath depend on not only DGSD but also their radius. By comparison of the sheath structure, it is found that under the same expected value of DGSD condition, the sheath length is longer in the case of lognormal distribution than that in the case of uniform distribution. In two cases of normal and lognormal distributions, the sheath length is almost equal for the small variance of DGSD, and then the difference of sheath length increases gradually with increase in the variance

  3. Gene Expression Profiling of the Intact Dermal Sheath Cup of Human Hair Follicles.

    Niiyama, Shiro; Ishimatsu-Tsuji, Yumiko; Nakazawa, Yosuke; Yoshida, Yuzo; Soma, Tsutomu; Ideta, Ritsuro; Mukai, Hideki; Kishimoto, Jiro

    2018-04-24

    Cells that constitute the dermal papillae of hair follicles might be derived from the dermal sheath, the peribulbar component of which is the dermal sheath cup. The dermal sheath cup is thought to include the progenitor cells of the dermal papillae and possesses hair inductive potential; however, it has not yet been well characterized. This study investigated the gene expression profile of the intact dermal sheath cup, and identified dermal sheath cup signature genes, including extracellular matrix components and BMP-binding molecules, as well as TGF-b1 as an upstream regulator. Among these, GREM2, a member of the BMP antagonists, was found by in situ hybridization to be highly specific to the dermal sheath cup, implying that GREM2 is a key molecule contributing to maintenance of the properties of the dermal sheath cup.

  4. Pathogen intelligence

    Michael eSteinert

    2014-01-01

    Full Text Available Different species inhabit different sensory worlds and thus have evolved diverse means of processing information, learning and memory. In the escalated arms race with host defense, each pathogenic bacterium not only has evolved its individual cellular sensing and behaviour, but also collective sensing, interbacterial communication, distributed information processing, joint decision making, dissociative behaviour, and the phenotypic and genotypic heterogeneity necessary for epidemiologic success. Moreover, pathogenic populations take advantage of dormancy strategies and rapid evolutionary speed, which allow them to save co-generated intelligent traits in a collective genomic memory. This review discusses how these mechanisms add further levels of complexity to bacterial pathogenicity and transmission, and how mining for these mechanisms could help to develop new anti-infective strategies.

  5. FIRE BLIGHT SUSCEPTIBILITY OF SOME PEAR VARIETIES (ERWINIA AMYLOVORA, BURILL

    Zsolt Jakab- Ilyefalv

    2012-01-01

    Full Text Available At Bistriţa Fruit Research and Development Station, in a pear collection, planted with 44 varieties, there has been studied the susceptibility to fire blight (Erwinia amylovora,Burill. During the vegetation period, phytosanitary treatments to control the disease have been applied using copper based products (copper sulfate, Champion, Funguran, Kocide. Erwinia amylovora infections have been influenced by the rainfall registered in April (70.9 mm and May (104.7 mm and the temperature fluctuations in April-May. The field observations on Erwinia amylvora attack demonstrate that the pear varieties have a different susceptibility to this dangerous bacterium. Evaluation of attack level in the pear collection was done using an evaluation scale with 9 scores using a reference resistance scale for : ‘Highly resistant’ , ‘Moderately resistant’, ‘Susceptible’, ‘Very susceptible’ cultivars . The most sensitive pear varieties in the collection were: ‘De Noiembrie’, ‘Abatele Fetel’, ’Daciana’, ’Triumf’, ’Williams Boway’, ’Margareta Marillat’, ’Beauty Tomme’, ‘Williams rosu’, ’Aromata de Bistrita’, ’Jeanne d`Arc’, ’Aramiu de Somes’, ’Belle des Arbres’, ’Zorka’ representing 13.64% of the total pear varieties. In several cultivars there have been observed increased symptoms, a very high susceptibility of infections leading to complete scorching of trees: Jeanne d`Arc’, Williams rosu’, ‘Triumf’, ‘Aromata de Bistrita’, ‘Zorka’. Strong attack symtoms were observed at the pear cultivars ‘Cure’, ‘Euras, ’Ciuda’ ‘Highland’, ‘Precoce Morettini’, ’Monica’, ’Cadillac’, ’Juliana’, ’Somesan’, ’Beurré Hardenpont’ these cultivars being susceptible to Erwinia amylovora , representing 40.91 % of total genotypes . Cultivars ‘Untoasa Geoagiu’, ‘Beurre Hardy’, ‘Trivale’ manifested a certain tolerance to Erwinia amylovora , no attack symptoms being

  6. Genetic Diversity of Alternaria alternata Causal Agent of Early Blight of Tomato in Khuzestan Province Using SSRs Marker

    Khoshnood Nourollahi

    2017-03-01

    Full Text Available Introduction: The early blight of tomato caused by Alternaria alternata is one of the most important and destructive diseases in Khuzestan province. Study genetic structure of A. alternata populations provides different levels of information in the management of early blight disease in tomato farms. Short sequence repeat (SSR markers were used to determine the genetic structure and estimate genetic diversity in A. alternata isolates in Khuzestan province. Materials and Methods: In this study to evaluate the genetic diversity and genetic populations of A. alternata pathogen, sampling was randomly carried out on aerial parts of tomato plants with leaf brown lesions in farms and glasshouses from five different regions in Khuzestan province such as: Shoshtar, Omidiyeh, Dashte azadagan, Ahvaz, and Dezful. Each sample was cut into 2–5-mm long pieces, were surface-sterilized with 1% sodium hypochlorite for 3 min and rinsed three times with sterile distilled water and air-dried with sterile filter paper. The sterilized samples were placed onto a general medium potato dextrose agar (PDA. A total of 64 A. alternata isolates were obtained from infected samples. Pathogenicity test was carried out on local susceptible cultivar under an artificial condition in the greenhouse. For obtaining the mycelia mass, liquid cultures were initiated by adding 2–4 mm 2 pieces of filter paper to 250-mL Erlenmeyer flasks containing 100 mL PDB medium (potato dextrose broth. Mycelium was collected by filtration through sterile filter paper with a vacuum funnel. Mycelia were harvested, frozen and stored at -20°C. DNA was extracted using a modified hexadecyl trimethyl-ammonium bromide (CTAB procedure. A set of five paired sequence repeat primers (SSR were used to determine the genetic diversity of A. alternata isolates. PCR amplification was performed in a 25 μl reaction volume. The bands generated by SSR primers that were repeatable and clearly visible with a high

  7. In vivo engineering of a functional tendon sheath in a hen model.

    Xu, Liang; Cao, Dejun; Liu, Wei; Zhou, Guangdong; Zhang, Wen Jie; Cao, Yilin

    2010-05-01

    Repair of injured tendon sheath remains a major challenge and this study explored the possibility of in vivo reconstruction of a tendon sheath with tendon sheath derived cells and polyglycolic acid (PGA) fibers in a Leghorn hen model. Total 55 Leghorn hens with a 1cm tendon sheath defect created in the left middle toe of each animal were randomly assigned into: (1) experimental group (n=19) that received a cell-PGA construct; (2) scaffold control group (n=18) that received a cell-free PGA scaffold; (3) blank control group (n=18) with the defect untreated. Tendon sheath cells were isolated, in vitro expanded, and seeded onto PGA scaffolds. After in vitro culture for 7 days, the constructs were in vivo implanted to repair the sheath defects. Alcian blue staining confirmed the ability of cultured cells to produce specific matrices containing acidic carboxyl mucopolysaccharide (mainly hyaluronic acid). In addition, the engineered sheath formed a relatively mature structure at 12 weeks post-surgery, which was similar to that of native counterpart, including a smooth inner surface, a well-developed sheath histological structure with a clear space between the tendon and the engineered sheath. More importantly, Work of Flexion assay revealed that the tendons needed less power consumption to glide inside the engineered sheath when compared to the tendons which were surrounded by scar-repaired tissues, indicating that the engineered sheaths had gained the function to a certain extent of preventing tendon adhesion. Taken together, these results suggest that tendon sheaths that are functionally and structurally similar to native sheaths are possible to be engineered in vivo using tendon sheath cells and PGA scaffolds. Copyright 2010 Elsevier Ltd. All rights reserved.

  8. Management of blight of bell pepper (Capsicum annuum var. grossum) caused by Drechslera bicolor.

    Jadon, Kuldeep Singh; Shah, Rakesh; Gour, Hari Narayan; Sharma, Pankaj

    Sweet or bell pepper is a member of the Solanaceae family and is regarded as one of the most popular and nutritious vegetable. Blight, in the form of leaf and fruit blight, has been observed to infect bell pepper crops cultivated at the horticulture farm in Rajasthan College of Agriculture, Udaipur, India. Based on disease severity, we attempted to curb this newly emerged problem using different fungicides, plant extracts, bio-control agents, and commercial botanicals against the fungus in laboratory and pot experiments. Bio-control agent Trichoderma viride and plant growth promoting Rhizobacteria (PGPR) isolate Neist-2 were found to be quite effective against bell pepper blight. All evaluated fungicides, botanicals, commercial botanicals, and bio-control agents in vitro were further studied as seed dressers and two foliar sprays at ten days interval in pot experiments. The combinations of Vitavax, PGPR isolate Neist-2, and Mehandi extract were found to be very effective against bell pepper blight followed by Vitavax, T. viride, and Mehandi extract used individually. All treatments in the pot experiments were found to significantly reduce seedling mortality and enhance plant biomass of bell pepper. Thus, these experimental findings suggest that a better integrated management of bell pepper blight could be achieved by conducting field trials in major bell pepper- and chilli-cultivated areas of the state. Besides fungicides, different botanicals and commercial botanicals also seem to be promising treatment options. Therefore, the outcome of the present study provides an alternate option of fungicide use in minimizing loss caused by Drechslera bicolor. Copyright © 2016 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.

  9. Co-electrospinning fabrication and photocatalytic performance of TiO2/SiO2 core/sheath nanofibers with tunable sheath thickness

    Cao, Houbao; Du, Pingfan; Song, Lixin; Xiong, Jie; Yang, Junjie; Xing, Tonghai; Liu, Xin; Wu, Rongrong; Wang, Minchao; Shao, Xiaoli

    2013-01-01

    Graphical abstract: - Highlights: • The core–sheath TiO 2 /SiO 2 nanofibers were fabricated by co-electrospinning technique. • The catalytic property of nanofibers with different sheath thickness was studied. • The potential methods of improving catalytic efficiency are suggested. - Abstract: In this paper, core/sheath TiO 2 /SiO 2 nanofibers with tunable sheath thickness were directly fabricated via a facile co-electrospinning technique with subsequent calcination at 500 °C. The morphologies and structures of core/sheath TiO 2 /SiO 2 nanofibers were characterized by TGA, FESEM, TEM, FTIR, XPS and BET. It was found that the 1D core/sheath nanofibers are made up of anatase–rutile TiO 2 core and amorphous SiO 2 sheath. The influences of SiO 2 sheath and its thickness on the photoreactivity were evaluated by observing photo-degradation of methylene blue aqueous solution under the irradiation of UV light. Compared with pure TiO 2 nanofibers, the core/sheath TiO 2 /SiO 2 nanofibers performed a better catalytic performance. That was attributed to not only efficient separation of hole–electron pairs resulting from the formation of heterojunction but also larger surface area and surface silanol group which will be useful to provide higher capacity for oxygen adsorption to generate more hydroxyl radicals. And the optimized core/sheath TiO 2 /SiO 2 nanofibers with a sheath thickness of 37 nm exhibited the best photocatalytic performance

  10. Zircaloy-sheathed element rods fitted with thermo-couples

    Bernardy de Sigoyer, B.; Jacques, F.; Thome, P.

    1963-01-01

    In order to carry out thermal conductivity measurements on UO 2 in conditions similar to those under which fuel rods are used, it was necessary to measure the temperature at the interior of a fuel element sheathed in zircaloy. The temperatures are taken with Thermocoax type thermocouples, that is to say fitted with a very thin sheath of stainless steel or Inconel. It is known also that fusion welding of zircaloy onto stainless steel is impossible and that high temperature welded joints are very difficult because of their aggressiveness. The technique used consists in brazing the thermocouples to relatively large stainless steel parts and then joining these plugs by electron bombardment welding to diffused stainless steel-zircaloy couplings. The properties of these diffused couplings and of the brazed joints were studied; the various stages in the fabrication of the containers are also described. (authors) [fr

  11. Moisture Durability with Vapor-Permeable Insulating Sheathing

    Lepage, R. [Building Science Corporation, Somerville, MA (United States); Lstiburek, J. [Building Science Corporation, Somerville, MA (United States)

    2013-09-01

    Exterior sheathing insulation is an effective strategy in increasing the overall R-value of wall assemblies; other benefits include decreasing the effects of thermal bridging and increasing the moisture durability of the built assembly. Vapor-permeable exterior insulation, such as mineral board or expanded polystyrene foam, are one such product that may be used to achieve these benefits. However, uncertainty exists on the effects of inward driven moisture and the interaction of increased sheathing temperatures on the moisture durability of the edifice. To address these concerns, Building Science Corporation (BSC) conducted a series of hygrothermal models for cities representing a range of different climate zones. This report describes the research project, key research questions, and the procedures utilized to analyse the problems.

  12. Moisture Durability with Vapor-Permeable Insulating Sheathing

    Lepage, R. [Building Science Corporation, Somerville, MA (United States); Lstiburek, J. [Building Science Corporation, Somerville, MA (United States)

    2013-09-01

    Exterior sheathing insulation is an effective strategy in increasing the overall R-value of wall assemblies; other benefits include decreasing the effects of thermal bridging and increasing the moisture durability of the built assembly. Vapor-permeable exterior insulation, such as mineral board or expanded polystyrene foam, are one such product that may be used to achieve these benefits. However,uncertainty exists on the effects of inward driven moisture and the interaction of increased sheathing temperatures on the moisture durability of the edifice. To address these concerns, Building Science Corporation (BSC) conducted a series of hygrothermal models for cities representing a range of different climate zones. This report describes the research project, key research questions, and theprocedures utilized to analyse the problems.

  13. Sheath structure in negative ion sources for fusion (invited)

    McAdams, R.; King, D. B.; Surrey, E.; Holmes, A. J. T.

    2012-01-01

    In fusion negative ion sources, the negative ions are formed on the caesiated plasma grid predominantly by hydrogen atoms from the plasma. The space charge of the negative ions leaving the wall is not fully compensated by incoming positive ions and at high enough emission a virtual cathode is formed. This virtual cathode limits the flux of negative ions transported across the sheath to the plasma. A 1D collisionless model of the sheath is presented taking into account the virtual cathode. The model will be applied to examples of the ion source operation. Extension of the model to the bulk plasma shows good agreement with experimental data. A possible role for fast ions is discussed.

  14. Out-of-pile fatigue tests on Zircaloy CANDU sheaths

    Roth, Maria; Ciocanescu, Marin; Gheorghiu, Constantin; Pitigoi, Vasile; Ducu, Catalin; Malinovschi, Viorel

    2005-01-01

    The paper outlines the achievements in the nuclear research field of cooperation on Nuclear Fuel performed as part of the collaboration under the Memorandum of Understanding, settled between Atomic Energy of Canada Limited (AECL) and Institute for Nuclear Research (ICN), The sheath behavior was simulated using out-of-pile fatigue tests, in conditions identical with those met during the operation in power cycling of CANDU reactor, except for irradiation. A special test rig, designed and carried-out at ICN ensured the experimental requirements according to the Canadian testing procedure. The description of the experimental setup and monitoring of testing parameters were also done. The fatigue life time, expressed as number of cycles to rupture (N), was measured as a function of the total strain amplitude (e) induced in the Zircaloy-4 sheath samples. Strain-Life time fatigue dependence (e-N) under low cycle fatigue conditions was also verified using the Coffin-Manson correlation. (authors)

  15. Retroperitoneal Malignant Peripheral Nerve Sheath Tumour: A Rare Case Report.

    Deger, Ayse Nur; Bayar, Mehmet Akif; Caydere, Muzaffer; Deger, Hakki; Tayfur, Mahir

    2015-09-01

    Malignant nerve sheath tumours (MPNST) are rare neoplasias and retroperitoneal cases are fairly rare and clinically difficult to be detected, but they are very agressive neoplasias. MPNST are frequently seen in head, neck and upper extremities. In patients with NF1; MPNST, a poor-prognostic lesion, may result from a malignant degeneration of a former plexiform neurofibroma. It is necessary to be aware of a potential malignancy in patients diagnosed with plexiform neurofibroma. We present a 21-year-old female with a diagnosis of MPNST. The patient was admited to the hospital because of a tumour in the subcutaneous region on her left buttock. The surgeon's clinical diagnosis was lipoma. After the pathological examination of biopsy specimen, the lesion was identified as "plexiform neurofibroma" and then the patient was diagnosed with Neurofibromatosis Type 1 (NF1). Simultaneously, another mass on the retroperitoneal region was identified as malignant peripheral nerve sheath tumour (MPNST).

  16. Studies of RF sheaths and diagnostics on IShTAR

    Crombé, K., E-mail: Kristel.Crombe@UGent.be [Department of Applied Physics, Ghent University, Ghent (Belgium); LPP-ERM/KMS, Royal Military Academy, Brussels (Belgium); Devaux, S.; Faudot, E.; Heuraux, S.; Moritz, J. [YIJL, UMR7198 CNRS-Université de Lorraine, Nancy (France); D’Inca, R.; Faugel, H.; Fünfgelder, H.; Jacquot, J.; Ochoukov, R. [Max-Planck-Institut für Plasmaphysik, Garching (Germany); Louche, F.; Tripsky, M.; Van Eester, D.; Wauters, T. [LPP-ERM/KMS, Royal Military Academy, Brussels (Belgium); Noterdaeme, J.-M. [Department of Applied Physics, Ghent University, Ghent (Belgium); Max-Planck-Institut für Plasmaphysik, Garching (Germany)

    2015-12-10

    IShTAR (Ion cyclotron Sheath Test ARrangement) is a linear magnetised plasma test facility for RF sheaths studies at the Max-Planck-Institut für Plasmaphysik in Garching. In contrast to a tokamak, a test stand provides more liberty to impose the parameters and gives better access for the instrumentation and antennas. The project will support the development of diagnostic methods for characterising RF sheaths and validate and improve theoretical predictions. The cylindrical vacuum vessel has a diameter of 1 m and is 1.1 m long. The plasma is created by an external cylindrical plasma source equipped with a helical antenna that has been designed to excite the m=1 helicon mode. In inductive mode, plasma densities and electron temperatures have been characterised with a planar Langmuir probe as a function of gas pressure and input RF power. A 2D array of RF compensated Langmuir probes and a spectrometer are planned. A single strap RF antenna has been designed; the plasma-facing surface is aligned to the cylindrical plasma to ease the modelling. The probes will allow direct measurements of plasma density profiles in front of the RF antenna, and thus a detailed study of the density modifications induced by RF sheaths, which influences the coupling. The RF antenna frequency has been chosen to study different plasma wave interactions: the accessible plasma density range includes an evanescent and propagative behaviour of slow or fast waves, and allows the study of the effect of the lower hybrid resonance layer.

  17. Photovoltaic sheathing element with one or more tabs

    Keenihan, James R; Langmaid, Joseph A; Lopez, Leonardo C.

    2017-02-07

    The present invention is premised upon an assembly that includes at least a photovoltaic sheathing element capable of being affixed on a building structure. The shingle including at least a photovoltaic cell assembly, a body portion attached to one or more portions of the photovoltaic cell assembly. Wherein the body portion includes one or more top peripheral tabs each capable of fitting under one or more vertically adjoining devices.

  18. Comparative Oncogenomics for Peripheral Nerve Sheath Cancer Gene Discovery

    2015-06-01

    and MPNSTs by determining whether these same genes are mutated in human tumors. 15. SUBJECT TERMS Nothing listed 16. SECURITY CLASSIFICATION OF: 17...sheath tumour (MPNST). In: Louis DNO, H.;Wiestler,O.D.;Cavenee,W.K., editor. WHO Classification of Tumours of the Central Nervous System. Lyon: IARC...Location Sex Major or Micro WHO Grade H6 DRG Male Major IV H9 Trigeminal ganglion Female Major III H17 Trigeminal ganglion Male Major II H19 Sciatic

  19. Comprehensive Study of Plasma-Wall Sheath Transport Phenomena

    2016-10-26

    the floating potential of wall material samples immersed in a low-temperature plasma were studied. Hysteresis is found to be due to secondary electron...continued research into plasma sheath physics. Hysteresis effects observed in the floating potential of wall material samples immersed in a low... Journal of Applied Physics, Volume 119, March 2016, pp. 113305 1-5. DISTRIBUTION A: Distribution approved for public release. 8 Figure 2

  20. A rare case of bilateral optic nerve sheath meningioma

    Somen Misra

    2014-01-01

    Full Text Available A 60-year-old female presented with gradual, painless, progressive diminution of vision, and progressive proptosis of left eye since 7 years. Ophthalmological examination revealed mild proptosis and total optic atrophy in the left eye. Magnetic resonance imaging (MRI and computed tomography (CT brain with orbit showed bilateral optic nerve sheath meningioma (ONSM involving the intracranial, intracanalicular, intraorbital part of the optic nerve extending up to optic chiasma and left cavernous sinus.

  1. Contribution to the physical study of sheath failure detections

    Mangin, Jean-Paul

    1968-11-01

    As the study of an installation aimed at the detection of sheath failure requires the knowledge of a great number of data related to all the fields of nuclear technology (fission mechanisms, sheath failure mechanisms, recoil of fission products, distribution of the heat transfer fluid in the reactor, techniques of measurement of beta and gamma neutrons, nuclear safety, and so on), this report aims at highlighting some specific issues, more particularly those related to sensors based on delayed neutrons. After having recalled the principles of sheath failure detection, the author presents the various aspects of the study of the formation of fission products and of their passage into the heat transfer fluid: detection by using delayed neutrons, detection by electrostatic collection, passage of fuel fission products into the coolant (recoil, corrosion, gaseous diffusion in the fuel), formation of fission products in the fuel (fission product efficiency). He reports the study of the transport of fission products by the coolant from their place of birth to the place of measurement. He presents the system of measurement by detection of delayed neutrons and by electrostatic collection, reports a sensitivity calculation, a background noise assessment, the determination of detection threshold, and the application of sensitivity and detection thresholds calculations [fr

  2. Unirradiated UO2 in irradiated zirconium alloy sheathing

    MacDonald, R.D.; Hardy, D.G.; Hunt, C.E.L.; Scoberg, J.A.

    1979-07-01

    Zircaloy-clad UO 2 fuel elements have defected in power reactors when element power outputs were raised significantly after a long irradiation at low power. We have irradiated fuel elements fabricated from fresh UO 2 pellets and zirconium alloy sheaths previously irradiated without fuel. This gave a fuel element with radiation-damaged low-ductility sheathing but with no fission products in the fuel. The elements were power boosted in-reactor to linear power outputs up to 84 kW/m for two five-day periods. No elements defected despite sheath strains of 0.82 percent at circumferential ridge postions. Half of these elements were subsequently soaked at low power to build up the fission product inventory in the fuel and then power boosted to 63 kW/m for a third time. Two elements defected on this final boost. We conclude that these defects were caused by fission product induced stress-corrosion cracking and that this mechanism plays an importent role in power reactor fuel defects. (auth)

  3. Measurements of the sheath potential in low density plasmas

    Bradley, J.W.; Khamis, R.A.; Sanduk, M.I.; Elliott, J.A.; Rusbridge, M.G.

    1992-01-01

    We have measured the sheath potential around a probe in a range of different plasma conditions in the UMIST, University of Manchester Institute of Science and Technology, quadrupole GOLUX and in a related experiment in which the plasma expands freely to supersonic velocity. In the latter case, the sheath potential agrees well with an appropriately modified form of the usual expression for a field-free plasma, for both hydrogen and argon plasmas. In GOLUX, however, the sheath potential is found to be significantly less than the accepted value, even when the magnetic field is taken into account. For the slow moving plasma in the outer part of the quadrupole confining field, we present both theoretical and experimental results showing that the reduction is due to truncation of the electron velocity distribution as the probe drains electrons from a closed flux tube faster than they can be replaced. In the central hot plasma, however, this explanation cannot apply. Here, the plasma is moving at about sonic speed and magnetic effects are weak. Nevertheless, the results are significantly different from both in the field free experiment. (author)

  4. AC losses of single-core MgB{sub 2} wires with different metallic sheaths

    Kováč, J., E-mail: elekjkov@savba.sk; Šouc, J.; Kováč, P.; Hušek, I.

    2015-12-15

    Highlights: • AC losses in single-core MgB{sub 2} wires with different metallic sheaths have been measured. • It has been shown that metallic sheath can affect the measured AC loss considerably. • GlidCop and Stainless Steel have negligible effect to the overall loss. • Strong contribution of eddy currents has been found in the wire with well conductive copper sheath. • Due to Monel sheath AC loss of MgB{sub 2} core is not visible. - Abstract: AC losses of single-core MgB{sub 2} superconductors with different metallic sheaths (Cu, GlidCop, stainless steel and Monel) have been measured and analyzed. These wires were exposed to external magnetic field with frequencies 72 and 144 Hz and amplitudes up to 0.1 T at temperatures ranged from 18 to 40 K. The obtained results have shown that applied metallic sheath can affect the measured AC loss considerably. In the case of GlidCop and Stainless Steel a negligible small effect of metallic sheath was observed. Strong contribution of eddy currents has been found in the wire with well conductive copper sheath. In the case of Monel sheath, the hysteresis loss of magnetic sheath is dominated and AC loss of MgB{sub 2} core is practically not visible.

  5. Studies on the transmission of sub-THz waves in magnetized inhomogeneous plasma sheath

    Yuan, Kai; Shen, Linfang; Yao, Ming; Deng, Xiaohua; Chen, Zhou; Hong, Lujun

    2018-01-01

    There have been many studies on the sub-terahertz (sub-THz) wave transmission in reentry plasma sheaths. However, only some of them have paid attention to the transmission of sub-THz waves in magnetized plasma sheaths. In this paper, the transmission of sub-THz waves in both unmagnetized and magnetized reentry plasma sheaths was investigated. The impacts of temporal evolution of the plasma sheath on the wave transmission were studied. The transmission of "atmospheric window" frequencies in a magnetized plasma sheath was discussed in detail. According to the study, the power transmission rates (Tp) for the left hand circular (LHC) and the right hand circular modes in the magnetized plasma sheath are obviously higher and lower than those in the unmagnetized plasma sheath, respectively. The Tp of LHC mode increases with both wave frequency and external magnetic field strength. Also, the Tp of LHC mode in both magnetized and unmagnetized plasma sheaths varies with time due to the temporal evolution of the plasma sheath. Moreover, the performance of sub-THz waves in magnetized plasma sheath hints at a new approach to the "blackout" problem. The new approach, which is in the capability of modern technology, is to utilize the communication system operating at 140 GHz with an onboard magnet installed near the antenna.

  6. Development of a Selective Medium for the Fungal Pathogen Fusarium graminearum Using Toxoflavin Produced by the Bacterial Pathogen Burkholderia glumae

    Boknam Jung

    2013-12-01

    Full Text Available The ascomycete fungus Fusarium graminearum is a major causal agent for Fusarium head blight in cereals and produces mycotoxins such as trichothecenes and zearalenone. Isolation of the fungal strains from air or cereals can be hampered by various other airborne fungal pathogens and saprophytic fungi. In this study, we developed a selective medium specific to F. graminearum using toxoflavin produced by the bacterial pathogen Burkholderia glumae. F. graminearum was resistant to toxoflavin, while other fungi were sensitive to this toxin. Supplementing toxoflavin into medium enhanced the isolation of F. graminearum from rice grains by suppressing the growth of saprophytic fungal species. In addition, a medium with or without toxoflavin exposed to wheat fields for 1 h had 84% or 25%, respectively, of colonies identified as F. graminearum. This selection medium provides an efficient tool for isolating F. graminearum, and can be adopted by research groups working on genetics and disease forecasting.

  7. Criteria for efficient prevention of dissemination and successful eradication of Erwinia amylovora (the cause of fire blight in Aragón, Spain

    Ana PALACIO-BIELSA

    2013-01-01

    Full Text Available Erwinia amylovora was detected on pome fruits in the Aragón region (North-Eastern Spain, in a ca. 5 km radius area located in the mid Jalón river (mid Ebro Valley in the province of Zaragoza, during 2000‒2003. Eight years have now passed since this pathogen was last detected, without new infections being reported in the same area. The bases for surveys and rapid eradication performed have been analyzed in detail to understand the reasons for the success in removing fireblight. The results demonstrate that intensive surveillance, risk assessment, plant analyses using accurate identification methods, and, especially, rapid total or selective eradication of infected trees in the plots have been very effective in preventing the generalized spread of fireblight and in delaying economic losses associated with this disease. Eradication and compensation to growers, estimated to cost approx. € 467,000, were clearly counterbalanced by the economic value of apple and pear production in the 2000‒2003 period (approx. € 368 million. Fire blight risk-assessment, using the MARYBLYT system, showed that climatic conditions in the studied area were favourable to infections during the analyzed period (1997‒2006. Molecular characterization of E. amylovora strains had revealed their homogeneity, suggesting that these fire blight episodes could have been caused by just one inoculum source, supporting the hypothesis that there was a unique introduction of E. amylovora in the studied area. Spatial spread of E. amylovora to trees was analyzed within six orchards, indicating an aggregated distribution model. This Spanish experience demonstrates the success of scientifically-based prevention methods that lead to the deployment of a fast and strict containment strategy, useful for other Mediterranean areas.

  8. Early activation of wheat polyamine biosynthesis during Fusarium head blight implicates putrescine as an inducer of trichothecene mycotoxin production

    Rusu Anca

    2010-12-01

    Full Text Available Abstract Background The fungal pathogen Fusarium graminearum causes Fusarium Head Blight (FHB disease on wheat which can lead to trichothecene mycotoxin (e.g. deoxynivalenol, DON contamination of grain, harmful to mammalian health. DON is produced at low levels under standard culture conditions when compared to plant infection but specific polyamines (e.g. putrescine and agmatine and amino acids (e.g. arginine and ornithine are potent inducers of DON by F. graminearum in axenic culture. Currently, host factors that promote mycotoxin synthesis during FHB are unknown, but plant derived polyamines could contribute to DON induction in infected heads. However, the temporal and spatial accumulation of polyamines and amino acids in relation to that of DON has not been studied. Results Following inoculation of susceptible wheat heads by F. graminearum, DON accumulation was detected at two days after inoculation. The accumulation of putrescine was detected as early as one day following inoculation while arginine and cadaverine were also produced at three and four days post-inoculation. Transcripts of ornithine decarboxylase (ODC and arginine decarboxylase (ADC, two key biosynthetic enzymes for putrescine biosynthesis, were also strongly induced in heads at two days after inoculation. These results indicated that elicitation of the polyamine biosynthetic pathway is an early response to FHB. Transcripts for genes encoding enzymes acting upstream in the polyamine biosynthetic pathway as well as those of ODC and ADC, and putrescine levels were also induced in the rachis, a flower organ supporting DON production and an important route for pathogen colonisation during FHB. A survey of 24 wheat genotypes with varying responses to FHB showed putrescine induction is a general response to inoculation and no correlation was observed between the accumulation of putrescine and infection or DON accumulation. Conclusions The activation of the polyamine biosynthetic

  9. Antimicrobial activities of the essential oils of various plants against tomato late blight disease agent Phytophthora infestans.

    Soylu, E Mine; Soylu, Soner; Kurt, Sener

    2006-02-01

    The aim of this study was to find an alternative to synthetic fungicides currently used in the control of devastating oomycete pathogen Phytophthora infestans, causal agent of late blight disease of tomato. Antifungal activities of essential oils obtained from aerial parts of aromatic plants such as oregano (Origanum syriacum var. bevanii), thyme (Thymbra spicata subsp. spicata), lavender (Lavandula stoechas subsp. stoechas), rosemary (Rosmarinus officinalis), fennel (Foeniculum vulgare), and laurel (Laurus nobilis), were investigated against P. infestans. Both contact and volatile phase effects of different concentrations of the essential oils used were determined by using two in vitro methods. Chemical compositions of the essential oils were also determined by GC-MS analysis. Major compounds found in essential oils of thyme, oregano, rosemary, lavender, fennel and laurel were carvacrol (37.9%), carvacrol (79.8), borneol (20.4%), camphor (20.2%), anethole (82.8%) and 1,8-cineole (35.5%), respectively. All essential oils were found to inhibit the growth of P. infestans in a dose-dependent manner. Volatile phase effect of oregano and thyme oils at 0.3 microg/ml air was found to completely inhibit the growth of P. infestans. Complete growth inhibition of pathogen by essential oil of fennel, rosemary, lavender and laurel was, however, observed at 0.4-2.0 microg/ml air concentrations. For the determination of the contact phase effects of the tested essential oils, oregano, thyme and fennel oils at 6.4 microg/ml were found to inhibit the growth of P. infestans completely. Essential oils of rosemary, lavender and laurel were inhibitory at relatively higher concentrations (12.8, 25.6, 51.2 microg/ml respectively). Volatile phase effects of essential oils were consistently found to be more effective on fungal growth than contact phase effect. Sporangial production was also inhibited by the essential oil tested. Light and scanning electron microscopic (SEM) observation on

  10. Osteocalcin expressing cells from tendon sheaths in mice contribute to tendon repair by activating Hedgehog signaling

    Wang, Yi; Zhang, Xu; Huang, Huihui; Xia, Yin; Yao, YiFei; Mak, Arthur Fuk-Tat; Yung, Patrick Shu-Hang; Chan, Kai-Ming; Wang, Li; Zhang, Chenglin; Huang, Yu; Mak, Kingston King-Lun

    2017-01-01

    Both extrinsic and intrinsic tissues contribute to tendon repair, but the origin and molecular functions of extrinsic tissues in tendon repair are not fully understood. Here we show that tendon sheath cells harbor stem/progenitor cell properties and contribute to tendon repair by activating Hedgehog signaling. We found that Osteocalcin (Bglap) can be used as an adult tendon-sheath-specific marker in mice. Lineage tracing experiments show that Bglap-expressing cells in adult sheath tissues pos...

  11. Design of Cold-Formed Steel Screw Connections with Gypsum Sheathing at Ambient and Elevated Temperatures

    Wei Chen

    2016-09-01

    Full Text Available Load-bearing cold-formed steel (CFS walls sheathed with double layers of gypsum plasterboard on both sides have demonstrated good fire resistance and attracted increasing interest for use in mid-rise CFS structures. As the main connection method, screw connections between CFS and gypsum sheathing play an important role in both the structural design and fire resistance of this wall system. However, studies on the mechanical behavior of screw connections with double-layer gypsum sheathing are still limited. In this study, 200 monotonic tests of screw connections with single- or double-layer gypsum sheathing at both ambient and elevated temperatures were conducted. The failure of screw connections with double-layer gypsum sheathing in shear was different from that of single-layer gypsum sheathing connections at ambient temperature, and it could be described as the breaking of the loaded sheathing edge combined with significant screw tilting and the loaded sheathing edge flexing fracture. However, the screw tilting and flexing fracture of the loaded sheathing edge gradually disappear at elevated temperatures. In addition, the influence of the loaded edge distance, double-layer sheathing and elevated temperatures is discussed in detail with clear conclusions. A unified design formula for the shear strength of screw connections with gypsum sheathing is proposed for ambient and elevated temperatures with adequate accuracy. A simplified load–displacement model with the post-peak branch is developed to evaluate the load–displacement response of screw connections with gypsum sheathing at ambient and elevated temperatures.

  12. [The sugar cane blight of the 1860s: science applied to agriculture].

    Bediaga, Begonha

    2012-12-01

    The Imperial Instituto Fluminense de Cultura (Fluminense Imperial Institute of Agriculture) encouraged debate with a view to eradicating the blight that devastated sugar cane plantations in the State of Bahia. Rural landowners, government officials and men of science participated in the discussions. The article presents the context of the sciences applied to agriculture, especially agricultural chemistry and the repercussions of the 'discoveries' of Justus Liebig in Brazil. The debate at the Imperial Instituto about the sugar cane blight was analyzed, together with the ideas espoused there and the characters involved in the issue. The procedures and solutions presented are studied, as well as the formation of knowledge networks around the agricultural sciences, which was in the process of institutionalization at the time.

  13. Potential of Microbispora sp. V2 as biocontrol agent against Sclerotium rolfsii, the causative agent of southern blight of Zea mays L (Baby corn)--in vitro studies.

    Patil, N N; Waghmode, M S; Gaikwad, P S; Gajbhiye, M H; Gunjal, A B; Nawani, N N; Kapadnis, B P

    2014-11-01

    The study was undertaken with the aim of exploring novel and beneficial agro activities of rare actinomycetes like Microbispora sp. V2. The antagonistic activity of Microbispora sp. V2 was evaluated as a biocontrol agents against Sclerotium rolfsii, a soil-borne fungal plant pathogen. The methodology performed for evaluation of biocontrol agent was in vitro evaluation assay which comprised of three tests viz., cellophane overlay technique, seed germination test and Thiram (fungicide) tolerance of Microbispora sp. V2. The isolate was found to inhibit the fungal pathogen Sclerotium rolfsii to 91.43% in cellophane assay. In seed germination assay, Microbispora sp. V2 treated seeds resulted in 25.75% increased germination efficiency, as compared to seeds infected by Sclerotium rolfsii. The isolate Microbispora sp. V2 could tolerate 1000 microg mL(-1) of Thiram (fungicide). The in vitro assay studies proved that Microbispora sp. V2 can be used as antifungal antagonist and thus posses' great potential as biocontrol agent against southern blight caused by Sclerotium rolfsii in Zea mays L (Baby corn) which causes large economical losses.

  14. Analysis of DNA methylation related to rice adult plant resistance to bacterial blight based on methylation-sensitive AFLP (MSAP) analysis.

    Sha, A H; Lin, X H; Huang, J B; Zhang, D P

    2005-07-01

    DNA methylation is known to play an important role in the regulation of gene expression in eukaryotes. The rice cultivar Wase Aikoku 3 becomes resistant to the blight pathogen Xanthomonas oryzae pv. oryzae at the adult stage. Using methylation-sensitive amplified polymorphism (MSAP) analysis, we compared the patterns of cytosine methylation in seedlings and adult plants of the rice cultivar Wase Aikoku 3 that had been inoculated with the pathogen Xanthomonas oryzae pv. oryzae, subjected to mock inoculation or left untreated. In all, 2000 DNA fragments, each representing a recognition site cleaved by either or both of two isoschizomers, were amplified using 60 pairs of selective primers. A total of 380 sites were found to be methylated. Of these, 45 showed differential cytosine methylation among the seedlings and adult plants subjected to different treatments, and overall levels of methylation were higher in adult plants than in seedlings. All polymorphic fragments were sequenced, and six showed homology to genes that code for products of known function. Northern analysis of three fragments indicated that their expression varied with methylation pattern, with hypermethylation being correlated with repression of transcription, as expected. The results suggest that significant differences in cytosine methylation exist between seedlings and adult plants, and that hypermethylation or hypomethylation of specific genes may be involved in the development of adult plant resistance (APR) in rice plants.

  15. Properties of plasma sheath with ion temperature in magnetic fusion devices

    Liu Jinyuan; Wang Feng; Sun Jizhong

    2011-01-01

    The plasma sheath properties in a strong magnetic field are investigated in this work using a steady state two-fluid model. The motion of ions is affected heavily by the strong magnetic field in fusion devices; meanwhile, the effect of ion temperature cannot be neglected for the plasma in such devices. A criterion for the plasma sheath in a strong magnetic field, which differs from the well-known Bohm criterion for low temperature plasma sheath, is established theoretically with a fluid model. The fluid model is then solved numerically to obtain detailed sheath information under different ion temperatures, plasma densities, and magnetic field strengths.

  16. Electric sheath and presheath in a collisionless, finite ion temperature plasma

    Emmert, G.A.; Wieland, R.M.; Mense, A.T.; Davidson, J.N.

    1980-01-01

    The plasma-sheath equation for a collisionless plasma with arbitrary ion temperature in plane geometry is formulated. Outside the sheath, this equation is approximated by the plasma equation, for which an analytic solution for the electrostatic potential is obtained. In addition, the ion distribution function, the wall potential, and the ion energy and particle flux into the sheath are explicitly calculated. The plasma-sheath equation is also solved numerically with no approximation of the Debye length. The numerical results compare well with the analytical results when the Debye length is small

  17. The dust motion inside the magnetized sheath - The effect of drag forces

    Pandey, B. P.; Samarian, A.; Vladimirov, S. V.

    2010-01-01

    The isolated charged dust inside the magnetized plasma sheath moves under the influence of the electron and ion drag force and the sheath electrostatic field. The charge on the dust is a function of its radius as well as the value of the ambient sheath potential. It is shown that the charge on the dust determines its trajectory and dust performs the spiraling motion inside the sheath. The location of the turning spiral is determined by the number of negative charge on the dust, which in turn is a function of the dust radius. The back and forth spiraling motion finally causes the dust to move in a small, narrow region of the sheath. For a bigger dust particle, the dust moves closer to the sheath presheath boundary suggesting that the bigger grains, owing to the strong repulsion between the wall and dust, will be unable to travel inside the sheath. Only small, micron-sized grains can travel closer to the wall before repulsion pushes it back toward the plasma-sheath boundary. The temporal behavior of the spiraling dust motion appears like a damped harmonic oscillation, suggesting that the plasma drag force causes dissipation of the electrostatic energy. However, after initial damping, the grain keeps oscillating although with much smaller amplitude. The possible application of the present results to the ongoing sheath experiments is discussed.

  18. Slow Wave Propagation and Sheath Interaction for ICRF Waves in the Tokamak SOL

    Myra, J. R.; D'Ippolito, D. A.

    2009-01-01

    In previous work we studied the propagation of slow-wave resonance cones launched parasitically by a fast-wave antenna into a tenuous magnetized plasma. Here we extend the previous calculation to ''dense'' scrape-off-layer (SOL) plasmas where the usual slow wave is evanescent. Using the sheath boundary condition, it is shown that for sufficiently close limiters, the slow wave couples to a sheath plasma wave and is no longer evanescent, but radially propagating. A self-consistent calculation of the rf-sheath width yields the resulting sheath voltage in terms of the amplitude of the launched SW, plasma parameters and connection length.

  19. Role of CD44 in Malignant Peripheral Nerve Sheath Tumor Growth and Metastasis

    Sherman, Larry

    2003-01-01

    Malignant peripheral nerve sheath tumors (MPNST) are aggressive, difficult to treat tumors that occur in type I neurofibromatosis patients with an increased incidence compared to the general population...

  20. Role of CD44 in Malignant Peripheral Nerve Sheath Tumor Growth and Metastasis

    Sherman, Larry

    2001-01-01

    Malignant peripheral nerve sheath tumors (MPNST) are aggressive, difficult to treat tumors that occur in type I neurofibromatosis patients with an increased incidence compared to the general population...

  1. Community structure of filamentous, sheath-building sulfur bacteria, Thioploca spp, off the coast of Chile

    Schulz, HN; Jørgensen, BB; Fossing, HA

    1996-01-01

    of Concepcion was investigated,vith respect to biomass, species distribution, and three-dimensional orientation of the sheaths, Thioploca sheaths and filaments were found across the whole shelf area within the oxygen minimum zone, The maximum wet weight of sheaths, 800 g m(-2), was found at a depth of 90 m......The filamentous sulfur bacteria Thioploca spp, produce dense bacterial mats in the shelf area off the coast of Chile and Peru. The mat consists of common sheaths, shared by many filaments, that reach 5 to 10 cm dean into the sediment, The structure of the Thioploca communities off the Bay...

  2. Screening for resistance to Fusarium head blight in spring wheat cultivars

    Scholten, Dr. Olga E.; Steenhuis-Broers, Greet; Osman, Aart; Bremer, Esther

    2006-01-01

    Fusarium fungi cause Fusarium head blight in wheat. This disease is a problem that occurs both in organic and conventional farming systems. As Fusarium fungi produce mycotoxins in wheat kernels they are a threat to human and animal health. Breeding for disease resistance is the only way to prevent or reduce the occurrence of the disease. The aim of the current research project is to identify different mechanisms of resistance in cultivars and breeding lines to be used in further breeding pro...

  3. Sweetgum Blight as Related to Alluvial Soils of the Mississippi River Floodplain

    E. Richard Toole; W. M. Broadfoot

    1959-01-01

    A BLIGHT OF UNKNOWN origin and cause has been very common throughout much of the range of sweetgum (Liquidambar styraci flua L.) since 1950. It is characterized by a gradual dying of the tree, often from the top down. The first visible indication is a thinning of a portion of the crown, caused when some buds fail to open and others produce only dwarfed, yellowish...

  4. Resistant and susceptible responses in alfalfa (Medicago sativa to bacterial stem blight caused by Pseudomonas syringae pv. syringae.

    Lev G Nemchinov

    Full Text Available Bacterial stem blight caused by Pseudomonas syringae pv. syringae is a common disease of alfalfa (Medicago sativa L. Little is known about host-pathogen interactions and host defense mechanisms. Here, individual resistant and susceptible plants were selected from cultivars Maverick and ZG9830 and used for transcript profiling at 24 and 72 hours after inoculation (hai with the isolate PssALF3. Bioinformatic analysis revealed a number of differentially expressed genes (DEGs in resistant and susceptible genotypes. Although resistant plants from each cultivar produced a hypersensitive response, transcriptome analyses indicated that they respond differently at the molecular level. The number of DEGs was higher in resistant plants of ZG9830 at 24 hai than in Maverick, suggesting that ZG9830 plants had a more rapid effector triggered immune response. Unique up-regulated genes in resistant ZG9830 plants included genes encoding putative nematode resistance HSPRO2-like proteins, orthologs for the rice Xa21 and soybean Rpg1-b resistance genes, and TIR-containing R genes lacking both NBS and LRR domains. The suite of R genes up-regulated in resistant Maverick plants had an over-representation of R genes in the CC-NBS-LRR family including two genes for atypical CCR domains and a putative ortholog of the Arabidopsis RPM1 gene. Resistance in both cultivars appears to be mediated primarily by WRKY family transcription factors and expression of genes involved in protein phosphorylation, regulation of transcription, defense response including synthesis of isoflavonoids, and oxidation-reduction processes. These results will further the identification of mechanisms involved in resistance to facilitate selection of parent populations and development of commercial varieties.

  5. QTL and candidate genes associated with common bacterial blight resistance in the common bean cultivar Longyundou 5 from China

    Jifeng Zhu; Jing Wu; Lanfen Wang; Matthew W. Blair; Zhendong Zhu; Shumin Wang

    2016-01-01

    Common bacterial blight (CBB), caused by Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans (Xff), is a worldwide disease of common bean (Phaseolus vulgaris L.). Longyundou 5, a Chinese cultivar in the Mesoamerican gene pool of common bean, displays resistance to the Xff strain XSC3-1. To identify the genetic mechanisms behind this resistance, we crossed Long 5 with a susceptible genotype to develop a mapping population of F2 plants. Plant resistance to CBB was identified at 14 and 21 days after inoculation with Xff strain XSC3-1. A major QTL at 14 and 21 days after inoculation was mapped on chromosome Pv10 with LOD scores of 6.41 and 5.35, respectively. This locus was associated with SAP6, a previously-identified and much-used dominant marker, but in a 4.2 cM interval between new codominant markers BMp10s174 and BMp10s244. Ten candidate genes were found between markers BMp10s174 and BMp10s244 on chromosome Pv10 and could encode defense response proteins responding to CBB pathogens. Four pairs each of epistatic QTL for CBB resistance were detected at 14 and 21 days after inoculation. Phenotypic variation explained by the epistatic QTL ranged from 7.19%to 12.15%and 7.72%to 8.80%at 14 and 21 days after inoculation, respectively. These results confirmed the importance of epistasis in CBB resistance in common bean. The adjacent markers found may be more efficient for marker assisted selection in common bean breeding for CBB resistance owing to their closer linkage to the target QTL.

  6. QTL and candidate genes associated with common bacterial blight resistance in the common bean cultivar Longyundou 5 from China

    Jifeng; Zhu; Jing; Wu; Lanfen; Wang; Matthew; W.Blair; Zhendong; Zhu; Shumin; Wang

    2016-01-01

    Common bacterial blight(CBB), caused by Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans(Xff), is a worldwide disease of common bean(Phaseolus vulgaris L.).Longyundou 5, a Chinese cultivar in the Mesoamerican gene pool of common bean, displays resistance to the Xff strain XSC3-1. To identify the genetic mechanisms behind this resistance,we crossed Long 5 with a susceptible genotype to develop a mapping population of F2 plants.Plant resistance to CBB was identified at 14 and 21 days after inoculation with Xff strain XSC3-1.A major QTL at 14 and 21 days after inoculation was mapped on chromosome Pv10 with LOD scores of 6.41 and 5.35, respectively. This locus was associated with SAP6, a previouslyidentified and much-used dominant marker, but in a 4.2 cM interval between new codominant markers BMp10s174 and BMp10s244. Ten candidate genes were found between markers BMp10s174 and BMp10s244 on chromosome Pv10 and could encode defense response proteins responding to CBB pathogens. Four pairs each of epistatic QTL for CBB resistance were detected at 14 and 21 days after inoculation. Phenotypic variation explained by the epistatic QTL ranged from 7.19% to 12.15% and 7.72% to 8.80% at 14 and 21 days after inoculation, respectively. These results confirmed the importance of epistasis in CBB resistance in common bean. The adjacent markers found may be more efficient for marker assisted selection in common bean breeding for CBB resistance owing to their closer linkage to the target QTL.

  7. Miscellaneous conditions of tendons, tendon sheaths, and ligaments.

    Dyson, S J; Dik, K J

    1995-08-01

    The use of diagnostic ultrasonography has greatly enhances our ability to diagnose injuries of tendons and tendon sheaths that were previously either unrecognized or poorly understood. For may of these injuries, there is currently only a small amount of follow-up data. This article considers injuries of the deep digital flexor tendon and its accessory ligament, the carpal tunnel syndrome soft tissue swellings on the dorsal aspect of the carpus, intertubercular (bicipital) bursitis and bicipital tendinitis, injuries of the gastrocnemius tendon, common calcaneal tendinitis, rupture of peroneus (fibularis tertius) and ligaments injuries of the back.

  8. The new concept of ureteral access sheath with guidewire disengagement

    Breda, Alberto; Emiliani, Esteban; Millán, Felix

    2016-01-01

    PURPOSE: To prospectively evaluate the new Flexor©Parallel™ Rapid Release™ (Cook(®), Bloomington, IN, USA) access sheath (UAS) which allows the use of a single wire to serve as both safety and working guide. MATERIALS AND METHODS: Between June and September 2014, adult patients from five European...... by the surgeons on a scale from very bad to very good. RESULTS: In total, 134 UASs were used in 67 male and 67 female patients. Fifty percent of ureters (67 patients) were pre-stented. Ninety percent of the procedures were therapeutic. The overall successful insertion rate was 94 %. Pre-stenting status...

  9. Parametric investigations of target normal sheath acceleration experiments

    Zani, Alessandro; Sgattoni, Andrea; Passoni, Matteo

    2011-01-01

    One of the most important challenges related to laser-driven ion acceleration research is to actively control some important ion beam features. This is a peculiar topic in the light of future possible technological applications. In the present work we make use of one theoretical model for target normal sheath acceleration in order to reproduce recent experimental parametric studies about maximum ion energy dependencies on laser parameters. The key role played by pulse energy and intensity is enlightened. Finally the effective dependence of maximum ion energy on intensity is evaluated using a combined theoretical approach, obtained by means of an analytical and a particle-in-cell numerical investigation.

  10. Parametric investigations of target normal sheath acceleration experiments

    Zani, Alessandro; Sgattoni, Andrea; Passoni, Matteo

    2011-10-01

    One of the most important challenges related to laser-driven ion acceleration research is to actively control some important ion beam features. This is a peculiar topic in the light of future possible technological applications. In the present work we make use of one theoretical model for target normal sheath acceleration in order to reproduce recent experimental parametric studies about maximum ion energy dependencies on laser parameters. The key role played by pulse energy and intensity is enlightened. Finally the effective dependence of maximum ion energy on intensity is evaluated using a combined theoretical approach, obtained by means of an analytical and a particle-in-cell numerical investigation.

  11. Repairing a steam generator tube by inserting a sheath

    Gaudin, J.P.

    1986-01-01

    According to the invention, the mechanical deformation of the sheath, realized by expansion in its end part opposite to the expanded end within the tube plate, is situated along a limited height, and the parameters of the said mechanical deformation are calculated according to the welding parameters applied consecutively. Besides, the said welding parameters are determined according to the initial mechanical deformation to obtain stress relaxation more particularly in the singular zones of the mechanical deformation. The present invention applies to the repair of PWR steam generator tubes [fr

  12. Biological control of fusarium seedling blight disease of wheat and barley.

    Khan, Mojibur R; Fischer, Sven; Egan, Damian; Doohan, Fiona M

    2006-04-01

    ABSTRACT Fusarium fungi, including F. culmorum, cause seedling blight, foot rot, and head blight diseases of cereals, resulting in yield loss. In a screen for potential disease control organisms and agents, Pseudomonas fluorescens strains MKB 100 and MKB 249, P. frederiksbergensis strain 202, Pseudomonas sp. strain MKB 158, and chitosan all significantly reduced the extent of both wheat coleoptile growth retardation and wheat and barley seedling blight caused by F. culmorum (by 53 to 91%). Trichodiene synthase is a Fusarium enzyme necessary for trichothecene mycotoxin biosynthesis; expression of the gene encoding this enzyme in wheat was 33% lower in stem base tissue coinoculated with Pseudomonas sp. strain MKB 158 and F. culmorum than in wheat treated with bacterial culture medium and F. culmorum. When wheat and barley were grown in soil amended with either chitosan, P. fluorescens strain MKB 249, Pseudomonas sp. strain MKB 158, or culture filtrates of these bacteria, the level of disease symptoms on F. culmorum-inoculated stem base tissue (at 12 days post- F. culmorum inoculation) was >/=31% less than the level on F. culmorum-inoculated plants grown in culture medium-amended soil. It seems likely that at least part of the biocontrol activity of these bacteria and chitosan may be due to the induction of systemic disease resistance in host plants. Also, in coinoculation studies, Pseudomonas sp. strain MKB 158 induced the expression of a wheat class III plant peroxidase gene (a pathogenesis-related gene).

  13. Anthesis, the infectious process and disease progress curves for fusarium head blight in wheat

    Erlei Melo Reis

    2016-06-01

    Full Text Available ABSTRACT Fusarium head blight of wheat (Triticum aestivum, caused by the fungus Gibberella zeae, is a floral infecting disease that causes quantitative and qualitative losses to winter cereals. In Brazil, the sanitary situation of wheat has led to research in order to develop strategies for sustainable production, even under adverse weather conditions. To increase the knowledge of the relationship among the presence of anthesis, the infectious process, the disease progress and the saprophytic fungi present in wheat anthers, studies were conducted in the experimental field of University of Passo Fundo (UPF, using the cultivar Marfim, in the 2011 growing season. The disease incidence in spikes and spikelets was evaluated. The presence of exserted anthers increased the spike exposure time to the inoculum. The final incidence of fusarium head blight, in the field, was dependent on the presence of exserted anthers. The disease followed an aggregation pattern and its evolution increased with time, apparently showing growth according to secondary cycles. The fungi isolated from exserted anthers (Alternaria sp., Fusarium sp., Drechslera spp. and Epicoccum sp. did not compete for the infection site of fusarium head blight in wheat, not interfering with the incidence of F. graminearum.

  14. In vitro induction of variability through radiation for late blight resistance and heat tolerance in potato

    Gosal, S.S.; Das, A.; Gopal, J.; Minocha, J.L.; Chopra, H.R.; Dhaliwal, H.S.

    2001-01-01

    In vitro cultured shoots of potato, cvs. 'Kufri Jyoti' and 'Kufri Chandramukhi', were irradiated with 20 and 40 Gy gamma rays. Microtubers, obtained from MIV3 shoots multiplied in vitro, were planted in pots. The resulting plants were screened for resistance to late blight, using detached leaf method. In 'Kufri Chandramukhi', 42% plants and in 'Kufri Jyoti' 36% plants, obtained from 40 Gy treatment, showed resistance to late blight. The frequency of resistant plants was lower from 20 Gy treatment. The progenies of putatively resistant plants were grown in field, and inoculated with sporangial inoculum of late blight fungus. The field grown progeny segregated for disease resistance, and approximately 56% plants showed resistance. During the next propagation, the frequency of resistant plants increased to 72%. For developing heat tolerance, microtubers obtained from 20 and 40 Gy treatments and in vitro multiplied M 1 V 3 shoots were cultured at high temperature of 28C. In both varieties, the number of the microtubers per plant was highly reduced and the resulting microtubers had distorted shape but showed better germination (62%), even in early sowing at relatively higher temperature. Of the two radiation doses, the higher dose of 40 Gy gave better results in both the varieties. Heat tolerance was also assessed from chlorophyll persistence. The progenies from putative heat-tolerant plants were tested in field by planting at higher temperature in two subsequent generations. The heat tolerant plants segregated in each generation, but the frequency of heat-tolerant plants increased. (author)

  15. Fungi of the genus Fusarium as pathogens of soybean seedlings

    Joanna Marcinkowska

    2013-12-01

    Full Text Available Twenty isolates of fungi of the genus Fusarium collected in the period 1980-1982 from various organs of diseased soybean plants were investigated. Eight of them proved pathogenic to soybean seedlings. The species F. culmorum was most numerously represented among the isolated (4 of 8 pathogens. Isolates of F. sambucinum were also pathogenic (2 of 4 and those of F. soloni (1 of 3, too. The only isolate of F. avenaceum also caused seedling blight. Two isolates of F. oxysporum and two of F. arthrosporioides were not pathogenic. Numerous isolates affected seed gernination and one greatly inhibited growth of the infected seedlings. Pathogenicity was tested in the laboratory in Petri plates on isolate cultures and on filter paper imbibed with fungal inoculum and, in the greenhouse on a peat and perlite substrate. The degree of infection and the character of the disease symptoms depended on the experimental conditions. The results of experiments in plates and in the greenhouse supplemented one another.

  16. Foodborne pathogens

    Thomas Bintsis

    2017-06-01

    Full Text Available Foodborne pathogens are causing a great number of diseases with significant effects on human health and economy. The characteristics of the most common pathogenic bacteria (Bacillus cereus, Campylobacter jejuni, Clostridium botulinum, Clostridium perfringens, Cronobacter sakazakii, Esherichia coli, Listeria monocytogenes, Salmonella spp., Shigella spp., Staphylococccus aureus, Vibrio spp. and Yersinia enterocolitica, viruses (Hepatitis A and Noroviruses and parasites (Cyclospora cayetanensis, Toxoplasma gondii and Trichinella spiralis, together with some important outbreaks, are reviewed. Food safety management systems based on to classical hazard-based approach has been proved to be inefficient, and risk-based food safety approach is now suggested from leading researchers and organizations. In this context, a food safety management system should be designed in a way to estimate the risks to human health from food consumption and to identify, select and implement mitigation strategies in order to control and reduce these risks. In addition, the application of suitable food safety education programs for all involved people in the production and consumption of foods is suggested.

  17. Measure Guideline: Guidance on Taped Insulating Sheathing Drainage Planes

    Grin, A.; Lstiburek, J.

    2014-09-01

    This guide provides information and recommendations to the following groups: insulation contractors; general contractors; builders; home remodelers; mechanical contractors; and homeowners, as a guide to the work that needs to be done. The order of work completed during home construction and retrofit improvements is important. Health and safety issues must be addressed first and are more important than durability issues. And durability issues are more important than saving energy. Not all techniques can apply to all houses. Special conditions will require special action. Some builders or homeowners will wish to do more than the important but basic retrofit strategies outlined by this guide. The following are best practice and product recommendations from the interviewed contractors and homebuilders who collectively have a vast amount of experience. Three significant items were discussed with the group which are required to make taped insulating sheathing a simple, long term, and durable drainage plane: 1. Horizontal joints should be limited or eliminated wherever possible; 2. Where a horizontal joint exists use superior materials; 3. Frequent installation inspection and regular trade training are required to maintain proper installation. Section 5 of this measure guideline contains the detailed construction procedure for the three recommended methods to effectively seal the joints in exterior insulating sheathing to create a simple, long term, and durable drainage plane.

  18. Root treatment with rhizobacteria antagonistic to Phytophthora blight affects anthracnose occurrence, ripening, and yield of pepper fruit in the plastic house and field.

    Sang, Mee Kyung; Kim, Jeong Do; Kim, Beom Seok; Kim, Ki Deok

    2011-06-01

    We previously selected rhizobacterial strains CCR04, CCR80, GSE09, ISE13, and ISE14, which were antagonistic to Phytophthora blight of pepper. In this study, we investigated the effects of root treatment of rhizobacteria on anthracnose occurrence, ripening, and yield of pepper fruit in the plastic house and field in 2008 and 2009. We also examined the effects of volatiles produced by the strains on fruit ripening and on mycelial growth and spore development of Colletotrichum acutatum and Phytophthora capsici in the laboratory, identifying the volatile compounds by gas chromatography-mass spectrometry (GC-MS). In the house tests, all strains significantly (P anthracnose incidence on pepper fruit; strains GSE09 and ISE14 consistently produced higher numbers of pepper fruit or increased the fresh weight of red fruit more than the controls in both years. In the field tests, all strains significantly (P anthracnose occurrence on either green or red pepper fruit; strain ISE14 consistently produced higher numbers or increased fresh weights of red fruit more than the controls in both years. In the laboratory tests, volatiles produced by strains GSE09 and ISE13 only stimulated maturation of pepper fruit from green (unripe) to red (ripe) fruit; the volatiles of certain strains inhibited the growth and development of C. acutatum and P. capsici. On the other hand, GC-MS analysis of volatiles of strains GSE09 and ISE13 revealed 17 distinct compounds in both strains, including decane, dodecane, 1,3-di-tert-butylbenzene, tetradecane, 2,4-di-tert-butylphenol, and hexadecane. Among these compounds, 2,4-di-tert-butylphenol only stimulated fruit ripening and inhibited growth and development of the pathogens. Taken together, strains GSE09 and ISE14 effectively reduced anthracnose occurrence and stimulated pepper fruit ripening and yield, possibly via bacterial volatiles. Therefore, these two strains could be potential agents for controlling Phytophthora blight and anthracnose, and for

  19. Dusty Plasma Modeling of the Fusion Reactor Sheath Including Collisional-Radiative Effects

    Dezairi, Aouatif; Samir, Mhamed; Eddahby, Mohamed; Saifaoui, Dennoun; Katsonis, Konstantinos; Berenguer, Chloe

    2008-01-01

    The structure and the behavior of the sheath in Tokamak collisional plasmas has been studied. The sheath is modeled taking into account the presence of the dust 2 and the effects of the charged particle collisions and radiative processes. The latter may allow for optical diagnostics of the plasma.

  20. Effect of two-temperature electrons distribution on an electrostatic plasma sheath

    Ou, Jing; Xiang, Nong; Gan, Chunyun; Yang, Jinhong

    2013-01-01

    A magnetized collisionless plasma sheath containing two-temperature electrons is studied using a one-dimensional model in which the low-temperature electrons are described by Maxwellian distribution (MD) and high-temperature electrons are described by truncated Maxwellian distribution (TMD). Based on the ion wave approach, a modified sheath criterion including effect of TMD caused by high-temperature electrons energy above the sheath potential energy is established theoretically. The model is also used to investigate numerically the sheath structure and energy flux to the wall for plasmas parameters of an open divertor tokamak-like. Our results show that the profiles of the sheath potential, two-temperature electrons and ions densities, high-temperature electrons and ions velocities as well as the energy flux to the wall depend on the high-temperature electrons concentration, temperature, and velocity distribution function associated with sheath potential. In addition, the results obtained in the high-temperature electrons with TMD as well as with MD sheaths are compared for the different sheath potential

  1. An analytical investigation: Effect of solar wind on lunar photoelectron sheath

    Mishra, S. K.; Misra, Shikha

    2018-02-01

    The formation of a photoelectron sheath over the lunar surface and subsequent dust levitation, under the influence of solar wind plasma and continuous solar radiation, has been analytically investigated. The photoelectron sheath characteristics have been evaluated using the Poisson equation configured with population density contributions from half Fermi-Dirac distribution of the photoemitted electrons and simplified Maxwellian statistics of solar wind plasma; as a consequence, altitude profiles for electric potential, electric field, and population density within the photoelectron sheath have been derived. The expression for the accretion rate of sheath electrons over the levitated spherical particles using anisotropic photoelectron flux has been derived, which has been further utilized to characterize the charging of levitating fine particles in the lunar sheath along with other constituent photoemission and solar wind fluxes. This estimate of particle charge has been further manifested with lunar sheath characteristics to evaluate the altitude profile of the particle size exhibiting levitation. The inclusion of solar wind flux into analysis is noticed to reduce the sheath span and altitude of the particle levitation; the dependence of the sheath structure and particle levitation on the solar wind plasma parameters has been discussed and graphically presented.

  2. On the biogenesis of the myelin sheath : Cognate polarized trafficking pathways in oligodendrocytes

    de Vries, H; Hoekstra, D

    2000-01-01

    Oligodendrocytes, the myelinating cells of the central nervous system, are capable of transporting vast quantities of proteins and of lipids, In particular galactosphingolipids, to the myelin sheath. The sheath is continuous with the plasma membrane of the oligodendrocyte, but the composition of

  3. Measurement of sheath thickness by lining out grooves in the Hall-type stationary plasma thrusters

    Yu Daren; Wu Zhiwen; Ning Zhongxi; Wang Xiaogang

    2007-01-01

    Using grooves created along the axial direction of the discharge channel, a method for measuring sheath thickness in Hall-type stationary plasma thrusters has been developed. By distorting the wall surface using these grooves, it is possible to numerically study the effect of the wall surface on the sheath and near wall conductivity. Monte Carlo method is applied to calculate the electron temperature variation with different groove depths. The electron dynamic process in the plasma is described by a test particle method with the electron randomly entering the sheath from the discharge channel and being reflected back. Numerical results show that the reflected electron temperature is hardly affected by the wall surface if the groove depth is much less than the sheath thickness. On the other hand, the reflected electron temperature increases if the groove depth is much greater than the sheath thickness. The reflected electron temperature has a sharp jump when the depth of groove is on the order of the sheath thickness. The simulation is repeated with different sheath thicknesses and the results are the same. Therefore, a diagnosis mean of the sheath thickness can be developed based on the method. Also the simulation results are in accord with the experimental data. Besides, the measurement method may be applicable to other plasma device with similar orthogonal steady state electrical and magnetic fields

  4. Assessment of the Socio-Economic Impact of Late Blight and State-of-the-Art Management in European Organic Potato Production Systems

    Tamm, L.; Smit, A.B.; Hospers, M.; Janssens, S.R.M.; Buurma, J.S.; Molgaard, J.P.; Laerke, P.E.; Hansen, H.H.; Hermans, A.; Bodker, L.; Bertrand, C.; Lambion, J.; Finckh, M.R.; Schuler, C.; Lammerts Van Bueren, E.; Ruissen, T.; Nielsen, B.J.; Solberg, S.; Speiser, B.; Wolfe, M.S.; Philips, S.; Wilcoxon, S.J.; Leifert, C.

    2004-01-01

    In Europe, late blight, caused by Phytophthora infestans, is the most devastating disease affecting organic (and conventional) potato production. Under suitable environmental conditions the disease can spread rapidly and it can cause complete crop loss. The extent of damage due to late blight

  5. Fibroma of the tendon sheath of the long head of the biceps tendon

    Maeseneer, Michel de; Shahabpour, Maryam; Isacker, Tom van; Lenchik, Leon; Caillie, Marie-Astrid van

    2014-01-01

    Fibroma of the tendon sheath is a benign tumor that is less common than giant cell tumor of the tendon sheath. Both tumors may present as a painless, slowly enlarging mass. Radiological findings may be similar for both tumors. Histologically, fibroma of the tendon sheath lacks the hemosiderin-laden macrophages that are typical for giant cell tumor of the tendon sheath. We report on a 49-year-old woman with fibroma of the tendon sheath of the long head of the biceps tendon. In our case, on MR images, we observed band-like hypointense areas centrally in the tumor, mild patchy contrast enhancement, and most importantly, no decrease of signal intensity on gradient echo images. These characteristics reflected histological findings. (orig.)

  6. Sheath formation of a plasma containing multiply charged ions, cold and hot electrons, and emitted electrons

    You, H.J.

    2012-01-01

    It is quite well known that ion confinement is an important factor in an electron cyclotron resonance ion source (ECRIS) as it is closely related to the plasma potential. A model of sheath formation was extended to a plasma containing multiply charged ions (MCIs), cold and hot electrons, and secondary electrons emitted either by MCIs or hot electrons. In the model, a modification of the 'Bohm criterion' was given, the sheath potential drop and the critical emission condition were also analyzed. It appears that the presence of hot electrons and emitted electrons strongly affects the sheath formation so that smaller hot electrons and larger emission current result in reduced sheath potential (or floating potential). However the sheath potential was found to become independent of the emission current J when J > J c , (where J c is the critical emission current. The paper is followed by the associated poster

  7. The anatomy of the first sacral nerve root sheath shown by computed tomography.

    Moore, N R; Dixon, A K; Freer, C E

    1989-08-01

    Analysis of 25 patients with normal computed tomographic appearances at the lumbosacral junction revealed wide variation in the anatomical level at which the first sacral nerve root sheaths were seen emerging from the theca. In nine patients (36%), the S1 nerve root sheaths were first recognized at the level of the lumbosacral disc. In 14 patients (56%), the sheaths emerged cranial to the disc; it is possible that these patients may be more prone to neurological complications related to disc or facet joint disease, especially if the sheath is laterally sited within the lateral recess. Conversely, that minority of patients (two, 8%) in whom the root sheaths emerge caudal to the disc level may be relatively protected from neurological complications.

  8. Slow-wave propagation and sheath interaction in the ion-cyclotron frequency range

    Myra, J R; D'Ippolito, D A

    2010-01-01

    In previous work (Myra J R and D'Ippolito D A 2008 Phys. Rev. Lett. 101 195004) we studied the propagation of slow-wave (SW) resonance cones launched parasitically by a fast-wave antenna into a tenuous magnetized plasma. Here we extend the treatment of SW propagation and sheath interaction to 'dense' scrape-off-layer plasmas where the usual cold-plasma SW is evanescent. Using the sheath boundary condition, it is shown that for sufficiently close limiters, the SW couples to a sheath-plasma wave and is no longer evanescent, but radially propagating. A self-consistent calculation of the rf-sheath width yields the resulting sheath voltage in terms of the amplitude of the launched SW, plasma parameters and connection length. The conditions for avoiding potentially deleterious rf-wall interactions in tokamak rf heating experiments are summarized.

  9. Comparative and bioinformatics analyses of pathogenic bacterial secretomes identified by mass spectrometry in Burkholderia species.

    Nguyen, Thao Thi; Chon, Tae-Soo; Kim, Jaehan; Seo, Young-Su; Heo, Muyoung

    2017-07-01

    Secreted proteins (secretomes) play crucial roles during bacterial pathogenesis in both plant and human hosts. The identification and characterization of secretomes in the two plant pathogens Burkholderia glumae BGR1 and B. gladioli BSR3, which cause diseases in rice such as seedling blight, panicle blight, and grain rot, are important steps to not only understand the disease-causing mechanisms but also find remedies for the diseases. Here, we identified two datasets of secretomes in B. glumae BGR1 and B. gladioli BSR3, which consist of 118 and 111 proteins, respectively, using mass spectrometry approach and literature curation. Next, we characterized the functional properties, potential secretion pathways and sequence information properties of secretomes of two plant pathogens in a comparative analysis by various computational approaches. The ratio of potential non-classically secreted proteins (NCSPs) to classically secreted proteins (CSPs) in B. glumae BGR1 was greater than that in B. gladioli BSR3. For CSPs, the putative hydrophobic regions (PHRs) which are essential for secretion process of CSPs were screened in detail at their N-terminal sequences using hidden Markov model (HMM)-based method. Total 31 pairs of homologous proteins in two bacterial secretomes were indicated based on the global alignment (identity ≥ 70%). Our results may facilitate the understanding of the species-specific features of secretomes in two plant pathogenic Burkholderia species.

  10. Levitation and dynamics of a collection of dust particles in a fully ionized plasma sheath

    Nitter, T.; Aslaksen, T.K.; Melandsoe, F.; Havnes, O.

    1994-01-01

    The authors have examined the dynamics of a collection of charged dust particles in the plasma sheath above a large body in a fully ionized space plasma when the radius of the large body is much larger than the sheath thickness. The dust particles are charged by the plasma, and the forces on the dust particles are assumed to be from the electric field in the sheath and from gravitation only. These forces will often act in opposite direction and may balance, making dust suspension and collection possible. The dust particles are supplied by injection or by electrostatic levitation. The ability of the sheath to collect dust particles, will be optimal for a certain combination of gravitation and plasma and dust particle parameters. In a dense dust sheath, the charges on the dust particles contribute significantly to the total space charge, and collective effects become important. These effects will reduce the magnitude of the sheath electric field strength and the charge on the dust particles. As dust particles are collected, the dust sheath is stretched and the largest dust particles may drop out, because the sheath is no longer able to suspend them. In a tenuous dust sheath, the inner layer, from the surface and about one Debye length thick, will be unstable for dust particle motion, and dust will not collect there. In a dense dust sheath, collective effects will decrease the thickness of this inner dust-free layer, making dust collection closer to the surface possible. By linearization of the force and current equations, they find the necessary and sufficient conditions which resemble those of planetary system bodies, but the results may also be of relevance to some laboratory plasmas

  11. Benign and malignant neurogenic tumors of nerve sheath origin on FDG PET

    Yun, M. J.; Go, D. H.; Yoo, Y. H.; Shin, K. H.; Lee, J. D

    2004-01-01

    The differentiation between benign and malignant nerve sheath tumors is difficult based on conventional radiological imaging. This study was undertaken to investigate the value of FDG PET in distinguishing benign from malignant neurogenic tumors of nerve sheath origin. We performed a retrospective review of the medical record to select patients with nerve sheath tumors who had underdone FDG PET imaging. Fifteen patients (7F: 8M) with benign or malignant nerve sheath tumors were included in this study. Of the 15 patients, 9 were diagnosed with the known neurofibromatosis type I. A total of 19 nerve sheath tumors were included from the 15 patients. All patients had undergone FDG PET to evaluate for malignant potential of the known lesions. Images of FDG PET were semi-quantitatively analyzed and a region of interest (ROI) was placed over the area of the maximum FDG uptake and an average standardized uptake value was taken for final analysis. There were 5 malignant peripheral nerve sheath tumors, 5 schwannomas, and 9 neurofibromas. The mean SUV was 2 (ranged from 1.6 to 3.3) for schwannomas, 1.3 (0.7 to 2.5) for neurofibromas, and 8.4 (4.6 to 12.2) for malignant peripheral nerve sheath tumors. Of 14 benign tumors, all except one schwannoma showed a SUV less than 3. When a cutoff SUV of 4 was used to differentiate the nerve sheath tumors, all tumors were correctly classified as benign or malignant, respectively. Among the 9 patients diagnosed with neurofibromatosis type I. 4 had malignant peripheral nerve sheath tumors and FDG PET accurately detected all the 4 lesions with malignant transformation. According to our results, FDG PET seems to have a great potential for accurately characterizing benign versus malignant nerve sheath tumors. It appears to be extremely useful for patients with neurofibromatosis to localize the lesion with malignant transformation

  12. Transcriptome dynamics of a susceptible wheat upon Fusarium head blight reveals that molecular responses to Fusarium graminearum infection fit over the grain development processes.

    Chetouhi, Cherif; Bonhomme, Ludovic; Lasserre-Zuber, Pauline; Cambon, Florence; Pelletier, Sandra; Renou, Jean-Pierre; Langin, Thierry

    2016-03-01

    In many plant/pathogen interactions, host susceptibility factors are key determinants of disease development promoting pathogen growth and spreading in plant tissues. In the Fusarium head blight (FHB) disease, the molecular basis of wheat susceptibility is still poorly understood while it could provide new insights into the understanding of the wheat/Fusarium graminearum (Fg) interaction and guide future breeding programs to produce cultivars with sustainable resistance. To identify the wheat grain candidate genes, a genome-wide gene expression profiling was performed in the French susceptible wheat cultivar, Recital. Gene-specific two-way ANOVA of about 40 K transcripts at five grain developmental stages identified 1309 differentially expressed genes. Out of these, 536 were impacted by the Fg effect alone. Most of these Fg-responsive genes belonged to biological and molecular functions related to biotic and abiotic stresses indicating the activation of common stress pathways during susceptibility response of wheat grain to FHB. This analysis revealed also 773 other genes displaying either specific Fg-responsive profiles along with grain development stages or synergistic adjustments with the grain development effect. These genes were involved in various molecular pathways including primary metabolism, cell death, and gene expression reprogramming. An increasingly complex host response was revealed, as was the impact of both Fg infection and grain ontogeny on the transcription of wheat genes. This analysis provides a wealth of candidate genes and pathways involved in susceptibility responses to FHB and depicts new clues to the understanding of the susceptibility determinism in plant/pathogen interactions.

  13. Computational analyses of ancient pathogen DNA from herbarium samples: challenges and prospects.

    Yoshida, Kentaro; Sasaki, Eriko; Kamoun, Sophien

    2015-01-01

    The application of DNA sequencing technology to the study of ancient DNA has enabled the reconstruction of past epidemics from genomes of historically important plant-associated microbes. Recently, the genome sequences of the potato late blight pathogen Phytophthora infestans were analyzed from 19th century herbarium specimens. These herbarium samples originated from infected potatoes collected during and after the Irish potato famine. Herbaria have therefore great potential to help elucidate past epidemics of crops, date the emergence of pathogens, and inform about past pathogen population dynamics. DNA preservation in herbarium samples was unexpectedly good, raising the possibility of a whole new research area in plant and microbial genomics. However, the recovered DNA can be extremely fragmented resulting in specific challenges in reconstructing genome sequences. Here we review some of the challenges in computational analyses of ancient DNA from herbarium samples. We also applied the recently developed linkage method to haplotype reconstruction of diploid or polyploid genomes from fragmented ancient DNA.

  14. Effect of Temperature on Growth and Sporulation of US-22, US-23, and US-24 Clonal Lineages of Phytophthora infestans and Implications for Late Blight Epidemiology.

    Seidl Johnson, Anna C; Frost, Kenneth E; Rouse, Douglas I; Gevens, Amanda J

    2015-04-01

    Epidemics of late blight, caused by Phytophthora infestans (Mont.) de Bary, have been studied by plant pathologists and regarded with great concern by potato and tomato growers since the Irish potato famine in the 1840s. P. infestans populations have continued to evolve, with unique clonal lineages arising which differ in pathogen fitness and pathogenicity, potentially impacting epidemiology. In 2012 and 2013, the US-23 clonal lineage predominated late blight epidemics in most U.S. potato and tomato production regions, including Wisconsin. This lineage was unknown prior to 2009. For isolates of three recently identified clonal lineages of P. infestans (US-22, US-23, and US-24), sporulation rates were experimentally determined on potato and tomato foliage and the effect of temperature on lesion growth rate on tomato was investigated. The US-22 and US-23 isolates had greater lesion growth rates on tomato than US-24 isolates. Sporulation rates for all isolates were greater on potato than tomato, and the US-23 isolates had greater sporulation rates on both tomato and potato than the US-22 and US-24 isolates. Experimentally determined correlates of fitness were input to the LATEBLIGHT model and epidemics were simulated using archived Wisconsin weather data from four growing seasons (2009 to 2012) to investigate the effect of isolates of these new lineages on late blight epidemiology. The fast lesion growth rates of US-22 and US-23 isolates resulted in severe epidemics in all years tested, particularly in 2011. The greater sporulation rates of P. infestans on potato resulted in simulated epidemics that progressed faster than epidemics simulated for tomato; the high sporulation rates of US-23 isolates resulted in simulated epidemics more severe than simulated epidemics of isolates of the US-22 and US-24 isolates and EC-1 clonal lineages on potato and tomato. Additionally, US-23 isolates consistently caused severe simulated epidemics when lesion growth rate and sporulation

  15. Giant Cell Tumour of Tendon Sheath Masquerading As Trigger Finger

    N Rahimawati

    2010-11-01

    Full Text Available We report a case of a 59-year-old female who presented in the general orthopaedic clinic with triggering of her right middle finger. She did not respond to conventional treatment methods; subsequently she underwent surgical open release under local anaesthesia. Five months postoperatively, the patient presented with signs and symptoms of acute flexor tenosynovitis, and was thought to have a postoperative infection. Re-examination by a hand surgeon raised the possibility of a different aetiology. Based on clinical findings and response to initial treatment, giant cell tumour of the flexor tendon sheath was suspected and later confirmed following surgical biopsy. A high index of suspicion and knowledge of the variegated presentations of giant cell tumour in the hand are beneficial in these types of cases.

  16. Primary malignant peripheral nerve sheath tumor at unusual location

    Souvagya Panigrahi

    2013-01-01

    Full Text Available Malignant peripheral nerve sheath tumor (MPNST is a rare soft tissue sarcoma. Most arise in association with major nerve trunks. Their most common anatomical sites are the proximal portions of the upper and lower extremities and the trunk. MPNSTs have rarely been reported in literature to occur in other unusual body parts. We review all such cases reported till now in terms of site of origin, surgical treatment, adjuvant therapy and outcome and shortly describe our experience with two of these cases. Both of our case presented with lump at unusual sites resembling neurofibroma, one at orbitotemporal area and other in the paraspinal region with characteristic feature of neurofibroma with the exception that both had very short history of progression. They underwent gross total removal of the tumor with adjuvant radiotherapy postoperatively. At 6-month follow-up both are doing well with no evidence of recurrence.

  17. Electron inertia effects on the planar plasma sheath problem

    Duarte, V. N.; Clemente, R. A.

    2011-01-01

    The steady one-dimensional planar plasma sheath problem, originally considered by Tonks and Langmuir, is revisited. Assuming continuously generated free-falling ions and isothermal electrons and taking into account electron inertia, it is possible to describe the problem in terms of three coupled integro-differential equations that can be numerically integrated. The inclusion of electron inertia in the model allows us to obtain the value of the plasma floating potential as resulting from an electron density discontinuity at the walls, where the electrons attain sound velocity and the electric potential is continuous. Results from numerical computation are presented in terms of plots for densities, electric potential, and particles velocities. Comparison with results from literature, corresponding to electron Maxwell-Boltzmann distribution (neglecting electron inertia), is also shown.

  18. Experiments on Alignment of Dust Particles in Plasma Sheath

    Samarian, A.A.; Vladimirov, S.V.; James, B.W.

    2005-01-01

    Here, we report an experimental investigation of the stability of vertical and horizontal confinement of dust particles levitated in an rf sheath. The experiments were carried out in argon plasma with micron-sized dust particles. Changes of particle arrangement were triggered by changing the discharge parameters, applying an additional bias to the confining electrode and by laser beam. The region where the transition was triggered by changes of discharge parameters and the transition from horizontal to vertical alignment has been found to be more pronounced than for the reverse transition. A clear hysteretic effect was observed for transitions triggered by changes of the confining voltage. A vertical alignment occurs in a system of two dust horizontally arranged particles with the decrease of the particle separation. This disruption is attributed to the formation of the common ion wake in the system

  19. File list: NoD.Neu.05.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available NoD.Neu.05.AllAg.Nerve_Sheath_Neoplasms mm9 No description Neural Nerve Sheath Neop...lasms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/NoD.Neu.05.AllAg.Nerve_Sheath_Neoplasms.bed ...

  20. File list: InP.Neu.10.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available InP.Neu.10.AllAg.Nerve_Sheath_Neoplasms mm9 Input control Neural Nerve Sheath Neopl...asms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/InP.Neu.10.AllAg.Nerve_Sheath_Neoplasms.bed ...

  1. File list: NoD.Neu.50.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available NoD.Neu.50.AllAg.Nerve_Sheath_Neoplasms mm9 No description Neural Nerve Sheath Neop...lasms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/NoD.Neu.50.AllAg.Nerve_Sheath_Neoplasms.bed ...

  2. File list: InP.Neu.05.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available InP.Neu.05.AllAg.Nerve_Sheath_Neoplasms mm9 Input control Neural Nerve Sheath Neopl...asms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/InP.Neu.05.AllAg.Nerve_Sheath_Neoplasms.bed ...

  3. File list: InP.Neu.20.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available InP.Neu.20.AllAg.Nerve_Sheath_Neoplasms mm9 Input control Neural Nerve Sheath Neopl...asms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/InP.Neu.20.AllAg.Nerve_Sheath_Neoplasms.bed ...

  4. File list: NoD.Neu.10.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available NoD.Neu.10.AllAg.Nerve_Sheath_Neoplasms mm9 No description Neural Nerve Sheath Neop...lasms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/NoD.Neu.10.AllAg.Nerve_Sheath_Neoplasms.bed ...

  5. File list: InP.Neu.50.AllAg.Nerve_Sheath_Neoplasms [Chip-atlas[Archive

    Full Text Available InP.Neu.50.AllAg.Nerve_Sheath_Neoplasms mm9 Input control Neural Nerve Sheath Neopl...asms http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/InP.Neu.50.AllAg.Nerve_Sheath_Neoplasms.bed ...

  6. A network approach to predict pathogenic genes for Fusarium graminearum.

    Xiaoping Liu

    Full Text Available Fusarium graminearum is the pathogenic agent of Fusarium head blight (FHB, which is a destructive disease on wheat and barley, thereby causing huge economic loss and health problems to human by contaminating foods. Identifying pathogenic genes can shed light on pathogenesis underlying the interaction between F. graminearum and its plant host. However, it is difficult to detect pathogenic genes for this destructive pathogen by time-consuming and expensive molecular biological experiments in lab. On the other hand, computational methods provide an alternative way to solve this problem. Since pathogenesis is a complicated procedure that involves complex regulations and interactions, the molecular interaction network of F. graminearum can give clues to potential pathogenic genes. Furthermore, the gene expression data of F. graminearum before and after its invasion into plant host can also provide useful information. In this paper, a novel systems biology approach is presented to predict pathogenic genes of F. graminearum based on molecular interaction network and gene expression data. With a small number of known pathogenic genes as seed genes, a subnetwork that consists of potential pathogenic genes is identified from the protein-protein interaction network (PPIN of F. graminearum, where the genes in the subnetwork are further required to be differentially expressed before and after the invasion of the pathogenic fungus. Therefore, the candidate genes in the subnetwork are expected to be involved in the same biological processes as seed genes, which imply that they are potential pathogenic genes. The prediction results show that most of the pathogenic genes of F. graminearum are enriched in two important signal transduction pathways, including G protein coupled receptor pathway and MAPK signaling pathway, which are known related to pathogenesis in other fungi. In addition, several pathogenic genes predicted by our method are verified in other

  7. Efficacy of epiphytic bacteria to prevent northern leaf blight caused by Exserohilum turcicum in maize.

    Sartori, Melina; Nesci, Andrea; García, Julián; Passone, María A; Montemarani, Analía; Etcheverry, Miriam

    Eight potential biological control agents (BCAs) were evaluated in planta in order to assess their effectiveness in reducing disease severity of northern leaf blight caused by Exserohilum turcicum. The assay was carried out in greenhouse. Twenty-six-day-old plants, V4 phenological stage, were inoculated with antagonists by foliar spray. Only one biocontrol agent was used per treatment. Ten days after this procedure, all treatments were inoculated with E. turcicum by foliar application. Treatments performed were: C-Et: control of E. turcicum; T1: isolate 1 (Enterococcus genus)+E. turcicum; T2: isolate 2 (Corynebacterium genus)+E. turcicum; T3: isolate 3 (Pantoea genus)+E. turcicum; T4: isolate 4 (Corynebacterium genus)+E. turcicum; T5: isolate 5 (Pantoea genus)+E. turcicum; T6: isolate 6 (Bacillus genus)+E. turcicum; T7: isolate 7 (Bacillus genus)+E. turcicum; T8: isolate 8 (Bacillus genus)+E. turcicum. Monitoring of antagonists on the phyllosphere was performed at different times. Furthermore, the percentage of infected leaves and, plant and leaf incidence were determined. Foliar application of different bacteria significantly reduced the leaf blight between 30-78% and 39-56% at 20 and 39 days respectively. It was observed that in the V10 stage of maize plants, isolate 8 (Bacillus spp.) caused the greatest effect on reducing the severity of northern leaf blight. Moreover, isolate 8 was the potential BCA that showed more stability in the phyllosphere. At 39 days, all potential biocontrol agents had a significant effect on controlling the disease caused by E. turcicum. Copyright © 2016 Asociación Argentina de Microbiología. Publicado por Elsevier España, S.L.U. All rights reserved.

  8. Crop connectivity under climate change: future environmental and geographic risks of potato late blight in Scotland.

    Skelsey, Peter; Cooke, David E L; Lynott, James S; Lees, Alison K

    2016-11-01

    The impact of climate change on dispersal processes is largely ignored in risk assessments for crop diseases, as inoculum is generally assumed to be ubiquitous and nonlimiting. We suggest that consideration of the impact of climate change on the connectivity of crops for inoculum transmission may provide additional explanatory and predictive power in disease risk assessments, leading to improved recommendations for agricultural adaptation to climate change. In this study, a crop-growth model was combined with aerobiological models and a newly developed infection risk model to provide a framework for quantifying the impact of future climates on the risk of disease occurrence and spread. The integrated model uses standard meteorological variables and can be easily adapted to various crop pathosystems characterized by airborne inoculum. In a case study, the framework was used with data defining the spatial distribution of potato crops in Scotland and spatially coherent, probabilistic climate change data to project the future connectivity of crop distributions for Phytophthora infestans (causal agent of potato late blight) inoculum and the subsequent risk of infection. Projections and control recommendations are provided for multiple combinations of potato cultivar and CO 2 emissions scenario, and temporal and spatial averaging schemes. Overall, we found that relative to current climatic conditions, the risk of late blight will increase in Scotland during the first half of the potato growing season and decrease during the second half. To guide adaptation strategies, we also investigated the potential impact of climate change-driven shifts in the cropping season. Advancing the start of the potato growing season by 1 month proved to be an effective strategy from both an agronomic and late blight management perspective. © 2016 John Wiley & Sons Ltd.

  9. EVALUATION OF TRICHODERMA SPP. ON BEAN CULTURE, IN ANTHRACNOSE, WEB BLIGHT AND ROOT-KNOT NEMATODE

    P. E. V. Aguiar

    2014-09-01

    Full Text Available Mato Grosso is the third largest producer of bean from Brazil, being the third harvest (irrigated the most productive, but diseases such as anthracnose, web blight and nematodes of galls cause losses to producers. In addition, a measure widely used and little studied for the control of diseases and nematodes in Mato Grosso is the biological control, which consists of the action of other microorganisms on phytopathogens. Thus, the objective of the present study was to evaluate the effect of Trichoderma harzianum and T. asperellum in the development (height of plants, chlorophyll and number of pods of culture of bean, in the control of anthracnose (Colletotrichum lindemuthianum, web blight (Rhizoctonia solani and in the population of Meloidogyne spp. in the soil. The experiment was accomplished in area experimental of University Federal of Mato Grosso/Campus Sinop. The experimental design was of entirely randomized with 12 parcels of 5m² each, with 3 treatments and 4 replications. The cultivar used was Whitey, carioca group, and the seed treatment performed with product Pyraclostrobin + Thiophanate Methyl + Fipronil and after drying of the inoculation of biocontrol agents and manual seeding. It was observed that the application of T. harzianum and T. asperellum, not promoted increase of chlorophyll, height of plants in bean culture, without reducing the population of Meloidogyne spp.. However, biocontrol agents have reduced the severity of anthracnose and web blight and promoted an increase in the average number of plant pods-1. It is therefore concluded that biocontrol agents show potential for application in bean culture in the North of Mato Grosso.

  10. Response of germinating barley seeds to Fusarium graminearum: The first molecular insight into Fusarium seedling blight

    Yang, Fen; Svensson, Birte; Finnie, Christine

    2011-01-01

    involved in primary metabolism and detoxification whereas the majority of down-regulated proteins were plant protease inhibitors. The results suggest that there is a link between increased energy metabolism and oxidative stress in the germinating barley seeds in response to F. graminearum infection, which......Fusarium seedling blight in cereals can result in significant reductions in plant establishment but has not received much attention. The disease often starts during seed germination due to sowing of the seeds infected by Fusarium spp. including Fusarium graminearum. In order to gain the first...

  11. Mitigating impact of thermal and rectified radio-frequency sheath potentials on edge localized modes

    Gui, B. [Institute of Plasma Physics Chinese Academy of Sciences, Hefei (China); Lawerence Livermore National Lab, Livermore, California 94550 (United States); Xu, X. Q. [Lawerence Livermore National Lab, Livermore, California 94550 (United States); Myra, J. R.; D' Ippolito, D. A. [Lodestar Research Corporation, Boulder, Colorado 80301 (United States)

    2014-11-15

    The mitigating impact of thermal and rectified radio frequency (RF) sheath potentials on the peeling-ballooning modes is studied non-linearly by employing a two-fluid three-field simulation model based on the BOUT++ framework. Additional shear flow and the Kelvin-Helmholtz effect due to the thermal and rectified RF sheath potential are induced. It is found that the shear flow increases the growth rate while the K-H effect decreases the growth rate slightly when there is a density gradient, but the energy loss of these cases is suppressed in the nonlinear phase. The stronger external electrostatic field due to the sheaths has a more significant effect on the energy loss suppression. From this study, it is found the growth rate in the linear phase mainly determines the onset of edge-localized modes, while the mode spectrum width in the nonlinear phase has an important impact on the turbulent transport. The wider mode spectrum leads to weaker turbulent transport and results in a smaller energy loss. Due to the thermal sheath and rectified RF sheath potential in the scrape-off-layer, the modified shear flow tears apart the peeling-ballooning filament and makes the mode spectrum wider, resulting in less energy loss. The perturbed electric potential and the parallel current near the sheath region is also suppressed locally due to the sheath boundary condition.

  12. Research on stress distribution regularity of cement sheaths of radial well based on ABAQUS

    Shi, Jihui; Cheng, Yuanfang; Li, Xiaolong; Xiao, Wen; Li, Menglai

    2017-12-01

    To ensure desirable outcome of hydraulic fracturing based on ultra-short radius radial systems, it is required to investigate the stress distribution regularity and stability of the cement sheath. On the basis of the theoretical model of the cement sheath stress distribution, a reservoir mechanical model was built using the finite element software, ABAQUS, according to the physical property of a certain oil reservoir of the Shengli oilfield. The stress distribution of the casing-cement-sheath-formation system under the practical condition was simulated, based on which analyses were conducted from multiple points of view. Results show that the stress on the internal interface of the cement sheath exceeds that on the external interface, and fluctuates with higher amplitudes, which means that the internal interface is the most failure-prone. The unevenness of the cement sheath stress distribution grows with the increasing horizontal principal stress ratio, and so does the variation magnitude. This indicates that higher horizontal principal stress ratios are unfavourable for the structural stability of the cement sheath. Both the wellbore quantity of the URRS and the physical property of the material can affect the cement sheath distribution. It is suggested to optimize the quantity of the radial wellbore and use cement with a lower elastic modulus and higher Poisson’s ratio. At last, the impact level of the above factor was analysed, with the help of the grey correlation analysis.

  13. Hertwig’s Epithelial Root Sheath Fate during Initial Cellular Cementogenesis in Rat Molars

    Yamamoto, Tsuneyuki; Yamada, Tamaki; Yamamoto, Tomomaya; Hasegawa, Tomoka; Hongo, Hiromi; Oda, Kimimitsu; Amizuka, Norio

    2015-01-01

    To elucidate the fate of the epithelial root sheath during initial cellular cementogenesis, we examined developing maxillary first molars of rats by immunohistochemistry for keratin, vimentin, and tissue non-specific alkaline phosphatase (TNALP) and by TdT-mediated dUTP nick end labeling (TUNEL). The advancing root end was divided into three sections, which follow three distinct stages of initial cellular cementogenesis: section 1, where the epithelial sheath is intact; section 2, where the epithelial sheath becomes fragmented; and section 3, where initial cellular cementogenesis begins. After fragmentation of the epithelial sheath, many keratin-positive epithelial sheath cells were embedded in the rapidly growing cellular cementum. A few unembedded epithelial cells located on the cementum surface. Dental follicle cells, precementoblasts, and cementoblasts showed immunoreactivity for vimentin and TNALP. In all three sections, there were virtually no cells possessing double immunoreactivity for vimentin-keratin or TNALP-keratin and only embedded epithelial cells showed TUNEL reactivity. Taken together, these findings suggest that: (1) epithelial sheath cells divide into two groups; one group is embedded in the cementum and thereafter dies by apoptosis, and the other survives on the cementum surface as epithelial cell rests of Malassez; and (2) epithelial sheath cells do not undergo epithelial-mesenchymal transition during initial cellular cementogenesis

  14. Statistical analysis of mirror mode waves in sheath regions driven by interplanetary coronal mass ejection

    Ala-Lahti, Matti M.; Kilpua, Emilia K. J.; Dimmock, Andrew P.; Osmane, Adnane; Pulkkinen, Tuija; Souček, Jan

    2018-05-01

    We present a comprehensive statistical analysis of mirror mode waves and the properties of their plasma surroundings in sheath regions driven by interplanetary coronal mass ejection (ICME). We have constructed a semi-automated method to identify mirror modes from the magnetic field data. We analyze 91 ICME sheath regions from January 1997 to April 2015 using data from the Wind spacecraft. The results imply that similarly to planetary magnetosheaths, mirror modes are also common structures in ICME sheaths. However, they occur almost exclusively as dip-like structures and in mirror stable plasma. We observe mirror modes throughout the sheath, from the bow shock to the ICME leading edge, but their amplitudes are largest closest to the shock. We also find that the shock strength (measured by Alfvén Mach number) is the most important parameter in controlling the occurrence of mirror modes. Our findings suggest that in ICME sheaths the dominant source of free energy for mirror mode generation is the shock compression. We also suggest that mirror modes that are found deeper in the sheath are remnants from earlier times of the sheath evolution, generated also in the vicinity of the shock.

  15. The collisional capacitive RF sheath and the assumption of a sharp electron edge

    Brinkmann, Ralf Peter

    2008-10-01

    The transition from quasi-neutrality to charge depletion is one of the characteristic features of the plasma boundary sheath. It is often described in terms of the so-called step model which assumes a transition point (electron step) where the electron density drops from a value equal to the ion density (in the bulk) to a value of zero (in the sheath). Inserted into Poisson's equation, the step model yields an expression for the field which is realistic deep in the sheath but fails to merge correctly into the ambipolar field of the bulk. This work studies the consequences of that approximation for the example of the collision-dominated, capacitive RF sheath by Lieberman [1]. First, the model is solved exactly, using a relaxation scheme. Then, the step approximation is applied which recovers Lieberman's semi-analytical solution. It is demonstrated that the step approximation induces a spurious divergence of the ion density at the sheath edge and prevents a matching of the sheath model to a bulk model. Integral sheath quantities, on the other hand, like the capacitance or the overall voltage drop, are faithfully reproduced. [1] M. A. Lieberman, IEEE Trans. Plasma Sci. 16, pp. 638-644 (1988).

  16. Verification of high voltage rf capacitive sheath models with particle-in-cell simulations

    Wang, Ying; Lieberman, Michael; Verboncoeur, John

    2009-10-01

    Collisionless and collisional high voltage rf capacitive sheath models were developed in the late 1980's [1]. Given the external parameters of a single-frequency capacitively coupled discharge, plasma parameters including sheath width, electron and ion temperature, plasma density, power, and ion bombarding energy can be estimated. One-dimensional electrostatic PIC codes XPDP1 [2] and OOPD1 [3] are used to investigate plasma behaviors within rf sheaths and bulk plasma. Electron-neutral collisions only are considered for collisionless sheaths, while ion-neutral collisions are taken into account for collisional sheaths. The collisionless sheath model is verified very well by PIC simulations for the rf current-driven and voltage-driven cases. Results will be reported for collisional sheaths also. [1] M. A. Lieberman, IEEE Trans. Plasma Sci. 16 (1988) 638; 17 (1989) 338 [2] J. P. Verboncoeur, M. V. Alves, V. Vahedi, and C. K. Birdsall, J. Comp. Phys. 104 (1993) 321 [3] J. P. Verboncoeur, A. B. Langdon and N. T. Gladd, Comp. Phys. Comm. 87 (1995) 199

  17. Accounting for Debye sheath expansion for proud Langmuir probes in magnetic confinement fusion plasmas.

    Tsui, C K; Boedo, J A; Stangeby, P C

    2018-01-01

    A Child-Langmuir law-based method for accounting for Debye sheath expansion while fitting the current-voltage I-V characteristic of proud Langmuir probes (electrodes that extend into the volume of the plasma) is described. For Langmuir probes of a typical size used in tokamak plasmas, these new estimates of electron temperature and ion saturation current density values decreased by up to 60% compared to methods that did not account for sheath expansion. Changes to the collection area are modeled using the Child-Langmuir law and effective expansion perimeter l p , and the model is thus referred to as the "perimeter sheath expansion method." l p is determined solely from electrode geometry, so the method may be employed without prior measurement of the magnitude of the sheath expansion effects for a given Langmuir probe and can be used for electrodes of different geometries. This method correctly predicts the non-saturating ΔI/ΔV slope for cold, low-density plasmas where sheath-expansion effects are strong, as well as for hot plasmas where ΔI/ΔV ∼ 0, though it is shown that the sheath can still significantly affect the collection area in these hot conditions. The perimeter sheath expansion method has several advantages compared to methods where the non-saturating current is fitted: (1) It is more resilient to scatter in the I-V characteristics observed in turbulent plasmas. (2) It is able to separate the contributions to the ΔI/ΔV slope from sheath expansion to that of the high energy electron tail in high Te conditions. (3) It calculates the change in the collection area due to the Debye sheath for conditions where ΔI/ΔV ∼ 0 and for V = V f .

  18. Soil sheaths, photosynthate distribution to roots, and rhizosphere water relations for Opuntia ficus-indica

    Huang, B.; North, G.B.; Nobel, P.S. (Univ. of California, Los Angeles, CA (United States))

    1993-09-01

    Soil sheaths incorporating aggregated soil particles surround young roots of many species, but the effects of such sheaths on water movement between roots and the soil are largely unknown. The quantity and location of root exudates associated with soil sheath along the entire length of its young roots, except within 1.4 cm of the tip. The soil sheaths, which average 0.7 mm in thickness, were composed of soil particles and root hairs, both of which were covered with exuded mucilaginous material. As determined with a [sup 14]C pulse-labeling technique, 2% of newly fixed [sup 14]C-photosynthate was translocated into the roots at 3d, 6% at 9 d, and 8% at 15 d after labeling. The fraction of insoluble [sup 14]C in the roots increased twofold from 3 d to 15 d. Over the same time period, 6%-9% of the [sup 14]C translocated to the roots was exuded into the soil. The soluble [sup 14]C compounds exuded into the soil were greater in the 3-cm segment at the root tip than elsewhere along the root, whereas mucilage was exuded relatively uniformly along roots 15 cm in length. The volumetric efflux of water increase for both sheathed and unsheathed roots as the soil water potential decreased form -0.1 MPa to -1.0 MPa. The efflux rate was greater for unsheathed roots than for sheathed roots, which were more turgid and had a higher water potential, especially at lower soil water potentials. During drying, soil particles in the sheaths aggregate more tightly, making the sheaths less permeable to water and possibly creating air gaps. The soil sheaths of O. ficus-indica thus reduce water loss from the roots to a drying soil. 34 refs., 6 figs., 1 tab.

  19. Evaluation of the Effusion within Biceps Long Head Tendon Sheath Using Ultrasonography

    Park, In; Lee, Hyo-Jin; Kim, Sung-Eun; Bae, Sung-Ho; Lee, Kwang-Yeol; Park, Kwang-Sun

    2015-01-01

    Background Many shoulder diseases are related to glenohumeral joint synovitis and effusion. The purpose of the present study is to detect effusion within the biceps long head tendon sheath as the sign of glenohumeral joint synovitis using ultrasonography, and to evaluate the clinical meaning of effusion within the biceps long head tendon sheath. Methods A consecutive series of 569 patients who underwent ultrasonography for shoulder pain were reviewed retrospectively and ultimately, 303 patients were included. The authors evaluated the incidence and amount of the effusion within the biceps long head tendon sheath on the ultrasonographic short axis view. Furthermore, the authors evaluated the correlation between the amount of effusion within the biceps long head tendon sheath and the range of motion and the functional score. Results The effusion within the biceps long head tendon sheath was detected in 58.42% of the patients studied: 69.23% in adhesive capsulitis, 56.69% in rotator cuff tear, 41.03% in calcific tendinitis, and 33.33% in biceps tendinitis. The average amount of the effusion within the biceps long head tendon sheath was 1.7 ± 1.6 mm, and it was measured to be the largest in adhesive capsulitis. The amount of effusion within biceps long head tendon sheath showed a moderate to high degree of correlation with the range of motion, and a low degree of correlation with the functional score and visual analogue scale for pain in each type of shoulder disease. Conclusions The effusion within the biceps long head tendon sheath is closely related to the range of motion and clinical scores in patients with painful shoulders. Ultrasonographic detection of the effusion within the biceps long head tendon sheath might be a simple and easy method to evaluate shoulder function. PMID:26330958

  20. Emerging Pathogens Initiative (EPI)

    Department of Veterans Affairs — The Emerging Pathogens Initiative (EPI) database contains emerging pathogens information from the local Veterans Affairs Medical Centers (VAMCs). The EPI software...

  1. Bacillus velezensis RC 218 as a biocontrol agent to reduce Fusarium head blight and deoxynivalenol accumulation: Genome sequencing and secondary metabolite cluster profiles.

    Palazzini, Juan M; Dunlap, Christopher A; Bowman, Michael J; Chulze, Sofía N

    2016-11-01

    Bacillus subtilis RC 218 was originally isolated from wheat anthers as a potential antagonist of Fusarium graminearum, the causal agent of Fusarium head blight (FHB). It was demonstrated to have antagonist activity against the plant pathogen under in vitro and greenhouse assays. The current study extends characterizing B. subtilis RC 218 with a field study and genome sequencing. The field study demonstrated that B. subtilis RC 218 could reduce disease severity and the associated mycotoxin (deoxynivalenol) accumulation, under field conditions. The genome sequencing allowed us to accurately determine the taxonomy of the strain using a phylogenomic approach, which places it in the Bacillus velezensis clade. In addition, the draft genome allowed us to use bioinformatics to mine the genome for potential metabolites. The genome mining allowed us to identify 9 active secondary metabolites conserved by all B. velezensis strains and one additional secondary metabolite, the lantibiotic ericin, which is unique to this strain. This study represents the first confirmed production of ericin by a B. velezensis strain. The genome also allowed us to do a comparative genomics with its closest relatives and compare the secondary metabolite production of the publically available B. velezensis genomes. The results showed that the diversity in secondary metabolites of strains in the B. velezensis clade is driven by strains making different antibacterials. Copyright © 2016 Elsevier GmbH. All rights reserved.

  2. mQTL-seq and classical mapping implicates the role of an AT-HOOK MOTIF CONTAINING NUCLEAR LOCALIZED (AHL) family gene in Ascochyta blight resistance of chickpea.

    Kumar, Kamal; Purayannur, Savithri; Kaladhar, Vemula Chandra; Parida, Swarup Kumar; Verma, Praveen Kumar

    2018-03-01

    Ascochyta blight (AB) caused by the fungal pathogen Ascochyta rabiei is a serious foliar disease of chickpea (Cicer arietinum L.). Despite many genetic studies on chickpea-Ascochyta interaction, genome-wide scan of chickpea for the identification of AB-associated quantitative trait loci (QTLs) and their gene(s) has not been accomplished. To elucidate narrow QTLs for AB resistance, here, we report the use of multiple QTL-sequencing approach on 2 sets of extreme AB phenotype bulks derived from Cicer intraspecific and interspecific crosses. Two major QTLs, qABR4.1 and qABR4.2, and a minor QTL, qABR4.3, were identified on assembled chickpea pseudomolecule 4. We narrowed qABR4.1 to a "robust region" at 4.568-4.618 Mb through mapping on a larger intraspecific cross-derived population and comparative analysis. Among 4 genes, the CaAHL18 gene showed higher expression under Ascochyta stress in AB resistant parent suggesting that it is the candidate gene under "robust qABR4.1." Dual-luciferase assay with CaAHL18 polymorphic cis-regulatory sequences showed that allelic variation is associated with higher expression. Thus, our findings on chickpea-Ascochyta interaction have narrowed down AB resistance associated QTLs on chickpea physical map. The narrowed QTLs and gene-associated markers will help in biotechnological and breeding programs for chickpea improvement. © 2018 John Wiley & Sons Ltd.

  3. Dust charging and charge fluctuations in a weakly collisional radio-frequency sheath at low pressure

    Piel, Alexander; Schmidt, Christian

    2015-01-01

    Models for the charging of dust particles in the bulk plasma and in the sheath region are discussed. A new model is proposed that describes collision-enhanced ion currents in the sheath. The collisions result in a substantial reduction of the negative charge of the dust. Experimental data for the dust charge in the sheath can be described by this model when a Bi-Maxwellian electron distribution is taken into account. Expressions for the dust charging rate for all considered models are presented and their influence on the rise of the kinetic dust temperature is discussed

  4. Normal tendon sheath of the second to fifth fingers as seen on oblique views

    Fischer, E.

    1984-01-01

    Oblique views of the fingers, using a low kilovolt technique, show a portion of the tendon sheaths which can be regarded as representative of the entire sheath. Because of the varying obliquity of each finger, this proportion differs in the fingers. With increasing age the projected portion of the sheath becomes smaller because it is covered by increasing bone formation in the insertion of the tendon sheat. Normal values have been obtained for adults according to their decades; from these, quite minor degrees of tendon sheat thickening can be determined. In camptodactyly of the fifth finger, which is not uncommon, the tendon sheat may be widened in the absence of a tenosynovitis.

  5. Influence of vacuum space on formation of potential sheath in plasmas

    Uhm, H.S.

    1997-01-01

    Properties of potential sheaths developed in plasmas are investigated in terms of the plasma Debye length and the dimension of vacuum space. Biased plasma potential and the potential profile depend very sensitively on the geometrical configuration of plasma and vacuum space. The potential sheath is never developed near electrodes in high-density plasmas where the Debye length is much less than the dimension of the vacuum space. In this case, most of the potential drops occur in the vacuum space and almost no electric field exists inside the plasma. Parametric investigation of the potential sheath in terms of the vacuum-space and plasma dimensions is carried out. (orig.)

  6. Modelling of the dual frequency capacitive sheath in the intermediate pressure range

    Boyle, P C; Robiche, J; Turner, M M

    2004-01-01

    The nonlinearity of the plasma sheath in dual frequency capacitively coupled reactors is investigated for frequencies well above the ion plasma frequency. This work focuses on the behaviour of the voltage and the sheath width with respect to the driving current source and the collisionality regime. For typical plasma processing applications, the gas pressure ranges from a few milliTorrs to hundreds of milliTorrs, and the ion dynamics span different collisional regimes. To describe these different ion dynamics, we have used a collisionless model and a variable mobility model. The sheath widths and the voltages obtained from these two models have then been compared

  7. Abduction of Arm Facilitates Correction of Kinked Peel-Away Sheath During Subclavian Central Line Placement.

    Kim, Sunghoon

    2015-12-01

    A tunneled central line catheter placement using a subclavian vein approach can be complicated by an occurrence of peel-away sheath kink which prevents the advancement of the catheter through the sheath. The kink is created due to the angular junction of subclavian and brachiocephalic veins which meet at 90 degree angle. A technique is described which corrects the peel-away sheath kink by extending the subclavian/brachiocephalic vein angle to greater than 90 degrees by abducting the patient's arm. Copyright © 2015 Elsevier Inc. All rights reserved.

  8. The relative axial expansions under irradiation of stacks of UO{sub 2} pellets in zircaloy sheaths

    Notley, M. J.F.

    1962-08-15

    An experiment was performed to measure the relative axial movement of UO{sub 2} fuel pellets inside a Zircaloy sheath. Although the results must be treated with some reservation, the inferences are that there is very little relative movement between the fuel and the sheath when the two are in firm pressure contact. Relative movement was in the range 0.075 {+-} 0.03 cm for a 30 cm fuel length, and was not greatly affected by the power output, profile of the pellet end-faces or the diametral clearance left between the fuel and the sheath on assembly. However in two elements that had thick sheaths to withstand the coolant pressure and that were assembled with large diametral clearances (2% of the diameter) the available axial clearance for relative fuel/ sheath movement (1%) was fully taken up. The thin sheathed elements showed residual axial expansions of up to 0.17 cm, indicating that the pellets move relative to the sheath only until frictional forces are sufficient for the sheath to grip the fuel; thereafter the sheath is extended. The measurements also indicate that sheath elongation is governed by the temperature at the contact points between adjacent pellets, eg. at the inner edge of a pellet shoulder, as long as that temperature is below approximately 1000{sup o}C. At higher temperatures, the UO{sub 2} is too plastic to exert sufficient force to strain the sheath. (author)

  9. Dissociation and Re-Aggregation of Multicell-Ensheathed Fragments Responsible for Rapid Production of Massive Clumps of Leptothrix Sheaths

    Kunoh, Tatsuki; Nagaoka, Noriyuki; McFarlane, Ian R.; Tamura, Katsunori; El-Naggar, Mohamed Y.; Kunoh, Hitoshi; Takada, Jun

    2016-01-01

    Species of the Fe/Mn-oxidizing bacteria Leptothrix produce tremendous amounts of microtubular, Fe/Mn-encrusted sheaths within a few days in outwells of groundwater that can rapidly clog water systems. To understand this mode of rapid sheath production and define the timescales involved, behaviors of sheath-forming Leptothrix sp. strain OUMS1 were examined using time-lapse video at the initial stage of sheath formation. OUMS1 formed clumps of tangled sheaths. Electron microscopy confirmed the presence of a thin layer of bacterial exopolymer fibrils around catenulate cells (corresponding to the immature sheath). In time-lapse videos, numerous sheath filaments that extended from the periphery of sheath clumps repeatedly fragmented at the apex of the same fragment, the fragments then aggregated and again elongated, eventually forming a large sheath clump comprising tangled sheaths within two days. In this study, we found that fast microscopic fragmentation, dissociation, re-aggregation and re-elongation events are the basis of the rapid, massive production of Leptothrix sheaths typically observed at macroscopic scales. PMID:27490579

  10. Development of the variety for resistance against bacterial leaf-blight in rice with thermal neutrons

    Nakai, Hirokazu

    1990-01-01

    In search for the development of genes for resistance against bacterial leaf-blight in rice, thermal neutrons generated from the Research Reactor at the Kyoto University have been applied to the breeding. In this paper, the developmental outcome is described, and a potential application of thermal neutrons for breeding the variety of resistance against bacterial leaf-blight in rice is reviewed. When thermal neutrons were delivered to the rice, the ratio of absorbed doses by B-10, which is contained in a small quantity in the plant, was found to be larger than expected. This implies characteristic effects of thermal neutrons on the plant. When boric acid was incorporated into the plant before irradiation, the effect of thermal neutrons per irradiation time was considered to become great. The frequency of mutations for resistance was significantly higher by thermal neutron, as compared with that induced by other mutagens, such as gamma radiation, ethylene-imine, ethyl-methane-sulfonate, and nitroso-methyl-urea. Genetic analysis of mutants for resistance revealed recessive genes and polygenes. Finally, the application of thermal neutrons and other radiations would contribute greatly to a resolution of serious pollution problems in global food and environment. (N.K.)

  11. An Assessment of the Impact of Two Late Blight Tolerant Potato Varieties

    Walingo, A.M.

    2002-01-01

    A study was made to assess the impact of two late blight tolerant potato varieties Tigoni and Asante releases in 1998. The appraisal and impact assessment set out to collect information on the adoption of the two varieties; assess their economic impact; and forecast future prospects for these two varieties and identity constraints to their adoption and diffusion in three divisions of Molo, Timboroa and Laikipia. The methodology adopted was conducting field surveys between September and October 2001, and gathering secondary information from the Ministry of Agriculture, research Centres, seed companies, NGO's and farmers. Results indicated that high yield, early maturity, tolerant to late blight, good market for ware potatoes and good taste were the advantages of Tigoni and Asante, widely recognised in all survey sites. Disadvantages of Tigoni and Asante were poor storage, rapid greening of tubers (mainly for Tigoni), and limited availability of planting material. The two varieties had higher yield benefits, net benefit per hectare and higher rates of return compared to the local varieties. the rate of returns when the local cultivars were substituted by the new improved varieties ranged from 556 to 1070%. Data on diffusion of Tigoni and Asante showed that combined acreage of varieties Tigoni and Asante rose to 196.3, 137.5 and 1476 ha in Molo, Timboroa and Laikipia respectively. The future forecast for the two varieties is good if the limitation on seed availability is addressed

  12. Transgenic expression of lactoferrin imparts enhanced resistance to head blight of wheat caused by Fusarium graminearum.

    Han, Jigang; Lakshman, Dilip K; Galvez, Leny C; Mitra, Sharmila; Baenziger, Peter Stephen; Mitra, Amitava

    2012-03-09

    The development of plant gene transfer systems has allowed for the introgression of alien genes into plant genomes for novel disease control strategies, thus providing a mechanism for broadening the genetic resources available to plant breeders. Using the tools of plant genetic engineering, a broad-spectrum antimicrobial gene was tested for resistance against head blight caused by Fusarium graminearum Schwabe, a devastating disease of wheat (Triticum aestivum L.) and barley (Hordeum vulgare L.) that reduces both grain yield and quality. A construct containing a bovine lactoferrin cDNA was used to transform wheat using an Agrobacterium-mediated DNA transfer system to express this antimicrobial protein in transgenic wheat. Transformants were analyzed by Northern and Western blots to determine lactoferrin gene expression levels and were inoculated with the head blight disease fungus F. graminearum. Transgenic wheat showed a significant reduction of disease incidence caused by F. graminearum compared to control wheat plants. The level of resistance in the highly susceptible wheat cultivar Bobwhite was significantly higher in transgenic plants compared to control Bobwhite and two untransformed commercial wheat cultivars, susceptible Wheaton and tolerant ND 2710. Quantification of the expressed lactoferrin protein by ELISA in transgenic wheat indicated a positive correlation between the lactoferrin gene expression levels and the levels of disease resistance. Introgression of the lactoferrin gene into elite commercial wheat, barley and other susceptible cereals may enhance resistance to F. graminearum.

  13. OCCURENCE OF FUSARIUM HEAD BLIGHT OF WHEAT IN SLOVAKIA UNDER THE NATURAL INFECTION

    Kamil Hudec

    2013-09-01

    Full Text Available Occurrence of Fusarium head blight FHB was documented during two consecutive years in June 2011 2012 under the natural conditions in winter wheat Triticum aestivum L. Observations were conducted at six different localities in four climatic regions in Slovakia. Incidence and severity of FHB were evaluated at the end of flowering stage in three replications. Each replication contained 100 spikes. These data served as a basis for FHB index calculations. Obtained FHB index values indicated that the environmental conditions of the year 2011 were more favourable to the development of FHB infection. Higher FHB index values were reached at localities with precipitation higher than 100% of long-term average. Although significantly higher incidence of heads with FHB symptoms was recorded in climatic region 02 quite warm, dry, hilly, correlation between the climatic regions was not confirmed. Except of the climatic conditions, the FHB development can be influenced by nitrogen application. The highest levels of FHB index was in coincidence with the highest and the lowest nitrogen rates applied. In all other cases, the effect of the mineral nutrition on head blight attack was unclear. Analyses of nitrogen forms applied revealed that nitrogen forms had no impact on FHB index value.

  14. Future prospects for ascochyta blight resistance breeding in cool season food legumes

    Diego eRubiales

    2012-02-01

    Full Text Available Legume cultivation is strongly hampered by the occurrence of ascochyta blights. Strategies of control have been developed but only marginal successes have been achieved. Breeding for disease resistance is regarded the most cost efficient method of control. Significant genetic variation for disease resistance exists in most legume crops with numerous germplasm lines maintained, providing an excellent resource for plant breeders. Fast and reliable screening methods have been adjusted to fulfil breeding programmes needs. However, the complex inheritance controlled quantitatively by multiple genes, have been difficult to manipulate. Successful application of biotechnology to ascochyta blight resistance breeding in legume crops will facilitate both a good biological knowledge of the crops and of the mechanisms underlying resistance. The current focus in applied breeding is leveraging biotechnological tools to develop more and better markers to speed up the delivery of improved cultivars to the farmer. To date, however, progress in marker development and delivery of useful markers has been slow. The limited saturation of the genomic regions bearing putative QTLs in legume crops makes difficult to identify the most tightly-linked markers

  15. Transgenic expression of lactoferrin imparts enhanced resistance to head blight of wheat caused by Fusarium graminearum

    Han Jigang

    2012-03-01

    Full Text Available Abstract Background The development of plant gene transfer systems has allowed for the introgression of alien genes into plant genomes for novel disease control strategies, thus providing a mechanism for broadening the genetic resources available to plant breeders. Using the tools of plant genetic engineering, a broad-spectrum antimicrobial gene was tested for resistance against head blight caused by Fusarium graminearum Schwabe, a devastating disease of wheat (Triticum aestivum L. and barley (Hordeum vulgare L. that reduces both grain yield and quality. Results A construct containing a bovine lactoferrin cDNA was used to transform wheat using an Agrobacterium-mediated DNA transfer system to express this antimicrobial protein in transgenic wheat. Transformants were analyzed by Northern and Western blots to determine lactoferrin gene expression levels and were inoculated with the head blight disease fungus F. graminearum. Transgenic wheat showed a significant reduction of disease incidence caused by F. graminearum compared to control wheat plants. The level of resistance in the highly susceptible wheat cultivar Bobwhite was significantly higher in transgenic plants compared to control Bobwhite and two untransformed commercial wheat cultivars, susceptible Wheaton and tolerant ND 2710. Quantification of the expressed lactoferrin protein by ELISA in transgenic wheat indicated a positive correlation between the lactoferrin gene expression levels and the levels of disease resistance. Conclusions Introgression of the lactoferrin gene into elite commercial wheat, barley and other susceptible cereals may enhance resistance to F. graminearum.

  16. Effects of Fungicides, Time of Application, and Application Method on Control of Sclerotinia Blight in Peanut

    Jason E. Woodward

    2015-01-01

    Full Text Available Field studies were conducted from 2007 to 2010 to evaluate the response of peanut cultivars to different fungicides, application timings, and methods. Overall, fungicides reduced Sclerotinia blight incidence and increased pod yields when applied to susceptible and partially resistant cultivars. Disease suppression was greater when full fungicide rates were applied preventatively; however, yields between fungicide treated plots were similar. Lower levels of disease and higher yields were achieved with the partially resistant cultivar Tamrun OL07 compared to the susceptible cultivars Flavor Runner 458 and Tamrun OL 02. Despite possessing improved resistance Tamrun OL07 responded to all fungicide applications. While similar levels of disease control were achieved with broadcast or banded applications made during the day or at night, the yield response for the different application methods was inconsistent among years. A negative relationship (slope = −73.8; R2=0.73; P<0.01 was observed between final disease incidence ratings and yield data from studies where a fungicide response was observed. These studies suggest that both boscalid and fluazinam are effective at controlling Sclerotinia blight in peanuts. Alternative management strategies such as nighttime and banded applications could allow for lower fungicide rates to be used; however, additional studies are warranted.

  17. Stemphylium Leaf Blight of Garlic (Allium sativum in Spain: Taxonomy and In Vitro Fungicide Response

    Laura Gálvez

    2016-10-01

    Full Text Available The most serious aerial disease of garlic is leaf blight caused by Stemphylium spp. Geographical variation in the causal agent of this disease is indicated. Stemphylium vesicarium has been reported in Spain, whereas S. solani is the most prevalent species recorded in China. In this study, Stemphylium isolates were obtained from symptomatic garlic plants sampled from the main Spanish production areas. Sequence data for the ITS1–5.8S–ITS2 region enabled assignation of the isolates to the Pleospora herbarum complex and clearly distinguished the isolates from S. solani. Conidial morphology of the isolates corresponded to that of S. vesicarium and clearly discriminated them from S. alfalfae and S. herbarum on the basis of the size and septation pattern of mature conidia. Conidial morphology as well as conidial length, width and length:width ratio also allowed the Spanish isolates to be distinguished from S. botryosum and S. herbarum. Control of leaf blight of garlic is not well established. Few studies are available regarding the effectiveness of chemical treatments to reduce Stemphylium spp. incidence on garlic. The effectiveness of nine fungicides of different chemical groups to reduce Stemphylium mycelial growth in vitro was tested. Boscalid + pyraclostrobin (group name, succinate dehydrogenase inhibitors + quinone outside inhibitors, iprodione (dicar-boximide, and prochloraz (demethylation inhibitors were highly effective at reducing mycelial growth in S. vesicarium with EC₅₀ values less than 5 ppm. In general, the effectiveness of the fungicide was enhanced with increasing dosage.

  18. Bacterial spot and early blight biocontrol by epiphytic bacteria in tomato plants

    Roberto Lanna Filho

    2010-12-01

    Full Text Available The objective of this work was to evaluate in vitro and in vivo biocontrol of bacterial spot (Xanthomonas vesicatoria and early blight (Alternaria solani by the epiphytic bacteria Paenibacillus macerans and Bacillus pumilus. Tomato plants were previously sprayed with epiphytic bacteria, benzalkonium chloride and PBS buffer and, after four days, they were inoculated with A. solani and X. vesicatoria. To determine the phytopathogenic bacteria population, leaflet samples were collected from each treatment every 24 hours, for seven days, and plated on semi-selective medium. The effect of epiphytic bacteria over phytopathogens was performed by the antibiosis test and antagonistic activity measured by inhibition zone diameter. The epiphytic and benzalkonium chloride drastically reduced the severity of early blight and bacterial spot in comparison to the control (PBS. In detached leaflets, the epiphytic bacteria reduced in 70% the number of phytopathogenic bacteria cells in the phylloplane. The antibiosis test showed that the epiphytic bacteria efficiently inhibit the phytopathogens growth. In all the bioassays, the epiphytic bacteria protect tomato plants against the phytopathogens

  19. Deoxynivalenol in wheat and wheat products from a harvest affected by fusarium head blight

    Lidiane Viera MACHADO

    Full Text Available Abstract Fusarium head blight is an important disease occurring in wheat, caused mainly by the fungus Fusarium graminearum. In addition to direct damage to crops, reduced quality and yield losses, the infected grains can accumulate mycotoxins (toxic metabolites originating from prior fungal growth, especially deoxynivalenol (DON. Wheat crops harvested in 2014/2015 in southern Brazil were affected by high levels of Fusarium head blight. In this context, the aim of this study was evaluate the mycotoxicological quality of Brazilian wheat grains and wheat products (wheat flour and wheat bran for DON. DON contamination was evaluated in 1,504 wheat and wheat product samples produced in Brazil during 2014. It was determined by high performance liquid chromatograph fitted to a mass spectrometer (LC-MS / MS. The results showed that 1,000 (66.5% out of the total samples tested were positive for DON. The mean level of sample contamination was 1047 µg.kg-1, but only 242 samples (16.1% had contamination levels above the maximum permissible levels (MPL - the maximum content allowed by current Brazilian regulation. As of 2017, MPL will be stricter. Thus, research should be conducted on DON contamination of wheat and wheat products, since wheat is a raw material widely used in the food industry, and DON can cause serious harm to public health.

  20. Stemphylium Leaf Blight of Garlic (Allium sativum ) in Spain: Taxonomy and In Vitro Fungicide Response

    Gálvez, Laura; Gil-Serna, Jéssica; García, Marta; Iglesias, Concepción; Palmero, Daniel

    2016-01-01

    The most serious aerial disease of garlic is leaf blight caused by Stemphylium spp. Geographical variation in the causal agent of this disease is indicated. Stemphylium vesicarium has been reported in Spain, whereas S. solani is the most prevalent species recorded in China. In this study, Stemphylium isolates were obtained from symptomatic garlic plants sampled from the main Spanish production areas. Sequence data for the ITS1–5.8S–ITS2 region enabled assignation of the isolates to the Pleospora herbarum complex and clearly distinguished the isolates from S. solani. Conidial morphology of the isolates corresponded to that of S. vesicarium and clearly discriminated them from S. alfalfae and S. herbarum on the basis of the size and septation pattern of mature conidia. Conidial morphology as well as conidial length, width and length:width ratio also allowed the Spanish isolates to be distinguished from S. botryosum and S. herbarum. Control of leaf blight of garlic is not well established. Few studies are available regarding the effectiveness of chemical treatments to reduce Stemphylium spp. incidence on garlic. The effectiveness of nine fungicides of different chemical groups to reduce Stemphylium mycelial growth in vitro was tested. Boscalid + pyraclostrobin (group name, succinate dehydrogenase inhibitors + quinone outside inhibitors), iprodione (dicar-boximide), and prochloraz (demethylation inhibitors) were highly effective at reducing mycelial growth in S. vesicarium with EC50 values less than 5 ppm. In general, the effectiveness of the fungicide was enhanced with increasing dosage. PMID:27721688

  1. Microgravity-Driven Optic Nerve/Sheath Biomechanics Simulations

    Ethier, C. R.; Feola, A.; Myers, J. G.; Nelson, E.; Raykin, J.; Samuels, B.

    2016-01-01

    Visual Impairment and Intracranial Pressure (VIIP) syndrome is a concern for long-duration space flight. Current thinking suggests that the ocular changes observed in VIIP syndrome are related to cephalad fluid shifts resulting in altered fluid pressures [1]. In particular, we hypothesize that increased intracranial pressure (ICP) drives connective tissue remodeling of the posterior eye and optic nerve sheath (ONS). We describe here finite element (FE) modeling designed to understand how altered pressures, particularly altered ICP, affect the tissues of the posterior eye and optic nerve sheath (ONS) in VIIP. METHODS: Additional description of the modeling methodology is provided in the companion IWS abstract by Feola et al. In brief, a geometric model of the posterior eye and optic nerve, including the ONS, was created and the effects of fluid pressures on tissue deformations were simulated. We considered three ICP scenarios: an elevated ICP assumed to occur in chronic microgravity, and ICP in the upright and supine positions on earth. Within each scenario we used Latin hypercube sampling (LHS) to consider a range of ICPs, ONH tissue mechanical properties, intraocular pressures (IOPs) and mean arterial pressures (MAPs). The outcome measures were biomechanical strains in the lamina cribrosa, optic nerve and retina; here we focus on peak values of these strains, since elevated strain alters cell phenotype and induce tissue remodeling. In 3D, the strain field can be decomposed into three orthogonal components, denoted as first, second and third principal strains. RESULTS AND CONCLUSIONS: For baseline material properties, increasing ICP from 0 to 20 mmHg significantly changed strains within the posterior eye and ONS (Fig. 1), indicating that elevated ICP affects ocular tissue biomechanics. Notably, strains in the lamina cribrosa and retina became less extreme as ICP increased; however, within the optic nerve, the occurrence of such extreme strains greatly increased as

  2. Integrated Metabolo-Transcriptomics Reveals Fusarium Head Blight Candidate Resistance Genes in Wheat QTL-Fhb2.

    Dhananjay Dhokane

    Full Text Available Fusarium head blight (FHB caused by Fusarium graminearum not only causes severe losses in yield, but also reduces quality of wheat grain by accumulating mycotoxins. Breeding for host plant resistance is considered as the best strategy to manage FHB. Resistance in wheat to FHB is quantitative in nature, involving cumulative effects of many genes governing resistance. The poor understanding of genetics and lack of precise phenotyping has hindered the development of FHB resistant cultivars. Though more than 100 QTLs imparting FHB resistance have been reported, none discovered the specific genes localized within the QTL region, nor the underlying mechanisms of resistance.In our study recombinant inbred lines (RILs carrying resistant (R-RIL and susceptible (S-RIL alleles of QTL-Fhb2 were subjected to metabolome and transcriptome profiling to discover the candidate genes. Metabolome profiling detected a higher abundance of metabolites belonging to phenylpropanoid, lignin, glycerophospholipid, flavonoid, fatty acid, and terpenoid biosynthetic pathways in R-RIL than in S-RIL. Transcriptome analysis revealed up-regulation of several receptor kinases, transcription factors, signaling, mycotoxin detoxification and resistance related genes. The dissection of QTL-Fhb2 using flanking marker sequences, integrating metabolomic and transcriptomic datasets, identified 4-Coumarate: CoA ligase (4CL, callose synthase (CS, basic Helix Loop Helix (bHLH041 transcription factor, glutathione S-transferase (GST, ABC transporter-4 (ABC4 and cinnamyl alcohol dehydrogenase (CAD as putative resistance genes localized within the QTL-Fhb2 region.Some of the identified genes within the QTL region are associated with structural resistance through cell wall reinforcement, reducing the spread of pathogen through rachis within a spike and few other genes that detoxify DON, the virulence factor, thus eventually reducing disease severity. In conclusion, we report that the wheat

  3. Study the Stability of SSR Repeats of pEA29 Plasmid of the Casual Agent of Fire Blight

    S. Baghaee Ravari

    2016-02-01

    Full Text Available Introduction Fire blight disease causes by Erwinia amylovora infects a wide variety of rosaceous plants. It was first recorded from pear trees in Karaj in year 1990. After that it was observed in many pear and apple orchards of the country. E. amylovora isolates differed slightly in virulence, symptoms and host range which ca be related to different plasmid content. The presence of an universal plasmid, pEA29, has been observed in majority of E. amylovora strains. Short-sequence DNA repeat with eight nt were repeated 3 to 15 times in the PstI fragment of the pEA29 plasmid. Here, the stability of SSR units and efficiency of this method to categorize strains was checked. For this reseaon two methods including amplification and cloning of whole and part of PstI fragment was done and the sequences were compared to eachother. In addition stability was evaluated based on three treatments including long time propagation, keeping strains in cold situation and re-isolation of infected tissues. Materials and Methods In this study 20 strains were purchased from the Iranian Plant Protection Research Institute. Their typical phenotypic tests were examined for all strains. All of then were checked with lateral flow immune chromatography in different serial dilutions. The pathogenicity were aassayed using complete fruit. Direct PCR with A/B primers and nested PCR with AJ75/AJ76 were applied for studied strains. Ten representative strains were selected snf part of PstI fragment amplified using RS1/RS2 primers. The PCR products were purified by QIAquick PCR purification kit (Qiagen, USA, cloned in pGEM-T and were sequenced (Macrogen Inc., Korea. Five of 10 were chosen for stability tests including long time propagation and sub culturing each two week for three months, keeping strains in refrigerator for three months and re-isolation of infected tissues. Results and Discussion In phenotypic tests all studies strains were facultative anaerobic growth, oxidase

  4. Palisade Russet: A late blight resistant potato cultivar having a low incidence of sugar ends and high specific gravity

    Palisade Russet is a medium-late maturing, lightly russeted potato breeding clone notable for its resistance to late blight (Phytophthora infestans) infection of foliage and tuber. Palisade Russet is suitable for processing with low tuber glucose concentrations observed following long-term storage ...

  5. Reduction in bacterial ooze formation on immature fruitlets after preventive treatments of Fosethyl-Al against fire blight Erwinia amylovora.

    Deckers, T; Schoofs, H; Verjans, W; De Maeyer, L

    2010-01-01

    Fire blight, caused by the bacterium Erwinia amylovora (Burill Winslow et al.), is a very important bacterial disease on apple and pear orchards with devastating effects in some production area and in some years. Fire blight control consists in a whole strategy of measures that should start with control measures in and around the fruit tree nurseries. Only the use of Vacciplant (Laminarin), an inducer of the self-defence mechanism, is registered in Belgium since 2009. In other European countries Fosethyl-Al has been registered for fire blight control. Recently, research trials have been done at Pcfruit research station for several years on the activity of ALiette (fosethyl-Al) against fire blight. Fosethyl-Al, also a plant defence enhancing molecule, applied preventively 3 times at a dose of 3.75 kg/ha standard orchard (3 x 3000 g a.i./ha standard orchard), showed a reduction in the host susceptibility and decreased the disease development on artificial inoculated flower clusters and shoots. Also a clear reduction in the ooze droplet formation on artificially inoculated immature fruitlets has been observed with this molecule. This reduction in the bacterial ooze formation is considered as a very important factor in the spread of the disease in the orchard.

  6. Regional spore dispersal as a factor in disease risk warnings for potato late blight: a proof of concept

    Kessel, G.J.T.; Skelsey, P.; Holtslag, A.A.M.; Moene, A.F.; Werf, van der W.

    2009-01-01

    This study develops and tests novel approaches that significantly reduce the fungicide input necessary for potato late blight control while maintaining the required high level of disease control. The central premise is that fungicide inputs can be reduced by reducing dose rates on more resistant

  7. Regional spore dispersal as a factor in disease risk warnings for potato late blight: A proof of concept

    Skelsey, P.; Kessel, G.J.T.; Holtslag, A.A.M.; Moene, A.F.; Werf, van der W.

    2009-01-01

    This study develops and tests a novel approach for including regional risk factors in operational disease risk warnings against potato late blight. The central premise is that fungicide inputs can be reduced by omitting applications on days when conditions are unsuitable for the atmospheric

  8. Regional spore dispersal as a factor in disease risk warnings for potato late blight : A proof of concept

    Skelsey, P.; Kessel, G. J. T.; Holtslag, A. A. M.; Moene, A. F.; van der Werf, W.

    2009-01-01

    This study develops and tests a novel approach for including regional risk factors in operational disease risk warnings against potato late blight. The central premise is that fungicide inputs can be reduced by omitting applications on days when conditions are unsuitable for the atmospheric

  9. First report of boxwood blight caused by Calonectria pseudonaviculata in Delaware, Maryland, New Jersey and New York

    Boxwood (Buxus spp.) are commercially important evergreen ornamental plants with an annual market value of over $103 million in the United States. The recent U.S. incursion of boxwood blight disease caused by the fungus Calonectria pseudonaviculata (syn. Cylindrocladium pseudonaviculatum, Cy. buxico...

  10. Resistant and susceptible responses in alfalfa (Medicago sativa) to bacterial stem blight caused by Pseudomonas syringae pv. syringae

    Bacterial stem blight caused by Pseudomonas syringae pv. syringae is a common disease of alfalfa (Medicago sativa L.) in the central and western U.S. and has been reported in Australia and Europe. The disease is not always recognized because symptoms are often associated with frost damage. Two culti...

  11. Control of seedling blight in winter wheat by seed treatments - impact on emergence, crop stand, yield and deoxynivalenol

    Jørgensen, Lise N; K. Nielsen, Linda; Nielsen, Bent J

    2012-01-01

    germination by approximately 100%, which led to an improved crop stand and yield increases in the range of 1.2–1.5 tonnes ha−1. Attacks of Fusarium head blight were relatively slight in the two trials and the content of deoxynivalenol was below the EU limits of 1250 ppb in the harvested grain. Even so, seed...

  12. Discovering novel Alternaria solani succinate dehydrogenase inhibitors by in silico modeling and virtual screening strategies to combat early blight

    Iftikhar, Sehrish; Shahid, Ahmad A.; Halim, Sobia A.; Wolters, Pieter J.; Vleeshouwers, Vivianne G.A.A.; Khan, Ajmal; Al-Harrasi, Ahmed; Ahmad, Shahbaz

    2017-01-01

    Alternaria blight is an important foliage disease caused by Alternaria solani. The enzyme Succinate dehydrogenase (SDH) is a potential drug target because of its role in tricarboxylic acid cycle. Hence targeting Alternaria solani SDH enzyme could be efficient tool to design novel fungicides against

  13. A simple culture method inducing sexual reproduction by Fusarium graminearum, the primary causal agent of Fusarium head blight

    The homothallic ascomycete fungus Fusarium graminearum is the primary causal agent of Fusarium head blight (FHB), a devastating disease of wheat and barley worldwide. The fungus undergoes both asexual and sexual stages in its life cycle. The asexual stage produces conidiospores, whereas the sexual s...

  14. An arabinobio-hydrolase (Arb93B) from Fusarium graminearum is associated with wheat head blight disease

    Fusarium head blight (FHB), caused by the fungus Fusarium graminearum, is one of the most important diseases of wheat and barley worldwide. FHB not only reduces crop yield, but the fungus also contaminates grains with mycotoxins, which are harmful to humans and animals. A previous study demonstrated...

  15. Mummy Berry Fruit Rot and Shoot Blight Incidence in Blueberry: Prediction, Ranking, and Stability in a Long-term Study

    Mummy berry is an important disease of cultivated blueberry. The disease has two distinct phases; a blighting phase initiated by ascospores and a fruit infection stage initiated by conidia. In this study we investigated blueberry cultivar resistance to both phases of the disease and, utilizing ‘stan...

  16. Rainfall thresholds as support for timing fungicide applications in the control of potato late blight in Ecuador and Peru

    Kromann, Peter; Taipe, Arturo; Perez, Willmer G.

    2009-01-01

    Accumulated rainfall thresholds were studied in seven field experiments conducted in Ecuador and Peru for their value in timing applications of fungicide to control potato late blight, caused by Phytophthora infestans. Fungicide regimes based on accumulated rainfall thresholds ranging from 10 to 70...

  17. Molecular cytogenetic characterization of alien introgressions with gene Fhb3 for resistance to Fusarium head blight disease of wheat

    Fusarium head blight (FHB) resistance was identified in the alien species Leymus racemosus, and wheat-Leymus introgression lines with FHB resistance were reported previously. Detailed molecular cytogenetic analysis of alien introgressions T01, T09, and T14 and the mapping of Fhb3, a new gene for FHB...

  18. Bacterial blight (Pseudomonas pisi Sackett) of peas in South Africa, with special reference to frost as a predisposing factor

    Boelema, B.H.

    1972-01-01

    In the beginning of the nineteen fifties bacterial blight caused much damage to pea crops in South Africa, particularly to those grown for seed production. A study has been made of the causal organism and the conditioning factors of the disease, special attention being paid to frost as a

  19. Citywide cluster randomized trial to restore blighted vacant land and its effects on violence, crime, and fear

    Charles C. Branas; Eugenia South; Michelle C. Kondo; Bernadette C. Hohl; Philippe Bourgois; Douglas J. Wiebe; John M. MacDonald

    2018-01-01

    Vacant and blighted urban land is a widespread and potentially risky environmental condition encountered by millions of people on a daily basis. About 15% of the land in US cities is deemed vacant or abandoned, an area roughly the size of Switzerland. In a citywide cluster randomized controlled trial, we investigated the effects of standardized, reproducible...

  20. Efficacy of fungicide combinations, phosphoric acid, and plant extract from stinging nettle on potato late blight management and tuber yield

    Late blight, caused by Phytophthora infestans is a major constraint to potato production. Inadequate management of the disease has often resulted in heavy losses in various production regions. We assessed the efficacy of fungicides, phosphoric acid, and stinging nettle plant extract combinations for...

  1. Phytophthora betacei, a new species within Phytophthora clade 1c causing late blight on Solanum betaceum in Colombia

    Mideros, M.F.; Turissini, D.A.; Guayazán, N.; Ibarra-Avila, H.; Danies, G.; Cárdenas, M.; Myers, K.; Tabima, J.; Goss, E.M.; Bernal, A.; Lagos, L.E.; Grajales, A.; Gonzalez, L.N.; Cooke, D.E.L.; Fry, W.E.; Grünwald, N.; Matute, D.R.; Restrepo, S.

    2018-01-01

    Over the past few years, symptoms akin to late blight disease have been reported on a variety of crop plants in South America. Despite the economic importance of these crops, the causal agents of the diseases belonging to the genus Phytophthora have not been completely characterized. In this study,

  2. Characterization of Triticum aestivum Abscisic Acid Receptors and a Possible Role for These in Mediating Fusairum Head Blight Susceptibility in Wheat

    Gordon, Cameron S.; Rajagopalan, Nandhakishore; Risseeuw, Eddy P.; Surpin, Marci; Ball, Fraser J.; Barber, Carla J.; Buhrow, Leann M.; Clark, Shawn M.; Page, Jonathan E.; Todd, Chris D.; Abrams, Suzanne R.; Loewen, Michele C.

    2016-01-01

    Abscisic acid (ABA) is a well-characterized plant hormone, known to mediate developmental aspects as well as both abiotic and biotic stress responses. Notably, the exogenous application of ABA has recently been shown to increase susceptibility to the fungal pathogen Fusarium graminearum, the causative agent of Fusarium head blight (FHB) in wheat and other cereals. However roles and mechanisms associated with ABA’s modulation of pathogen responses remain enigmatic. Here the identification of putative ABA receptors from available genomic databases for Triticum aestivum (bread wheat) and Brachypodium distachyon (a model cereal) are reported. A number of these were cloned for recombinant expression and their functionality as ABA receptors confirmed by in vitro assays against protein phosphatases Type 2Cs. Ligand selectivity profiling of one of the wheat receptors (Ta_PYL2DS_FL) highlighted unique activities compared to Arabidopsis AtPYL5. Mutagenic analysis showed Ta_PYL2DS_FL amino acid D180 as being a critical contributor to this selectivity. Subsequently, a virus induced gene silencing (VIGS) approach was used to knockdown wheat Ta_PYL4AS_A (and similar) in planta, yielding plants with increased early stage resistance to FHB progression and decreased mycotoxin accumulation. Together these results confirm the existence of a family of ABA receptors in wheat and Brachypodium and present insight into factors modulating receptor function at the molecular level. That knockdown of Ta_PYL4AS_A (and similar) leads to early stage FHB resistance highlights novel targets for investigation in the future development of disease resistant crops. PMID:27755583

  3. Some new and noteworthy diseases of poplars in India. [Botryodiplodia sett-rot; Alternaria tip blight; Cladosporium leaf spot; Fusarium pink incrustation

    Singh, S.

    1983-09-01

    Four new diseases of poplars namely Botryodiplodia sett-rott, Alternaria tip blight, Cladosporium leaf spot and Fusarium pink incrustation are described in this paper. Botryodiplodia palmarum causes sett-rott of poplars both at pre-sprouting and post-sprouting stage. The pathogen also causes mortality of poplar plants in the field within 4-6 weeks after planting. Alternaria stage of Pleuspora infectoria has been found as the cause of blackening and dying of growing tips and young leaves of a Populus sp. and P. deltoides in nurseries. Cladosporium humile has been recorded as the cause of brown spot followed by crumpling and premature shedding of leaves in P. ciliata, P. nigra and P. alba. The cause of Fusarium incrustation disease on P. cilata has been identified as Fusarium sp. of Gibbosum group. Pathogenicity of Botryodiplodia palmarum and Alternaria stage of Pleospora infectoria was confirmed by artificial inoculations. Brief descriptions of Alternaria, Cladosporium and Fusarium are also given. The paper also gives a short account of some noteworthy diseases recorded on poplars namely Ganoderma root rot, foliage ruts and stem cankers. Ganoderma root-rot is found to reach alarming proportions in closely spaced poplar plantations. Melampsora ciliata, an indigenous rust, is found to attack mainly clones of P. deltoides, P. yunnanensis, P. trichocarpa, P. alba and some cultivars of P. x euramericana in nurseries. A brief account of three types of stem cankers i.e. cankers due to pink disease fungus, Corticium salmonicolor, sun-scaled cankers and cankers associated with slime flux on various clones of P. deltoides is also given.

  4. Molecular Plant Pathology: Develop tools and resources for crop protection

    Currently, rice blast disease and sheath blight disease are the two major destructive fungal diseases worldwide. Both diseases are controlled by precise deployment of major and minor genes integrated with effective cultural practices worldwide. Continued evolution and adaptation of the pathogen hav...

  5. High-resolution mapping of Rsn1, a locus controlling sensitivity of rice to a necrosis-inducing phytotoxin from Rhizoctonia solani AG1-IA

    Rhizoctonia solani is a necrotrophic fungal pathogen that causes disease on all major crop-plant species. Anastomosis group 1-IA is the causal agent of sheath blight of rice (Oryza sativa), one of the most important rice diseases worldwide. R. solani AG-IA produces a necrosis-inducing phytotoxin a...

  6. The Tubular Sheaths Encasing Methanosaeta and Methanospirillum Filaments are Functional Amyloids

    Dueholm, Morten Simonsen; Larsen, Poul; Nielsen, Per Halkjær

    Archaea are well-recognized for their ability to thrive in extreme environments, although they can be found in virtually all habitats. Their adaptive success is linked to their unique cell envelopes, which often display extremely resistant to chemical and thermal denaturation and resist proteolysis...... techniques to show that the extracellular cell wall sheaths of the methanogenic archaea Methanosaeta and Methanospirillum are functional amyloid structures. Depolymerization of sheaths with formic acid and reducing agents and subsequent MS/MS analysis revealed that the sheaths are composed of a single major...... sheath protein (MspA). The amyloidogenic nature of MspA was confirmed by in vitro amyloid formation of recombinant MspA under a wide range of environmental conditions. This is the first report of a functional amyloid from the archaeal domain of life. The amyloid properties explain the extreme resistance...

  7. Effects of Fast-Ion Injection on a Magnetized Sheath near a Floating Wall

    Li Jiajia; Hu Zhanghu; Song Yuanhong; Wang Younian

    2013-01-01

    A fully kinetic particle-in-cell/Monte Carlo model is employed to self-consistently study the effects of fast-ion injection on sheath potential and electric field profile in collisional magnetized plasma with a floating absorbing wall. The influences of the fast-ion injection velocity and density, the magnetic field and angle θ 0 formed by the magnetic field and the x-axis on the sheath potential and electric field are discussed in detail. Numerical results show that increasing fast-ion injection density or decreasing injection velocity can enhance the potential drop and electric field in the sheath. Also, increasing the magnetic field strength can weaken the loss of charged particles to the wall and thus decrease the potential and electric field in the sheath. The time evolution of ion flux and velocity distribution on the wall is found to be significantly affected by the magnetic field.

  8. The endomembrane sheath: a key structure for understanding the plant cell?

    Reuzeau, C.; McNally, J. G.; Pickard, B. G.

    1997-01-01

    Recent evidence suggests that integrin is abundant in endomembranes of plant cells, and the endomembranes are clad by a sheath of cytoskeleton including F-actin. A role for endomembrane integrin and the endomembrane sheath is proposed: this system might orchestrate metabolic regulation by providing and modulating loci for channelling, and might accelerate channeling as needed by dragging the endoplasmic reticulum (ER) and organelles through the cytoplasm. To accomplish this "streaming", F-actin might lever against the rest of the endomembrane sheath and the ER might also lever against adhesion sites (i.e., plasmodesmata and plasmalemmal control centers). As an important agent in the control of cellular activities, according to this model, the endomembrane sheath would play a major part in responses to diverse signals and stresses, and under extreme stress cell survival would depend on the ability of the system to maintain enough integrity to direct critical syntheses and degradations.

  9. Comparison of a fuel sheath failure model with published experimental data

    Varty, R.L.; Rosinger, H.E.

    1982-01-01

    A fuel sheath failure model has been compared with the published results of experiments in which a Zircaloy-4 fuel sheath was subjected to a temperature ramp and a differential pressure until failure occurred. The model assumes that the deformation of the sheath is controlled by steady-state creep and that there is a relationship between tangential stress and temperature at the instant of failure. The sheath failure model predictions agree reasonably well with the experimental data. The burst temperature is slightly overpredicted by the model. The burst strain is overpredicted for small experimental burst strains but is underpredicted otherwise. The reasons for these trends are discussed and the extremely wide variation in burst strain reported in the literature is explained using the model

  10. Effects of Reentry Plasma Sheath on GPS Patch Antenna Polarization Property

    L. Zhao

    2013-01-01

    Full Text Available A plasma sheath enveloping a reentry vehicle would affect performances of on-board antenna greatly, especially the navigation antennas. This paper studies the effects of reentry plasma sheath on a GPS right-hand circularly polarized (RHCP patch antenna polarization property during a typical reentry process. Utilizing the algorithm of finite integration technique, the polarization characteristic of a GPS antenna coated by a plasma sheath is obtained. Results show that the GPS RHCP patch antenna radiation pattern distortions as well as polarization deteriorations exist during the entire reentry process, and the worst polarization mismatch loss between a GPS antenna and RHCP GPS signal is nearly 3 dB. This paper also indicates that measures should be taken to alleviate the plasma sheath for maintaining the GPS communication during the reentry process.

  11. Influence of plasma density and plasma sheath dynamics on the ion implantation by plasma immersion technique

    Ensinger, Wolfgang

    1996-01-01

    Influence of plasma density and plasma sheath dynamics on the ion implantation by plasma immersion technique / B. Rauschenbach ... - In: Nuclear instruments and methods in physics research. B. 113. 1996. S. 266-269

  12. Experimental Studies of Anode Sheath Phenomena in a Hall Thruster Discharge

    Dorf, L.; Raitses, Y.; Fisch, N.J.

    2004-01-01

    Both electron-repelling and electron-attracting anode sheaths in a Hall thruster were characterized by measuring the plasma potential with biased and emissive probes [L. Dorf, Y. Raitses, V. Semenov, and N.J. Fisch, Appl. Phys. Let. 84 (2004) 1070]. In the present work, two-dimensional structures of the plasma potential, electron temperature, and plasma density in the near-anode region of a Hall thruster with clean and dielectrically coated anodes are identified. Possible mechanisms of anode sheath formation in a Hall thruster are analyzed. The path for current closure to the anode appears to be the determining factor in the anode sheath formation process. The main conclusion of this work is that the anode sheath formation in Hall thrusters differs essentially from that in the other gas discharge devices, like a glow discharge or a hollow anode, because the Hall thruster utilizes long electron residence times to ionize rather than high neutral pressures

  13. Benign Peripheral Nerve Sheath Tumor in a Wild Toco Toucan ( Ramphastos toco ).

    Carvalho, Marcelo P N; Fernandes, Natalia C C A; Nemer, Viviane C; Neto, Ramiro N Dias; Teixeira, Rodrigo H F; Miranda, Bruna S; Mamprim, Maria J; Catão-Dias, José L; Réssio, Rodrigo A

    2016-09-01

    Peripheral nerve sheath tumors are a heterogeneous group of neoplasms that comprise neurofibromas, schwannomas, neurilemmomas, and perineuromas. In animals, peripheral nerve sheath neoplasms are most commonly diagnosed in dogs and cattle, followed by horses, goats, and cats, but their occurrence is uncommon in birds. An adult, free-living, male toco (common) toucan ( Ramphastos toco ) was admitted to the zoo animal clinic with weight loss, dehydration, and presence of a soft nodule adhered to the medial portion of the left pectoral muscle. Clinical, cytologic, and computed tomography scan results were indicative of a neoplasm. The toucan died during surgical resection of the mass. Necropsy, histopathologic, and immunohistochemical findings confirmed the diagnosis of benign peripheral nerve sheath tumor. To our knowledge, benign peripheral nerve sheath tumor has not previously been reported in a toucan or any other species in the order Piciformes.

  14. Child-Langmuir law for cathode sheath of glow discharge in CO2

    Lisovskiy, V.A.; Krol, H.H.; Osmayev, R.O.; Yegorenkov, V.D.

    2016-01-01

    This work is devoted to the determination of the law that may be applicable to the description of the cathode sheath in CO 2 . To this end three versions of the Child-Langmuir law have been considered - a collision free one (for the ions moving through a cathode sheath without collisions with gas molecules) as well as two collision- related versions - one for a constant mean free path of positive ions and one for a constant mobility of positive ions. The current-voltage characteristics and the cathode sheath thickness of the glow discharge in CO 2 have been simultaneously measured in the pressure range from 0.05 to 1 Torr and with the discharge current values up to 80 mA. In the whole range of the discharge conditions we have studied the cathode sheath characteristics are found to obey correctly only to the Child-Langmuir law version with a constant ion mobility.

  15. ICME-driven sheath regions deplete the outer radiation belt electrons

    Hietala, H.; Kilpua, E. K.; Turner, D. L.

    2013-12-01

    It is an outstanding question in space weather and solar wind-magnetosphere interaction studies, why some storms result in an increase of the outer radiation belt electron fluxes, while others deplete them or produce no change. One approach to this problem is to look at differences in the storm drivers. Traditionally drivers have been classified to Stream Interaction Regions (SIRs) and Interplanetary Coronal Mass Ejections (ICMEs). However, an 'ICME event' is a complex structure: The core is a magnetic cloud (MC; a clear flux rope structure). If the mass ejection is fast enough, it can drive a shock in front of it. This leads to the formation of a sheath region between the interplanetary shock and the leading edge of the MC. While both the sheath and the MC feature elevated solar wind speed, their other properties are very different. For instance, the sheath region has typically a much higher dynamic pressure than the magnetic cloud. Moreover, the sheath region has a high power in magnetic field and dynamic pressure Ultra Low Frequency (ULF) range fluctuations, while the MC is characterised by an extremely smooth magnetic field. Magnetic clouds have been recognised as important drivers magnetospheric activity since they can comprise long periods of very large southward Interplanetary Magnetic Field (IMF). Nevertheless, previous studies have shown that sheath regions can also act as storm drivers. In this study, we analyse the effects of ICME-driven sheath regions on the relativistic electron fluxes observed by GOES satellites on the geostationary orbit. We perform a superposed epoch analysis of 31 sheath regions from solar cycle 23. Our results show that the sheaths cause an approximately one order of magnitude decrease in the 24h-averaged electron fluxes. Typically the fluxes also stay below the pre-event level for more than two days. Further analysis reveals that the decrease does not depend on, e.g., whether the sheath interval contains predominantly northward

  16. MRI of intraspinal nerve sheath tumours presenting with sciatica

    Loke, T.K.L.; Chan, C.S.; Ma, H.T.G.; Ward, S.C.; Metreweli, C.

    1995-01-01

    The magnetic resonance imaging (MRI) characteristics of 14 intraspinal nerve sheath tumours (NST) presenting with sciatica were reviewed. The group comprised seven schwannomas, six neurofibromas and one perineuroma. The tumours were either iso- or hypointense with respect to spinal cord on T1-weighted (T1W) images; almost all tumours were hyperintense compared with spinal cord on T2-weighted (T2W) images. The tumours were all detectable on unenhanced T1 W images. Nine NST were scanned following Gadolinium-Diethylenetriamine penta acetic acid (DTPA) injection and all showed intense enhancement. This aids differentiation from sequestrated disc fragments. Tumours were more likely to show homogeneous enhancement unless they were recurrent tumours. Rim enhancement occurs more commonly in schwannomas and this can be used to differentiate these from neurofibromas. It is estimated that on unenhanced images, schwannomas cannot be distinguished from neurofibromas. Four tumours occurred at T1 1-T12. There was poor correlation of the site of the lesion with the clinical findings. It is recommended that the MRI studies in patients with sciatica should include the lower thoracic region especially if no protruded disc was found in the lumbar region. 15 refs., 4 figs

  17. MRI of intraspinal nerve sheath tumours presenting with sciatica

    Loke, T.K.L.; Chan, C.S. [United Christian Hospital (Hong Kong). Dept. of Diagnostic Radiology; Ma, H.T.G. [St Teresa`s Hospital, Kowloon (Hong Kong). MRI and CT scanning Dept.; Ward, S.C.; Metreweli, C. [Prince of wales Hospital, New Territories (Hong Kong). Dept. of Diagnostic Radiology

    1995-08-01

    The magnetic resonance imaging (MRI) characteristics of 14 intraspinal nerve sheath tumours (NST) presenting with sciatica were reviewed. The group comprised seven schwannomas, six neurofibromas and one perineuroma. The tumours were either iso- or hypointense with respect to spinal cord on T1-weighted (T1W) images; almost all tumours were hyperintense compared with spinal cord on T2-weighted (T2W) images. The tumours were all detectable on unenhanced T1 W images. Nine NST were scanned following Gadolinium-Diethylenetriamine penta acetic acid (DTPA) injection and all showed intense enhancement. This aids differentiation from sequestrated disc fragments. Tumours were more likely to show homogeneous enhancement unless they were recurrent tumours. Rim enhancement occurs more commonly in schwannomas and this can be used to differentiate these from neurofibromas. It is estimated that on unenhanced images, schwannomas cannot be distinguished from neurofibromas. Four tumours occurred at T1 1-T12. There was poor correlation of the site of the lesion with the clinical findings. It is recommended that the MRI studies in patients with sciatica should include the lower thoracic region especially if no protruded disc was found in the lumbar region. 15 refs., 4 figs.

  18. Reflection of ion acoustic waves by the plasma sheath

    Ibrahim, I.; Kuehl, H.H.

    1984-01-01

    The reflection coefficient R for linear monochromatic ion acoustic waves incident on the transonic layer and sheath from the plasma interior is calculated. The treatment differs from previous analyses in that (1) the exact zero-order ion density and velocity profiles for a planar, bounded plasma are used, and the zero-order charge separation is not neglected, and (2) the first-order quantities near the transonic layer are considered in detail, including first-order charge separation, whereby it is found that no coupling to the beam modes exists, and that the functional form of the first-order solution is completely determined. It is shown that the upper bound for Vertical BarRVertical Bar is (1)/(3) . The largest reflection occurs for frequencies which are small compared with the ionization frequency, and generally decreases with increasing frequency. By Fourier superposition, the reflection of a pulse is computed. For a narrow incident pulse, the reflected pulse is greatly distorted and is small compared with the incident pulse. For a broad pulse, the reflected pulse is similar in shape to the incident pulse, and has a magnitude which is approximately (1)/(3) of the incident pulse

  19. Improvements in the weldability of a superconductor sheath material

    Summers, L.T.; Morris, J.W. Jr.

    1985-01-01

    This paper investigates the effects of chemistry and heat treatment variation on the 4-K tensile properties of A-286, a candidate sheath material for force-cooled superconductors. Currently, full use of A-286 and similar superalloys is limited by the observed low yield and ultimate tensile strengths in the welded and aged condition. The low strength is shown to be associated with the formation of precipitate-free zones as a result of alloying-element segregation during weld pool solidification. It has been determined that minor modifications of the weld-metal chemistry by the addition of Ti reduce precipitate-free-zone formation, resulting in matching weld-metal and base-plate strengths at 4 K. Furthermore, nucleation of the γ' hardening phase has been found to be a strong function of temperature and composition. Modified heat-treatment schedules have been determined that are amenable to superconductor fabrication and that resulted in increased weld hardening and improved 4-K tensile properties

  20. Sperm protein 17 is expressed in the sperm fibrous sheath

    Albani Elena

    2009-07-01

    Full Text Available Abstract Background Sperm protein 17 (Sp17 is a highly conserved mammalian protein characterized in rabbit, mouse, monkey, baboon, macaque, human testis and spermatozoa. mRNA encoding Sp17 has been detected in a range of murine and human somatic tissues. It was also recognized in two myeloma cell lines and in neoplastic cells from patients with multiple myeloma and ovarian carcinoma. These data all indicate that Sp17 is widely distributed in humans, expressed not only in germinal cells and in a variety of somatic tissues, but also in neoplastic cells of unrelated origin. Methods Sp17 expression was analyzed by immunocytochemistry and transmission electron microscopy on spermatozoa. Results Here, we demonstrate the ultrastructural localization of human Sp17 throughout the spermatozoa flagellar fibrous sheath, and its presence in spermatozoa during in vitro states from their ejaculation to the oocyte fertilization. Conclusion These findings suggest a possible role of Sp17 in regulating sperm maturation, capacitation, acrosomal reaction and interactions with the oocyte zona pellucida during the fertilization process. Further, the high degree of sequence conservation throughout its N-terminal half, and the presence of an A-kinase anchoring protein (AKAP-binding motif within this region, suggest that Sp17 might play a regulatory role in a protein kinase A-independent AKAP complex in both germinal and somatic cells.