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Sample records for self-organized porphyrinic materials

  1. Self-organization of porphyrin units induced by magnetic field during sol-gel polymerization.

    Science.gov (United States)

    Lerouge, Frédéric; Cerveau, Geneviève; Corriu, Robert J P; Stern, Christine; Guilard, Roger

    2007-04-21

    The use of a magnetic field as a controlling factor during the hydrolysis-polycondensation of porphyrin precursors substituted by Si(OR)(3) groups, induces a self-organization of porphyrin moieties due to the stacking of these units in the hybrid material and this study also confirms the effect of the magnetic field in the nano- and micrometric organization during the kinetically controlled polycondensation process.

  2. Self-organization in irradiated materials

    International Nuclear Information System (INIS)

    Gerasimenko, N.N.; Dzhamanbalin, K.K.; Medetov, N.A.

    2003-01-01

    Full text: By the present time a great deal of experimental material concerning self-organization in irradiated materials is stored. It means that in different materials (single crystal and amorphous semiconductor, metals, polymers) during one process of irradiation with accelerated particles or energetic quanta the structure previously disordered can be reordered to the previous or different order. These processes are considered separately from the processes of radiation-stimulated ordering when the renewal of the structure occurs as the result of extra irradiation, sometimes accompanied with another influence (heating, lighting, application of mechanical tensions). The processes of reordering are divided into two basic classes: the reconstruction of crystalline structure (1) and the formation of space-ordered system (2). The processes of ordering are considered with the use of synergetic approach and are analyzed conformably to the concrete conditions of new order appearance process realization in order to reveal the self-organization factor's role. The concrete experimental results of investigating of the radiation ordering processes are analyzed for different materials: semiconductor, metals, inorganic dielectrics, polymers. The ordering processes are examined from the point of their possible use in the technology of creating nano-dimensional structures general and quantum-dimensional ones in particular

  3. Porphyrins

    Science.gov (United States)

    Gotelli, George R.; Wall, Jeffrey H.; Kabra, Pokar M.; Marton, Laurence J.

    Historically the term porphyria has been used since it was coined in 1871 to describe a purple colored material extracted from pathological feces (1). The first case of porphyria was reported in 1874, (2, 3), but until the 1930 Nobel Prize winning work of Hans Fischer on the synthesis of protoporphyrin, there was little more than academic interest in porphyrin analysis. During the forty years between 1930 and 1970, the biosynthetic pathways leading to the formation of heme, and the details of porphyrin metabolism, were elucidated. During this time quantitative methods for porphyrins in biological fluids used complex and laborious solvent extraction techniques, requiring large sample volumes and hours to complete. We now know that these methods only partially separated the complex mixture of porphyrins found in biological fluids. These solvent extraction procedures fractionated the porphyrins into two broad groups, uroporphyrins (octacarboxylic) and coproporphyrins (tetracarboxylic). However, intermediate carboxylated porphyrin containing 2, 3, 5, 6, and 7 carboxyl groups are now known to exist in normal and pathlogical excreta, which were not differentiated, but which were included in the two broad uroporphyrin and copropophyrin groups.

  4. Self-Organized Construction with Continuous Building Material

    DEFF Research Database (Denmark)

    Heinrich, Mary Katherine; Wahby, Mostafa; Divband Soorati, Mohammad

    2016-01-01

    Self-organized construction with continuous, structured building material, as opposed to modular units, offers new challenges to the robot-based construction process and lends the opportunity for increased flexibility in constructed artifact properties, such as shape and deformation. As an example...... investigation, we look at continuous filaments organized into braided structures, within the context of bio-hybrids constructing architectural artifacts. We report the result of an early swarm robot experiment. The robots successfully constructed a braid in a self-organized process. The construction process can...... be extended by using different materials and by embedding sensors during the self-organized construction directly into the braided structure. In future work, we plan to apply dedicated braiding robot hardware and to construct sophisticated 3-d structures with local variability in patterns of filament...

  5. Synthesis and self-organization of zinc β-(dialkoxyphosphoryl)porphyrins in the solid state and in solution.

    Science.gov (United States)

    Vinogradova, Ekaterina V; Enakieva, Yulia Y; Nefedov, Sergey E; Birin, Kirill P; Tsivadze, Aslan Y; Gorbunova, Yulia G; Bessmertnykh Lemeune, Alla G; Stern, Christine; Guilard, Roger

    2012-11-19

    The first synthesis and self-organization of zinc β-phosphorylporphyrins in the solid state and in solution are reported. β-Dialkoxyphosphoryl-5,10,15,20-tetraphenylporphyrins and their Zn(II) complexes have been synthesized in good yields by using Pd- and Cu-mediated carbon-phosphorous bond-forming reactions. The Cu-mediated reaction allowed to prepare the mono-β-(dialkoxyphosphoryl)porphyrins 1 Zn-3 Zn starting from the β-bromo-substituted zinc porphyrinate ZnTPPBr (TPP = tetraphenylporphyrin) and dialkyl phosphites HP(O)(OR)(2) (R = Et, iPr, nBu). The derivatives 1 Zn-3 Zn were obtained in good yields by using one to three equivalents of CuI. When the reaction was carried out in the presence of catalytic amounts of palladium complexes in toluene, the desired zinc derivative 1 Zn was obtained in up to 72% yield. The use of a Pd-catalyzed C-P bond-forming reaction was further extended to the synthesis of β-poly(dialkoxyphosphoryl)porphyrins. An unprecedented one-pot sequence involving consecutive reduction and phosphorylation of H(2)TPPBr(4) led to the formation of a mixture of the 2,12- and 2,13-bis(dialkoxy)phosphorylporphyrins 5 H(2) and 6 H(2) in 81% total yield. According to the X-ray diffraction studies, 1 Zn and 3 Zn are partially overlapped cofacial dimers formed through the coordination of two Zn centers by two phosphoryl groups belonging to the adjacent molecules. The equilibrium between the monomeric and the dimeric species exists in solutions of 1 Zn and 3 Zn in weakly polar solvents according to spectroscopic data (UV/Vis absorption and NMR spectroscopy). The ratio of each form is dependent on the concentration, temperature, and traces of water or methanol. These features demonstrated that zinc β-phosphorylporphyrins can be regarded as new model compounds for the weakly coupled chlorophyll pair in the photosynthesis process. Copyright © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  6. Multifunctional porphyrinic materials encapsulated into macronets with photo chemotherapeutic applications

    Energy Technology Data Exchange (ETDEWEB)

    Ion, R. -M.; Fierascu, R. -C.; Dimitriu, I. [Valahia University, Materials Science Department, Targoviste (Romania)

    2008-07-01

    Supramolecidar chemistry is expected to keep a high developing advanced of molecular devices based on multifunctional materials. Porphyrins and their analogues should play a significant role as a consequence of their catalytic, electrocatalytic, photochemical and photoelectrochemical properties. Such molecular materials contain a high porosity with large cavities and galleries that can be functionalization yielding to a desired chirality and structure. The functionalization implies inserting into macrocydic cavity, followed by auto-assembling as columnar aggregates. The obtained cavities are used as host for different molecular guests. H and J-aggregates of some porphyrins are based on the intermolecular interactions of 3-5 Kcal/mol per porphyrin face. The columnar structure formed by porphyrins has a length of 5 to 27 porphyrin unities. In this paper we focused on our own strategy based on coordination chemistry for the design and build-up of supermolecules and supra molecular structures constituted by a porphyrin (TSPPJ and a new and revolutionary method for stabilizing porphyrins (as organic part), by their incapsulation into supports with controlled porosity as macronets (as inorganic parts), obtaining some hybrids materials. Included are also their properties and potential applications. Key words: porphyrins, macronets, photochemotherapy.

  7. Porphyrin and fullerene-based artificial photosynthetic materials for photovoltaics

    International Nuclear Information System (INIS)

    Imahori, Hiroshi; Kashiwagi, Yukiyasu; Hasobe, Taku; Kimura, Makoto; Hanada, Takeshi; Nishimura, Yoshinobu; Yamazaki, Iwao; Araki, Yasuyuki; Ito, Osamu; Fukuzumi, Shunichi

    2004-01-01

    We have developed artificial photosynthetic systems in which porphyrins and fullerenes are self-assembled as building blocks into nanostructured molecular light-harvesting materials and photovoltaic devices. Multistep electron transfer strategy has been combined with our finding that porphyrin and fullerene systems have small reorganization energies, which are suitable for the construction of light energy conversion systems as well as artificial photosynthetic models. Highly efficient photosynthetic electron transfer reactions have been realized at ITO electrodes modified with self-assembled monolayers of porphyrin oligomers as well as porphyrin-fullerene linked systems. Porphyrin-modified gold nanoclusters have been found to have potential as artificial photosynthetic materials. These results provide basic information for the development of nanostructured artificial photosynthetic systems

  8. Self-Organization during Friction of Slide Bearing Antifriction Materials

    Directory of Open Access Journals (Sweden)

    Iosif S. Gershman

    2015-12-01

    Full Text Available This article discusses the peculiarities of self-organization behavior and formation of dissipative structures during friction of antifriction alloys for slide bearings against a steel counterbody. It shows that during self-organization, the moment of friction in a tribosystem may be decreasing with the load growth and in the bifurcations of the coefficient of friction with respect to load. Self-organization and the formation of dissipative structures lead to an increase in the seizure load.

  9. Modeling self-organization of novel organic materials

    Science.gov (United States)

    Sayar, Mehmet

    In this thesis, the structural organization of oligomeric multi-block molecules is analyzed by computational analysis of coarse-grained models. These molecules form nanostructures with different dimensionalities, and the nanostructured nature of these materials leads to novel structural properties at different length scales. Previously, a number of oligomeric triblock rodcoil molecules have been shown to self-organize into mushroom shaped noncentrosymmetric nanostructures. Interestingly, thin films of these molecules contain polar domains and a finite macroscopic polarization. However, the fully polarized state is not the equilibrium state. In the first chapter, by solving a model with dipolar and Ising-like short range interactions, we show that polar domains are stable in films composed of aggregates as opposed to isolated molecules. Unlike classical molecular systems, these nanoaggregates have large intralayer spacings (a ≈ 6 nm), leading to a reduction in the repulsive dipolar interactions that oppose polar order within layers. This enables the formation of a striped pattern with polar domains of alternating directions. The energies of the possible structures at zero temperature are computed exactly and results of Monte Carlo simulations are provided at non-zero temperatures. In the second chapter, the macroscopic polarization of such nanostructured films is analyzed in the presence of a short range surface interaction. The surface interaction leads to a periodic domain structure where the balance between the up and down domains is broken, and therefore films of finite thickness have a net macroscopic polarization. The polarization per unit volume is a function of film thickness and strength of the surface interaction. Finally, in chapter three, self-organization of organic molecules into a network of one dimensional objects is analyzed. Multi-block organic dendron rodcoil molecules were found to self-organize into supramolecular nanoribbons (threads) and

  10. Spectroscopy and photophysics of self-organized zinc porphyrin nanolayers. 1. Optical spectroscopy of excitonic interactions involving the soret band

    NARCIS (Netherlands)

    Donker, H.; Koehorst, R.B.M.; Schaafsma, T.J.

    2005-01-01

    The photophysical properties of excited singlet states of zinc tetra-(p-octylphenyl)-porphyrin in 5-25-nm-thick films spin-coated onto quartz slides have been investigated by optical spectroscopy. Analysis of the polarized absorption spectra using a dipole-dipole exciton model with two mutually

  11. Porphyrin doped vanadium pentoxide xerogel as electrode material

    Energy Technology Data Exchange (ETDEWEB)

    Anaissi, F.J.; Engelmann, F.M.; Araki, K.; Toma, H.E. [Sao Paulo Univ., SP (Brazil). Inst. de Quimica

    2003-04-01

    The lamellar composite material, VXG-TMPyP, obtained from the combination of cationic, water-soluble meso-(tetra-4-methyl-pyridinium)porphyrin (TMPyP) and vanadium pentoxide gel was investigated and employed as electrode modifying material. This material was isolated as a xerogel and characterized by X-ray diffraction, UV-Vis spectroscopy, cyclic voltammetry, spectro-electrochemistry and TG analysis. According to the X-ray diffraction data, the original VXG lamellar matrix framework is kept in the composite, evidencing a topotatic reaction. UV-Vis spectra indicated a strong interaction between VXG and TMPyP leading to the protonation of the porphyrin ring. In contrast with the vanadium oxide xerogel the new material is stable in water. The presence of the cationic porphyrin species in its structure turns it able to incorporate negatively charged ions, such as ferrocyanide and I{sup -}. The presence of the I{sub 2}/I{sup -} couple gives rise to a dramatic increase in the reversibility of the V{sup V/IV} process and in the charge capacity of the material. (authors)

  12. Magnetic Nanostructures Patterned by Self-Organized Materials

    Science.gov (United States)

    2016-01-05

    Palma , J. Escrig, J. C. Denardin Angular dependence of the coercivity and remanence of ordered arrays of Co nanowires Journal of...J. L. Palma , C. Gallardo, L. Spinu, J. M. Vargas, L. S. Dorneles, J. C. Denardin, J. Escrig, Magnetic properties of Fe20 Ni80 antidots: Pore size and...array disorder, Journal of Magnetism and Magnetic Materials., 344, 2013, 8-13 7. E. Vargas, P. Toro, J.L. Palma , J. Escrig, C. Chaneac,

  13. Mimosa Origami: A nanostructure-enabled directional self-organization regime of materials

    Science.gov (United States)

    Wong, William S. Y.; Li, Minfei; Nisbet, David R.; Craig, Vincent S. J.; Wang, Zuankai; Tricoli, Antonio

    2016-01-01

    One of the innate fundamentals of living systems is their ability to respond toward distinct stimuli by various self-organization behaviors. Despite extensive progress, the engineering of spontaneous motion in man-made inorganic materials still lacks the directionality and scale observed in nature. We report the directional self-organization of soft materials into three-dimensional geometries by the rapid propagation of a folding stimulus along a predetermined path. We engineer a unique Janus bilayer architecture with superior chemical and mechanical properties that enables the efficient transformation of surface energy into directional kinetic and elastic energies. This Janus bilayer can respond to pinpoint water stimuli by a rapid, several-centimeters-long self-assembly that is reminiscent of the Mimosa pudica’s leaflet folding. The Janus bilayers also shuttle water at flow rates up to two orders of magnitude higher than traditional wicking-based devices, reaching velocities of 8 cm/s and flow rates of 4.7 μl/s. This self-organization regime enables the ease of fabricating curved, bent, and split flexible channels with lengths greater than 10 cm, demonstrating immense potential for microfluidics, biosensors, and water purification applications. PMID:28861471

  14. Porphyrin Based Near Infrared-Absorbing Materials for Organic Photovoltaics

    Science.gov (United States)

    Zhong, Qiwen

    photosynthesis. Photosynthesis uses light from the sun to drive a series of chemical reactions. Most natural photosynthetic systems utilize chlorophylls to absorb light energy and carry out photochemical charge separation that stores energy in the form of chemical bonds. The sun produces a broad spectrum of light output that ranges from gamma rays to radio waves. The entire visible range of light (400-700 nm) and some wavelengths in the NIR (700-1000 nm), are highly active in driving photosynthesis. Although the most familiar chlorophyll-containing organisms, such as plants, algae and cyanobacteria, cannot use light longer than 700 nm, anoxygenic bacterium containing bacteriochlorophylls can use the NIR part of the solar spectrum. No organism is known to utilize light of wavelength longer than about 1000 nm for photosynthesis. NIR light has a very low-energy content in each photon, so that large numbers of these low-energy photons would have to be used to drive the chemical reactions of photosynthesis. This is thermodynamically possible but would require a fundamentally different molecular mechanism that is more akin to a heat engine than to photochemistry. Early work on developing light absorbing materials for OPVs was inspired by photosynthesis in which light is absorbed by chlorophyll. Structurally related to chlorophyll is the porphyrin family, which has accordingly drawn much interest as the potential light absorbing component in OPV applications. In this dissertation, the design and detail studies of several porphyrin-based NIR absorbing materials, including pi--extended perylenyl porphryins and pyrazole-containing carbaporphyrins, as well as porphyrin modified single-walled carbon nanotube hybrids, will be presented, dedicating efforts to develop novel and application-oriented materials for efficient utilization of sustainable solar energy.

  15. Self-organization of a tetrasubstituted tetrathiafulvalene (TTF) in a silica based hybrid organic-inorganic material.

    Science.gov (United States)

    Cerveau, Geneviève; Corriu, Robert J P; Lerouge, Frédéric; Bellec, Nathalie; Lorcy, Dominique; Nobili, Maurizio

    2004-02-21

    A hybrid organic inorganic nanostructured material containing a TTF core substituted by four arms exhibited a high level of both condensation at silicon (96%) and self-organization as evidenced by X-ray diffraction and an unprecedented birefringent behaviour.

  16. From self-organization to self-assembly: a new materialism?

    Science.gov (United States)

    Vincent, Bernadette Bensaude

    2016-09-01

    While self-organization has been an integral part of academic discussions about the distinctive features of living organisms, at least since Immanuel Kant's Critique of Judgement, the term 'self-assembly' has only been used for a few decades as it became a hot research topic with the emergence of nanotechnology. Could it be considered as an attempt at reducing vital organization to a sort of assembly line of molecules? Considering the context of research on self-assembly I argue that the shift of attention from self-organization to self-assembly does not really challenge the boundary between chemistry and biology. Self-assembly was first and foremost investigated in an engineering context as a strategy for manufacturing without human intervention and did not raise new perspectives on the emergence of vital organization itself. However self-assembly implies metaphysical assumptions that this paper tries to disentangle. It first describes the emergence of self-assembly as a research field in the context of materials science and nanotechnology. The second section outlines the metaphysical implications and will emphasize a sharp contrast between the ontology underlying two practices of self-assembly developed under the umbrella of synthetic biology. And unexpectedly, we shall see that chemists are less on the reductionist side than most synthetic biologists. Finally, the third section ventures some reflections on the kind of design involved in self-assembly practices.

  17. Unraveling atomic-level self-organization at the plasma-material interface

    Science.gov (United States)

    Allain, J. P.; Shetty, A.

    2017-07-01

    The intrinsic dynamic interactions at the plasma-material interface and critical role of irradiation-driven mechanisms at the atomic scale during exposure to energetic particles require a priori the use of in situ surface characterization techniques. Characterization of ‘active’ surfaces during modification at atomic-scale levels is becoming more important as advances in processing modalities are limited by an understanding of the behavior of these surfaces under realistic environmental conditions. Self-organization from exposure to non-equilibrium and thermalized plasmas enable dramatic control of surface morphology, topography, composition, chemistry and structure yielding the ability to tune material properties with an unprecedented level of control. Deciphering self-organization mechanisms of nanoscale morphology (e.g. nanodots, ripples) and composition on a variety of materials including: compound semiconductors, semiconductors, ceramics, polymers and polycrystalline metals via low-energy ion-beam assisted plasma irradiation are critical to manipulate functionality in nanostructured systems. By operating at ultra-low energies near the damage threshold, irradiation-driven defect engineering can be optimized and surface-driven mechanisms controlled. Tunability of optical, electronic, magnetic and bioactive properties is realized by reaching metastable phases controlled by atomic-scale irradiation-driven mechanisms elucidated by novel in situ diagnosis coupled to atomistic-level computational tools. Emphasis will be made on tailored surface modification from plasma-enhanced environments on particle-surface interactions and their subsequent modification of hard and soft matter interfaces. In this review, we examine current trends towards in situ and in operando surface and sub-surface characterization to unravel atomic-scale mechanisms at the plasma-material interface. This work will emphasize on recent advances in the field of plasma and ion

  18. Expanded porphyrins as third order non-linear optical materials ...

    Indian Academy of Sciences (India)

    WINTEC

    function correlations ... An understanding of the structure–function corre- lations of these expanded porphyrins is an important first step for ... where χ (2) and χ (3) are the quadratic χ (2) (first- order) and χ (3) cubic (second-order) susceptibilities.

  19. New porphyrin-polyoxometalate hybrid materials: synthesis, characterization and investigation of catalytic activity in acetylation reactions.

    Science.gov (United States)

    Araghi, Mehdi; Mirkhani, Valiollah; Moghadam, Majid; Tangestaninejad, Shahram; Mohammdpoor-Baltork, Iraj

    2012-10-14

    New hybrid complexes based on covalent interaction between 5,10,15,20-tetrakis(4-aminophenyl)porphyrinatozinc(II) and 5,10,15,20-tetrakis(4-aminophenyl)porphyrinatotin(IV) chloride, and a Lindqvist-type polyoxometalate, Mo(6)O(19)(2-), were prepared. These new porphyrin-polyoxometalate hybrid materials were characterized by (1)H NMR, FT IR and UV-Vis spectroscopic methods and cyclic voltammetry. These spectro- and electrochemical studies provided several spectral data for synthesis of these compounds. Cyclic voltammetry showed the influence of the polyoxometalate on the redox process of the porphyrin ring. The catalytic activity of tin(IV)porphyrin-hexamolybdate hybrid material was investigated in the acetylation of alcohols and phenols with acetic anhydride. The reusability of this catalyst was also investigated.

  20. Polystyrene nanofiber materials modified with an externally bound porphyrin photosensitizer

    Czech Academy of Sciences Publication Activity Database

    Henke, P.; Lang, Kamil; Kubát, Pavel; Sýkora, Jan; Šlouf, Miroslav; Mosinger, Jiří

    2013-01-01

    Roč. 5, č. 9 (2013), s. 3776-3783 ISSN 1944-8244 R&D Projects: GA ČR GAP208/10/1678; GA ČR GBP208/12/G016; GA ČR GA13-12496S Institutional support: RVO:61388980 ; RVO:61388955 ; RVO:61389013 Keywords : nanofiber * porphyrin * singlet oxygen * adsorption * photooxidation * antibacterial Subject RIV: CA - Inorganic Chemistry; CD - Macromolecular Chemistry (UMCH-V); CF - Physical ; Theoretical Chemistry (UFCH-W) Impact factor: 5.900, year: 2013

  1. Synthesis and characterization of a new porphyrin-polyoxometalate hybrid material and investigation of its catalytic activity.

    Science.gov (United States)

    Araghi, Mehdi; Mirkhani, Valiollah; Moghadam, Majid; Tangestaninejad, Shahram; Mohammdpoor-Baltork, Iraj

    2012-03-14

    In the present work, the preparation of a new organic-inorganic hybrid material in which tetrakis(p-aminophenylporphyrin) is covalently linked to a Lindqvist structure of polyoxometalate, is reported. This new porphyrin-polyoxometalate hybrid material was characterized by (1)H NMR, FT-IR and UV-Vis spectroscopic methods and cyclic voltammetry. These spectro- and electrochemical studies provided spectral data of the synthesis of this compound. Cyclic voltammetry showed the influence of the porphyrin on the redox process of the polyoxometalate. The catalytic activity of this hybrid material was investigated in the alkene epoxidation with NaIO(4).

  2. Effects of mechanical stimulating treatment on self-organization phenomena of materials; Kikaiteki reiki shori. Zairyo no jiko soshikia gensho ni oyobosu sono koka

    Energy Technology Data Exchange (ETDEWEB)

    Hida, M. [Okayama University, Okayama (Japan). Faculty of Mechanical Engineering

    1999-03-31

    The atoms and atom clusters around dislocation cores in crystals or surface layer deformed by mechanical energy are locally excited so as to give rise some chemical reactions and to self-organize their products into a kind of Spatial-Temporal Pattern Formation as a dissipative structure. A famous coupling phenomenon between mechanical and chemical process in solid materials must have been mechanical alloing. This report explains that various mechano-chemical treatments are powerfull method for entraining the solid system into non-equilibrium states and interesting phenomena stimulated by the mechanical self-catalysis reaction causing self-organization. (author)

  3. Soluble porphyrin polymers

    Science.gov (United States)

    Gust, Jr., John Devens; Liddell, Paul Anthony

    2015-07-07

    Porphyrin polymers of Structure 1, where n is an integer (e.g., 1, 2, 3, 4, 5, or greater) ##STR00001## are synthesized by the method shown in FIGS. 2A and 2B. The porphyrin polymers of Structure 1 are soluble in organic solvents such as 2-MeTHF and the like, and can be synthesized in bulk (i.e., in processes other than electropolymerization). These porphyrin polymers have long excited state lifetimes, making the material suitable as an organic semiconductor for organic electronic devices including transistors and memories, as well as solar cells, sensors, light-emitting devices, and other opto-electronic devices.

  4. Study of charge transfer processes in porphyrins- and phthalocyanins-based materials: from the liquid phase to the solid state

    International Nuclear Information System (INIS)

    Fournier, Thierry

    1994-01-01

    In order to efficiently conceive and build supramolecular materials for molecular electronics and optoelectronics, one need to have access to a large data base on the interactions between the elementary pieces of the material. Such a data base can be established only through the study of model Systems and model media. Oligomers of porphyrins and phthalocyanines constitute models of choice: due to the chemical versatility of the compounds, their physical and photophysical properties can be adjusted to produce a targeted function. The first part of this thesis is concerned with double- and triple-Decker mixed porphyrin and Phthalocyanines sandwich compounds of cerium. Then we study the photophysical properties of complexes formed by pairing in solution porphyrins and phthalocyanines bearing oppositely charged substituents. The charge transfer reactions and geminated recombinations are investigated by time-resolved absorption spectroscopy (from the femto- to millisecond time scales) for excited complexes either in solution, or confined in sol-gel matrices or in Langmuir-Blodgett films. The results obtained in the various media are compared and analysed by the Marcus theory. They allow to show that, for strongly coupled complexes, the solvent does not play any key role in the forward and backward electron transfer. We conclude this work by introducing a few targeted projects based on of the photophysical properties of these complexes, namely photodynamic therapy of cancers, nonlinear optics and the generation of photovoltage. (author) [fr

  5. Stepwise transformation of the molecular building blocks in a porphyrin-encapsulating metal-organic material

    KAUST Repository

    Zhang, ZhenJie

    2013-04-24

    When immersed in solutions containing Cu(II) cations, the microporous metal-organic material P11 ([Cd4(BPT)4]·[Cd(C 44H36N8)(S)]·[S], BPT = biphenyl-3,4′,5-tricarboxylate) undergoes a transformation of its [Cd 2(COO)6]2- molecular building blocks (MBBs) into novel tetranuclear [Cu4X2(COO)6(S) 2] MBBs to form P11-Cu. The transformation occurs in single-crystal to single-crystal fashion, and its stepwise mechanism was studied by varying the Cd2+/Cu2+ ratio of the solution in which crystals of P11 were immersed. P11-16/1 (Cd in framework retained, Cd in encapsulated porphyrins exchanged) and other intermediate phases were thereby isolated and structurally characterized. P11-16/1 and P11-Cu retain the microporosity of P11, and the relatively larger MBBs in P11-Cu permit a 20% unit cell expansion and afford a higher surface area and a larger pore size. © 2013 American Chemical Society.

  6. Fabrication of metallic nanomasks by transfer of self-organized nanodot patterns from semiconductor material into thin metallic layers

    International Nuclear Information System (INIS)

    Bobek, T.; Kurz, H.

    2007-01-01

    The basic understanding of the formation of highly regular nanostructures during ion erosion of amorphous GaSb layers is revised. The essential physical parameters for the formation of the highly regular dot pattern are discussed. Numerical modelling based on the stabilized isotropic Kuramoto-Sivashinsky equation is presented and discussed. The experimental part of this contribution presents the successful pattern transfer into metallic buried thin layers as well as into Silicon underlayers. The critical conditions for this transfer technique are discussed. Application potential of using this self-organization scheme for the generation of highly regular patterns in ferromagnetic metal layers as well as in crystalline silicon is estimated

  7. Self-organizing plasmas

    International Nuclear Information System (INIS)

    Hayashi, T.; Sato, T.

    1999-01-01

    The primary purpose of this paper is to extract a grand view of self-organization through an extensive computer simulation of plasmas. The assertion is made that self-organization is governed by three key processes, i.e. the existence of an open complex system, the existence of information (energy) sources and the existence of entropy generation and expulsion processes. We find that self-organization takes place in an intermittent fashion when energy is supplied continuously from outside. In contrast, when the system state is suddenly changed into a non-equilibrium state externally, the system evolves stepwise and reaches a minimum energy state. We also find that the entropy production rate is maximized whenever a new ordered structure is created and that if the entropy generated during the self-organizing process is expelled from the system, then the self-organized structure becomes more prominent and clear. (author)

  8. Trace Oxygen Sensitive Material Based on Two Porphyrin Derivatives in a Heterodimeric Complex

    Directory of Open Access Journals (Sweden)

    Eugenia Fagadar-Cosma

    2017-10-01

    Full Text Available The successful preparation of a novel dimer complex formed between 5,10,15,20-tetrakis(3,4-dimethoxyphenyl-porphyrin Fe(III chloride and (5,10,15,20-tetraphenylporphinato dichlorophosphorus(V chloride using the well-known reactivity of the P–X bond is reported. The obtained complex was characterized by UV-vis, Fourier transform infrared spectroscopy (FT-IR, fluorescence, 1H-NMR, 13C-NMR, and 31P-NMR spectroscopic techniques and also by additional Heteronuclear Single Quantum Coherence (HSQC and Heteronuclear Multiple Bond Correlation (HMBC experiments in order to correctly assign the NMR signals. Scanning electron microscopy (SEM and EDX quantifications completed the characterizations. This novel porphyrin dimer complex demonstrated fluorescence sensing of H2O2 in water for low oxygen concentrations in the range of 40–90 µM proving medical relevance for early diagnosis of diseases such as Alzheimer’s, Parkinson’s, Huntington’s, and even cancer because higher concentrations of H2O2 than 50 μM are consideredcytotoxic for life. Due to its optical properties, this novel metalloporphyrin–porphyrin based complex is expected to show PDT and bactericidal activity under visible-light irradiation.

  9. Self-Organizing Robots

    CERN Document Server

    Murata, Satoshi

    2012-01-01

    It is man’s ongoing hope that a machine could somehow adapt to its environment by reorganizing itself. This is what the notion of self-organizing robots is based on. The theme of this book is to examine the feasibility of creating such robots within the limitations of current mechanical engineering. The topics comprise the following aspects of such a pursuit: the philosophy of design of self-organizing mechanical systems; self-organization in biological systems; the history of self-organizing mechanical systems; a case study of a self-assembling/self-repairing system as an autonomous distributed system; a self-organizing robot that can create its own shape and robotic motion; implementation and instrumentation of self-organizing robots; and the future of self-organizing robots. All topics are illustrated with many up-to-date examples, including those from the authors’ own work. The book does not require advanced knowledge of mathematics to be understood, and will be of great benefit to students in the rob...

  10. Iron porphyrin-modified PVDF membrane as a biomimetic material and its effectiveness on nitric oxide binding

    Science.gov (United States)

    Can, Faruk; Demirci, Osman Cahit; Dumoulin, Fabienne; Erhan, Elif; Arslan, Leyla Colakerol; Ergenekon, Pınar

    2017-10-01

    Nitric oxide (NO) is a reactive gas well-known as an air pollutant causing severe environmental problems. NO is also an important signaling molecule having a strong affinity towards heme proteins in the body. Taking this specialty as a model, a biomimetic membrane was developed by modification of the membrane surface with iron-porphyrin which depicts very similar structure to heme proteins. In this study, PVDF membrane was coated with synthesized (4-carboxyphenyl)-10,15,20-triphenyl-porphyrin iron(III) chloride (FeCTPP) to promote NO fixation on the surface. The coated membrane was characterized in terms of ATR-IR spectra, contact angle measurement, chemical composition, and morphological structure. Contact angle of original PVDF first decreased sharply after plasma treatment and surface polymerization steps but after incorporation of FeCTPP, the surface acquired its hydrophobicity again. NO binding capability of modified membrane surface was evaluated on the basis of X-ray Photoelectron. Upon exposure to NO gas, a chemical shift of Fe+3 and appearance of new N peak was observed due to the electron transfer from NO ligand to Fe ion with the attachment of nitrosyl group to FeCTPP. This modification brings the functionality to the membrane for being used in biological systems such as membrane bioreactor material in biological NO removal technology.

  11. A buffer material optimal design in the radioactive wastes geological disposal using the satisficing trade-off method and the self-organizing map

    International Nuclear Information System (INIS)

    Okamoto, Takashi; Hanaoka, Yuya; Aiyoshi, Eitaro; Kobayashi, Yoko

    2012-01-01

    In this paper, we consider a multi-objective optimization method in order to obtain a preferred solution for the buffer material optimal design problem in the high-level radioactive wastes geological disposal. The buffer material optimal design problem is formulated as a constrained multi-objective optimization problem. Its Pareto optimal solutions are distributed evenly on whole bounds of the feasible region. Hence, we develop a search method to find a preferred solution easily for a decision maker from the Pareto optimal solutions which are distributed evenly and vastly. In the preferred solution search method, the visualization technique of a Pareto optimal solution set using the self-organizing map is introduced into the satisficing trade-off method which is the interactive method to obtain a Pareto optimal solution that satisfies a decision maker. We confirm the effectiveness of the preferred solution search method in the buffer material optimal design problem. (author)

  12. Porphyrins Fused with Unactivated Polycyclic Aromatic Hydrocarbons

    KAUST Repository

    Diev, Vyacheslav V.; Schlenker, Cody W.; Hanson, Kenneth; Zhong, Qiwen; Zimmerman, Jeramy D.; Forrest, Stephen R.; Thompson, Mark E.

    2012-01-01

    A systematic study of the preparation of porphyrins with extended conjugation by meso,β-fusion with polycyclic aromatic hydrocarbons (PAHs) is reported. The meso-positions of 5,15-unsubstituted porphyrins were readily functionalized with PAHs. Ring fusion using standard Scholl reaction conditions (FeCl 3, dichloromethane) occurs for perylene-substituted porphyrins to give a porphyrin β,meso annulated with perylene rings (0.7:1 ratio of syn and anti isomers). The naphthalene, pyrene, and coronene derivatives do not react under Scholl conditions but are fused using thermal cyclodehydrogenation at high temperatures, giving mixtures of syn and anti isomers of the meso,β-fused porphyrins. For pyrenyl-substituted porphyrins, a thermal method gives synthetically acceptable yields (>30%). Absorption spectra of the fused porphyrins undergo a progressive bathochromic shift in a series of naphthyl (λ max = 730 nm), coronenyl (λ max = 780 nm), pyrenyl (λ max = 815 nm), and perylenyl (λ max = 900 nm) annulated porphyrins. Despite being conjugated with unsubstituted fused PAHs, the β,meso-fused porphyrins are more soluble and processable than the parent nonfused precursors. Pyrenyl-fused porphyrins exhibit strong fluorescence in the near-infrared (NIR) spectral region, with a progressive improvement in luminescent efficiency (up to 13% with λ max = 829 nm) with increasing degree of fusion. Fused pyrenyl-porphyrins have been used as broadband absorption donor materials in photovoltaic cells, leading to devices that show comparatively high photovoltaic efficiencies. © 2011 American Chemical Society.

  13. Porphyrins Fused with Unactivated Polycyclic Aromatic Hydrocarbons

    KAUST Repository

    Diev, Vyacheslav V.

    2012-01-06

    A systematic study of the preparation of porphyrins with extended conjugation by meso,β-fusion with polycyclic aromatic hydrocarbons (PAHs) is reported. The meso-positions of 5,15-unsubstituted porphyrins were readily functionalized with PAHs. Ring fusion using standard Scholl reaction conditions (FeCl 3, dichloromethane) occurs for perylene-substituted porphyrins to give a porphyrin β,meso annulated with perylene rings (0.7:1 ratio of syn and anti isomers). The naphthalene, pyrene, and coronene derivatives do not react under Scholl conditions but are fused using thermal cyclodehydrogenation at high temperatures, giving mixtures of syn and anti isomers of the meso,β-fused porphyrins. For pyrenyl-substituted porphyrins, a thermal method gives synthetically acceptable yields (>30%). Absorption spectra of the fused porphyrins undergo a progressive bathochromic shift in a series of naphthyl (λ max = 730 nm), coronenyl (λ max = 780 nm), pyrenyl (λ max = 815 nm), and perylenyl (λ max = 900 nm) annulated porphyrins. Despite being conjugated with unsubstituted fused PAHs, the β,meso-fused porphyrins are more soluble and processable than the parent nonfused precursors. Pyrenyl-fused porphyrins exhibit strong fluorescence in the near-infrared (NIR) spectral region, with a progressive improvement in luminescent efficiency (up to 13% with λ max = 829 nm) with increasing degree of fusion. Fused pyrenyl-porphyrins have been used as broadband absorption donor materials in photovoltaic cells, leading to devices that show comparatively high photovoltaic efficiencies. © 2011 American Chemical Society.

  14. PREFACE: Self-organized nanostructures

    Science.gov (United States)

    Rousset, Sylvie; Ortega, Enrique

    2006-04-01

    the EUROCORES SONS Programme under the auspices of the European Science Foundation and the VI Framework Programme of the European Community. It was also funded by CNRS `formation permanente'. Major topics relevant to self-organization are covered in these papers. The first two papers deal with the physics of self-organized nucleation and growth. Both metal and semiconductor templates are investigated. The paper by Meyer zu Heringdorf focuses on the mesoscopic patterns formed by the Au-induced faceting of vicinal Si (001). Repain et al describe how uniform and long-range ordered nanostructures are built on a surface by using nucleation on a point-defect array. Electronic properties of such self-organized systems are reviewed by Mugarza and Ortega. The next three papers deal with molecules and self-organization. In the paper presented by Kröger, molecules are deposited on vicinal Au surfaces and are studied by STM. A very active field in self-organized nanostructures is the chemical route for nanoparticle synthesis. The paper by Piléni deals with self-organization of inorganic crystals produced by evaporation of a solution, also called colloids. Their physical properties are also treated. Gacoin et al illustrate chemical synthesis, including the template approach, using organized mesoporous silica films for the production of semiconductor or metal arrays of particles. An alternative method is developed in the paper by Allongue and Maroun which is the electrochemical method of building arrays of nanostructures. Ultimately, self-organization is a very interdisciplinary field. There is also an attempt in this issue to present some of the challenges using biology. The paper by Belamie et al deals with the self-assembly of biological macromolecules, such as chitin and collagen. Finally, Molodtsov and co-workers describe how a biological template can be used in order to achieve novel materials made of hybrid metallo-organic nanostructures.

  15. Self organized criticality

    International Nuclear Information System (INIS)

    Creutz, M.

    1993-03-01

    Self organized criticality refers to the tendency of highly dissipative systems to drive themselves to a critical state. This has been proposed to explain why observed physics often displays a wide disparity of length and time scales. The phenomenon can be studied in simple cellular automaton models

  16. Self-organizing networks

    DEFF Research Database (Denmark)

    Marchetti, Nicola; Prasad, Neeli R.; Johansson, Johan

    2010-01-01

    In this paper, a general overview of Self-Organizing Networks (SON), and the rationale and state-of-the-art of wireless SON are first presented. The technical and business requirements are then briefly treated, and the research challenges within the field of SON are highlighted. Thereafter, the r...

  17. A Porphyrin Complex as a Self-Conditioned Electrode Material for High-Performance Energy Storage.

    Science.gov (United States)

    Gao, Ping; Chen, Zhi; Zhao-Karger, Zhirong; Mueller, Jonathan E; Jung, Christoph; Klyatskaya, Svetlana; Diemant, Thomas; Fuhr, Olaf; Jacob, Timo; Behm, R Jürgen; Ruben, Mario; Fichtner, Maximilian

    2017-08-21

    The novel functionalized porphyrin [5,15-bis(ethynyl)-10,20-diphenylporphinato]copper(II) (CuDEPP) was used as electrodes for rechargeable energy-storage systems with an extraordinary combination of storage capacity, rate capability, and cycling stability. The ability of CuDEPP to serve as an electron donor or acceptor supports various energy-storage applications. Combined with a lithium negative electrode, the CuDEPP electrode exhibited a long cycle life of several thousand cycles and fast charge-discharge rates up to 53 C and a specific energy density of 345 Wh kg -1 at a specific power density of 29 kW kg -1 . Coupled with a graphite cathode, the CuDEPP anode delivered a specific power density of 14 kW kg -1 . Whereas the capacity is in the range of that of ordinary lithium-ion batteries, the CuDEPP electrode has a power density in the range of that of supercapacitors, thus opening a pathway toward new organic electrodes with excellent rate capability and cyclic stability. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  18. Self-organizing representations

    Energy Technology Data Exchange (ETDEWEB)

    Kohonen, T.

    1983-01-01

    A property which is commonplace in the brain but which has always been ignored in learning machines is the spatial order of the processing units. This order is clearly highly significant and in nature it develops gradually during the lifetime of the organism. It then serves as the basis for perceptual and cognitive processes, and memory, too. The spatial order in biological organisms is often believed to be genetically determined. It is therefore intriguing to learn that a meaningful and optimal spatial order is formed in an extremely simple self-organizing process whereby certain feature maps are formed automatically. 8 references.

  19. Molecular-wire behavior of OLED materials: exciton dynamics in multichromophoric Alq3-oligofluorene-Pt(II)porphyrin triads.

    Science.gov (United States)

    Montes, Victor A; Pérez-Bolívar, César; Agarwal, Neeraj; Shinar, Joseph; Anzenbacher, Pavel

    2006-09-27

    Donor-bridge-acceptor triads consisting of the Alq3 complex, oligofluorene bridge, and PtII tetraphenylporphyrin (PtTPP) were synthesized. The triads were designed to study the energy level/distance-dependence in energy transfer both in a solution and in solid state. The materials show effective singlet transfer from the Alq3-fluorene fluorophore to the porphyrin, while the triplet energy transfer, owing to the shorter delocalization of triplet excitons, appears to take place via a triplet energy cascade. Using femtosecond transient spectroscopy, the rate of the singlet-singlet energy transfer was determined. The exponential dependence of the donor-acceptor distance and the respective energy transfer rates of 7.1 x 1010 to 1.0 x 109 s-1 with the attenuation factor â of 0.21 +/- 0.02 A-1 suggest that the energy transfer proceeds via a mixed incohererent wire/superexchange mechanism. In the OLEDs fabricated using the Alq3-oligofluorene-PtTPP triads with better triplet level alignment, the order of a magnitude increase in efficacy appears to be due to facile triplet energy transfer. The devices, where the triplet-triplet energy transfer is of paramount importance, showed high color purity emission (CIE X,Y: 0.706, 0.277), which is almost identical to the emission from thin films. Most importantly, we believe that the design principles demonstrated above are general and may be used to prepare OLED materials with enhanced quantum efficacy at lowered operational potentials, being crucial for improved lifespan of OLEDs.

  20. Polymethylmethacrylate Doped with Porphyrin and Silver Nanoparticles as Lightactivated Antimicrobial Material

    Czech Academy of Sciences Publication Activity Database

    Lyutakov, O.; Hejna, O.; Solovyev, Andrey; Kalachyova, Y.; Švorčík, V.

    2014-01-01

    Roč. 4, č. 92 (2014), s. 50624-50630 ISSN 2046-2069 Institutional support: RVO:67985858 Keywords : photodynamic therapy * antibacterial activity * staphylococcus-aureus Subject RIV: JJ - Other Materials Impact factor: 3.840, year: 2014

  1. The Synthesis and Photophysical Characterization of Porphyrin Photoactive Materials for Use as Sensitizers in Organic Photovoltaics and Photodynamic Therapy

    Science.gov (United States)

    Marin, Dawn Marie

    Solar energy conversion and photodynamic therapy (PDT) are very different applications. However, both utilize very similar photoactive molecules called porphyrins. Porphyrins are structural analogs of chlorophyll and also function as prosthetic groups in some biological enzymes. Understanding the structure/function relationship of these molecules is crucial for enhancing the energy generation efficiency of molecular solar cells and improving chemotherapeutic activity in PDT. In this dissertation, two approaches were applied with the goal of increasing the efficiency of molecular semiconductors for these applications: the heavy atom effect and donor-acceptor molecules. We enhanced the efficiency of triplet excited state formation and singlet oxygen generation for porphyrin sensitizers using the heavy atom effect. The heavy atom effect induces spin-orbit coupling to promote intersystem crossing into the triplet state. In this study, a carbomethoxyphenyl substituent was replaced with either a bromophenyl or an iodophenyl substituent on 5,10,15,20-tetrakis(4-carbomethoxyphenyl)porphyrin. The longer lifetimes obtained from the increase in the triplet excited state allow for longer exciton diffusion lengths and lower recombination rates in photovoltaics. Also, the enhanced intersystem crossing is beneficial for photodynamic therapy because it increases singlet oxygen generation, which destroys tumor cells. Optimizing photovoltaic performance and PDT efficacy can also be accomplished with donor-acceptor molecules because they have extended electronic pi bond delocalization across the molecule, which causes the molecule to absorb longer wavelengths of light. Donor-acceptor molecules should produce photovoltaic devices that absorb more of the solar spectrum and produce sensitizers that absorb wavelengths of light that can penetrate through tissues. Donor-acceptor molecules were synthesized using 5,15-bis(4-carbomethoxyphenyl)porphyrin as the acceptor and thiazolo[5,4-d

  2. Novel polar sedimentary porphyrins

    Science.gov (United States)

    Prowse, W. G.; Maxwell, J. R.

    1989-11-01

    Two polar nickel porphyrins in Messel oil shale are shown to be the C 32 and C 30 components IIIa,b. In the sample examined, component IIIa is by far the major porphyrin alcohol and is present in an abundance similar to that of the major nickel alkyl porphyrin. These primary alcohols, which do not appear to be artifacts, are structurally related to alkyl porphyrins reported previously in Serpiano oil shale.

  3. Stepwise transformation of the molecular building blocks in a porphyrin-encapsulating metal-organic material

    KAUST Repository

    Zhang, ZhenJie; Wojtas, Łukasz; Eddaoudi, Mohamed; Zaworotko, Michael J.

    2013-01-01

    When immersed in solutions containing Cu(II) cations, the microporous metal-organic material P11 ([Cd4(BPT)4]·[Cd(C 44H36N8)(S)]·[S], BPT = biphenyl-3,4′,5-tricarboxylate) undergoes a transformation of its [Cd 2(COO)6]2- molecular building blocks

  4. Post-synthetic modification of porphyrin-encapsulating metal-organic materials by cooperative addition of inorganic salts to enhance CO 2/CH 4 selectivity

    KAUST Repository

    Zhang, ZhenJie

    2012-08-21

    Keeping MOM: Reaction of biphenyl-3,4\\',5-tricarboxylate and Cd(NO 3) 2 in the presence of meso-tetra(N-methyl-4-pyridyl) porphine tetratosylate afforded porph@MOM-11, a microporous metal-organic material (MOM) that encapsulates cationic porphyrins and solvent in alternating open channels. Porph@MOM-11 has cation and anion binding sites that facilitate cooperative addition of inorganic salts (such as M +Cl -) in a stoichiometric fashion. © 2012 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  5. Post-synthetic modification of porphyrin-encapsulating metal-organic materials by cooperative addition of inorganic salts to enhance CO 2/CH 4 selectivity

    KAUST Repository

    Zhang, ZhenJie; Gao, Wenyang; Wojtas, Łukasz; Ma, Shengqian; Eddaoudi, Mohamed; Zaworotko, Michael J.

    2012-01-01

    Keeping MOM: Reaction of biphenyl-3,4',5-tricarboxylate and Cd(NO 3) 2 in the presence of meso-tetra(N-methyl-4-pyridyl) porphine tetratosylate afforded porph@MOM-11, a microporous metal-organic material (MOM) that encapsulates cationic porphyrins and solvent in alternating open channels. Porph@MOM-11 has cation and anion binding sites that facilitate cooperative addition of inorganic salts (such as M +Cl -) in a stoichiometric fashion. © 2012 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  6. Templated synthesis, postsynthetic metal exchange, and properties of a porphyrin-encapsulating metal-organic material

    KAUST Repository

    Zhang, ZhenJie

    2012-01-18

    Reaction of biphenyl-3,4′,5-tricarboxylate (H 3BPT) and CdCl 2 in the presence of meso-tetra(N-methyl-4-pyridyl)porphine tetratosylate (TMPyP) afforded porph@MOM-10, a microporous metal-organic material containing CdTMPyP cations encapsulated in an anionic Cd(II) carboxylate framework, [Cd 6(BPT) 4Cl 4(H 2O) 4]. Porph@MOM-10 is a versatile platform that undergoes exchange to serve as the parent of a series of porph@MOMs that exhibit permanent porosity and heterogeneous catalytic activity. © 2011 American Chemical Society.

  7. Inverted porphyrins and expanded porphyrins: An overview

    Indian Academy of Sciences (India)

    Unknown

    More recently, synthetic porphyrins and porphyrin-like macrocycles have ... one of the meso carbons resulting in the formation of corroles; – (d) Isomeric ... spectroscopic, chemical and physical properties, which can find applications in ..... diol 55 under TFA catalysis yielding 20–28% yield of expected rubyrins 85 and 86 as.

  8. Self-Organized Transport System

    Science.gov (United States)

    2009-09-28

    This report presents the findings of the simulation model for a self-organized transport system where traffic lights communicate with neighboring traffic lights and make decisions locally to adapt to traffic conditions in real time. The model is insp...

  9. Porphyrins at interfaces

    Science.gov (United States)

    Auwärter, Willi; Écija, David; Klappenberger, Florian; Barth, Johannes V.

    2015-02-01

    Porphyrins and other tetrapyrrole macrocycles possess an impressive variety of functional properties that have been exploited in natural and artificial systems. Different metal centres incorporated within the tetradentate ligand are key for achieving and regulating vital processes, including reversible axial ligation of adducts, electron transfer, light-harvesting and catalytic transformations. Tailored substituents optimize their performance, dictating their arrangement in specific environments and mediating the assembly of molecular nanoarchitectures. Here we review the current understanding of these species at well-defined interfaces, disclosing exquisite insights into their structural and chemical properties, and also discussing methods by which to manipulate their intramolecular and organizational features. The distinct characteristics arising from the interfacial confinement offer intriguing prospects for molecular science and advanced materials. We assess the role of surface interactions with respect to electronic and physicochemical characteristics, and describe in situ metallation pathways, molecular magnetism, rotation and switching. The engineering of nanostructures, organized layers, interfacial hybrid and bio-inspired systems is also addressed.

  10. Self-organized Learning Environments

    DEFF Research Database (Denmark)

    Dalsgaard, Christian; Mathiasen, Helle

    2007-01-01

    system actively. The two groups used the system in their own way to support their specific activities and ways of working. The paper concludes that self-organized learning environments can strengthen the development of students’ academic as well as social qualifications. Further, the paper identifies......The purpose of the paper is to discuss the potentials of using a conference system in support of a project based university course. We use the concept of a self-organized learning environment to describe the shape of the course. In the paper we argue that educational technology, such as conference...... systems, has a potential to support students’ development of self-organized learning environments and facilitate self-governed activities in higher education. The paper is based on an empirical study of two project groups’ use of a conference system. The study showed that the students used the conference...

  11. Relativistic fluid theories - Self organization

    International Nuclear Information System (INIS)

    Mahajan, S.M.; Hazeltine, R.D.; Yoshida, Z.

    2003-01-01

    Developments in two distinct but related subjects are reviewed: 1) Formulation and investigation of closed fluid theories which transcend the limitations of standard magnetohydrodynamics (MHD), in particular, theories which are valid in the long mean free path limit and in which pressure anisotropy, heat flow, and arbitrarily strong sheared flows are treated consistently, and 2) Exploitation of the two-fluid theories to derive new plasma configurations in which the flow-field is a co-determinant of the overall dynamics; some of these states belong to the category of self-organized relaxed states. Physical processes which may provide a route to self-organization and complexity are also explored. (author)

  12. Porphyrins - blood test

    Science.gov (United States)

    ... page: //medlineplus.gov/ency/article/003372.htm Porphyrins blood test To use the sharing features on this page, ... blood or the urine . This article discusses the blood test. How the Test is Performed A blood sample ...

  13. Corroles-Porphyrins: A Teamwork for Gas Sensor Arrays

    Directory of Open Access Journals (Sweden)

    Rosamaria Capuano

    2015-04-01

    Full Text Available Porphyrins provide an excellent material for chemical sensors, and they have been used for sensing species both in air and solution. In the gas phase, the broad selectivity of porphyrins is largely dependant on molecular features, such as the metal ion complexed at the core of the aromatic ring and the peripheral substituents. Although these features have been largely exploited to design gas sensor arrays, so far, little attention has been devoted to modify the sensing properties of these macrocycles by variation of the molecular aromatic ring. In this paper, the gas sensing properties of a porphyrin analog, the corrole, are studied in comparison with those of the parent porphyrin. Results show that changes in the aromatic ring have important consequences on the sensitivity and selectivity of the sensors and that porphyrins and corroles can positively cooperate to enhance the performance of sensor arrays.

  14. Porphyrin-based Photocatalytic Nanolithography

    Energy Technology Data Exchange (ETDEWEB)

    Bearinger, J P; Stone, G; Dugan, L C; Dasher, B E; Stockton, C; Conway, J W; Kuenzler, T; Hubbell, J A

    2009-06-08

    Nanoarray fabrication is a multidisciplinary endeavor encompassing materials science, chemical engineering and biology. We form nanoarrays via a new technique, porphyrin-based photocatalytic nanolithography (PCNL). The nanoarrays, with controlled features as small as 200 nm, exhibit regularly ordered patterns and may be appropriate for (a) rapid and parallel proteomic screening of immobilized biomolecules, (b) protein-protein interactions and/or (c) biophysical and molecular biology studies involving spatially dictated ligand placement. We demonstrate protein immobilization utilizing nanoarrays fabricated via PCNL on silicon substrates, where the immobilized proteins are surrounded by a non-fouling polymer background.

  15. Self Organization in Compensated Semiconductors

    Science.gov (United States)

    Berezin, Alexander A.

    2004-03-01

    In partially compensated semiconductor (PCS) Fermi level is pinned to donor sub-band. Due to positional randomness and almost isoenergetic hoppings, donor-spanned electronic subsystem in PCS forms fluid-like highly mobile collective state. This makes PCS playground for pattern formation, self-organization, complexity emergence, electronic neural networks, and perhaps even for origins of life, bioevolution and consciousness. Through effects of impact and/or Auger ionization of donor sites, whole PCS may collapse (spinodal decomposition) into microblocks potentially capable of replication and protobiological activity (DNA analogue). Electronic screening effects may act in RNA fashion by introducing additional length scale(s) to system. Spontaneous quantum computing on charged/neutral sites becomes potential generator of informationally loaded microstructures akin to "Carl Sagan Effect" (hidden messages in Pi in his "Contact") or informational self-organization of "Library of Babel" of J.L. Borges. Even general relativity effects at Planck scale (R.Penrose) may affect the dynamics through (e.g.) isotopic variations of atomic mass and local density (A.A.Berezin, 1992). Thus, PCS can serve as toy model (experimental and computational) at interface of physics and life sciences.

  16. Self-organization, Networks, Future

    Directory of Open Access Journals (Sweden)

    T. S. Akhromeyeva

    2013-01-01

    Full Text Available This paper presents an analytical review of a conference on the great scientist, a brilliant professor, an outstanding educator Sergei Kapitsa, held in November 2012. In the focus of this forum were problems of self-organization and a paradigm of network structures. The use of networks in the context of national defense, economics, management of mass consciousness was discussed. The analysis of neural networks in technical systems, the structure of the brain, as well as in the space of knowledge, information, and behavioral strategies plays an important role. One of the conference purposes was to an online organize community in Russia and to identify the most promising directions in this field. Some of them are presented in this paper.

  17. Self-organizing magnetohydrodynamic plasma

    International Nuclear Information System (INIS)

    Sato, T.; Horiuchi, R.; Watanabe, K.; Hayashi, T.; Kusano, K.

    1990-09-01

    In a resistive magnetohydrodynamic (MHD) plasma, both the magnetic energy and the magnetic helicity dissipate with the resistive time scale. When sufficiently large free magnetic energy does exist, however, an ideal current driven instability is excited whereby magnetic reconnection is driven at a converging point of induced plasma flows which does exist in a bounded compressible plasma. At a reconnection point excess free energy (entropy) is rapidly dissipated by ohmic heating and lost by radiation, while magnetic helicity is completely conserved. The magnetic topology is largely changed by reconnection and a new ordered structure with the same helicity is created. It is discussed that magnetic reconnection plays a key role in the MHD self-organization process. (author)

  18. Push-pull quinoidal porphyrins.

    Science.gov (United States)

    Smith, Martin J; Blake, Iain M; Clegg, William; Anderson, Harry L

    2018-05-01

    A family of push-pull quinoidal porphyrin monomers has been prepared from a meso-formyl porphyrin by bromination, thioacetal formation, palladium-catalyzed coupling with malononitrile and oxidation with DDQ. Attempts at extending this synthesis to a push-pull quinoidal/cumulenic porphyrin dimer were not successful. The crystal structures of the quinoidal porphyrins indicate that there is no significant contribution from singlet biradical or zwitterionic resonance forms. The crystal structure of an ethyne-linked porphyrin dimer shows that the torsion angle between the porphyrin units is only about 3°, in keeping with crystallographic results on related compounds, but contrasting with the torsion angle of about 35° predicted by computational studies. The free-base quinoidal porphyrin monomers form tightly π-stacked layer structures, despite their curved geometries and bulky aryl substituents.

  19. Hierarchical organization versus self-organization

    OpenAIRE

    Busseniers, Evo

    2014-01-01

    In this paper we try to define the difference between hierarchical organization and self-organization. Organization is defined as a structure with a function. So we can define the difference between hierarchical organization and self-organization both on the structure as on the function. In the next two chapters these two definitions are given. For the structure we will use some existing definitions in graph theory, for the function we will use existing theory on (self-)organization. In the t...

  20. Synthetic Porphyrins and Metalloporphyrins

    Science.gov (United States)

    1976-12-10

    disease syndromes , drug metabolism and cancer. Porphyrins and metalloporphyrins such as tetraphenylporphine sulfonate and hema- toporphyrin have been found...267(1941). 34. A. D. Adler, F. R. Longo, J. D. Finarelli, J. Goldmacher, J. Assour and L. Korsakoff , J. Org. Chem., 32, 476(1967). 35. H. W

  1. TWO CHANNELS OF SELF-ORGANIZATION OF IONIZED GASEOUS MEDIA

    Directory of Open Access Journals (Sweden)

    Benedict Oprescu

    2013-12-01

    Full Text Available The appearance is pointed out, experimentally, of a complex electric charge structure, within an ionized gas, relatively homogeneous at first, under the influence of a number of external constraints. Two different mechanisms of self-organization are presented: the former implying, essentially, long-range interactions, and the latter implying, essentially, short-range quantum interactions. The phenomenological scenarios are presented, which underlie the two mechanisms of self-organization, as well as the broader theoretical frame, currently accepted, concerning the generation of complexity in the material media that are far from the state of thermodynamic equilibrium.

  2. Self-organization through decoupling

    Directory of Open Access Journals (Sweden)

    Romar Correa

    2000-01-01

    Full Text Available In one line of research, the transition from Fordism to flexible specialisation is explained by the infeasibility of a mode of regulation that relied on central controls. According to another explanation, which we favour, the disintegration of vertically integrated production is unpredictable. The concept of self-organization is often recommended to model the transition from hierarchical organizational forms to flatter structures. Formally, a conditionally stable nonlinear system of differential equations is examined. In the first thesis, the characteristic roots with positive real parts play the role of ‘order’ parameters which can become unstable modes. The rest of the variables refer to stable modes. The strategy is to show that the stable modes can be expressed in terms of the unstable modes so that the former can be eliminated from the system. On the other hand, we provide a theorem showing that a coupled set of differential equations can become uncoupled and vice versa as an argument in favour of the second thesis. The path of evolution can turn both ways.

  3. Self-organized criticality paradigm

    International Nuclear Information System (INIS)

    Duran, I.; Stoeckel, J.; Hron, M.; Horacek, J.; Jakubka, K.; Kryska, L.

    2000-01-01

    According to the paradigm of the Self-Organized Criticality (SOC), the anomalous transport in tokamaks is caused by fast transient processes - avalanches. One of the manifestations of these phenomena should be 1/f decay of electrostatic fluctuations power spectra in a certain frequency range. In this paper, the frequency spectra of floating potential, density and fluctuation-induced flux, measured by poloidal and radial arrays of Langmuir probes on the CASTOR tokamak, are presented. The floating potential and the fluctuation-induced flux decay from 30 kHz up to 100 kHz as f -1 . The plasma density decays as f -1 in a more narrow band, 20 to 40 kHz. The possible limitation of SOC behavior for frequencies higher than 100 kHz due to intermittency is stressed. For this reason the Probability Distribution Functions (PDFs) of floating potential fluctuations were computed at different time scales using wavelet transform. A clear departure of the computed PDFs from Gaussianity, which is a classical signature of intermittency, is observed at time scales under 10 μs (100 kHz). (author)

  4. Dye linked conjugated homopolymers: using conjugated polymer electroluminescence to optically pump porphyrin-dye emission

    DEFF Research Database (Denmark)

    Nielsen, K.T.; Spanggaard, H.; Krebs, Frederik C

    2004-01-01

    . Electroluminescent devices of the homopolymer itself and of the zinc-porphyrin containing polymer were prepared and the nature of the electroluminescence was characterized. The homopolymer segments were found to optically pump the emission of the zinc-porphyrin dye moities. The homopolymer exhibits blue......Zinc-porphyrin dye molecules were incorporated into the backbone of a conjugated polymer material by a method, which allowed for the incorporation of only one zinc-porphyrin dye molecule into the backbone of each conjugated polymer molecule. The electronic properties of the homopolymer were...

  5. Growing hierarchical probabilistic self-organizing graphs.

    Science.gov (United States)

    López-Rubio, Ezequiel; Palomo, Esteban José

    2011-07-01

    Since the introduction of the growing hierarchical self-organizing map, much work has been done on self-organizing neural models with a dynamic structure. These models allow adjusting the layers of the model to the features of the input dataset. Here we propose a new self-organizing model which is based on a probabilistic mixture of multivariate Gaussian components. The learning rule is derived from the stochastic approximation framework, and a probabilistic criterion is used to control the growth of the model. Moreover, the model is able to adapt to the topology of each layer, so that a hierarchy of dynamic graphs is built. This overcomes the limitations of the self-organizing maps with a fixed topology, and gives rise to a faithful visualization method for high-dimensional data.

  6. Complex Systems and Self-organization Modelling

    CERN Document Server

    Bertelle, Cyrille; Kadri-Dahmani, Hakima

    2009-01-01

    The concern of this book is the use of emergent computing and self-organization modelling within various applications of complex systems. The authors focus their attention both on the innovative concepts and implementations in order to model self-organizations, but also on the relevant applicative domains in which they can be used efficiently. This book is the outcome of a workshop meeting within ESM 2006 (Eurosis), held in Toulouse, France in October 2006.

  7. Self-organization phenomena in plasma physics

    International Nuclear Information System (INIS)

    Sanduloviciu, M.; Popescu, S.

    2001-01-01

    The self-assembling in nature and laboratory of structures in systems away from thermodynamic equilibrium is one of the problems that mostly fascinates the scientists working in all branches of science. In this context a substantial progress has been obtained by investigating the appearance of spatial and spatiotemporal patterns in plasma. These experiments revealed the presence of a scenario of self-organization able to suggest an answer to the central problem of the 'Science of Complexity', why matter transits spontaneously from a disordered into an ordered state? Based on this scenario of self-organization we present arguments proving the possibility to explain the challenging problems of nonequilibrium physics in general. These problems refer to: (i) genuine origin of phase transitions observed in gaseous conductors and semiconductors; (ii) the elucidation of the role played by self-organization in the simulation of oscillations; (iii) the physical basis of anomalous transport of matter and energy with special reference to the possibilities of improving the economical performance of fusion devices; (iv) the possibility to use self-confined gaseous space charged configurations as an alternative to the magnetically confined plasma used at present in fusion devices. In other branches of sciences, as for instance in Biology, the self-organization scenario reveals a new insight into a mechanism able to explain the appearance of the simplest possible space charge configuration able to evolve, under suitable conditions, into prebiotic structures. Referring to phenomena observed in nature, the same self-organization scenario suggests plausible answers to the appearance of ball lightening but also to the origin of the flickering phenomena observed in the light emission of the Sun and stars. For theory the described self-organization scenario offers a new physical basis for many problems of nonlinear science not solved yet and also a new model for the so-called 'self

  8. Self-organization at the frictional interface for green tribology.

    Science.gov (United States)

    Nosonovsky, Michael

    2010-10-28

    Despite the fact that self-organization during friction has received relatively little attention from tribologists so far, it has the potential for the creation of self-healing and self-lubricating materials, which are important for green or environment-friendly tribology. The principles of the thermodynamics of irreversible processes and of the nonlinear theory of dynamical systems are used to investigate the formation of spatial and temporal structures during friction. The transition to the self-organized state with low friction and wear occurs through destabilization of steady-state (stationary) sliding. The criterion for destabilization is formulated and several examples are discussed: the formation of a protective film, microtopography evolution and slip waves. The pattern formation may involve self-organized criticality and reaction-diffusion systems. A special self-healing mechanism may be embedded into the material by coupling the corresponding required forces. The analysis provides the structure-property relationship, which can be applied for the design optimization of composite self-lubricating and self-healing materials for various ecologically friendly applications and green tribology.

  9. Non-Taylor magnetohydrodynamic self-organization

    International Nuclear Information System (INIS)

    Zhu, Shao-ping; Horiuchi, Ritoku; Sato, Tetsuya.

    1994-10-01

    A self-organization process in a plasma with a finite pressure is investigated by means of a three-dimensional magnetohydrodynamic simulation. It is demonstrated that a non-Taylor finite β self-organized state is realized in which a perpendicular component of the electric current is generated and the force-free(parallel) current decreases until they reach to almost the same level. The self-organized state is described by an MHD force-balance relation, namely, j perpendicular = B x ∇p/B·B and j parallel = μB where μ is not a constant, and the pressure structure resembles the structure of the toroidal magnetic field intensity. Unless an anomalous perpendicular thermal conduction arises, the plasma cannot relax to a Taylor state but to a non-Taylor (non-force-free) self-organized state. This state becomes more prominent for a weaker resistivity condition. The non-Taylor state has a rather universal property, for example, independence of the initial β value. Another remarkable finding is that the Taylor's conjecture of helicity conservation is, in a strict sense, not valid. The helicity dissipation occurs and its rate slows down critically in accordance with the stepwise relaxation of the magnetic energy. It is confirmed that the driven magnetic reconnection caused by the nonlinearly excited plasma kink flows plays the leading role in all of these key features of the non-Taylor self-organization. (author)

  10. Singularity spectrum of self-organized criticality

    International Nuclear Information System (INIS)

    Canessa, E.

    1992-10-01

    I introduce a simple continuous probability theory based on the Ginzburg-Landau equation that provides for the first time a common analytical basis to relate and describe the main features of two seemingly different phenomena of condensed-matter physics, namely self-organized criticality and multifractality. Numerical support is given by a comparison with reported simulation data. Within the theory the origin of self-organized critical phenomena is analysed in terms of a nonlinear singularity spectrum different form the typical convex shape due to multifractal measures. (author). 29 refs, 5 figs

  11. Self-organizing sensing and actuation for automatic control

    Science.gov (United States)

    Cheng, George Shu-Xing

    2017-07-04

    A Self-Organizing Process Control Architecture is introduced with a Sensing Layer, Control Layer, Actuation Layer, Process Layer, as well as Self-Organizing Sensors (SOS) and Self-Organizing Actuators (SOA). A Self-Organizing Sensor for a process variable with one or multiple input variables is disclosed. An artificial neural network (ANN) based dynamic modeling mechanism as part of the Self-Organizing Sensor is described. As a case example, a Self-Organizing Soft-Sensor for CFB Boiler Bed Height is presented. Also provided is a method to develop a Self-Organizing Sensor.

  12. Fusing porphyrins with polycyclic aromatic hydrocarbons and heterocycles for optoelectronic applications

    Science.gov (United States)

    Thompson, Mark E.; Diev, Viacheslav; Hanson, Kenneth; Forrest, Stephen R.

    2015-08-18

    A compound that can be used as a donor material in organic photovoltaic devices comprising a non-activated porphyrin fused with one or more non-activated polycyclic aromatic rings or one or more non-activated heterocyclic rings can be obtained by a thermal fusion process. The compounds can include structures of Formula I: ##STR00001## By heating the reaction mixture of non-activated porphyrins with non-activated polycyclic aromatic rings or heterocyclic rings to a fusion temperature and holding for a predetermined time, fusion of one or more polycyclic rings or heterocyclic rings to the non-activated porphyrin core in meso,.beta. fashion is achieved resulting in hybrid structures containing a distorted porphyrin ring with annulated aromatic rings. The porphyrin core can be olygoporphyrins.

  13. Self-organized critical pinball machine

    DEFF Research Database (Denmark)

    Flyvbjerg, H.

    2004-01-01

    The nature of self-organized criticality (SOC) is pin-pointed with a simple mechanical model: a pinball machine. Its phase space is fully parameterized by two integer variables, one describing the state of an on-going game, the other describing the state of the machine. This is the simplest...

  14. Self-organized criticality in fragmenting

    DEFF Research Database (Denmark)

    Oddershede, L.; Dimon, P.; Bohr, J.

    1993-01-01

    The measured mass distributions of fragments from 26 fractured objects of gypsum, soap, stearic paraffin, and potato show evidence of obeying scaling laws; this suggests the possibility of self-organized criticality in fragmenting. The probability of finding a fragment scales inversely to a power...

  15. Functional self-organization in complex systems

    Energy Technology Data Exchange (ETDEWEB)

    Fontana, W. (Los Alamos National Lab., NM (USA) Santa Fe Inst., NM (USA))

    1990-01-01

    A novel approach to functional self-organization is presented. It consists of a universe generated by a formal language that defines objects (=programs), their meaning (=functions), and their interactions (=composition). Results obtained so far are briefly discussed. 17 refs., 5 figs.

  16. Quantum self-organization and nuclear collectivities

    Science.gov (United States)

    Otsuka, T.; Tsunoda, Y.; Togashi, T.; Shimizu, N.; Abe, T.

    2018-02-01

    The quantum self-organization is introduced as one of the major underlying mechanisms of the quantum many-body systems. In the case of atomic nuclei as an example, two types of the motion of nucleons, single-particle states and collective modes, dominate the structure of the nucleus. The outcome of the collective mode is determined basically by the balance between the effect of the mode-driving force (e.g., quadrupole force for the ellipsoidal deformation) and the resistance power against it. The single-particle energies are one of the sources to produce such resistance power: a coherent collective motion is more hindered by larger gaps between relevant single particle states. Thus, the single-particle state and the collective mode are “enemies” each other. However, the nuclear forces are demonstrated to be rich enough so as to enhance relevant collective mode by reducing the resistance power by changing singleparticle energies for each eigenstate through monopole interactions. This will be verified with the concrete example taken from Zr isotopes. Thus, when the quantum self-organization occurs, single-particle energies can be self-organized, being enhanced by (i) two quantum liquids, e.g., protons and neutrons, (ii) two major force components, e.g., quadrupole interaction (to drive collective mode) and monopole interaction (to control resistance). In other words, atomic nuclei are not necessarily like simple rigid vases containing almost free nucleons, in contrast to the naïve Fermi liquid picture. Type II shell evolution is considered to be a simple visible case involving excitations across a (sub)magic gap. The quantum self-organization becomes more important in heavier nuclei where the number of active orbits and the number of active nucleons are larger. The quantum self-organization is a general phenomenon, and is expected to be found in other quantum systems.

  17. Self-organization of polymerizable bolaamphiphiles bearing diacetylene mesogenic group.

    Science.gov (United States)

    Yin, Shouchun; Song, Bo; Liu, Guanqing; Wang, Zhiqiang; Zhang, Xi

    2007-05-22

    We report herein the synthesis of a series of polymerizable bolaamphiphiles containing a diacetylene group and mesogenic unit and their self-organization behaviors in bulk and at interface. The polymerizable bolaamphiphiles are noted as DPDA-n, where n refers to the spacer length of alkyl chain. DPDA-10 with suitable spacer length can self-organize into stable cylindrical micellar nanostructures, and these nanostructures have preferred orientation regionally when adsorbed at the mica/water interface. It is confirmed that the micellar nanostructure of DPDA-10 can be polymerized both in the bulk solution and in the film by UV irradiation. The emission property of DPDA-10 after UV irradiation has been significantly enhanced in comparison to that before polymerization, which may be due to the extension of the conjugated system arising from the transformation of the diacetylene group into polydiacetylene upon polymerization. In addition, the self-organization of DPDA-n is dependent on the spacer length. DPDA-7 with a short spacer length forms an irregular flat sheet structure with many defects; DPDA-15 with a long spacer length forms rodlike micellar structures. Thus, this work may provide a new approach for designing and fabricating organic functional nanostructured materials.

  18. Nanoscience with liquid crystals from self-organized nanostructures to applications

    CERN Document Server

    Li, Quan

    2014-01-01

    This book focuses on the exciting topic of nanoscience with liquid crystals: from self-organized nanostructures to applications. The elegant self-organized liquid crystalline nanostructures, the synergetic characteristics of liquid crystals and nanoparticles, liquid crystalline nanomaterials, synthesis of nanomaterials using liquid crystals as templates, nanoconfinement and nanoparticles of liquid crystals are covered and discussed, and the prospect of fabricating functional materials is highlighted. Contributions, collecting the scattered literature of the field from leading and active player

  19. Synthesis of metallic nanoshells on porphyrin-stabilized emulsions

    Science.gov (United States)

    Wang, Haorong [Albuquerque, NM; Song, Yujiang [Albuquerque, NM; Shelnutt, John A [Tijeras, NM; Medforth, Craig J [Winters, CA

    2011-12-13

    Metal nanostructures formed by photocatalytic interfacial synthesis using a porphyrin-stabilized emulsion template and the method for making the nanostructures. Catalyst-seeded emulsion droplets are employed as templates for hollow-nanoshell growth. The hollow metal nanospheres may be formed with or without inclusions of other materials.

  20. Self-organization in metal complexes

    International Nuclear Information System (INIS)

    Radecka-Paryzek, W.

    1999-01-01

    Inorganic self-organization involves the spontaneous generation of well-defined supramolecular architectures from metal ions and organic ligands. The basic concept of supramolecular chemistry is a molecular recognition. When the substrate are metal ions, recognition is expressed in the stability and selectivity of metal ion complexation by organic ligands and depends on the geometry of the ligand and on their binding sites that it contains. The combination of the geometric features of the ligand units and the coordination geometries of the metal ions provides very efficient tool for the synthesis of novel, intriguing and highly sophisticated species such as catenanes, box structures, double and triple helicates with a variety of interesting properties. The article will focus on the examples of inorganic self-organization involving the templating as a first step for the assembly of supramolecular structures of high complexity. (author)

  1. Self-organized critical neural networks

    International Nuclear Information System (INIS)

    Bornholdt, Stefan; Roehl, Torsten

    2003-01-01

    A mechanism for self-organization of the degree of connectivity in model neural networks is studied. Network connectivity is regulated locally on the basis of an order parameter of the global dynamics, which is estimated from an observable at the single synapse level. This principle is studied in a two-dimensional neural network with randomly wired asymmetric weights. In this class of networks, network connectivity is closely related to a phase transition between ordered and disordered dynamics. A slow topology change is imposed on the network through a local rewiring rule motivated by activity-dependent synaptic development: Neighbor neurons whose activity is correlated, on average develop a new connection while uncorrelated neighbors tend to disconnect. As a result, robust self-organization of the network towards the order disorder transition occurs. Convergence is independent of initial conditions, robust against thermal noise, and does not require fine tuning of parameters

  2. Information Driven Ecohydrologic Self-Organization

    Directory of Open Access Journals (Sweden)

    Benjamin L. Ruddell

    2010-09-01

    Full Text Available Variability plays an important role in the self-organized interaction between vegetation and its environment, yet the principles that characterize the role of the variability in these interactions remain elusive. To address this problem, we study the dependence between a number of variables measured at flux towers by quantifying the information flow between the different variables along with the associated time lag. By examining this network of feedback loops for seven ecosystems in different climate regions, we find that: (1 the feedback tends to maximize information production in the entire system, and the latter increases with increasing variability within the whole system; and (2 variables that participate in feedback exhibit moderated variability. Self-organization arises as a tradeoff where the ability of the total system to maximize information production through feedback is limited by moderate variability of the participating variables. This relationship between variability and information production leads to the emergence of ordered organization.

  3. Workplace Accidents and Self-Organized Criticality

    OpenAIRE

    Mauro, John C.; Diehl, Brett; Marcellin, Richard F.; Vaughn, Daniel J.

    2018-01-01

    The occurrence of workplace accidents is described within the context of self-organized criticality, a theory from statistical physics that governs a wide range of phenomena across physics, biology, geosciences, economics, and the social sciences. Workplace accident data from the U.S. Bureau of Labor Statistics reveal a power-law relationship between the number of accidents and their severity as measured by the number of days lost from work. This power-law scaling is indicative of workplace a...

  4. Self-organization in circular shear layers

    DEFF Research Database (Denmark)

    Bergeron, K.; Coutsias, E.A.; Lynov, Jens-Peter

    1996-01-01

    Experiments on forced circular shear layers performed in both magnetized plasmas and in rotating fluids reveal qualitatively similar self-organization processes leading to the formation of patterns of coherent vortical structures with varying complexity. In this paper results are presented from...... both weakly nonlinear analysis and full numerical simulations that closely reproduce the experimental observations. Varying the Reynolds number leads to bifurcation sequences accompanied by topological changes in the distribution of the coherent structures as well as clear transitions in the total...

  5. Self-organized criticality in neural networks

    Science.gov (United States)

    Makarenkov, Vladimir I.; Kirillov, A. B.

    1991-08-01

    Possible mechanisms of creating different types of persistent states for informational processing are regarded. It is presented two origins of criticalities - self-organized and phase transition. A comparative analyses of their behavior is given. It is demonstrated that despite a likeness there are important differences. These differences can play a significant role to explain the physical issue of such highest functions of the brain as a short-term memory and attention. 1.

  6. Instantons in Self-Organizing Logic Gates

    Science.gov (United States)

    Bearden, Sean R. B.; Manukian, Haik; Traversa, Fabio L.; Di Ventra, Massimiliano

    2018-03-01

    Self-organizing logic is a recently suggested framework that allows the solution of Boolean truth tables "in reverse"; i.e., it is able to satisfy the logical proposition of gates regardless to which terminal(s) the truth value is assigned ("terminal-agnostic logic"). It can be realized if time nonlocality (memory) is present. A practical realization of self-organizing logic gates (SOLGs) can be done by combining circuit elements with and without memory. By employing one such realization, we show, numerically, that SOLGs exploit elementary instantons to reach equilibrium points. Instantons are classical trajectories of the nonlinear equations of motion describing SOLGs and connect topologically distinct critical points in the phase space. By linear analysis at those points, we show that these instantons connect the initial critical point of the dynamics, with at least one unstable direction, directly to the final fixed point. We also show that the memory content of these gates affects only the relaxation time to reach the logically consistent solution. Finally, we demonstrate, by solving the corresponding stochastic differential equations, that, since instantons connect critical points, noise and perturbations may change the instanton trajectory in the phase space but not the initial and final critical points. Therefore, even for extremely large noise levels, the gates self-organize to the correct solution. Our work provides a physical understanding of, and can serve as an inspiration for, models of bidirectional logic gates that are emerging as important tools in physics-inspired, unconventional computing.

  7. Pseudo-self-organized topological phases in glassy selenides for IR photonics

    Energy Technology Data Exchange (ETDEWEB)

    Shpotyuk, O. [Lviv Institute of Materials of Scientific Research Company ' ' Carat' ' 202, Stryjska str., 79031 Lviv (Ukraine); Institute of Physics of Jan Dlugosz University 13/15, al. Armii Krajowej, 42201 Czestochowa (Poland); Golovchak, R. [Lviv Institute of Materials of Scientific Research Company ' ' Carat' ' 202, Stryjska str., 79031 Lviv (Ukraine)

    2011-09-15

    Network-forming cluster approach is applied to As-Se and Ge-Se glasses to justify their tendency to self-organization. It is shown that reversibility windows determined by temperature-modulated differential scanning calorimetry using short-term aged or as-prepared samples do not necessary coincide with self-organized phase in these materials. The obtained results testify also pseudo-self-organization phenomenon in Ge-Se glasses: over-constrained outrigger raft structural units built of two edge- and four corner-shared tetrahedra are interconnected via optimally-constrained {identical_to}Ge-Se-Se-Ge{identical_to} bridges within the range of compositions identified previously as self-organized phase by temperature modulated differential scanning calorimetry technique. (copyright 2011 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim) (orig.)

  8. Concept and Feasibility Study of Self-Organized Electrochemical Devices

    National Research Council Canada - National Science Library

    Moorehead, William

    2002-01-01

    .... In this work, using attractive and repulsive London-van der Waals forces, a self-organized, interpenetrating, separator-free rechargeable lithium ion battery called a self-organized battery system (SBS) is proposed...

  9. Self-Organization Activities of College Students: Challenges and Opportunities

    Science.gov (United States)

    Shmurygina, Natalia; Bazhenova, Natalia; Bazhenov, Ruslan; Nikolaeva, Natalia; Tcytcarev, Andrey

    2016-01-01

    The article provides the analysis of self-organization activities of college students related to their participation in youth associations activities. The purpose of research is to disclose a degree of students' activities demonstration based on self-organization processes, assessment of existing self-organization practices of the youth,…

  10. Do earthquakes exhibit self-organized criticality?

    International Nuclear Information System (INIS)

    Yang Xiaosong; Ma Jin; Du Shuming

    2004-01-01

    If earthquakes are phenomena of self-organized criticality (SOC), statistical characteristics of the earthquake time series should be invariant after the sequence of events in an earthquake catalog are randomly rearranged. In this Letter we argue that earthquakes are unlikely phenomena of SOC because our analysis of the Southern California Earthquake Catalog shows that the first-return-time probability P M (T) is apparently changed after the time series is rearranged. This suggests that the SOC theory should not be used to oppose the efforts of earthquake prediction

  11. Supramolecular Allosteric Cofacial Porphyrin Complexes

    International Nuclear Information System (INIS)

    Oliveri, Christopher G.; Gianneschi, Nathan C.; Nguyen, Son Binh T.; Mirkin, Chad A.; Stern, Charlotte L.; Wawrzak, Zdzislaw; Pink, Maren

    2008-01-01

    Nature routinely uses cooperative interactions to regulate cellular activity. For years, chemists have designed synthetic systems that aim toward harnessing the reactivity common to natural biological systems. By learning how to control these interactions in situ, one begins to allow for the preparation of man-made biomimetic systems that can efficiently mimic the interactions found in Nature. To this end, we have designed a synthetic protocol for the preparation of flexible metal-directed supramolecular cofacial porphyrin complexes which are readily obtained in greater than 90% yield through the use of new hemilabile porphyrin ligands with bifunctional ether-phosphine or thioether-phosphine substituents at the 5 and 15 positions on the porphyrin ring. The resulting architectures contain two hemilabile ligand-metal domains (Rh I or Cu I sites) and two cofacially aligned porphyrins (Zn II sites), offering orthogonal functionalities and allowing these multimetallic complexes to exist in two states, 'condensed' or 'open'. Combining the ether-phosphine ligand with the appropriate Rh I or Cu I transition-metal precursors results in 'open' macrocyclic products. In contrast, reacting the thioether-phosphine ligand with RhI or CuI precursors yields condensed structures that can be converted into their 'open' macrocyclic forms via introduction of additional ancillary ligands. The change in cavity size that occurs allows these structures to function as allosteric catalysts for the acyl transfer reaction between X-pyridylcarbinol (where X = 2, 3, or 4) and 1-acetylimidazole. For 3- and 4-pyridylcarbinol, the 'open' macrocycle accelerates the acyl transfer reaction more than the condensed analogue and significantly more than the porphyrin monomer. In contrast, an allosteric effect was not observed for 2-pyridylcarbinol, which is expected to be a weaker binder and is unfavorably constrained inside the macrocyclic cavity.

  12. Comparative VOCs sensing performance for conducting polymer and porphyrin functionalized carbon nanotubes based sensors

    Science.gov (United States)

    Datta, Kunal; Rushi, Arti; Ghosh, Prasanta; Shirsat, Mahendra

    2018-05-01

    We report sensors for detection of ethyl alcohol, a prominent volatile organic compound (VOC). Single walled carbon nanotubes were selected as main sensing backbone. As efficiency of sensor is dependent upon the choice of sensing materials, the performances of conducting polymer and porphyrin based sensors were compared. Chemiresistive sensing modality was adopted to observe the performance of sensors. It has been found that porphyrin based sensor shows higher affinity towards ethyl alcohol.

  13. Bis-Porphyrin Racks with Space-Separated Co-Planar Porphyrin Rings

    Directory of Open Access Journals (Sweden)

    Martin R. Johnston

    2001-03-01

    Full Text Available A porphyrin appended norbornenyl building block 8 has been isolated and coupled, using a 1,3-dipolar ACE reaction, to yield bis-porphyrin compounds in which the porphyrin moietes are angled upward relative to the norbornane backbone.

  14. Synthesis and characterization of a novel meso-porphyrin and its metallo derivatives

    Directory of Open Access Journals (Sweden)

    Paulo Cesar Bega

    2014-02-01

    Full Text Available There has been a growing interest in the properties of substituted meso-tetraarylporphyrins and metallo porphyrins as catalysts for oxidation of hydrocarbons, oxygen detection, among others. This work describes the synthesis of a new porphyrin, 5,10,15,20-tetrakis(4-butoxy-3-methoxyphenylporphyrin, and its metallo complexes. Herein it was used a readily available reactant, vanillin, as starting material which was submitted to alkylation with n-bromobutane affording the synthetic precursor. The desired porphyrin was obtained by reacting the O-alkylated aldehyde with pyrrole in the presence of propionic acid (Alder-Longo method. The purified porphyrin was then subjected to the metallation process using iron (II and manganese (II salts. The synthesized compounds were characterized by IR, UV-Vis, NMR and EPR spectroscopy.

  15. Control of self-organizing nonlinear systems

    CERN Document Server

    Klapp, Sabine; Hövel, Philipp

    2016-01-01

    The book summarizes the state-of-the-art of research on control of self-organizing nonlinear systems with contributions from leading international experts in the field. The first focus concerns recent methodological developments including control of networks and of noisy and time-delayed systems. As a second focus, the book features emerging concepts of application including control of quantum systems, soft condensed matter, and biological systems. Special topics reflecting the active research in the field are the analysis and control of chimera states in classical networks and in quantum systems, the mathematical treatment of multiscale systems, the control of colloidal and quantum transport, the control of epidemics and of neural network dynamics.

  16. Feedback, Lineages and Self-Organizing Morphogenesis.

    Directory of Open Access Journals (Sweden)

    Sameeran Kunche

    2016-03-01

    Full Text Available Feedback regulation of cell lineage progression plays an important role in tissue size homeostasis, but whether such feedback also plays an important role in tissue morphogenesis has yet to be explored. Here we use mathematical modeling to show that a particular feedback architecture in which both positive and negative diffusible signals act on stem and/or progenitor cells leads to the appearance of bistable or bi-modal growth behaviors, ultrasensitivity to external growth cues, local growth-driven budding, self-sustaining elongation, and the triggering of self-organization in the form of lamellar fingers. Such behaviors arise not through regulation of cell cycle speeds, but through the control of stem or progenitor self-renewal. Even though the spatial patterns that arise in this setting are the result of interactions between diffusible factors with antagonistic effects, morphogenesis is not the consequence of Turing-type instabilities.

  17. Self-organizing physical fields and gravity

    International Nuclear Information System (INIS)

    Pestov, I.B.

    2009-01-01

    It is shown that the Theory of Self-Organizing Physical Fields provides the adequate and consistent consideration of the gravitational phenomena. The general conclusion lies in the fact that the essence of gravidynamics is the new field concept of time and the general covariant law of energy conservation which in particular means that dark energy is simply the energy of the gravitational field. From the natural geometrical laws of gravidynamics the dynamical equations of the gravitational field are derived. Two exact solutions of these equations are obtained. One of them represents a shock gravitational wave and the other represents the Universe filled up with the gravitational energy only. These solutions are compared with the Schwarzschild and Friedmann solutions in the Einstein general theory of relativity

  18. Feedback, Lineages and Self-Organizing Morphogenesis

    Science.gov (United States)

    Calof, Anne L.; Lowengrub, John S.; Lander, Arthur D.

    2016-01-01

    Feedback regulation of cell lineage progression plays an important role in tissue size homeostasis, but whether such feedback also plays an important role in tissue morphogenesis has yet to be explored. Here we use mathematical modeling to show that a particular feedback architecture in which both positive and negative diffusible signals act on stem and/or progenitor cells leads to the appearance of bistable or bi-modal growth behaviors, ultrasensitivity to external growth cues, local growth-driven budding, self-sustaining elongation, and the triggering of self-organization in the form of lamellar fingers. Such behaviors arise not through regulation of cell cycle speeds, but through the control of stem or progenitor self-renewal. Even though the spatial patterns that arise in this setting are the result of interactions between diffusible factors with antagonistic effects, morphogenesis is not the consequence of Turing-type instabilities. PMID:26989903

  19. Self-organized criticality and urban development

    Directory of Open Access Journals (Sweden)

    Michael Batty

    1999-01-01

    Full Text Available Urban society is undergoing as profound a spatial transformation as that associated with the emergence of the industrial city two centuries ago. To describe and measure this transition, we introduce a new theory based on the concept that large-scale, complex systems composed of many interacting elements, show a surprising degree of resilience to change, holding themselves at critical levels for long periods until conditions emerge which move the system, often abruptly, to a new threshold. This theory is called ‘self-organized criticality’; it is consistent with systems in which global patterns emerge from local action which is the hallmark of self-organization, and it is consistent with developments in system dynamics and their morphology which find expression in fractal geometry and weak chaos theory. We illustrate the theory using a unique space–time series of urban development for Buffalo, Western New York, which contains the locations of over one quarter of a million sites coded by their year of construction and dating back to 1773, some 60 years before the city began to develop. We measure the emergence and growth of the city using urban density functions from which measures of fractal dimension are used to construct growth paths of the way the city has grown to fill its region. These phase portraits suggest the existence of transitions between the frontier, the settled agricultural region, the centralized industrial city and the decentralized postindustrial city, and our analysis reveals that Buffalo has maintained itself at a critical threshold since the emergence of the automobile city some 70 years ago. Our implied speculation is: how long will this kind of urban form be maintained in the face of seemingly unstoppable technological change?

  20. Self-organized modularization in evolutionary algorithms.

    Science.gov (United States)

    Dauscher, Peter; Uthmann, Thomas

    2005-01-01

    The principle of modularization has proven to be extremely successful in the field of technical applications and particularly for Software Engineering purposes. The question to be answered within the present article is whether mechanisms can also be identified within the framework of Evolutionary Computation that cause a modularization of solutions. We will concentrate on processes, where modularization results only from the typical evolutionary operators, i.e. selection and variation by recombination and mutation (and not, e.g., from special modularization operators). This is what we call Self-Organized Modularization. Based on a combination of two formalizations by Radcliffe and Altenberg, some quantitative measures of modularity are introduced. Particularly, we distinguish Built-in Modularity as an inherent property of a genotype and Effective Modularity, which depends on the rest of the population. These measures can easily be applied to a wide range of present Evolutionary Computation models. It will be shown, both theoretically and by simulation, that under certain conditions, Effective Modularity (as defined within this paper) can be a selection factor. This causes Self-Organized Modularization to take place. The experimental observations emphasize the importance of Effective Modularity in comparison with Built-in Modularity. Although the experimental results have been obtained using a minimalist toy model, they can lead to a number of consequences for existing models as well as for future approaches. Furthermore, the results suggest a complex self-amplification of highly modular equivalence classes in the case of respected relations. Since the well-known Holland schemata are just the equivalence classes of respected relations in most Simple Genetic Algorithms, this observation emphasizes the role of schemata as Building Blocks (in comparison with arbitrary subsets of the search space).

  1. Porphyrin coordination polymer nanospheres and nanorods

    Science.gov (United States)

    Wang, Zhongchun; Shelnutt, John A.; Medforth, Craig J.

    2012-12-04

    A porphyrin coordination polymer nanostructure comprising a network of pyridyl porphyrin molecules and coordinating metal ions coordinatively bound through the pyridyl groups. In some embodiments, the porphyrins are metalloporphyrins. A variety of nanostructures are formed by the network polymer, including nanospheres, polygonal nanostructures, nanorods, and nanofibers, depending on a variety of factors including coordination metal ion, porphyrin type, metal of the metalloporphyrin, and degree of agitation during nanostructure formation. Reduction of coordinating metal ions may be used to form metal nanoparticles on the coordination polymer nanostructure.

  2. Subwavelength Microstructures Fabrication by Self-Organization Processes in Photopolymerizable Nanocomposite

    Directory of Open Access Journals (Sweden)

    I. Yu. Denisyuk

    2012-01-01

    Full Text Available This paper describes our research results on nanometers sizes subwavelength nanostructure fabrication by UV curing of special nanocomposite material with self-organization and light self-focusing effects. For this purpose, special UV curable nanocomposite material with a set of effects was developing: light self-focusing in the photopolymer with positive refractive index change, self-organization based on photo-induced nanoparticles transportation, and oxygen-based polymerization threshold. Both holographic and projection lithography writing methods application for microstructure making shows geometrical optical laws perturbation as result of nanocomposite self-organization effects with formation of nanometers-sized high-aspect-ratio structures. Obtained results will be useful for diffraction limit overcoming in projection lithography as well as for deep lithography technique.

  3. Photoluminescence and dynamics of excitation relaxation in graphene oxide-porphyrin nanorods composite

    International Nuclear Information System (INIS)

    Khenfouch, M.; Wéry, J.; Baïtoul, M.; Maaza, M.

    2014-01-01

    Generally, porphyrin nanostructured materials are known by playing many roles such as photoconductors, photovoltaics and capable of light induced charging. Also their combination with acceptors like graphene, the rising two dimension material, added exciting physical and chemical properties. In this work, Morphology, optical absorption and photoluminescence properties were investigated in order to elucidate the interaction between the few layered graphene oxide (FGO) and pophyrin nanorods. Reporting on the photoluminescence (PL) of both porphyrin nanorods and FGO/porphyrin nanorods composite, synthesized via a self-assembly method, we have experimentally demonstrated the generation of a new photoluminescence band giving rise to a white light. This luminescence was studied by the analysis of its origins and dynamics which show a huge change of exciton life time found to be longer after the interaction with graphene oxide (GO) sheets. -- Highlights: • We prepared FGO-porphyrin nanorods composite via a simple chemical method. • Luminescence properties were studied presenting the absorption, photoluminescence and dynamics measurements. • These results show the emission of a white light which we studied its emissions origins. • TEM images show FGO sheets decorated with porphyrin nanorods. • FGO had like effect an increase of the exciton lifetime in porphyrin nanorods

  4. Photoluminescence and dynamics of excitation relaxation in graphene oxide-porphyrin nanorods composite

    Energy Technology Data Exchange (ETDEWEB)

    Khenfouch, M., E-mail: khenfouch@yahoo.fr [University Sidi Mohamed Ben Abdellah, Faculty of Sciences Dhar el Mahraz, Laboratory of Solid State Physics, Group of Polymers and Nanomaterials, BP 1796 Atlas, Fez 30 000 (Morocco); iThemba LABS-National Research Foundation of South Africa, Old Faure Road, PO Box 722, Somerset West 7129, Western Cape Province (South Africa); UNESCO-UNISA Africa Chair in Nanosciences-Nanotechnology, College of Graduate Studies, University of South Africa, Muckleneuk ridge, PO Box 392, Pretoria (South Africa); Wéry, J. [Institut des Matériaux Jean Rouxel, Nantes, 2 rue de la Houssinière, BP 32229, 44322 Nantes, Cedex 3 (France); Baïtoul, M., E-mail: baitoul@yahoo.fr [University Sidi Mohamed Ben Abdellah, Faculty of Sciences Dhar el Mahraz, Laboratory of Solid State Physics, Group of Polymers and Nanomaterials, BP 1796 Atlas, Fez 30 000 (Morocco); Maaza, M. [iThemba LABS-National Research Foundation of South Africa, Old Faure Road, PO Box 722, Somerset West 7129, Western Cape Province (South Africa); UNESCO-UNISA Africa Chair in Nanosciences-Nanotechnology, College of Graduate Studies, University of South Africa, Muckleneuk ridge, PO Box 392, Pretoria (South Africa)

    2014-01-15

    Generally, porphyrin nanostructured materials are known by playing many roles such as photoconductors, photovoltaics and capable of light induced charging. Also their combination with acceptors like graphene, the rising two dimension material, added exciting physical and chemical properties. In this work, Morphology, optical absorption and photoluminescence properties were investigated in order to elucidate the interaction between the few layered graphene oxide (FGO) and pophyrin nanorods. Reporting on the photoluminescence (PL) of both porphyrin nanorods and FGO/porphyrin nanorods composite, synthesized via a self-assembly method, we have experimentally demonstrated the generation of a new photoluminescence band giving rise to a white light. This luminescence was studied by the analysis of its origins and dynamics which show a huge change of exciton life time found to be longer after the interaction with graphene oxide (GO) sheets. -- Highlights: • We prepared FGO-porphyrin nanorods composite via a simple chemical method. • Luminescence properties were studied presenting the absorption, photoluminescence and dynamics measurements. • These results show the emission of a white light which we studied its emissions origins. • TEM images show FGO sheets decorated with porphyrin nanorods. • FGO had like effect an increase of the exciton lifetime in porphyrin nanorods.

  5. Self-organized internal architectures of chiral micro-particles

    International Nuclear Information System (INIS)

    Provenzano, Clementina; Mazzulla, Alfredo; Desiderio, Giovanni; Pagliusi, Pasquale; De Santo, Maria P.; Cipparrone, Gabriella; Perrotta, Ida

    2014-01-01

    The internal architecture of polymeric self-assembled chiral micro-particles is studied by exploring the effect of the chirality, of the particle sizes, and of the interface/surface properties in the ordering of the helicoidal planes. The experimental investigations, performed by means of different microscopy techniques, show that the polymeric beads, resulting from light induced polymerization of cholesteric liquid crystal droplets, preserve both the spherical shape and the internal self-organized structures. The method used to create the micro-particles with controlled internal chiral architectures presents great flexibility providing several advantages connected to the acquired optical and photonics capabilities and allowing to envisage novel strategies for the development of chiral colloidal systems and materials

  6. Two-dimensional charge transport in self-organized, high-mobility conjugated polymers

    DEFF Research Database (Denmark)

    Sirringhaus, H.; Brown, P.J.; Friend, R.H.

    1999-01-01

    Self-organization in many solution-processed, semiconducting conjugated polymers results in complex microstructures, in which ordered microcrystalline domains are embedded in an amorphous matrix(I). This has important consequences for electrical properties of these materials: charge transport...... of the ordered microcrystalline domains in the conjugated polymer poly(3-hexylthiophene), P3HT, Self-organization in P3HT results in a lamella structure with two-dimensional conjugated sheets formed by interchain stacking. We find that, depending on processing conditions, the lamellae can adopt two different...... of polymer transistors in logic circuits(5) and active-matrix displays(4,6)....

  7. Nanostructural self-organization and dynamic adaptation of metal-polymer tribosystems

    Science.gov (United States)

    Mashkov, Yu. K.

    2017-02-01

    The results of investigating the effect of nanosize modifiers of a polymer matrix on the nanostructural self-organization of polymer composites and dynamic adaptation of metal-polymer tribosystems, which considerably affect the wear resistance of polymer composite materials, have been analyzed. It has been shown that the physicochemical nanostructural self-organization processes are developed in metal-polymer tribosystems with the formation of thermotropic liquid-crystal structures of the polymer matrix, followed by the transition of the system to the stationary state with a negative feedback that ensures dynamic adaptation of the tribosystem to given operating conditions.

  8. Self-organized Segregation on the Grid

    Science.gov (United States)

    Omidvar, Hamed; Franceschetti, Massimo

    2018-02-01

    We consider an agent-based model with exponentially distributed waiting times in which two types of agents interact locally over a graph, and based on this interaction and on the value of a common intolerance threshold τ , decide whether to change their types. This is equivalent to a zero-temperature ising model with Glauber dynamics, an asynchronous cellular automaton with extended Moore neighborhoods, or a Schelling model of self-organized segregation in an open system, and has applications in the analysis of social and biological networks, and spin glasses systems. Some rigorous results were recently obtained in the theoretical computer science literature, and this work provides several extensions. We enlarge the intolerance interval leading to the expected formation of large segregated regions of agents of a single type from the known size ɛ >0 to size ≈ 0.134. Namely, we show that for 0.433sites can be observed within any sufficiently large region of the occupied percolation cluster. The exponential bounds that we provide also imply that complete segregation, where agents of a single type cover the whole grid, does not occur with high probability for p=1/2 and the range of intolerance considered.

  9. Characterization of functionalised porphyrin films using synchrotron radiation

    International Nuclear Information System (INIS)

    Arima, V.; Matino, F.; Thompson, J.; Del Sole, R.; Mele, G.; Vasapollo, G.; Cingolani, R.; Rinaldi, R.; Blyth, R.I.R.

    2005-01-01

    Porphyrins and C 60 are strategic materials for the fabrication of nanoscale molecular devices by virtue of their optical, photo-electro-chemical and chemical properties. We have developed procedures to immobilise cobalt tetra-butyl-phenyl porphyrins (CoTBPPs) on gold surfaces via ligation to self-assembled monolayers of aromatic aminothiophenols (4-ATP). We have used synchrotron radiation photoemission and near-edge X-ray absorption, NEXAFS, to characterise such films, both in their native state, and with ligated fulleropyrrolidines N-methyl-2-(p-pyridyl)-3,4-fulleropyrrolidine (Py-C 60 ), forming charge-separation complexes which may have applications in solar cells. While photoemission spectra appear dominated by the individual CoTBPP and Py-C 60 components, we observe an apparent signature of charge separation in fulleropyrrolidine NEXAFS spectra

  10. Characterization of functionalised porphyrin films using synchrotron radiation

    Energy Technology Data Exchange (ETDEWEB)

    Arima, V. [National Nanotechnology Laboratory of INFM, Distretto Tecnologico ISUFI, Universita di Lecce Via Arnesano, 73100 Lecce (Italy)]. E-mail: valentina.arima@unile.it; Matino, F. [National Nanotechnology Laboratory of INFM, Distretto Tecnologico ISUFI, Universita di Lecce Via Arnesano, 73100 Lecce (Italy); Thompson, J. [National Nanotechnology Laboratory of INFM, Distretto Tecnologico ISUFI, Universita di Lecce Via Arnesano, 73100 Lecce (Italy); Del Sole, R. [Dipartimento di Ingegneria dell' Innovazione, Universita di Lecce, via per Arnesano, 73100 Lecce (Italy); Mele, G. [Dipartimento di Ingegneria dell' Innovazione, Universita di Lecce, via per Arnesano, 73100 Lecce (Italy); Vasapollo, G. [Dipartimento di Ingegneria dell' Innovazione, Universita di Lecce, via per Arnesano, 73100 Lecce (Italy); Cingolani, R. [National Nanotechnology Laboratory of INFM, Distretto Tecnologico ISUFI, Universita di Lecce Via Arnesano, 73100 Lecce (Italy); Rinaldi, R. [National Nanotechnology Laboratory of INFM, Distretto Tecnologico ISUFI, Universita di Lecce Via Arnesano, 73100 Lecce (Italy); Blyth, R.I.R. [National Nanotechnology Laboratory of INFM, Distretto Tecnologico ISUFI, Universita di Lecce Via Arnesano, 73100 Lecce (Italy)

    2005-07-30

    Porphyrins and C{sub 60} are strategic materials for the fabrication of nanoscale molecular devices by virtue of their optical, photo-electro-chemical and chemical properties. We have developed procedures to immobilise cobalt tetra-butyl-phenyl porphyrins (CoTBPPs) on gold surfaces via ligation to self-assembled monolayers of aromatic aminothiophenols (4-ATP). We have used synchrotron radiation photoemission and near-edge X-ray absorption, NEXAFS, to characterise such films, both in their native state, and with ligated fulleropyrrolidines N-methyl-2-(p-pyridyl)-3,4-fulleropyrrolidine (Py-C{sub 60}), forming charge-separation complexes which may have applications in solar cells. While photoemission spectra appear dominated by the individual CoTBPP and Py-C{sub 60} components, we observe an apparent signature of charge separation in fulleropyrrolidine NEXAFS spectra.

  11. Synthesis and anion binding properties of porphyrins and related compounds

    KAUST Repository

    Figueira, Flávio

    2016-12-02

    Over the last two decades the preparation of pyrrole-based receptors for anion recognition has attracted considerable attention. In this regard porphyrins, phthalocyanines and expanded porphyrins have been used as strong and selective receptors while the combination of those with different techniques and materials can boost their applicability in different applications as chemosensors and extracting systems. Improvements in the field, including the synthesis of this kind of compounds, can contribute to the development of efficient, cheap, and easy-to-prepare anion receptors. Extensive efforts have been made to improve the affinity and selectivity of these compounds and the continuous expansion of related research makes this chemistry even more promising. In this review, we summarize the most recent developments in anion binding studies while outlining the strategies that may be used to synthesize and functionalize these type of macrocycles. © 2016 World Scientific Publishing Company.

  12. The role of hierarchy in self-organizing systems

    NARCIS (Netherlands)

    Ollfen, van W.; Romme, A.G.L.

    1995-01-01

    This paper discusses the role of hierarchy in human systems. Two kinds of self-organizing processes are distinguished: conservative and dissipative self-organization. The former leads to rather stable, specialistic systems, whereas the latter leads to continuously changing generalistic systems. When

  13. Self-organized quantum rings : Physical characterization and theoretical modeling

    NARCIS (Netherlands)

    Fomin, V.M.; Gladilin, V.N.; Devreese, J.T.; Koenraad, P.M.; Fomin, V.M.

    2014-01-01

    An adequate modeling of the self-organized quantum rings is possible only on the basis of the modern characterization of those nanostructures.We discuss an atomic-scale analysis of the indium distribution of self-organized InGaAs quantum rings (QRs). The analysis of the shape, size and composition

  14. Enabling Self-Organization in Embedded Systems with Reconfigurable Hardware

    Directory of Open Access Journals (Sweden)

    Christophe Bobda

    2009-01-01

    Full Text Available We present a methodology based on self-organization to manage resources in networked embedded systems based on reconfigurable hardware. Two points are detailed in this paper, the monitoring system used to analyse the system and the Local Marketplaces Global Symbiosis (LMGS concept defined for self-organization of dynamically reconfigurable nodes.

  15. Self-organizing networks for extracting jet features

    International Nuclear Information System (INIS)

    Loennblad, L.; Peterson, C.; Pi, H.; Roegnvaldsson, T.

    1991-01-01

    Self-organizing neural networks are briefly reviewed and compared with supervised learning algorithms like back-propagation. The power of self-organization networks is in their capability of displaying typical features in a transparent manner. This is successfully demonstrated with two applications from hadronic jet physics; hadronization model discrimination and separation of b.c. and light quarks. (orig.)

  16. Natural hazards and self-organized criticality

    International Nuclear Information System (INIS)

    Krenn, R.

    2012-01-01

    Several natural hazards exhibit power-law behavior on their frequency-size distributions. Self-organized criticality has become a promising candidate that could offer a more in-depth understanding of the origin of temporal and spatial scaling in dissipative nonequilibrium systems. The outcomes of this thesis are presented in three scientific papers followed by a concluding summary and an appendix.In paper (A) we present a semi-phenomenological approach to explain the complex scaling behavior of the Drossel-Schwabl forest-fire model (DS-FFM) in two dimensions. We derive the scaling exponent solely from the scaling exponent of the clusters' accessible perimeter. Furthermore, the unusual transition to an exponential decay is explained both qualitatively and quantitatively. The exponential decay itself could be reproduced at least qualitatively. In paper (B) we extend the DS-FFM towards anthropogenic ignition factors. The main outcomes are an increase of the scaling exponent with decreasing lightning probability as well as a splitting of the partial frequency-size distributions of lightning induced and man made fires. Lightning is identified as the dominant mechanism in the regime of the largest fires. The results could be validated through an analysis of the Canadian Large Fire Database.In paper (C) we obtain an almost complete theory of the Olami-Feder-Christensen (OFC) model's complex spatio-temporal behavior. Synchronization pushes the system towards a critical state and generates the Gutenberg-Richter law. Desynchronization prevents the system from becoming overcritical and generates foreshocks and aftershocks. Our approach also provides a simple explanation of Omori's law. Beyond this, it explains the phenomena of foreshock migration and aftershock diffusion and the occurrence of large earthquakes without any foreshocks. A novel integer algorithm for the numerics is presented in appendix (A).(author) [de

  17. Novel drug delivery strategies for porphyrins and porphyrin precursors

    Science.gov (United States)

    Morrow, D. I. J.; Donnelly, R. F.

    2009-06-01

    superficial lesions, such as actinic keratosis. In addition, photodynamic antimicrobial chemotherapy (PACT) is attracting increasing interest for the treatment of infection. However, delivery strategies for topical PDT and PACT are still based on application of rather simplistic cream and solution formulations, with little consideration given to thermodynamics, targeting or the physicochemical properties of the active agent. Purpose-designed dosage forms for topical delivery of aminolevulinic acid or its esters include creams containing penetration enhancers and/or iron chelators, pressure sensitive patches and bioadhesive patches. Such systems aim to enhance drug delivery across the stratum corneum and keratinised debris overlying neoplastic lesions and improve subsequent protoporphyrin IX (PpIX) production. The alternative to using porphyrin precursors is the use of pre-formed photosensitisers. However, owing to their relatively high molecular weights, conventional topical application is not appropriate. Innovative strategies, such as the use of needle-free injections and microneedle arrays, bypass the stratum corneum, enabling rapid and targeted delivery not only porphyrin precursors but also pre-formed photosensitisers. This presentation will review drug delivery work published to date in the fields of PDT and PACT. In addition, the benefits of employing the latest advances in pharmaceutical technology will be highlighted.

  18. The concept of self-organizing systems. Why bother?

    Science.gov (United States)

    Elverfeldt, Kirsten v.; Embleton-Hamann, Christine; Slaymaker, Olav

    2016-04-01

    Complexity theory and the concept of self-organizing systems provide a rather challenging conceptual framework for explaining earth systems change. Self-organization - understood as the aggregate processes internal to an environmental system that lead to a distinctive spatial or temporal organization - reduces the possibility of implicating a specific process as being causal, and it poses some restrictions on the idea that external drivers cause a system to change. The concept of self-organizing systems suggests that many phenomena result from an orchestration of different mechanisms, so that no causal role can be assigned to an individual factor or process. The idea that system change can be due to system-internal processes of self-organization thus proves a huge challenge to earth system research, especially in the context of global environmental change. In order to understand the concept's implications for the Earth Sciences, we need to know the characteristics of self-organizing systems and how to discern self-organizing systems. Within the talk, we aim firstly at characterizing self-organizing systems, and secondly at highlighting the advantages and difficulties of the concept within earth system sciences. The presentation concludes that: - The concept of self-organizing systems proves especially fruitful for small-scale earth surface systems. Beach cusps and patterned ground are only two of several other prime examples of self-organizing earth surface systems. They display characteristics of self-organization like (i) system-wide order from local interactions, (ii) symmetry breaking, (iii) distributed control, (iv) robustness and resilience, (v) nonlinearity and feedbacks, (vi) organizational closure, (vii) adaptation, and (viii) variation and selection. - It is comparatively easy to discern self-organization in small-scale systems, but to adapt the concept to larger scale systems relevant to global environmental change research is more difficult: Self-organizing

  19. Fabrication Of Buried Self-Organized Stripes In The Ni/C60 Composite

    Czech Academy of Sciences Publication Activity Database

    Vacík, Jiří; Lavrentiev, Vasyl; Horák, Pavel; Narumi, K.

    2011-01-01

    Roč. 1336, č. 1 (2011), s. 299-302 ISSN 1551-7616 R&D Projects: GA AV ČR(CZ) KAN400480701; GA AV ČR(CZ) IAA400320901; GA ČR GA106/09/1264; GA MŠk(CZ) LC06041 Institutional research plan: CEZ:AV0Z10480505 Keywords : Nickel * Fullerenes * Composite materials * Self-organization Subject RIV: JJ - Other Materials

  20. Surface self-organization in multilayer film coatings

    Science.gov (United States)

    Shuvalov, Gleb M.; Kostyrko, Sergey A.

    2017-12-01

    It is a recognized fact that during film deposition and subsequent thermal processing the film surface evolves into an undulating profile. Surface roughness affects many important aspects in the engineering application of thin film materials such as wetting, heat transfer, mechanical, electromagnetic and optical properties. To accurately control the morphological surface modifications at the micro- and nanoscale and improve manufacturing techniques, we design a mathematical model of the surface self-organization process in multilayer film materials. In this paper, we consider a solid film coating with an arbitrary number of layers under plane strain conditions. The film surface has a small initial perturbation described by a periodic function. It is assumed that the evolution of the surface relief is governed by surface and volume diffusion. Based on Gibbs thermodynamics and linear theory of elasticity, we present a procedure for constructing a governing equation that gives the amplitude change of the surface perturbation with time. A parametric study of the evolution equation leads to the definition of a critical undulation wavelength that stabilizes the surface. As a numerical result, the influence of geometrical and physical parameters on the morphological stability of an isotropic two-layered film coating is analyzed.

  1. NANOSTRUCTURED TiO2 SENSITIZED WITH PORPHYRINS FOR SOLAR WATER-SPLITTING

    Directory of Open Access Journals (Sweden)

    MARCELA-CORINA ROŞU

    2011-03-01

    Full Text Available Nanostructured TiO2 sensitized with porphyrins for Solar water-splitting.The production of hydrogen from water using solar light is very promising for generations of an ecologically pure carrier contributing to a clean, sustainable and renewable energy system. The selection of specific photocatalyst material for hydrogen production in photoelectrochemical cells (PECs is based on some important characteristics of semiconductor, such as photo-corrosion and chemical corrosion stability, photocatalytic potential, high sensitivity for UV-visible light. In the present paper, different nanocrystalline TiO2 photoanodes have been prepared via wet-chemical techniques followed by annealing treatment and sensitized with porphyrins and supramolecular complexes of porphyrins. The so obtained photocatalysts were characterized with UV-VIS absorption spectroscopy and spectrofluorimetry. The purpose of these experiments is to show if the prepared materials possess the necessary photocatalytic characteristics and if they can be used with success in H2 production from water decomposition in PECs.

  2. Electronic self-organization in layered transition metal dichalcogenides

    Energy Technology Data Exchange (ETDEWEB)

    Ritschel, Tobias

    2015-10-30

    The interplay between different self-organized electronically ordered states and their relation to unconventional electronic properties like superconductivity constitutes one of the most exciting challenges of modern condensed matter physics. In the present thesis this issue is thoroughly investigated for the prototypical layered material 1T-TaS{sub 2} both experimentally and theoretically. At first the static charge density wave order in 1T-TaS{sub 2} is investigated as a function of pressure and temperature by means of X-ray diffraction. These data indeed reveal that the superconductivity in this material coexists with an inhomogeneous charge density wave on a macroscopic scale in real space. This result is fundamentally different from a previously proposed separation of superconducting and insulating regions in real space. Furthermore, the X-ray diffraction data uncover the important role of interlayer correlations in 1T-TaS{sub 2}. Based on the detailed insights into the charge density wave structure obtained by the X-ray diffraction experiments, density functional theory models are deduced in order to describe the electronic structure of 1T-TaS{sub 2} in the second part of this thesis. As opposed to most previous studies, these calculations take the three-dimensional character of the charge density wave into account. Indeed the electronic structure calculations uncover complex orbital textures, which are interwoven with the charge density wave order and cause dramatic differences in the electronic structure depending on the alignment of the orbitals between neighboring layers. Furthermore, it is demonstrated that these orbital-mediated effects provide a route to drive semiconductor-to-metal transitions with technologically pertinent gaps and on ultrafast timescales. These results are particularly relevant for the ongoing development of novel, miniaturized and ultrafast devices based on layered transition metal dichalcogenides. The discovery of orbital textures

  3. Photoexcited iron porphyrin as biomimetic catalysts

    International Nuclear Information System (INIS)

    Bartocci, C.; Maldotti, A.; Varani, G.; Consiglio Nazionale delle Ricerche, Ferrara

    1996-01-01

    Photoexcited iron porphyrins can be of some interest in both fine and industrial chemistry in view of the preparation of new efficient biomimetic catalysts, working with high selectivity under mild temperature and pressure

  4. Photoluminescence of self-organized perylene bisimide polymers

    NARCIS (Netherlands)

    Neuteboom, E.E.; Meskers, S.C.J.; Meijer, E.W.; Janssen, R.A.J.

    2004-01-01

    Three polymers consisting of alternating perylene bisimide chromophores and flexible polytetrahydrofuran segments of different length have been studied using absorption and (time-resolved) photoluminescence spectroscopy. In o-dichlorobenzene, the chromophores self organize to form H-like aggregates.

  5. Self-organizing of critical state in granulated superconductors

    International Nuclear Information System (INIS)

    Ginzburg, S.L.; Savitskaya, N.E.

    2000-01-01

    Critical state in granulated superconductors was studied on the basis of two mathematical models - the system of differential equations for calibration and invariant difference of phases and a simplified model describing the system of associated images and equivalent to the standard models to study self-organizing criticality. The critical state of granulated superconductors in all studied cases was shown to be self-organized. Besides, it is shown that the applied models are practically equivalent ones, that is they both show similar critical behavior and lead to coincidence of noncritical phenomena. For the first time one showed that the occurrence of self-organized critically within the system of nonlinear differential equations and its equivalence to self-organized critically in the standard models [ru

  6. Complexity in plasma: From self-organization to geodynamo

    International Nuclear Information System (INIS)

    Sato, T.

    1996-01-01

    A central theme of open-quote open-quote Complexity close-quote close-quote is the question of the creation of ordered structure in nature (self-organization). The assertion is made that self-organization is governed by three key processes, i.e., energy pumping, entropy expulsion and nonlinearity. Extensive efforts have been done to confirm this assertion through computer simulations of plasmas. A system exhibits markedly different features in self-organization, depending on whether the energy pumping is instantaneous or continuous, or whether the produced entropy is expulsed or reserved. The nonlinearity acts to bring a nonequilibrium state into a bifurcation, thus resulting in a new structure along with an anomalous entropy production. As a practical application of our grand view of self-organization a preferential generation of a dipole magnetic field is successfully demonstrated. copyright 1996 American Institute of Physics

  7. Self-Organization in Embedded Real-Time Systems

    CERN Document Server

    Brinkschulte, Uwe; Rettberg, Achim

    2013-01-01

    This book describes the emerging field of self-organizing, multicore, distributed and real-time embedded systems.  Self-organization of both hardware and software can be a key technique to handle the growing complexity of modern computing systems. Distributed systems running hundreds of tasks on dozens of processors, each equipped with multiple cores, requires self-organization principles to ensure efficient and reliable operation. This book addresses various, so-called Self-X features such as self-configuration, self-optimization, self-adaptation, self-healing and self-protection. Presents open components for embedded real-time adaptive and self-organizing applications; Describes innovative techniques in: scheduling, memory management, quality of service, communications supporting organic real-time applications; Covers multi-/many-core embedded systems supporting real-time adaptive systems and power-aware, adaptive hardware and software systems; Includes case studies of open embedded real-time self-organizi...

  8. Self-organizing maps: A tool to ascertain taxonomic relatedness ...

    Indian Academy of Sciences (India)

    MADHU

    what is known as numerical taxonomy (Garrity et al. 2001). ... Curvilinear component analysis; self-organizing maps; principal component analysis. Abbreviations used: ... This tool undergoes unsupervised learning and is particularly useful in ...

  9. Modelling the self-organization and collapse of complex networks

    Indian Academy of Sciences (India)

    Modelling the self-organization and collapse of complex networks. Sanjay Jain Department of Physics and Astrophysics, University of Delhi Jawaharlal Nehru Centre for Advanced Scientific Research, Bangalore Santa Fe Institute, Santa Fe, New Mexico.

  10. Magnetic interactions in iron (III) porphyrin chlorides

    International Nuclear Information System (INIS)

    Ernst, J.; Subramanian, Japyesan; Fuhrhop, J.H.

    1977-01-01

    Intermolecular exchange interactions in iron(III) porphyrin chlorides (porphyrin = OEP, proto, TPP) have been studied by X-ray structure, EPR and magnetic susceptibility studies. The crystal structure of Fe(III)OEP-Cl was found to be different from that of the other two. Different types of exchange broadened EPR-spectra are obtained which are attributable to the arrangement in the crystals. The EPR results correlate well with magnetic susceptibility data. (orig.) [de

  11. Urinary porphyrin excretion in hepatitis C infection

    OpenAIRE

    Vogeser, Michael; Jacob, Karl; Zachoval, Reinhart

    1999-01-01

    A high prevalence of hepatitis C virus infection in porphyria cutanea tarda in some populations suggests a close link between viral hepatitis and alteration of porphyrin metabolism. Moreover, there is evidence of a role of porphyrinopathies in hepatocarcinogenesis. The aim of our study was to obtain data on the prevalence and patterns of heme metabolism alterations in patients with chronic hepatitis C virus infection. Urinary porphyrin excretion was prospectively studied in 100 consecutive ou...

  12. Innovative Mechanism of Rural Organization Based on Self-Organization

    OpenAIRE

    Wang, Xing jin; Gao, Bing

    2011-01-01

    The paper analyzes the basic situation for the formation of innovative rural organizations with the form of self-organization; revels the features of self-organization, including the four aspects of openness of rural organization, innovation of rural organization is far away from equilibrium, the non-linear response mechanism of rural organization innovation and the random rise and fall of rural organization innovation. The evolution mechanism of rural organization innovation is reveled accor...

  13. Extending Particle Swarm Optimisers with Self-Organized Criticality

    DEFF Research Database (Denmark)

    Løvbjerg, Morten; Krink, Thiemo

    2002-01-01

    Particle swarm optimisers (PSOs) show potential in function optimisation, but still have room for improvement. Self-organized criticality (SOC) can help control the PSO and add diversity. Extending the PSO with SOC seems promising reaching faster convergence and better solutions.......Particle swarm optimisers (PSOs) show potential in function optimisation, but still have room for improvement. Self-organized criticality (SOC) can help control the PSO and add diversity. Extending the PSO with SOC seems promising reaching faster convergence and better solutions....

  14. On micro-scale self-organization in a plasma

    International Nuclear Information System (INIS)

    Maluckov, A.; Jovanovic, M.S.; Skoric, M.M.; Sato, T.

    1998-01-01

    We concentrate on a nonlinear saturation of a stimulated Raman backscattering in an open convective weakly confined model in the context of micro-kinetic scale self-organization in plasmas. The results have led to an assertion that a long-time nonlinear saturation in an open SRBS model with phenomenological effects of anomalous dissipation, plasma heating and subsequent entropy expulsion, reveals a generic interrelation of self-organization at wave-fluid (macro) and particle-kinetic (micro) levels. (author)

  15. Optical electronics self-organized integration and applications

    CERN Document Server

    Yoshimura, Tetsuzo

    2012-01-01

    IntroductionFrom Electronics to Optical ElectronicsAnalysis Tools for Optical CircuitsSelf-Organized Optical Waveguides: Theoretical AnalysisSelf-Organized Optical Waveguides: Experimental DemonstrationsOptical Waveguide Films with Vertical Mirrors 3-D Optical Circuits with Stacked Waveguide Films Heterogeneous Thin-Film Device IntegrationOptical Switches OE Hardware Built by Optical ElectronicsIntegrated Solar Energy Conversion SystemsFuture Challenges.

  16. Photosensitization of liposomes by porphyrins

    Energy Technology Data Exchange (ETDEWEB)

    Grossweiner, L I; Goyal, G C

    1984-01-01

    Lipid peroxidation was photosensitized in egg phosphatidylcholine (EPC) liposomes by hematoporphyrin (HP), hematoporphyrin derivative (HpD) and uroporphyrin I (Uro-I). Photosensitization by HP was type II via singlet oxygen (/sup 1/O/sub 2/) for the monomeric and dimeric states and type I for aggregated HP. Uro-I was an efficient type II /sup 1/O/sub 2/ photosensitizer. The HpD fraction enriched in the active biological component (HpD-A) was a type II /sup 1/O/sub 2/ photosensitizer at high and low concentrations. The spectral differences between HpD-A in buffer and solubilized in small EPC liposomes are attributed to a conformation change of a key dimer constituent from a folded to a planar geometry. The implications of the results for the action mechanism in photoradiation therapy of tumors with these porphyrins are discussed. 73 references, 1 figure, 5 tables.

  17. Emergence or self-organization?: Look to the soil population.

    Science.gov (United States)

    Addiscott, Tom

    2011-07-01

    EMERGENCE IS NOT WELL DEFINED, BUT ALL EMERGENT SYSTEMS HAVE THE FOLLOWING CHARACTERISTICS: the whole is more than the sum of the parts, they show bottom-up rather top-down organization and, if biological, they involve chemical signaling. Self-organization can be understood in terms of the second and third stages of thermodynamics enabling these stages used as analogs of ecosystem functioning. The second stage system was suggested earlier to provide a useful analog of the behavior of natural and agricultural ecosystems subjected to perturbations, but for this it needs the capacity for self-organization. Considering the hierarchy of the ecosystem suggests that this self-organization is provided by the third stage, whose entropy maximization acts as an analog of that of the soil population when it releases small molecules from much larger molecules in dead plant matter. This it does as vigorously as conditions allow. Through this activity, the soil population confers self-organization at both the ecosystem and the global level. The soil population has been seen as both emergent and self-organizing, supporting the suggestion that the two concepts are are so closely linked as to be virtually interchangeable. If this idea is correct one of the characteristics of a biological emergent system seems to be the ability to confer self-organization on an ecosystem or other entity which may be larger than itself. The beehive and the termite colony are emergent systems which share this ability.

  18. Electron Transport through Porphyrin Molecular Junctions

    Science.gov (United States)

    Zhou, Qi

    The goal of this work is to study the properties that would affect the electron transport through a porphyrin molecular junction. This work contributes to the field of electron transport in molecular junctions in the following 3 aspects. First of all, by carrying out experiments comparing the conductance of the iron (III) porphyrin (protected) and the free base porphyrin (protected), it is confirmed that the molecular energy level broadening and shifting occurs for porphyrin molecules when coupled with the metal electrodes, and this level broadening and shifting plays an important role in the electron transport through molecular junctions. Secondly, by carrying out an in-situ deprotection of the acetyl-protected free base porphyrin molecules, it is found out that the presence of acetyl groups reduces the conductance. Thirdly, by incorporating the Matrix-assisted laser desorption/ionization (MALDI) spectrum and the in-situ deprotection prior to formation of molecular junctions, it allows a more precise understanding of the molecules involved in the formation of molecular junctions, and therefore allows an accurate analysis of the conductance histogram. The molecules are prepared by self-assembly and the junctions are formed using a Scanning Tunneling Microscopy (STM) molecular break junction technique. The porphyrin molecules are characterized by MALDI in solution before self-assembly to a gold/mica substrate. The self-assembled monolayers (SAMs) of porphyrins on gold are characterized by Ultraviolet-visible (UV-Vis) reflection spectroscopy to confirm that the molecules are attached to the substrate. The SAMs are then characterized by Angle-Resolved X-ray photoelectron spectroscopy (ARXPS) to determine the thickness and the average molecular orientation of the molecular layer. The electron transport is measured by conductance-displacement (G-S) experiments under a given bias (-0.4V). The conductance value of a single molecule is identified by a statistical analysis

  19. A panchromatic anthracene-fused porphyrin sensitizer for dye-sensitized solar cells

    KAUST Repository

    Ball, James M.

    2012-01-01

    The development of ruthenium-free sensitizers which absorb light over a broad range of the solar spectrum is important for improving the power conversion efficiency of dye-sensitized solar cells. Here we study three chemically tailored porphyrin-based dyes. We show that by fusing the porphyrin core to an anthracene unit, we can extend the conjugation length and lower the optical gap, shifting the absorption spectrum into the near-infrared (NIR). All three dyes were tested in dye-sensitized solar cells, using both titanium dioxide and tin dioxide as the electron-transport material. Solar cells incorporating the anthracene-fused porphyrin dye exhibit photocurrent collection at wavelengths up to about 1100 nm, which is the longest reported for a porphyrin-based system. Despite extending the photon absorption bandwidth, device efficiency is found to be low, which is a common property of cells based on porphyrin dyes with NIR absorption. We show that in the present case the efficiency is reduced by inefficient electron injection into the oxide, as opposed to dye regeneration, and highlight some important design considerations for panchromatic sensitizers. © 2012 The Royal Society of Chemistry.

  20. Emission properties of porphyrin compounds in new polymeric PS:CBP host

    Science.gov (United States)

    Jafari, Mohammad Reza; Bahrami, Bahram

    2015-06-01

    In this study, a device with fundamental structure of ITO/PEDOT:PSS (60 nm)/PS:CBP (70 nm)/Al (150 nm) was fabricated. The electroluminescence spectrum of device designated a red shift rather than PS:CBP photoluminescence spectra. It can be suggested that the electroplex emission occurs at PS:CBP interface. By following this step, red light-emitting devices using porphyrin compounds as a red dopant in a new host material PS:CBP with a configuration of ITO/PEDOT:PSS (60 nm)/PS:CBP:porphyrin compounds(70 nm)/Al (150 nm) have been fabricated and investigated. The electroluminescent spectra of the porphyrin compounds were red-shifted as compared with the PS:CBP blend. OLED devices based on doping 3,4PtTPP and TPPNO2 in PS:CBP showed purer red emission compared with ZnTPP and CoTPP doped devices. We believe that the electroluminescence performance of OLED devices based on porphyrin compounds depends on overlaps between the absorption of the porphyrin compounds and the emission of PS:CBP.

  1. Porphyrin amino acids-amide coupling, redox and photophysical properties of bis(porphyrin) amides.

    Science.gov (United States)

    Melomedov, Jascha; Wünsche von Leupoldt, Anica; Meister, Michael; Laquai, Frédéric; Heinze, Katja

    2013-07-14

    New trans-AB2C meso-substituted porphyrin amino acid esters with meso-substituents of tunable electron withdrawing power (B = mesityl, 4-C6H4F, 4-C6H4CF3, C6F5) were prepared as free amines 3a-3d, as N-acetylated derivatives Ac-3a-Ac-3d and corresponding zinc(II) complexes Zn-Ac-3a-Zn-Ac-3d. Several amide-linked bis(porphyrins) with a tunable electron density at each porphyrin site were obtained from the amino porphyrin precursors by condensation reactions (4a-4d) and mono- and bis(zinc(II)) complexes Zn(2)-4d and Zn(1)Zn(2)-4d were prepared. The electronic interaction between individual porphyrin units in bis(porphyrins) 4 is probed by electrochemical experiments (CV, EPR), electronic absorption spectroscopy, steady-state and time-resolved fluorescence spectroscopy in combination with DFT/PCM calculations on diamagnetic neutral bis(porphyrins) 4 and on respective charged mixed-valent radicals 4(+/-). The interaction via the -C6H4-NHCO-C6H4- bridge, the site of oxidation and reduction and the lowest excited singlet state S1, is tuned by the substituents on the individual porphyrins and the metalation state.

  2. Synthesis and photobactericidal properties of a neutral porphyrin grafted onto lignocellulosic fibers

    Energy Technology Data Exchange (ETDEWEB)

    Nzambe Ta keki, Jean Kerim; Ouk, Tan-Sothéa [Laboratoire de chimie des substances naturelles, Université de Limoges, 123 avenue Albert Thomas, 87060 Limoges (France); Zerrouki, Rachida [Laboratoire de chimie des substances naturelles, Université de Limoges, 123 avenue Albert Thomas, 87060 Limoges (France); Centre de Recherche sur les Matériaux Lignocellulosiques, Université du Québec à Trois-Rivières, 3351 boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7 (Canada); Faugeras, Pierre-Antoine; Sol, Vincent [Laboratoire de chimie des substances naturelles, Université de Limoges, 123 avenue Albert Thomas, 87060 Limoges (France); Brouillette, François [Centre de Recherche sur les Matériaux Lignocellulosiques, Université du Québec à Trois-Rivières, 3351 boul. des Forges, C.P. 500, Trois-Rivières, QC G9A 5H7 (Canada)

    2016-05-01

    Photodynamic antimicrobial chemotherapy (PACT), as one of the promising alternative antimicrobial treatment, has received great attention in recent years. In this work, a new antimicrobial material has been elaborated by grafting a neutral porphyrin, the metallated 5-(4-azidophenyl)-10,15,20-triphenylporphyrin, onto lignocellulosic fibers by using the Copper (I)-Catalyzed Alkyne-Azide 1,3-dipolar Cycloaddition (CuAAC) reaction. The cross-linked porphyrin-Kraft pulp material was characterized by infrared and by XPS spectroscopy analyses, which proved the covalent linkage between the porphyrin and propargylated Kraft pulp fibers. The antimicrobial activity of this material was tested under visible light irradiation with a low light dose (9.5 J/cm{sup 2}) against Staphylococcus aureus and Pseudomonas aeruginosa. The two bacterial strains deposited on the resulting photosensitizing Kraft pulp are efficiently killed after illumination. Such materials could find applications in industrial, household and medical environments as an alternative to overcome the widespread microbial multiresistance to classical treatments. - Highlights: • Elaboration of new antimicrobial paper • Grafting of porphyrin on lignocellulosic fibers using click chemistry • Modification of Kraft pulp fibers, using water as solvent.

  3. Order out of Randomness: Self-Organization Processes in Astrophysics

    Science.gov (United States)

    Aschwanden, Markus J.; Scholkmann, Felix; Béthune, William; Schmutz, Werner; Abramenko, Valentina; Cheung, Mark C. M.; Müller, Daniel; Benz, Arnold; Chernov, Guennadi; Kritsuk, Alexei G.; Scargle, Jeffrey D.; Melatos, Andrew; Wagoner, Robert V.; Trimble, Virginia; Green, William H.

    2018-03-01

    Self-organization is a property of dissipative nonlinear processes that are governed by a global driving force and a local positive feedback mechanism, which creates regular geometric and/or temporal patterns, and decreases the entropy locally, in contrast to random processes. Here we investigate for the first time a comprehensive number of (17) self-organization processes that operate in planetary physics, solar physics, stellar physics, galactic physics, and cosmology. Self-organizing systems create spontaneous " order out of randomness", during the evolution from an initially disordered system to an ordered quasi-stationary system, mostly by quasi-periodic limit-cycle dynamics, but also by harmonic (mechanical or gyromagnetic) resonances. The global driving force can be due to gravity, electromagnetic forces, mechanical forces (e.g., rotation or differential rotation), thermal pressure, or acceleration of nonthermal particles, while the positive feedback mechanism is often an instability, such as the magneto-rotational (Balbus-Hawley) instability, the convective (Rayleigh-Bénard) instability, turbulence, vortex attraction, magnetic reconnection, plasma condensation, or a loss-cone instability. Physical models of astrophysical self-organization processes require hydrodynamic, magneto-hydrodynamic (MHD), plasma, or N-body simulations. Analytical formulations of self-organizing systems generally involve coupled differential equations with limit-cycle solutions of the Lotka-Volterra or Hopf-bifurcation type.

  4. Deliberative Self-Organizing Traffic Lights with Elementary Cellular Automata

    Directory of Open Access Journals (Sweden)

    Jorge L. Zapotecatl

    2017-01-01

    Full Text Available Self-organizing traffic lights have shown considerable improvements compared to traditional methods in computer simulations. Self-organizing methods, however, use sophisticated sensors, increasing their cost and limiting their deployment. We propose a novel approach using simple sensors to achieve self-organizing traffic light coordination. The proposed approach involves placing a computer and a presence sensor at the beginning of each block; each such sensor detects a single vehicle. Each computer builds a virtual environment simulating vehicle movement to predict arrivals and departures at the downstream intersection. At each intersection, a computer receives information across a data network from the computers of the neighboring blocks and runs a self-organizing method to control traffic lights. Our simulations showed a superior performance for our approach compared with a traditional method (a green wave and a similar performance (close to optimal compared with a self-organizing method using sophisticated sensors but at a lower cost. Moreover, the developed sensing approach exhibited greater robustness against sensor failures.

  5. Friction-induced vibrations and self-organization mechanics and non-equilibrium thermodynamics of sliding contact

    CERN Document Server

    Nosonovsky, Michael

    2013-01-01

    Many scientists and engineers do not realize that, under certain conditions, friction can lead to the formation of new structures at the interface, including in situ tribofilms and various patterns. In turn, these structures-usually formed by destabilization of the stationary sliding regime-can lead to the reduction of friction and wear. Friction-Induced Vibrations and Self-Organization: Mechanics and Non-Equilibrium Thermodynamics of Sliding Contact combines the mechanical and thermodynamic methods in tribology, thus extending the field of mechanical friction-induced vibrations to non-mechanical instabilities and self-organization processes at the frictional interface. The book also relates friction-induced self-organization to novel biomimetic materials, such as self-lubricating, self-cleaning, and self-healing materials. Explore Friction from a Different Angle-as a Fundamental Force of Nature The book begins with an exploration of friction as a fundamental force of nature throughout the history of science....

  6. 9th Workshop on Self-Organizing Maps

    CERN Document Server

    Príncipe, José; Zegers, Pablo

    2013-01-01

    Self-organizing maps (SOMs) were developed by Teuvo Kohonen in the early eighties. Since then more than 10,000 works have been based on SOMs. SOMs are unsupervised neural networks useful for clustering and visualization purposes. Many SOM applications have been developed in engineering and science, and other fields. This book contains refereed papers presented at the 9th Workshop on Self-Organizing Maps (WSOM 2012) held at the Universidad de Chile, Santiago, Chile, on December 12-14, 2012. The workshop brought together researchers and practitioners in the field of self-organizing systems. Among the book chapters there are excellent examples of the use of SOMs in agriculture, computer science, data visualization, health systems, economics, engineering, social sciences, text and image analysis, and time series analysis. Other chapters present the latest theoretical work on SOMs as well as Learning Vector Quantization (LVQ) methods.

  7. Thought analysis on self-organization theories of MHD plasma

    International Nuclear Information System (INIS)

    Kondoh, Yoshiomi; Sato, Tetsuya.

    1992-08-01

    A thought analysis on the self-organization theories of dissipative MHD plasma is presented to lead to three groups of theories that lead to the same relaxed state of ∇ x B = λB, in order to find an essential physical picture embedded in the self-organization phenomena due to nonlinear and dissipative processes. The self-organized relaxed state due to the dissipation by the Ohm loss is shown to be formulated generally as the state such that yields the minimum dissipation rate of global auto-and/or cross-correlations between two quantities in j, B, and A for their own instantaneous values of the global correlations. (author)

  8. Self-organization of physical fields and spin

    International Nuclear Information System (INIS)

    Pestov, I.B.

    2008-01-01

    The subject of the present investigation is the laws of intrinsic self-organization of fundamental physical fields. In the framework of the Theory of Self-Organization the geometrical and physical nature of spin phenomena is uncovered. The key points are spin symmetry (the fundamental realization of the concept of geometrical internal symmetry) and the spinning field (space of defining representation of spin symmetry). It is shown that the essence of spin is the bipolar structure of spin symmetry induced by the gravitational potentials. The bipolar structure provides natural violation of spin symmetry and leads to spinstatics (theory of spinning field outside the time) and spindynamics. The equations of spinstatics and spindynamics are derived. It is shown that Sommerfeld's formula can be derived from the equations of spindynamics and hence the correspondence principle is valid. This means that the Theory of Self-Organization provides the new understanding of spin phenomena

  9. Measuring the Complexity of Self-Organizing Traffic Lights

    Directory of Open Access Journals (Sweden)

    Darío Zubillaga

    2014-04-01

    Full Text Available We apply measures of complexity, emergence, and self-organization to an urban traffic model for comparing a traditional traffic-light coordination method with a self-organizing method in two scenarios: cyclic boundaries and non-orientable boundaries. We show that the measures are useful to identify and characterize different dynamical phases. It becomes clear that different operation regimes are required for different traffic demands. Thus, not only is traffic a non-stationary problem, requiring controllers to adapt constantly; controllers must also change drastically the complexity of their behavior depending on the demand. Based on our measures and extending Ashby’s law of requisite variety, we can say that the self-organizing method achieves an adaptability level comparable to that of a living system.

  10. Self-Organization during Friction in Complex Surface Engineered Tribosystems

    Directory of Open Access Journals (Sweden)

    Ben D. Beake

    2010-02-01

    Full Text Available Self-organization during friction in complex surface engineered tribosystems is investigated. The probability of self-organization in these complex tribosystems is studied on the basis of the theoretical concepts of irreversible thermodynamics. It is shown that a higher number of interrelated processes within the system result in an increased probability of self-organization. The results of this thermodynamic model are confirmed by the investigation of the wear performance of a novel Ti0.2Al0.55Cr0.2Si0.03Y0.02N/Ti0.25Al0.65Cr0.1N (PVD coating with complex nano-multilayered structure under extreme tribological conditions of dry high-speed end milling of hardened H13 tool steel.

  11. Atmospheric Convective Organization: Self-Organized Criticality or Homeostasis?

    Science.gov (United States)

    Yano, Jun-Ichi

    2015-04-01

    Atmospheric convection has a tendency organized on a hierarchy of scales ranging from the mesoscale to the planetary scales, with the latter especially manifested by the Madden-Julian oscillation. The present talk examines two major possible mechanisms of self-organization identified in wider literature from a phenomenological thermodynamic point of view by analysing a planetary-scale cloud-resolving model simulation. The first mechanism is self-organized criticality. A saturation tendency of precipitation rate with the increasing column-integrated water, reminiscence of critical phenomena, indicates self-organized criticality. The second is a self-regulation mechanism that is known as homeostasis in biology. A thermodynamic argument suggests that such self-regulation maintains the column-integrated water below a threshold by increasing the precipitation rate. Previous analyses of both observational data as well as cloud-resolving model (CRM) experiments give mixed results. A satellite data analysis suggests self-organized criticality. Some observational data as well as CRM experiments support homeostasis. Other analyses point to a combination of these two interpretations. In this study, a CRM experiment over a planetary-scale domain with a constant sea-surface temperature is analyzed. This analysis shows that the relation between the column-integrated total water and precipitation suggests self-organized criticality, whereas the one between the column-integrated water vapor and precipitation suggests homeostasis. The concurrent presence of these two mechanisms are further elaborated by detailed statistical and budget analyses. These statistics are scale invariant, reflecting a spatial scaling of precipitation processes. These self-organization mechanisms are most likely be best theoretically understood by the energy cycle of the convective systems consisting of the kinetic energy and the cloud-work function. The author has already investigated the behavior of this

  12. Dualism of Sensitivity and Selectivity of Porphyrin Dimers in Electroanalysis.

    Science.gov (United States)

    Lisak, Grzegorz; Tamaki, Takashi; Ogawa, Takuji

    2017-04-04

    This work uncovers the application of porphyrin dimers for the use in electroanalysis, such as potentiometric determination of ions. It also puts in question a current perception of an occurrence of the super-Nernstian response, as a result of the possible dimerization of single porphyrins within an ion-selective membrane. To study that, four various porphyrin dimers were used as ionophores, namely, freebase-freebase, Zn-Zn, Zn-freebase, and freebase-Zn. Since the Zn-freebase and freebase-Zn porphyrin dimers carried both anion- and cation-sensitive porphyrin units, their application in ISEs was utilized in both anion- and cation-sensitive sensors. With respect to the lipophilic salt added, both porphyrins dimers were found anion- and cation-sensitive. This allowed using a single molecule as novel type of versatile ionophore (anion- and cation-selective), simply by varying the membrane composition. All anion-sensitive sensors were perchlorate-sensitive, while the cation-selective sensors were silver-sensitive. The selectivity of the sensors depended primarily on the porphyrin dimers in the ion-selective membrane. Furthermore, the selectivity of cation-sensitive dimer based sensors was found significantly superior to the ones measured for the single porphyrin unit based sensors (precursors of the porphyrin dimers). Thus, the dimerization of single porphyrins may actually be a factor to increase or modulate porphyrin selectivity. Moreover, in the case of cation-sensitive sensors, the selectivity vastly depended on the order of porphyrin units in the dimer. This opens a new approach of regulating and adjusting sensitivity and selectivity of the sensor through the application of complex porphyrin systems with more than one porphyrin units with mix sensitive porphyrins.

  13. Sugar-Based Polyamides: Self-Organization in Strong Polar Organic Solvents.

    Science.gov (United States)

    Rosu, Cornelia; Russo, Paul S; Daly, William H; Cueto, Rafael; Pople, John A; Laine, Roger A; Negulescu, Ioan I

    2015-09-14

    Periodic patterns resembling spirals were observed to form spontaneously upon unassisted cooling of d-glucaric acid- and d-galactaric acid-based polyamide solutions in N-methyl-N-morpholine oxide (NMMO) monohydrate. Similar observations were made in d-galactaric acid-based polyamide/ionic liquid (IL) solutions. The morphologies were investigated by optical, polarized light and confocal microscopy assays to reveal pattern details. Differential scanning calorimetry was used to monitor solution thermal behavior. Small- and wide-angle X-ray scattering data reflected the complex and heterogeneous nature of the self-organized patterns. Factors such as concentration and temperature were found to influence spiral dimensions and geometry. The distance between rings followed a first-order exponential decay as a function of polymer concentration. Fourier-Transform Infrared Microspectroscopy analysis of spirals pointed to H-bonding between the solvent and the pendant hydroxyl groups of the glucose units from the polymer backbone. Tests on self-organization into spirals of ketal-protected d-galactaric acid polyamides in NMMO monohydrate confirmed the importance of the monosaccharide's pendant free hydroxyl groups on the formation of these patterns. Rheology performed on d-galactaric-based polyamides at high concentration in NMMO monohydrate solution revealed the optimum conditions necessary to process these materials as fibers by spinning. The self-organization of these sugar-based polyamides mimics certain biological materials.

  14. Self-Organizing Map Models of Language Acquisition

    Directory of Open Access Journals (Sweden)

    Ping eLi

    2013-11-01

    Full Text Available Connectionist models have had a profound impact on theories of language. While most early models were inspired by the classic PDP architecture, recent models of language have explored various other types of models, including self-organizing models for language acquisition. In this paper we aim at providing a review of the latter type of models, and highlight a number of simulation experiments that we have conducted based on these models. We show that self-organizing connectionist models can provide significant insights into long-standing debates in both monolingual and bilingual language development.

  15. Unsupervised learning via self-organization a dynamic approach

    CERN Document Server

    Kyan, Matthew; Jarrah, Kambiz; Guan, Ling

    2014-01-01

    To aid in intelligent data mining, this book introduces a new family of unsupervised algorithms that have a basis in self-organization, yet are free from many of the constraints typical of other well known self-organizing architectures. It then moves through a series of pertinent real world applications with regards to the processing of multimedia data from its role in generic image processing techniques such as the automated modeling and removal of impulse noise in digital images, to problems in digital asset management, and its various roles in feature extraction, visual enhancement, segmentation, and analysis of microbiological image data.

  16. A self-organized system of smart preys and predators

    Energy Technology Data Exchange (ETDEWEB)

    Rozenfeld, Alejandro F. [Instituto de Investigaciones Fisicoquimicas Teoricas y Aplicadas (INIFTA), Facultad de Ciencias Exactas, UNLP, CONICET, Suc. 4, C.C. 16 (1900) La Plata (Argentina); Albano, Ezequiel V. [Instituto de Investigaciones Fisicoquimicas Teoricas y Aplicadas (INIFTA), Facultad de Ciencias Exactas, UNLP, CONICET, Suc. 4, C.C. 16 (1900) La Plata (Argentina)]. E-mail: ealbano@inifta.unlp.edu.ar

    2004-11-22

    Based on the fact that, a standard prey-predator model (SPPM), exhibits irreversible phase transitions, belonging to the universality class of directed percolation (DP), between prey-predator coexistence and predator extinction [Phys. Lett. A 280 (2001) 45], a self-organized prey-predator model (SOPPM) is formulated and studied by means of extensive Monte Carlo simulations. The SOPPM is achieved defining the parameters of the SPPM as functions of the density of species. It is shown that the SOPPM self-organizes into an active state close the absorbing phase of the SPPM, and consequently their avalanche exponents also belong to the universality class of DP.

  17. Anomalous relaxation and self-organization in nonequilibrium processes

    International Nuclear Information System (INIS)

    Fatkullin, Ibrahim; Kladko, Konstantin; Mitkov, Igor; Bishop, A. R.

    2001-01-01

    We study thermal relaxation in ordered arrays of coupled nonlinear elements with external driving. We find that our model exhibits dynamic self-organization manifested in a universal stretched-exponential form of relaxation. We identify two types of self-organization, cooperative and anticooperative, which lead to fast and slow relaxation, respectively. We give a qualitative explanation for the behavior of the stretched exponent in different parameter ranges. We emphasize that this is a system exhibiting stretched-exponential relaxation without explicit disorder or frustration

  18. 5G heterogeneous networks self-organizing and optimization

    CERN Document Server

    Rong, Bo; Kadoch, Michel; Sun, Songlin; Li, Wenjing

    2016-01-01

    This SpringerBrief provides state-of-the-art technical reviews on self-organizing and optimization in 5G systems. It covers the latest research results from physical-layer channel modeling to software defined network (SDN) architecture. This book focuses on the cutting-edge wireless technologies such as heterogeneous networks (HetNets), self-organizing network (SON), smart low power node (LPN), 3D-MIMO, and more. It will help researchers from both the academic and industrial worlds to better understand the technical momentum of 5G key technologies.

  19. Complexity in plasma. A grand view of self-organization

    International Nuclear Information System (INIS)

    Sato, Tetsuya.

    1994-11-01

    The central theme of the Complexity is the inquest of the creation of ordered structure in nature. Extensive computer simulations on plasmas have revealed that self-organization is governed by the three key processes, i.e. energy pumping, entropy expulsion and nonlinearity. A system exhibits characteristically different self-organization, depending on whether the energy pumping is instantaneous or continuous, or whether the produced entropy is expulsed or reserved. The nonlinearity acts to bring a nonequilibrium state into a bifurcation, thus resulting in a new structure along with an anomalous entropy production. (author)

  20. Self-Organized Fission Control for Flocking System

    Directory of Open Access Journals (Sweden)

    Mingyong Liu

    2015-01-01

    Full Text Available This paper studies the self-organized fission control problem for flocking system. Motivated by the fission behavior of biological flocks, information coupling degree (ICD is firstly designed to represent the interaction intensity between individuals. Then, from the information transfer perspective, a “maximum-ICD” based pairwise interaction rule is proposed to realize the directional information propagation within the flock. Together with the “separation/alignment/cohesion” rules, a self-organized fission control algorithm is established that achieves the spontaneous splitting of flocking system under conflict external stimuli. Finally, numerical simulations are provided to demonstrate the effectiveness of the proposed algorithm.

  1. Self-Organization in Coupled Map Scale-Free Networks

    International Nuclear Information System (INIS)

    Xiao-Ming, Liang; Zong-Hua, Liu; Hua-Ping, Lü

    2008-01-01

    We study the self-organization of phase synchronization in coupled map scale-free networks with chaotic logistic map at each node and find that a variety of ordered spatiotemporal patterns emerge spontaneously in a regime of coupling strength. These ordered behaviours will change with the increase of the average links and are robust to both the system size and parameter mismatch. A heuristic theory is given to explain the mechanism of self-organization and to figure out the regime of coupling for the ordered spatiotemporal patterns

  2. Synthesis of borylated porphyrin and bromo- porphyrin as building blocks for light harvesting antenna molecule

    Science.gov (United States)

    Radzuan, Nuur Haziqah Mohd; Hassan, Nurul Izzaty; Bakar, Muntaz Abu

    2018-04-01

    The building blocks for synthesis of light harvesting antenna which are 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolane)-10,20-diphenylporphyrin, 5-(4,4,5,5-tetramethyl-1,3,2-dioxaborolane)-10,20-dihexylporphyrin and 5,10,15,20-tetra-(bromophenyl)porphyrin were synthesized. Borylated porphyrin was synthesized by Suzuki coupling reaction between A2BC bromo-porphyrin and pinacolborane. Whereas 5,10,15,20-tetra-(bromophenyl) porphyrin was synthesized by Lindsey condensation reaction between pyrrole and 4-bromobenzaldehyde. 1H-NMR, 13C-NMR spectroscopy and UV-visible spectroscopy confirmed the successful formation of all compounds.

  3. Self-Organization and Annealed Disorder in a Fracturing Process

    DEFF Research Database (Denmark)

    Caldarelli, Guido; Di Tolla, Francesco; Petri, Alberto

    1996-01-01

    We show that a vectorial model for inhomogeneous elastic media self-organizes under external stress. An onset of crack avalanches of every duration and length scale compatible with the lattice size is observed. The behavior is driven by the introduction of annealed disorder, i.e., by lowering...... condition for reproducing the algebraic distribution of the energy released during cracks formation....

  4. Comparative investigation of two different self-organizing map ...

    African Journals Online (AJOL)

    Purpose: To demonstrate the ability and investigate the performance of two different wavelength selection approaches based on self-organizing map (SOM) technique in partial least-squares (PLS) regression for analysis of pharmaceutical binary mixtures with strongly overlapping spectra. Methods: Two different variable ...

  5. Eco-evolutionary feedbacks in self-organized ecosystems

    NARCIS (Netherlands)

    de Jager, M.

    2015-01-01

    Spatial patterns in natural systems may appear amazingly complex. Yet, they can often be explained by a few simple rules. In self-organized ecosystems, complex spatial patterns at the ecosystem scale arise as the consequence of actions of and interactions between organisms at a local scale.

  6. Self-organized criticality in a network of interacting neurons

    NARCIS (Netherlands)

    Cowan, J.D.; Neuman, J.; Kiewiet, B.; van Drongelen, W.

    2013-01-01

    This paper contains an analysis of a simple neural network that exhibits self-organized criticality. Such criticality follows from the combination of a simple neural network with an excitatory feedback loop that generates bistability, in combination with an anti-Hebbian synapse in its input pathway.

  7. Self-organization as a possible route to fusion energy

    International Nuclear Information System (INIS)

    Sanduloviciu, M.; Lozneanu, E.; Popescu, S.

    2000-01-01

    The generation of a ball lightning-like complex structure by sudden injection of matter and energy proves the presence of a cascading self-organization scenario in an experimental device containing a collisional plasma. Based on these results, we suggest the possibility to replicate, under controlled laboratory conditions, the ball lightning-like structures with potential fusion applications. (author)

  8. Gaining insight in domestic violence with emergent self organizing maps

    NARCIS (Netherlands)

    Poelmans, J.; Elzinga, P.; Viaene, S.; van Hulle, M.M.; Dedene, G.

    2009-01-01

    Topographic maps are an appealing exploratory instrument for discovering new knowledge from databases. During the past years, new types of Self Organizing Maps (SOM) were introduced in the literature, including the recent Emergent SOM. The ESOM tool is used here to analyze a large set of police

  9. 10th Workshop on Self-Organizing Maps

    CERN Document Server

    Schleif, Frank-Michael; Kaden, Marika; Lange, Mandy

    2014-01-01

    The book collects the scientific contributions presented at the 10th Workshop on Self-Organizing Maps (WSOM 2014) held at the University of Applied Sciences Mittweida, Mittweida (Germany, Saxony), on July 2–4, 2014. Starting with the first WSOM-workshop 1997 in Helsinki this workshop focuses on newest results in the field of supervised and unsupervised vector quantization like self-organizing maps for data mining and data classification.   This 10th WSOM brought together more than 50 researchers, experts and practitioners in the beautiful small town Mittweida in Saxony (Germany) nearby the mountains Erzgebirge to discuss new developments in the field of unsupervised self-organizing vector quantization systems and learning vector quantization approaches for classification. The book contains the accepted papers of the workshop after a careful review process as well as summaries of the invited talks.   Among these book chapters there are excellent examples of the use of self-organizing maps in agriculture, ...

  10. Research on Corporate Social Responsibility of Supply Chain System Based on the Self-organization Theory

    OpenAIRE

    Baoying Wang

    2013-01-01

    In this study, the characteristics of supply chain system are analyzed based on the Self-organization theory from the angle of view of supply chain system. The mathematical models when the system fulfilling social responsibility including self-organization evolution model and self-organization function model are developed to discuss the formation and function of self-organization in supply chain system and coordination. Some basic conditions and tactics about self-organization establishment a...

  11. Covalent functionalization of reduced graphene oxide with porphyrin by means of diazonium chemistry for nonlinear optical performance

    Science.gov (United States)

    Wang, Aijian; Yu, Wang; Huang, Zhipeng; Zhou, Feng; Song, Jingbao; Song, Yinglin; Long, Lingliang; Cifuentes, Marie P.; Humphrey, Mark G.; Zhang, Long; Shao, Jianda; Zhang, Chi

    2016-03-01

    Reduced graphene oxide (RGO)-porphyrin (TPP) nanohybrids (RGO-TPP 1 and RGO-TPP 2) were prepared by two synthetic routes that involve functionalization of the RGO using diazonium salts. The microscopic structures, morphology, photophysical properties and nonlinear optical performance of the resultant RGO-TPP nanohybrids were investigated. The covalent bonding of the porphyrin-functionalized-RGO nanohybrid materials was confirmed by Fourier transform infrared spectroscopy, Raman spectroscopy, X-ray photoelectron spectroscopy, transmission electron microscopy, and thermogravimetric analysis. Attachment of the porphyrin units to the surface of the RGO by diazotization significantly improves the solubility and ease of processing of these RGO-based nanohybrid materials. Ultraviolet/visible absorption and steady-state fluorescence studies indicate considerable π-π interactions and effective photo-induced electron and/or energy transfer between the porphyrin moieties and the extended π-system of RGO. The nonlinear optical properties of RGO-TPP 1 and RGO-TPP 2 were investigated by open-aperture Z-scan measurements at 532 nm with both 4 ns and 21 ps laser pulses, the results showing that the chemical nanohybrids exhibit improved nonlinear optical properties compared to those of the benchmark material C60, and the constituent RGO or porphyrins.

  12. Heterobimetallic porphyrin complexes displaying triple dynamics: coupled metal motions controlled by constitutional evolution.

    Science.gov (United States)

    Le Gac, Stéphane; Fusaro, Luca; Roisnel, Thierry; Boitrel, Bernard

    2014-05-07

    Pb, with the metal ions on opposite sides both bound to the N-core and to a carboxylate of a strap, were structurally characterized. These results establish an unprecedented approach in supramolecular coordination chemistry, by considering the reversible interaction of a metal ion with the porphyrin N-core as a new source of self-organization processes. This work should provide new inspirations for the design of innovative adaptative materials and devices.

  13. Self-organized topology of recurrence-based complex networks

    International Nuclear Information System (INIS)

    Yang, Hui; Liu, Gang

    2013-01-01

    With the rapid technological advancement, network is almost everywhere in our daily life. Network theory leads to a new way to investigate the dynamics of complex systems. As a result, many methods are proposed to construct a network from nonlinear time series, including the partition of state space, visibility graph, nearest neighbors, and recurrence approaches. However, most previous works focus on deriving the adjacency matrix to represent the complex network and extract new network-theoretic measures. Although the adjacency matrix provides connectivity information of nodes and edges, the network geometry can take variable forms. The research objective of this article is to develop a self-organizing approach to derive the steady geometric structure of a network from the adjacency matrix. We simulate the recurrence network as a physical system by treating the edges as springs and the nodes as electrically charged particles. Then, force-directed algorithms are developed to automatically organize the network geometry by minimizing the system energy. Further, a set of experiments were designed to investigate important factors (i.e., dynamical systems, network construction methods, force-model parameter, nonhomogeneous distribution) affecting this self-organizing process. Interestingly, experimental results show that the self-organized geometry recovers the attractor of a dynamical system that produced the adjacency matrix. This research addresses a question, i.e., “what is the self-organizing geometry of a recurrence network?” and provides a new way to reproduce the attractor or time series from the recurrence plot. As a result, novel network-theoretic measures (e.g., average path length and proximity ratio) can be achieved based on actual node-to-node distances in the self-organized network topology. The paper brings the physical models into the recurrence analysis and discloses the spatial geometry of recurrence networks

  14. Discerning Thermodynamic Basis of Self-Organization in Critical Zone Structure and Function

    Science.gov (United States)

    Richardson, M.; Kumar, P.

    2017-12-01

    Self-organization characterizes the spontaneous emergence of order. Self-organization in the Critical Zone, the region of Earth's skin from below the groundwater table to the top of the vegetation canopy, involves the interaction of biotic and abiotic processes occurring through a hierarchy of temporal and spatial scales. The self-organization is sustained through input of energy and material in an open system framework, and the resulting formations are called dissipative structures. Why do these local states of organization form and how are they thermodynamically favorable? We hypothesize that structure formation is linked to energy conversion and matter throughput rates across driving gradients. Furthermore, we predict that structures in the Critical Zone evolve based on local availability of nutrients, water, and energy. By considering ecosystems as open thermodynamic systems, we model and study the throughput signatures on short times scales to determine origins and characteristics of ecosystem structure. This diagnostic approach allows us to use fluxes of matter and energy to understand the thermodynamic drivers of the system. By classifying the fluxes and dynamics in a system, we can identify patterns to determine the thermodynamic drivers for organized states. Additionally, studying the partitioning of nutrients, water, and energy throughout ecosystems through dissipative structures will help identify reasons for structure shapes and how these shapes impact major Critical Zone functions.

  15. Interfacial self-organization of bolaamphiphiles bearing mesogenic groups: relationships between the molecular structures and their self-organized morphologies.

    Science.gov (United States)

    Song, Bo; Liu, Guanqing; Xu, Rui; Yin, Shouchun; Wang, Zhiqiang; Zhang, Xi

    2008-04-15

    This article discusses the relationship between the molecular structure of bolaamphiphiles bearing mesogenic groups and their interfacial self-organized morphology. On the basis of the molecular structures of bolaamphiphiles, we designed and synthesized a series of molecules with different hydrophobic alkyl chain lengths, hydrophilic headgroups, mesogenic groups, and connectors between the alkyl chains and the mesogenic group. Through investigating their interfacial self-organization behavior, some experiential rules are summarized: (1) An appropriate alkyl chain length is necessary to form stable surface micelles; (2) different categories of headgroups have a great effect on the interfacial self-organized morphology; (3) different types of mesogenic groups have little effect on the structure of the interfacial assembly when it is changed from biphenyl to azobenzene or stilbene; (4) the orientation of the ester linker between the mesogenic group and alkyl chain can greatly influence the interfacial self-organization behavior. It is anticipated that this line of research may be helpful for the molecular engineering of bolaamphiphiles to form tailor-made morphologies.

  16. Helical chirality induction of expanded porphyrin analogues

    Indian Academy of Sciences (India)

    of this figure-eight conformation in relation to the num- ber of π-electrons attracts ... porphyrin moieties.7a–d In this context, application of ... become problematic. Lindsey .... cell. [a]. CD sign (λmax/nm). UV-vis θ/ abs. Ligand of 1st Cotton effect.

  17. Porphyrin formation and its regulation in Arthrobacter

    NARCIS (Netherlands)

    Kortstee, G.J.J.

    1969-01-01

    Porphyrins (tetrapyrroles) are the basic compounds of a number of substances functioning in living organisms as carriers of oxygen (hemoglobin), carriers of electrons (cytochromes) or as a trap for radiant energy (chlorophyll). In these active forms the tetrapyrroles contain a metal and are

  18. Photodynamic Efficiency of Porphyrins Encapsulated into Polysilsesquioxanes

    Czech Academy of Sciences Publication Activity Database

    Rychtáriková, Renata; Šabata, Stanislav; Hetflejš, Jiří; Kuncová, Gabriela

    2012-01-01

    Roč. 66, č. 4 (2012), s. 269-277 ISSN 0366-6352 R&D Projects: GA MŠk ME 892; GA MŠk(CZ) LC06070 Institutional research plan: CEZ:AV0Z40720504 Keywords : porphyrin * immobilization * specific surface area Subject RIV: CC - Organic Chemistry Impact factor: 0.879, year: 2012

  19. Photoconductivity in DNA-Porphyrin Complexes

    Science.gov (United States)

    Myint, Peco; Oxford, Emma; Nyazenga, Collence; Smith, Walter; Qi, Zhengqing; Johnson, A. T.

    2015-03-01

    We have measured the photoconductivity of λ - DNA that is modified by intercalating a porphyrin compound, meso-tetrakis(N-methyl-4-pyridiniumyl)porphyrin (TMPyP), into its base stacks. Intercalation was verified by a red shift and hypochromism of the Soret absorption peak. The DNA/porphyrin strands were then deposited onto oxidized silicon substrates which had been patterned with interdigitated electrodes, and blown dry. Electrical measurements were carried out under nitrogen, using illumination from a 445 nm laser; this wavelength falls within the absorption peak of the DNA/porphyrin complexes. When initially measured under dry nitrogen, the complexes show no photoconductivity or dark conductivity. However, at relative humidities of 30% and above, we do observe dark conductivity, and also photoconductivity that grows with time. Photoconductivity gets larger at higher relative humidity. Remarkably, when the humidity is lowered again, some photoconductivity is now observed, indicating a change that persists for more than 24 hours. It may be that the humidity alters the structure of the DNA, perhaps allowing for better alignment of the bases. This work was supported by NSF Grant BMAT-1306170.

  20. Thin porphyrin composite membranes with enhanced organic solvent transport

    KAUST Repository

    Phuoc, Duong

    2018-05-01

    Extending the stability of polymeric membranes in organic solvents is important for applications in chemical and pharmaceutical industry. Thin-film composite membranes with enhanced solvent permeance are proposed, using porphyrin as a building block. Hybrid polyamide films are formed by interfacial polymerization of 5,10,15,20-(tetra-4-aminophenyl)porphyrin/m-phenylene diamine (MPD) mixtures with trimesoyl chloride. Porphyrin is a non-planar molecule, containing a heterocyclic tetrapyrrole unit. Its incorporation into a polyamide film leads to higher free volume than that of a standard polyamide film. Polyamide films derived from porphyrin and MPD amines with a fixed total amine concentration of 1wt% and various porphyrin/MPD ratios were fabricated and characterized. The porphyrin/MPD polyamide film was complexed with Cu(II), due to the binding capacity of porphyrin to metal ions. By coupling scanning transmission electron microscopy (STEM) with electron energy-loss spectroscopy (EELS), Cu mapping was obtained, revealing the distribution of porphyrin in the interfacial polymerized layer. By using porphyrin as amine-functionalized monomer a membrane with thin selective skin and enhanced solvent transport is obtained, with good dye selectivity in the nanofiltration range. For instance, an ultra-fast hexane permeance, 40-fold increased, was confirmed when using 0.5/0.5 porphyrin/MPD mixtures, instead of only MPD as amine monomer. A rejection of 94.2% Brilliant Blue R (826g/mol) in methanol was measured.

  1. Synthesis, characterization, and nonlinear optical properties of graphene oxide functionalized with tetra-amino porphyrin

    Science.gov (United States)

    Yamuna, R.; Ramakrishnan, S.; Dhara, Keerthy; Devi, R.; Kothurkar, Nikhil K.; Kirubha, E.; Palanisamy, P. K.

    2013-01-01

    The synthesis of a porphyrin-graphene oxide hybrid (GO-TAP) was carried out by covalently functionalizing graphene oxide (GO) with 5,10,15,20 mesotetra (4-aminophenyl) porphyrin (TAP) through an amide linkage. The GO-TAP hybrid has been characterized by Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, and UV-visible spectroscopy. The peak intensity of the Soret band of the material was suppressed compared to neat TAP. This indicates a strong interaction between the electronic energy level of TAP and GO in the GO-TAP hybrid. The functionalization of GO with TAP significantly improved its solubility and dispersion stability in organic solvents. Scanning electron micrographs reveal that the hybrid was found to be similar to the unmodified GO but slightly more wrinkled. Transmission electron micrographs also demonstrate that GO sheet in the hybrid is more wrinkled with some dark spot due to functionalization. Atomic force microscopy results also reveal that the TAP functionalization increases the thickness of GO sheet to 2.0-3.0 nm from 1.2 to 1.8 nm. We observed improved nonlinear optical and optical limiting properties for the hybrid compared to both graphene oxide and porphyrin. GO-TAP shows fluorescence quenching compared with porphyrin, indicating excellent electron and/or energy transfer to GO from TAP. Thermogravimetric analysis confirms that the GO-TAP hybrid has outstanding thermal stability.

  2. Synthesis and photophysical properties of phosphorus(V) porphyrins functionalized with axial carbazolylvinylnaphthalimides.

    Science.gov (United States)

    Zhan, Yong; Cao, Kaiyu; Wang, Chenguang; Jia, Junhui; Xue, Pengchong; Liu, Xingliang; Duan, Xuemei; Lu, Ran

    2012-11-21

    We have synthesized new D-A-D type phosphorus(V) porphyrin derivatives and functionalized with axial carbazolylvinylnaphthalimide units. The absorption bands of the obtained phosphorus(V) porphyrins were in the range 250-640 nm with high molar absorption coefficients, meaning strong light-harvesting abilities. Notably, it is found that the devices based on phosphorus(V) porphyrins with a configuration structure of [ITO/PEDOT : PSS/organic active film/LiF/Al] give an incident-photon-to-current conversion efficiency (IPCE) response. The maximal IPCE value reaches 2.76% for the device based on compound , which is much higher than that of 0.20% for compound . The reason might be due to the low oxidation potential and the strong light-harvesting ability of the enlarged conjugation of the axial units in compound . Therefore, we deduced that photo-induced electron transfer happened in phosphorus(V) porphyrins bearing axial conjugated donor units, which would make them good candidates for photovoltaic materials that could be applied in solar cells.

  3. RAFT Synthesis and Self-Assembly of Free-Base Porphyrin Cored Star Polymers

    Directory of Open Access Journals (Sweden)

    Lin Wu

    2011-01-01

    Full Text Available Reversible addition fragmentation chain transfer (RAFT synthesis and self-assembly of free-base porphyrin cored star polymers are reported. The polymerization, in the presence of a free-base porphyrin cored chain transfer agent (CTA-FBP, produced porphyrin star polymers with controlled molecular weights and narrow polydispersities for a number of monomers including N, N-dimethylacrylamide (DMA and styrene (St. Well-defined amphiphilic star block copolymers, P-(PS-PDMA4 and P-(PDMA-PS4 (P: porphyrin, were also prepared and used for self-assembly studies. In methanol, a selective solvent for PDMA, spherical micelles were observed for both block copolymers as characterized by TEM. UV-vis studies suggested star-like micelles were formed from P-(PS-PDMA4, while P-(PDMA-PS4 aggregated into flower-like micelles. Spectrophotometric titrations indicated that the optical response of these two micelles to external ions was a function of micellar structures. These structure-related properties will be used for micelle studies and functional material development in the future.

  4. Building-up novel coordination polymer with Zn(II) porphyrin dimer ...

    Indian Academy of Sciences (India)

    mer with porphyrin dimer. Solution structures of the complexes along with binding studies in solution between ... porphyrin polymers by self-assembly is fascinating ..... ture determination. ..... J K M 2000 In The Porphyrin Handbook Kadish K M,.

  5. Templated dewetting: designing entirely self-organized platforms for photocatalysis.

    Science.gov (United States)

    Altomare, Marco; Nguyen, Nhat Truong; Schmuki, Patrik

    2016-12-01

    Formation and dispersion of metal nanoparticles on oxide surfaces in site-specific or even arrayed configuration are key in various technological processes such as catalysis, photonics, electrochemistry and for fabricating electrodes, sensors, memory devices, and magnetic, optical, and plasmonic platforms. A crucial aspect towards an efficient performance of many of these metal/metal oxide arrangements is a reliable fabrication approach. Since the early works on graphoepitaxy in the 70s, solid state dewetting of metal films on patterned surfaces has been much explored and regarded as a most effective tool to form defined arrays of ordered metal particles on a desired substrate. While templated dewetting has been studied in detail, particularly from a mechanistic perspective on lithographically patterned Si surfaces, the resulting outstanding potential of its applications on metal oxide semiconductors, such as titania, has received only limited attention. In this perspective we illustrate how dewetting and particularly templated dewetting can be used to fabricate highly efficient metal/TiO 2 photocatalyst assemblies e.g. for green hydrogen evolution. A remarkable advantage is that the synthesis of such photocatalysts is completely based on self-ordering principles: anodic self-organized TiO 2 nanotube arrays that self-align to a highest degree of hexagonal ordering are an ideal topographical substrate for a second self-ordering process, that is, templated-dewetting of sputter-deposited metal thin films. The controllable metal/semiconductor coupling delivers intriguing features and functionalities. We review concepts inherent to dewetting and particularly templated dewetting, and outline a series of effective tools that can be synergistically interlaced to reach fine control with nanoscopic precision over the resulting metal/TiO 2 structures (in terms of e.g. high ordering, size distribution, site specific placement, alloy formation) to maximize their photocatalytic

  6. Spectral properties of porphyrins in the systems with layered silicates

    International Nuclear Information System (INIS)

    Ceklovsky, A.

    2009-03-01

    This work is focused on investigation of hybrid materials based on layered silicates, representing host inorganic component, and porphyrin dyes as organic guest. Aqueous colloidal dispersions, as well as thin solid films of layered silicate/porphyrin systems were studied. Modification of photophysical properties, such as absorption and fluorescence of molecules, adsorbed or incorporated in layered silicate hosts, were studied mainly to spread the knowledge about the environments suitable for incorporating aromatic compounds, providing photoactive properties of potential technological interest. TMPyP cations interact with the surfaces of layered silicates via electrostatic interactions. The extent of dye adsorption on colloidal particles of the silicates is influenced by the CEC values and swelling ability of silicates. Interaction of porphyrins with layered silicate hosts leads to significant changes of dye spectral properties. One of the key parameters that has a crucial impact on this interaction is the layer charge of silicate template. Other factors influence the resulting spectral properties of hybrid systems, such as the method of hybrid material preparation, the material's type (colloid, film), and the modification of the silicate host. Molecular orientation studies using linearly-polarized spectroscopies in VIS and IR regions revealed that TMPyP molecules were oriented in almost parallel fashion with respect to the silicate surface plane. Slightly higher values of the orientation angle of TMPyP transition moment were observed for the TMPyP/FHT system. Thus, flattening of the guest TMPyP molecules is the next important factor (mainly in the systems with lower layer charge), influencing its spectral properties upon the interaction with layered silicates. Fluorescence was effectively quenched in the systems based on solid films prepared from the high concentration of the dye (10-3 mol.dm-3). The quenching is most probably related to the structure of the

  7. Self-organized lattice of ordered quantum dot molecules

    International Nuclear Information System (INIS)

    Lippen, T. von; Noetzel, R.; Hamhuis, G.J.; Wolter, J.H.

    2004-01-01

    Ordered groups of InAs quantum dots (QDs), lateral QD molecules, are created by self-organized anisotropic strain engineering of a (In,Ga)As/GaAs superlattice (SL) template on GaAs (311)B in molecular-beam epitaxy. During stacking, the SL template self-organizes into a two-dimensionally ordered strain modulated network on a mesoscopic length scale. InAs QDs preferentially grow on top of the nodes of the network due to local strain recognition. The QDs form a lattice of separated groups of closely spaced ordered QDs whose number can be controlled by the GaAs separation layer thickness on top of the SL template. The QD groups exhibit excellent optical properties up to room temperature

  8. SOUNET: Self-Organized Underwater Wireless Sensor Network

    Directory of Open Access Journals (Sweden)

    Hee-won Kim

    2017-02-01

    Full Text Available In this paper, we propose an underwater wireless sensor network (UWSN named SOUNET where sensor nodes form and maintain a tree-topological network for data gathering in a self-organized manner. After network topology discovery via packet flooding, the sensor nodes consistently update their parent node to ensure the best connectivity by referring to the timevarying neighbor tables. Such a persistent and self-adaptive method leads to high network connectivity without any centralized control, even when sensor nodes are added or unexpectedly lost. Furthermore, malfunctions that frequently happen in self-organized networks such as node isolation and closed loop are resolved in a simple way. Simulation results show that SOUNET outperforms other conventional schemes in terms of network connectivity, packet delivery ratio (PDR, and energy consumption throughout the network. In addition, we performed an experiment at the Gyeongcheon Lake in Korea using commercial underwater modems to verify that SOUNET works well in a real environment.

  9. SOUNET: Self-Organized Underwater Wireless Sensor Network.

    Science.gov (United States)

    Kim, Hee-Won; Cho, Ho-Shin

    2017-02-02

    In this paper, we propose an underwater wireless sensor network (UWSN) named SOUNET where sensor nodes form and maintain a tree-topological network for data gathering in a self-organized manner. After network topology discovery via packet flooding, the sensor nodes consistently update their parent node to ensure the best connectivity by referring to the timevarying neighbor tables. Such a persistent and self-adaptive method leads to high network connectivity without any centralized control, even when sensor nodes are added or unexpectedly lost. Furthermore, malfunctions that frequently happen in self-organized networks such as node isolation and closed loop are resolved in a simple way. Simulation results show that SOUNET outperforms other conventional schemes in terms of network connectivity, packet delivery ratio (PDR), and energy consumption throughout the network. In addition, we performed an experiment at the Gyeongcheon Lake in Korea using commercial underwater modems to verify that SOUNET works well in a real environment.

  10. A self-organized criticality model for plasma transport

    International Nuclear Information System (INIS)

    Carreras, B.A.; Newman, D.; Lynch, V.E.

    1996-01-01

    Many models of natural phenomena manifest the basic hypothesis of self-organized criticality (SOC). The SOC concept brings together the self-similarity on space and time scales that is common to many of these phenomena. The application of the SOC modelling concept to the plasma dynamics near marginal stability opens new possibilities of understanding issues such as Bohm scaling, profile consistency, broad band fluctuation spectra with universal characteristics and fast time scales. A model realization of self-organized criticality for plasma transport in a magnetic confinement device is presented. The model is based on subcritical resistive pressure-gradient-driven turbulence. Three-dimensional nonlinear calculations based on this model show the existence of transport under subcritical conditions. This model that includes fluctuation dynamics leads to results very similar to the running sandpile paradigm

  11. Energy driven self-organization in nanoscale metallic liquid films.

    Science.gov (United States)

    Krishna, H; Shirato, N; Favazza, C; Kalyanaraman, R

    2009-10-01

    Nanometre thick metallic liquid films on inert substrates can spontaneously dewet and self-organize into complex nanomorphologies and nanostructures with well-defined length scales. Nanosecond pulses of an ultraviolet laser can capture the dewetting evolution and ensuing nanomorphologies, as well as introduce dramatic changes to dewetting length scales due to the nanoscopic nature of film heating. Here, we show theoretically that the self-organization principle, based on equating the rate of transfer of thermodynamic free energy to rate of loss in liquid flow, accurately describes the spontaneous dewetting. Experimental measurements of laser dewetting of Ag and Co liquid films on SiO(2) substrates confirm this principle. This energy transfer approach could be useful for analyzing the behavior of nanomaterials and chemical processes in which spontaneous changes are important.

  12. Self-organizing map models of language acquisition

    Science.gov (United States)

    Li, Ping; Zhao, Xiaowei

    2013-01-01

    Connectionist models have had a profound impact on theories of language. While most early models were inspired by the classic parallel distributed processing architecture, recent models of language have explored various other types of models, including self-organizing models for language acquisition. In this paper, we aim at providing a review of the latter type of models, and highlight a number of simulation experiments that we have conducted based on these models. We show that self-organizing connectionist models can provide significant insights into long-standing debates in both monolingual and bilingual language development. We suggest future directions in which these models can be extended, to better connect with behavioral and neural data, and to make clear predictions in testing relevant psycholinguistic theories. PMID:24312061

  13. 11th Workshop on Self-Organizing Maps

    CERN Document Server

    Mendenhall, Michael; O'Driscoll, Patrick

    2016-01-01

    This book contains the articles from the international conference 11th Workshop on Self-Organizing Maps 2016 (WSOM 2016), held at Rice University in Houston, Texas, 6-8 January 2016. WSOM is a biennial international conference series starting with WSOM'97 in Helsinki, Finland, under the guidance and direction of Professor Tuevo Kohonen (Emeritus Professor, Academy of Finland). WSOM brings together the state-of-the-art theory and applications in Competitive Learning Neural Networks: SOMs, LVQs and related paradigms of unsupervised and supervised vector quantization. The current proceedings present the expert body of knowledge of 93 authors from 15 countries in 31 peer reviewed contributions. It includes papers and abstracts from the WSOM 2016 invited speakers representing leading researchers in the theory and real-world applications of Self-Organizing Maps and Learning Vector Quantization: Professor Marie Cottrell (Universite Paris 1 Pantheon Sorbonne, France), Professor Pablo Estevez (University of Chile and ...

  14. Self-organized service negotiation for collaborative decision making.

    Science.gov (United States)

    Zhang, Bo; Huang, Zhenhua; Zheng, Ziming

    2014-01-01

    This paper proposes a self-organized service negotiation method for CDM in intelligent and automatic manners. It mainly includes three phases: semantic-based capacity evaluation for the CDM sponsor, trust computation of the CDM organization, and negotiation selection of the decision-making service provider (DMSP). In the first phase, the CDM sponsor produces the formal semantic description of the complex decision task for DMSP and computes the capacity evaluation values according to participator instructions from different DMSPs. In the second phase, a novel trust computation approach is presented to compute the subjective belief value, the objective reputation value, and the recommended trust value. And in the third phase, based on the capacity evaluation and trust computation, a negotiation mechanism is given to efficiently implement the service selection. The simulation experiment results show that our self-organized service negotiation method is feasible and effective for CDM.

  15. How nature works the science of self-organized criticality

    CERN Document Server

    Bak, Per

    1996-01-01

    This is an acclaimed book intended for the general reader who is interested in science. The author is a physicist who is well-known for his development of the property called "self-organized criticality", a property or phenomenon that lies at the heart of large dynamical systems. It can be used to analyse systems that are complicated, and which are part of the new science of complexity. It is a unifying concept that can be used to study phenomena in fields as diverse as economics, astronomy, the earth sciences, and physics. The author discusses his discovery of self-organized criticality; its relation to the world of classical physics; computer simulations and experiments which aid scientists' understanding of the property; and the relation of the subject to popular areas such as fractal geometry and power laws; cellular automata, and a wide range of practical applications.

  16. Self-organizing periodicity in development: organ positioning in plants.

    Science.gov (United States)

    Bhatia, Neha; Heisler, Marcus G

    2018-02-08

    Periodic patterns during development often occur spontaneously through a process of self-organization. While reaction-diffusion mechanisms are often invoked, other types of mechanisms that involve cell-cell interactions and mechanical buckling have also been identified. Phyllotaxis, or the positioning of plant organs, has emerged as an excellent model system to study the self-organization of periodic patterns. At the macro scale, the regular spacing of organs on the growing plant shoot gives rise to the typical spiral and whorled arrangements of plant organs found in nature. In turn, this spacing relies on complex patterns of cell polarity that involve feedback between a signaling molecule - the plant hormone auxin - and its polar, cell-to-cell transport. Here, we review recent progress in understanding phyllotaxis and plant cell polarity and highlight the development of new tools that can help address the remaining gaps in our understanding. © 2018. Published by The Company of Biologists Ltd.

  17. Energy sources, self-organization, and the origin of life.

    Science.gov (United States)

    Boiteau, Laurent; Pascal, Robert

    2011-02-01

    The emergence and early developments of life are considered from the point of view that contingent events that inevitably marked evolution were accompanied by deterministic driving forces governing the selection between different alternatives. Accordingly, potential energy sources are considered for their propensity to induce self-organization within the scope of the chemical approach to the origin of life. Requirements in terms of quality of energy locate thermal or photochemical activation in the atmosphere as highly likely processes for the formation of activated low-molecular weight organic compounds prone to induce biomolecular self-organization through their ability to deliver quanta of energy matching the needs of early biochemical pathways or the reproduction of self-replicating entities. These lines of reasoning suggest the existence of a direct connection between the free energy content of intermediates of early pathways and the quanta of energy delivered by available sources of energy.

  18. Self-Organized Criticality of Rainfall in Central China

    Directory of Open Access Journals (Sweden)

    Zhiliang Wang

    2012-01-01

    Full Text Available Rainfall is a complexity dynamics process. In this paper, our objective is to find the evidence of self-organized criticality (SOC for rain datasets in China by employing the theory and method of SOC. For this reason, we analyzed the long-term rain records of five meteorological stations in Henan, a central province of China. Three concepts, that is, rain duration, drought duration, accumulated rain amount, are proposed to characterize these rain events processes. We investigate their dynamics property by using scale invariant and found that the long-term rain processes in central China indeed exhibit the feature of self-organized criticality. The proposed theory and method may be suitable to analyze other datasets from different climate zones in China.

  19. Self-organizing neural networks for automatic detection and classification of contrast-enhancing lesions in dynamic MR-mammography

    International Nuclear Information System (INIS)

    Vomweg, T.W.; Teifke, A.; Kauczor, H.U.; Achenbach, T.; Rieker, O.; Schreiber, W.G.; Heitmann, K.R.; Beier, T.; Thelen, M.

    2005-01-01

    Purpose: Investigation and statistical evaluation of 'Self-Organizing Maps', a special type of neural networks in the field of artificial intelligence, classifying contrast enhancing lesions in dynamic MR-mammography. Material and Methods: 176 investigations with proven histology after core biopsy or operation were randomly divided into two groups. Several Self-Organizing Maps were trained by investigations of the first group to detect and classify contrast enhancing lesions in dynamic MR-mammography. Each single pixel's signal/time curve of all patients within the second group was analyzed by the Self-Organizing Maps. The likelihood of malignancy was visualized by color overlays on the MR-images. At last assessment of contrast-enhancing lesions by each different network was rated visually and evaluated statistically. Results: A well balanced neural network achieved a sensitivity of 90.5% and a specificity of 72.2% in predicting malignancy of 88 enhancing lesions. Detailed analysis of false-positive results revealed that every second fibroadenoma showed a 'typical malignant' signal/time curve without any chance to differentiate between fibroadenomas and malignant tissue regarding contrast enhancement alone; but this special group of lesions was represented by a well-defined area of the Self-Organizing Map. Discussion: Self-Organizing Maps are capable of classifying a dynamic signal/time curve as 'typical benign' or 'typical malignant'. Therefore, they can be used as second opinion. In view of the now known localization of fibroadenomas enhancing like malignant tumors at the Self-Organizing Map, these lesions could be passed to further analysis by additional post-processing elements (e.g., based on T2-weighted series or morphology analysis) in the future. (orig.)

  20. Self-organization via active exploration in robotic applications

    Science.gov (United States)

    Ogmen, H.; Prakash, R. V.

    1992-01-01

    We describe a neural network based robotic system. Unlike traditional robotic systems, our approach focussed on non-stationary problems. We indicate that self-organization capability is necessary for any system to operate successfully in a non-stationary environment. We suggest that self-organization should be based on an active exploration process. We investigated neural architectures having novelty sensitivity, selective attention, reinforcement learning, habit formation, flexible criteria categorization properties and analyzed the resulting behavior (consisting of an intelligent initiation of exploration) by computer simulations. While various computer vision researchers acknowledged recently the importance of active processes (Swain and Stricker, 1991), the proposed approaches within the new framework still suffer from a lack of self-organization (Aloimonos and Bandyopadhyay, 1987; Bajcsy, 1988). A self-organizing, neural network based robot (MAVIN) has been recently proposed (Baloch and Waxman, 1991). This robot has the capability of position, size rotation invariant pattern categorization, recognition and pavlovian conditioning. Our robot does not have initially invariant processing properties. The reason for this is the emphasis we put on active exploration. We maintain the point of view that such invariant properties emerge from an internalization of exploratory sensory-motor activity. Rather than coding the equilibria of such mental capabilities, we are seeking to capture its dynamics to understand on the one hand how the emergence of such invariances is possible and on the other hand the dynamics that lead to these invariances. The second point is crucial for an adaptive robot to acquire new invariances in non-stationary environments, as demonstrated by the inverting glass experiments of Helmholtz. We will introduce Pavlovian conditioning circuits in our future work for the precise objective of achieving the generation, coordination, and internalization

  1. Self-Organized Criticality and $1/f$ Noise in Traffic

    OpenAIRE

    Paczuski, Maya; Nagel, Kai

    1996-01-01

    Phantom traffic jams may emerge ``out of nowhere'' from small fluctuations rather than being triggered by large, exceptional events. We show how phantom jams arise in a model of single lane highway traffic, which mimics human driving behavior. Surprisingly, the optimal state of highest efficiency, with the largest throughput, is a critical state with traffic jams of all sizes. We demonstrate that open systems self-organize to the most efficient state. In the model we study, this critical stat...

  2. Self-organization analysis for a nonlocal convective Fisher equation

    Energy Technology Data Exchange (ETDEWEB)

    Cunha, J.A.R. da [Instituto de Fisica, Universidade de Brasilia, 70919-970 Brasilia DF (Brazil); International Center for Condensed Matter Physics, CP 04513, 70919-970 Brasilia DF (Brazil); Penna, A.L.A. [Instituto de Fisica, Universidade de Brasilia, 70919-970 Brasilia DF (Brazil); International Center for Condensed Matter Physics, CP 04513, 70919-970 Brasilia DF (Brazil)], E-mail: penna.andre@gmail.com; Vainstein, M.H. [Instituto de Fisica, Universidade de Brasilia, 70919-970 Brasilia DF (Brazil); International Center for Condensed Matter Physics, CP 04513, 70919-970 Brasilia DF (Brazil); Morgado, R. [International Center for Condensed Matter Physics, CP 04513, 70919-970 Brasilia DF (Brazil); Departamento de Matematica, Universidade de Brasilia, 70910-900 Brasilia DF (Brazil); Oliveira, F.A. [Instituto de Fisica, Universidade de Brasilia, 70919-970 Brasilia DF (Brazil); International Center for Condensed Matter Physics, CP 04513, 70919-970 Brasilia DF (Brazil)

    2009-02-02

    Using both an analytical method and a numerical approach we have investigated pattern formation for a nonlocal convective Fisher equation with constant and spatial velocity fields. We analyze the limits of the influence function due to nonlocal interaction and we obtain the phase diagram of critical velocities v{sub c} as function of the width {mu} of the influence function, which characterize the self-organization of a finite system.

  3. General fluid theories, variational principles and self-organization

    International Nuclear Information System (INIS)

    Mahajan, S.M.

    2002-01-01

    This paper reports two distinct but related advances: (1) The development and application of fluid theories that transcend conventional magnetohydrodynamics (MHD), in particular, theories that are valid in the long-mean-free-path limit and in which pressure anisotropy, heat flow, and arbitrarily strong sheared flows are treated consistently. (2) The discovery of new pressure-confining plasma configurations that are self-organized relaxed states. (author)

  4. Structures formation through self-organized accretion on cosmic strings

    International Nuclear Information System (INIS)

    Murdzek, R.

    2009-01-01

    In this paper, we shall show that the formation of structures through accretion by a cosmic string is driven by a natural feed-back mechanism: a part of the energy radiated by accretions creates a pressure on the accretion disk itself. This phenomenon leads to a nonlinear evolution of the accretion process. Thus, the formation of structures results as a consequence of a self-organized growth of the accreting central object.

  5. Self-organized vortex multiplets in swirling flow

    DEFF Research Database (Denmark)

    Okulov, Valery; Naumov, Igor; Sørensen, Jens Nørkær

    2008-01-01

    The possibility of double vortex multiplet formation at the center of an intensively swirling cocurrent flow generated in a cylindrical container by its rotating lid is reported for the first time. The boundary of the transition to unsteady flow regimes, which arise as a result of the equilibrium...... rotation of self-organized vortex multiplets (triplet, double triplet, double doublet, and quadruplet), has been experimentally determined for cylinders with the aspect (height to radius) ratios in a wider interval than that studied previously....

  6. Architectural Patterns for Self-Organizing Systems-of-Systems

    Science.gov (United States)

    2011-05-01

    show that they are necessary for self-organization to occur. Common Purpose Abraham Maslow proposed a theory on human motivation based on a hierarchy...http://www.hole-in-the-wall.com/abouthiwel.html (accessed October 28, 2010). 21. Maslow , Abraham . 1943. A theory of human motivation. In Psychological...in-the-wall Education Ltd. http://www.hole- in-the-wall.com/abouthiwel.html (accessed October 28, 2010). 22. Maslow , Abraham . 1943. A theory of human

  7. Risk-based fault detection using Self-Organizing Map

    International Nuclear Information System (INIS)

    Yu, Hongyang; Khan, Faisal; Garaniya, Vikram

    2015-01-01

    The complexity of modern systems is increasing rapidly and the dominating relationships among system variables have become highly non-linear. This results in difficulty in the identification of a system's operating states. In turn, this difficulty affects the sensitivity of fault detection and imposes a challenge on ensuring the safety of operation. In recent years, Self-Organizing Maps has gained popularity in system monitoring as a robust non-linear dimensionality reduction tool. Self-Organizing Map is able to capture non-linear variations of the system. Therefore, it is sensitive to the change of a system's states leading to early detection of fault. In this paper, a new approach based on Self-Organizing Map is proposed to detect and assess the risk of fault. In addition, probabilistic analysis is applied to characterize the risk of fault into different levels according to the hazard potential to enable a refined monitoring of the system. The proposed approach is applied on two experimental systems. The results from both systems have shown high sensitivity of the proposed approach in detecting and identifying the root cause of faults. The refined monitoring facilitates the determination of the risk of fault and early deployment of remedial actions and safety measures to minimize the potential impact of fault. - Highlights: • A new approach based on Self-Organizing Map is proposed to detect faults. • Integration of fault detection with risk assessment methodology. • Fault risk characterization into different levels to enable focused system monitoring

  8. Self-organized computation with unreliable, memristive nanodevices

    International Nuclear Information System (INIS)

    Snider, G S

    2007-01-01

    Nanodevices have terrible properties for building Boolean logic systems: high defect rates, high variability, high death rates, drift, and (for the most part) only two terminals. Economical assembly requires that they be dynamical. We argue that strategies aimed at mitigating these limitations, such as defect avoidance/reconfiguration, or applying coding theory to circuit design, present severe scalability and reliability challenges. We instead propose to mitigate device shortcomings and exploit their dynamical character by building self-organizing, self-healing networks that implement massively parallel computations. The key idea is to exploit memristive nanodevice behavior to cheaply implement adaptive, recurrent networks, useful for complex pattern recognition problems. Pulse-based communication allows the designer to make trade-offs between power consumption and processing speed. Self-organization sidesteps the scalability issues of characterization, compilation and configuration. Network dynamics supplies a graceful response to device death. We present simulation results of such a network-a self-organized spatial filter array-that demonstrate its performance as a function of defects and device variation

  9. Innovative Mechanism of Rural Organization Based on Self-Organization

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    The paper analyzes the basic situation of the formation of innovative rural organizations with the form of self-organization;reveals the features of self-organization,including the four aspects of openness of rural organization,innovation of rural organization far away from equilibrium,the non-linear response mechanism of rural organization innovation and the random rise and fall of rural organization innovation.The evolution mechanism of rural organization innovation is revealed according to the growth stage,the ideal stage,the decline and the fall stage.The paper probes into the basic restriction mechanism of the self-organization evaluation of rural organization from three aspects,including target recognition,path dependence and knowledge sharing.The basic measures on cultivating the innovative mechanism of rural organization are put forward.Firstly,constructing the dissipative structure of rural organization innovation;secondly,cultivating the dynamic study capability of rural organization innovation system;thirdly,selecting the step-by-step evolution strategy of rural organization innovation system.

  10. Self-organized synthesis of silver dendritic nanostructures via an electroless metal deposition method

    Science.gov (United States)

    Qiu, T.; Wu, X. L.; Mei, Y. F.; Chu, P. K.; Siu, G. G.

    2005-09-01

    Unique silver dendritic nanostructures, with stems, branches, and leaves, were synthesized with self-organization via a simple electroless metal deposition method in a conventional autoclave containing aqueous HF and AgNO3 solution. Their growth mechanisms are discussed in detail on the basis of a self-assembled localized microscopic electrochemical cell model. A process of diffusion-limited aggregation is suggested for the formation of the silver dendritic nanostructures. This nanostructured material is of great potential to be building blocks for assembling mini-functional devices of the next generation.

  11. [Renal excretion of total porphyrins and hippuric acid in rats].

    Science.gov (United States)

    Gartzke, J; Burck, D

    1986-09-01

    The amounts of total porphyrins, hippuric acid and creatinine, excreted in urine by adult male Wistar rats, exhibited normal distributions for hippuric acid and creatinine, but a bimodal distribution for total porphyrins. This typical distribution of total porphyrins was still observed when creatinine was used as reference parameter. In biochemical and toxicological experiments in rats, the tested parameters should be therefore be investigated for homogeneity.

  12. Dehalogenation of lindane by a variety of porphyrins and corrins.

    OpenAIRE

    Marks, T S; Allpress, J D; Maule, A

    1989-01-01

    The dehalogenation of lindane by a range of hemoproteins, porphyrins, and corrins has been tested under reducing conditions in the presence of dithiothreitol. In addition, a series of porphyrin-metal ion complexes have been prepared and have also been screened for the capacity to dehalogenate lindane. Hemoglobin, hemin, hematin, and chlorophyll alpha all catalyzed the dehalogenation of lindane, as did all of the corrins tested. The porphyrins which did not contain metal centers--coproporphyri...

  13. Environmental conditions during the Frasnian-Fammenian mass extinction inferred from chlorophyll-derived porphyrin biomarkers.

    Science.gov (United States)

    Uveges, B. T.; Junium, C. K.; Cohen, P. A.; Boyer, D.

    2014-12-01

    The widespread mass extinction that occurred across the Frasnian- Fammenian (F-F) boundary was one of the largest losses of biodiversity in Earth's history. The F-F extinction interval is expressed in western New York State by two organic rich black shale intervals known as the Upper and Lower Kellwasser events. These shale intervals are well preserved, thermally immature, and are well constrained in age by conodont biostratigraphy, and thus provide an exceptional opportunity to study the organic material originating from the F-F boundary. In order to test hypotheses about the cause(s) and consequences of the FF biotic crisis, a broader knowledge of the organic carbon sources is needed, and a characterization of the marine primary producer communities will assist in this endeavor. One such avenue is through the study of chlorophyll-derived biomarkers (porphyrins). The organic extracts of powdered shale samples from the Kellwasser horizons were analyzed using HPLC/LC-MSn and diode array UV-Vis spectroscopy. Preliminary data from the Kellwasser intervals reveal only one porphyrin, with a mass (M+H) of 600. The UV-Vis absorbance spectrum (Soret = 405nm, α = 533nm, β = 570nm) of the metallated compound is consistent with that of a vanadyl porphyrin with a free-base (M+H) of 535. Collision-induced mass spectra displays mass losses of 43 and 57 daltons, which are consistent with an extended alkyl chain at the C-8 position. Extended alkyl chains at C-8 are exclusively associated with porphyrins derived from bacteriochlorophyll c, d or e. The presence of bacterioporphyrins is congruous with the episodic presence of anoxic and sulfidic conditions in the photic zone. What is surprising is that a bacteriochlorophyll- derived porphyrin is the most abundant in these sequences, and their study may help to elucidate the conditions surrounding the F-F mass extinction, and further constrain the fluctuations in marine oxygen content in the Upper Devonian Appalachian Basin.

  14. Iron porphyrins doped sol-gel glasses: a chemometric study

    International Nuclear Information System (INIS)

    Sacco, Herica C.; Vidoto, Ednalva A.; Nascimento, Otaciro R.

    2000-01-01

    This paper describes the optimized conditions for preparation of iron porphyrin-template doped silica Fe PDS-template) obtained by the sol-gel process. The following porphyrins (Fe P) were used: Fe TFPP Cl, Fe TDCSPP(Na) 4 Cl and Fe TCPP(Na) 4 Cl. Pyridine or 4-phenylimidazole was used as template. The variables that present significant influence on iron porphyrin loading on xerogel were identified and the values that maximize the iron porphyrin loading on xerogel were established . The variables (Solvent volume, fractional factorial design in two levels, 2 5-1 type, generating 16 total experiments for each Fe P studied. (author)

  15. Iron porphyrins doped sol-gel glasses: a chemometric study

    Energy Technology Data Exchange (ETDEWEB)

    Sacco, Herica C.; Vidoto, Ednalva A.; Nascimento, Otaciro R. [Soap Paulo Univ (USP), Sao Carlos (Brazil). Inst. de Fisica; Biazzotto, Juliana C.; Serra, Osvaldo A.; Iamamoto, Yassuko [Sao Paulo Univ. (USP), Ribeirao Preto, SP (Brazil). Faculdade de Filosofia, Ciencias e Letras; Ciuffi, Katia J.; Mello, Cesar A.; Oliveira, Daniela C. de [Universidade de Franca , SP (Brazil)

    2000-07-01

    This paper describes the optimized conditions for preparation of iron porphyrin-template doped silica Fe (PDS-template) obtained by the sol-gel process. The following porphyrins (Fe P) were used: Fe TFPP Cl, Fe TDCSPP(Na){sub 4}Cl and Fe TCPP(Na){sub 4} Cl. Pyridine or 4-phenylimidazole was used as template. The variables that present significant influence on iron porphyrin loading on xerogel were identified and the values that maximize the iron porphyrin loading on xerogel were established. The variables Solvent volume, fractional factorial design in two levels, 2{sup 5-1} type, generating 16 total experiments for each Fe P studied. (author)

  16. A Study of Porphyrins in Petroleum Source Rocks

    Energy Technology Data Exchange (ETDEWEB)

    Huseby, Berit

    1997-12-31

    This thesis discusses several aspects of porphyrin geochemistry. Degradation experiments have been performed on the Messel oil shale (Eocene, Germany) to obtain information on porphyrins bound or incorporated into macromolecular structures. Thermal heating of the preextracted kerogen by hydrous pyrolysis was used to study the release of porphyrins and their temperature dependent changes during simulated diagenesis and catagenesis. Selective chemical degradation experiments were performed on the preextracted sediment to get more detailed information about porphyrins that are specifically bound to the macromolecular structures via ester bonds. From the heating experiments, in a separate study, the porphyrin nitrogen content in the generated bitumens was compared to the bulk of organic nitrogen compounds in the fraction. The bulk nitrogen contents in the generated bitumens, the water phase and the residual organic matter was recorded to establish the distribution of nitrogen between the kerogen and product phases. Porphyrins as biomarkers were examined in naturally matured Kimmeridge clay source rocks (Upper Jurassic, Norway), and the use of porphyrins as general indicators of maturity was evaluated. Underlying maturity trends in the biomarker data was investigated by Partial Least Squares analysis. Porphyrin as indicators of depositional conditions was also addressed, where the correlations between the (amounts) abundance of nickel and vanadyl porphyrins were mapped together with other descriptors that are assumed to be indicative of redox depositional conditions. 252 refs., 28 figs., 4 tabs.

  17. A Study of Porphyrins in Petroleum Source Rocks

    Energy Technology Data Exchange (ETDEWEB)

    Huseby, Berit

    1996-12-31

    This thesis discusses several aspects of porphyrin geochemistry. Degradation experiments have been performed on the Messel oil shale (Eocene, Germany) to obtain information on porphyrins bound or incorporated into macromolecular structures. Thermal heating of the preextracted kerogen by hydrous pyrolysis was used to study the release of porphyrins and their temperature dependent changes during simulated diagenesis and catagenesis. Selective chemical degradation experiments were performed on the preextracted sediment to get more detailed information about porphyrins that are specifically bound to the macromolecular structures via ester bonds. From the heating experiments, in a separate study, the porphyrin nitrogen content in the generated bitumens was compared to the bulk of organic nitrogen compounds in the fraction. The bulk nitrogen contents in the generated bitumens, the water phase and the residual organic matter was recorded to establish the distribution of nitrogen between the kerogen and product phases. Porphyrins as biomarkers were examined in naturally matured Kimmeridge clay source rocks (Upper Jurassic, Norway), and the use of porphyrins as general indicators of maturity was evaluated. Underlying maturity trends in the biomarker data was investigated by Partial Least Squares analysis. Porphyrin as indicators of depositional conditions was also addressed, where the correlations between the (amounts) abundance of nickel and vanadyl porphyrins were mapped together with other descriptors that are assumed to be indicative of redox depositional conditions. 252 refs., 28 figs., 4 tabs.

  18. Supramolecular chemistry: from molecular information towards self-organization and complex matter

    International Nuclear Information System (INIS)

    Lehn, Jean-Marie

    2004-01-01

    Molecular chemistry has developed a wide range of very powerful procedures for constructing ever more sophisticated molecules from atoms linked by covalent bonds. Beyond molecular chemistry lies supramolecular chemistry, which aims at developing highly complex chemical systems from components interacting via non-covalent intermolecular forces. By the appropriate manipulation of these interactions, supramolecular chemistry became progressively the chemistry of molecular information, involving the storage of information at the molecular level, in the structural features, and its retrieval, transfer, and processing at the supramolecular level, through molecular recognition processes operating via specific interactional algorithms. This has paved the way towards apprehending chemistry also as an information science. Numerous receptors capable of recognizing, i.e. selectively binding, specific substrates have been developed, based on the molecular information stored in the interacting species. Suitably functionalized receptors may perform supramolecular catalysis and selective transport processes. In combination with polymolecular organization, recognition opens ways towards the design of molecular and supramolecular devices based on functional (photoactive, electroactive, ionoactive, etc) components. A step beyond preorganization consists in the design of systems undergoing self-organization, i.e. systems capable of spontaneously generating well-defined supramolecular architectures by self-assembly from their components. Self-organization processes, directed by the molecular information stored in the components and read out at the supramolecular level through specific interactions, represent the operation of programmed chemical systems. They have been implemented for the generation of a variety of discrete functional architectures of either organic or inorganic nature. Self-organization processes also give access to advanced supramolecular materials, such as

  19. First Example of a Lipophilic Porphyrin-Cardanol Hybrid Embedded in a Cardanol-Based Micellar Nanodispersion

    Directory of Open Access Journals (Sweden)

    Giuseppe Vasapollo

    2012-10-01

    Full Text Available Cardanol is a natural and renewable organic raw material obtained as the major chemical component by vacuum distillation of cashew nut shell liquid. In this work a new sustainable procedure for producing cardanol-based micellar nanodispersions having an embedded lipophilic porphyrin itself peripherally functionalized with cardanol substituents (porphyrin-cardanol hybrid has been described for the first time. In particular, cardanol acts as the solvent of the cardanol hybrid porphyrin and cholesterol as well as being the main component of the nanodispersions. In this way a “green” micellar nanodispersion, in which a high percentage of the micellar system is derived from renewable “functional” molecules, has been produced.

  20. Structures and properties of spatially distorted porphyrins

    International Nuclear Information System (INIS)

    Golubchikov, Oleg A; Kuvshinova, Elizaveta M; Pukhovskaya, Svetlana G

    2005-01-01

    The published data on the structures and properties of porphyrins with distorted aromatic macrocycles are generalised and analysed. Data on the crystal structures, spectra and kinetics of formation and dissociation of their coordination derivatives are summarised. It is demonstrated that the distortion of the planar structure of the tetrapyrrole core is one of the most efficient means of controlling spectral, physicochemical and coordination properties of these compounds.

  1. Modeling of Instabilities and Self-organization at the Frictional Interface

    Science.gov (United States)

    Mortazavi, Vahid

    frictional surface to exhibit "self-protection" and "self-healing" properties. Hence, this research is dealing with the fundamental concepts that allow the possibility of the development of a new generation of tribosystem and materials that reinforce such properties. In chapter 2, we investigate instabilities due to the temperature-dependency of the coefficient of friction. The temperature-dependency of the coefficient of friction can have a significant effect on the frictional sliding stability, by leading to the formation of "hot" and "cold" spots on the contacting surfaces. We formulate a stability criterion and perform a case study of a brake disk. In chapter 3, we study frictional running-in. Running-in is a transient period on the onset of the frictional sliding, in which friction and wear decrease to their stationary values. In this research, running-in is interpreted as friction-induced self-organization process. We introduce a theoretical model of running-in and investigate rough profile evolution assuming that its kinetics is driven by two opposite processes or events, i.e., smoothening which is typical for the deformation-driven friction and wear, and roughening which is typical for the adhesion-driven friction and wear. In chapter 4, we investigate the possibility of the so-called Turing-type pattern formation during friction. Turing or reaction-diffusion systems describe variations of spatial concentrations of chemical components with time due to local chemical reactions coupled with diffusion. During friction, the patterns can form at the sliding interface due to the mass transfer (diffusion), heat transfer, various tribochemical reactions, and wear. In chapter 5, we investigate how interfacial patterns including propagating trains of stick and slip zones form due to dynamic sliding instabilities. These can be categorized as self-organized patterns. We treat stick and slip as two phases at the interface, and study the effects related to phase transitions. Our

  2. The photodynamic and non-photodynamic actions of porphyrins

    Directory of Open Access Journals (Sweden)

    S.G. Afonso

    1999-03-01

    Full Text Available Porphyrias are a family of inherited diseases, each associated with a partial defect in one of the enzymes of the heme biosynthetic pathway. In six of the eight porphyrias described, the main clinical manifestation is skin photosensitivity brought about by the action of light on porphyrins, which are deposited in the upper epidermal layer of the skin. Porphyrins absorb light energy intensively in the UV region, and to a lesser extent in the long visible bands, resulting in transitions to excited electronic states. The excited porphyrin may react directly with biological structures (type I reactions or with molecular oxygen, generating excited singlet oxygen (type II reactions. Besides this well-known photodynamic action of porphyrins, a novel light-independent effect of porphyrins has been described. Irradiation of enzymes in the presence of porphyrins mainly induces type I reactions, although type II reactions could also occur, further increasing the direct non-photodynamic effect of porphyrins on proteins and macromolecules. Conformational changes of protein structure are induced by porphyrins in the dark or under UV light, resulting in reduced enzyme activity and increased proteolytic susceptibility. The effect of porphyrins depends not only on their physico-chemical properties but also on the specific site on the protein on which they act. Porphyrin action alters the functionality of the enzymes of the heme biosynthetic pathway exacerbating the metabolic deficiencies in porphyrias. Light energy absorption by porphyrins results in the generation of oxygen reactive species, overcoming the protective cellular mechanisms and leading to molecular, cell and tissue damage, thus amplifying the porphyric picture.

  3. Structures in plasmas and their self-organizations

    International Nuclear Information System (INIS)

    Yoshida, Zensho

    1989-01-01

    This paper is a concise review of the physics of structures. The progress of the structure theory was motivated by the appearances of many different ordered structures that are self-organized through spontaneous dynamics. For typical examples in plasma physics, cited are the MHD equilibria (Taylor relaxed state), the ion acoustic solitons, and the van Kampen modes of continuous-spectrum Langmuir waves. A static theory for the intrinsic structures is developed to clarify the basic difference between the classical orders and the self-organized structures. In linear models, an intrinsic structure is characterized by a singular spectrum of a certain eigenvalue problem. The Taylor relaxed state is characterized by the continuum of the point spectra of the rotational operator. The general MHD equilibrium is related to a nonlinear eigenvalue problem. The soliton is a nonlinear eigenfunction of the Helmholtz-type Bohm equation. The variational expression of an intrinsic structure is characterized by restrictive functionals, which in a dynamical theory, is related to selective conservations. The Taylor relaxed state is obtained by minimizing the magnetic-field energy with conserving the magnetic helicity. This selective dissipation occurs in the fluctuations of kink modes. The soliton is self-organized by the dissipation of the Hamiltonian with keeping the energy approximately constant. The principle of the selective dissipation is logically a generalization of the ergodic hypothesis for the classical order and could be proved in a rigorous way by analyzing the attractor of the dynamical systems, just as the proof the ergodic theorem is obtained by the time-asymptotic analysis of a class of semigroups. (J.P.N.) 85 refs

  4. Self-Organization in Integrated Conservation and Development Initiatives

    Directory of Open Access Journals (Sweden)

    Cristiana Simão Seixas

    2007-11-01

    Full Text Available This paper uses a cooking metaphor to explore key elements (i.e., ingredients for a great meal that contribute to self-organization processes in the context of successful community-based conservation (CBC or integrated conservation and development projects (ICDP. We pose two major questions: (1 What are the key factors that drive peoples' and/or organizations' willingness to take responsibilities and to act? (2 What contributes to community self-organization? In other words, how conservation-development projects originate, evolve, survive or disappear? In order to address these questions we examine trigger events and catalytic elements in several cases among the Equator Prize finalists and short-listed nominees, from both the 2002 and 2004 awards. The Prize recognizes efforts in integrating biodiversity conservation and poverty reduction. We use secondary data in our analysis, including data from several technical reports and scientific papers written about the Equator Prize finalists and short-listed nominees. We observed common ingredients in most projects including: (1 involvement and commitment of key players (including communities, (2 funding, (3 strong leadership, (4 capacity building, (5 partnership with supportive organizations and government, and (6 economic incentives (including alternative livelihood options. We also observed that CBC and ICDP initiatives opportunistically evolve in a multi-level world, in which local communities establish linkages with people and organizations at different political levels, across different geographical scales and for different purposes. We conclude that there is no right 'recipe' to promote community self-organization but often a mix of some of these six ingredients need to come together for 'success' and that one or two ingredients are not sufficient to ensure success. Also the existence of these six ingredients does not guarantee a great meal - the 'chef's' creativity also is critical. That is

  5. Self-organized template formation for quantum dot ordering

    International Nuclear Information System (INIS)

    Noetzel, Richard; Mano, Takaaki; Wolter, Joachim H.

    2004-01-01

    Ordered arrays of quantum dots (QDs) are created by self-organized anisotropic strain engineering of (In,Ga)As/GaAs quantum wire (QWR) superlattice (SL) templates on exactly oriented GaAs (100) substrates by molecular beam epitaxy (MBE). The well-defined one-dimensional arrays of (In,Ga)As QDs formed on top of these templates due to local strain recognition are of excellent structural and optical quality up to room temperature. The QD arrays thus allow for fundamental studies and device operation principles based on single- and multiple carrier- and photon-, and coherent quantum interference effects

  6. Self-organized Criticality Model for Ocean Internal Waves

    International Nuclear Information System (INIS)

    Wang Gang; Hou Yijun; Lin Min; Qiao Fangli

    2009-01-01

    In this paper, we present a simple spring-block model for ocean internal waves based on the self-organized criticality (SOC). The oscillations of the water blocks in the model display power-law behavior with an exponent of -2 in the frequency domain, which is similar to the current and sea water temperature spectra in the actual ocean and the universal Garrett and Munk deep ocean internal wave model [Geophysical Fluid Dynamics 2 (1972) 225; J. Geophys. Res. 80 (1975) 291]. The influence of the ratio of the driving force to the spring coefficient to SOC behaviors in the model is also discussed. (general)

  7. Theoretical and applied aspects of the self-organizing maps

    OpenAIRE

    Cottrell , Marie; Olteanu , Madalina; Rossi , Fabrice; Villa-Vialaneix , Nathalie

    2016-01-01

    International audience; The Self-Organizing Map (SOM) is widely used, easy to implement , has nice properties for data mining by providing both clustering and visual representation. It acts as an extension of the k-means algorithm that preserves as much as possible the topological structure of the data. However, since its conception, the mathematical study of the SOM remains difficult and has be done only in very special cases. In WSOM 2005, Jean-Claude Fort presented the state of the art, th...

  8. Self-Organized Criticality and Mass Extinction in Evolutionary Algorithms

    DEFF Research Database (Denmark)

    Krink, Thiemo; Thomsen, Rene

    2001-01-01

    The gaps in the fossil record gave rise to the hypothesis that evolution proceeded in long periods of stasis, which alternated with occasional, rapid changes that yielded evolutionary progress. One mechanism that could cause these punctuated bursts is the re-colonbation of changing and deserted...... at a critical state between chaos and order, known as self-organized criticality (SOC). Based on this background, we used SOC to control the size of spatial extinction zones in a diffusion model. The SOC selection process was easy to implement and implied only negligible computational costs. Our results show...

  9. Self-organized critical behavior in pinned flux lattices

    International Nuclear Information System (INIS)

    Pla, O.; Nori, F.

    1991-01-01

    We study the response of pinned fluxed lattices, under small perturbations in the driving force, below and close to the pinning-depinning transition. For driving Lorentz forces below F c (the depinning force at which the whole flux lattice slides), the system has instabilities against small force increases, with a power-law distribution characteristic of self-organized criticality. Specifically, D(d)∼d -1,3 , where d is the displacement of a flux line after a very small force increase. We also study the initial stages of the motion of the lattice once the driving force overcomes the pinning forces

  10. Simple lecture demonstrations of instability and self-organization

    International Nuclear Information System (INIS)

    Mayer, V V; Varaksina, E I; Saranin, V A

    2014-01-01

    A dielectric liquid layer with an electric field created inside it is proposed as a means for demonstrating the phenomenon of self-organization. The field is produced by the distributed charge transferred by a corona discharge from the tip to the liquid surface. The theory of the phenomenon is presented. An analogy with the Rayleigh – Taylor instability is drawn and a comparison with the Benard instability is given. The practicality of the method for both natural sciences and the humanities is discussed. (methodological notes)

  11. Study on self organized criticality of China power grid blackouts

    Energy Technology Data Exchange (ETDEWEB)

    Zhao, Xingyong; Zhang, Xiubin; He, Bin [Department of Electrical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240 (China)

    2009-03-15

    Based on the complex system theory and the concept of self organized criticality (SOC) theory, the mechanism of China power grid blackout is studied by analyzing the blackout data in the China power system from 1981 to 2002. The probability distribution functions of various measures of blackout size have a power tail. The analysis of scaled window variance and rescaled range statistics of the time series show moderate long time correlations. The blackout data seem consistent with SOC; the results obtained show that SOC dynamics may play an important role in the dynamics of power systems blackouts. It would be possible to propose novel approaches for understanding and controlling power systems blackouts. (author)

  12. Study on self organized criticality of China power grid blackouts

    Energy Technology Data Exchange (ETDEWEB)

    Zhao Xingyong [Department of Electrical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240 (China)], E-mail: zhaoxingyong@sjtu.edu.cn; Zhang Xiubin; He Bin [Department of Electrical Engineering, Shanghai Jiao Tong University, 800 Dongchuan Road, Minhang District, Shanghai 200240 (China)

    2009-03-15

    Based on the complex system theory and the concept of self organized criticality (SOC) theory, the mechanism of China power grid blackout is studied by analyzing the blackout data in the China power system from 1981 to 2002. The probability distribution functions of various measures of blackout size have a power tail. The analysis of scaled window variance and rescaled range statistics of the time series show moderate long time correlations. The blackout data seem consistent with SOC; the results obtained show that SOC dynamics may play an important role in the dynamics of power systems blackouts. It would be possible to propose novel approaches for understanding and controlling power systems blackouts.

  13. Turbulence and Self-Organization Modeling Astrophysical Objects

    CERN Document Server

    Marov, Mikhail Ya

    2013-01-01

    This book focuses on the development of continuum models of natural turbulent media. It provides a theoretical approach to the solutions of different problems related to the formation, structure and evolution of astrophysical and geophysical objects. A stochastic modeling approach is used in the mathematical treatment of these problems, which reflects self-organization processes in open dissipative systems. The authors also consider examples of ordering for various objects in space throughout their evolutionary processes. This volume is aimed at graduate students and researchers in the fields of mechanics, astrophysics, geophysics, planetary and space science.

  14. Self-organizing maps for measuring similarity of audiovisual speech percepts

    DEFF Research Database (Denmark)

    Bothe, Hans-Heinrich

    The goal of this work is to find a way to measure similarity of audiovisual speech percepts. Phoneme-related self-organizing maps (SOM) with a rectangular basis are trained with data material from a (labeled) video film. For the training, a combination of auditory speech features and corresponding....... Dependent on the training data, these other units may also be contextually immediate neighboring units. The poster demonstrates the idea with text material spoken by one individual subject using a set of simple audio-visual features. The data material for the training process consists of 44 labeled...... sentences in German with a balanced phoneme repertoire. As a result it can be stated that (i) the SOM can be trained to map auditory and visual features in a topology-preserving way and (ii) they show strain due to the influence of other audio-visual units. The SOM can be used to measure similarity amongst...

  15. Resonance Raman study on distorted symmetry of porphyrin in ...

    Indian Academy of Sciences (India)

    The resonance Raman (RR) spectra of nickel octaethyl porphyrin, Ni(OEP), ... Nickel ocatethyl porphyrin, Ni(OEP), plays a central role in studies of the molec- ..... [8] T Kitagawa and Y Ozaki, Structure and bonding (Springer-Verlag, Berlin, ... [10] R S Czernuszewicz, K A Macar, Li Xiao-Yuan, J R Kincaid and T G Spiro, J. Am.

  16. The effects of urea, guanidinium chloride and sorbitol on porphyrin ...

    Indian Academy of Sciences (India)

    This paper compares the inhibition effect of porphyrin aggregation in the presence of urea, guanidinium chloride (Gdn) and sorbitol by molecular dynamics simulation. It demonstrates that porphyrin aggregation increases in sorbitol, but decreases towards addition of urea and Gdn. It shows that urea, Gdn and sorbitol can ...

  17. Self-organizing map classifier for stressed speech recognition

    Science.gov (United States)

    Partila, Pavol; Tovarek, Jaromir; Voznak, Miroslav

    2016-05-01

    This paper presents a method for detecting speech under stress using Self-Organizing Maps. Most people who are exposed to stressful situations can not adequately respond to stimuli. Army, police, and fire department occupy the largest part of the environment that are typical of an increased number of stressful situations. The role of men in action is controlled by the control center. Control commands should be adapted to the psychological state of a man in action. It is known that the psychological changes of the human body are also reflected physiologically, which consequently means the stress effected speech. Therefore, it is clear that the speech stress recognizing system is required in the security forces. One of the possible classifiers, which are popular for its flexibility, is a self-organizing map. It is one type of the artificial neural networks. Flexibility means independence classifier on the character of the input data. This feature is suitable for speech processing. Human Stress can be seen as a kind of emotional state. Mel-frequency cepstral coefficients, LPC coefficients, and prosody features were selected for input data. These coefficients were selected for their sensitivity to emotional changes. The calculation of the parameters was performed on speech recordings, which can be divided into two classes, namely the stress state recordings and normal state recordings. The benefit of the experiment is a method using SOM classifier for stress speech detection. Results showed the advantage of this method, which is input data flexibility.

  18. Optimality and self-organization in river deltas

    Science.gov (United States)

    Tejedor, A.; Longjas, A.; Edmonds, D. A.; Zaliapin, I. V.; Georgiou, T. T.; Rinaldo, A.; Foufoula-Georgiou, E.

    2017-12-01

    Deltas are nourished by channel networks, whose connectivity constrains, if not drives, the evolution, functionality and resilience of these systems. Understanding the coevolution of deltaic channels and their flux organization is crucial for guiding maintenance strategies of these highly stressed systems from a range of anthropogenic activities. However, in contrast to tributary channel networks, to date, no theory has been proposed to explain how deltas self-organize to distribute water and sediment to the delta top and the shoreline. Here, we hypothesize the existence of an optimality principle underlying the self-organized partition of fluxes in delta channel networks. Specifically, we hypothesize that deltas distribute water and sediment fluxes on a given delta topology such as to maximize the diversity of flux delivery to the shoreline. By introducing the concept of nonlocal Entropy Rate (nER) and analyzing ten field deltas in diverse environments, we present evidence that supports our hypothesis, suggesting that delta networks achieve dynamically accessible maxima of their nER. Furthermore, by analyzing six simulated deltas using the Delf3D model and following their topologic and flux re-organization before and after major avulsions, we further study the evolution of nER and confirm our hypothesis. We discuss how optimal flux distributions in terms of nER, when interpreted in terms of resilience, are configurations that reflect an increased ability to withstand perturbations.

  19. Macromolecular target prediction by self-organizing feature maps.

    Science.gov (United States)

    Schneider, Gisbert; Schneider, Petra

    2017-03-01

    Rational drug discovery would greatly benefit from a more nuanced appreciation of the activity of pharmacologically active compounds against a diverse panel of macromolecular targets. Already, computational target-prediction models assist medicinal chemists in library screening, de novo molecular design, optimization of active chemical agents, drug re-purposing, in the spotting of potential undesired off-target activities, and in the 'de-orphaning' of phenotypic screening hits. The self-organizing map (SOM) algorithm has been employed successfully for these and other purposes. Areas covered: The authors recapitulate contemporary artificial neural network methods for macromolecular target prediction, and present the basic SOM algorithm at a conceptual level. Specifically, they highlight consensus target-scoring by the employment of multiple SOMs, and discuss the opportunities and limitations of this technique. Expert opinion: Self-organizing feature maps represent a straightforward approach to ligand clustering and classification. Some of the appeal lies in their conceptual simplicity and broad applicability domain. Despite known algorithmic shortcomings, this computational target prediction concept has been proven to work in prospective settings with high success rates. It represents a prototypic technique for future advances in the in silico identification of the modes of action and macromolecular targets of bioactive molecules.

  20. Self-organizing magnetic beads for biomedical applications

    International Nuclear Information System (INIS)

    Gusenbauer, Markus; Kovacs, Alexander; Reichel, Franz; Exl, Lukas; Bance, Simon; Özelt, Harald; Schrefl, Thomas

    2012-01-01

    In the field of biomedicine magnetic beads are used for drug delivery and to treat hyperthermia. Here we propose to use self-organized bead structures to isolate circulating tumor cells using lab-on-chip technologies. Typically blood flows past microposts functionalized with antibodies for circulating tumor cells. Creating these microposts with interacting magnetic beads makes it possible to tune the geometry in size, position and shape. We developed a simulation tool that combines micromagnetics and discrete particle dynamics, in order to design micropost arrays made of interacting beads. The simulation takes into account the viscous drag of the blood flow, magnetostatic interactions between the magnetic beads and gradient forces from external aligned magnets. We developed a particle–particle particle–mesh method for effective computation of the magnetic force and torque acting on the particles. - Highlights: ► We propose to use self-organized bead structures to isolate circulating tumor cells. ► Flexible ways are important to get a high probability of catching cancer cells. ► The beads make it possible to tune the geometry in size position and shape.

  1. Classification of perovskites with supervised self-organizing maps

    International Nuclear Information System (INIS)

    Kuzmanovski, Igor; Dimitrovska-Lazova, Sandra; Aleksovska, Slobotka

    2007-01-01

    In this work supervised self-organizing maps were used for structural classification of perovskites. For this purpose, structural data for total number of 286 perovskites, belonging to ABO 3 and/or A 2 BB'O 6 types, were collected from literature: 130 of these are cubic, 85 orthorhombic and 71 monoclinic. For classification purposes, the effective ionic radii of the cations, electronegativities of the cations in B-position, as well as, the oxidation states of these cations, were used as input variables. The parameters of the developed models, as well as, the most suitable variables for classification purposes were selected using genetic algorithms. Two-third of all the compounds were used in the training phase. During the optimization process the performances of the models were checked using cross-validation leave-1/10-out. The performances of obtained solutions were checked using the test set composed of the remaining one-third of the compounds. The obtained models for classification of these three classes of perovskite compounds show very good results. Namely, the classification of the compounds in the test set resulted in small number of discrepancies (4.2-6.4%) between the actual crystallographic class and the one predicted by the models. All these results are strong arguments for the validity of supervised self-organizing maps for performing such types of classification. Therefore, the proposed procedure could be successfully used for crystallographic classification of perovskites in one of these three classes

  2. The Self-Organized Archive: SPASE, PDS and Archive Cooperatives

    Science.gov (United States)

    King, T. A.; Hughes, J. S.; Roberts, D. A.; Walker, R. J.; Joy, S. P.

    2005-05-01

    Information systems with high quality metadata enable uses and services which often go beyond the original purpose. There are two types of metadata: annotations which are items that comment on or describe the content of a resource and identification attributes which describe the external properties of the resource itself. For example, annotations may indicate which columns are present in a table of data, whereas an identification attribute would indicate source of the table, such as the observatory, instrument, organization, and data type. When the identification attributes are collected and used as the basis of a search engine, a user can constrain on an attribute, the archive can then self-organize around the constraint, presenting the user with a particular view of the archive. In an archive cooperative where each participating data system or archive may have its own metadata standards, providing a multi-system search engine requires that individual archive metadata be mapped to a broad based standard. To explore how cooperative archives can form a larger self-organized archive we will show how the Space Physics Archive Search and Extract (SPASE) data model will allow different systems to create a cooperative and will use Planetary Data System (PDS) plus existing space physics activities as a demonstration.

  3. On self-organized criticality in nonconserving systems

    International Nuclear Information System (INIS)

    Socolar, J.E.S.; Grinstein, G.; Jayaprakash, C.

    1993-01-01

    Two models with nonconserving dynamics and slow continuous deterministic driving, a stick-slip model (SSM) of earthquake dynamics and a toy forest-fire model (FFM), have recently been argued to show numerical evidence of self-organized criticality (generic, scale-invariant steady states). To determine whether the observed criticality is indeed generic, we study these models as a function of a parameter γ which was implicitly tuned to a special value, γ=1, in their original definitions. In both cases, the maximum Lyapunov exponent vanishes at γ=1. We find that the FFM does not exhibit self-organized criticality for any γ, including γ=1; nor does the SSM with periodic boundary conditions. Both models show evidence of macroscopic periodic oscillations in time for some range of γ values. We suggest that such oscillations may provide a mechanism for the generation of scale-invariant structure in nonconserving systems, and, in particular, that they underlie the criticality previously observed in the SSM with open boundary conditions

  4. SELF-ORGANIZATION OF LEAD SULFIDE QUANTUM DOTS INTO SUPERSTRUCTURES

    Directory of Open Access Journals (Sweden)

    Elena V. Ushakova

    2014-11-01

    Full Text Available The method of X-ray structural analysis (X-ray scattering at small angles is used to show that the structures obtained by self-organization on a substrate of lead sulfide (PbS quantum dots are ordered arrays. Self-organization of quantum dots occurs at slow evaporation of solvent from a cuvette. The cuvette is a thin layer of mica with teflon ring on it. The positions of peaks in SAXS pattern are used to calculate crystal lattice of obtained ordered structures. Such structures have a primitive orthorhombic crystal lattice. Calculated lattice parameters are: a = 21,1 (nm; b = 36,2 (nm; c = 62,5 (nm. Dimensions of structures are tens of micrometers. The spectral properties of PbS QDs superstructures and kinetic parameters of their luminescence are investigated. Absorption band of superstructures is broadened as compared to the absorption band of the quantum dots in solution; the luminescence band is slightly shifted to the red region of the spectrum, while its bandwidth is not changed much. Luminescence lifetime of obtained structures has been significantly decreased in comparison with the isolated quantum dots in solution, but remained the same for the lead sulfide quantum dots close-packed ensembles. Such superstructures can be used to produce solar cells with improved characteristics.

  5. Self-organization in cathode boundary layer discharges in xenon

    International Nuclear Information System (INIS)

    Takano, Nobuhiko; Schoenbach, Karl H

    2006-01-01

    Self-organization of direct current xenon microdischarges in cathode boundary layer configuration has been studied for pressures in the range 30-140 Torr and for currents in the range 50 μA-1 mA. Side-on and end-on observations of the discharge have provided information on the structure and spatial arrangement of the plasma filaments. The regularly spaced filaments, which appear in the normal glow mode when the current is lowered, have a length which is determined by the cathode fall. It varies, dependent on pressure and current, between 50 and 70 μm. The minimum diameter is approximately 80 μm, as determined from the radiative emission in the visible. The filaments are sources of extensive excimer emission. Measurements of the cathode fall length have allowed us to determine the secondary emission coefficient for the discharge in the normal glow mode and to estimate the cathode fall voltage at the transition from normal glow mode to filamentary mode. It was found that the cathode fall voltage at this transition decreases, indicating the onset of additional electron gain processes at the cathode. The regular arrangement of the filaments, self-organization, is assumed to be due to Coulomb interactions between the positively charged cathode fall channels and positive space charges on the surface of the surrounding dielectric spacer. Calculations based on these assumptions showed good agreement with experimentally observed filament patterns

  6. Obtaining parton distribution functions from self-organizing maps

    International Nuclear Information System (INIS)

    Honkanen, H.; Liuti, S.; Loitiere, Y.C.; Brogan, D.; Reynolds, P.

    2007-01-01

    We present an alternative algorithm to global fitting procedures to construct Parton Distribution Functions parametrizations. The proposed algorithm uses Self-Organizing Maps which at variance with the standard Neural Networks, are based on competitive-learning. Self-Organizing Maps generate a non-uniform projection from a high dimensional data space onto a low dimensional one (usually 1 or 2 dimensions) by clustering similar PDF representations together. The SOMs are trained on progressively narrower selections of data samples. The selection criterion is that of convergence towards a neighborhood of the experimental data. All available data sets on deep inelastic scattering in the kinematical region of 0.001 ≤ x ≤ 0.75, and 1 ≤ Q 2 ≤ 100 GeV 2 , with a cut on the final state invariant mass, W 2 ≥ 10 GeV 2 were implemented. The proposed fitting procedure, at variance with standard neural network approaches, allows for an increased control of the systematic bias by enabling the user to directly control the data selection procedure at various stages of the process. (author)

  7. Informational temperature concept and the nature of self-organization

    International Nuclear Information System (INIS)

    Lin, Shu-Kun

    1996-01-01

    Self-organization phenomena are spontaneous processes. Their behavior should be governed by the second law of thermodynamics. The dissipative structure theory of the Prigogine school of thermodynamics claims that open-quotes order out of chaosclose quotes through open-quotes self-organizationclose quotes and challenges the validity of the second law of thermodynamics. Unfortunately this theory is questionable. Therefore we have to reconsider the related fundamental theoretical problems. Informational entropy (S) and information (I) are related by S = S max - I, where S max is the maximum informational entropy. This conforms with the broadly accepted definition that entropy is the information loss. As informational entropy concept has been proved to be useful, it will be convenient to define an informational temperature, T I . This can be related to energy E and the informational entropy S. Information registration is a process of ΔI > 0, or ΔS 0). Therefore, T I is negative, and has the opposite sign of the conventional thermodynamic temperature, T. This concept is useful for clarifying the concepts of open-quotes orderclose quotes and open-quotes disorderclose quotes of static structures and characterizing many typical information loss processes of self-organization

  8. Self-organization of turbulence. A brief review of self-organization with particular reference to hydrodynamic and magnetohydrodynamic turbulence

    Energy Technology Data Exchange (ETDEWEB)

    Hasegawa, A [Bell Labs., Murray Hill, NJ (USA)

    1982-02-01

    Theoretical treatments of turbulence in fluids and plasmas often assume that the turbulence is isotropic and homogeneous. It is also often considered that turbulence produces uniformly distributed chaos, even when starting with a coherent initial condition. Recently, however, phenomena which do not obey these classic concepts have emerged. For example, in two-dimensional Navier-Stokes turbulence, an organized flow or structure is found to appear even from a chaotic initial condition. The author attempts to review some of the recent developments of a phenomenon called self-organization in the field of hydrodynamics and plasma physics.

  9. One-pot synthesis of gold nanoparticles using tetradentate porphyrins

    International Nuclear Information System (INIS)

    Canitez, Fatma K.; Yavuz, Mustafa S.; Ozturk, Ramazan

    2011-01-01

    In this study, the meso-tetra (p-hydroxyphenyl) porphyrin and meso-tetra (m-hydroxyphenyl) porphyrin were coated on to gold nanoparticles (AuNPs) via thioacetate anchors which easily dissociate to form S–Au bonds. 4-tert-butyl phenyl thioacetate-AuNPs were prepared and used as a monodentate passivant to control the size of the tetradentate porphyrin-AuNPs. The porphyrin-coated AuNPs were characterized by UV–Vis, TEM, XRD, and XPS analyses. The tetradentate porphyrin-AuNPs size is within a range of 5–15 nm in diameter with exotic shapes. The plausible network formation for AuNP-p-TPP-SAc and the capping structure of the AuNP-m-TPP-SAc have been suggested.

  10. Plate Tectonics as a Far-From-Equilibrium Self-Organized Dissipative System

    Science.gov (United States)

    Anderson, D. L.

    2001-12-01

    A fluid above the critical Rayleigh number is far from equilibrium and spontaneously organizes itself into patterns involving the collective motion of large numbers of molecules which are resisted by the viscosity of the fluid. No external template is involved in forming the pattern. In 1928 Pearson showed that Bénard's experiments were driven by variations in surface tension at the top of the fluid and the surface motions drove convection in the fluid. In this case, the surface organized itself AND the underlying fluid. Both internal buoyancy driven flow and flow driven by surface forces can be far-from-equilibrium self-organized open systems that receive energy and matter from the environment. In the Earth, the cold thermal boundary layer at the surface drives plate tectonics and introduces temperature, shear and pressure gradients into the mantle that drive mantle convection. The mantle provides energy and material but may not provide the template. Plate tectonics is therefore a candidate for a far-from-equilibrium dissipative self-organizing system. Alternatively, one could view mantle convection as the self-organized system and the plates as simply the surface manifestation. Lithospheric architecture also imposes lateral temperature gradients onto the mantle which can drive and organize flow. Far-from-equilibrium self-organization requires; an open system, interacting parts, nonlinearities or feedbacks, an outside steady source of energy or matter, multiple possible states and a source of dissipation. In uniform fluids viscosity is the source of dissipation. Sources of dissipation in the plate system include bending, breaking, folding, shearing, tearing, collision and basal drag. These can change rapidly, in contrast to plate driving forces, and introduce the sort of fluctuations that can reorganize far-from-equilibrium systems. Global plate reorganizations can alternatively be thought of as convective overturns of the mantle, or thermal weakening of plates

  11. Measurement of urinary porphyrins and porphyrin precursors in Dutch hospital laboratories: a review of quality control over 5 years.

    NARCIS (Netherlands)

    Zuijderhoudt, F.M.; Weykamp, C.W.; Willems, J.L.

    2003-01-01

    BACKGROUND: We evaluated a quality control scheme for the measurement of urinary uroporphyrin, coproporphyrin, total urinary porphyrins and precursors of urinary porphyrins, delta-aminolevulinic acid and porphobilinogen that was performed in The Netherlands during a period of 5 years. METHODS: Six

  12. Controlled intracellular generation of reactive oxygen species in human mesenchymal stem cells using porphyrin conjugated nanoparticles

    Science.gov (United States)

    Lavado, Andrea S.; Chauhan, Veeren M.; Alhaj Zen, Amer; Giuntini, Francesca; Jones, D. Rhodri E.; Boyle, Ross W.; Beeby, Andrew; Chan, Weng C.; Aylott, Jonathan W.

    2015-08-01

    (ii) porphyrin and high numbers of irradiations of excitation light were found to generate greater amounts of ROS. A novel dye, which is transformed into fluorescent 7-hydroxy-4-trifluoromethyl-coumarin in the presence of hydrogen peroxide, provided an indirect indicator for cumulative ROS production. The mitochondrial membrane potential was monitored to investigate the destructive effect of increased intracellular ROS production. Flow cytometric analysis of nanoparticle treated hMSCs suggested irradiation with excitation light signalled controlled apoptotic cell death, rather than uncontrolled necrotic cell death. Increased intracellular ROS production did not induce phenotypic changes in hMSC subcultures. Electronic supplementary information (ESI) available: Materials and experimental methods for the synthesis of (1) positively charged alkyne functionalized nanoparticles (2) Zn(ii) and Cu(ii) centred porphyrin (3); conjugating porphyrins to alkyne-functionalized nanoparticles via click chemistry (4) nanoparticle characterisation (size charge and fluorescence), (5) synthesis of BPTFMC (6) hMSC collection, storage and preparation (7) delivery of porphyrin functionalized nanoparticles (8) staining mitochondria, cumulative ROS production and determination of nanoparticles subcellular localisation (9) fluorescence microscopy and controlled irradiation of hMSCs (10) flow cytometry and controlled irradiation using a custom built irradiator. In addition, results highlighting: (1) nanoparticles emission spectra, size and charge, (2) BPTFMC fluorescence response and (3) hMSCs following light irradiation using flow cytometry. See DOI: 10.1039/c5nr00795j

  13. Porphyrin synthesized from cashew nut shell liquid as part of a novel superparamagnetic fluorescence nanosystem

    Energy Technology Data Exchange (ETDEWEB)

    Clemente, C. S.; Ribeiro, V. G. P.; Sousa, J. E. A.; Maia, F. J. N.; Barreto, A. C. H. [Universidade Federal do Ceara, Laboratorio de Produtos e Tecnologia em Processos (LPT) (Brazil); Andrade, N. F. [Universidade Federal do Ceara, Departamento de Fisica (Brazil); Denardin, J. C. [Universidad de Santiago de Chile (USACH), Departamento de Fisica (Chile); Mele, G. [Universita del Salento, Dipartimento di Ingegneria dell' Innovazione (Italy); Carbone, L. [NNL, Istituto Nanoscienze UOS Lecce (Italy); Mazzetto, S. E. [Universidade Federal do Ceara, Laboratorio de Produtos e Tecnologia em Processos (LPT) (Brazil); Fechine, P. B. A., E-mail: fechine@ufc.br [Universidade Federal do Ceara (UFC), Grupo de Quimica de Materiais Avancados (GQMAT), Departamento de Quimica Analitica e Fisico-Quimica (Brazil)

    2013-06-15

    Magnetic Fe{sub 3}O{sub 4} nanoparticles with average size approximately 11 nm were first oleic acid coated to interact with the meso-porphyrin derivative from CNSL. This procedure produced a novel superparamagnetic fluorescent nanosystem (SFN) linked by van der Waals interactions. This system was characterized by transmission electron microscope, infrared spectroscopy, thermogravimetric analysis, magnetic measurements, UV-Vis absorption, and fluorescence emission measurements. These results showed that SFN has good thermal stability, excellent magnetization, and nanosized dimensions ({approx}13 nm). It exhibited emission peaks at 668 and 725 nm with a maximum emission at 467 nm of excitation wavelength. The type of interaction between porphyrin and magnetic nanoparticles allowed to obtain a material with interesting optical properties which might be used as an imaging agent for contrast in cells as well as heterogeneous photocatalysis.

  14. Comparison of brass alloys composition by laser-induced breakdown spectroscopy and self-organizing maps

    Energy Technology Data Exchange (ETDEWEB)

    Pagnotta, Stefano; Grifoni, Emanuela; Legnaioli, Stefano [Applied and Laser Spectroscopy Laboratory, ICCOM-CNR, Research Area of Pisa, Via G. Moruzzi 1, 56124 Pisa (Italy); Lezzerini, Marco [Department of Earth Sciences, University of Pisa, Via S. Maria 53, 56126 Pisa (Italy); Lorenzetti, Giulia [Applied and Laser Spectroscopy Laboratory, ICCOM-CNR, Research Area of Pisa, Via G. Moruzzi 1, 56124 Pisa (Italy); Palleschi, Vincenzo, E-mail: vincenzo.palleschi@cnr.it [Applied and Laser Spectroscopy Laboratory, ICCOM-CNR, Research Area of Pisa, Via G. Moruzzi 1, 56124 Pisa (Italy); Department of Civilizations and Forms of Knowledge, University of Pisa, Via L. Galvani 1, 56126 Pisa (Italy)

    2015-01-01

    In this paper we face the problem of assessing similarities in the composition of different metallic alloys, using the laser-induced breakdown spectroscopy technique. The possibility of determining the degree of similarity through the use of artificial neural networks and self-organizing maps is discussed. As an example, we present a case study involving the comparison of two historical brass samples, very similar in their composition. The results of the paper can be extended to many other situations, not necessarily associated with cultural heritage and archeological studies, where objects with similar composition have to be compared. - Highlights: • A method for assessing the similarity of materials analyzed by LIBS is proposed. • Two very similar fragments of historical brass were analyzed. • Using a simple artificial neural network the composition of the two alloys was determined. • The composition of the two brass alloys was the same within the experimental error. • Using self-organizing maps, the probability of the alloys to have the same composition was assessed.

  15. Self-organized nanostructures in silicon and glass for MEMS, MOEMS and BioMEMS

    International Nuclear Information System (INIS)

    Lilienthal, K.; Fischer, M.; Stubenrauch, M.; Schober, A.

    2010-01-01

    The utilization of self-organization in the process workflows for Micro-Electro-Mechanical-Systems (MEMS) and their derivatives is a smart way to get large areas of nanostructured surfaces for various applications. The generation of nano-masking spots by self-organizing residues in the plasma can lead to needle- or tube-like structures on the surface after (deep-) reactive ion etching. With lengths of 3 up to 25 μm and 150 up to 500 nm in diameter for silicon broad applications in the fields of micro fluidics with catalysts, micro-optical or mechanical mountings or carrier wafer bonding in microelectronics are possible. Now, we also developed dry etching processes for fused silica which shows analogue properties to 'Black Silicon' and investigated these glass nanostructures by a first parameter study to identify new usable structures and hybrids. This innovative starting point allows the transfer of 'Black Silicon' technologies and its applications to another important material class in micro- and nanotechnologies, fused silica.

  16. Self-organized nanostructures in silicon and glass for MEMS, MOEMS and BioMEMS

    Energy Technology Data Exchange (ETDEWEB)

    Lilienthal, K., E-mail: katharina.lilienthal@tu-ilmenau.de [Research Group ' Micro fluidics and Biosensors' , Ilmenau University of Technology, Institute of Micro- and Nanotechnologies, D-98693 Ilmenau (Germany); Fischer, M. [Research Group ' Micro fluidics and Biosensors' , Ilmenau University of Technology, Institute of Micro- and Nanotechnologies, D-98693 Ilmenau (Germany); Stubenrauch, M. [Department of Micromechanical Systems, Ilmenau University of Technology, Institute of Micro- and Nanotechnologies, D-98693 Ilmenau (Germany); Schober, A. [Research Group ' Micro fluidics and Biosensors' , Ilmenau University of Technology, Institute of Micro- and Nanotechnologies, D-98693 Ilmenau (Germany)

    2010-05-25

    The utilization of self-organization in the process workflows for Micro-Electro-Mechanical-Systems (MEMS) and their derivatives is a smart way to get large areas of nanostructured surfaces for various applications. The generation of nano-masking spots by self-organizing residues in the plasma can lead to needle- or tube-like structures on the surface after (deep-) reactive ion etching. With lengths of 3 up to 25 {mu}m and 150 up to 500 nm in diameter for silicon broad applications in the fields of micro fluidics with catalysts, micro-optical or mechanical mountings or carrier wafer bonding in microelectronics are possible. Now, we also developed dry etching processes for fused silica which shows analogue properties to 'Black Silicon' and investigated these glass nanostructures by a first parameter study to identify new usable structures and hybrids. This innovative starting point allows the transfer of 'Black Silicon' technologies and its applications to another important material class in micro- and nanotechnologies, fused silica.

  17. Surface engineering with ion beams: from self-organized nanostructures to ultra-smooth surfaces

    International Nuclear Information System (INIS)

    Frost, F.; Ziberi, B.; Schindler, A.; Rauschenbach, B.

    2008-01-01

    Low-energy ion-beam sputtering, i.e. the removal of atoms from a surface due to the impact of energetic ions or atoms, is an inherent part of numerous surface processing techniques. Besides the actual removal of material, this surface erosion process often results in a pronounced alteration of the surface topography. Under certain conditions, sputtering results in the formation of well-ordered patterns. This self-organized pattern formation is related to a surface instability between curvature-dependent sputtering that roughens the surface and smoothing by different surface relaxation mechanisms. If the evolution of surface topography is dominated by relaxation mechanisms, surface smoothing can occur. In this presentation the current status of self-organized pattern formation and surface smoothing by low-energy ion-beam erosion of Si and Ge is summarized. In detail it will be shown that a multitude of patterns as well as ultra-smooth surfaces can develop, particularly on Si surfaces. Additionally, the most important experimental parameters that control these processes are discussed. Finally, examples are given for the application of low-energy ion beams as a novel approach for passive optical device engineering for many advanced optical applications. (orig.)

  18. Comparison of brass alloys composition by laser-induced breakdown spectroscopy and self-organizing maps

    International Nuclear Information System (INIS)

    Pagnotta, Stefano; Grifoni, Emanuela; Legnaioli, Stefano; Lezzerini, Marco; Lorenzetti, Giulia; Palleschi, Vincenzo

    2015-01-01

    In this paper we face the problem of assessing similarities in the composition of different metallic alloys, using the laser-induced breakdown spectroscopy technique. The possibility of determining the degree of similarity through the use of artificial neural networks and self-organizing maps is discussed. As an example, we present a case study involving the comparison of two historical brass samples, very similar in their composition. The results of the paper can be extended to many other situations, not necessarily associated with cultural heritage and archeological studies, where objects with similar composition have to be compared. - Highlights: • A method for assessing the similarity of materials analyzed by LIBS is proposed. • Two very similar fragments of historical brass were analyzed. • Using a simple artificial neural network the composition of the two alloys was determined. • The composition of the two brass alloys was the same within the experimental error. • Using self-organizing maps, the probability of the alloys to have the same composition was assessed

  19. Thiophene fused azacoronenes: regioselective synthesis, self organization, charge transport, and its incorporation in conjugated polymers

    Science.gov (United States)

    Liu, Yi; He, Bo

    2015-09-15

    A regioselective synthesis of an azacoronene fused with two peripheral thiophene groups has been realized through a concise synthetic route. The resulting thienoazacoronene (TAC) derivatives show high degree of self-organization in solution, in single crystals, in the bulk, and in spuncast thin films. Spuncast thin film field-effect transistors of the TACs exhibited mobilities up to 0.028 cm.sup.2V.sup.-1 S.sup.-1, which is among the top field effect mobilities for solution processed discotic materials. Organic photovoltaic devices using TAC-containing conjugated polymers as the donor material exhibited a high open-circuit voltage of 0.89 V, which was ascribable to TAC's low-lying highest occupied molecular orbital energy level.

  20. Modeling of self-organization of two-dimensional ordered structures

    Energy Technology Data Exchange (ETDEWEB)

    Egorov, V V; Garmay, Y P; Shaldzhyan, A A; Vasin, A V; Kiselev, O I [Research Institute of Influenza of the Ministry of Health and Social Development of the Russian Federation, Prof. Popova st. 15/17, St-Petersburg (Russian Federation); Lebedev, D V [Department of Molecular and Radiation Biophysics Petersburg Nuclear Physics Institute of the Russian Academy of Science, Orlova Roscha, Gatchina, Leningrad Region (Russian Federation); Grudinina, N A, E-mail: toizeg@gmail.com [Institute of Experimental Medicine, North-Western Branch of the Russian Academy of Medical Science, 12, Akademika Pavlova st., St-Petersburg (Russian Federation)

    2011-04-01

    The problem of the search of biostructures capable to self-organization is quite urgent considering the prospects of application of nanostructured biomaterials as components of composite materials in transplantology and optics as well as 'scaffolds' for the synthesis of nanostructured materials based on inorganic particles. The given study focuses on modeling of the growth of structures using the cellular automata with a set of states of the two values (0 and 1), with the value corresponding to the state is determined by the contribution of 'the closest neighbor' (by the probability of induction of the state of the nextgeneration in the direction of the interaction) and the geometry of the field isdetermined by the vector of the direction of the particle and the direction of the interaction.

  1. Is there a self-organization principle of river deltas?

    Science.gov (United States)

    Tejedor, Alejandro; Longjas, Anthony; Foufoula-Georgiou, Efi

    2017-04-01

    River deltas are known to possess a complex topological and flux-partitioning structure which has recently been quantified using spectral graph theory [Tejedor et al., 2015a,b]. By analysis of real and simulated deltas it has also been shown that there is promise in formalizing relationships between this topo-dynamic delta structure and the underlying delta forming processes [e.g., Tejedor et al., 2016]. The question we pose here is whether there exists a first order organizational principle behind the self-organization of river deltas and whether this principle can be unraveled from the co-evolving topo-dynamic structure encoded in the delta planform. To answer this question, we introduce a new metric, the nonlocal Entropy Rate (nER) that captures the information content of a delta network in terms of the degree of uncertainty in delivering fluxes from any point of the network to the shoreline. We hypothesize that if the "guiding principle" of undisturbed deltas is to efficiently and robustly build land by increasing the diversity of their flux pathways over the delta plane, then they would exhibit maximum nonlocal Entropy Rate at states at which geometry and flux dynamics are at equilibrium. At the same time, their nER would be non-optimal at transient states, such as before and after major avulsions during which topology and dynamics adjust to each other to reach a new equilibrium state. We will present our results for field and simulated deltas, which confirm this hypothesis and open up new ways of thinking about self-organization, complexity and robustness in river deltas. One particular connection of interest might have important implications since entropy rate and resilience are related by the fluctuation theorem [Demetrius and Manke, 2005], and therefore our results suggest that deltas might in fact self-organize to maximize their resilience to structural and dynamic perturbations. References: Tejedor, A., A. Longjas, I. Zaliapin, and E. Foufoula

  2. Supramolecular tetracluster-cobalt porphyrin: a four-electron transfer catalyst for dioxygen reduction

    International Nuclear Information System (INIS)

    Winnischofer, Herbert; Otake, Vesper Yoshiyuki; Dovidauskas, Sergio; Nakamura, Marcelo; Toma, Henrique Eisi; Araki, Koiti

    2004-01-01

    Electrocatalysis by CoTCP {CoTCP meso-tetrakis(4-pyridyl)porphynatocobalt(III)} coordinated to four [Ru 3 (μ 3 -O)(μ 2 -CH 3 CO 2 ) 6 (py) 2 ] + complexes in the four-electron reduction of dioxygen, has been unequivocally demonstrated in this work by using two types of electrostatically assembled films of CoTCP and anionic zinc or free-base meso-tetrakis(4-sulfonatophenyl)porphyrins (ZnTPPS or H 2 TPPS), as well as, by employing different electrode materials. An enhanced electrocatalytic activity has been observed, in spite of the fact that the typical bis-coordination of dioxygen to two cobalt porphyrin sites is precluded in such CoTCP/ZnTPPS or CoTCP/H 2 TPPS bilayered films. In addition, negligible ring currents have been observed in ring-disk voltammetry measurements, yielding straight Levich and Koutecky-Levich plots, whose slopes approached the theoretical 4e - curve in air, or in O 2 saturated solutions (pH 3-5). The use of gold instead of glassy carbon (GC) electrodes has not also significantly perturbed the mechanism. By ruling out any influence from the electrode materials, a well known critical point in the catalysis by cobalt porphyrins, the results have shown that CoTCP is acting as a four-electron transfer catalyst for dioxygen reduction. Also, by excluding the possibility of bis-coordination of dioxygen, it was shown that the electronic and supramolecular effects exerted by the peripheral ruthenium cluster complexes should be triggering the four-electron catalytic activity of the cobalt porphyrin center

  3. Porphyrin-magnetite nanoconjugates for biological imaging

    LENUS (Irish Health Repository)

    Nowostawska, Malgorzata

    2011-04-08

    Abstract Background The use of silica coated magnetic nanoparticles as contrast agents has resulted in the production of highly stable, non-toxic solutions that can be manipulated via an external magnetic field. As a result, the interaction of these nanocomposites with cells is of vital importance in understanding their behaviour and biocompatibility. Here we report the preparation, characterisation and potential application of new "two-in-one" magnetic fluorescent nanocomposites composed of silica-coated magnetite nanoparticles covalently linked to a porphyrin moiety. Method The experiments were performed by administering porphyrin functionalised silica-coated magnetite nanoparticles to THP-1 cells, a human acute monocytic leukaemia cell line. Cells were cultured in RPMI 1640 medium with 25 mM HEPES supplemented with heat-inactivated foetal bovine serum (FBS). Results We have synthesised, characterised and analysed in vitro, a new multimodal (magnetic and fluorescent) porphyrin magnetic nanoparticle composite (PMNC). Initial co-incubation experiments performed with THP-1 macrophage cells were promising; however the PMNC photobleached under confocal microscopy study. β-mercaptoethanol (β-ME) was employed to counteract this problem and resulted not only in enhanced fluorescence emission, but also allowed for elongated imaging and increased exposure times of the PMNC in a cellular environment. Conclusion Our experiments have demonstrated that β-ME visibly enhances the emission intensity. No deleterious effects to the cells were witnessed upon co-incubation with β-ME alone and no increases in background fluorescence were recorded. These results should present an interest for further development of in vitro biological imaging techniques.

  4. Porphyrin Protonation Studied by Magnetic Circular Dichroism

    Czech Academy of Sciences Publication Activity Database

    Štěpánek, Petr; Andrushchenko, Valery; Ruud, K.; Bouř, Petr

    2012-01-01

    Roč. 116, č. 1 (2012), s. 778-783 ISSN 1089-5639 R&D Projects: GA ČR GAP208/11/0105; GA ČR GA203/09/2037; GA ČR GAP208/10/0559; GA MŠk(CZ) LH11033 Institutional research plan: CEZ:AV0Z40550506 Keywords : magnetic circular dichroism ( MCD ) * TPPS * spectra simulations * porphyrin protonation Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 2.771, year: 2012

  5. Valence electronic properties of porphyrin derivatives.

    Science.gov (United States)

    Stenuit, G; Castellarin-Cudia, C; Plekan, O; Feyer, V; Prince, K C; Goldoni, A; Umari, P

    2010-09-28

    We present a combined experimental and theoretical investigation of the valence electronic structure of porphyrin-derived molecules. The valence photoemission spectra of the free-base tetraphenylporphyrin and of the octaethylporphyrin molecule were measured using synchrotron radiation and compared with theoretical spectra calculated using the GW method and the density-functional method within the generalized gradient approximation. Only the GW results could reproduce the experimental data. We found that the contribution to the orbital energies due to electronic correlations has the same linear behavior in both molecules, with larger deviations in the vicinity of the HOMO level. This shows the importance of adequate treatment of electronic correlations in these organic systems.

  6. Self-organization of mesoscopic silver wires by electrochemical deposition

    Directory of Open Access Journals (Sweden)

    Sheng Zhong

    2014-08-01

    Full Text Available Long, straight mesoscale silver wires have been fabricated from AgNO3 electrolyte via electrodeposition without the help of templates, additives, and surfactants. Although the wire growth speed is very fast due to growth under non-equilibrium conditions, the wire morphology is regular and uniform in diameter. Structural studies reveal that the wires are single-crystalline, with the [112] direction as the growth direction. A possible growth mechanism is suggested. Auger depth profile measurements show that the wires are stable against oxidation under ambient conditions. This unique system provides a convenient way for the study of self-organization in electrochemical environments as well as for the fabrication of highly-ordered, single-crystalline metal nanowires.

  7. Filamentary structures that self-organize due to adhesion

    Science.gov (United States)

    Sengab, A.; Picu, R. C.

    2018-03-01

    We study the self-organization of random collections of elastic filaments that interact adhesively. The evolution from an initial fully random quasi-two-dimensional state is controlled by filament elasticity, adhesion and interfilament friction, and excluded volume. Three outcomes are possible: the system may remain locked in the initial state, may organize into isolated fiber bundles, or may form a stable, connected network of bundles. The range of system parameters leading to each of these states is identified. The network of bundles is subisostatic and is stabilized by prestressed triangular features forming at bundle-to-bundle nodes, similar to the situation in foams. Interfiber friction promotes locking and expands the parametric range of nonevolving systems.

  8. Self-organized plasmonic metasurfaces for all-optical modulation

    Science.gov (United States)

    Della Valle, G.; Polli, D.; Biagioni, P.; Martella, C.; Giordano, M. C.; Finazzi, M.; Longhi, S.; Duò, L.; Cerullo, G.; Buatier de Mongeot, F.

    2015-06-01

    We experimentally demonstrate a self-organized metasurface with a polarization dependent transmittance that can be dynamically controlled by optical means. The configuration consists of tightly packed plasmonic nanowires with a large dispersion of width and height produced by the defocused ion-beam sputtering of a thin gold film supported on a silica glass. Our results are quantitatively interpreted according to a theoretical model based on the thermomodulational nonlinearity of gold and a finite-element numerical analysis of the absorption and scattering cross-sections of the nanowires. We found that the polarization sensitivity of the metasurface can be strongly enhanced by pumping with ultrashort laser pulses, leading to potential applications in ultrafast all-optical modulation and switching of light.

  9. Self-organized critical model for protein folding

    Science.gov (United States)

    Moret, M. A.

    2011-09-01

    The major factor that drives a protein toward collapse and folding is the hydrophobic effect. At the folding process a hydrophobic core is shielded by the solvent-accessible surface area of the protein. We study the fractal behavior of 5526 protein structures present in the Brookhaven Protein Data Bank. Power laws of protein mass, volume and solvent-accessible surface area are measured independently. The present findings indicate that self-organized criticality is an alternative explanation for the protein folding. Also we note that the protein packing is an independent and constant value because the self-similar behavior of the volumes and protein masses have the same fractal dimension. This power law guarantees that a protein is a complex system. From the analyzed data, q-Gaussian distributions seem to fit well this class of systems.

  10. Self-Organized Criticality Theory Model of Thermal Sandpile

    International Nuclear Information System (INIS)

    Peng Xiao-Dong; Qu Hong-Peng; Xu Jian-Qiang; Han Zui-Jiao

    2015-01-01

    A self-organized criticality model of a thermal sandpile is formulated for the first time to simulate the dynamic process with interaction between avalanche events on the fast time scale and diffusive transports on the slow time scale. The main characteristics of the model are that both particle and energy avalanches of sand grains are considered simultaneously. Properties of intermittent transport and improved confinement are analyzed in detail. The results imply that the intermittent phenomenon such as blobs in the low confinement mode as well as edge localized modes in the high confinement mode observed in tokamak experiments are not only determined by the edge plasma physics, but also affected by the core plasma dynamics. (paper)

  11. Experimental investigation of multiple self-organized structures in plasma

    International Nuclear Information System (INIS)

    Ivan, L. M.; Gaman, C.; Aflori, M.; Mihai-Plugaru, M.; Dimitriu, D.G.; Lozneanu, E.; Sanduloviciu, M.

    2005-01-01

    Complex space charge configuration emerges by self-organization in front of an electrode immersed in plasma when its potential is increased at a certain critical value. Consisting from a nucleus protected from the surrounding plasma by an electrical double layer, the complexity reveals an internal structure and behaviour which remind us primitive organisms. Thus the complexity is not static but stationary open system in which continuous decay is constantly compensated by substance and energy from the surrounding plasma. Endowed with a special kind of memory the complexity can work as an intelligent multifunctional system and consequently it is also able to perform innovations after selective interaction with an environment in evolution. Additionally, the complexity is able to replicate by division. (authors)

  12. Weighted Evolving Networks with Self-organized Communities

    International Nuclear Information System (INIS)

    Xie Zhou; Wang Xiaofan; Li Xiang

    2008-01-01

    In order to describe the self-organization of communities in the evolution of weighted networks, we propose a new evolving model for weighted community-structured networks with the preferential mechanisms functioned in different levels according to community sizes and node strengths, respectively. Theoretical analyses and numerical simulations show that our model captures power-law distributions of community sizes, node strengths, and link weights, with tunable exponents of ν ≥ 1, γ > 2, and α > 2, respectively, sharing large clustering coefficients and scaling clustering spectra, and covering the range from disassortative networks to assortative networks. Finally, we apply our new model to the scientific co-authorship networks with both their weighted and unweighted datasets to verify its effectiveness

  13. Magnetic reconnection and self-organized plasma systems

    International Nuclear Information System (INIS)

    Yamada, Masaaki; Ji, Hantao

    2000-01-01

    In this paper the recent results from the Magnetic Reconnection Experiment (MRX) at PPPL are discussed along with their relationship to observations from solar flares, the magnetosphere, and current carrying pinch discharges such as tokamaks, reversed field pinches, spheromaks and field reversed configurations. It is found that the reconnection speed decreases as the angle of merging field lines decreases, consistent with the well-established observation in the dayside magnetosphere. This observation can also provide a qualitative interpretation of a generally observed trend in pinch plasmas, namely that magnetic field diffuses (or reconnects) faster when magnetic shear is larger. A recently conceived research project, SPIRIT (Self-organized Plasma with Induction, Reconnection, and Injection Techniques), will also be discussed. (author)

  14. Dynamical quenching and annealing in self-organization multiagent models

    Science.gov (United States)

    Burgos, E.; Ceva, Horacio; Perazzo, R. P.

    2001-07-01

    We study the dynamics of a generalized minority game (GMG) and of the bar attendance model (BAM) in which a number of agents self-organize to match an attendance that is fixed externally as a control parameter. We compare the usual dynamics used for the minority game with one for the BAM that makes a better use of the available information. We study the asymptotic states reached in both frameworks. We show that states that can be assimilated to either thermodynamic equilibrium or quenched configurations can appear in both models, but with different settings. We discuss the relevance of the parameter G that measures the value of the prize for winning in units of the fine for losing. We also provide an annealing protocol by which the quenched configurations of the GMG can progressively be modified to reach an asymptotic equilibrium state that coincides with the one obtained with the BAM.

  15. Clustering analysis of malware behavior using Self Organizing Map

    DEFF Research Database (Denmark)

    Pirscoveanu, Radu-Stefan; Stevanovic, Matija; Pedersen, Jens Myrup

    2016-01-01

    For the time being, malware behavioral classification is performed by means of Anti-Virus (AV) generated labels. The paper investigates the inconsistencies associated with current practices by evaluating the identified differences between current vendors. In this paper we rely on Self Organizing...... Map, an unsupervised machine learning algorithm, for generating clusters that capture the similarities between malware behavior. A data set of approximately 270,000 samples was used to generate the behavioral profile of malicious types in order to compare the outcome of the proposed clustering...... approach with the labels collected from 57 Antivirus vendors using VirusTotal. Upon evaluating the results, the paper concludes on shortcomings of relying on AV vendors for labeling malware samples. In order to solve the problem, a cluster-based classification is proposed, which should provide more...

  16. Dicyanovinyl sexithiophenes: self-organization and photovoltaic properties

    Energy Technology Data Exchange (ETDEWEB)

    Levichkova, Marieta; Wynands, David; Levin, Alexandr; Leo, Karl; Riede, Moritz [Institut fuer Angewandte Photophysik, TU Dresden (Germany); Walzer, Karsten; Hildebrandt, Dirk [Heliatek GmbH, Dresden (Germany); Baeuerle, Peter [Institut fuer Organische Chemie II und Neue Materialien, Universitaet Ulm (Germany); Rentenberger, Rosina [Institut fuer Physik, TU Ilmenau (Germany)

    2010-07-01

    Recently, vacuum deposited films consisting of conjugated dicyanovinyl-capped (DCV) oligothiophenes have shown significant potential as photoactive layers in small molecule solar cells. Here, we study the structural and optical properties of films of two DCV-derivatives both comprising six thiophene rings (DCV6Ts) but having different side groups. For both derivatives, neat DCV6T and mixed DCV6T:C{sub 60} films are compared using UV-VIS absorption and photoluminescence spectroscopy, X-ray diffraction (XRD), and atomic force microscopy. It is shown that the modification of the molecular structure results in a structured and red shifted absorption band, which indicates better molecular arrangement in the solid state. The improved self-organization at room temperature deposition is confirmed by XRD. Furthermore, the nanomorphology of the mixed DCV6T:C{sub 60} films is optimized using substrate heating. Bulk heterojunction solar cells with power conversion efficiencies exceeding 4% are presented.

  17. Characterization of Suicidal Behaviour with Self-Organizing Maps

    Directory of Open Access Journals (Sweden)

    José M. Leiva-Murillo

    2013-01-01

    Full Text Available The study of the variables involved in suicidal behavior is important from a social, medical, and economical point of view. Given the high number of potential variables of interest, a large population of subjects must be analysed in order to get conclusive results. In this paper, we describe a method based on self-organizing maps (SOMs for finding the most relevant variables even when their relation to suicidal behavior is strongly nonlinear. We have applied the method to a cohort with more than 8,000 subjects and 600 variables and discovered four groups of variables involved in suicidal behavior. According to the results, there are four main groups of risk factors that characterize the population of suicide attempters: mental disorders, alcoholism, impulsivity, and childhood abuse. The identification of specific subpopulations of suicide attempters is consistent with current medical knowledge and may provide a new avenue of research to improve the management of suicidal cases.

  18. Autonomous Data Collection Using a Self-Organizing Map.

    Science.gov (United States)

    Faigl, Jan; Hollinger, Geoffrey A

    2018-05-01

    The self-organizing map (SOM) is an unsupervised learning technique providing a transformation of a high-dimensional input space into a lower dimensional output space. In this paper, we utilize the SOM for the traveling salesman problem (TSP) to develop a solution to autonomous data collection. Autonomous data collection requires gathering data from predeployed sensors by moving within a limited communication radius. We propose a new growing SOM that adapts the number of neurons during learning, which also allows our approach to apply in cases where some sensors can be ignored due to a lower priority. Based on a comparison with available combinatorial heuristic algorithms for relevant variants of the TSP, the proposed approach demonstrates improved results, while also being less computationally demanding. Moreover, the proposed learning procedure can be extended to cases where particular sensors have varying communication radii, and it can also be extended to multivehicle planning.

  19. Modeling financial markets by self-organized criticality

    Science.gov (United States)

    Biondo, Alessio Emanuele; Pluchino, Alessandro; Rapisarda, Andrea

    2015-10-01

    We present a financial market model, characterized by self-organized criticality, that is able to generate endogenously a realistic price dynamics and to reproduce well-known stylized facts. We consider a community of heterogeneous traders, composed by chartists and fundamentalists, and focus on the role of informative pressure on market participants, showing how the spreading of information, based on a realistic imitative behavior, drives contagion and causes market fragility. In this model imitation is not intended as a change in the agent's group of origin, but is referred only to the price formation process. We introduce in the community also a variable number of random traders in order to study their possible beneficial role in stabilizing the market, as found in other studies. Finally, we also suggest some counterintuitive policy strategies able to dampen fluctuations by means of a partial reduction of information.

  20. Self-Organizing Maps for Fingerprint Image Quality Assessment

    DEFF Research Database (Denmark)

    Olsen, Martin Aastrup; Tabassi, Elham; Makarov, Anton

    2013-01-01

    Fingerprint quality assessment is a crucial task which needs to be conducted accurately in various phases in the biometric enrolment and recognition processes. Neglecting quality measurement will adversely impact accuracy and efficiency of biometric recognition systems (e.g. verification and iden......Fingerprint quality assessment is a crucial task which needs to be conducted accurately in various phases in the biometric enrolment and recognition processes. Neglecting quality measurement will adversely impact accuracy and efficiency of biometric recognition systems (e.g. verification...... machine learning techniques. We train a self-organizing map (SOM) to cluster blocks of fingerprint images based on their spatial information content. The output of the SOM is a high-level representation of the finger image, which forms the input to a Random Forest trained to learn the relationship between...

  1. Self-organized architectures from assorted DNA-framed nanoparticles

    Science.gov (United States)

    Liu, Wenyan; Halverson, Jonathan; Tian, Ye; Tkachenko, Alexei V.; Gang, Oleg

    2016-09-01

    The science of self-assembly has undergone a radical shift from asking questions about why individual components self-organize into ordered structures, to manipulating the resultant order. However, the quest for far-reaching nanomanufacturing requires addressing an even more challenging question: how to form nanoparticle (NP) structures with designed architectures without explicitly prescribing particle positions. Here we report an assembly concept in which building instructions are embedded into NPs via DNA frames. The integration of NPs and DNA origami frames enables the fabrication of NPs with designed anisotropic and selective interactions. Using a pre-defined set of different DNA-framed NPs, we show it is possible to design diverse planar architectures, which include periodic structures and shaped meso-objects that spontaneously emerge on mixing of the different topological types of NP. Even objects of non-trivial shapes, such as a nanoscale model of Leonardo da Vinci's Vitruvian Man, can be self-assembled successfully.

  2. Self-organization of progress across the century of physics

    Science.gov (United States)

    Perc, Matjaž

    2013-04-01

    We make use of information provided in the titles and abstracts of over half a million publications that were published by the American Physical Society during the past 119 years. By identifying all unique words and phrases and determining their monthly usage patterns, we obtain quantifiable insights into the trends of physics discovery from the end of the 19th century to today. We show that the magnitudes of upward and downward trends yield heavy-tailed distributions, and that their emergence is due to the Matthew effect. This indicates that both the rise and fall of scientific paradigms is driven by robust principles of self-organization. Data also confirm that periods of war decelerate scientific progress, and that the later is very much subject to globalisation.

  3. SORN: a self-organizing recurrent neural network

    Directory of Open Access Journals (Sweden)

    Andreea Lazar

    2009-10-01

    Full Text Available Understanding the dynamics of recurrent neural networks is crucial for explaining how the brain processes information. In the neocortex, a range of different plasticity mechanisms are shaping recurrent networks into effective information processing circuits that learn appropriate representations for time-varying sensory stimuli. However, it has been difficult to mimic these abilities in artificial neural network models. Here we introduce SORN, a self-organizing recurrent network. It combines three distinct forms of local plasticity to learn spatio-temporal patterns in its input while maintaining its dynamics in a healthy regime suitable for learning. The SORN learns to encode information in the form of trajectories through its high-dimensional state space reminiscent of recent biological findings on cortical coding. All three forms of plasticity are shown to be essential for the network's success.

  4. Self-organized global control of carbon emissions

    Science.gov (United States)

    Zhao, Zhenyuan; Fenn, Daniel J.; Hui, Pak Ming; Johnson, Neil F.

    2010-09-01

    There is much disagreement concerning how best to control global carbon emissions. We explore quantitatively how different control schemes affect the collective emission dynamics of a population of emitting entities. We uncover a complex trade-off which arises between average emissions (affecting the global climate), peak pollution levels (affecting citizens’ everyday health), industrial efficiency (affecting the nation’s economy), frequency of institutional intervention (affecting governmental costs), common information (affecting trading behavior) and market volatility (affecting financial stability). Our findings predict that a self-organized free-market approach at the level of a sector, state, country or continent can provide better control than a top-down regulated scheme in terms of market volatility and monthly pollution peaks. The control of volatility also has important implications for any future derivative carbon emissions market.

  5. N-Confused Porphyrin Immobilized on Solid Supports: Synthesis and Metal Ions Sensing Efficacy

    Directory of Open Access Journals (Sweden)

    Sara R. D. Gamelas

    2018-04-01

    Full Text Available In this work, the N-confused porphyrin 5,10,15,20-tetraphenyl-2-aza-21-carbaporphyrin (NCTPP was immobilized on neutral or cationic supports based on silica and on Merrifield resin. The new materials were characterized by appropriate techniques (UV-Vis spectroscopy, SEM, and zeta potential analysis. Piezoelectric quartz crystal gold electrodes were coated with the different hybrids and their ability to interact with heavy metals was evaluated. The preliminary results obtained showed that the new materials can be explored for metal cations detection and the modification of the material surface is a key factor in tuning the metal selectivity.

  6. Performance and energy efficiency in wireless self-organized networks

    Energy Technology Data Exchange (ETDEWEB)

    Gao, C.

    2009-07-01

    Self-organized packet radio networks (ad-hoc networks) and wireless sensor networks have got massive attention recently. One of critical problems in such networks is the energy efficiency, because wireless nodes are usually powered by battery. Energy efficiency design can dramatically increase the survivability and stability of wireless ad-hoc/sensor networks. In this thesis the energy efficiency has been considered at different protocol layers for wireless ad-hoc/sensor networks. The energy consumption of wireless nodes is inspected at the physical layer and MAC layer. At the network layer, some current routing protocols are compared and special attention has been paid to reactive routing protocols. A minimum hop analysis is given and according to the analysis result, a modification of AODV routing is proposed. A variation of transmit power can be also applied to clustering algorithm, which is believed to be able to control the scalability of network. Clustering a network can also improve the energy efficiency. We offer a clustering scheme based on the link state measurement and variation of transmit power of intra-cluster and inter-cluster transmission. Simulation shows that it can achieve both targets. In association with the clustering algorithm, a global synchronization scheme is proposed to increase the efficiency of clustering algorithm. The research attention has been also paid to self-organization for multi-hop cellular networks. A 2-hop 2-slot uplink proposal to infrastructure-based cellular networks. The proposed solution can significantly increase the throughput of uplink communication and reduce the energy consumption of wireless terminals. (orig.)

  7. Traffic instabilities in self-organized pedestrian crowds.

    Directory of Open Access Journals (Sweden)

    Mehdi Moussaïd

    Full Text Available In human crowds as well as in many animal societies, local interactions among individuals often give rise to self-organized collective organizations that offer functional benefits to the group. For instance, flows of pedestrians moving in opposite directions spontaneously segregate into lanes of uniform walking directions. This phenomenon is often referred to as a smart collective pattern, as it increases the traffic efficiency with no need of external control. However, the functional benefits of this emergent organization have never been experimentally measured, and the underlying behavioral mechanisms are poorly understood. In this work, we have studied this phenomenon under controlled laboratory conditions. We found that the traffic segregation exhibits structural instabilities characterized by the alternation of organized and disorganized states, where the lifetime of well-organized clusters of pedestrians follow a stretched exponential relaxation process. Further analysis show that the inter-pedestrian variability of comfortable walking speeds is a key variable at the origin of the observed traffic perturbations. We show that the collective benefit of the emerging pattern is maximized when all pedestrians walk at the average speed of the group. In practice, however, local interactions between slow- and fast-walking pedestrians trigger global breakdowns of organization, which reduce the collective and the individual payoff provided by the traffic segregation. This work is a step ahead toward the understanding of traffic self-organization in crowds, which turns out to be modulated by complex behavioral mechanisms that do not always maximize the group's benefits. The quantitative understanding of crowd behaviors opens the way for designing bottom-up management strategies bound to promote the emergence of efficient collective behaviors in crowds.

  8. Self-organization in a diversity induced thermodynamics.

    Science.gov (United States)

    Scirè, Alessandro; Annovazzi-Lodi, Valerio

    2017-01-01

    In this work we show how global self-organized patterns can come out of a disordered ensemble of point oscillators, as a result of a deterministic, and not of a random, cooperative process. The resulting system dynamics has many characteristics of classical thermodynamics. To this end, a modified Kuramoto model is introduced, by including Euclidean degrees of freedom and particle polarity. The standard deviation of the frequency distribution is the disorder parameter, diversity, acting as temperature, which is both a source of motion and of disorder. For zero and low diversity, robust static phase-synchronized patterns (crystals) appear, and the problem reverts to a generic dissipative many-body problem. From small to moderate diversity crystals display vibrations followed by structure disintegration in a competition of smaller dynamic patterns, internally synchronized, each of which is capable to manage its internal diversity. In this process a huge variety of self-organized dynamic shapes is formed. Such patterns can be seen again as (more complex) oscillators, where the same description can be applied in turn, renormalizing the problem to a bigger scale, opening the possibility of pattern evolution. The interaction functions are kept local because our idea is to build a system able to produce global patterns when its constituents only interact at the bond scale. By further increasing the oscillator diversity, the dynamics becomes erratic, dynamic patterns show short lifetime, and finally disappear for high diversity. Results are neither qualitatively dependent on the specific choice of the interaction functions nor on the shape of the probability function assumed for the frequencies. The system shows a phase transition and a critical behaviour for a specific value of diversity.

  9. Self-Organization and the Bypass: Re-Imagining Institutions for More Sustainable Development in Agriculture and Food

    Directory of Open Access Journals (Sweden)

    Stephen Sherwood

    2016-12-01

    Full Text Available In exploring the social dynamics of agrofood movements in Ecuador as examples of self-organization (i.e., locally distributed and resolved development, this article departs from a preoccupation with innovation by means of design and the use of scaling as a metaphor for describing research contributions in agriculture and food. The case material highlights that much development is contingent, unpredictable, and unmanageable as well as unbound to fixed spaces or places. In their study of people’s daily practice, the authors do not find clear boundaries between dichotomies of internal–external, lay–expert, traditional–modern, or local–global organization, but heterogeneous blends of each. For the purposes of sustainable development, this highlights the need for attention to be paid to relationships (social, material, and biological, adaptation (the capacity to innovate, and responsibility (adherence to norms of sustainability. Far from romanticizing self-organization, the authors acknowledge that people and their institutions share varying degrees of complicity for the goods as well as the bads of their economic activity, such as mass soil degradation, agrobiodiversity loss, and poisoning by pesticides. Nevertheless, even under highly difficult conditions, certain actors effectively bypass the limitations of formal institutions in forging a socio-technical course of action (i.e., policy for relatively healthy living and being. As such, the authors have come to appreciate self-organization as a neglected, if paradoxical, resource for policy transition towards more sustainable agriculture and food.

  10. Synthesis, characterization, and nonlinear optical properties of graphene oxide functionalized with tetra-amino porphyrin

    International Nuclear Information System (INIS)

    Yamuna, R.; Ramakrishnan, S.; Dhara, Keerthy; Devi, R.; Kothurkar, Nikhil K.; Kirubha, E.; Palanisamy, P. K.

    2013-01-01

    The synthesis of a porphyrin–graphene oxide hybrid (GO–TAP) was carried out by covalently functionalizing graphene oxide (GO) with 5,10,15,20 mesotetra (4-aminophenyl) porphyrin (TAP) through an amide linkage. The GO–TAP hybrid has been characterized by Fourier transform infrared spectroscopy, X-ray photoelectron spectroscopy, and UV–visible spectroscopy. The peak intensity of the Soret band of the material was suppressed compared to neat TAP. This indicates a strong interaction between the electronic energy level of TAP and GO in the GO–TAP hybrid. The functionalization of GO with TAP significantly improved its solubility and dispersion stability in organic solvents. Scanning electron micrographs reveal that the hybrid was found to be similar to the unmodified GO but slightly more wrinkled. Transmission electron micrographs also demonstrate that GO sheet in the hybrid is more wrinkled with some dark spot due to functionalization. Atomic force microscopy results also reveal that the TAP functionalization increases the thickness of GO sheet to 2.0–3.0 nm from 1.2 to 1.8 nm. We observed improved nonlinear optical and optical limiting properties for the hybrid compared to both graphene oxide and porphyrin. GO–TAP shows fluorescence quenching compared with porphyrin, indicating excellent electron and/or energy transfer to GO from TAP. Thermogravimetric analysis confirms that the GO–TAP hybrid has outstanding thermal stability.

  11. The study of cellulosic fabrics impregnated with porphyrin compounds for use as photo-bactericidal polymers

    Energy Technology Data Exchange (ETDEWEB)

    Rahimi, Rahmatollah, E-mail: rahimi_rah@iust.ac.ir [Bioinorganic Chemistry Laboratory, Department of Chemistry, Iran University of Science and Technology, Tehran 16846-13114 (Iran, Islamic Republic of); Fayyaz, Fatemeh [Bioinorganic Chemistry Laboratory, Department of Chemistry, Iran University of Science and Technology, Tehran 16846-13114 (Iran, Islamic Republic of); Rassa, Mehdi [Department of Biology, Faculty of Science, University of Guilan, Rasht (Iran, Islamic Republic of)

    2016-02-01

    In the present work, we report on the preparation of cellulosic fabrics bearing two types of photo-sensitizers in order to prepare efficient polymeric materials for antimicrobial applications. The obtained porphyrin-grafted cellulosic fabrics were characterized by attenuated total reflectance Fourier transform infrared (ATR-FTIR) spectroscopy, diffuse reflectance UV–Vis (DRUV) spectroscopy, thermo-gravimetric analysis (TG) and scanning electron microscopy (SEM). Antimicrobial activity of the prepared porphyrin-cellulose was tested under visible light irradiation against Staphylococcus aureus, Pseudomunas aeroginosa and Escherichia coli. In addition, the effect of two parameters on photo-bactericidal activity of treated fibers was studied: illumination time and concentration of photosensitizers (PS). - Highlights: • Cellulosic fabrics were impregnated with various concentrations of porphyrins (TAPP and its zinc ion complex). • The products were characterized by ATR-FTIR, DRUV, SEM and TG. • The photo-antibacterial activity of products was determined against S. aureus, P. aeroginosa and E. coli. • The effect of two parameters were studied on photoinactivation of treated fibers: illumination time and concentration of PS.

  12. Porphyrin Interactions with Wild Type and Mutant Mouse Ferrochelatase

    Energy Technology Data Exchange (ETDEWEB)

    Ferreira, Gloria C.; Franco, Ricardo; Lu, Yi; Ma, Jian-Guo; Shelnutt, John A.

    1999-05-19

    Ferrochelatase (EC 4.99.1.1), the terminal enzyme of the heme biosynthetic pathway, catalyzes Fe2+ chelation into protoporphyrin IX. Resonance Raman and W-visible absorbance spectroscopes of wild type and engineered variants of murine ferrochelatase were used to examine the proposed structural mechanism for iron insertion into protoporphyrin by ferrochelatase. The recombinant variants (i.e., H207N and E287Q) are enzymes in which the conserved amino acids histidine-207 and glutamate-287 of murine ferrochelatase were substituted with asparagine and glutamine, respectively. Both of these residues are at the active site of the enzyme as deduced from the Bacillus subtilis ferrochelatase three-dimensional structure. Addition of free base or metalated porphyrins to wild type ferrochelatase and H207N variant yields a quasi 1:1 complex, possibly a monomeric protein-bound species. In contrast, the addition of porphyrin (either free base or metalated) to E287Q is sub-stoichiometric, as this variant retains bound porphyrin in the active site during isolation and purification. The specificity of porphyrin binding is confirmed by the narrowing of the structure-sensitive resonance Raman lines and the vinyl vibrational mode. Resonance Raman spectra of free base and metalated porphyrins bound to the wild type ferrochelatase indicate a nonplanar distortion of the porphyrin macrocycle, although the magnitude of the distortion cannot be determined without first defining the specific type of deformation. Significantly, the extent of the nonplanar distortion varies in the case of H207N- and E287Q-bound porphyrins. In fact, resonance Raman spectral decomposition indicates a homogeneous ruffled distortion for the nickel protoporphyrin bound to the wild type ferrochelatase, whereas both a planar and ruffled conformations are present for the H207N-bound porphyrin. Perhaps more revealing is the unusual resonance , 3 Raman spectrum of the endogenous E287Q-bound porphyrin, which has

  13. Communication: Charge-transfer rate constants in zinc-porphyrin-porphyrin-derived dyads: A Fermi golden rule first-principles-based study

    International Nuclear Information System (INIS)

    Manna, Arun K.; Dunietz, Barry D.

    2014-01-01

    We investigate photoinduced charge transfer (CT) processes within dyads consisting of porphyrin derivatives in which one ring ligates a Zn metal center and where the rings vary by their degree of conjugation. Using a first-principles approach, we show that molecular-scale means can tune CT rates through stabilization affected by the polar environment. Such means of CT tuning are important for achieving high efficiency optoelectronic applications using organic semiconducting materials. Our fully quantum mechanical scheme is necessary for reliably modeling the CT process across different regimes, in contrast to the pervading semi-classical Marcus picture that grossly underestimates transfer in the far-inverted regime

  14. Self organization and low frequency Raman scattering in quartz glasses irradiated by fast neutrons

    International Nuclear Information System (INIS)

    Davranov, O. D.; Subhankulov, I.

    2002-01-01

    In all investigated glasses materials in low frequency region of the IR absorption and Raman scattering spectra intensive and sufficiently broad band with maximum within ∼10-100 cm -1 is observed. The availability of such band is a typical trait of low frequency spectra of amorphous materials and spectroscopic characteristics of this observed low frequency peak in glasses are similar to the spectra of liquids and liquid crystals. In this work the influence of fast neutrons (from 2.5·10 15 to 2.2·10 20 cm -2 ) on location of low frequency peak in quartz glass was investigated with accidental impurities (Ca, Al, Ba, Sb, Pb, Mn, B, Na, Zn), in which summary maintenance of impurities was (10 13 -10 -1 ) mass %). Spectral from of low frequency Raman scattering peak is identical in all glasses independently from their chemical composition. It is discovered that the frequency and amplitude of boson peak increase with increasing of irradiation dose. Maximum of peak is displaced from 54 to 72 cm -1 depending on irradiation dose, but amplitude is increased up to 1.5 times. The increasing of glass density and velocity of acoustic waves propagation are observed. Depending on E-centre ( 28 Si 3+ ) concentration under irradiation dose at first a gradual growth, and then saturation of these centres is observed. The increasing of concentration of centres correlates with the growth of intensity of narrow Raman line 606 cm -1 , connected to oxygen atoms' vibrations on the clusters surface. The irradiation by fast neutron lead to the changing degree of self organization of phase correlation in glasses. It leads to the rising of internal field of phase structure, and consequently, to the changing of wave vector of phase structure, which is displayed in the shift of frequency of boson peak. The changing of self organization degree influences the macroscopic parameters of medium and it is displayed in the changing of glass density and velocity of acoustic waves propagation. The

  15. Self-organized criticality as a paradigm for transport processes in magnetically confined plasma

    International Nuclear Information System (INIS)

    Karreras, B.A.; N'yuman, D.; Linch, V.E.

    1996-01-01

    Many models of natural events prove the basic hypotheses of self-organized critically. The concept on self-organized criticality combines self similarity on a spatial and time scale, characteristic of many such events. Application of the self-organized criticality concept to plasma dynamics close to the stability limit opens new possibilities for comprehension of such events as the Bom scaling, profile selfconsistency, wide band fluctuation spectra with universal characteristics and small time scales. Refs. 51, figs. 17

  16. Evolving Self-Organized Behavior for Homogeneous and Heterogeneous UAV or UCAV Swarms

    National Research Council Canada - National Science Library

    Price, Ian C

    2006-01-01

    This investigation uses a self-organization (SO) approach to enable cooperative search and destruction of retaliating targets with swarms of homogeneous and heterogeneous unmanned aerial vehicles (UAVs...

  17. Visible light photocatalytic disinfection of E. coli with TiO_2–graphene nanocomposite sensitized with tetrakis(4-carboxyphenyl)porphyrin

    International Nuclear Information System (INIS)

    Rahimi, Rahmatollah; Zargari, Solmaz; Yousefi, Azam; Yaghoubi Berijani, Marzieh; Ghaffarinejad, Ali; Morsali, Ali

    2015-01-01

    Graphical abstract: TiO_2–graphene nanocomposites with different content of graphene were synthesized via a facile one-step solvothermal method. Photoelectrochemical responses of prepared photocatalysts were measured to determine the optimum content of graphene in TG nanocomposites. The results show that the TG nanocomposite with 3% of graphene has the highest photoactivity. This compound was sensitized with tetrakis(4-carboxyphenyl)porphyrin (TGP). The prepared photocatalysts were used for photocatalytic disinfection of E. coli. The results showed that the photocatalytic disinfection of the TG nanocomposite was increased after sensitization with porphyrin. The enhanced photocatalytic performance could be attributed to the synergistic effect between TiO_2, graphene and porphyrin sensitizer in the TGP photocatalyst. - Highlights: • TiO_2–graphene nanocomposites (TG) were synthesized with different content of graphene. • The TG nanocomposite with different content of graphene was sensitized with porphyrin (TGP). • The disinfection of E. coli using TGP was investigated in the visible light. • Porphyrin sensitizer increases effectively the photocatalytic disinfection efficiency of TGP. - Abstract: The present research deals with the development of a new heterogeneous photocatalysis system for disinfection of bacteria from wastewater by using TiO_2–graphene (TG) nanocomposite sensitized with tetrakis(4-carboxyphenyl)porphyrin (TCPP). The disinfection of wastewater using this photocatalyst is not reported in the literature yet. All the synthesized materials were thoroughly characterized by Raman, XRD, DRS, BET, and SEM analysis. The optimum content of graphene in the TiO_2–graphene nanocomposite was determined by photocurrent responses of prepared photocatalysts. Subsequently, the photocurrent measurements demonstrate that the TiO_2–graphene nanocomposite with 3% graphene content has higher photoactivity. Furthermore, sensitization of the TiO_2

  18. Synthesis, spectroscopy and photosensitizing properties of hydroxynitrophenyl porphyrins

    Energy Technology Data Exchange (ETDEWEB)

    Maestrin, Ana Paula J.; Tedesco, Antonio Claudio; Neri, Claudio R.; Gandini, Maria Elisa F.; Serra, Osvaldo A.; Iamamoto, Yassuko [Sao Paulo Univ., Ribeirao Preto, SP (Brazil). Faculdade de Filosofia, Ciencias e Letras. Inst. de Quimica]. E-mail: osaserra@usp.br

    2004-10-01

    The hydroxynitrophenyl porphyrins, 5,10,15,20-tetrakis(2-hydroxy-5-nitrophenyl)porphyrin and 5-mono(carboxyphenyl)-10,15,20-tris(2-hydroxy-5-nitrophenyl)porphyrin described in this work were prepared through Adler's method. These compounds were characterized by {sup 1}H NMR and light absorption and emission spectroscopy in the visible region. In order to demonstrate the involvement of {sup 1}O{sub 2} production, the uric (UA) acid test was carried out, which considers the decrease in the absorbance of UA at 293 nm following laser light irradiation of a solution containing UA and a photosensitizer. The results obtained demonstrate that these hydroxynitrophenyl porphyrins can be considered as promising photosensitizers in PDT. (author)

  19. Porphyrin Diacid-Polyelectrolyte Assemblies: Effective Photocatalysts in Solution

    Directory of Open Access Journals (Sweden)

    Sabine Frühbeißer

    2016-05-01

    Full Text Available Developing effective and versatile photocatalytic systems is of great potential in solar energy conversion. Here we investigate the formation of supramolecular catalysts by electrostatic self-assembly in aqueous solution: Combining positively charged porphyrins with negatively charged polyelectrolytes leads to nanoscale assemblies where, next to electrostatic interactions, π–π interactions also play an important role. Porphyrin diacid-polyelectrolyte assemblies exhibit a substantially enhanced catalytic activity for the light-driven oxidation of iodide. Aggregates with the hexavalent cationic porphyrin diacids show up to 22 times higher catalytic activity than the corresponding aggregates under neutral conditions. The catalytic activity can be increased by increasing the valency of the porphyrin and by choice of the loading ratio. The structural investigation of the supramolecular catalysts took place via atomic force microscopy and small angle neutron scattering. Hence, a new facile concept for the design of efficient and tunable self-assembled photocatalysts is presented.

  20. Thin porphyrin composite membranes with enhanced organic solvent transport

    KAUST Repository

    Phuoc, Duong; Anjum, Dalaver H.; Peinemann, Klaus-Viktor; Nunes, Suzana Pereira

    2018-01-01

    Extending the stability of polymeric membranes in organic solvents is important for applications in chemical and pharmaceutical industry. Thin-film composite membranes with enhanced solvent permeance are proposed, using porphyrin as a building block

  1. Challenging Density Functional Theory Calculations with Hemes and Porphyrins

    Science.gov (United States)

    de Visser, Sam P.; Stillman, Martin J.

    2016-01-01

    In this paper we review recent advances in computational chemistry and specifically focus on the chemical description of heme proteins and synthetic porphyrins that act as both mimics of natural processes and technological uses. These are challenging biochemical systems involved in electron transfer as well as biocatalysis processes. In recent years computational tools have improved considerably and now can reproduce experimental spectroscopic and reactivity studies within a reasonable error margin (several kcal·mol−1). This paper gives recent examples from our groups, where we investigated heme and synthetic metal-porphyrin systems. The four case studies highlight how computational modelling can correctly reproduce experimental product distributions, predicted reactivity trends and guide interpretation of electronic structures of complex systems. The case studies focus on the calculations of a variety of spectroscopic features of porphyrins and show how computational modelling gives important insight that explains the experimental spectra and can lead to the design of porphyrins with tuned properties. PMID:27070578

  2. Challenging Density Functional Theory Calculations with Hemes and Porphyrins

    Directory of Open Access Journals (Sweden)

    Sam P. de Visser

    2016-04-01

    Full Text Available In this paper we review recent advances in computational chemistry and specifically focus on the chemical description of heme proteins and synthetic porphyrins that act as both mimics of natural processes and technological uses. These are challenging biochemical systems involved in electron transfer as well as biocatalysis processes. In recent years computational tools have improved considerably and now can reproduce experimental spectroscopic and reactivity studies within a reasonable error margin (several kcal·mol−1. This paper gives recent examples from our groups, where we investigated heme and synthetic metal-porphyrin systems. The four case studies highlight how computational modelling can correctly reproduce experimental product distributions, predicted reactivity trends and guide interpretation of electronic structures of complex systems. The case studies focus on the calculations of a variety of spectroscopic features of porphyrins and show how computational modelling gives important insight that explains the experimental spectra and can lead to the design of porphyrins with tuned properties.

  3. PORPHYRIN METABOLISM AND LIVER FUNCTION IN THE BANTU

    African Journals Online (AJOL)

    method for the detection of urinary coproporphyrin, Mentz5 calculated that ... defect in porphyrin metabolism which is commonly found in the Bantu could be ..... wood,61 traces of uroporphyrin may be excreted in normal urine. As much as 5 ...

  4. Mineralogy of halloysites and their interaction with porphyrine

    Czech Academy of Sciences Publication Activity Database

    Vašutová, V.; Bezdička, Petr; Lang, Kamil; Hradil, David

    2013-01-01

    Roč. 57, č. 3 (2013), s. 243-250 ISSN 0862-5468 Institutional support: RVO:61388980 Keywords : organoclays * mineralogy * porphyrine * CEC Subject RIV: CA - Inorganic Chemistry Impact factor: 0.434, year: 2013

  5. Self-organization of spatio-temporal earthquake clusters

    Directory of Open Access Journals (Sweden)

    S. Hainzl

    2000-01-01

    Full Text Available Cellular automaton versions of the Burridge-Knopoff model have been shown to reproduce the power law distribution of event sizes; that is, the Gutenberg-Richter law. However, they have failed to reproduce the occurrence of foreshock and aftershock sequences correlated with large earthquakes. We show that in the case of partial stress recovery due to transient creep occurring subsequently to earthquakes in the crust, such spring-block systems self-organize into a statistically stationary state characterized by a power law distribution of fracture sizes as well as by foreshocks and aftershocks accompanying large events. In particular, the increase of foreshock and the decrease of aftershock activity can be described by, aside from a prefactor, the same Omori law. The exponent of the Omori law depends on the relaxation time and on the spatial scale of transient creep. Further investigations concerning the number of aftershocks, the temporal variation of aftershock magnitudes, and the waiting time distribution support the conclusion that this model, even "more realistic" physics in missed, captures in some ways the origin of the size distribution as well as spatio-temporal clustering of earthquakes.

  6. Self-Organizing Maps on the Cell Broadband Engine Architecture

    International Nuclear Information System (INIS)

    McConnell, Sabine M

    2010-01-01

    We present and evaluate novel parallel implementations of Self-Organizing Maps for the Cell Broadband Engine Architecture. Motivated by the interactive nature of the data-mining process, we evaluate the scalability of the implementations on two clusters using different network characteristics and incarnations (PS3 TM console and PowerXCell 8i) of the architecture. Our implementations use varying combinations of the Power Processing Elements (PPEs) and Synergistic Processing Elements (SPEs) found in the Cell architecture. For a single processor, our implementation scaled well with the number of SPEs regardless of the incarnation. When combining multiple PS3 TM consoles, the synchronization over the slower network resulted in poor speedups and demonstrated that the use of such a low-cost cluster may be severely restricted, even without the use of SPEs. When using multiple SPEs for the PowerXCell 8i cluster, the speedup grew linearly with increasing number of SPEs for a given number of processors, and linear up to a maximum with the number of processors for a given number of SPEs. Our implementation achieved a worst-case efficiency of 67% for the maximum number of processing elements involved in the computation, but consistently higher values for smaller numbers of processing elements with speedups of up to 70.

  7. Impact of network topology on self-organized criticality

    Science.gov (United States)

    Hoffmann, Heiko

    2018-02-01

    The general mechanisms behind self-organized criticality (SOC) are still unknown. Several microscopic and mean-field theory approaches have been suggested, but they do not explain the dependence of the exponents on the underlying network topology of the SOC system. Here, we first report the phenomena that in the Bak-Tang-Wiesenfeld (BTW) model, sites inside an avalanche area largely return to their original state after the passing of an avalanche, forming, effectively, critically arranged clusters of sites. Then, we hypothesize that SOC relies on the formation process of these clusters, and present a model of such formation. For low-dimensional networks, we show theoretically and in simulation that the exponent of the cluster-size distribution is proportional to the ratio of the fractal dimension of the cluster boundary and the dimensionality of the network. For the BTW model, in our simulations, the exponent of the avalanche-area distribution matched approximately our prediction based on this ratio for two-dimensional networks, but deviated for higher dimensions. We hypothesize a transition from cluster formation to the mean-field theory process with increasing dimensionality. This work sheds light onto the mechanisms behind SOC, particularly, the impact of the network topology.

  8. Self-organization of human embryonic stem cells on micropatterns

    Science.gov (United States)

    Deglincerti, Alessia; Etoc, Fred; Guerra, M. Cecilia; Martyn, Iain; Metzger, Jakob; Ruzo, Albert; Simunovic, Mijo; Yoney, Anna; Brivanlou, Ali H.; Siggia, Eric; Warmflash, Aryeh

    2018-01-01

    Fate allocation in the gastrulating embryo is spatially organized as cells differentiate to specialized cell types depending on their positions with respect to the body axes. There is a need for in vitro protocols that allow the study of spatial organization associated with this developmental transition. While embryoid bodies and organoids can exhibit some spatial organization of differentiated cells, these methods do not yield consistent and fully reproducible results. Here, we describe a micropatterning approach where human embryonic stem cells are confined to disk-shaped, sub-millimeter colonies. After 42 hours of BMP4 stimulation, cells form self-organized differentiation patterns in concentric radial domains, which express specific markers associated with the embryonic germ layers, reminiscent of gastrulating embryos. Our protocol takes 3 days; it uses commercial microfabricated slides (CYTOO), human laminin-521 (LN-521) as extra-cellular matrix coating, and either conditioned or chemically-defined medium (mTeSR). Differentiation patterns within individual colonies can be determined by immunofluorescence and analyzed with cellular resolution. Both the size of the micropattern and the type of medium affect the patterning outcome. The protocol is appropriate for personnel with basic stem cell culture training. This protocol describes a robust platform for quantitative analysis of the mechanisms associated with pattern formation at the onset of gastrulation. PMID:27735934

  9. Trading leads to scale-free self-organization

    Science.gov (United States)

    Ebert, M.; Paul, W.

    2012-12-01

    Financial markets display scale-free behavior in many different aspects. The power-law behavior of part of the distribution of individual wealth has been recognized by Pareto as early as the nineteenth century. Heavy-tailed and scale-free behavior of the distribution of returns of different financial assets have been confirmed in a series of works. The existence of a Pareto-like distribution of the wealth of market participants has been connected with the scale-free distribution of trading volumes and price-returns. The origin of the Pareto-like wealth distribution, however, remained obscure. Here we show that in a market where the imbalance of supply and demand determines the direction of prize changes, it is the process of trading itself that spontaneously leads to a self-organization of the market with a Pareto-like wealth distribution for the market participants and at the same time to a scale-free behavior of return fluctuations and trading volume distributions.

  10. Self-organized fluorescent nanosensors for ratiometric Pb2+ detection.

    Science.gov (United States)

    Arduini, Maria; Mancin, Fabrizio; Tecilla, Paolo; Tonellato, Umberto

    2007-07-31

    Silica nanoparticles (60 nm diameter) doped with fluorescent dyes and functionalized on the surface with thiol groups have been proved to be efficient fluorescent chemosensors for Pb2+ ions. The particles can detect a 1 microM metal ion concentration with a good selectivity, suffering only interference from Cu2+ ions. Analyte binding sites are provided by the simple grafting of the thiol groups on the nanoparticles. Once bound to the particles surface, the Pb2+ ions quench the emission of the reporting dyes embedded. Sensor performances can be improved by taking advantage of the ease of production of multishell silica particles. On one hand, signaling units can be concentrated in the external shells, allowing a closer interaction with the surface-bound analyte. On the other, a second dye can be buried in the particle core, far enough from the surface to be unaffected by the Pb2+ ions, thus producing a reference signal. In this way, a ratiometric system is easily prepared by simple self-organization of the particle components.

  11. Self-organization of punishment in structured populations

    Science.gov (United States)

    Perc, Matjaž; Szolnoki, Attila

    2012-04-01

    Cooperation is crucial for the remarkable evolutionary success of the human species. Not surprisingly, some individuals are willing to bear additional costs in order to punish defectors. Current models assume that, once set, the fine and cost of punishment do not change over time. Here we show that relaxing this assumption by allowing players to adapt their sanctioning efforts in dependence on the success of cooperation can explain both the spontaneous emergence of punishment and its ability to deter defectors and those unwilling to punish them with globally negligible investments. By means of phase diagrams and the analysis of emerging spatial patterns, we demonstrate that adaptive punishment promotes public cooperation through the invigoration of spatial reciprocity, the prevention of the emergence of cyclic dominance, or the provision of competitive advantages to those that sanction antisocial behavior. The results presented indicate that the process of self-organization significantly elevates the effectiveness of punishment, and they reveal new mechanisms by means of which this fascinating and widespread social behavior could have evolved.

  12. Mobile Anomaly Detection Based on Improved Self-Organizing Maps

    Directory of Open Access Journals (Sweden)

    Chunyong Yin

    2017-01-01

    Full Text Available Anomaly detection has always been the focus of researchers and especially, the developments of mobile devices raise new challenges of anomaly detection. For example, mobile devices can keep connection with Internet and they are rarely turned off even at night. This means mobile devices can attack nodes or be attacked at night without being perceived by users and they have different characteristics from Internet behaviors. The introduction of data mining has made leaps forward in this field. Self-organizing maps, one of famous clustering algorithms, are affected by initial weight vectors and the clustering result is unstable. The optimal method of selecting initial clustering centers is transplanted from K-means to SOM. To evaluate the performance of improved SOM, we utilize diverse datasets and KDD Cup99 dataset to compare it with traditional one. The experimental results show that improved SOM can get higher accuracy rate for universal datasets. As for KDD Cup99 dataset, it achieves higher recall rate and precision rate.

  13. Business Client Segmentation in Banking Using Self-Organizing Maps

    Directory of Open Access Journals (Sweden)

    Bach Mirjana Pejić

    2014-11-01

    Full Text Available Segmentation in banking for the business client market is traditionally based on size measured in terms of income and the number of employees, and on statistical clustering methods (e.g. hierarchical clustering, k-means. The goal of the paper is to demonstrate that self-organizing maps (SOM effectively extend the pool of possible criteria for segmentation of the business client market with more relevant criteria, including behavioral, demographic, personal, operational, situational, and cross-selling products. In order to attain the goal of the paper, the dataset on business clients of several banks in Croatia, which, besides size, incorporates a number of different criteria, is analyzed using the SOM-Ward clustering algorithm of Viscovery SOMine software. The SOM-Ward algorithm extracted three segments that differ with respect to the attributes of foreign trade operations (import/export, annual income, origin of capital, important bank selection criteria, views on the loan selection and the industry. The analyzed segments can be used by banks for deciding on the direction of further marketing activities.

  14. Self-Organized Criticality in an Anisotropic Earthquake Model

    Science.gov (United States)

    Li, Bin-Quan; Wang, Sheng-Jun

    2018-03-01

    We have made an extensive numerical study of a modified model proposed by Olami, Feder, and Christensen to describe earthquake behavior. Two situations were considered in this paper. One situation is that the energy of the unstable site is redistributed to its nearest neighbors randomly not averagely and keeps itself to zero. The other situation is that the energy of the unstable site is redistributed to its nearest neighbors randomly and keeps some energy for itself instead of reset to zero. Different boundary conditions were considered as well. By analyzing the distribution of earthquake sizes, we found that self-organized criticality can be excited only in the conservative case or the approximate conservative case in the above situations. Some evidence indicated that the critical exponent of both above situations and the original OFC model tend to the same result in the conservative case. The only difference is that the avalanche size in the original model is bigger. This result may be closer to the real world, after all, every crust plate size is different. Supported by National Natural Science Foundation of China under Grant Nos. 11675096 and 11305098, the Fundamental Research Funds for the Central Universities under Grant No. GK201702001, FPALAB-SNNU under Grant No. 16QNGG007, and Interdisciplinary Incubation Project of SNU under Grant No. 5

  15. Self-organization of social hierarchy on interaction networks

    International Nuclear Information System (INIS)

    Fujie, Ryo; Odagaki, Takashi

    2011-01-01

    In order to examine the effects of interaction network structures on the self-organization of social hierarchy, we introduce the agent-based model: each individual as on a node of a network has its own power and its internal state changes by fighting with its neighbors and relaxation. We adopt three different networks: regular lattice, small-world network and scale-free network. For the regular lattice, we find the emergence of classes distinguished by the internal state. The transition points where each class emerges are determined analytically, and we show that each class is characterized by the local ranking relative to their neighbors. We also find that the antiferromagnetic-like configuration emerges just above the critical point. For the heterogeneous networks, individuals become winners (or losers) in descending order of the number of their links. By using mean-field analysis, we reveal that the transition point is determined by the maximum degree and the degree distribution in its neighbors

  16. LSOT: A Lightweight Self-Organized Trust Model in VANETs

    Directory of Open Access Journals (Sweden)

    Zhiquan Liu

    2016-01-01

    Full Text Available With the advances in automobile industry and wireless communication technology, Vehicular Ad hoc Networks (VANETs have attracted the attention of a large number of researchers. Trust management plays an important role in VANETs. However, it is still at the preliminary stage and the existing trust models cannot entirely conform to the characteristics of VANETs. This work proposes a novel Lightweight Self-Organized Trust (LSOT model which contains trust certificate-based and recommendation-based trust evaluations. Both the supernodes and trusted third parties are not needed in our model. In addition, we comprehensively consider three factor weights to ease the collusion attack in trust certificate-based trust evaluation, and we utilize the testing interaction method to build and maintain the trust network and propose a maximum local trust (MLT algorithm to identify trustworthy recommenders in recommendation-based trust evaluation. Furthermore, a fully distributed VANET scenario is deployed based on the famous Advogato dataset and a series of simulations and analysis are conducted. The results illustrate that our LSOT model significantly outperforms the excellent experience-based trust (EBT and Lightweight Cross-domain Trust (LCT models in terms of evaluation performance and robustness against the collusion attack.

  17. Self-organization of muscle cell structure and function.

    Directory of Open Access Journals (Sweden)

    Anna Grosberg

    2011-02-01

    Full Text Available The organization of muscle is the product of functional adaptation over several length scales spanning from the sarcomere to the muscle bundle. One possible strategy for solving this multiscale coupling problem is to physically constrain the muscle cells in microenvironments that potentiate the organization of their intracellular space. We hypothesized that boundary conditions in the extracellular space potentiate the organization of cytoskeletal scaffolds for directed sarcomeregenesis. We developed a quantitative model of how the cytoskeleton of neonatal rat ventricular myocytes organizes with respect to geometric cues in the extracellular matrix. Numerical results and in vitro assays to control myocyte shape indicated that distinct cytoskeletal architectures arise from two temporally-ordered, organizational processes: the interaction between actin fibers, premyofibrils and focal adhesions, as well as cooperative alignment and parallel bundling of nascent myofibrils. Our results suggest that a hierarchy of mechanisms regulate the self-organization of the contractile cytoskeleton and that a positive feedback loop is responsible for initiating the break in symmetry, potentiated by extracellular boundary conditions, is required to polarize the contractile cytoskeleton.

  18. Self-organization of muscle cell structure and function.

    Science.gov (United States)

    Grosberg, Anna; Kuo, Po-Ling; Guo, Chin-Lin; Geisse, Nicholas A; Bray, Mark-Anthony; Adams, William J; Sheehy, Sean P; Parker, Kevin Kit

    2011-02-01

    The organization of muscle is the product of functional adaptation over several length scales spanning from the sarcomere to the muscle bundle. One possible strategy for solving this multiscale coupling problem is to physically constrain the muscle cells in microenvironments that potentiate the organization of their intracellular space. We hypothesized that boundary conditions in the extracellular space potentiate the organization of cytoskeletal scaffolds for directed sarcomeregenesis. We developed a quantitative model of how the cytoskeleton of neonatal rat ventricular myocytes organizes with respect to geometric cues in the extracellular matrix. Numerical results and in vitro assays to control myocyte shape indicated that distinct cytoskeletal architectures arise from two temporally-ordered, organizational processes: the interaction between actin fibers, premyofibrils and focal adhesions, as well as cooperative alignment and parallel bundling of nascent myofibrils. Our results suggest that a hierarchy of mechanisms regulate the self-organization of the contractile cytoskeleton and that a positive feedback loop is responsible for initiating the break in symmetry, potentiated by extracellular boundary conditions, is required to polarize the contractile cytoskeleton.

  19. Self-organized criticality in developing neuronal networks.

    Directory of Open Access Journals (Sweden)

    Christian Tetzlaff

    Full Text Available Recently evidence has accumulated that many neural networks exhibit self-organized criticality. In this state, activity is similar across temporal scales and this is beneficial with respect to information flow. If subcritical, activity can die out, if supercritical epileptiform patterns may occur. Little is known about how developing networks will reach and stabilize criticality. Here we monitor the development between 13 and 95 days in vitro (DIV of cortical cell cultures (n = 20 and find four different phases, related to their morphological maturation: An initial low-activity state (≈19 DIV is followed by a supercritical (≈20 DIV and then a subcritical one (≈36 DIV until the network finally reaches stable criticality (≈58 DIV. Using network modeling and mathematical analysis we describe the dynamics of the emergent connectivity in such developing systems. Based on physiological observations, the synaptic development in the model is determined by the drive of the neurons to adjust their connectivity for reaching on average firing rate homeostasis. We predict a specific time course for the maturation of inhibition, with strong onset and delayed pruning, and that total synaptic connectivity should be strongly linked to the relative levels of excitation and inhibition. These results demonstrate that the interplay between activity and connectivity guides developing networks into criticality suggesting that this may be a generic and stable state of many networks in vivo and in vitro.

  20. Self-organizing maps based on limit cycle attractors.

    Science.gov (United States)

    Huang, Di-Wei; Gentili, Rodolphe J; Reggia, James A

    2015-03-01

    Recent efforts to develop large-scale brain and neurocognitive architectures have paid relatively little attention to the use of self-organizing maps (SOMs). Part of the reason for this is that most conventional SOMs use a static encoding representation: each input pattern or sequence is effectively represented as a fixed point activation pattern in the map layer, something that is inconsistent with the rhythmic oscillatory activity observed in the brain. Here we develop and study an alternative encoding scheme that instead uses sparsely-coded limit cycles to represent external input patterns/sequences. We establish conditions under which learned limit cycle representations arise reliably and dominate the dynamics in a SOM. These limit cycles tend to be relatively unique for different inputs, robust to perturbations, and fairly insensitive to timing. In spite of the continually changing activity in the map layer when a limit cycle representation is used, map formation continues to occur reliably. In a two-SOM architecture where each SOM represents a different sensory modality, we also show that after learning, limit cycles in one SOM can correctly evoke corresponding limit cycles in the other, and thus there is the potential for multi-SOM systems using limit cycles to work effectively as hetero-associative memories. While the results presented here are only first steps, they establish the viability of SOM models based on limit cycle activity patterns, and suggest that such models merit further study. Copyright © 2014 Elsevier Ltd. All rights reserved.

  1. Self-organization in three-dimensional compressible magnetohydrodynamic flow

    International Nuclear Information System (INIS)

    Horiuchi, Ritoku; Sato, Tetsuya.

    1987-07-01

    A three-dimensional self-organization process of a compressible dissipative plasma with a velocity-magnetic field correlation is investigated in detail by means of a variational method and a magnetohydrodynamic simulation. There are two types of relaxation, i.e., fast relaxation in which the cross helicity is not conserved, and slow relaxation in which the cross helicity is approximately conserved. In the slow relaxation case the cross helicity consists of two components with opposite sign which have almost the same amplitude in the large wavenumber region. In both cases the system approaches a high correlation state, dependent on the initial condition. These results are consistent with an observational data of the solar wind. Selective dissipation of magnetic energy, normal cascade of magnetic energy spectrum and inverse cascade of magnetic helicity spectrum are observed for the sub-Alfvenic flow case as was previously observed for the zero flow case. When the flow velocity is super-Alfvenic, the relaxation process is significantly altered from the zero flow case. (author)

  2. Self-organization of intracellular gradients during mitosis

    Directory of Open Access Journals (Sweden)

    Fuller Brian G

    2010-01-01

    Full Text Available Abstract Gradients are used in a number of biological systems to transmit spatial information over a range of distances. The best studied are morphogen gradients where information is transmitted over many cell lengths. Smaller mitotic gradients reflect the need to organize several distinct events along the length of the mitotic spindle. The intracellular gradients that characterize mitosis are emerging as important regulatory paradigms. Intracellular gradients utilize intrinsic auto-regulatory feedback loops and diffusion to establish stable regions of activity within the mitotic cytosol. We review three recently described intracellular mitotic gradients. The Ran GTP gradient with its elaborate cascade of nuclear transport receptors and cargoes is the best characterized, yet the dynamics underlying the robust gradient of Ran-GTP have received little attention. Gradients of phosphorylation have been observed on Aurora B kinase substrates both before and after anaphase onset. In both instances the phosphorylation gradient appears to result from a soluble gradient of Aurora B kinase activity. Regulatory properties that support gradient formation are highlighted. Intracellular activity gradients that regulate localized mitotic events bare several hallmarks of self-organizing biologic systems that designate spatial information during pattern formation. Intracellular pattern formation represents a new paradigm in mitotic regulation.

  3. Benefits of Self-Organizing Networks (SON for Mobile Operators

    Directory of Open Access Journals (Sweden)

    Olav Østerbø

    2012-01-01

    Full Text Available Self-Organizing Networks (SON is a collection of functions for automatic configuration, optimization, diagnostisation and healing of cellular networks. It is considered to be a necessity in future mobile networks and operations due to the increased cost pressure. The main drivers are essentially to reduce CAPEX and OPEX, which would otherwise increase dramatically due to increased number of network parameters that has to be monitored and set, the rapidly increasing numbers of base stations in the network and parallel operation of 2G, 3G and Evolved Packet Core (EPC infrastructures. This paper presents evaluations on the use of some of the most important SON components. Mobile networks are getting more complex to configure, optimize and maintain. Many SON functions will give cost savings and performance benefits from the very beginning of a network deployment and these should be prioritized now. But even if many functions are already available and can give large benefits, the field is still in its infancy and more advanced functions are either not yet implemented or have immature implementations. It is therefore necessary to have a strategy for how and when different SON functions should be introduced in mobile networks.

  4. Spontaneous neuronal activity as a self-organized critical phenomenon

    Science.gov (United States)

    de Arcangelis, L.; Herrmann, H. J.

    2013-01-01

    Neuronal avalanches are a novel mode of activity in neuronal networks, experimentally found in vitro and in vivo, and exhibit a robust critical behaviour. Avalanche activity can be modelled within the self-organized criticality framework, including threshold firing, refractory period and activity-dependent synaptic plasticity. The size and duration distributions confirm that the system acts in a critical state, whose scaling behaviour is very robust. Next, we discuss the temporal organization of neuronal avalanches. This is given by the alternation between states of high and low activity, named up and down states, leading to a balance between excitation and inhibition controlled by a single parameter. During these periods both the single neuron state and the network excitability level, keeping memory of past activity, are tuned by homeostatic mechanisms. Finally, we verify if a system with no characteristic response can ever learn in a controlled and reproducible way. Learning in the model occurs via plastic adaptation of synaptic strengths by a non-uniform negative feedback mechanism. Learning is a truly collective process and the learning dynamics exhibits universal features. Even complex rules can be learned provided that the plastic adaptation is sufficiently slow.

  5. Tetrakis(4-tert-butylphenyl) substituted and fused quinoidal porphyrins

    KAUST Repository

    Zeng, Wangdong

    2012-01-01

    4-tert-Butylphenyl-substituted and fused quinoidal porphyrins 1 and 2 are prepared for the first time. They show (1) intense one-photon absorption in the far-red/near-infrared region, (2) enhanced two-photon absorption compared with aromatic porphyrin monomers, and (3) amphoteric redox behavior. Their geometry and electronic structure are studied by DFT calculations. This journal is © 2012 The Royal Society of Chemistry.

  6. Investigation of the porphyrine role at the mechanism of radioprotection

    International Nuclear Information System (INIS)

    Demoukhamedova, S.D.; Alieva, I.N.; Aliev, D.I.

    2002-01-01

    Full text: To date, it is well known that unfavourable radioecological conditions capable effect on the oxygen transport system in an living organism, particularly, on the conformational state of hemoglobin. Underlying mechanism is more active autoxidation of Hb(O 2 )4 into met-hemoglobin. Decreasing of the oxygen binding to the heme group of protein as a result of modified effect of ionization was observed into peripheral blood of people living on the polluted territory. Porphyrin, the main component of hemoglobin has been showed a wide range radioprotector properties. So, the conformational reorganization of the porphyrin ring plays an important role at the mechanism of hemoglobin functioning. In this report the result of conformational study, quantum-chemical calculations and theoretical calculation of frequencies and intensities of normal oscillations of IR-absorption spectrum of the porphyrin molecule at the NO-binding are presented. Computational program 'LEV' was used in all carried calculations. Due to changes into IR-spectrum of different complexes, the mechanism underlying the ligand bond formation are discussed. The theoretical frequencies of normal oscillations, satisfactorily described the porphyrin experimental IR-spectrum are received. On the base of both obtained normal oscillation forms and potential energy distribution of vibrational coordinates the detailed theoretical interpretation of the porphyrin molecule vibrational spectrum as well as the analysis of the nature of each absorption band the porphyrin molecule IR-spectrum have been carried out. Porphyrin molecule force field analysis has been showed that the ring electron density is irregular. The results of this study may be used at the theoretical calculations of IR-absorption spectrum of different metallo complexes of the porphyrin

  7. Analysis of self-organized In(Ga)As quantum structures with the scanning transmission electron microscope

    International Nuclear Information System (INIS)

    Sauerwald, Andres

    2008-01-01

    Aim of this thesis was to apply the analytical methods of the scanning transmission electron microscopy to the study of self-organized In(Ga)As quantum structures. With the imaging methods Z contrast and bright field (position resolutions in the subnanometer range) and especially with the possibilities of the quantitative chemical EELS analysis of the scanning transmission electron microscope (STEM) fundamental questions concerning morphology and chemical properties of self-organized quantum structures should be answered. By the high position resolution of the STEM among others essentail morphological and structural parameters in the growth behaviour of ''dot in a well'' (DWell) structures and of vertically correlated quantum dots (QDs) could be analyzed. For the optimization of DWell structures samples were studied, the nominal InAs-QD growth position was directedly varied within the embedding InGaAs quantum wells. The STEM offers in connection with the EELS method a large potential for the chemical analysis of quantum structures. Studied was a sample series of self-organized InGaAs/GaAs structures on GaAs substrate, the stress of which was changed by varying the Ga content of the INGaAs material between 2.4 % and 4.3 % [de

  8. Polarization-driven self-organization of silver nanoparticles in 1D and 2D subwavelength gratings for plasmonic photocatalysis

    Science.gov (United States)

    Baraldi, G.; Bakhti, S.; Liu, Z.; Reynaud, S.; Lefkir, Y.; Vocanson, F.; Destouches, N.

    2017-01-01

    One of the main challenges in plasmonics is to conceive large-scale, low-cost techniques suitable for the fabrication of metal nanoparticle patterns showing precise spatial organization. Here, we introduce a simple method based on continuous-wave laser illumination to induce the self-organization of silver nanoparticles within high-index thin films. We show that highly regular and homogeneous nanoparticle gratings can be produced on large areas using laser-controlled self-organization processes. This very versatile technique can provide 1D and 2D patterns at a subwavelength scale with tunable features. It does not need any stabilization or expensive devices, such as those required by optical or electron lithography, and is rapid to implement. Accurate in-plane and in-depth characterizations provide valuable information to explain the mechanisms that lead to pattern formation and especially how 2D self-organization can fall into place with successive laser scans. The regular and homogeneous 2D self-organization of metallic NPs with a single laser scan is also reported for the first time in this article. As the reported nanostructures are embedded in porous TiO2, we also theoretically explore the interesting potential of organization on the photocatalytic activity of Ag-NP-containing TiO2 porous films, which is one of the most promising materials for self-cleaning or remediation applications. Realistic electromagnetic simulations demonstrate that the periodic organization of silver nanoparticles can increase the light intensity within the film more than ten times that produced with randomly distributed nanoparticles, leading as expected to enhanced photocatalytic efficiency.

  9. Impact of iron porphyrin complexes when hydroprocessing algal HTL biocrude

    Energy Technology Data Exchange (ETDEWEB)

    Jarvis, Jacqueline M.; Sudasinghe, Nilusha M.; Albrecht, Karl O.; Schmidt, Andrew J.; Hallen, Richard T.; Anderson, Daniel B.; Billing, Justin M.; Schaub, Tanner M.

    2016-10-01

    We apply Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) for direct characterization of iron-porphyrins in hydrothermal liquefaction (HTL) biocrude oils derived from two algae: Tetraselmis sp. and cyanobacteria. The ironporphyrin compounds are shown to cause catalyst bed plugging during hydroprocessing due to iron deposition. Inductively-coupled plasma optical emission spectrometry (ICPOES) was utilized for iron quantitation in the plugged catalyst beds formed through hydroprocessing of the two HTL biocrudes and identifies an enrichment of iron in the upper five centimeters of the catalyst bed for Tetraselmis sp. (Fe=100,728 ppm) and cyanobacteria (Fe=115,450 ppm). Direct infusion FT-ICR MS analysis of the two HTL biocrudes with optimized instrument conditions facilitates rapid screening and identification of iron-porphyrins without prior chromatographic separation. With FT-ICR MS we identify 138 unique iron-porphyrin compounds in the two HTL biocrudes that are structurally similar to metal-porphyrins (e.g. Ni and V) observed in petroleum. No ironporphyrins are observed in the cyanobacteria HTL biocrude after hydroprocessing, which indicates that iron-porphyrin structures in the HTL biocrude are degraded during hydroprocessing. Hydrodemetallization reactions that occur through hydroprocessing of HTL biocrudes could be responsible for the decomposition of iron-porphyrin structures leading to metal deposition in the catalyst bed that result in catalyst deactivation and bed plugging, and must be addressed for effective upgrading of algal HTL biocrudes.

  10. Pre-Columbian agricultural landscapes, ecosystem engineers, and self-organized patchiness in Amazonia.

    Science.gov (United States)

    McKey, Doyle; Rostain, Stéphen; Iriarte, José; Glaser, Bruno; Birk, Jago Jonathan; Holst, Irene; Renard, Delphine

    2010-04-27

    The scale and nature of pre-Columbian human impacts in Amazonia are currently hotly debated. Whereas pre-Columbian people dramatically changed the distribution and abundance of species and habitats in some parts of Amazonia, their impact in other parts is less clear. Pioneer research asked whether their effects reached even further, changing how ecosystems function, but few in-depth studies have examined mechanisms underpinning the resilience of these modifications. Combining archeology, archeobotany, paleoecology, soil science, ecology, and aerial imagery, we show that pre-Columbian farmers of the Guianas coast constructed large raised-field complexes, growing on them crops including maize, manioc, and squash. Farmers created physical and biogeochemical heterogeneity in flat, marshy environments by constructing raised fields. When these fields were later abandoned, the mosaic of well-drained islands in the flooded matrix set in motion self-organizing processes driven by ecosystem engineers (ants, termites, earthworms, and woody plants) that occur preferentially on abandoned raised fields. Today, feedbacks generated by these ecosystem engineers maintain the human-initiated concentration of resources in these structures. Engineer organisms transport materials to abandoned raised fields and modify the structure and composition of their soils, reducing erodibility. The profound alteration of ecosystem functioning in these landscapes coconstructed by humans and nature has important implications for understanding Amazonian history and biodiversity. Furthermore, these landscapes show how sustainability of food-production systems can be enhanced by engineering into them follows that maintain ecosystem services and biodiversity. Like anthropogenic dark earths in forested Amazonia, these self-organizing ecosystems illustrate the ecological complexity of the legacy of pre-Columbian land use.

  11. Stable anodes for lithium ion batteries made of self-organized mesoporous silicon

    International Nuclear Information System (INIS)

    Wolter, Sascha J; Köntges, Marc; Brendel, Rolf; Bahnemann, Detlef

    2016-01-01

    Alloy-forming compounds, such as electrodes for lithium ion batteries, stand out in terms of their theoretical specific charge capacity while still lacking in mechanical stability due to significant volume changes during operation. Herein, we examine the approach of combining low structural dimensions of the active material with built-in expansion volumes and assess their benefit for silicon anodes in lithium ion batteries. Consequently, self-organized mesoporous silicon is prepared as a suitable anode material for lithium ion batteries without any pre-structuring methods. The anodes are made by employing electrochemical etching methods in a scalable process and are characterized by ellipsometry. Thermally evaporated copper is utilized as the current collector. A sheet of freestanding silicon in contact with copper is used as an anode material with a thickness of 3 μm. After an initialization phase, electrochemical characterization reveals an anode stability of more than 160 cycles with a specific charge capacity of 730 mAh/g. The mechanical stability of the anode is examined by taking SEM measurements of the used electrode material. (paper)

  12. Self-organizing groups : conditions and constraints in a sociotechnical perspective

    NARCIS (Netherlands)

    van der Zwaan, A.H.; Molleman, E.

    1998-01-01

    An increased level of self-organization, particularly in autonomous work teams, is widely believed to be a necessary part of a successful firm and a factor in many modern restructuring initiatives. This article investigates the limitations of self-organized groups and surveys these limitations from

  13. Structural hierarchy in flow-aligned hexagonally self-organized microphases with parallel polyelectrolytic structures

    NARCIS (Netherlands)

    Ruotsalainen, T; Torkkeli, M; Serimaa, R; Makela, T; Maki-Ontto, R; Ruokolainen, J; ten Brinke, G; Ikkala, O; Mäkelä, Tapio; Mäki-Ontto, Riikka

    2003-01-01

    We report a novel structural hierarchy where a flow-aligned hexagonal self-organized structure is combined with a polyelectrolytic self-organization on a smaller length scale and where the two structures are mutually parallel. Polystyrene-block-poly(4-vinylpyridine) (PS-block-P4VP) is selected with

  14. Hierarchical self-organization of non-cooperating individuals.

    Directory of Open Access Journals (Sweden)

    Tamás Nepusz

    Full Text Available Hierarchy is one of the most conspicuous features of numerous natural, technological and social systems. The underlying structures are typically complex and their most relevant organizational principle is the ordering of the ties among the units they are made of according to a network displaying hierarchical features. In spite of the abundant presence of hierarchy no quantitative theoretical interpretation of the origins of a multi-level, knowledge-based social network exists. Here we introduce an approach which is capable of reproducing the emergence of a multi-levelled network structure based on the plausible assumption that the individuals (representing the nodes of the network can make the right estimate about the state of their changing environment to a varying degree. Our model accounts for a fundamental feature of knowledge-based organizations: the less capable individuals tend to follow those who are better at solving the problems they all face. We find that relatively simple rules lead to hierarchical self-organization and the specific structures we obtain possess the two, perhaps most important features of complex systems: a simultaneous presence of adaptability and stability. In addition, the performance (success score of the emerging networks is significantly higher than the average expected score of the individuals without letting them copy the decisions of the others. The results of our calculations are in agreement with a related experiment and can be useful from the point of designing the optimal conditions for constructing a given complex social structure as well as understanding the hierarchical organization of such biological structures of major importance as the regulatory pathways or the dynamics of neural networks.

  15. Biomechanical factors contributing to self-organization in seagrass landscapes

    Science.gov (United States)

    Fonseca, M.S.; Koehl, M.A.R.; Kopp, B.S.

    2007-01-01

    Field observations have revealed that when water flow is consistently from one direction, seagrass shoots align in rows perpendicular to the primary axis of flow direction. In this study, live Zostera marina shoots were arranged either randomly or in rows perpendicular to the flow direction and tested in a seawater flume under unidirectional flow and waves to determine if shoot arrangement: a) influenced flow-induced force on individual shoots, b) differentially altered water flow through the canopy, and c) influenced light interception by the canopy. In addition, blade breaking strength was compared with flow-induced force to determine if changes in shoot arrangement might reduce the potential for damage to shoots. Under unidirectional flow, both current velocity in the canopy and force on shoots were significantly decreased when shoots were arranged in rows as compared to randomly. However, force on shoots was nearly constant with downstream distance, arising from the trade-off of shoot bending and in-canopy flow reduction. The coefficient of drag was higher for randomly-arranged shoots at low velocities (rows tended to intercept slightly more light than those arranged randomly. Effects of shoot arrangement under waves were less clear, potentially because we did not achieve the proper plant size?row spacing ratio. At this point, we may only suggest that water motion, as opposed to light capture, is the dominant physical mechanism responsible for these shoot arrangements. Following a computation of the Environmental Stress Factor, we concluded that even photosynthetically active blades may be damaged or broken under frequently encountered storm conditions, irrespective of shoot arrangement. We hypothesize that when flow is generally from one direction, seagrass bed patterns over multiple scales of consideration may arise as a cumulative effect of individual shoot self-organization driven by reduced force and drag on the shoots and somewhat improved light capture.

  16. 25 Years of Self-organized Criticality: Concepts and Controversies

    Science.gov (United States)

    Watkins, Nicholas W.; Pruessner, Gunnar; Chapman, Sandra C.; Crosby, Norma B.; Jensen, Henrik J.

    2016-01-01

    Introduced by the late Per Bak and his colleagues, self-organized criticality (SOC) has been one of the most stimulating concepts to come out of statistical mechanics and condensed matter theory in the last few decades, and has played a significant role in the development of complexity science. SOC, and more generally fractals and power laws, have attracted much comment, ranging from the very positive to the polemical. The other papers (Aschwanden et al. in Space Sci. Rev., 2014, this issue; McAteer et al. in Space Sci. Rev., 2015, this issue; Sharma et al. in Space Sci. Rev. 2015, in preparation) in this special issue showcase the considerable body of observations in solar, magnetospheric and fusion plasma inspired by the SOC idea, and expose the fertile role the new paradigm has played in approaches to modeling and understanding multiscale plasma instabilities. This very broad impact, and the necessary process of adapting a scientific hypothesis to the conditions of a given physical system, has meant that SOC as studied in these fields has sometimes differed significantly from the definition originally given by its creators. In Bak's own field of theoretical physics there are significant observational and theoretical open questions, even 25 years on (Pruessner 2012). One aim of the present review is to address the dichotomy between the great reception SOC has received in some areas, and its shortcomings, as they became manifest in the controversies it triggered. Our article tries to clear up what we think are misunderstandings of SOC in fields more remote from its origins in statistical mechanics, condensed matter and dynamical systems by revisiting Bak, Tang and Wiesenfeld's original papers.

  17. On the self-organized critical state of Vesuvio volcano

    Science.gov (United States)

    Luongo, G.; Mazzarella, A.; Palumbo, A.

    1996-01-01

    The catalogue of volcanic earthquakes recorded at Vesuvio (1972-1993) is shown to be complete for events with magnitude enclosed between 1.8 and 3.0. Such a result is converted in significant fractal laws (power laws) relating the distribution of earthquakes to the distribution of energy release, seismic moment, size of fractured zone and linear dimension of faults. The application of the Cantor dust model to time sequence of Vesuvio seismic and eruptive events allows the determination of significant time-clustering fractal structures. In particular, the Vesuvio eruptive activity shows a double-regime process with a stronger clustering on short-time scales than on long-time scales. The complexity of the Vesuvio system does not depend on the number of geological, geophysical and geochemical factors that govern it, but mainly on the number of their interconnections, on the intensity of such linkages and on the feed-back processes. So, all the identified fractal features are taken as evidence that the Vesuvio system is in a self-organized critical state i.e., in a marginally stable state in which a small perturbation can start a chain reaction that can lead to catastrophe. After the catatrophe, the system regulates itself and begins a new cycle, not necessarily periodic, that will end with a successive catastrophe. The variations of the fractal dimension and of the specific scale ranges, in which the fractal behaviour is found to hold, serve as possible volcanic predictors reflecting changes of the same volcanic process.

  18. Identification of lithofacies using Kohonen self-organizing maps

    Science.gov (United States)

    Chang, H.-C.; Kopaska-Merkel, D. C.; Chen, H.-C.

    2002-01-01

    Lithofacies identification is a primary task in reservoir characterization. Traditional techniques of lithofacies identification from core data are costly, and it is difficult to extrapolate to non-cored wells. We present a low-cost automated technique using Kohonen self-organizing maps (SOMs) to identify systematically and objectively lithofacies from well log data. SOMs are unsupervised artificial neural networks that map the input space into clusters in a topological form whose organization is related to trends in the input data. A case study used five wells located in Appleton Field, Escambia County, Alabama (Smackover Formation, limestone and dolomite, Oxfordian, Jurassic). A five-input, one-dimensional output approach is employed, assuming the lithofacies are in ascending/descending order with respect to paleoenvironmental energy levels. To consider the possible appearance of new logfacies not seen in training mode, which may potentially appear in test wells, the maximum number of outputs is set to 20 instead of four, the designated number of lithosfacies in the study area. This study found eleven major clusters. The clusters were compared to depositional lithofacies identified by manual core examination. The clusters were ordered by the SOM in a pattern consistent with environmental gradients inferred from core examination: bind/boundstone, grainstone, packstone, and wackestone. This new approach predicted lithofacies identity from well log data with 78.8% accuracy which is more accurate than using a backpropagation neural network (57.3%). The clusters produced by the SOM are ordered with respect to paleoenvironmental energy levels. This energy-related clustering provides geologists and petroleum engineers with valuable geologic information about the logfacies and their interrelationships. This advantage is not obtained in backpropagation neural networks and adaptive resonance theory neural networks. ?? 2002 Elsevier Science Ltd. All rights reserved.

  19. Self-organization of spatial patterning in human embryonic stem cells

    Science.gov (United States)

    Deglincerti, Alessia; Etoc, Fred; Ozair, M. Zeeshan; Brivanlou, Ali H.

    2017-01-01

    The developing embryo is a remarkable example of self-organization, where functional units are created in a complex spatio-temporal choreography. Recently, human embryonic stem cells (ESCs) have been used to recapitulate in vitro the self-organization programs that are executed in the embryo in vivo. This represents a unique opportunity to address self-organization in humans that is otherwise not addressable with current technologies. In this essay, we review the recent literature on self-organization of human ESCs, with a particular focus on two examples: formation of embryonic germ layers and neural rosettes. Intriguingly, both activation and elimination of TGFβ signaling can initiate self-organization, albeit with different molecular underpinnings. We discuss the mechanisms underlying the formation of these structures in vitro and explore future challenges in the field. PMID:26970615

  20. Self-Organization of Spatial Patterning in Human Embryonic Stem Cells.

    Science.gov (United States)

    Deglincerti, Alessia; Etoc, Fred; Ozair, M Zeeshan; Brivanlou, Ali H

    2016-01-01

    The developing embryo is a remarkable example of self-organization, where functional units are created in a complex spatiotemporal choreography. Recently, human embryonic stem cells (ESCs) have been used to recapitulate in vitro the self-organization programs that are executed in the embryo in vivo. This represents an unique opportunity to address self-organization in humans that is otherwise not addressable with current technologies. In this chapter, we review the recent literature on self-organization of human ESCs, with a particular focus on two examples: formation of embryonic germ layers and neural rosettes. Intriguingly, both activation and elimination of TGFβ signaling can initiate self-organization, albeit with different molecular underpinnings. We discuss the mechanisms underlying the formation of these structures in vitro and explore future challenges in the field. © 2016 Elsevier Inc. All rights reserved.

  1. Influence of substituents in meso-aryl groups of iron l-oxo porphyrins\

    Czech Academy of Sciences Publication Activity Database

    Tabor, Edyta; Poltowicz, J.; Pamin, K.; Basag, S.; Kubiak, W.

    2016-01-01

    Roč. 119, NOV 2016 (2016), s. 342-349 ISSN 0277-5387 Institutional support: RVO:61388955 Keywords : iron porphyrins * μ-Oxo porphyrins * oxidation Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 1.926, year: 2016

  2. Porphyrin nanorods characterisation for an artificial light harvesting and energy transfer system

    CSIR Research Space (South Africa)

    Mongwaketsi, N

    2010-01-01

    Full Text Available s 1 0 h r s 1 3 h r s 1 5 h r s 1 8 h r s Porphyrin Nanorods Characterization for an Artificial Light Harvesting and Energy Transfer System Nametso Mongwaketsi1,2,3, Raymond Sparrow2, Bert Klumperman3, Malik Maaza1 1 NanoSciences Lab..., Materials Research Dept, iThemba LABS, PO Box 722, Somerset West, 7129, South Africa 2 CSIR Biosciences, PO Box 395, Pretoria, 0001, South Africa 3 Stellenbosch University, Department of Chemistry and Polymer Science, Private Bag X 1, Matieland, 7602...

  3. Deterministic self-organization: Ordered positioning of InAs quantum dots by self-organized anisotropic strain engineering on patterned GaAs(311)B

    International Nuclear Information System (INIS)

    Selcuk, E.; Hamhuis, G.J.; Noetzel, R.

    2009-01-01

    Laterally ordered InGaAs quantum dot (QD) arrays, InAs QD molecules, and single InAs QDs in a spot-like periodic arrangement are created by self-organized anisotropic strain engineering of InGaAs/GaAs superlattice (SL) templates on planar GaAs (311)B substrates in molecular beam epitaxy. On shallow- and deep-patterned substrates the respectively generated steps and facets guide the self-organization process during SL template formation to create more complex ordering such as periodic stripes, depending on pattern design. Here we demonstrate for patterns such as shallow- and deepetched round holes and deep-etched zigzag mesas that the self-organized periodic arrangement of QD molecules and single QDs is spatially locked to the pattern sidewalls and corners. This extends the concept of guided self-organization to deterministic self-organization. Absolute position control of the QDs is achieved without one-to-one pattern definition. This guarantees the excellent arrangement control of the ordered QD molecules and single QDs with strong photoluminescence emission up to room temperature, which is required for future quantum functional devices. (copyright 2009 WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim) (orig.)

  4. Evolutionary Cell Computing: From Protocells to Self-Organized Computing

    Science.gov (United States)

    Colombano, Silvano; New, Michael H.; Pohorille, Andrew; Scargle, Jeffrey; Stassinopoulos, Dimitris; Pearson, Mark; Warren, James

    2000-01-01

    On the path from inanimate to animate matter, a key step was the self-organization of molecules into protocells - the earliest ancestors of contemporary cells. Studies of the properties of protocells and the mechanisms by which they maintained themselves and reproduced are an important part of astrobiology. These studies also have the potential to greatly impact research in nanotechnology and computer science. Previous studies of protocells have focussed on self-replication. In these systems, Darwinian evolution occurs through a series of small alterations to functional molecules whose identities are stored. Protocells, however, may have been incapable of such storage. We hypothesize that under such conditions, the replication of functions and their interrelationships, rather than the precise identities of the functional molecules, is sufficient for survival and evolution. This process is called non-genomic evolution. Recent breakthroughs in experimental protein chemistry have opened the gates for experimental tests of non-genomic evolution. On the basis of these achievements, we have developed a stochastic model for examining the evolutionary potential of non-genomic systems. In this model, the formation and destruction (hydrolysis) of bonds joining amino acids in proteins occur through catalyzed, albeit possibly inefficient, pathways. Each protein can act as a substrate for polymerization or hydrolysis, or as a catalyst of these chemical reactions. When a protein is hydrolyzed to form two new proteins, or two proteins are joined into a single protein, the catalytic abilities of the product proteins are related to the catalytic abilities of the reactants. We will demonstrate that the catalytic capabilities of such a system can increase. Its evolutionary potential is dependent upon the competition between the formation of bond-forming and bond-cutting catalysts. The degree to which hydrolysis preferentially affects bonds in less efficient, and therefore less well

  5. Expression cartography of human tissues using self organizing maps

    Directory of Open Access Journals (Sweden)

    Löffler Markus

    2011-07-01

    Full Text Available Abstract Background Parallel high-throughput microarray and sequencing experiments produce vast quantities of multidimensional data which must be arranged and analyzed in a concerted way. One approach to addressing this challenge is the machine learning technique known as self organizing maps (SOMs. SOMs enable a parallel sample- and gene-centered view of genomic data combined with strong visualization and second-level analysis capabilities. The paper aims at bridging the gap between the potency of SOM-machine learning to reduce dimension of high-dimensional data on one hand and practical applications with special emphasis on gene expression analysis on the other hand. Results The method was applied to generate a SOM characterizing the whole genome expression profiles of 67 healthy human tissues selected from ten tissue categories (adipose, endocrine, homeostasis, digestion, exocrine, epithelium, sexual reproduction, muscle, immune system and nervous tissues. SOM mapping reduces the dimension of expression data from ten of thousands of genes to a few thousand metagenes, each representing a minicluster of co-regulated single genes. Tissue-specific and common properties shared between groups of tissues emerge as a handful of localized spots in the tissue maps collecting groups of co-regulated and co-expressed metagenes. The functional context of the spots was discovered using overrepresentation analysis with respect to pre-defined gene sets of known functional impact. We found that tissue related spots typically contain enriched populations of genes related to specific molecular processes in the respective tissue. Analysis techniques normally used at the gene-level such as two-way hierarchical clustering are better represented and provide better signal-to-noise ratios if applied to the metagenes. Metagene-based clustering analyses aggregate the tissues broadly into three clusters containing nervous, immune system and the remaining tissues

  6. Covalent growth factor tethering to direct neural stem cell differentiation and self-organization.

    Science.gov (United States)

    Ham, Trevor R; Farrag, Mahmoud; Leipzig, Nic D

    2017-04-15

    Tethered growth factors offer exciting new possibilities for guiding stem cell behavior. However, many of the current methods present substantial drawbacks which can limit their application and confound results. In this work, we developed a new method for the site-specific covalent immobilization of azide-tagged growth factors and investigated its utility in a model system for guiding neural stem cell (NSC) behavior. An engineered interferon-γ (IFN-γ) fusion protein was tagged with an N-terminal azide group, and immobilized to two different dibenzocyclooctyne-functionalized biomimetic polysaccharides (chitosan and hyaluronan). We successfully immobilized azide-tagged IFN-γ under a wide variety of reaction conditions, both in solution and to bulk hydrogels. To understand the interplay between surface chemistry and protein immobilization, we cultured primary rat NSCs on both materials and showed pronounced biological effects. Expectedly, immobilized IFN-γ increased neuronal differentiation on both materials. Expression of other lineage markers varied depending on the material, suggesting that the interplay of surface chemistry and protein immobilization plays a large role in nuanced cell behavior. We also investigated the bioactivity of immobilized IFN-γ in a 3D environment in vivo and found that it sparked the robust formation of neural tube-like structures from encapsulated NSCs. These findings support a wide range of potential uses for this approach and provide further evidence that adult NSCs are capable of self-organization when exposed to the proper microenvironment. For stem cells to be used effectively in regenerative medicine applications, they must be provided with the appropriate cues and microenvironment so that they integrate with existing tissue. This study explores a new method for guiding stem cell behavior: covalent growth factor tethering. We found that adding an N-terminal azide-tag to interferon-γ enabled stable and robust Cu-free 'click

  7. Bottom-up self-organization in supramolecular soft matter principles and prototypical examples of recent advances

    CERN Document Server

    Parisi, Jürgen

    2015-01-01

    This book presents the general concepts of self-organized spatio-temporal ordering processes. These concepts are demonstrated via prototypical examples of recent advances in materials science. Particular emphasis is on nanoscale soft matter in physics, chemistry, biology and biomedicine. The questions addressed embrace a broad spectrum of complex nonlinear phenomena, ranging from self-assembling near the thermodynamical equilibrium to dissipative structure formation far from equilibrium. Their mutual interplay gives rise to increasing degrees of hierarchical order. Analogues are pointed out, differences characterized and efforts are made to reveal common features in the mechanistic description of those phenomena.  .

  8. Metal-like self-organization of periodic nanostructures on silicon and silicon carbide under femtosecond laser pulses

    International Nuclear Information System (INIS)

    Gemini, Laura; Hashida, Masaki; Shimizu, Masahiro; Miyasaka, Yasuhiro; Inoue, Shunsuke; Tokita, Shigeki; Sakabe, Shuji; Limpouch, Jiri; Mocek, Tomas

    2013-01-01

    Periodic structures were generated on Si and SiC surfaces by irradiation with femtosecond laser pulses. Self-organized structures with spatial periodicity of approximately 600 nm appear on silicon and silicon carbide in the laser fluence range just above the ablation threshold and upon irradiation with a large number of pulses. As in the case of metals, the dependence of the spatial periodicity on laser fluence can be explained by the parametric decay of laser light into surface plasma waves. The results show that the proposed model might be universally applicable to any solid state material

  9. Pattern classification and recognition of invertebrate functional groups using self-organizing neural networks.

    Science.gov (United States)

    Zhang, WenJun

    2007-07-01

    Self-organizing neural networks can be used to mimic non-linear systems. The main objective of this study is to make pattern classification and recognition on sampling information using two self-organizing neural network models. Invertebrate functional groups sampled in the irrigated rice field were classified and recognized using one-dimensional self-organizing map and self-organizing competitive learning neural networks. Comparisons between neural network models, distance (similarity) measures, and number of neurons were conducted. The results showed that self-organizing map and self-organizing competitive learning neural network models were effective in pattern classification and recognition of sampling information. Overall the performance of one-dimensional self-organizing map neural network was better than self-organizing competitive learning neural network. The number of neurons could determine the number of classes in the classification. Different neural network models with various distance (similarity) measures yielded similar classifications. Some differences, dependent upon the specific network structure, would be found. The pattern of an unrecognized functional group was recognized with the self-organizing neural network. A relative consistent classification indicated that the following invertebrate functional groups, terrestrial blood sucker; terrestrial flyer; tourist (nonpredatory species with no known functional role other than as prey in ecosystem); gall former; collector (gather, deposit feeder); predator and parasitoid; leaf miner; idiobiont (acarine ectoparasitoid), were classified into the same group, and the following invertebrate functional groups, external plant feeder; terrestrial crawler, walker, jumper or hunter; neustonic (water surface) swimmer (semi-aquatic), were classified into another group. It was concluded that reliable conclusions could be drawn from comparisons of different neural network models that use different distance

  10. Supramolecular assemblies of pyridyl porphyrin and diazadithia phthalocyanine

    Directory of Open Access Journals (Sweden)

    OZER BEKAROGLU

    1999-08-01

    Full Text Available In this paper we report for the first time on a mixed complex between the cationic porphyrin 5, 10, 15, 20-tetra-N- -methyl-pyrydinium-p-il porphyrin (TMPyP and a new metal phthalocyanine with four 16-membered diazadithia macrocycles (denoted here as Pc16, in order to obtain an active complex with an intense absorption on the lower energy side of the visible spectrum and with a higher sensitivity in photodynamic therapy of cancer. The dimerization constant for Pc16 and also the ratio between the oscillator strengths for monomeric and dimeric forms of this compound, were evaluated. The ratio between these oscillator strengths was 2.01 showing a certain dimerization process. The Job mathematical method allowed the establishment of the stoichiometry and the formation constants for the heteroaggregates between the porphyrin and the phthalocy- anine (a diad between one phthalocyanine molecule and one porphyrin molecule and a triad between two phthalocyanine molecules and only one porphyrin molecule. The coulombic attraction resulting from the p-p interaction of the two highly conjugated macrocycles and from the interaction between the substituents, favors a face-to-face geometry.

  11. Self-organization observed in either fusion or strongly coupled plasmas

    International Nuclear Information System (INIS)

    Himura, Haruhiko; Sanpei, Akio

    2011-01-01

    If self-organization happens in the fusion plasma, the plasma alters its shape by weakening the confining magnetic field. The self-organized plasma is stable and robust, so its configuration is conserved even during transport in asymmetric magnetic fields. The self-organization of the plasma is driven by an electrostatic potential. Examples of the plasma that has such strong potential are non-neutral plasmas of pure ions or electrons and dusty plasmas. In the present paper, characteristic phenomena of strongly coupled plasmas such as particle aggregation and formation of the ordered structure are discussed. (T.I.)

  12. Self-organization scenario acting as physical basis of intelligent complex systems created in laboratory

    International Nuclear Information System (INIS)

    Lozneanu, Erzilia; Sanduloviciu, Mircea

    2006-01-01

    The recognition of limits in the tendency to miniaturize the so-called self-organizing devices inspired scientists to seek inspiration from living organisms that operate with functional elements that employ thermal energy exploiting quantum phenomena. Here we show how such operations are performed by a complex space charge configuration emerged by self-organization in plasma. Endowed with a special kind of memory, the complexity is able to ensure its survival in a metastable state performing the operations 'learned' during its emergence by self-organization. Possessing memory, the complexity works as an intelligent system able to evolve under suitable environmental conditions

  13. Self-organized magnetic particles to tune the mechanical behavior of a granular system

    Science.gov (United States)

    Cox, Meredith; Wang, Dong; Barés, Jonathan; Behringer, Robert P.

    2016-09-01

    Above a certain density a granular material jams. This property can be controlled by either tuning a global property, such as the packing fraction or by applying shear strain, or at the micro-scale by tuning grain shape, inter-particle friction or externally controlled organization. Here, we introduce a novel way to change a local granular property by adding a weak anisotropic magnetic interaction between particles. We measure the evolution of the pressure, P, and coordination number, Z, for a packing of 2D photo-elastic disks, subject to uniaxial compression. A fraction R m of the particles have embedded cuboidal magnets. The strength of the magnetic interactions between particles is too weak to have a strong direct effect on P or Z when the system is jammed. However, the magnetic interactions play an important role in the evolution of latent force networks when systems containing a large enough fraction of the particles with magnets are driven through unjammed to jammed states. In this case, a statistically stable network of magnetic chains self-organizes before jamming and overlaps with force chains once jamming occurs, strengthening the granular medium. This property opens a novel way to control mechanical properties of granular materials.

  14. Self-organizing Systems in the Light of the Arrows of Orderedness, Symmetry, and Entropy

    Directory of Open Access Journals (Sweden)

    György Darvas

    2008-07-01

    Full Text Available The paper makes an attempt to resolve two conceptual mingling: (a the mingling of the two interpretations of the concept of orderedness applied in statistical thermodynamics and in symmetrology, and (b the mingling of two interpretations of evolution applied in global and local processes. In conclusion, it formulates a new interpretation on the relation of the emergence of new material qualities in selforganizing processes on the one hand, and the evolution of the universe, on the other. The process of evolution is a sequence of emergence of new material qualities by self-organization processes, which happen in negligible small segments of the universe. Although thermodynamics looks at the universe as a closed (isolated system, this holds for its outside boundaries only, while the universe has many subsystems inside, which are not isolated (closed, since they are in a permanent exchange of matter, energy, etc. with their environment (with the rest of the universe through their open boundaries. Any ";;emergence";; takes place, i.e., all new qualities come into being just in these small open segments of the universe. The conditions to apply the second law of thermodynamics are not present here. Therefore, global evolution of the universe is the consequence of local symmetry decreases, local decreases of orderedness, and possible local decreases of entropy.

  15. Multi-step intramolecular excitation energy transfer in dendritic pyrene-phosphorus(V)porphyrin heptads

    International Nuclear Information System (INIS)

    Hirakawa, Kazutaka; Segawa, Hiroshi

    2016-01-01

    Dendritic heptad molecules in which four pyrenyl groups are connected at the central phosphorus atom of the edge-porphyrins of the center-to-edge type porphyrin trimers were synthesized to investigate a multi-step excitation energy transfer. As the central energy acceptor, two types porphyrins which one was phosphorus(V)tetraphenylporphyrin (H2) and another was its derivative substituted by butoxy groups at four para-position of meso-phenyl groups (H1) were used. In the photoexcited state of the pyrene units, the excitation energy transfer to the central-porphyrin unit was observed in toluene. The excitation energy transfer is considered to be through two pathways; one is a stepwise pathway through the edge-porphyrin unit and another is a direct excitation energy transfer to the central porphyrin. The direct excitation energy transfer from pyrenes to the edge-porphyrin and central-porphyrin were observed in the case for H1. From the excited state of the edge-porphyrins, the excitation energy transfer to the central-porphyrin occurs in the H1 case. In the H2 case, the excitation energy of central-porphyrin is higher than that of H1, and the electron transfer from edge-porphyrin to the central-porphyrin become predominant process. - Highlights: • Dendritic pyrene-porphyrin heptads were synthesized. • Excitation energy transfer occurs from the pyrenyl moiety to the phosphorus(V)porphyrin. • The stepwise and direct energy transfer pathways were observed. • The quantum yields of these energy transfer pathways could be determined.

  16. Multi-step intramolecular excitation energy transfer in dendritic pyrene-phosphorus(V)porphyrin heptads

    Energy Technology Data Exchange (ETDEWEB)

    Hirakawa, Kazutaka, E-mail: hirakawa.kazutaka@shizuoka.ac.jp [Applied Chemistry and Biochemical Engineering Course, Department of Engineering, Graduate School of Integrated Science and Technology, Shizuoka University, Johoku 3-5-1, Naka-ku, Hamamatsu, Shizuoka 432-8561 (Japan); Department of Optoelectronics and Nanostructure Science, Graduate School of Science and Technology, Shizuoka University, Johoku 3-5-1, Naka-ku, Hamamatsu, Shizuoka 432-8561 (Japan); Segawa, Hiroshi [Department of Multi-Disciplinary Science - General Systems Studies, Graduate School of Arts and Sciences, The University of Tokyo, Komaba 3-8-1, Meguro-ku, Tokyo 153-8904 (Japan); Research Center for Advanced Science and Technology, The University of Tokyo, Komaba 4-6-1, Meguro-ku, Tokyo 153-8904 (Japan)

    2016-11-15

    Dendritic heptad molecules in which four pyrenyl groups are connected at the central phosphorus atom of the edge-porphyrins of the center-to-edge type porphyrin trimers were synthesized to investigate a multi-step excitation energy transfer. As the central energy acceptor, two types porphyrins which one was phosphorus(V)tetraphenylporphyrin (H2) and another was its derivative substituted by butoxy groups at four para-position of meso-phenyl groups (H1) were used. In the photoexcited state of the pyrene units, the excitation energy transfer to the central-porphyrin unit was observed in toluene. The excitation energy transfer is considered to be through two pathways; one is a stepwise pathway through the edge-porphyrin unit and another is a direct excitation energy transfer to the central porphyrin. The direct excitation energy transfer from pyrenes to the edge-porphyrin and central-porphyrin were observed in the case for H1. From the excited state of the edge-porphyrins, the excitation energy transfer to the central-porphyrin occurs in the H1 case. In the H2 case, the excitation energy of central-porphyrin is higher than that of H1, and the electron transfer from edge-porphyrin to the central-porphyrin become predominant process. - Highlights: • Dendritic pyrene-porphyrin heptads were synthesized. • Excitation energy transfer occurs from the pyrenyl moiety to the phosphorus(V)porphyrin. • The stepwise and direct energy transfer pathways were observed. • The quantum yields of these energy transfer pathways could be determined.

  17. Self-organized ignition of a tokamak plasma

    International Nuclear Information System (INIS)

    Schoepf, K.

    2007-01-01

    The continuous progress in the attainment of plasma parameters required for establishing nuclear fusion in magnetically confined plasmas as well as the prospect of feasible steady-state operation has instigated the interest in the physics of burning plasmas [1]. Aside from the required plasma current drive, fusion energy production with tokamaks demands particular attention to confinement and fuelling regimes in order to maintain the plasma density n and temperature T at favourable values matching with specific requirements such as the triple product nτ E T, where τ E represents the plasma energy confinement time. The identification of state and parameter space regions capable of ignited fusion plasma operation is evidently crucial if significant energy gains are to be realized over longer periods. Examining the time-evolving state of tokamak fusion plasma in a parameter space spanned by the densities of plasma constituents and their temperatures has led to the formation of an ignition criterion [2] fundamentally different from the commonly used static patterns. The incorporation of non-stationary particle and energy balances into the analysis here, the application of a 'soft' Troyon beta limit [3], the consideration of actual fusion power deposition [4,5] and its effect of reducing τ E are seen to significantly influence the fusion burn dynamics and to shape the ignition conditions. The presented investigation refers to a somewhat upgraded (to achieve ignition) ITER-like tokamak plasma and uses volume averages of locally varying quantities and processes. The resulting ignition criterion accounts for the dynamic evolution of a reacting plasma controlled by heating and fuel feeding. Interestingly, also self-organized ignition can be observed: a fusion plasma possessing a density and temperature above a distinct separatrix in the considered parameter phase space is seen to evolve - without external heating and hence practically by itself - towards an ignited

  18. MINERALOGY OF HALLOYSITES AND THEIR INTERACTION WITH PORPHYRINE

    Directory of Open Access Journals (Sweden)

    Vašutová V.

    2013-09-01

    Full Text Available Samples representing two modifications of halloysites, dehydrated (7 Å and hydrated (10 Å forms, respectively, were examined with the aim to select suitable candidates for to be used as carriers of porphyrine photoactive molecules. The samples were analysed by powder X-ray diffraction (pXRD, infrared spectroscopy (FT-IR, and high resolution transmission electron microscopy (HRTEM. Chemical composition was also determined. For the determination of cationic exchange capacity (CEC the silver thiourea method (AgTU was used. Silver cations concentrations in the solution before and after the interaction were determined by atomic absorption spectrometry (AAS. By the interaction of two pure hydrated halloysites with porphyrine it was found that porphyrine does not intercalate the interlayer space, but it is adsorbed on the outer surface of halloysite. This interaction changed the colour of clay sample from white to green. The changes were also clearly visible on diffuse reflectance spectra (DRS.

  19. Platinum porphyrins as ionophores in polymeric membrane electrodes

    DEFF Research Database (Denmark)

    Lvova, Larisa; Verrelli, Giorgio; Nardis, Sara

    2011-01-01

    A comparative study of Pt(II)- and Pt(IV)-porphyrins as novel ionophores for anion-selective polymeric membrane electrodes is performed. Polymeric membranes of different compositions, prepared by varying plasticizers, cationic and anionic additives and Pt porphyrins, have been examined...... within the electrode membranes, while those based on Pt(IV)TPPCl2 operate via a mixed mode carrier mechanism, evidencing also a partial reduction of the starting ionophore to Pt(II)TPP. Spectrophotometric measurements of thin polymeric films indicate that no spontaneous formation of hydroxide ion bridged...... porphyrin dimers occurs in the membrane plasticized both with high or low dielectric constant plasticizer, due to a low oxophilicity of central Pt. The computational study of various anion–Pt(IV)TPPCl2 complex formation by means of semi-empirical and density functional theory (DFT) methods revealed a good...

  20. Interaction of porphyrins with CdTe quantum dots

    International Nuclear Information System (INIS)

    Zhang Xing; Liu Zhongxin; Ma Lun; Hossu, Marius; Chen Wei

    2011-01-01

    Porphyrins may be used as photosensitizers for photodynamic therapy, photocatalysts for organic pollutant dissociation, agents for medical imaging and diagnostics, applications in luminescence and electronics. The detection of porphyrins is significantly important and here the interaction of protoporphyrin-IX (PPIX) with CdTe quantum dots was studied. It was observed that the luminescence of CdTe quantum dots was quenched dramatically in the presence of PPIX. When CdTe quantum dots were embedded into silica layers, almost no quenching by PPIX was observed. This indicates that PPIX may interact and alter CdTe quantum dots and thus quench their luminescence. The oxidation of the stabilizers such as thioglycolic acid (TGA) as well as the nanoparticles by the singlet oxygen generated from PPIX is most likely responsible for the luminescence quenching. The quenching of quantum dot luminescence by porphyrins may provide a new method for photosensitizer detection.

  1. Role of complement in porphyrin-induced photosensitivity

    International Nuclear Information System (INIS)

    Lim, H.W.; Gigli, I.

    1981-01-01

    Addition of porphyrins to sera of guinea pigs in vitro, followed by irradiation with 405 nm light, resulted in dose-dependent inhibitions of hemolytic activity of complement. With guinea pig as an animal model, we also found that systemically administered porphyrins, followed by irradiation with 405 nm light, resulted in dose-dependent inhibition of CH50 in vivo. The erythrocytes from porphyrin-treated guinea pigs showed an increased susceptibility to hemolysis induced by 405 nm irradiation in vitro. Clinical changes in these animals were limited to light-exposed areas and consisted of erythema, crusting, and delayed growth of hair. Histologically, dermal edema, dilation of blood vessels, and infiltration of mononuclear and polymorphonuclear cells were observed. Guinea pigs irradiated with ultraviolet-B developed erythema, but had no alteration of their complement profiles. It is suggested that complement products may play a specific role in the pathogenesis of the cutaneous lesions of some porphyrias

  2. Theoretical study on junctions in porphyrin oligomers for nano scale devices

    International Nuclear Information System (INIS)

    Mizuseki, Hiroshi; Belosludov, Rodion V.; Farajian, Amir A.; Igarashi, Nobuaki; Kawazoe, Yoshiyuki

    2005-01-01

    A unimolecular rectifier could be built by combining two molecular sub-units that contain acceptor or donor groups. Porphyrin possesses good electron-donating properties due to its large, easily ionized, π-conjugated system. In this study, we propose that a rectifier diode could be created by combining two metal porphyrin molecules containing different metal atoms. This function would realize an effect similar to a p-n junction in a solid-state device. A Zn porphyrin-Ni porphyrin junction in a non-conjugated porphyrin system displays a localization of frontier orbitals that is similar to a rectifier function

  3. Self-organization process of a magnetohydrodynamic plasma in the presence of thermal conduction

    International Nuclear Information System (INIS)

    Zhu, Shao-ping; Horiuchi, Ritoku; Sato, Tetsuya; Watanabe, K.; Hayashi, T.; Todo, Y.; Watanabe, T.H.; Kageyama, A.; Takamaru, H.

    1995-12-01

    A self-organization process of a magnetohydrodynamic(MHD) plasma with a finite thermal conductivity is investigated by means of a three-dimensional MHD simulation. With no thermal conduction an MHD system self-organizes to a non-Taylor's state in which the electric current perpendicular to the magnetic field remains comparable to the parallel electric current. In the presence of thermal conductivity the perpendicular component of electric current and the nonuniformity of thermal pressure generated by driven reconnection tend to be smoothened. Thus, the self-organized state approaches to a force-free minimum energy state under the influence of thermal conduction. Detailed energy conversion processes are also studied to find that the rapid decay of magnetic energy during the self-organization process is caused not only through the ohmic heating, but also through the work done by the j x B force. (author)

  4. Exploitation of Self Organization in UAV Swarms for Optimization in Combat Environments

    National Research Council Canada - National Science Library

    Nowak, Dustin J

    2008-01-01

    ...) swarms using autonomous self-organized cooperative control. This development required the design of a new abstract UAV swarm control model which flows from an abstract Markov structure, a Partially Observable Markov Decision Process...

  5. Self-organization and oscillation of negatively charged dust particles in a 2-dimensional dusty plasma

    Energy Technology Data Exchange (ETDEWEB)

    Song, Y.L. [College of Science, China Agricultural University, Beijing 100083 (China); Huang, F., E-mail: huangfeng@cau.edu.cn [College of Science, China Agricultural University, Beijing 100083 (China); Chen, Z.Y., E-mail: chenzy@mail.buct.edu.cn [Department of Physics, Beijing University of Chemical Technology, Beijing 100029 (China); State Key Laboratory of Laser Propulsion & Application, Beijing 101416 (China); Liu, Y.H. [School of Physics and Optoelectronic Engineering, Ludong University, Yantai 264025 (China); Yu, M.Y. [Institute for Fusion Theory and Simulation, Zhejiang University, Hangzhou 310027 (China); Institute for Theoretical Physics I, Ruhr University, D-44801 Bochum (Germany)

    2016-02-22

    Negatively charged dust particles immersed in 2-dimensional dusty plasma system are investigated by molecular dynamics simulations. The effects of the confinement potential and attraction interaction potential on dust particle self-organization are studied in detail and two typical dust particle distributions are obtained when the system reaches equilibrium. The average radial velocity (ARV), average radial force (ARF) and radial mean square displacement are employed to analyze the dust particles' dynamics. Both ARVs and ARFs exhibit oscillation behaviors when the simulation system reaches equilibrium state. The relationships between the oscillation and confinement potential and attraction potential are studied in this paper. The simulation results are qualitatively similar to experimental results. - Highlights: • Self-organization and oscillation of a 2-dimensional dusty plasma is investigated. • Effect of the confinement potential on dust self-organization and oscillation is given. • Effect of the attraction potential on dust self-organization and oscillation is studied.

  6. Revisit to self-organization of solitons for dissipative Korteweg-de Vries equation

    International Nuclear Information System (INIS)

    Kondoh, Y.; Van Dam, J.W.

    1995-03-01

    The process by which self-organization occurs for solitons described by the Korteweg-de Vries (KdV) equation with a viscous dissipation term is reinvestigated theoretically, with the use of numerical simulations in a periodic system. It is shown that, during nonlinear interactions, two basic processes for the self-organization of solitons are energy transfer and selective dissipation among the eigenmodes of the dissipative operator. It is also clarified that an important process during nonlinear self-organization is an interchange between the dominant operators, which has hitherto been overlooked in conventional self-organization theories and which leads to a final self-similar coherent structure determined uniquely by the dissipative operator

  7. Self-organization and oscillation of negatively charged dust particles in a 2-dimensional dusty plasma

    International Nuclear Information System (INIS)

    Song, Y.L.; Huang, F.; Chen, Z.Y.; Liu, Y.H.; Yu, M.Y.

    2016-01-01

    Negatively charged dust particles immersed in 2-dimensional dusty plasma system are investigated by molecular dynamics simulations. The effects of the confinement potential and attraction interaction potential on dust particle self-organization are studied in detail and two typical dust particle distributions are obtained when the system reaches equilibrium. The average radial velocity (ARV), average radial force (ARF) and radial mean square displacement are employed to analyze the dust particles' dynamics. Both ARVs and ARFs exhibit oscillation behaviors when the simulation system reaches equilibrium state. The relationships between the oscillation and confinement potential and attraction potential are studied in this paper. The simulation results are qualitatively similar to experimental results. - Highlights: • Self-organization and oscillation of a 2-dimensional dusty plasma is investigated. • Effect of the confinement potential on dust self-organization and oscillation is given. • Effect of the attraction potential on dust self-organization and oscillation is studied.

  8. Self-Organizing Neural Circuits for Sensory-Guided Motor Control

    National Research Council Canada - National Science Library

    Grossberg, Stephen

    1999-01-01

    The reported projects developed mathematical models to explain how self-organizing neural circuits that operate under continuous or intermittent sensory guidance achieve flexible and accurate control of human movement...

  9. Online Self-Organizing Network Control with Time Averaged Weighted Throughput Objective

    Directory of Open Access Journals (Sweden)

    Zhicong Zhang

    2018-01-01

    Full Text Available We study an online multisource multisink queueing network control problem characterized with self-organizing network structure and self-organizing job routing. We decompose the self-organizing queueing network control problem into a series of interrelated Markov Decision Processes and construct a control decision model for them based on the coupled reinforcement learning (RL architecture. To maximize the mean time averaged weighted throughput of the jobs through the network, we propose a reinforcement learning algorithm with time averaged reward to deal with the control decision model and obtain a control policy integrating the jobs routing selection strategy and the jobs sequencing strategy. Computational experiments verify the learning ability and the effectiveness of the proposed reinforcement learning algorithm applied in the investigated self-organizing network control problem.

  10. Effects of Some Neurobiological Factors in a Self-organized Critical Model Based on Neural Networks

    International Nuclear Information System (INIS)

    Zhou Liming; Zhang Yingyue; Chen Tianlun

    2005-01-01

    Based on an integrate-and-fire mechanism, we investigate the effect of changing the efficacy of the synapse, the transmitting time-delayed, and the relative refractoryperiod on the self-organized criticality in our neural network model.

  11. Linear electro-optic coefficient in multilayer self-organized InAs quantum dot structures

    NARCIS (Netherlands)

    Akca, I.B.; Dana, A.; Aydinli, A.; Rossetti, M.; Li, L.; Dagli, N.; Fiore, A.

    2007-01-01

    The electro-optic coefficients of self-organized InAs quantum dot layers in molecular beam epitaxy grown laser structures in reverse bias have been investigated. Enhanced electrooptic coefficients compared to bulk GaAs were observed.

  12. Effects of Immersion Solvent on Photovoltaic and Photophysical Properties of Porphyrin-Sensitized Solar Cells.

    Science.gov (United States)

    Hayashi, Hironobu; Higashino, Tomohiro; Kinjo, Yuriko; Fujimori, Yamato; Kurotobi, Kei; Chabera, Pavel; Sundström, Villy; Isoda, Seiji; Imahori, Hiroshi

    2015-08-26

    Memory effects in self-assembled monolayers (SAMs) of zinc porphyrin carboxylic acid on TiO2 electrodes have been demonstrated for the first time by evaluating the photovoltaic and electron transfer properties of porphyrin-sensitized solar cells prepared by using different immersion solvents sequentially. The structure of the SAM of the porphyrin on the TiO2 was maintained even after treating the porphyrin monolayer with different neat immersion solvents (memory effect), whereas it was altered by treatment with solutions containing different porphyrins (inverse memory effect). Infrared spectroscopy shows that the porphyrins in the SAM on the TiO2 could be exchanged with the same or analogous porphyrin, leading to a change in the structure of the porphyrin SAM. The memory and inverse memory effects are well correlated with a change in porphyrin geometry, mainly the tilt angle of the porphyrin along the long molecular axis from the surface normal on the TiO2, as well as with kinetics of electron transfer between the porphyrin and TiO2. Such a new structure-function relationship for DSSCs will be very useful for the rational design and optimization of photoelectrochemical and photovoltaic properties of molecular assemblies on semiconductor surfaces.

  13. Self organization of wireless sensor networks using ultra-wideband radios

    Science.gov (United States)

    Dowla, Farid U [Castro Valley, CA; Nekoogar, Franak [San Ramon, CA; Spiridon, Alex [Palo Alto, CA

    2009-06-16

    A novel UWB communications method and system that provides self-organization for wireless sensor networks is introduced. The self-organization is in terms of scalability, power conservation, channel estimation, and node synchronization in wireless sensor networks. The UWB receiver in the present invention adds two new tasks to conventional TR receivers. The two additional units are SNR enhancing unit and timing acquisition and tracking unit.

  14. Free Energy Rate Density and Self-organization in Complex Systems

    OpenAIRE

    Georgiev, Georgi Yordanov; Gombos, Erin; Bates, Timothy; Henry, Kaitlin; Casey, Alexander; Daly, Michael

    2015-01-01

    One of the most important tasks in science is to understand the self-organization's arrow of time. To attempt this we utilize the connection between self-organization and non-equilibrium thermodynamics. Eric Chaisson calculated an exponential increase of Free Energy Rate Density (FERD) in Cosmic Evolution, from the Big Bang until now, paralleling the increase of system's structure. We term these studies "Devology". We connect FERD to the principle of least action for complex systems, driving ...

  15. Anomalous relaxation and self-organization in non-equilibrium processes

    OpenAIRE

    Fatkullin, Ibrahim; Kladko, Konstantin; Mitkov, Igor; Bishop, A. R.

    2000-01-01

    We study thermal relaxation in ordered arrays of coupled nonlinear elements with external driving. We find, that our model exhibits dynamic self-organization manifested in a universal stretched-exponential form of relaxation. We identify two types of self-organization, cooperative and anti-cooperative, which lead to fast and slow relaxation, respectively. We give a qualitative explanation for the behavior of the stretched exponent in different parameter ranges. We emphasize that this is a sys...

  16. Laser Control of Self-Organization Process in Microscopic Region and Fabrication of Fine Microporous Structure

    OpenAIRE

    Matsumura, Yukimasa; Inami, Wataru; Kawata, Yoshimasa

    2012-01-01

    We present a controlling technique of microporous structure by laser irradiation during self-organization process. Self-organization process is fabrication method of microstructure. Polymer solution was dropped on the substrate at high humid condition. Water in air appears dropping air temperature below the dew point. The honeycomb structure with regularly aligned pores on the film was fabricated by attaching water droplets onto the solution surface. We demonstrate that it was possible to pre...

  17. Leader Election and Shape Formation with Self-Organizing Programmable Matter

    OpenAIRE

    Daymude, Joshua J.; Derakhshandeh, Zahra; Gmyr, Robert; Strothmann, Thim; Bazzi, Rida; Richa, Andréa W.; Scheideler, Christian

    2015-01-01

    We consider programmable matter consisting of simple computational elements, called particles, that can establish and release bonds and can actively move in a self-organized way, and we investigate the feasibility of solving fundamental problems relevant for programmable matter. As a suitable model for such self-organizing particle systems, we will use a generalization of the geometric amoebot model first proposed in SPAA 2014. Based on the geometric model, we present efficient local-control ...

  18. Antibatic photovoltaic response in zinc-porphyrin-liked oligothiophenes

    DEFF Research Database (Denmark)

    Krebs, Frederik C; Spanggaard, H.

    2005-01-01

    -stannylchloride and subsequent palladium catalysed Stille coupling. We further synthesised 5,15-bis(3, 4', 4", 4"', 4", 4""', 4""", 4"""'-octahexyl-[2, 2'; 5', 2" 5", 2'"; 5"', 2""; 5"", 2""'; 5""', 2"""; 5""", 2"""']octithiophene-5-yl)-10, 20-bis(3, 5-ditertbutylphenyl)zinc(II)porphyrin (5) from trimethyl(3, 4', 4", 4'", 4......"", 4""', 4""", 4"""'-Octahexyl-[2, 2'; 5', 2"; 5"; 2'"; 5"', 2""; 5"", 2"'"; 5""', 2"""; 5""", 2"""']octithiophene-5-yl)stannane (3-SnMe3) and 5, 15-dibromo-10, 20-bis(3, 5-ditertbutylphenyl)zinc(II)porphyrin (6) by Stille coupling. All the products were characterised by size exclusion chromatography...

  19. Porphyrin-based polymeric nanostructures for light harvesting applications: Ab initio calculations

    Science.gov (United States)

    Orellana, Walter

    The capture and conversion of solar energy into electricity is one of the most important challenges to the sustainable development of mankind. Among the large variety of materials available for this purpose, porphyrins concentrate great attention due to their well-known absorption properties in the visible range. However, extended materials like polymers with similar absorption properties are highly desirable. In this work, we investigate the stability, electronic and optical properties of polymeric nanostructures based on free-base porphyrins and phthalocyanines (H2P, H2Pc), within the framework of the time-dependent density functional perturbation theory. The aim of this work is the stability, electronic, and optical characterization of polymeric sheets and nanotubes obtained from H2P and H2Pc monomers. Our results show that H2P and H2Pc sheets exhibit absorption bands between 350 and 400 nm, slightly different that the isolated molecules. However, the H2P and H2Pc nanotubes exhibit a wide absorption in the visible and near-UV range, with larger peaks at 600 and 700 nm, respectively, suggesting good characteristic for light harvesting. The stability and absorption properties of similar structures obtained from ZnP and ZnPc molecules is also discussed. Departamento de Ciencias Físicas, República 220, 037-0134 Santiago, Chile.

  20. Biomimetic Self-Organization and Self-Healing

    DEFF Research Database (Denmark)

    Lenau, Torben Anker; Hesselberg, Thomas

    2013-01-01

    of the important role of biophysics. Some physical applications include adhesion superhydrophobicity and self-cleaning, structural coloration, photonic devices, biomaterials and composite materials, sensor systems, robotics and locomotion, and ultra-lightweight structures. Explores biomimicry, a fast...... and vision sensors, Engineered Biomimicry explores a wide range of technologies informed by living natural systems. Engineered Biomimicry helps physicists, engineers and material scientists seek solutions in nature to the most pressing technical problems of our times, while providing a solid understanding...

  1. Self-organized dysprosium-directed alginate hydrogels and its chemical features

    Energy Technology Data Exchange (ETDEWEB)

    Ma, Qianmin [School of Chemistry and Environment, South China Normal University, Guangzhou 510006 (China); Gao, Jinwei [Institute for Advanced Materials, Academy of Advanced Optoelectronics, South China Normal University, Guangzhou 510006 (China); Peng, Huojun [School of Chemistry and Environment, South China Normal University, Guangzhou 510006 (China); Wang, Qianming, E-mail: qmwang@scnu.edu.cn [Key Laboratory of Theoretical Chemistry of Environment, Ministry of Education, School of Chemistry and Environment, South China Normal University, Guangzhou 510006 (China); School of Chemistry and Environment, South China Normal University, Guangzhou 510006 (China); Guangzhou Key Laboratory of Materials for Energy Conversion and Storage, Guangzhou 510006 (China)

    2016-09-15

    Rational use of self-organized materials may contribute in developing new structures and devices in practical technology. Synthetic metallo-supramolecular gels are generally designed with transitional metal-directed process. However, the assembly of both lanthanide and sodium alginate in macromolecular systems would find a new way of utilizing its physical properties. The stimuli-responsive molecule (alginate) could firmly form stable hydrogels upon the encapsulation of dysprosium ions. In addition, the immobilization of YVO{sub 4}: Eu{sup 3+} nanoparticle in the soft matrix has been achieved and it has never been explored in the fabrication of phosphor-incorporated luminescent alginate gels. The key feature of the present soft matter is that its red emission could be switched off in the presence of sodium ascorbate and the results may have a tremendous impact on the extension of photophysical application based on soft nanoscale devices. - Highlights: • Dy{sup 3+} can be used for the gelation of the dissolved alginate. • Lanthanide hydrogels could exhibit red emissions under excitations. • Luminescence could be switched “off” in the presence of sodium ascorbate.

  2. Porphyrin-based magnetic nanocomposites for efficient extraction of polycyclic aromatic hydrocarbons from water samples.

    Science.gov (United States)

    Yu, Jing; Zhu, Shukui; Pang, Liling; Chen, Pin; Zhu, Gang-Tian

    2018-03-09

    Stable and reusable porphyrin-based magnetic nanocomposites were successfully synthesized for efficient extraction of polycyclic aromatic hydrocarbons (PAHs) from environmental water samples. Meso-Tetra (4-carboxyphenyl) porphyrin (TCPP), a kind of porphyrin, can connect the copolymer after amidation and was linked to Fe 3 O 4 @SiO 2 magnetic nanospheres via cross-coupling. Several characteristic techniques such as field emission scanning electron microscopy, transmission electron microscopy, X-ray diffraction, Fourier transform infrared spectrometry, vibrating sample magnetometry and a tensiometer were used to characterize the as-synthesized materials. The structure of the copolymer was similar to that of graphene, possessing sp 2 -conjugated carbon rings, but with an appropriate amount of delocalized π-electrons giving rise to the higher extraction efficiency for heavy PAHs without sacrificing the performance in the extraction of light PAHs. Six extraction parameters, including the TCPP:Fe 3 O 4 @SiO 2 (m:m) ratio, the amount of adsorbents, the type of desorption solvent, the desorption solvent volume, the adsorption time and the desorption time, were investigated. After the optimization of extraction conditions, a comparison of the extraction efficiency of Fe 3 O 4 @SiO 2 -TCPP and Fe 3 O 4 @SiO 2 @GO was carried out. The adsorption mechanism of TCPP to PAHs was studied by first-principles density functional theory (DFT) calculations. Combining experimental and calculated results, it was shown that the π-π stacking interaction was the main adsorption mechanism of TCPP for PAHs and that the amount of delocalized π-electrons plays an important role in the elution process. Under the optimal conditions, Fe 3 O 4 @SiO 2 -porphyrin showed good precision in intra-day (<8.9%) and inter-day (<13.0%) detection, low method detection limits (2-10 ng L -1 ), and wide linearity (10-10000 ng L -1 ). The method was applied to simultaneous analysis of 15 PAHs with

  3. Electroreduction of CO2 Catalyzed by a Heterogenized Zn–Porphyrin Complex with a Redox-Innocent Metal Center

    Science.gov (United States)

    2017-01-01

    Transition-metal-based molecular complexes are a class of catalyst materials for electrochemical CO2 reduction to CO that can be rationally designed to deliver high catalytic performance. One common mechanistic feature of these electrocatalysts developed thus far is an electrogenerated reduced metal center associated with catalytic CO2 reduction. Here we report a heterogenized zinc–porphyrin complex (zinc(II) 5,10,15,20-tetramesitylporphyrin) as an electrocatalyst that delivers a turnover frequency as high as 14.4 site–1 s–1 and a Faradaic efficiency as high as 95% for CO2 electroreduction to CO at −1.7 V vs the standard hydrogen electrode in an organic/water mixed electrolyte. While the Zn center is critical to the observed catalysis, in situ and operando X-ray absorption spectroscopic studies reveal that it is redox-innocent throughout the potential range. Cyclic voltammetry indicates that the porphyrin ligand may act as a redox mediator. Chemical reduction of the zinc–porphyrin complex further confirms that the reduction is ligand-based and the reduced species can react with CO2. This represents the first example of a transition-metal complex for CO2 electroreduction catalysis with its metal center being redox-innocent under working conditions. PMID:28852698

  4. Fixed distance photoinduced electron transfer between Fe and Zn porphyrins encapsulated within the Zn HKUST-1 metal organic framework.

    Science.gov (United States)

    Larsen, Randy W; Wojtas, Lukasz

    2015-02-21

    An attractive strategy for the development of photocatalytic metal organic framework (MOF) materials is to co-encapsulate a photoactive electron donor with a catalytic electron acceptor within the MOF. Here we report the co-encapsulation of both Zn(ii) tetrakis(tetra 4-sulphonatophenyl)porphyrin (Zn4SP) and Fe(iii) tetrakis(tetra 4-sulphonatophenyl)porphyrin (Fe4SP) into an HKUST-1 (Zn) MOF and demonstrate photoinduced electron transfer (ET) between the co-encapsulated guest. Photo-excitation of the Zn4SP results in fixed-distance inter-molecular ET between the encapsulated (3)Zn4SP and the Fe(iii)4SP as evident by the reduction in the encapsulated (3)Zn4SP lifetime from 890 μs (kobs = 1.1 × 10(3) s(-1)) to 83 μs (kobs = 1.2 × 10(4) s(-1)) in the presence of Fe4SP giving a kET ∼ 1.1 × 10(4) s(-1). The data are consistent with ET taking place between encapsulated porphyrins that are two cages apart in distance with a reorganizational energy of ∼1.65 eV, β = 1.25 and ΔG° = -0.97 eV (within a semi-classical Marcus theory framework).

  5. Re(I) bridged porphyrin dyads, triads and tetrads

    Indian Academy of Sciences (India)

    DNA cleavage.4 Design strategies to develop solid-state multichromophore arrays of defined rigidity, ... lent synthetic strategies to porphyrin arrays have gen- erally proved quite limiting. The covalent synthetic ...... since retention times vary inversely with size.23 Pulsed- field-gradient NMR, which measures coefficients for.

  6. Interaction of porphyrins with PAMAM dendrimers in aqueous solution

    Czech Academy of Sciences Publication Activity Database

    Kubát, Pavel; Lang, Kamil; Zelinger, Zdeněk

    2007-01-01

    Roč. 131, - (2007), s. 200-205 ISSN 0167-7322 R&D Projects: GA ČR GA203/04/0426 Institutional research plan: CEZ:AV0Z40400503; CEZ:AV0Z40320502 Keywords : porphyrin * PAMAM dendrimer * aggragation Subject RIV: CF - Physical ; Theoretical Chemistry Impact factor: 0.982, year: 2007

  7. Trilobolide-porphyrin conjugates: On synthesis and biological effects evaluation

    Czech Academy of Sciences Publication Activity Database

    Tomanová, P.; Rimpelová, S.; Jurášek, M.; Buděšínský, Miloš; Vejvodová, L.; Ruml, T.; Kmoníčková, E.; Drašar, P. B.

    2015-01-01

    Roč. 97, SI (2015), s. 8-12 ISSN 0039-128X Grant - others:GA ČR(CZ) GA14-04329S; GA MŠk(CZ) ED2.1.00/03.0076 Institutional support: RVO:61388963 Keywords : trilobolide * porphyrin * nitric oxide * fluorescence microscopy Subject RIV: CE - Biochemistry Impact factor: 2.513, year: 2015

  8. Porphyrin involvement in redshift fluorescence in dentin decay

    Science.gov (United States)

    Slimani, A.; Panayotov, I.; Levallois, B.; Cloitre, T.; Gergely, C.; Bec, N.; Larroque, C.; Tassery, H.; Cuisinier, F.

    2014-05-01

    The aim of this study was to evaluate the porphyrin involvement in the red fluorescence observed in dental caries with Soprolife® light-induced fluorescence camera in treatments mode (SOPRO, ACTEON Group, La Ciotat, France) and Vistacam® camera (DÜRR DENTAL AG, Bietigheim-Bissingen, Germany). The International Caries Detection and Assessment System (ICDAS) was used to rand the samples. Human teeth cross-sections, ranked from ICDAS score 0 to 6, were examined by epi-fluorescence microscopy and Confocal Raman microscopy. Comparable studies were done with Protoporphyrin IX, Porphyrin I and Pentosidine solutions. An RGB analysis of Soprolife® images was performed using ImageJ Software (1.46r, National Institutes of Health, USA). Fluorescence spectroscopy and MicroRaman spectroscopy revealed the presence of Protoporphyrin IX, in carious enamel, dentin and dental plaque. However, the presence of porphyrin I and pentosidine cannot be excluded. The results indicated that not only porphyrin were implicated in the red fluorescence, Advanced Glygation Endproducts (AGEs) of the Maillard reaction also contributed to this phenomenon.

  9. Layered Hydroxide–Porphyrin Hybrid Materials: Synthesis, Structure, and Properties

    Czech Academy of Sciences Publication Activity Database

    Demel, Jan; Lang, Kamil

    2012-01-01

    Roč. 2012, č. 32 (2012), s. 5154-5164 ISSN 1434-1948 R&D Projects: GA ČR GAP207/10/1447 Institutional support: RVO:61388980 Keywords : layered compounds * intercalations * porphyrinoids * phthalocyanine s * singlet oxygen Subject RIV: CA - Inorganic Chemistry Impact factor: 3.120, year: 2012

  10. Integrating Flexible Sensor and Virtual Self-Organizing DC Grid Model With Cloud Computing for Blood Leakage Detection During Hemodialysis.

    Science.gov (United States)

    Huang, Ping-Tzan; Jong, Tai-Lang; Li, Chien-Ming; Chen, Wei-Ling; Lin, Chia-Hung

    2017-08-01

    Blood leakage and blood loss are serious complications during hemodialysis. From the hemodialysis survey reports, these life-threatening events occur to attract nephrology nurses and patients themselves. When the venous needle and blood line are disconnected, it takes only a few minutes for an adult patient to lose over 40% of his / her blood, which is a sufficient amount of blood loss to cause the patient to die. Therefore, we propose integrating a flexible sensor and self-organizing algorithm to design a cloud computing-based warning device for blood leakage detection. The flexible sensor is fabricated via a screen-printing technique using metallic materials on a soft substrate in an array configuration. The self-organizing algorithm constructs a virtual direct current grid-based alarm unit in an embedded system. This warning device is employed to identify blood leakage levels via a wireless network and cloud computing. It has been validated experimentally, and the experimental results suggest specifications for its commercial designs. The proposed model can also be implemented in an embedded system.

  11. Selective Magnetic Removal of Pb(II from Aqueous Solution by Porphyrin Linked-Magnetic Nanoparticles

    Directory of Open Access Journals (Sweden)

    H. Ghanbarnejad

    2012-12-01

    Full Text Available The discharge of lead containing effluents into the environment and water bodies is harmful for the human, animals, aquatic flora and fauna. Herein, a novel surface engineered magnetic nanoparticle for removing Pb2+  ions was studied. After surface modification of the magnetite by 3-amino-propyltriethoxysilane (APTES magnetic nanoparticles with covalently linked porphyrins were synthesized. Two atropisomers of  meso-tetrakis(2-carboxy-4-nonylphenyl porphyrin (TCNP were tested to analyze the atropisomeric effect on lead uptake. For characterize the synthesized nanosorbents methods like: Transform Infrared Spectroscopy, X-ray diffraction, Transmission Electron Microscopy and Thermo-Gravimetric Analysis were used. The effects of pH, contact time, sorbent dosage and some co-existing cations were investigated. Regeneration of lead adsorbed material could be possible and the modified magnetic nanoparticles exhibited good reusability. The use of such a system can provide fast and efficient removal of the lead ion by using an external magnetic field. The competitive adsorption tests showed good adsorption selectivity for lead ion.

  12. A learning heuristic for space mapping and searching self-organizing systems using adaptive mesh refinement

    Science.gov (United States)

    Phillips, Carolyn L.

    2014-09-01

    In a complex self-organizing system, small changes in the interactions between the system's components can result in different emergent macrostructures or macrobehavior. In chemical engineering and material science, such spontaneously self-assembling systems, using polymers, nanoscale or colloidal-scale particles, DNA, or other precursors, are an attractive way to create materials that are precisely engineered at a fine scale. Changes to the interactions can often be described by a set of parameters. Different contiguous regions in this parameter space correspond to different ordered states. Since these ordered states are emergent, often experiment, not analysis, is necessary to create a diagram of ordered states over the parameter space. By issuing queries to points in the parameter space (e.g., performing a computational or physical experiment), ordered states can be discovered and mapped. Queries can be costly in terms of resources or time, however. In general, one would like to learn the most information using the fewest queries. Here we introduce a learning heuristic for issuing queries to map and search a two-dimensional parameter space. Using a method inspired by adaptive mesh refinement, the heuristic iteratively issues batches of queries to be executed in parallel based on past information. By adjusting the search criteria, different types of searches (for example, a uniform search, exploring boundaries, sampling all regions equally) can be flexibly implemented. We show that this method will densely search the space, while preferentially targeting certain features. Using numerical examples, including a study simulating the self-assembly of complex crystals, we show how this heuristic can discover new regions and map boundaries more accurately than a uniformly distributed set of queries.

  13. Bionic catalysis of porphyrin for electrochemical detection of nucleic acids

    International Nuclear Information System (INIS)

    Li Jie; Lei Jianping; Wang Quanbo; Wang Peng; Ju Huangxian

    2012-01-01

    Highlights: ► This is the first application of bionic catalysis of porphyrin as detection probe in bioanalysis. ► Porphyrin–DNA–gold nanoparticle probe is synthesized. ► Binding model between FeTMPyP and DNA is verified. ► The detection probe shows excellent electrocatalytic behaviors toward the reduction of O 2 . ► The biosensor exhibited good performance with wide linear range and high specificity. - Abstract: A novel electrochemical strategy was designed for the detection of DNA based on the bionic catalysis of porphyrin. The detection probe was prepared via the assembly of thiolated double strand DNA (dsDNA) with gold nanoparticles (AuNPs), and then interacted with cationic iron (III) meso-tetrakis (N-methylphyridinum-4-yl) porphyrin (FeTMPyP) via groove binding along the dsDNA surface. The resulting nanocomplex was characterized with transmission electron microscopy, UV–vis absorption and circular dichroism spectroscopy. The FeTMPyP–DNA–AuNPs probe on gold electrode demonstrated the excellent electrocatalytic behaviors toward the reduction of O 2 due to the largely loading of FeTMPyP and good conductivity. Based on bionic catalysis of porphyrin for the reduction of O 2 , the resulting biosensor exhibited a good performance for the detection of DNA with a wide linear range from 1 × 10 −12 to 1 × 10 −8 mol L −1 and detection limit of 2.5 × 10 −13 mol L −1 at the signal/noise of 3. More importantly, the biosensor presented excellent ability to discriminate the perfectly complementary target and the mismatched stand. This strategy could be conveniently extended for detection of other biomolecules. To the best of our knowledge, this is the first application of bionic catalysis of porphyrin as detection probe and opens new opportunities for sensitive detection of biorecognition events.

  14. Identifying changes in dissolved organic matter content and characteristics by fluorescence spectroscopy coupled with self-organizing map and classification and regression tree analysis during wastewater treatment.

    Science.gov (United States)

    Yu, Huibin; Song, Yonghui; Liu, Ruixia; Pan, Hongwei; Xiang, Liancheng; Qian, Feng

    2014-10-01

    The stabilization of latent tracers of dissolved organic matter (DOM) of wastewater was analyzed by three-dimensional excitation-emission matrix (EEM) fluorescence spectroscopy coupled with self-organizing map and classification and regression tree analysis (CART) in wastewater treatment performance. DOM of water samples collected from primary sedimentation, anaerobic, anoxic, oxic and secondary sedimentation tanks in a large-scale wastewater treatment plant contained four fluorescence components: tryptophan-like (C1), tyrosine-like (C2), microbial humic-like (C3) and fulvic-like (C4) materials extracted by self-organizing map. These components showed good positive linear correlations with dissolved organic carbon of DOM. C1 and C2 were representative components in the wastewater, and they were removed to a higher extent than those of C3 and C4 in the treatment process. C2 was a latent parameter determined by CART to differentiate water samples of oxic and secondary sedimentation tanks from the successive treatment units, indirectly proving that most of tyrosine-like material was degraded by anaerobic microorganisms. C1 was an accurate parameter to comprehensively separate the samples of the five treatment units from each other, indirectly indicating that tryptophan-like material was decomposed by anaerobic and aerobic bacteria. EEM fluorescence spectroscopy in combination with self-organizing map and CART analysis can be a nondestructive effective method for characterizing structural component of DOM fractions and monitoring organic matter removal in wastewater treatment process. Copyright © 2014 Elsevier Ltd. All rights reserved.

  15. Mechanisms of self-organization and finite size effects in a minimal agent based model

    International Nuclear Information System (INIS)

    Alfi, V; Cristelli, M; Pietronero, L; Zaccaria, A

    2009-01-01

    We present a detailed analysis of the self-organization phenomenon in which the stylized facts originate from finite size effects with respect to the number of agents considered and disappear in the limit of an infinite population. By introducing the possibility that agents can enter or leave the market depending on the behavior of the price, it is possible to show that the system self-organizes in a regime with a finite number of agents which corresponds to the stylized facts. The mechanism for entering or leaving the market is based on the idea that a too stable market is unappealing for traders, while the presence of price movements attracts agents to enter and speculate on the market. We show that this mechanism is also compatible with the idea that agents are scared by a noisy and risky market at shorter timescales. We also show that the mechanism for self-organization is robust with respect to variations of the exit/entry rules and that the attempt to trigger the system to self-organize in a region without stylized facts leads to an unrealistic dynamics. We study the self-organization in a specific agent based model but we believe that the basic ideas should be of general validity

  16. Brain Basis of Self: Self-Organization and Lessons from Dreaming

    Directory of Open Access Journals (Sweden)

    David eKahn

    2013-07-01

    Full Text Available Through dreaming a different facet of the self is created as a result of a self-organizing process in the brain. Self-organization in biological systems often happens as an answer to an environmental change for which the existing system cannot cope; self-organization creates a system that can cope in the newly changed environment. In dreaming, self-organization serves the function of organizing disparate memories into a dream since the dreamer herself is not able to control how individual memories become weaved into a dream. The self-organized dream provides, thereby, a wide repertoire of experiences; this expanded repertoire of experience results in an expansion of the self beyond that obtainable when awake. Since expression of the self is associated with activity in specific areas of the brain, the article also discusses the brain basis of the self by reviewing studies of brain injured patients, discussing brain imaging studies in normal brain functioning when focused, when daydreaming and when asleep and dreaming.

  17. Analysis of mass incident diffusion in Weibo based on self-organization theory

    Science.gov (United States)

    Pan, Jun; Shen, Huizhang

    2018-02-01

    This study introduces some theories and methods of self-organization system to the research of the diffusion mechanism of mass incidents in Weibo (Chinese Twitter). Based on the analysis on massive Weibo data from Songjiang battery factory incident happened in 2013 and Jiiangsu Qidong OJI PAPER incident happened in 2012, we find out that diffusion system of mass incident in Weibo satisfies Power Law, Zipf's Law, 1/f noise and Self-similarity. It means this system is the self-organization criticality system and dissemination bursts can be understood as one kind of Self-organization behavior. As the consequence, self-organized criticality (SOC) theory can be used to explain the evolution of mass incident diffusion and people may come up with the right strategy to control such kind of diffusion if they can handle the key ingredients of Self-organization well. Such a study is of practical importance which can offer opportunities for policy makers to have good management on these events.

  18. Negotiation and Design for the Self-Organizing City. Gaming as a method for Urban Design

    Directory of Open Access Journals (Sweden)

    Ekim Tan

    2014-08-01

    Full Text Available An understanding of cities as open systems whose agents act on them simultaneously from below and above, influencing urban processes by their interaction with them and with each other, is replacing the simplistic debate on urban participation which asks whether cities should be organized bottom-up or top-down. This conceptualization of cities as complex systems calls for new collaborative city-making methods: a combination of collaborative planning (which already embraces various agencies and derives decision-making from negotiations between them and collaborative design (existing methods rely on rule-based iterative processes which control spatial outcomes. While current collaborative planning methods are open and interactive, they fail to simulate realistic power negotiations in the evolution of the physical environments they plan; collaborative design methods fall short in modelling the decision-making mechanisms of the physical environments they control. This research is dedicated to building an open negotiation and design method for cities as self-organizing systems that bridges this gap. Gaming as a tool for knowledge creation and negotiation serves as an interface between the more abstract decision-making and material city-making. Rarely involved in the creation of our environment, it has the unexplored potential of combining the socio-spatial dimensions of self-organizing urban processes. Diverse agents, the collaborations and conflicts within and between interest groups, and the parameters provided by topological data can all be combined in an operational form in gaming: potentially a great unifier of multiple stakeholder negotiations and individual design aspirations through which to generate popularly informed policies or design. The simple language and rules of games will allow jargon-free communication between stakeholders, experts and non-experts alike. The interactive and iterative nature of city gaming encourages the development

  19. Self-organizing bioinspired oligothiophene–oligopeptide hybrids

    Directory of Open Access Journals (Sweden)

    Alexey K. Shaytan

    2011-09-01

    Full Text Available In this minireview, we survey recent advances in the synthesis, characterization, and modeling of new oligothiophene–oligopeptide hybrids capable of forming nanostructured fibrillar aggregates in solution and on solid substrates. Compounds of this class are promising for applications because their self-assembly and stimuli-responsive properties, provided by the peptide moieties combined with the semiconducting properties of the thiophene blocks, can result in novel opportunities for the design of advanced smart materials. These bio-inspired molecular hybrids are experimentally shown to form stable fibrils as visualized by AFM and TEM. While the experimental evidence alone is not sufficient to reveal the exact molecular organization of the fibrils, theoretical approaches based on quantum chemistry calculations and large-scale atomistic molecular dynamics simulations are attempted in an effort to reveal the structure of the fibrils at the nanoscale. Based on the combined theoretical and experimental analysis, the most likely models of fibril formation and aggregation are suggested.

  20. Virtual spring damper method for nonholonomic robotic swarm self-organization and leader following

    Science.gov (United States)

    Wiech, Jakub; Eremeyev, Victor A.; Giorgio, Ivan

    2018-04-01

    In this paper, we demonstrate a method for self-organization and leader following of nonholonomic robotic swarm based on spring damper mesh. By self-organization of swarm robots we mean the emergence of order in a swarm as the result of interactions among the single robots. In other words the self-organization of swarm robots mimics some natural behavior of social animals like ants among others. The dynamics of two-wheel robot is derived, and a relation between virtual forces and robot control inputs is defined in order to establish stable swarm formation. Two cases of swarm control are analyzed. In the first case the swarm cohesion is achieved by virtual spring damper mesh connecting nearest neighboring robots without designated leader. In the second case we introduce a swarm leader interacting with nearest and second neighbors allowing the swarm to follow the leader. The paper ends with numeric simulation for performance evaluation of the proposed control method.

  1. Mobility Model for Self-Organizing and Cooperative MSN and MANET Systems

    Directory of Open Access Journals (Sweden)

    Andrzej Sikora

    2012-03-01

    Full Text Available Self-organization mechanisms are used for building scalable systems consisting of a huge number of subsystems. In computer networks, self-organizing is especially important in ad hoc networking. A self-organizing ad hoc network is a collection of wireless devices that collaborate with each other to form a network system that adapts to achieve a goal or goals. Such network is often built from mobile devices that may spontaneously create a network and dynamically adapted to changes in an unknown environment. Mobility pattern is a critical element that influences the performance characteristics of mobile sensor networks (MSN and mobile ad hoc networks (MANET. In this paper, we survey main directions to mobility modeling. We describe a novel algorithm for calculating mobility patterns for mobile devices that is based on a cluster formation and an artificial potential function. Finally, we present the simulation results of its application to a rescue mission planning.

  2. MACHINE LEARNING FOR THE SELF-ORGANIZATION OF DISTRIBUTED SYSTEMS IN ECONOMIC APPLICATIONS

    Directory of Open Access Journals (Sweden)

    Jerzy Balicki

    2017-03-01

    Full Text Available In this paper, an application of machine learning to the problem of self-organization of distributed systems has been discussed with regard to economic applications, with particular emphasis on supervised neural network learning to predict stock investments and some ratings of companies. In addition, genetic programming can play an important role in the preparation and testing of several financial information systems. For this reason, machine learning applications have been discussed because some software applications can be automatically constructed by genetic programming. To obtain a competitive advantage, machine learning can be used for the management of self-organizing cloud computing systems performing calculations for business. Also the use of selected economic self-organizing distributed systems has been described, including some testing methods of predicting borrower reliability. Finally, some conclusions and directions for further research have been proposed.

  3. Self-organization in Complex Systems The Past, Present, and Future of Synergetics : International Symposium

    CERN Document Server

    Pelster, Axel

    2016-01-01

    This proceedings volume contains talks and poster presentations from the International Symposium "Self-Organization in Complex Systems: The Past, Present, and Future of Synergetics", which took place at Hanse-Wissenschaftskolleg, an Institute of Advanced Studies, in Delmenhorst, Germany, during the period November 13 - 16, 2012. The Symposium was organized in honour of Hermann Haken, who celebrated his 85th birthday in 2012. With his fundamental theory of Synergetics he had laid the mathematical-physical basis for describing and analyzing self-organization processes in a diversity of fields of research. The quest for common and universal principles of self-organization in complex systems was clearly covered by the wide range of interdisciplinary topics reported during the Symposium. These extended from complexity in classical systems and quantum systems over self-organisation in neuroscience even to the physics of finance. Moreover, by combining a historical view with a present status report the Symposium con...

  4. Derivations and comparisons of three groups of self-organization theories for magnetohydrodynamic plasmas

    International Nuclear Information System (INIS)

    Kondoh, Yoshiomi; Sato, Tetsuya.

    1994-01-01

    A theoretical investigation on self-organization theories of dissipative MHD plasmas is presented to derive three groups of theories that lead to the same relaxed state of ∇xB=λB, in order to find more essential physical picture embedded in self-organization phenomena due to nonlinear and dissipative processes. Comparisons among all of the theories treated and derived here suggest that a theory standing upon spectrum spreadings and selective dissipations of eigenmodes for the dissipative operator-∇xηj and leading to self-organized relaxed states of ∇xηj=αB/2 with the minimum dissipation rate is the most agreeable to various results obtained by experiments and by 3-D MHD simulations reported so far. (author)

  5. Secure eHealth-Care Service on Self-Organizing Software Platform

    Directory of Open Access Journals (Sweden)

    Im Y. Jung

    2014-01-01

    Full Text Available There are several applications connected to IT health devices on the self-organizing software platform (SoSp that allow patients or elderly users to be cared for remotely by their family doctors under normal circumstances or during emergencies. An evaluation of the SoSp applied through PAAR watch/self-organizing software platform router was conducted targeting a simple user interface for aging users, without the existence of extrasettings based on patient movement. On the other hand, like normal medical records, the access to, and transmission of, health information via PAAR watch/self-organizing software platform requires privacy protection. This paper proposes a security framework for health information management of the SoSp. The proposed framework was designed to ensure easy detection of identification information for typical users. In addition, it provides powerful protection of the user’s health information.

  6. Origin and evolution of the self-organizing cytoskeleton in the network of eukaryotic organelles.

    Science.gov (United States)

    Jékely, Gáspár

    2014-09-02

    The eukaryotic cytoskeleton evolved from prokaryotic cytomotive filaments. Prokaryotic filament systems show bewildering structural and dynamic complexity and, in many aspects, prefigure the self-organizing properties of the eukaryotic cytoskeleton. Here, the dynamic properties of the prokaryotic and eukaryotic cytoskeleton are compared, and how these relate to function and evolution of organellar networks is discussed. The evolution of new aspects of filament dynamics in eukaryotes, including severing and branching, and the advent of molecular motors converted the eukaryotic cytoskeleton into a self-organizing "active gel," the dynamics of which can only be described with computational models. Advances in modeling and comparative genomics hold promise of a better understanding of the evolution of the self-organizing cytoskeleton in early eukaryotes, and its role in the evolution of novel eukaryotic functions, such as amoeboid motility, mitosis, and ciliary swimming. Copyright © 2014 Cold Spring Harbor Laboratory Press; all rights reserved.

  7. On the self-organizing process of large scale shear flows

    Energy Technology Data Exchange (ETDEWEB)

    Newton, Andrew P. L. [Department of Applied Maths, University of Sheffield, Sheffield, Yorkshire S3 7RH (United Kingdom); Kim, Eun-jin [School of Mathematics and Statistics, University of Sheffield, Sheffield, Yorkshire S3 7RH (United Kingdom); Liu, Han-Li [High Altitude Observatory, National Centre for Atmospheric Research, P. O. BOX 3000, Boulder, Colorado 80303-3000 (United States)

    2013-09-15

    Self organization is invoked as a paradigm to explore the processes governing the evolution of shear flows. By examining the probability density function (PDF) of the local flow gradient (shear), we show that shear flows reach a quasi-equilibrium state as its growth of shear is balanced by shear relaxation. Specifically, the PDFs of the local shear are calculated numerically and analytically in reduced 1D and 0D models, where the PDFs are shown to converge to a bimodal distribution in the case of finite correlated temporal forcing. This bimodal PDF is then shown to be reproduced in nonlinear simulation of 2D hydrodynamic turbulence. Furthermore, the bimodal PDF is demonstrated to result from a self-organizing shear flow with linear profile. Similar bimodal structure and linear profile of the shear flow are observed in gulf stream, suggesting self-organization.

  8. Photophysical properties of novel Porphyrin-Flavin Dyads

    International Nuclear Information System (INIS)

    Stark, S.

    2001-10-01

    Photosynthesis belongs to the fundamentals of life on earth, therefore it is an important matter in natural sciences. The basic principle of photosynthesis is the transformation of solar light into chemical energy. The starting steps of photosynthesis are light-induced energy- and electron-transfer-steps with singular efficiency. One attempt to enlighten the molecular processes involved is to synthesize simpler model systems with similar properties. Important research goals are the dependencies of light-induced processes on distance and orientation of donor and acceptor. A second aim next to the clarification of the molecular conditions of photosynthesis is to create molecular light-driven machines. The most simple so-called biomimetic model system consists of an electron-donor connected to an electron-acceptor via a spacer-group. This simplest form is also referred to as dyad. Beyond dyads far more complicated compounds have been introduced consisting of several donors and/or acceptors, so-called triads, tetrads, pentads etc. Usually porphyrin serves as electron-donor. Next to chinones several other electron-acceptors are used, e.g. anthracene, pyromellitimide and fullerene. Artificial photosynthetic centers are often more stable and/or the excited states are easier to detect compared to the natural photosynthetic center. The photophysical characteristics of four dyads are reported in this work. The dyads consist of porphyrin (either free-base or zinc-metallated) and flavin, connected by different spacers. These dyads reveal photo-induced electron transfer from porphyrin to flavin and energy-transfer in the reversed direction with different efficiencies. The object of the study is the dependency of these processes on the structural features. The spacer of the dyads 1a-1c is an aromatic bridge which leads to well defined donor-acceptor distances. Because of this structure conjugation through the spacer is increased, whereas the absorption in the visible and near UV

  9. Tunable photophysical processes of porphyrin macrocycles on the surface of ZnO nanoparticles

    KAUST Repository

    Parida, Manas R.

    2015-01-23

    We investigated the impact of the molecular structure of cationic porphyrins on the degree of electrostatic interactions with zinc oxide nanoparticles (ZnO NPs) using steady-state and time-resolved fluorescence and transient absorption spectroscopy. Our results demonstrate that the number of cationic pyridinium units has a crucial impact on the photophysics of the porphyrin macrocycle. Fluorescence enhancement, relative to initial free porphyrin fluorescence, was found to be tuned from 3.4 to 1.3 times higher by reducing the number of cationic substituents on the porphyrin from 4 to 2. The resulting enhancement of the intensity of the fluorescence is attributed to the decrease in the intramolecular charge transfer (ICT) character between the porphyrin cavity and its meso substituent. The novel findings reported in this work provide an understanding of the key variables involved in nanoassembly, paving the way toward optimizing the interfacial chemistry of porphyrin-ZnO NP assembly for photodynamic therapy and energy conversion.

  10. Substituted group and side chain effects for the porphyrin and zinc(II)–porphyrin derivatives: A DFT and TD-DFT study

    International Nuclear Information System (INIS)

    Tai, Chin-Kuen; Chuang, Wen-Hua; Wang, Bo-Cheng

    2013-01-01

    The DFT/B3LYP/LANL2DZ and TD-DFT calculations have been performed to generate the optimized structures, electronic and photo-physical properties for the porphyrin and zinc(II)–porphyrin (metalloporphyrin) derivatives. The substituted group and side chain effects for these derivatives are discussed in this study. According to the calculation results, the side chain moiety extends the π-delocalization length from the porphyrin core to the side chain moiety. The substituted group with a stronger electron-donating ability increases the energy level of highest occupied molecular orbital (E HOMO ). The side chain moiety with a lower resonance energy decreases E HOMO , the energy level of the lowest unoccupied molecular orbital (E LUMO ), and the energy gap (E g ) between HOMO and LUMO in the porphyrin and zinc(II)–porphyrin derivatives. The natural bonding orbital (NBO) analysis determines the possible electron transfer mechanism from the electron-donating to -withdrawing groups (the side chain moiety) in these porphyrin derivatives. The projected density of state (PDOS) analysis shows that the electron-donating group affects the electron density distribution in both HOMO and LUMO, and the side chain moiety influence the electron density distribution in LUMO. The calculated photo-physical properties (absorption wavelengths and the related oscillator strength, f) in dichloromethane environment for porphyrin and zinc(II)–porphyrin derivatives have been simulated by using the TD-DFT method within the Polarizable Continuum Model (PCM). The present of both of the substituted group and the side chain moiety in these derivatives results in a red shift and broadening of the range of the absorption peaks of the Q/Soret band as compared to porphin. -- Highlights: • Side chain moiety extends the π-delocalization for the porphyrins. • Substituted group increases the energy of highest occupied molecular orbital. • Side chain moiety influences the Q/Soret band of

  11. A strategy for tissue self-organization that is robust to cellular heterogeneity and plasticity.

    Science.gov (United States)

    Cerchiari, Alec E; Garbe, James C; Jee, Noel Y; Todhunter, Michael E; Broaders, Kyle E; Peehl, Donna M; Desai, Tejal A; LaBarge, Mark A; Thomson, Matthew; Gartner, Zev J

    2015-02-17

    Developing tissues contain motile populations of cells that can self-organize into spatially ordered tissues based on differences in their interfacial surface energies. However, it is unclear how self-organization by this mechanism remains robust when interfacial energies become heterogeneous in either time or space. The ducts and acini of the human mammary gland are prototypical heterogeneous and dynamic tissues comprising two concentrically arranged cell types. To investigate the consequences of cellular heterogeneity and plasticity on cell positioning in the mammary gland, we reconstituted its self-organization from aggregates of primary cells in vitro. We find that self-organization is dominated by the interfacial energy of the tissue-ECM boundary, rather than by differential homo- and heterotypic energies of cell-cell interaction. Surprisingly, interactions with the tissue-ECM boundary are binary, in that only one cell type interacts appreciably with the boundary. Using mathematical modeling and cell-type-specific knockdown of key regulators of cell-cell cohesion, we show that this strategy of self-organization is robust to severe perturbations affecting cell-cell contact formation. We also find that this mechanism of self-organization is conserved in the human prostate. Therefore, a binary interfacial interaction with the tissue boundary provides a flexible and generalizable strategy for forming and maintaining the structure of two-component tissues that exhibit abundant heterogeneity and plasticity. Our model also predicts that mutations affecting binary cell-ECM interactions are catastrophic and could contribute to loss of tissue architecture in diseases such as breast cancer.

  12. Self-organized complex space charge configurations at the origin of flicker noise

    International Nuclear Information System (INIS)

    Popescu, S.; Lozneanu, E.; Sanduloviciu, M.

    2003-01-01

    Based on experimental results obtained from a plasma diode we explain the fluctuations of the voltage supported by a non-linear gaseous conductor by the dynamical behavior of spatiotemporal patterns, in the form of moving double layers, formed after self-organization. Such phenomena appear when the system is subjected to an external constraint that creates and maintains a local gradient of electron kinetic energy. The described phenomenology suggests a plausible explanation for the appearance of flicker noise also in other physical systems, as for example semiconductors and, implicitly, offers a new model for the so-called self-organized criticality concept

  13. Self-organization leads to supraoptimal performance in public transportation systems.

    Science.gov (United States)

    Gershenson, Carlos

    2011-01-01

    The performance of public transportation systems affects a large part of the population. Current theory assumes that passengers are served optimally when vehicles arrive at stations with regular intervals. In this paper, it is shown that self-organization can improve the performance of public transportation systems beyond the theoretical optimum by responding adaptively to local conditions. This is possible because of a "slower-is-faster" effect, where passengers wait more time at stations but total travel times are reduced. The proposed self-organizing method uses "antipheromones" to regulate headways, which are inspired by the stigmergy (communication via environment) of some ant colonies.

  14. Relation between the Hurst Exponent and the Efficiency of Self-organization of a Deformable System

    Science.gov (United States)

    Alfyorova, E. A.; Lychagin, D. V.

    2018-04-01

    We have established the degree of self-organization of a system under plastic deformation at different scale levels. Using fractal analysis, we have determined the Hurst exponent and correlation lengths in the region of formation of a corrugated (wrinkled) structure in [111] nickel single crystals under compression. This has made it possible to single out two (micro-and meso-) levels of self-organization in the deformable system. A qualitative relation between the values of the Hurst exponent and the stages of the stress-strain curve has been established.

  15. When Self-Organization intersects with Urban Planning: Two Cases from Helsinki

    DEFF Research Database (Denmark)

    Horelli, Liisa; Saad-Sulonen, Joanna; Wallin, Sirkku

    2015-01-01

    Participation as self-organization has emerged as a new form of citizen activism, often supported by digital technology. A comparative qualitative analysis of two case studies in Helsinki indicates that the self-organization of citizens expands the practice of urban planning. Together, they enable...... the mobilization of different groups around issues related to urban space. The consequences have become visible in temporary uses of places, event making and community development through bottom-up cultures. However, the lacking links to decision-making constrains new solutions and creative actions....

  16. Morphological self-organizing feature map neural network with applications to automatic target recognition

    Science.gov (United States)

    Zhang, Shijun; Jing, Zhongliang; Li, Jianxun

    2005-01-01

    The rotation invariant feature of the target is obtained using the multi-direction feature extraction property of the steerable filter. Combining the morphological operation top-hat transform with the self-organizing feature map neural network, the adaptive topological region is selected. Using the erosion operation, the topological region shrinkage is achieved. The steerable filter based morphological self-organizing feature map neural network is applied to automatic target recognition of binary standard patterns and real-world infrared sequence images. Compared with Hamming network and morphological shared-weight networks respectively, the higher recognition correct rate, robust adaptability, quick training, and better generalization of the proposed method are achieved.

  17. Investigation of self-organized quantum dots in InGaN alloys for photovoltaic devices

    Energy Technology Data Exchange (ETDEWEB)

    Yuan, Jinshe; Wang, Mingyue [Chongqing Normal Univ. (China). Dept. of Physics

    2008-07-01

    The self-organized quantum dots in InGaN alloys grown by metal organic chemical vapor deposition for photovoltaic devices were investigated using photoluminescence spectra, x-ray diffraction and atomic force microscopy measurements. The AFM view of the alloy shows the island-like microstructure appearing to be composed of granular-crystalline in nanometer scale. By analysis of the PL, it has been found that the narrow 493nm emission peak with 490nm and 487nm shoulder peaks was originated from InGaN self-organized quantum dots, which provide a candidate for realizing high efficiencies photovoltaic devices. (orig.)

  18. Students' use of social software in self-organized learning environment

    DEFF Research Database (Denmark)

    Mathiasen, Helle; Dalsgaard, Christian

    2006-01-01

    The paper will argue that new possibilities of digital media, especially social software, have a potential regarding development of self-organized learning environments and facilitating self-governed activities. Based on a sociological perspective, the paper will clarify the concepts of informal...... and formal learning used in this paper. It is argued that formal and informal conditions of learning can supplement each other within an educational setting. A formal setting of project work forms the basis of informal, selfgoverned activities of students. The paper will argue that social software tools can...... support students' self-governed activities and their development of self-organized learning environments....

  19. Physics of far-from-equilibrium systems and self-organization

    International Nuclear Information System (INIS)

    Nicolis, G.

    1993-01-01

    The status of self-organization phenomena from the stand point of the physical sciences are analyzed. Non linear dynamics and the presence of constraints maintaining the system far from equilibrium are shown to be the basic mechanism involved in the emergence of these phenomena. Some particularly representative experiments are first presented: thermal conversion, chemical reactions (Benard problem), biological systems, and their explanation through order, disorder, non-linearity, irreversibility, stability, bifurcation, symmetry breaking, etc., concepts. Then it is shown how the self-organization paradigm allows to model problems outside the traditional realm of the physical sciences. 29 figs., 27 refs

  20. From self-organization to emergence: Aesthetic implications of shifting ideas of organization

    Science.gov (United States)

    Hayles, N. Katherine

    1996-06-01

    From 1945-95, a shift took place within cybernetics from a paradigm emphasizing self-organization to one emphasizing emergence. Central in bringing about this shift was the spread of the microcomputer. With its greatly enhanced processing speed and memory capabilities, the microcomputer made simulations possible that could not have been done before. The microcomputer has also been instrumental in effecting a similar change within literary texts. To exemplify the aesthetic implications of the shift from self-organization to emergence, the chapter discusses Vladmir Nabokov's Pale Fire and Milorad Pavić's Dictionary of the Khazars: A Lexicon Novel in 100,000 Words.

  1. Local Electric Field Effects on Rhodium-Porphyrin and NHC-Gold Catalysts

    Science.gov (United States)

    2015-01-05

    AFRL-OSR-VA-TR-2015-0023 (NII) - Local Electric Field Effects on Rhodium -Porphyrin and NHC-Gold Catalysts MATTHEW KANAN LELAND STANFORD JUNIOR UNIV...Effects on Rhodium -Porphyrin and NHC-Gold Catalysts Principal Investigator: Matthew W. Kanan Project Publications: 1. “An Electric Field–Induced Change...Stanford University Grant/Contract Title The full title of the funded effort. (NII)-Local Electric Field Effects on Rhodium -Porphyrin and NHC-Gold

  2. Visible light photocatalytic disinfection of E. coli with TiO{sub 2}–graphene nanocomposite sensitized with tetrakis(4-carboxyphenyl)porphyrin

    Energy Technology Data Exchange (ETDEWEB)

    Rahimi, Rahmatollah, E-mail: rahimi_rah@iust.ac.ir [Department of Chemistry, Iran University of Science and Technology, Tehran 16846-13114 (Iran, Islamic Republic of); Zargari, Solmaz [Department of Chemistry, Iran University of Science and Technology, Tehran 16846-13114 (Iran, Islamic Republic of); Yousefi, Azam [School of Chemical Engineering, Iran University of Science and Technology, Tehran 16846-13114 (Iran, Islamic Republic of); Yaghoubi Berijani, Marzieh; Ghaffarinejad, Ali [Department of Chemistry, Iran University of Science and Technology, Tehran 16846-13114 (Iran, Islamic Republic of); Morsali, Ali [Department of Chemistry, Faculty of Sciences, Tarbiat Modares University, Tehran 14115-175 (Iran, Islamic Republic of)

    2015-11-15

    Graphical abstract: TiO{sub 2}–graphene nanocomposites with different content of graphene were synthesized via a facile one-step solvothermal method. Photoelectrochemical responses of prepared photocatalysts were measured to determine the optimum content of graphene in TG nanocomposites. The results show that the TG nanocomposite with 3% of graphene has the highest photoactivity. This compound was sensitized with tetrakis(4-carboxyphenyl)porphyrin (TGP). The prepared photocatalysts were used for photocatalytic disinfection of E. coli. The results showed that the photocatalytic disinfection of the TG nanocomposite was increased after sensitization with porphyrin. The enhanced photocatalytic performance could be attributed to the synergistic effect between TiO{sub 2}, graphene and porphyrin sensitizer in the TGP photocatalyst. - Highlights: • TiO{sub 2}–graphene nanocomposites (TG) were synthesized with different content of graphene. • The TG nanocomposite with different content of graphene was sensitized with porphyrin (TGP). • The disinfection of E. coli using TGP was investigated in the visible light. • Porphyrin sensitizer increases effectively the photocatalytic disinfection efficiency of TGP. - Abstract: The present research deals with the development of a new heterogeneous photocatalysis system for disinfection of bacteria from wastewater by using TiO{sub 2}–graphene (TG) nanocomposite sensitized with tetrakis(4-carboxyphenyl)porphyrin (TCPP). The disinfection of wastewater using this photocatalyst is not reported in the literature yet. All the synthesized materials were thoroughly characterized by Raman, XRD, DRS, BET, and SEM analysis. The optimum content of graphene in the TiO{sub 2}–graphene nanocomposite was determined by photocurrent responses of prepared photocatalysts. Subsequently, the photocurrent measurements demonstrate that the TiO{sub 2}–graphene nanocomposite with 3% graphene content has higher photoactivity. Furthermore

  3. Boronated porphyrins in NCT: Results with a new potent tumor localizer

    International Nuclear Information System (INIS)

    Kahl, S.B.; Koo, M.S.; Laster, B.H.; Fairchild, R.G.

    1988-01-01

    Several chemical methods are available for the solubilization of boronated porphyrins. We have previously reported the tumor localization of nido carboranyl porphyrins in which the icosahedral carborane cages have been opened to give B 9 C 2 anions. One of these species has shown tumor boron levels of nearly 50 μg B/g when delivered by week-long subcutaneous infusions. We report here recent in vivo experiments with a new, highly water-soluble porphyrin based on the hematoporphyrin-type of compound in which aqueous solubility is achieved using the two propionic acid side chains of the ''natural'' porphyrin frame. 7 refs

  4. Peripherally Metalated Porphyrins with Applications in Catalysis, Molecular Electronics and Biomedicine.

    Science.gov (United States)

    Longevial, Jean-François; Clément, Sébastien; Wytko, Jennifer A; Ruppert, Romain; Weiss, Jean; Richeter, Sébastien

    2018-04-24

    Porphyrins are conjugated, stable chromophores with a central core that binds a variety of metal ions and an easily functionalized peripheral framework. By combining the catalytic, electronic or cytotoxic properties of selected transition metal complexes with the binding and electronic properties of porphyrins, enhanced characteristics of the ensemble are generated. This review article focuses on porphyrins bearing one or more peripheral transition metal complexes and discusses their potential applications in catalysis or biomedicine. Modulation of the electronic properties and intramolecular communication through coordination bond linkages in bis-porphyrin scaffolds is also presented. © 2018 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  5. Self-organizing expert communities in educational projects

    Directory of Open Access Journals (Sweden)

    Gennadiy P. Vinogradov

    2018-01-01

    Full Text Available Purpose of the study. The purpose of the study is the problem of forming a knowledge model of a specialist with higher education that is a part of an educational project. Its relevance is related to the need for an adequate response to strengthening the scientific and technological progress dynamics and the transition to the information interactions economy in the current conditions of the higher education system.Materials and methods. The information base of the research includes the laws on education of the Russian Federation, educational standards of higher professional education, scientists’ publications on the issues under investigation. The study used the following methods: system analysis, active systems theory, reflexive control theory, and modeling.Results. The research analyzes the consequences of Russia’s entry into the Bologna Convention on education. It shows that this event caused the problem of efficiency and quality of training specialists, as well as the problem of integrating higher education institutions into a new social and economic system related to their adaptation to market relations. According to the principle of institutional autonomy, solution of these problems is the responsibility of universities. The paper shows that the way to solve these problems is to transfer universities to a design and technological type of administration. The most promising form of education project management is the model of information interaction within the framework of active self-developing network expert environments. The elementary part of such an environment is an expert professional, who owns modern telecommunication technologies and Internet means. Integration in the natural intelligence network structure forms a collective strategic subject, which is a tool of a knowledge and action synergy in the interaction process. The paper describes the developed structure of the active self-developing network expert environment and two

  6. Enhanced solar energy collection in porphyrin based photoconversion schemes

    Science.gov (United States)

    Gust, D.; Moore, T. A.

    1983-02-01

    A series of carotenoporphyrins whose conformations varied from folded (with the carotenoid (PI)-electron system stacked over that of the porphyrin) to extended (with the two chromophores widely separated) were studied. The conformations were determined by high resolution proton NMR studies. Laser flash spectroscopy revealed triplet energy transfer from porphyrin to carotenoid. Three distinct pathways for such transfer were discovered: (1) static through space transfer which does not require significant intramolecular motions; (2) dynamic through space transfer mediated by intramolecular motions; (3) triplet transfer mediated by the chemical bonds joining the chromophores. pulse radiolysis and fluorescence quenching of these ethers and related carotenoporphyrins revealed electron transfer in the systems. It is demonstrated that the natural carotenoid functions of photoprotection from singlet oxygen damage and antenna function can be mimicked by synthetic molecules, and therefore, in principle can be applied to artificial solar energy conversion systems.

  7. Facile Preparation of Hybrid Zinc Porphyrin Dendrimer Using Coordination Complex

    Energy Technology Data Exchange (ETDEWEB)

    Choi, Go-Eun; Shin, Eun Ju [Sunchon National University, Suncheon (Korea, Republic of)

    2016-03-15

    Porphyrins and metalloporphyrins have been investigated extensively due to their important role in natural photosynthesis, strong absorption in visible region, good light-harvesting properties, unique photophysical and electrochemical properties, and the development of simple synthetic routes for various derivatives. Dendrimers have globular structure with branches of repeating units and wide diversity of the architecture because their size, shape, and functionalities can be tailored. Numerous dendrimers have been designed and synthesized for various applications ranging from catalyst to drug delivery. Both pyridine dendrons Py-PD and Py-AD were successfully coordinated at axial position on central zinc metal cation in zinc porphyrin dendrimers ZnP-AD, ZnP-AD2, or ZnP-AD4. Therefore, it was proven that the formation of axial coordination complex between metal-centered dendrimer and ligand-containing dendron provides another facile method for the preparation of new hybrid dendrimer.

  8. Synthesis and Spectroscopic Characterization of Two Tetrasubstituted Cationic Porphyrin Derivatives

    Directory of Open Access Journals (Sweden)

    Newton M. Barbosa Neto

    2011-07-01

    Full Text Available An imidazolium tetrasubstituted cationic porphyrin derivative (the free base and its Zn(II complex with five-membered heterocyclic groups in the meso-positions were synthesized using microwave irradiation, and the compounds obtained characterized by 1H-NMR and mass spectrometry. We observed that under microwave irradiation the yield is similar to when the synthesis is performed under conventional heating, however, the time required to prepare the porphyrins decreases enormously. In order to investigate the electronic state of these compounds, we employed UV-Vis and fluorescence spectroscopy combined with quantum chemical calculations. The results reveal the presence, in both compounds, of a large number of electronic states involving the association between the Soret and a blue-shifted band. The Soret band in both compounds also shows a considerable solvent dependence. As for emission, these compounds present low quantum yield at room temperature and no solvent influence on the fluorescence spectra was observed.

  9. Emulating porphyrins with a rippled multivacancy graphene system

    Science.gov (United States)

    Mombrú, Dominique; Faccio, Ricardo; Mombrú, Alvaro W.

    2018-04-01

    The interaction between a complex porphyrin-like system formed by an iron atom and multivacant graphene layer and O2, CO and CO2 molecules is studied, using Density Functional Theory (DFT) calculations. The multivacancy graphene system used for this study, consists in the removal of a 1,4-dimethybenzene-like moiety, in a 6 × 6 supercell. This removal and the structural optimization subsequently performed, yield to a biaxial vacancy, where the location of an iron atom embedded in it, lead to a system with resemblance to iron-porphyrin systems. This similar structure could be used to form complexes where gas molecules are allowed to interact with these iron-octavacant graphene systems. The study focuses on the structure of the system and the net magnetic moment for different gas molecules: O2, CO2 and CO. Rippling in the vacant graphene is enhanced through this interaction.

  10. Supramolecular Ferric Porphyrins as Cyanide Receptors in Aqueous Solution

    Science.gov (United States)

    2011-01-01

    All fundamental data about binding of the cyanide to a supramolecular complex composed of a per-O-methylated β-cyclodextrin dimer having an imidazole linker (Im3CD) and an anionic ferric porphyrin (Fe(III)TPPS) indicate that the Fe(III)TPPS/Im3CD complex is much better as an cyanide receptor in vivo than hydroxocobalamin, whose cyanide binding ability is lowered by its strong binding to serum proteins in the blood. PMID:24900285

  11. Photoinduced electron transfer within porphyrin-cyclodextrin conjugates

    Czech Academy of Sciences Publication Activity Database

    Lang, Kamil; Král, V.; Kapusta, P.; Kubát, Pavel; Vašek, P.

    2002-01-01

    Roč. 43, - (2002), s. 4919-4922 ISSN 0040-4039 R&D Projects: GA ČR GA203/99/1163; GA ČR GA203/01/0634; GA ČR GA203/02/1483 Institutional research plan: CEZ:AV0Z4032918 Keywords : porphyrin-cyclodextrin * chiral aggregate * quenching Subject RIV: CA - Inorganic Chemistry Impact factor: 2.357, year: 2002

  12. Chemistry of supramolecular systems containing porphyrins and metal complexes

    OpenAIRE

    Araki, Koiti; Toma, Henrique Eisi

    2002-01-01

    Supramolecular chemistry is expected to keep a high developing pace in the next years, giving support to the advancement of molecular devices and nanotechnology. In this sense, porphyrins and their analogues should play a significant role as a consequence of their catalytic, electrocatalytic, photochemical and photoelectrochemical properties. In this review we focused on our own strategy based on coordination chemistry for the design and build-up of supermolecules and supramolecular structure...

  13. Porphyrin-based Nanostructure-Dependent Photodynamic and Photothermal Therapies

    Science.gov (United States)

    Jin, Cheng S.

    This thesis presents the investigation of nanostructure-dependent phototherapy. We reviewed the liposomal structures for delivery of photosensitizers, and introduced a novel class of phototransducing liposomes called "porphysomes". Porphysomes are self-assembled from high packing density of pyropheophorbide alpha-conjugated phospholipids, resulting in extreme self-quenching of porphyrin fluorescence and comparable optical absorption to gold nanoparticles for high photothermal efficiency. We demonstrated this self-assembly of porphyrin-lipid conjugates converts a singlet oxygen generating mechanism (photodynamic therapy PDT activity) of porphyrin to photothermal mechanism (photothermal therapy PTT activity). The efficacy of porphysome-enhanced PTT was then evaluated on two pre-clinical animal models. We validated porphysome-enabled focal PTT to treat orthotopic prostate cancer using MRI-guided focal laser placement to closely mimic the current clinic procedure. Furthermore, porphysome-enabled fluorescence-guided transbronchial PTT of lung cancer was demonstrated in rabbit orthotopic lung cancer models, which led to the development of an ultra-minimally invasive therapy for early-stage peripheral lung cancer. On the other hand, the nanostructure-mediated conversion of PDT to PTT can be switched back by nanoparticle dissociation. By incorporating folate-conjugated phospholipids into the formulation, porphysomes were internalized into cells rapidly via folate receptor-mediated endocytosis and resulted in efficient disruption of nanostructures, which turned back on the photodynamic activity of densely packed porphyrins, making a closed loop of conversion between PDT and PTT. The multimodal imaging and therapeutic features of porphysome make it ideal for future personalized cancer treatments.

  14. Self-organized criticality in a sheared granular stick-slip system

    International Nuclear Information System (INIS)

    Dalton, Fergal; Corcoran, David

    2001-01-01

    We present an analysis of results obtained from a mechanical apparatus consisting of an annular plate shearing over a granular bed. The size, energy dissipation, and duration of slips in the system exhibit power-law distributions and a 1/f 2 power spectrum, in accordance with self-organized criticality. We draw similarities with earthquakes

  15. Self-organizing dynamic stability of far-from-equilibrium biological systems

    Science.gov (United States)

    Ivanitskii, G. R.

    2017-10-01

    One indication of the stability of a living system is the variation of the system’s characteristic time scales. Underlying the stability mechanism are the structural hierarchy and self-organization of systems, factors that give rise to a positive (accelerating) feedback and a negative (braking) feedback. Information processing in the brain cortex plays a special role in highly organized living organisms.

  16. Intestinal epithelial organoids fuse to form self-organizing tubes in floating collagen gels

    NARCIS (Netherlands)

    Sachs, Norman; Tsukamoto, Yoshiyuki; Kujala, Pekka; Peters, Peter J; Clevers, Hans

    2017-01-01

    Multiple recent examples highlight how stem cells can self-organize in vitro to establish organoids that closely resemble their in vivo counterparts. Single Lgr5+ mouse intestinal stem cells can be cultured under defined conditions forming ever-expanding epithelial organoids that retain cell

  17. Understanding Complexity and Self-Organization in a Defense Program Management Organization (Experimental Design)

    Science.gov (United States)

    2016-03-18

    initiatives such as the Packard Commission study, Goldwater-Nichols Legislation, and more recently, the Better Buying Power initiative. While the DoD...potential communications pathways in an organizational structure) Self-Organizing Network Behavior The nodes in the network are specific individuals... behavior pattern impacts of changing predetermined independent variables  Phase 4: Refined hypothesis testing to examine how decision and

  18. Towards a Knowledge Building Community: From Guided to Self-Organized Inquiry

    Directory of Open Access Journals (Sweden)

    Stefano Cacciamani

    2010-11-01

    Full Text Available Over four academic years a design experiment was conducted involving four online university courses with the goal of shifting from Guided to Self-Organized Inquiry to foster Knowledge Building communities in the classroom. Quantitative analyses focused on notes contributed to collective knowledge spaces, as well as reading and building-on notes of others. All team members, including teachers, contributed at high levels. Students tended to produce more notes in the guided-inquiry approach but read more and demonstrated more even distribution of work as part of self-organized inquiry. Qualitative data focused on strategies students reported as new to their school experience. Strategies fell into three categories common to both guided and self-organizing inquiry: elaborating course content for depth of understanding, collaboration in an online environment, and metacognition, with greater reflection on idea development. Distinctive aspects of self-organized inquiry, according to student reports, included going beyond given information, linking new understandings and personal experiences, attention to the collective works of the community, and learning from instructor’s strategies.

  19. Investigation on Self-Organization Processes in DC Generators by Synergetic Modeling

    Directory of Open Access Journals (Sweden)

    Ion Voncilă

    2014-09-01

    Full Text Available In this paper is suggested a new mathematical model, based on which it can be justified the self-excitation DC generators, either shunt or series excitation, by self-organization phenomena that appear to overcome threshold values (self-excitation in these generators is an avalanche process, a positive feedback, considered at first glance uncontrollable.

  20. Investigation on Self-Organization Processes in DC Generators by Synergetic Modeling

    OpenAIRE

    Ion Voncilă; Mădălin Costin; Răzvan Buhosu

    2014-01-01

    In this paper is suggested a new mathematical model, based on which it can be justified the self-excitation DC generators, either shunt or series excitation, by self-organization phenomena that appear to overcome threshold values (self-excitation in these generators is an avalanche process, a positive feedback, considered at first glance uncontrollable).

  1. A Graphical, Self-Organizing Approach to Classifying Electronic Meeting Output.

    Science.gov (United States)

    Orwig, Richard E.; Chen, Hsinchun; Nunamaker, Jay F., Jr.

    1997-01-01

    Describes research using an artificial intelligence approach in the application of a Kohonen Self-Organizing Map (SOM) to the problem of classification of electronic brainstorming output and an evaluation of the results. The graphical representation of textual data produced by the Kohonen SOM suggests many opportunities for improving information…

  2. Architecture for self-organizing, co-operative and robust building automation systems

    NARCIS (Netherlands)

    Bernier, F.; Ploennigs, J.; Pesch, D.; Lesecq, S.; Basten, T.; Boubekeur, M.; Denteneer, T.J.J.; Oltmanns, F.; Lehmann, M.; Mai, Linh Tuan; Mc Gibney, A.; Rea, S.; Pacull, F.; Guyon-Gardeux, C.; Ducreux, L.F.; Thior, S.; Hendriks, M.; Verriet, J.H.; Fedor, S.

    2013-01-01

    This paper provides an overview of the architecture for self-organizing, co-operative and robust Building Automation Systems (BAS) proposed by the EC funded FP7 SCUBA1 project. We describe the current situation in monitoring and control systems and outline the typical stakeholders involved in the

  3. Architecture for self-organizing, co-operative and robust Building Automation Systems

    NARCIS (Netherlands)

    Bernier, F.; Ploennigs, J.; Pesch, D.; Lesecq, S.; Basten, T.; Boubekeur, M.; Denteneer, D.; Oltmanns, F.; Bonnard, F.; Lehmann, M.; Mai, T.L.; McGibney, A.; Rea, S.; Pacull, F.; Guyon-Gardeux, C.; Ducreux, L.F.; Thior, S.; Hendriks, M.; Verriet, J.; Fedor, S.

    2013-01-01

    This paper provides an overview of the architecture for self-organizing, co-operative and robust Building Automation Systems (BAS) proposed by the EC funded FP7 SCUBA1 project. We describe the current situation in monitoring and control systems and outline the typical stakeholders involved in the

  4. Nonlinear dynamics analysis of a self-organizing recurrent neural network: chaos waning.

    Science.gov (United States)

    Eser, Jürgen; Zheng, Pengsheng; Triesch, Jochen

    2014-01-01

    Self-organization is thought to play an important role in structuring nervous systems. It frequently arises as a consequence of plasticity mechanisms in neural networks: connectivity determines network dynamics which in turn feed back on network structure through various forms of plasticity. Recently, self-organizing recurrent neural network models (SORNs) have been shown to learn non-trivial structure in their inputs and to reproduce the experimentally observed statistics and fluctuations of synaptic connection strengths in cortex and hippocampus. However, the dynamics in these networks and how they change with network evolution are still poorly understood. Here we investigate the degree of chaos in SORNs by studying how the networks' self-organization changes their response to small perturbations. We study the effect of perturbations to the excitatory-to-excitatory weight matrix on connection strengths and on unit activities. We find that the network dynamics, characterized by an estimate of the maximum Lyapunov exponent, becomes less chaotic during its self-organization, developing into a regime where only few perturbations become amplified. We also find that due to the mixing of discrete and (quasi-)continuous variables in SORNs, small perturbations to the synaptic weights may become amplified only after a substantial delay, a phenomenon we propose to call deferred chaos.

  5. Speculation about Behavior, Brain Damage, and Self-Organization: The Other Way to Herd a Cat

    Science.gov (United States)

    Colangelo, Annette; Holden, John G.; Buchanan, Lori; Van Orden, Guy C.

    2004-01-01

    This article contrasts aphasic patients' performance of word naming and lexical decision with that of intact college-aged readers. We discuss this contrast within a framework of self-organization; word recognition by aphasic patients is destabilized relative to intact performance. Less stable performance shows itself as an increase in the…

  6. Pattern formation and self-organization in a simple precipitation system

    NARCIS (Netherlands)

    Volford, Andras; Izsak, F.; Ripzam, Matyas; Lagzi, Istvan

    Various types of pattern formation and self-organization phenomena can be observed in biological, chemical, and geochemical systems due to the interaction of reaction with diffusion. The appearance of static precipitation patterns was reported first by Liesegang in 1896. Traveling waves and

  7. Self-Organization Observed in Numerical Simulations of a Hard-Core Diffuse Z Pinch

    International Nuclear Information System (INIS)

    Makhin, V; Siemon, R E; Bauer, B S; Esaulov, A; Lindemuth, I R; Ryutov, D D; Sheehey, P T; Sotnikov, V I

    2005-04-01

    The evolution of an unstable plasma profile into a stable profile, which we term self-organization, appears to be a robust process. Although it was not termed self organization, the same effect has been noted in past simulations with the same code. The result has been made easier to discern by the introduction of z-averaged profiles. A recent report of PIC simulations in the hard-core z-pinch configuration also shows self-organization. Figures 3 and 4 in Reference 21 show how pressure profiles in a low-β PIC simulation relax from unstable to stable. The non-linear evolution of the interchange motion has been studied under controlled initial conditions that result in exponential growth of a mode with a prescribed axial wavelength. An interesting feature of such growth is an abrupt transition from coherent to incoherent motion, after which the z-averaged pressure, current, and temperature profiles become quasi stationary. According to our understanding of MAGO experiments, the observed plasma behavior is consistent with the expectation of self-organization, but the diagnostics are not sufficiently detailed thus far to make a definite conclusion. The results of this simulations reported in this paper add motivation to planned experiments on an inverse pinch at UNR

  8. Self-organization processes in field-invasion team sports : implications for leadership.

    Science.gov (United States)

    Passos, Pedro; Araújo, Duarte; Davids, Keith

    2013-01-01

    In nature, the interactions between agents in a complex system (fish schools; colonies of ants) are governed by information that is locally created. Each agent self-organizes (adjusts) its behaviour, not through a central command centre, but based on variables that emerge from the interactions with other system agents in the neighbourhood. Self-organization has been proposed as a mechanism to explain the tendencies for individual performers to interact with each other in field-invasion sports teams, displaying functional co-adaptive behaviours, without the need for central control. The relevance of self-organization as a mechanism that explains pattern-forming dynamics within attacker-defender interactions in field-invasion sports has been sustained in the literature. Nonetheless, other levels of interpersonal coordination, such as intra-team interactions, still raise important questions, particularly with reference to the role of leadership or match strategies that have been prescribed in advance by a coach. The existence of key properties of complex systems, such as system degeneracy, nonlinearity or contextual dependency, suggests that self-organization is a functional mechanism to explain the emergence of interpersonal coordination tendencies within intra-team interactions. In this opinion article we propose how leadership may act as a key constraint on the emergent, self-organizational tendencies of performers in field-invasion sports.

  9. Expanding Evolutionary Theory beyond Darwinism with Elaborating, Self-Organizing, and Fractionating Complex Evolutionary Systems

    Science.gov (United States)

    Fichter, Lynn S.; Pyle, E. J.; Whitmeyer, S. J.

    2010-01-01

    Earth systems increase in complexity, diversity, and interconnectedness with time, driven by tectonic/solar energy that keeps the systems far from equilibrium. The evolution of Earth systems is facilitated by three evolutionary mechanisms: "elaboration," "fractionation," and "self-organization," that share…

  10. Effect of prediction on the self-organization of pedestrian counter flow

    International Nuclear Information System (INIS)

    Wang Ziyang; Zhao Hui; Ma Jian; Qin Yong; Jia Limin

    2012-01-01

    Pedestrians may predict the behavior of others and then adjust their movement accordingly to avoid potential conflicts in advance. Motivated by this fact, we propose a predictive control theory-based pedestrian counter flow model, which describes the predictive mechanism underlying pedestrian self-organization phenomena. In this model, a pedestrian will make in-advance-avoid behavior based on the estimation of future moving gain within a given predictive length to reduce potential conflicts. The future gain in the present model is affected by three factors, i.e. the predictive length, the smooth degree of entrance and the influential area of coming pedestrians. Simulation results of the model show that increasing predictive length has a remarkable effect on reducing conflicts, improving pedestrian velocity, smoothing pedestrian movement and stabilizing the self-organized lanes. When enlarging the influential area of coming pedestrians, pedestrians tend to aggregate to the formed self-organized lanes, which makes the lanes wider and the lane number reduced. Interestingly, moderate enlargement (of the influential area) will reduce conflicts significantly, while excessive enlargement will lead to an increase in conflicts. We also discuss the predictive effect toward the smooth degree of entrance. When there are some formed self-organized lanes in the system, the effect is significant, and it will make the lanes more regular and stable, while when the existing lanes are unstable, the effect has little impact on the system. (paper)

  11. Processible conducting nanoscale cylinders due to self-organized polyaniline supra molecules

    NARCIS (Netherlands)

    Kosonen, H; Valkama, S; Ruokolainen, J; Knaapila, M; Torkkeli, M; Serimaa, R; Monkman, AP; ten Brinke, G; Ikkala, O

    2003-01-01

    Polyaniline sulphonates contain hydrogen bonding acceptor sites, which allow construction of supramolecules and self-organized structures. Here we have characterized the phase behavior of complexes of polyaniline, camphorsulphomc acid (CSA) and 4-hexylresorcinol (tires), PANI(CSA)(x)(Hres)(y), using

  12. Classifying galaxy spectra at 0.5 < z < 1 with self-organizing maps

    Science.gov (United States)

    Rahmani, S.; Teimoorinia, H.; Barmby, P.

    2018-05-01

    The spectrum of a galaxy contains information about its physical properties. Classifying spectra using templates helps elucidate the nature of a galaxy's energy sources. In this paper, we investigate the use of self-organizing maps in classifying galaxy spectra against templates. We trained semi-supervised self-organizing map networks using a set of templates covering the wavelength range from far ultraviolet to near infrared. The trained networks were used to classify the spectra of a sample of 142 galaxies with 0.5 K-means clustering, a supervised neural network, and chi-squared minimization. Spectra corresponding to quiescent galaxies were more likely to be classified similarly by all methods while starburst spectra showed more variability. Compared to classification using chi-squared minimization or the supervised neural network, the galaxies classed together by the self-organizing map had more similar spectra. The class ordering provided by the one-dimensional self-organizing maps corresponds to an ordering in physical properties, a potentially important feature for the exploration of large datasets.

  13. Substrate morphology induced self-organization into carbon nanotube arrays, ropes, and agglomerates.

    Science.gov (United States)

    Huang, Jia-Qi; Zhang, Qiang; Xu, Guang-Hui; Qian, Wei-Zhong; Wei, Fei

    2008-10-29

    In this paper, hydrophobic carbon nanotube (CNT) arrays, ropes, and agglomerates were synthesized through self-organization on quartz substrates with different micro-structures under the same growth condition. On a flat substrate, a uniform woven structure was formed which resulted in a synchronous growth into an array. When the substrate with 10 µm round concaves distributed on the surface was adopted, the woven structure was sporadic and a CNT cluster was grown in the concave. With further growth, CNT ropes were self-organized. Subsequently, when the substrate consisting of irregular ∼100 nm gaps was used, the initial woven structure was high density, thus resulting in the formation of CNT agglomerates. Study results showed that CNT arrays grown on the flat substrate were of the highest purity and had a contact angle of 153.8 ± 0.9°. Thus, the self-organization behavior among CNTs was in situ modulated by different substrate morphology without further treatments. This provides us with an additional understanding of the self-organization of CNTs during growth, as well as strategies for the controllable synthesis of CNTs with fixed properties.

  14. Substrate morphology induced self-organization into carbon nanotube arrays, ropes, and agglomerates

    International Nuclear Information System (INIS)

    Huang Jiaqi; Zhang Qiang; Xu Guanghui; Qian Weizhong; Wei Fei

    2008-01-01

    In this paper, hydrophobic carbon nanotube (CNT) arrays, ropes, and agglomerates were synthesized through self-organization on quartz substrates with different micro-structures under the same growth condition. On a flat substrate, a uniform woven structure was formed which resulted in a synchronous growth into an array. When the substrate with 10 μm round concaves distributed on the surface was adopted, the woven structure was sporadic and a CNT cluster was grown in the concave. With further growth, CNT ropes were self-organized. Subsequently, when the substrate consisting of irregular ∼100 nm gaps was used, the initial woven structure was high density, thus resulting in the formation of CNT agglomerates. Study results showed that CNT arrays grown on the flat substrate were of the highest purity and had a contact angle of 153.8 ± 0.9 0 . Thus, the self-organization behavior among CNTs was in situ modulated by different substrate morphology without further treatments. This provides us with an additional understanding of the self-organization of CNTs during growth, as well as strategies for the controllable synthesis of CNTs with fixed properties.

  15. Topology assisted self-organization of colloidal nanoparticles: application to 2D large-scale nanomastering

    Directory of Open Access Journals (Sweden)

    Hind Kadiri

    2014-08-01

    Full Text Available Our aim was to elaborate a novel method for fully controllable large-scale nanopatterning. We investigated the influence of the surface topology, i.e., a pre-pattern of hydrogen silsesquioxane (HSQ posts, on the self-organization of polystyrene beads (PS dispersed over a large surface. Depending on the post size and spacing, long-range ordering of self-organized polystyrene beads is observed wherein guide posts were used leading to single crystal structure. Topology assisted self-organization has proved to be one of the solutions to obtain large-scale ordering. Besides post size and spacing, the colloidal concentration and the nature of solvent were found to have a significant effect on the self-organization of the PS beads. Scanning electron microscope and associated Fourier transform analysis were used to characterize the morphology of the ordered surfaces. Finally, the production of silicon molds is demonstrated by using the beads as a template for dry etching.

  16. Self-organized control in cooperative robots using a pattern formation principle

    DEFF Research Database (Denmark)

    Starke, Jens; Ellsaesser, Carmen; Fukuda, Toshio

    2011-01-01

    problems where robot teams have to serve manufacturing targets such that an objective function is optimized. Feasibility of the self-organized solutions can be guaranteed even for unpredictable situations like sudden changes in the demands or breakdowns of robots. As example an uncrewed space mission...

  17. Self-Organization and the Self-Assembling Process in Tissue Engineering

    Science.gov (United States)

    Eswaramoorthy, Rajalakshmanan; Hadidi, Pasha; Hu, Jerry C.

    2015-01-01

    In recent years, the tissue engineering paradigm has shifted to include a new and growing subfield of scaffoldless techniques which generate self-organizing and self-assembling tissues. This review aims to provide a cogent description of this relatively new research area, with special emphasis on applications toward clinical use and research models. Particular emphasis is placed on providing clear definitions of self-organization and the self-assembling process, as delineated from other scaffoldless techniques in tissue engineering and regenerative medicine. Significantly, during formation, self-organizing and self-assembling tissues display biological processes similar to those that occur in vivo. These help lead to the recapitulation of native tissue morphological structure and organization. Notably, functional properties of these tissues also approach native tissue values; some of these engineered tissues are already in clinical trials. This review aims to provide a cohesive summary of work in this field, and to highlight the potential of self-organization and the self-assembling process to provide cogent solutions to current intractable problems in tissue engineering. PMID:23701238

  18. Self-organized spectrum chunk selection algorithm for Local Area LTE-Advanced

    DEFF Research Database (Denmark)

    Kumar, Sanjay; Wang, Yuanye; Marchetti, Nicola

    2010-01-01

    This paper presents a self organized spectrum chunk selection algorithm in order to minimize the mutual intercell interference among Home Node Bs (HeNBs), aiming to improve the system throughput performance compared to the existing frequency reuse one scheme. The proposed algorithm is useful...

  19. Self-organization and natural selection in the evolution of complex despotic societies

    NARCIS (Netherlands)

    Hemelrijk, C.K.

    2002-01-01

    Differences between related species are usually explained as separate adaptations produced by individual selection. I discuss in this paper how related species, which differ in many respects, may evolve by a combination of individual selection, self-organization, and group-selection, requiring an

  20. Self-organization theories and environmental management: The case of South Moresby, Canada

    Science.gov (United States)

    Grzybowski, Alex G. S.; Slocombe, D. Scott

    1988-07-01

    This article presents a new approach to the analysis and management of large-scale societal problems with complex ecological, economic, and social dimensions. The approach is based on the theory of self-organizing systems—complex, open, far-from-equilibrium systems with nonlinear dynamics. A brief overview and comparison of different self-organization theories (synergetics, self-organization theory, hypercycles, and autopoiesis) is presented in order to isolate the key characteristics of such systems. The approach is used to develop an analysis of the landuse controversy in the South Moresby area of the Queen Charlotte Islands, British Columbia, Canada. Critical variables are identified for each subsystem and classified by spatial and temporal scale, and discussed in terms of information content and internal/external origin. Eradication of sea otters, introduction of black-tailed deer, impacts of large-scale clearcut logging, sustainability of the coastal forest industry, and changing relations between native peoples and governments are discussed in detail to illustrate the system dynamics of the South Moresby “sociobiophysical” system. Finally, implications of the self-organizing sociobiophysical system view for regional analysis and management are identified.

  1. Self-Organization Scheme for Balanced Routing in Large-Scale Multi-Hop Networks

    DEFF Research Database (Denmark)

    Badiu, Mihai Alin; Saad, David; Coon, Justin P.

    2018-01-01

    We propose a self-organization scheme for cost-effective and load-balanced routing in multi-hop networks. To avoid overloading nodes that provide favourable routing conditions, we assign each node with a cost function that penalizes high loads. Thus, finding routes to sink nodes is formulated...

  2. Actomyosin-based Self-organization of cell internalization during C. elegans gastrulation

    Directory of Open Access Journals (Sweden)

    Pohl Christian

    2012-11-01

    Full Text Available Abstract Background Gastrulation is a key transition in embryogenesis; it requires self-organized cellular coordination, which has to be both robust to allow efficient development and plastic to provide adaptability. Despite the conservation of gastrulation as a key event in Metazoan embryogenesis, the morphogenetic mechanisms of self-organization (how global order or coordination can arise from local interactions are poorly understood. Results We report a modular structure of cell internalization in Caenorhabditis elegans gastrulation that reveals mechanisms of self-organization. Cells that internalize during gastrulation show apical contractile flows, which are correlated with centripetal extensions from surrounding cells. These extensions converge to seal over the internalizing cells in the form of rosettes. This process represents a distinct mode of monolayer remodeling, with gradual extrusion of the internalizing cells and simultaneous tissue closure without an actin purse-string. We further report that this self-organizing module can adapt to severe topological alterations, providing evidence of scalability and plasticity of actomyosin-based patterning. Finally, we show that globally, the surface cell layer undergoes coplanar division to thin out and spread over the internalizing mass, which resembles epiboly. Conclusions The combination of coplanar division-based spreading and recurrent local modules for piecemeal internalization constitutes a system-level solution of gradual volume rearrangement under spatial constraint. Our results suggest that the mode of C. elegans gastrulation can be unified with the general notions of monolayer remodeling and with distinct cellular mechanisms of actomyosin-based morphogenesis.

  3. Implications of behavioral architecture for the evolution of self-organized division of labor

    NARCIS (Netherlands)

    Duarte, A.; Scholtens, E.; Weissing, F. J.

    Division of labor has been studied separately from a proximate self-organization and an ultimate evolutionary perspective. We aim to bring together these two perspectives. So far this has been done by choosing a behavioral mechanism a priori and considering the evolution of the properties of this

  4. Dendronized Metal Nanoparticles-Self-Organizing Building Blocks for the Design of New Functional Materials

    Science.gov (United States)

    2016-04-01

    interparticular spacing..    SAXS  measurements   suggest  that  the  hybrids  organize  in  fcc   cubic  phases  between  room  temperature and ca. 120 to 140°C...between  the  inorganic  cores,  or more  precisely  a  rhombo‐dodecaedral  shape,  in  order  to  pack  efficiently  in  the  fcc   lattice.  This  cubic...identity between the a2D parameter of the cubic sub‐cell  and aH,  measure  on a TEM image showing 2 superimposed hexagonal lattices. Each new layer

  5. New approaches to novel boronated porphyrins for neutron capture therapy

    International Nuclear Information System (INIS)

    Kahl, S.B.

    1986-01-01

    The use of boon compounds in the treatment of human cancer is based on the unique ability of nonradioactive 10 B nuclei to absorb thermal neutrons. The prompt nuclear reactions, which occur in neutron absorption, deliver a dose of nearly 2.8 MeV only in the vicinity of boron-containing cells, since the nuclear garments produced (alpha particles and recoil lithium atoms) travel only 10 to 15 μm. The practical, clinical use of this technique to date has been limited by the authors inability to target boron-containing compounds specifically to tumor cells in amounts sufficient for therapy and in a chemical form that has an acceptable level of toxicity. Porphyrins are one important and large class of compounds that are known to accumulate in practically all tumor systems yet examined. Such site-specific accumulation is not known to be based on any currently identifiable selective transport mechanism and yet is observed for both natural and synthetic porphyrins. Tetraphenylporphine sulfonate (TPPS) has been shown by Fairchild et al. to be an ideal model compound for assessing porphyrin uptake, and suitably boronated tetraphenyl porphine might be expected to behave similarly. This report describes the synthesis, properties, and preliminary biodistribution of such compounds

  6. Antimicrobial activity of new porphyrins of synthetic and natural origin

    Science.gov (United States)

    Gyulkhandanyan, Grigor V.; Ghazaryan, Robert K.; Paronyan, Marina H.; Ulikhanyan, Ghukas I.; Gyulkhandanyan, Aram G.; Sahakyan, Lida A.

    2012-03-01

    Antimicrobial photodynamic inactivation has been successfully used against Gram (+) microorganisms, but most of the photosensitizers (PSs) on Gram (-) bacteria acts weakly. PSs are the natural or synthetic origin dyes, mainly porphyrins. We have synthesized more than 100 new cationic porphyrins and metalloporphyrins with different functional groups (hydroxyethyl, butyl, allyl, methallyl) and metals (cobalt, iron, copper, zinc, silver and other); from the nettle have also been purified pheophytin (a+b) and pheophytin (a) and have synthesized their Ag-and Zn-metalloporphyrins. It was found that in the dark (cytotoxic) mode, the most highly efficiency against microorganisms showed Agmetalloporphyrins of both types of porphyrins (synthetic and natural). Metalloporphyrin of natural origin Ag-pheophytin (a + b) is a strong antibacterial agent and causes 100% death as the Gram (+) microorganisms (St. aureus and MRSA) and the Gram (-) microorganisms (E.coli and Salmonella). It is established that for the destruction of Gram (+) and Gram (-) microorganisms in photodynamic mode cationic water-soluble synthetic metalloporphyrins, especially Zn-TBut4PyP, many times more effective than pheophytins. In vivo conditions on mice established that the best therapeutic activity against various strains of the microorganism St. aureus has the synthetic metalloporphyrin Ag-TBut4PyP. It is significantly more efficient than known drug "Chlorophyllipt" (2.5-3 times) and leads the survival rate of animals up to 50-60%.

  7. Porphyrin conjugated SiC/SiOx nanowires for X-ray-excited photodynamic therapy

    Science.gov (United States)

    Rossi, F.; Bedogni, E.; Bigi, F.; Rimoldi, T.; Cristofolini, L.; Pinelli, S.; Alinovi, R.; Negri, M.; Dhanabalan, S. C.; Attolini, G.; Fabbri, F.; Goldoni, M.; Mutti, A.; Benecchi, G.; Ghetti, C.; Iannotta, S.; Salviati, G.

    2015-01-01

    The development of innovative nanosystems opens new perspectives for multidisciplinary applications at the frontier between materials science and nanomedicine. Here we present a novel hybrid nanosystem based on cytocompatible inorganic SiC/SiOx core/shell nanowires conjugated via click-chemistry procedures with an organic photosensitizer, a tetracarboxyphenyl porphyrin derivative. We show that this nanosystem is an efficient source of singlet oxygen for cell oxidative stress when irradiated with 6 MV X-Rays at low doses (0.4-2 Gy). The in-vitro clonogenic survival assay on lung adenocarcinoma cells shows that 12 days after irradiation at a dose of 2 Gy, the cell population is reduced by about 75% with respect to control cells. These results demonstrate that our approach is very efficient to enhance radiation therapy effects for cancer treatments.

  8. Small molecule solution-processed bulk heterojunction solar cells with inverted structure using porphyrin donor

    Science.gov (United States)

    Yamamoto, Takaki; Hatano, Junichi; Nakagawa, Takafumi; Yamaguchi, Shigeru; Matsuo, Yutaka

    2013-01-01

    Utilizing tetraethynyl porphyrin derivative (TE-Por) as a small molecule donor material, we fabricated a small molecule solution-processed bulk heterojunction (BHJ) solar cell with inverted structure, which exhibited 1.6% power conversion efficiency (JSC (short-circuit current) = 4.6 mA/cm2, VOC (open-circuit voltage) = 0.90 V, and FF (fill factor) = 0.39) in the device configuration indium tin oxide/TiOx (titanium sub-oxide)/[6,6]-phenyl-C61-butyric acid methyl ester:TE-Por (5:1)/MoOx (molybdenum sub-oxide)/Au under AM1.5 G illumination at 100 mW/cm2. Without encapsulation, the small molecule solution-processed inverted BHJ solar cell also showed remarkable durability to air, where it kept over 73% of its initial power conversion efficiency after storage for 28 days under ambient atmosphere in the dark.

  9. Sustained activity in hierarchical modular neural networks: self-organized criticality and oscillations

    Directory of Open Access Journals (Sweden)

    Sheng-Jun Wang

    2011-06-01

    Full Text Available Cerebral cortical brain networks possess a number of conspicuous features of structure and dynamics. First, these networks have an intricate, non-random organization. They are structured in a hierarchical modular fashion, from large-scale regions of the whole brain, via cortical areas and area subcompartments organized as structural and functional maps to cortical columns, and finally circuits made up of individual neurons. Second, the networks display self-organized sustained activity, which is persistent in the absence of external stimuli. At the systems level, such activity is characterized by complex rhythmical oscillations over a broadband background, while at the cellular level, neuronal discharges have been observed to display avalanches, indicating that cortical networks are at the state of self-organized criticality. We explored the relationship between hierarchical neural network organization and sustained dynamics using large-scale network modeling. It was shown that sparse random networks with balanced excitation and inhibition can sustain neural activity without external stimulation. We find that a hierarchical modular architecture can generate sustained activity better than random networks. Moreover, the system can simultaneously support rhythmical oscillations and self-organized criticality, which are not present in the respective random networks. The underlying mechanism is that each dense module cannot sustain activity on its own, but displays self-organized criticality in the presence of weak perturbations. The hierarchical modular networks provide the coupling among subsystems with self-organized criticality. These results imply that the hierarchical modular architecture of cortical networks plays an important role in shaping the ongoing spontaneous activity of the brain, potentially allowing the system to take advantage of both the sensitivityof critical state and predictability and timing of oscillations for efficient

  10. Symbiotic intelligence: Self-organizing knowledge on distributed networks, driven by human interaction

    Energy Technology Data Exchange (ETDEWEB)

    Johnson, N.; Joslyn, C.; Rocha, L.; Smith, S.; Kantor, M. [Los Alamos National Lab., NM (United States); Rasmussen, S. [Los Alamos National Lab., NM (United States)]|[Santa Fe Inst., NM (United States)

    1998-07-01

    This work addresses how human societies, and other diverse and distributed systems, solve collective challenges that are not approachable from the level of the individual, and how the Internet will change the way societies and organizations view problem solving. The authors apply the ideas developed in self-organizing systems to understand self-organization in informational systems. The simplest explanation as to why animals (for example, ants, wolves, and humans) are organized into societies is that these societies enhance the survival of the individuals which make up the populations. Individuals contribute to, as well as adapt to, these societies because they make life easier in one way or another, even though they may not always understand the process, either individually or collectively. Despite the lack of understanding of the how of the process, society during its existence as a species has changed significantly, from separate, small hunting tribes to a highly technological, globally integrated society. The authors combine this understanding of societal dynamics with self-organization on the Internet (the Net). The unique capability of the Net is that it combines, in a common medium, the entire human-technological system in both breadth and depth: breadth in the integration of heterogeneous systems of machines, information and people; and depth in the detailed capturing of the entire complexity of human use and creation of information. When the full diversity of societal dynamics is combined with the accuracy of communication on the Net, a phase transition is argued to occur in problem solving capability. Through conceptual examples, an experiment of collective decision making on the Net and a simulation showing the effect of noise and loss on collective decision making, the authors argue that the resulting symbiotic structure of humans and the Net will evolve as an alternative problem solving approach for groups, organizations and society. Self-organizing

  11. Self-organization of the critical state in Josephson lattices and granulated superconductors

    International Nuclear Information System (INIS)

    Ginzburg, S.L.

    1994-01-01

    A number of models of a Josephson medium and granulated superconductors are studied. It is shown that an important parameter is the quantity V∼j c a 3 /Φ 0 , where j c is the Josephson-current density, a is the granule size, and Φ 0 is the quantum of flux. In the limit V>>1 the continuum approximation is inapplicable. In this case the Josephson medium is transformed into a system in which pinning is realized on elementary loops that incorporate Josephson junctions. Here, nonlinear properties of these junctions obtain. The equations obtained for the currents of the Josephson lattice are identical to the standard formulation in the problem of self-organized criticality, while in granulated superconductors a problem of self-organized criticality with a different symmetry arises-a problem not of sites, but of loop. From the point of view of the critical state in granulated superconductors the concept of self-organized criticality radically changes the entire customary picture. The usual equations of the critical state describe only the average values of the magnetic field in the hydrodynamic approximation. However, it follows from the concept of self-organized criticality that the critical state has an extremely complicated structure, much more complicated than that which follows from the equation of the critical state. In particular, the fluctuations of various quantities in the critical state are much stronger than the ordinary statistical fluctuations, since there are large-scale fluctuations of the currents and fields, with a power-law (scaling) behavior that extends up to scales of the order of the size of the system, as in a turbulent medium. On the other hand, the basic equations in it reflect all the features of pinning - hysteresis and threshold behavior. Therefore, the self-organization of the critical state of a superconductor is a natural realization of this extremely general problem. 15 refs., 4 figs

  12. HAEM SYNTHASE AND COBALT PORPHYRIN SYNTHASE IN VARIOUS MICRO-ORGANISMS.

    Science.gov (United States)

    PORRA, R J; ROSS, B D

    1965-03-01

    1. The preparation of a crude extract of Clostridium tetanomorphum containing cobalt porphyrin synthase but little haem-synthase activity is described. 2. The properties of cobalt porphyrin synthase in the clostridial extracts is compared with the properties of a haem synthase present in crude extracts of the yeast Torulopsis utilis. 3. Cobalt porphyrin synthase in extracts of C. tetanomorphum inserts Co(2+) ions into the following dicarboxylic porphyrins in descending order of rate of insertion: meso-, deutero- and proto-porphyrins. Esterification renders meso- and deutero-porphyrins inactive as substrates. Neither the tetracarboxylic (coproporphyrin III) nor the octacarboxylic (uroporphyrin III) compounds are converted into cobalt porphyrins by the extract, but the non-enzymic incorporation of Co(2+) ions into these two porphyrins is rapid. These extracts are unable to insert Mn(2+), Zn(2+), Mg(2+) or Cu(2+) ions into mesoporphyrin. 4. Crude extracts of T. utilis readily insert both Co(2+) and Fe(2+) ions into deutero-, meso, and proto-porphyrins. Unlike the extracts of C. tetanomorphum, these preparations catalyse the insertion of Co(2+) ions into deuteroporphyrin more rapidly than into mesoporphyrin. This parallels the formation of haems by the T. utilis extract. 5. Cobalt porphyrin synthase is present in the particulate fraction of the extracts of C. tetanomorphum but requires a heat-stable factor present in the soluble fraction. This soluble factor can be replaced by GSH. 6. Cobalt porphyrin synthase in the clostridial extract is inhibited by iodoacetamide and to a smaller extent by p-chloromercuribenzoate and N-ethylmaleimide. The haem synthases of T. utilis and Micrococcus denitrificans are also inhibited by various thiol reagents.

  13. Efficient sensitization of dye-sensitized solar cells by novel triazine-bridged porphyrin-porphyrin dyads.

    Science.gov (United States)

    Zervaki, Galateia E; Roy, Mahesh S; Panda, Manas K; Angaridis, Panagiotis A; Chrissos, Emmanouel; Sharma, Ganesh D; Coutsolelos, Athanassios G

    2013-09-03

    Two novel porphyrin-porphyrin dyads, the symmetrical Zn[Porph]-Zn[Porph] (2) and unsymmetrical Zn[Porph]-H2[Porph] (4), where Zn[Porph] and H2[Porph] are the metalated and free-base forms of 5-(4-aminophenyl)-10,15,20-triphenylporphyrin, respectively, in which two porphyrin units are covalently bridged by 1,3,5-triazine, have been synthesized via the stepwise amination of cyanuric chloride. The dyads are also functionalized by a terminal carboxylic acid group of a glycine moiety attached to the triazine group. Photophysical measurements of 2 and 4 showed broaden and strengthened absorptions in their visible spectra, while electrochemistry experiments and density functional theory calculations revealed negligible interaction between the two porphyrin units in their ground states but appropriate frontier orbital energy levels for use in dye-sensitized solar cells (DSSCs). The 2- and 4-based solar cells have been fabricated and found to exhibit power conversion efficiencies (PCEs) of 3.61% and 4.46%, respectively (under an illumination intensity of 100 mW/cm(2) with TiO2 films of 10 μm thickness). The higher PCE value of the 4-based DSSC, as revealed by photovoltaic measurements (J-V curves) and incident photon-to-current conversion efficiency (IPCE) spectra of the two cells, is attributed to its enhanced short-circuit current (J(sc)) under illumination, high open-circuit voltage (V(oc)), and fill factor (FF) values. Electrochemical impedance spectra demonstrated shorter electron-transport time (τd), longer electron lifetime (τe), and high charge recombination resistance for the 4-based cell, as well as larger dye loading onto TiO2.

  14. Self-assembled photosynthesis-inspired light harvesting material and solar cells containing the same

    Science.gov (United States)

    Lindsey, Jonathan S [Raleigh, NC; Chinnasamy, Muthiah [Raleigh, NC; Fan, Dazhong [Raleigh, NC

    2009-12-15

    A solar cell is described that comprises: (a) a semiconductor charge separation material; (b) at least one electrode connected to the charge separation material; and (c) a light-harvesting film on the charge separation material, the light-harvesting film comprising non-covalently coupled, self-assembled units of porphyrinic macrocycles. The porphyrinic macrocycles preferably comprise: (i) an intramolecularly coordinated metal; (ii) a first coordinating substituent; and (iii) a second coordinating substituent opposite the first coordinating substituent. The porphyrinic macrocycles can be assembled by repeating intermolecular coordination complexes of the metal, the first coordinating substituent and the second coordinating substituent.

  15. New carbon-carbon linked amphiphilic carboranyl-porphyrins as boron neutron capture agents

    International Nuclear Information System (INIS)

    Vicente, M.G.H.; Wickramasinghe, A.; Shetty, S.J.; Smith, K.M.

    2000-01-01

    Novel amphiphilic carboranyl-porphyrins have been synthesized for Boron Neutron Capture Therapy (BNCT). These compounds have carbon-carbon bonds between the carborane residues and the porphyrin meso-phenyl groups, and contain 28-31% boron by weight . (author)

  16. A Fluorinated Cobalt(III) Porphyrin Complex for Hydroalkoxylation of Alkynes.

    Science.gov (United States)

    Ushimaru, Richiro; Nishimura, Takuho; Iwatsuki, Toshiki; Naka, Hiroshi

    2017-01-01

    A fluorinated cobalt(III) porphyrin complex [Co(TPFPP)NTf 2 ·2C 2 H 5 OH, where TPFPP=5,10,15,20-tetrakis(pentafluorophenyl)porphyrin, Tf=CF 3 SO 2 ] promotes hydroalkoxylation of alkynes to give acetals in good to excellent yields. The acetals can be directly functionalized with nucleophiles in a one-pot procedure.

  17. Ultrafast electron injection at the cationic porphyrin-graphene interface assisted by molecular flattening

    KAUST Repository

    Aly, Shawkat Mohammede; Parida, Manas R.; Alarousu, Erkki; Mohammed, Omar F.

    2014-01-01

    The steady-state and femtosecond (fs) time-resolved data clearly demonstrate that the charge transfer (CT) process at the porphyrin-graphene carboxylate (GC) interfaces can be tuned from zero to very sufficient and ultrafast by changing the electronic structure of the meso unit and the redox properties of the porphyrin cavity. This journal is © the Partner Organisations 2014.

  18. To what extent can charge localization influence electron injection efficiency at graphene-porphyrin interfaces?

    KAUST Repository

    Parida, Manas R.

    2015-04-28

    Controlling the electron transfer process at donor- acceptor interfaces is a research direction that has not yet seen much progress. Here, with careful control of the charge localization on the porphyrin macrocycle using β -Cyclodextrin as an external cage, we are able to improve the electron injection efficiency from cationic porphyrin to graphene carboxylate by 120% . The detailed reaction mechanism is also discussed.

  19. Molecular modeling of cationic porphyrin-anthraquinone hybrids as DNA topoisomerase IIβ inhibitors.

    Science.gov (United States)

    Arba, Muhammad; Ruslin; Ihsan, Sunandar; Tri Wahyudi, Setyanto; Tjahjono, Daryono H

    2017-12-01

    Human DNA Topoisomerase II has been regarded as a promising target in anticancer drug discovery. In the present study, we designed six porphyrin-anthraquinone hybrids bearing pyrazole or pyridine group as meso substituents and evaluated their potentials as DNA Topoisomerase IIβ inhibitor. First, we investigated the binding orientation of porphyrin hybrids into DNA topoisomerase IIβ employing AutoDock 4.2 and then performed 20-ns molecular dynamics simulations to see the dynamic stability of each porphyrin-Topo IIβ complex using Amber 14. We found that the binding of porphyrin hybrids occured through intercalation and groove binding mode in addition interaction with the amino acid residues constituting the active cavity of Topo IIβ. Each porphyrin-Topo IIβ complex was stabilized during 20-ns dynamics simulations. The MM-PBSA free energy calculation shows that the binding affinities of porphyrin hybrids were modified with the number of meso substituent. Interestingly, the affinity of all porphyrin hybrids to Topo IIβ was stronger than that of native ligand (EVP), indicating the potential of the designed porphyrin to be considered in experimental research. Copyright © 2017 Elsevier Ltd. All rights reserved.

  20. Two dimensional self-assembly zinc porphyrin and zinc phthalocyanine heterojunctions with record high power conversion efficiencies

    Science.gov (United States)

    Yu, Junting; Jiang, Zhou; Hao, Yifan; Zhu, Qianhong; Zhao, Mingliang; Jiang, Xue; Zhao, Jijun

    2018-06-01

    Compared to inorganic solar cells, the power conversion efficiencies (PCEs) of organic solar cells are much lower, but they are compensated by many merits such as lower cost, less weight, and tunable structures, making them prospective for further applications. Porphyrin and phthalocyanine are the two most significant materials for organic solar cells due to their strong light-absorbing properties and semiconductor characteristics. However, there is little research on the 2D heterojunction solar cells based on these two materials, meanwhile the PCEs of them are still low. Here we have self-assembled several 2D zinc porphyrins (ZnPors) and performed first-principles simulation to demonstrate their good stability, suitable light harvesting, and high charge carrier mobility. By perfectly matching lattice constants and molecular energy levels between those 2D ZnPors and our previous proposed zinc phthalocyanines (ZnPcs), 11 type-II organic heterojunctions are constructed to further improve their charge separation capability. Those advantages endow 2D ZnPors and ZnPcs appreciable PCEs for solar cells. Among them, the theoretical PCE of 2D ZnPors/ZnPcs heterojunctions achieves as high as 19.84%, which exceeds all reported organic solar cells, and even approaches the PCEs of inorganic solar cells. These results indicate that our 2D ZnPors and 2D ZnPcs are good candidate materials for future organic solar cells.

  1. On the nature and shape of tubulin trails: implications on microtubule self-organization.

    Science.gov (United States)

    Glade, Nicolas

    2012-06-01

    Microtubules, major elements of the cell skeleton are, most of the time, well organized in vivo, but they can also show self-organizing behaviors in time and/or space in purified solutions in vitro. Theoretical studies and models based on the concepts of collective dynamics in complex systems, reaction-diffusion processes and emergent phenomena were proposed to explain some of these behaviors. In the particular case of microtubule spatial self-organization, it has been advanced that microtubules could behave like ants, self-organizing by 'talking to each other' by way of hypothetic (because never observed) concentrated chemical trails of tubulin that are expected to be released by their disassembling ends. Deterministic models based on this idea yielded indeed like-looking spatio-temporal self-organizing behaviors. Nevertheless the question remains of whether microscopic tubulin trails produced by individual or bundles of several microtubules are intense enough to allow microtubule self-organization at a macroscopic level. In the present work, by simulating the diffusion of tubulin in microtubule solutions at the microscopic scale, we measure the shape and intensity of tubulin trails and discuss about the assumption of microtubule self-organization due to the production of chemical trails by disassembling microtubules. We show that the tubulin trails produced by individual microtubules or small microtubule arrays are very weak and not elongated even at very high reactive rates. Although the variations of concentration due to such trails are not significant compared to natural fluctuations of the concentration of tubuline in the chemical environment, the study shows that heterogeneities of biochemical composition can form due to microtubule disassembly. They could become significant when produced by numerous microtubule ends located in the same place. Their possible formation could play a role in certain conditions of reaction. In particular, it gives a mesoscopic

  2. Formation and thermodynamic stability of (polymer + porphyrin) supramolecular structures in aqueous solutions

    International Nuclear Information System (INIS)

    Costa, Viviana C.P. da; Hwang, Barrington J.; Eggen, Spencer E.; Wallace, Megan J.; Annunziata, Onofrio

    2014-01-01

    Highlights: • Thermodynamic stability of a (polymer + porphyrin) supramolecular structure was characterized. • Isothermal titration calorimetry provided two ways to determine reaction enthalpies. • Exothermic (polymer + porphyrin) binding competes with porphyrin self-association. • (Polymer + porphyrin) binding is entropically favored with respect to porphyrin self-association. • Spectral shifts show importance of porphyrin central hydrogens in polymer binding. - Abstract: Optical properties of porphyrins can be tuned through (polymer + porphyrin) (host + guest) binding in solution. This gives rise to the formation of supramolecular structures. In this paper, the formation, thermodynamic stability and spectroscopic properties of (polymer + porphyrin) supramolecular structures and their competition with porphyrin self-association were investigated by both isothermal titration calorimetry (ITC) and absorption spectroscopy. Specifically, reaction enthalpies and equilibrium constants were measured for meso-tetrakis(4-sulfonatophenyl) porphyrin (TPPS) self-association and TPPS binding to the polymer poly(vinylpyrrolidone) (PVP, 40 kg/mol) in aqueous solutions at pH 7 and three different temperatures (12, 25 and 37 °C). ITC, compared to spectroscopic techniques, provides two independent means to determine reaction enthalpies: direct measurements and Van’t Hoff plot. This was used as a criterion to assess that (1) self-association of TPPS is limited to the formation of dimers and (2) TPPS binds to PVP in its monomeric state only. The formation of TPPS dimers and (PVP + TPPS) supramolecular structures are both enthalpically driven. However, (polymer + porphyrin) binding was found to be entropically favored compared to dimerization. Furthermore, the reaction enthalpies of these two processes significantly depend on temperature. This behavior was attributed to hydrophobic interactions. Finally, the limiting absorption spectra of monomeric, dimeric and polymer

  3. Ligations of Gold Atoms with Iron Porphyrin

    DEFF Research Database (Denmark)

    Zhang, Ling; Kepp, Kasper Planeta; Ulstrup, Jens

    Gold is an exotic material with d-electrons deciding electronic mappings andconfigurations of adsorbed molecules. The specific interaction of Au atoms and S-, Ncappedmolecules make gold nanoparticles widely applied in the medicine transport andimmunoassay. Density functional theory demonstrates t...

  4. Excitation energy deactivation funnel in 3-substituted BODIPY-porphyrin conjugate

    International Nuclear Information System (INIS)

    Nguyen, Nguyen Tran; Verbelen, Bram; Leen, Volker; Waelkens, Etienne; Dehaen, Wim; Kruk, Mikalai

    2016-01-01

    BODIPYs absorb in the visible region which is complementary to that of porphyrins and therefore can be suggested as promising antenna groups to improve the light-harvesting potential of porphyrins. A boron-dipyrromethene dye was combined at the 3-position with a Zn-porphyrin to afford a conjugate. The fluorescence of the conjugate was found to originate from the BODIPY moiety independently of the excitation wavelength due to an unique set of energy transfer rates between the BODIPY and Zn-porphyrin moieties. The fluorescence intensity was shown to be tunable over a wide range using the solvent properties. This feature makes the studied BODIPY-porphyrin conjugate a promising compound for the design of new photochromic devices.

  5. Excitation energy deactivation funnel in 3-substituted BODIPY-porphyrin conjugate

    Energy Technology Data Exchange (ETDEWEB)

    Nguyen, Nguyen Tran [Chemistry Department, University of Education, The University of DaNang, Ton Duc Thang 459, Da Nang (Viet Nam); Molecular Design and Synthesis, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven (Belgium); Verbelen, Bram; Leen, Volker [Molecular Design and Synthesis, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven (Belgium); Waelkens, Etienne [Department of Cellular and Molecular Medicine, KU Leuven, Herestraat 49, Box 901, 3000 Leuven (Belgium); Dehaen, Wim, E-mail: wim.dehaen@kuleuven.be [Molecular Design and Synthesis, Department of Chemistry, KU Leuven, Celestijnenlaan 200F, B-3001 Leuven (Belgium); Kruk, Mikalai, E-mail: m.kruk@belstu.by [Belarusian State Technological University, Physics Department, Sverdlov Str., 13a, Minsk 220006 (Belarus)

    2016-11-15

    BODIPYs absorb in the visible region which is complementary to that of porphyrins and therefore can be suggested as promising antenna groups to improve the light-harvesting potential of porphyrins. A boron-dipyrromethene dye was combined at the 3-position with a Zn-porphyrin to afford a conjugate. The fluorescence of the conjugate was found to originate from the BODIPY moiety independently of the excitation wavelength due to an unique set of energy transfer rates between the BODIPY and Zn-porphyrin moieties. The fluorescence intensity was shown to be tunable over a wide range using the solvent properties. This feature makes the studied BODIPY-porphyrin conjugate a promising compound for the design of new photochromic devices.

  6. Soft-Cliff Retreat, Self-Organized Critical Phenomena in the Limit of Predictability?

    Science.gov (United States)

    Paredes, Carlos; Godoy, Clara; Castedo, Ricardo

    2015-03-01

    The coastal erosion along the world's coastlines is a natural process that occurs through the actions of marine and subaerial physico-chemical phenomena, waves, tides, and currents. The development of cliff erosion predictive models is limited due to the complex interactions between environmental processes and material properties over a wide range of temporal and spatial scales. As a result of this erosive action, gravity driven mass movements occur and the coastline moves inland. Like other studied earth natural and synthetically modelled phenomena characterized as self-organized critical (SOC), the recession of the cliff has a seemingly random, sporadic behavior, with a wide range of yearly recession rate values probabilistically distributed by a power-law. Usually, SOC systems are defined by a number of scaling features in the size distribution of its parameters and on its spatial and/or temporal pattern. Particularly, some previous studies of derived parameters from slope movements catalogues, have allowed detecting certain SOC features in this phenomenon, which also shares the recession of cliffs. Due to the complexity of the phenomenon and, as for other natural processes, there is no definitive model of recession of coastal cliffs. In this work, various analysis techniques have been applied to identify SOC features in the distribution and pattern to a particular case: the Holderness shoreline. This coast is a great case study to use when examining coastal processes and the structures associated with them. It is one of World's fastest eroding coastlines (2 m/yr in average, max observed 22 m/yr). Cliffs, ranging from 2 m up to 35 m in height, and made up of glacial tills, mainly compose this coast. It is this soft boulder clay that is being rapidly eroded and where coastline recession measurements have been recorded by the Cliff Erosion Monitoring Program (East Riding of Yorkshire Council, UK). The original database has been filtered by grouping contiguous

  7. Life and Understanding: The Origins of "Understanding" in Self-Organizing Nervous Systems.

    Science.gov (United States)

    Yufik, Yan M; Friston, Karl

    2016-01-01

    This article is motivated by a formulation of biotic self-organization in Friston (2013), where the emergence of "life" in coupled material entities (e.g., macromolecules) was predicated on bounded subsets that maintain a degree of statistical independence from the rest of the network. Boundary elements in such systems constitute a Markov blanket ; separating the internal states of a system from its surrounding states. In this article, we ask whether Markov blankets operate in the nervous system and underlie the development of intelligence, enabling a progression from the ability to sense the environment to the ability to understand it. Markov blankets have been previously hypothesized to form in neuronal networks as a result of phase transitions that cause network subsets to fold into bounded assemblies, or packets (Yufik and Sheridan, 1997; Yufik, 1998a). The ensuing neuronal packets hypothesis builds on the notion of neuronal assemblies (Hebb, 1949, 1980), treating such assemblies as flexible but stable biophysical structures capable of withstanding entropic erosion. In other words, structures that maintain their integrity under changing conditions. In this treatment, neuronal packets give rise to perception of "objects"; i.e., quasi-stable (stimulus bound) feature groupings that are conserved over multiple presentations (e.g., the experience of perceiving "apple" can be interrupted and resumed many times). Monitoring the variations in such groups enables the apprehension of behavior; i.e., attributing to objects the ability to undergo changes without loss of self-identity. Ultimately, "understanding" involves self-directed composition and manipulation of the ensuing "mental models" that are constituted by neuronal packets, whose dynamics capture relationships among objects: that is, dependencies in the behavior of objects under varying conditions. For example, movement is known to involve rotation of population vectors in the motor cortex (Georgopoulos et al

  8. Visible light photocatalytic disinfection of E. coli with TiO2-graphene nanocomposite sensitized with tetrakis(4-carboxyphenyl)porphyrin

    Science.gov (United States)

    Rahimi, Rahmatollah; Zargari, Solmaz; Yousefi, Azam; Yaghoubi Berijani, Marzieh; Ghaffarinejad, Ali; Morsali, Ali

    2015-11-01

    The present research deals with the development of a new heterogeneous photocatalysis system for disinfection of bacteria from wastewater by using TiO2-graphene (TG) nanocomposite sensitized with tetrakis(4-carboxyphenyl)porphyrin (TCPP). The disinfection of wastewater using this photocatalyst is not reported in the literature yet. All the synthesized materials were thoroughly characterized by Raman, XRD, DRS, BET, and SEM analysis. The optimum content of graphene in the TiO2-graphene nanocomposite was determined by photocurrent responses of prepared photocatalysts. Subsequently, the photocurrent measurements demonstrate that the TiO2-graphene nanocomposite with 3% graphene content has higher photoactivity. Furthermore, sensitization of the TiO2-graphene nanocomposite with porphyrin (TGP) is successfully capable to develop a new type of photocatalyst system for disinfection of bacteria with moderate to high yields in visible light irradiation.

  9. Enhancement of biomembrane functions under phase-separated conditions: A self-organized criticality phenomenon?

    International Nuclear Information System (INIS)

    Eze, M.O.; Chela Flores, J.

    1993-12-01

    Self-organized criticality (SOC) is hereby proposed as a possible physical basis for explaining observations in the temperature-dependence of the rates of biological membrane-associated events. The biomembrane undergoes a reversible, cooperative, thermotropic gel-to-liquid crystalline phase transition which is broad, and involves lateral phase separation. The lateral phase separated (rather than the totally gel-, or the totally liquid crystalline-) membrane state has been observed to be the state in which vital membrane functions are facilitated. The membrane in this unique state is viewed, for our purposes here, as a dynamical, extended dissipative system with spatial and temporal degrees of freedom, exhibiting power law behaviour, typical of the self-organized critical state. Experiments are suggested for verifying this hypothesis. (author). 30 refs

  10. Self-organization of high intensity laser pulses propagating in gases

    International Nuclear Information System (INIS)

    Koga, James

    2001-01-01

    In recent years the development of high intensity short pulse lasers has opened up wide fields of science which had previously been difficult to study. Recent experiments of short pulse lasers propagating in air have shown that these laser pulses can propagate over very long distances (up to 12 km) with little or no distortion of the pulse. Here we present a model of this propagation using a modified version of the self-organized criticality model developed for sandpiles by Bak, Tang, and Weisenfeld. The additions to the sandpile model include the formation of plasma which acts as a threshold diffusion term and self-focusing by the nonlinear index of refraction which acts as a continuous inverse diffusion. Results of this simple model indicate that a strongly self-focusing laser pulse shows self-organized critical behavior. (author)

  11. Self-Organized Complexity and Coherent Infomax from the Viewpoint of Jaynes’s Probability Theory

    Directory of Open Access Journals (Sweden)

    William A. Phillips

    2012-01-01

    Full Text Available This paper discusses concepts of self-organized complexity and the theory of Coherent Infomax in the light of Jaynes’s probability theory. Coherent Infomax, shows, in principle, how adaptively self-organized complexity can be preserved and improved by using probabilistic inference that is context-sensitive. It argues that neural systems do this by combining local reliability with flexible, holistic, context-sensitivity. Jaynes argued that the logic of probabilistic inference shows it to be based upon Bayesian and Maximum Entropy methods or special cases of them. He presented his probability theory as the logic of science; here it is considered as the logic of life. It is concluded that the theory of Coherent Infomax specifies a general objective for probabilistic inference, and that contextual interactions in neural systems perform functions required of the scientist within Jaynes’s theory.

  12. Clustering of the Self-Organizing Map based Approach in Induction Machine Rotor Faults Diagnostics

    Directory of Open Access Journals (Sweden)

    Ahmed TOUMI

    2009-12-01

    Full Text Available Self-Organizing Maps (SOM is an excellent method of analyzingmultidimensional data. The SOM based classification is attractive, due to itsunsupervised learning and topology preserving properties. In this paper, theperformance of the self-organizing methods is investigated in induction motorrotor fault detection and severity evaluation. The SOM is based on motor currentsignature analysis (MCSA. The agglomerative hierarchical algorithms using theWard’s method is applied to automatically dividing the map into interestinginterpretable groups of map units that correspond to clusters in the input data. Theresults obtained with this approach make it possible to detect a rotor bar fault justdirectly from the visualization results. The system is also able to estimate theextent of rotor faults.

  13. Temporal, spatial and social patterens of self-organization within street sport

    DEFF Research Database (Denmark)

    Sand, Anne-Lene

    Due to an increased urbanization and digitalization self-organized practices are becoming a central way of doing sports among contemporary young people and adults in urban contexts. The aim of this presentation is to contribute with knowledge about what it means to be self-organized within street...... young people can re-define urban space themselves (Skelton and Valentine 2007). During a multi-sited fieldwork (Marcus 1995) I followed people in Denmark that value to be able to improvise in the way they organize their own street-sport practices through temporal, spatial and social practices. Street...... among young people and adults, in order to redefine and reconstruct future leisure organizations (Rojek 1995) and understand contemporary forms of street sport....

  14. Colour segmentation of multi variants tuberculosis sputum images using self organizing map

    Science.gov (United States)

    Rulaningtyas, Riries; Suksmono, Andriyan B.; Mengko, Tati L. R.; Saptawati, Putri

    2017-05-01

    Lung tuberculosis detection is still identified from Ziehl-Neelsen sputum smear images in low and middle countries. The clinicians decide the grade of this disease by counting manually the amount of tuberculosis bacilli. It is very tedious for clinicians with a lot number of patient and without standardization for sputum staining. The tuberculosis sputum images have multi variant characterizations in colour, because of no standardization in staining. The sputum has more variants colour and they are difficult to be identified. For helping the clinicians, this research examined the Self Organizing Map method for colouring image segmentation in sputum images based on colour clustering. This method has better performance than k-means clustering which also tried in this research. The Self Organizing Map could segment the sputum images with y good result and cluster the colours adaptively.

  15. Self-organization processes and nanocluster formation in crystal lattices by low-energy ion irradiation

    International Nuclear Information System (INIS)

    Tereshko, I.; Abidzina, V.; Tereshko, A.; Glushchenko, V.; Elkin, I.

    2007-01-01

    The goal of this paper is to study self-organization processes that cause nanostructural evolution in nonlinear crystal media. The subjects of the investigation were nonlinear homogeneous and heterogeneous atom chains. The method of computer simulation was used to investigate the interaction between low-energy ions and crystal lattices. It was based on the conception of three-dimensional lattice as a nonlinear atom chain system. We showed that that in homogeneous atom chains critical energy needed for self-organization processes development is less than for nonlinear atom chain with already embedded clusters. The possibility of nanostructure formation was studied by a molecular dynamics method of nonlinear oscillations in atomic oscillator systems of crystal lattices after their low-energy ion irradiation. (authors)

  16. Self-organization principles result in robust control of flexible manufacturing systems

    DEFF Research Database (Denmark)

    Nature shows us in our daily life how robust, flexible and optimal self-organized modular constructions work in complex physical, chemical and biological systems, which successfully adapt to new and unexpected situations. A promising strategy is therefore to use such self-organization and pattern...... problems with several autonomous robots and several targets are considered as model of flexible manufacturing systems. Each manufacturing target has to be served in a given time interval by one and only one robot and the total working costs have to be minimized (or total winnings maximized). A specifically...... constructed dynamical system approach (coupled selection equations) is used which is based on pattern formation principles and results in fault resistant and robust behaviour. An important feature is that this type of control also guarantees feasiblitiy of the assignment solutions. In previous work...

  17. The morphological classification of normal and abnormal red blood cell using Self Organizing Map

    Science.gov (United States)

    Rahmat, R. F.; Wulandari, F. S.; Faza, S.; Muchtar, M. A.; Siregar, I.

    2018-02-01

    Blood is an essential component of living creatures in the vascular space. For possible disease identification, it can be tested through a blood test, one of which can be seen from the form of red blood cells. The normal and abnormal morphology of the red blood cells of a patient is very helpful to doctors in detecting a disease. With the advancement of digital image processing technology can be used to identify normal and abnormal blood cells of a patient. This research used self-organizing map method to classify the normal and abnormal form of red blood cells in the digital image. The use of self-organizing map neural network method can be implemented to classify the normal and abnormal form of red blood cells in the input image with 93,78% accuracy testing.

  18. Self-organization of domain growth in the Ising model with impurities

    DEFF Research Database (Denmark)

    Andersen, Jørgen Vitting; Mouritsen, Ole G.

    1992-01-01

    We have studied avalanchelike rearrangements of domain patterns in the two-dimensional Ising model with static impurities, which is quenched to low temperatures. When breaking the up-down symmetry of the spins by a small applied field, the mere fluctuation of a single spin eventually results...... in a cascade of spin flips at the domain boundaries. We have analyzed the lifetime and size distribution functions for the avalanches and related the results to the general phenomena of self-organized criticality and to recent experiments on cellular magnetic domain patterns in magnetic garnet films. Our...... results suggest that the self-organized state in this system appears to be subcritical, in agreement with a recent theory....

  19. Exploring the patterns and evolution of self-organized urban street networks through modeling

    Science.gov (United States)

    Rui, Yikang; Ban, Yifang; Wang, Jiechen; Haas, Jan

    2013-03-01

    As one of the most important subsystems in cities, urban street networks have recently been well studied by using the approach of complex networks. This paper proposes a growing model for self-organized urban street networks. The model involves a competition among new centers with different values of attraction radius and a local optimal principle of both geometrical and topological factors. We find that with the model growth, the local optimization in the connection process and appropriate probability for the loop construction well reflect the evolution strategy in real-world cities. Moreover, different values of attraction radius in centers competition process lead to morphological change in patterns including urban network, polycentric and monocentric structures. The model succeeds in reproducing a large diversity of road network patterns by varying parameters. The similarity between the properties of our model and empirical results implies that a simple universal growth mechanism exists in self-organized cities.

  20. From self-organization to emergence: Aesthetic implications of shifting ideas of organization

    International Nuclear Information System (INIS)

    Hayles, N.K.

    1996-01-01

    From 1945 endash 95, a shift took place within cybernetics from a paradigm emphasizing self-organization to one emphasizing emergence. Central in bringing about this shift was the spread of the microcomputer. With its greatly enhanced processing speed and memory capabilities, the microcomputer made simulations possible that could not have been done before. The microcomputer has also been instrumental in effecting a similar change within literary texts. To exemplify the aesthetic implications of the shift from self-organization to emergence, the chapter discusses Vladmir Nabokov close-quote s Pale Fire and Milorad Paviacute c close-quote s Dictionary of the Khazars: A Lexicon Novel in 100,000 Words. copyright 1996 American Institute of Physics