WorldWideScience

Sample records for selective key-oriented xml

  1. XML as a format of expression of Object-Oriented Petri Nets

    Directory of Open Access Journals (Sweden)

    Petr Jedlička

    2004-01-01

    Full Text Available A number of object-oriented (OO variants have so far been devised for Petri Nets (PN. However, none of these variants has ever been described using an open, independent format – such as XML. This article suggests several possibilities and advantages of such a description. The outlined XML language definition for the description of object-oriented Petri Nets (OOPN is based on XMI (description of UML object-oriented models, SOX (simple description of general OO systems and PNML (an XML-based language used for the description of structured and modular PN. For OOPN, the XML form of description represents a standard format for storing as well as for transfer between various OOPN-processing (analysis, simulation, ... tools.

  2. An Object-Oriented Approach of Keyword Querying over Fuzzy XML

    Directory of Open Access Journals (Sweden)

    Ting Li

    2016-09-01

    Full Text Available As the fuzzy data management has become one of the main research topics and directions, the question of how to obtain the useful information by means of keyword query from fuzzy XML documents is becoming a subject of an increasing needed investigation. Considering the keyword query methods on crisp XML documents, smallest lowest common ancestor (SLCA semantics is one of the most widely accepted semantics. When users propose the keyword query on fuzzy XML documents with the SLCA semantics, the query results are always incomplate, with low precision, and with no possibilities values returned. Most of keyword query semantics on XML documents only consider query results matching all keywords, yet users may also be interested in the query results matching partial keywords. To overcome these limitations, in this paper, we investigate how to obtain more comprehensive and meaningful results of keyword querying on fuzzy XML documents. We propose a semantics of object-oriented keyword querying on fuzzy XML documents. First, we introduce the concept of "object tree", analyze different types of matching result object trees and find the "minimum result object trees" which contain all keywords and "result object trees" which contain partial keywords. Then an object-oriented keyword query algorithm ROstack is proposed to obtain the root nodes of these matching result object trees, together with their possibilities. At last, experiments are conducted to verify the effectiveness and efficiency of our proposed algorithm.

  3. Towards the XML schema measurement based on mapping between XML and OO domain

    Science.gov (United States)

    Rakić, Gordana; Budimac, Zoran; Heričko, Marjan; Pušnik, Maja

    2017-07-01

    Measuring quality of IT solutions is a priority in software engineering. Although numerous metrics for measuring object-oriented code already exist, measuring quality of UML models or XML Schemas is still developing. One of the research questions in the overall research leaded by ideas described in this paper is whether we can apply already defined object-oriented design metrics on XML schemas based on predefined mappings. In this paper, basic ideas for mentioned mapping are presented. This mapping is prerequisite for setting the future approach to XML schema quality measuring with object-oriented metrics.

  4. Designing XML schemas for bioinformatics.

    Science.gov (United States)

    Bruhn, Russel Elton; Burton, Philip John

    2003-06-01

    Data interchange bioinformatics databases will, in the future, most likely take place using extensible markup language (XML). The document structure will be described by an XML Schema rather than a document type definition (DTD). To ensure flexibility, the XML Schema must incorporate aspects of Object-Oriented Modeling. This impinges on the choice of the data model, which, in turn, is based on the organization of bioinformatics data by biologists. Thus, there is a need for the general bioinformatics community to be aware of the design issues relating to XML Schema. This paper, which is aimed at a general bioinformatics audience, uses examples to describe the differences between a DTD and an XML Schema and indicates how Unified Modeling Language diagrams may be used to incorporate Object-Oriented Modeling in the design of schema.

  5. XML Graphs in Program Analysis

    DEFF Research Database (Denmark)

    Møller, Anders; Schwartzbach, Michael Ignatieff

    2007-01-01

    XML graphs have shown to be a simple and effective formalism for representing sets of XML documents in program analysis. It has evolved through a six year period with variants tailored for a range of applications. We present a unified definition, outline the key properties including validation...... of XML graphs against different XML schema languages, and provide a software package that enables others to make use of these ideas. We also survey four very different applications: XML in Java, Java Servlets and JSP, transformations between XML and non-XML data, and XSLT....

  6. XML Graphs in Program Analysis

    DEFF Research Database (Denmark)

    Møller, Anders; Schwartzbach, Michael I.

    2011-01-01

    of XML graphs against different XML schema languages, and provide a software package that enables others to make use of these ideas. We also survey the use of XML graphs for program analysis with four very different languages: XACT (XML in Java), Java Servlets (Web application programming), XSugar......XML graphs have shown to be a simple and effective formalism for representing sets of XML documents in program analysis. It has evolved through a six year period with variants tailored for a range of applications. We present a unified definition, outline the key properties including validation...

  7. Methods and Technologies of XML Data Modeling for IP Mode Intelligent Measuring and Controlling System

    International Nuclear Information System (INIS)

    Liu, G X; Hong, X B; Liu, J G

    2006-01-01

    This paper presents the IP mode intelligent measuring and controlling system (IMIMCS). Based on object-oriented modeling technology of UML and XML Schema, the innovative methods and technologies of some key problems for XML data modeling in the IMIMCS were especially discussed, including refinement for systemic business by means of use-case diagram of UML, the confirmation of the content of XML data model and logic relationship of the objects of XML Schema with the aid of class diagram of UML, the mapping rules from the UML object model to XML Schema. Finally, the application of the IMIMCS based on XML for a modern greenhouse was presented. The results show that the modeling methods of the measuring and controlling data in the IMIMCS involving the multi-layer structure and many operating systems process strong reliability and flexibility, guarantee uniformity of complex XML documents and meet the requirement of data communication across platform

  8. XML-based analysis interface for particle physics data analysis

    International Nuclear Information System (INIS)

    Hu Jifeng; Lu Xiaorui; Zhang Yangheng

    2011-01-01

    The letter emphasizes on an XML-based interface and its framework for particle physics data analysis. The interface uses a concise XML syntax to describe, in data analysis, the basic tasks: event-selection, kinematic fitting, particle identification, etc. and a basic processing logic: the next step goes on if and only if this step succeeds. The framework can perform an analysis without compiling by loading the XML-interface file, setting p in run-time and running dynamically. An analysis coding in XML instead of C++, easy-to-understood arid use, effectively reduces the work load, and enables users to carry out their analyses quickly. The framework has been developed on the BESⅢ offline software system (BOSS) with the object-oriented C++ programming. These functions, required by the regular tasks and the basic processing logic, are implemented with both standard modules or inherited from the modules in BOSS. The interface and its framework have been tested to perform physics analysis. (authors)

  9. An XML-Enabled Data Mining Query Language XML-DMQL

    NARCIS (Netherlands)

    Feng, L.; Dillon, T.

    2005-01-01

    Inspired by the good work of Han et al. (1996) and Elfeky et al. (2001) on the design of data mining query languages for relational and object-oriented databases, in this paper, we develop an expressive XML-enabled data mining query language by extension of XQuery. We first describe some

  10. A Layered View Model for XML Repositories and XML Data Warehouses

    NARCIS (Netherlands)

    Rajugan, R.; Chang, E.; Dillon, T.; Feng, L.

    The Object-Oriented (OO) conceptual models have the power in describing and modeling real-world data semantics and their inter-relationships in a form that is precise and comprehensible to users. Conversely, XML is fast emerging as the dominant standard for storing, describing and interchanging data

  11. System architecture with XML

    CERN Document Server

    Daum, Berthold

    2002-01-01

    XML is bringing together some fairly disparate groups into a new cultural clash: document developers trying to understand what a transaction is, database analysts getting upset because the relational model doesn''t fit anymore, and web designers having to deal with schemata and rule based transformations. The key to rising above the confusion is to understand the different semantic structures that lie beneath the standards of XML, and how to model the semantics to achieve the goals of the organization. A pure architecture of XML doesn''t exist yet, and it may never exist as the underlying technologies are so diverse. Still, the key to understanding how to build the new web infrastructure for electronic business lies in understanding the landscape of these new standards.If your background is in document processing, this book will show how you can use conceptual modeling to model business scenarios consisting of business objects, relationships, processes, and transactions in a document-centric way. Database des...

  12. Implementasi XML Encryption (XML Enc) Menggunakan Java

    OpenAIRE

    Tenia Wahyuningrum

    2012-01-01

    Seiring dengan semakin luasnya penggunaan XML pada berbagai layanan di internet, yang penyebaran informasinya sebagian besar menggunakan infrastruktur jaringan umum, maka mulai muncul permasalahan mengenai kebutuhan akan keamanan data bagi informasi yang terkandung didalam sebuah dokumen XML. Salah satu caranya adalah dengan menggunakan teknologi XML Enc. Pada makalah ini akan dibahas mengenai cara menggunakan XML Enc menggunakan bahasa pemrograman java, khususnya menyandikan dokumen XML (enk...

  13. Selection of Minerals properties using service oriented architecture

    Directory of Open Access Journals (Sweden)

    Pavel Horovčák

    2009-09-01

    Full Text Available Continually and impressive amplification of internet technologies development and implementation enables the creationof productive, efficient, useful and interactive web applications. The contribution briefly characterizes SOA (Service OrientedArchitecture, WS (Web Service and AJAX (Asynchronous JavaScript And XML technology and illustrates advantages of AJAX and WSintegration on application example for interactive selection of one or more minerals according to actually chosen selection criteria.Contribution presents three created web services (service for creating of web page’s select list based on given database table content,service for selection of one or a group of minerals according to specified criteria from the group of database tables, and service forcorrect depiction of chemical formulas on web page. The application makes use of two web services on the server side and one webservice plus Ajax technology on the client’s side. Application’s client’s side presents integration of these web services in a dynamic wayby means of Ajax technology and at the same time it is a mashup demonstration.

  14. Constructing an XML database of linguistics data

    Directory of Open Access Journals (Sweden)

    J H Kroeze

    2010-04-01

    Full Text Available A language-oriented, multi-dimensional database of the linguistic characteristics of the Hebrew text of the Old Testament can enable researchers to do ad hoc queries. XML is a suitable technology to transform free text into a database. A clause’s word order can be kept intact while other features such as syntactic and semantic functions can be marked as elements or attributes. The elements or attributes from the XML “database” can be accessed and proces sed by a 4th generation programming language, such as Visual Basic. XML is explored as an option to build an exploitable database of linguistic data by representing inherently multi-dimensional data, including syntactic and semantic analyses of free text.

  15. ScotlandsPlaces XML: Bespoke XML or XML Mapping?

    Science.gov (United States)

    Beamer, Ashley; Gillick, Mark

    2010-01-01

    Purpose: The purpose of this paper is to investigate web services (in the form of parameterised URLs), specifically in the context of the ScotlandsPlaces project. This involves cross-domain querying, data retrieval and display via the development of a bespoke XML standard rather than existing XML formats and mapping between them.…

  16. Invisible XML

    NARCIS (Netherlands)

    S. Pemberton (Steven)

    2013-01-01

    htmlabstractWhat if you could see everything as XML? XML has many strengths for data exchange, strengths both inherent in the nature of XML markup and strengths that derive from the ubiquity of tools that can process XML. For authoring, however, other forms are preferred: no one writes CSS or

  17. Design and implementation of an XML based object-oriented detector description database for CMS

    International Nuclear Information System (INIS)

    Liendl, M.

    2003-04-01

    This thesis deals with the development of a detector description database (DDD) for the compact muon solenoid (CMS) experiment at the large hadron collider (LHC) located at the European organization for nuclear research (CERN). DDD is a fundamental part of the CMS offline software with its main applications, simulation and reconstruction. Both are in need of different models of the detector in order to efficiently solve their specific tasks. In the thesis the requirements to a detector description database are analyzed and the chosen solution is described in detail. It comprises the following components: an XML based detector description language, a runtime system that implements an object-oriented transient representation of the detector, and an application programming interface to be used by client applications. One of the main aspects of the development is the design of the DDD components. The starting point is a domain model capturing concisely the characteristics of the problem domain. The domain model is transformed into several implementation models according to the guidelines of the model driven architecture (MDA). Implementation models and appropriate refinements thereof are foundation for adequate implementations. Using the MDA approach, a fully functional prototype was realized in C++ and XML. The prototype was successfully tested through seamless integration into both the simulation and the reconstruction framework of CMS. (author)

  18. XTCE. XML Telemetry and Command Exchange Tutorial

    Science.gov (United States)

    Rice, Kevin; Kizzort, Brad; Simon, Jerry

    2010-01-01

    An XML Telemetry Command Exchange (XTCE) tutoral oriented towards packets or minor frames is shown. The contents include: 1) The Basics; 2) Describing Telemetry; 3) Describing the Telemetry Format; 4) Commanding; 5) Forgotten Elements; 6) Implementing XTCE; and 7) GovSat.

  19. Modeling business objects with XML schema

    CERN Document Server

    Daum, Berthold

    2003-01-01

    XML Schema is the new language standard from the W3C and the new foundation for defining data in Web-based systems. There is a wealth of information available about Schemas but very little understanding of how to use this highly formal specification for creating documents. Grasping the power of Schemas means going back to the basics of documents themselves, and the semantic rules, or grammars, that define them. Written for schema designers, system architects, programmers, and document authors, Modeling Business Objects with XML Schema guides you through understanding Schemas from the basic concepts, type systems, type derivation, inheritance, namespace handling, through advanced concepts in schema design.*Reviews basic XML syntax and the Schema recommendation in detail.*Builds a knowledge base model step by step (about jazz music) that is used throughout the book.*Discusses Schema design in large environments, best practice design patterns, and Schema''s relation to object-oriented concepts.

  20. RelaXML

    DEFF Research Database (Denmark)

    Knudsen, Steffen Ulsø; Pedersen, Torben Bach; Thomsen, Christian

    In modern enterprises, almost all data is stored in relational databases. Additionally, most enterprises increasingly collaborate with other enterprises in long-running read-write workflows, primarily through XML-based data exchange technologies such as web services. However, bidirectional XML data...... exchange is cumbersome and must often be hand-coded, at considerable expense. This paper remedies the situation by proposing RELAXML, an automatic and effective approach to bidirectional XML-based exchange of relational data. RELAXML supports re-use through multiple inheritance, and handles both export...... of relational data to XML documents and (re-)import of XML documents with a large degree of flexibility in terms of the SQL statements and XML document structures supported. Import and export are formally defined so as to avoid semantic problems, and algorithms to implement both are given. A performance study...

  1. RelaXML

    DEFF Research Database (Denmark)

    Knudsen, Steffen Ulsø; Pedersen, Torben Bach; Thomsen, Christian

    exchange is cumbersome and must often be hand-coded, at considerable expense. This paper remedies the situation by proposing RELAXML, an automatic and effective approach to bidirectional XML-based exchange of relational data. RELAXML supports re-use through multiple inheritance, and handles both export...... of relational data to XML documents and (re-)import of XML documents with a large degree of flexibility in terms of the SQL statements and XML document structures supported. Import and export are formally defined so as to avoid semantic problems, and algorithms to implement both are given. A performance study......In modern enterprises, almost all data is stored in relational databases. Additionally, most enterprises increasingly collaborate with other enterprises in long-running read-write workflows, primarily through XML-based data exchange technologies such as web services. However, bidirectional XML data...

  2. XML Files

    Science.gov (United States)

    ... this page: https://medlineplus.gov/xml.html MedlinePlus XML Files To use the sharing features on this page, please enable JavaScript. MedlinePlus produces XML data sets that you are welcome to download ...

  3. phyloXML: XML for evolutionary biology and comparative genomics.

    Science.gov (United States)

    Han, Mira V; Zmasek, Christian M

    2009-10-27

    Evolutionary trees are central to a wide range of biological studies. In many of these studies, tree nodes and branches need to be associated (or annotated) with various attributes. For example, in studies concerned with organismal relationships, tree nodes are associated with taxonomic names, whereas tree branches have lengths and oftentimes support values. Gene trees used in comparative genomics or phylogenomics are usually annotated with taxonomic information, genome-related data, such as gene names and functional annotations, as well as events such as gene duplications, speciations, or exon shufflings, combined with information related to the evolutionary tree itself. The data standards currently used for evolutionary trees have limited capacities to incorporate such annotations of different data types. We developed a XML language, named phyloXML, for describing evolutionary trees, as well as various associated data items. PhyloXML provides elements for commonly used items, such as branch lengths, support values, taxonomic names, and gene names and identifiers. By using "property" elements, phyloXML can be adapted to novel and unforeseen use cases. We also developed various software tools for reading, writing, conversion, and visualization of phyloXML formatted data. PhyloXML is an XML language defined by a complete schema in XSD that allows storing and exchanging the structures of evolutionary trees as well as associated data. More information about phyloXML itself, the XSD schema, as well as tools implementing and supporting phyloXML, is available at http://www.phyloxml.org.

  4. XML Schema Representation of DICOM Structured Reporting.

    Science.gov (United States)

    Lee, K P; Hu, Jingkun

    2003-01-01

    The Digital Imaging and Communications in Medicine (DICOM) Structured Reporting (SR) standard improves the expressiveness, precision, and comparability of documentation about diagnostic images and waveforms. It supports the interchange of clinical reports in which critical features shown by images and waveforms can be denoted unambiguously by the observer, indexed, and retrieved selectively by subsequent reviewers. It is essential to provide access to clinical reports across the health care enterprise by using technologies that facilitate information exchange and processing by computers as well as provide support for robust and semantically rich standards, such as DICOM. This is supported by the current trend in the healthcare industry towards the use of Extensible Markup Language (XML) technologies for storage and exchange of medical information. The objective of the work reported here is to develop XML Schema for representing DICOM SR as XML documents. We briefly describe the document type definition (DTD) for XML and its limitations, followed by XML Schema (the intended replacement for DTD) and its features. A framework for generating XML Schema for representing DICOM SR in XML is presented next. None applicable. A schema instance based on an SR example in the DICOM specification was created and validated against the schema. The schema is being used extensively in producing reports on Philips Medical Systems ultrasound equipment. With the framework described it is feasible to generate XML Schema using the existing DICOM SR specification. It can also be applied to generate XML Schemas for other DICOM information objects.

  5. Plug-and-Play XML

    Science.gov (United States)

    Schweiger, Ralf; Hoelzer, Simon; Altmann, Udo; Rieger, Joerg; Dudeck, Joachim

    2002-01-01

    The application of XML (Extensible Markup Language) is still costly. The authors present an approach to ease the development of XML applications. They have developed a Web-based framework that combines existing XML resources into a comprehensive XML application. The XML framework is model-driven, i.e., the authors primarily design XML document models (XML schema, document type definition), and users can enter, search, and view related XML documents using a Web browser. The XML model itself is flexible and might be composed of existing model standards. The second part of the paper relates the approach of the authors to some problems frequently encountered in the clinical documentation process. PMID:11751802

  6. Securing XML Documents

    Directory of Open Access Journals (Sweden)

    Charles Shoniregun

    2004-11-01

    Full Text Available XML (extensible markup language is becoming the current standard for establishing interoperability on the Web. XML data are self-descriptive and syntax-extensible; this makes it very suitable for representation and exchange of semi-structured data, and allows users to define new elements for their specific applications. As a result, the number of documents incorporating this standard is continuously increasing over the Web. The processing of XML documents may require a traversal of all document structure and therefore, the cost could be very high. A strong demand for a means of efficient and effective XML processing has posed a new challenge for the database world. This paper discusses a fast and efficient indexing technique for XML documents, and introduces the XML graph numbering scheme. It can be used for indexing and securing graph structure of XML documents. This technique provides an efficient method to speed up XML data processing. Furthermore, the paper explores the classification of existing methods impact of query processing, and indexing.

  7. XML Schema Representation of DICOM Structured Reporting

    Science.gov (United States)

    Lee, K. P.; Hu, Jingkun

    2003-01-01

    Objective: The Digital Imaging and Communications in Medicine (DICOM) Structured Reporting (SR) standard improves the expressiveness, precision, and comparability of documentation about diagnostic images and waveforms. It supports the interchange of clinical reports in which critical features shown by images and waveforms can be denoted unambiguously by the observer, indexed, and retrieved selectively by subsequent reviewers. It is essential to provide access to clinical reports across the health care enterprise by using technologies that facilitate information exchange and processing by computers as well as provide support for robust and semantically rich standards, such as DICOM. This is supported by the current trend in the healthcare industry towards the use of Extensible Markup Language (XML) technologies for storage and exchange of medical information. The objective of the work reported here is to develop XML Schema for representing DICOM SR as XML documents. Design: We briefly describe the document type definition (DTD) for XML and its limitations, followed by XML Schema (the intended replacement for DTD) and its features. A framework for generating XML Schema for representing DICOM SR in XML is presented next. Measurements: None applicable. Results: A schema instance based on an SR example in the DICOM specification was created and validated against the schema. The schema is being used extensively in producing reports on Philips Medical Systems ultrasound equipment. Conclusion: With the framework described it is feasible to generate XML Schema using the existing DICOM SR specification. It can also be applied to generate XML Schemas for other DICOM information objects. PMID:12595410

  8. XML under the Hood.

    Science.gov (United States)

    Scharf, David

    2002-01-01

    Discusses XML (extensible markup language), particularly as it relates to libraries. Topics include organizing information; cataloging; metadata; similarities to HTML; organizations dealing with XML; making XML useful; a history of XML; the semantic Web; related technologies; XML at the Library of Congress; and its role in improving the…

  9. Semantically Interoperable XML Data.

    Science.gov (United States)

    Vergara-Niedermayr, Cristobal; Wang, Fusheng; Pan, Tony; Kurc, Tahsin; Saltz, Joel

    2013-09-01

    XML is ubiquitously used as an information exchange platform for web-based applications in healthcare, life sciences, and many other domains. Proliferating XML data are now managed through latest native XML database technologies. XML data sources conforming to common XML schemas could be shared and integrated with syntactic interoperability. Semantic interoperability can be achieved through semantic annotations of data models using common data elements linked to concepts from ontologies. In this paper, we present a framework and software system to support the development of semantic interoperable XML based data sources that can be shared through a Grid infrastructure. We also present our work on supporting semantic validated XML data through semantic annotations for XML Schema, semantic validation and semantic authoring of XML data. We demonstrate the use of the system for a biomedical database of medical image annotations and markups.

  10. Semantically Interoperable XML Data

    Science.gov (United States)

    Vergara-Niedermayr, Cristobal; Wang, Fusheng; Pan, Tony; Kurc, Tahsin; Saltz, Joel

    2013-01-01

    XML is ubiquitously used as an information exchange platform for web-based applications in healthcare, life sciences, and many other domains. Proliferating XML data are now managed through latest native XML database technologies. XML data sources conforming to common XML schemas could be shared and integrated with syntactic interoperability. Semantic interoperability can be achieved through semantic annotations of data models using common data elements linked to concepts from ontologies. In this paper, we present a framework and software system to support the development of semantic interoperable XML based data sources that can be shared through a Grid infrastructure. We also present our work on supporting semantic validated XML data through semantic annotations for XML Schema, semantic validation and semantic authoring of XML data. We demonstrate the use of the system for a biomedical database of medical image annotations and markups. PMID:25298789

  11. Design of the XML Security System for Electronic Commerce Application

    Institute of Scientific and Technical Information of China (English)

    2003-01-01

    The invocation of World Wide Web (www) first triggered mass adoption of the Internet for public access to digital information exchanges across the globe. To get a big market on the Web, a special security infrastructure would need to be put into place transforming the wild-and-woolly Internet into a network with end-to-end protections. XML (extensible Markup Language) is widely accepted as powerful data representation standard for electronic documents, so a security mechanism for XML documents must be provided in the first place to secure electronic commerce over Internet. In this paper the authors design and implement a secure framework that provides XML signature function, XML Element-wise Encryption function, smart card based crypto API library and Public Key Infrastructure (PKI) security functions to achieve confidentiality, integrity, message authentication, and/or signer authentication services for XML documents and existing non-XML documents that are exchanged by Internet for E-commerce application.

  12. Flight Dynamic Model Exchange using XML

    Science.gov (United States)

    Jackson, E. Bruce; Hildreth, Bruce L.

    2002-01-01

    The AIAA Modeling and Simulation Technical Committee has worked for several years to develop a standard by which the information needed to develop physics-based models of aircraft can be specified. The purpose of this standard is to provide a well-defined set of information, definitions, data tables and axis systems so that cooperating organizations can transfer a model from one simulation facility to another with maximum efficiency. This paper proposes using an application of the eXtensible Markup Language (XML) to implement the AIAA simulation standard. The motivation and justification for using a standard such as XML is discussed. Necessary data elements to be supported are outlined. An example of an aerodynamic model as an XML file is given. This example includes definition of independent and dependent variables for function tables, definition of key variables used to define the model, and axis systems used. The final steps necessary for implementation of the standard are presented. Software to take an XML-defined model and import/export it to/from a given simulation facility is discussed, but not demonstrated. That would be the next step in final implementation of standards for physics-based aircraft dynamic models.

  13. Java facilities in processing XML files - JAXB and generating PDF reports

    Directory of Open Access Journals (Sweden)

    Danut-Octavian SIMION

    2008-01-01

    Full Text Available The paper presents the Java programming language facilities in working with XML files using JAXB (The Java Architecture for XML Binding technology and generating PDF reports from XML files using Java objects. The XML file can be an existing one and could contain the data about an entity (Clients for example or it might be the result of a SELECT-SQL statement. JAXB generates JAVA classes through xs rules and a Marshalling, Unmarshalling compiler. The PDF file is build from a XML file and uses XSL-FO formatting file and a Java ResultSet object.

  14. On the effectiveness of XML schema validation for countering XML signature wrapping attacks

    DEFF Research Database (Denmark)

    Jensen, Meiko; Meyer, Christopher; Somorovsky, Juraj

    2011-01-01

    In the context of security of Web Services, the XML Signature Wrapping attack technique has lately received increasing attention. Following a broad range of real-world exploits, general interest in applicable countermeasures rises. However, few approaches for countering these attacks have been...... investigated closely enough to make any claims about their effectiveness. In this paper, we analyze the effectiveness of the specific countermeasure of XML Schema validation in terms of fending Signature Wrapping attacks. We investigate the problems of XML Schema validation for Web Services messages......, and discuss the approach of Schema Hardening, a technique for strengthening XML Schema declarations. We conclude that XML Schema validation with a hardened XML Schema is capable of fending XML Signature Wrapping attacks, but bears some pitfalls and disadvantages as well....

  15. XML in Libraries.

    Science.gov (United States)

    Tennant, Roy, Ed.

    This book presents examples of how libraries are using XML (eXtensible Markup Language) to solve problems, expand services, and improve systems. Part I contains papers on using XML in library catalog records: "Updating MARC Records with XMLMARC" (Kevin S. Clarke, Stanford University) and "Searching and Retrieving XML Records via the…

  16. Overview of the INEX 2008 XML Mining Track

    Science.gov (United States)

    Denoyer, Ludovic; Gallinari, Patrick

    We describe here the XML Mining Track at INEX 2008. This track was launched for exploring two main ideas: first identifying key problems for mining semi-structured documents and new challenges of this emerging field and second studying and assessing the potential of machine learning techniques for dealing with generic Machine Learning (ML) tasks in the structured domain i.e. classification and clustering of semi structured documents. This year, the track focuses on the supervised classification and the unsupervised clustering of XML documents using link information. We consider a corpus of about 100,000 Wikipedia pages with the associated hyperlinks. The participants have developed models using the content information, the internal structure information of the XML documents and also the link information between documents.

  17. XML to XML through XML

    NARCIS (Netherlands)

    Lemmens, W.J.M.; Houben, G.J.P.M.

    2001-01-01

    XML documents are used to exchange data. Data exchange implies the transformation of the original data to a different structure. Often such transformations need to be adapted to some specific situation, like the rendering to non-standard platforms for display or the support of special user

  18. Dual Syntax for XML Languages

    DEFF Research Database (Denmark)

    Brabrand, Claus; Møller, Anders; Schwartzbach, Michael Ignatieff

    2005-01-01

    XML is successful as a machine processable data interchange format, but it is often too verbose for human use. For this reason, many XML languages permit an alternative more legible non-XML syntax. XSLT stylesheets are often used to convert from the XML syntax to the alternative syntax; however......, such transformations are not reversible since no general tool exists to automatically parse the alternative syntax back into XML. We present XSugar, which makes it possible to manage dual syntax for XML languages. An XSugar specification is built around a context-free grammar that unifies the two syntaxes...... of a language. Given such a specification, the XSugar tool can translate from alternative syntax to XML and vice versa. Moreover, the tool statically checks that the transformations are reversible and that all XML documents generated from the alternative syntax are valid according to a given XML schema....

  19. Specifying OLAP Cubes On XML Data

    DEFF Research Database (Denmark)

    Jensen, Mikael Rune; Møller, Thomas Holmgren; Pedersen, Torben Bach

    in modern enterprises. In the data warehousing approach, selected information is extracted in advance and stored in a repository. This approach is used because of its high performance. However, in many situations a logical (rather than physical) integration of data is preferable. Previous web-based data......On-Line Analytical Processing (OLAP) enables analysts to gain insight into data through fast and interactive access to a variety of possible views on information, organized in a dimensional model. The demand for data integration is rapidly becoming larger as more and more information sources appear....... Extensible Markup Language (XML) is fast becoming the new standard for data representation and exchange on the World Wide Web. The rapid emergence of XML data on the web, e.g., business-to-business (B2B) ecommerce, is making it necessary for OLAP and other data analysis tools to handleXML data as well...

  20. Expressiveness considerations of XML signatures

    DEFF Research Database (Denmark)

    Jensen, Meiko; Meyer, Christopher

    2011-01-01

    XML Signatures are used to protect XML-based Web Service communication against a broad range of attacks related to man-in-the-middle scenarios. However, due to the complexity of the Web Services specification landscape, the task of applying XML Signatures in a robust and reliable manner becomes...... more and more challenging. In this paper, we investigate this issue, describing how an attacker can still interfere with Web Services communication even in the presence of XML Signatures. Additionally, we discuss the interrelation of XML Signatures and XML Encryption, focussing on their security...

  1. XML in an Adaptive Framework for Instrument Control

    Science.gov (United States)

    Ames, Troy J.

    2004-01-01

    NASA Goddard Space Flight Center is developing an extensible framework for instrument command and control, known as Instrument Remote Control (IRC), that combines the platform independent processing capabilities of Java with the power of the Extensible Markup Language (XML). A key aspect of the architecture is software that is driven by an instrument description, written using the Instrument Markup Language (IML). IML is an XML dialect used to describe interfaces to control and monitor the instrument, command sets and command formats, data streams, communication mechanisms, and data processing algorithms.

  2. XML: Ejemplos de uso

    OpenAIRE

    Luján Mora, Sergio

    2011-01-01

    XML (eXtensible Markup Language, Lenguaje de marcas extensible) - Aplicación XML = Lenguaje de marcado = Vocabulario - Ejemplos: DocBook, Chemical Markup Language, Keyhole Markup Language, Mathematical Markup Language, Open Document, Open XML Format, Scalable Vector Graphics, Systems Byology Markup Language.

  3. Vague element selection and query rewriting for XML retrieval

    NARCIS (Netherlands)

    Mihajlovic, V.; Hiemstra, Djoerd; Blok, H.E.; de Jong, Franciska M.G.; Kraaij, W.

    In this paper we present the extension of our prototype three-level database system (TIJAH) developed for structured information retrieval. The extension is aimed at modeling vague search on XML elements. All three levels (conceptual, logical, and physical) of the TIJAH system are enhanced to

  4. Dual Syntax for XML Languages

    DEFF Research Database (Denmark)

    Brabrand, Claus; Møller, Anders; Schwartzbach, Michael Ignatieff

    2005-01-01

    XML is successful as a machine processable data interchange format, but it is often too verbose for human use. For this reason, many XML languages permit an alternative more legible non-XML syntax. XSLT stylesheets are often used to convert from the XML syntax to the alternative syntax; however......, such transformations are not reversible since no general tool exists to automatically parse the alternative syntax back into XML. We present XSugar, which makes it possible to manage dual syntax for XML languages. An XSugar specification is built around a context-free grammar that unifies the two syntaxes...

  5. Compression of Probabilistic XML documents

    NARCIS (Netherlands)

    Veldman, Irma

    2009-01-01

    Probabilistic XML (PXML) files resulting from data integration can become extremely large, which is undesired. For XML there are several techniques available to compress the document and since probabilistic XML is in fact (a special form of) XML, it might benefit from these methods even more. In

  6. XML-Intensive software development

    OpenAIRE

    Ibañez Anfurrutia, Felipe

    2016-01-01

    168 p. 1. IntroducciónXML es un lenguaje de meta-etiquetas, es decir, puede ser utilizado fundamentalmentepara crear lenguajes de etiquetas . La presencia de XML es unfenómeno generalizado. Sin embargo, su juventud hace que los desarrolladores seenfrentan a muchos desafíos al utilizar XML en aplicaciones de vanguardia. Estatesis enfrenta XML a tres escenarios diferentes: intercambio de documentos,Líneas de Producto Software (LPS) y Lenguajes eSpecíficos de Dominio (LSD).El intercambio digi...

  7. DICOM involving XML path-tag

    Science.gov (United States)

    Zeng, Qiang; Yao, Zhihong; Liu, Lei

    2011-03-01

    Digital Imaging and Communications in Medicine (DICOM) is a standard for handling, storing, printing, and transmitting information in medical imaging. XML (Extensible Markup Language) is a set of rules for encoding documents in machine-readable form which has become more and more popular. The combination of these two is very necessary and promising. Using XML tags instead of numeric labels in DICOM files will effectively increase the readability and enhance the clear hierarchical structure of DICOM files. However, due to the fact that the XML tags rely heavily on the orders of the tags, the strong data dependency has a lot of influence on the flexibility of inserting and exchanging data. In order to improve the extensibility and sharing of DICOM files, this paper introduces XML Path-Tag to DICOM. When a DICOM file is converted to XML format, adding simple Path-Tag into the DICOM file in place of complex tags will keep the flexibility of a DICOM file while inserting data elements and give full play to the advantages of the structure and readability of an XML file. Our method can solve the weak readability problem of DICOM files and the tedious work of inserting data into an XML file. In addition, we set up a conversion engine that can transform among traditional DICOM files, XML-DCM and XML-DCM files involving XML Path-Tag efficiently.

  8. Using a Combination of UML, C2RM, XML, and Metadata Registries to Support Long-Term Development/Engineering

    Science.gov (United States)

    2003-01-01

    Authenticat’n (XCBF) Authorizat’n (XACML) (SAML) Privacy (P3P) Digital Rights Management (XrML) Content Mngmnt (DASL) (WebDAV) Content Syndicat’n...Registry/ Repository BPSS eCommerce XML/EDI Universal Business Language (UBL) Internet & Computing Human Resources (HR-XML) Semantic KEY XML SPECIFICATIONS

  9. XML Based Course Websites.

    Science.gov (United States)

    Wollowski, Michael

    XML, the extensible markup language, is a quickly evolving technology that presents a viable alternative to courseware products and promises to ease the burden of Web authors, who edit their course pages directly. XML uses tags to label kinds of contents, rather than format information. The use of XML enables faculty to focus on providing…

  10. An XML-based communication protocol for accelerator distributed controls

    International Nuclear Information System (INIS)

    Catani, L.

    2008-01-01

    This paper presents the development of XMLvRPC, an RPC-like communication protocol based, for this particular application, on the TCP/IP and XML (eXtensible Markup Language) tools built-in in LabVIEW. XML is used to format commands and data passed between client and server while socket interface for communication uses either TCP or UDP transmission protocols. This implementation extends the features of these general purpose libraries and incorporates solutions that might provide, with limited modifications, full compatibility with well established and more general communication protocol, i.e. XML-RPC, while preserving portability to different platforms supported by LabVIEW. The XMLvRPC suite of software has been equipped with specific tools for its deployment in distributed control systems as, for instance, a quasi-automatic configuration and registration of the distributed components and a simple plug-and-play approach to the installation of new services. Key feature is the management of large binary arrays that allow coding of large binary data set, e.g. raw images, more efficiently with respect to the standard XML coding

  11. An XML-based communication protocol for accelerator distributed controls

    Energy Technology Data Exchange (ETDEWEB)

    Catani, L. [INFN-Roma Tor Vergata, Rome (Italy)], E-mail: luciano.catani@roma2.infn.it

    2008-03-01

    This paper presents the development of XMLvRPC, an RPC-like communication protocol based, for this particular application, on the TCP/IP and XML (eXtensible Markup Language) tools built-in in LabVIEW. XML is used to format commands and data passed between client and server while socket interface for communication uses either TCP or UDP transmission protocols. This implementation extends the features of these general purpose libraries and incorporates solutions that might provide, with limited modifications, full compatibility with well established and more general communication protocol, i.e. XML-RPC, while preserving portability to different platforms supported by LabVIEW. The XMLvRPC suite of software has been equipped with specific tools for its deployment in distributed control systems as, for instance, a quasi-automatic configuration and registration of the distributed components and a simple plug-and-play approach to the installation of new services. Key feature is the management of large binary arrays that allow coding of large binary data set, e.g. raw images, more efficiently with respect to the standard XML coding.

  12. Querying XML Data with SPARQL

    Science.gov (United States)

    Bikakis, Nikos; Gioldasis, Nektarios; Tsinaraki, Chrisa; Christodoulakis, Stavros

    SPARQL is today the standard access language for Semantic Web data. In the recent years XML databases have also acquired industrial importance due to the widespread applicability of XML in the Web. In this paper we present a framework that bridges the heterogeneity gap and creates an interoperable environment where SPARQL queries are used to access XML databases. Our approach assumes that fairly generic mappings between ontology constructs and XML Schema constructs have been automatically derived or manually specified. The mappings are used to automatically translate SPARQL queries to semantically equivalent XQuery queries which are used to access the XML databases. We present the algorithms and the implementation of SPARQL2XQuery framework, which is used for answering SPARQL queries over XML databases.

  13. XWeB: The XML Warehouse Benchmark

    Science.gov (United States)

    Mahboubi, Hadj; Darmont, Jérôme

    With the emergence of XML as a standard for representing business data, new decision support applications are being developed. These XML data warehouses aim at supporting On-Line Analytical Processing (OLAP) operations that manipulate irregular XML data. To ensure feasibility of these new tools, important performance issues must be addressed. Performance is customarily assessed with the help of benchmarks. However, decision support benchmarks do not currently support XML features. In this paper, we introduce the XML Warehouse Benchmark (XWeB), which aims at filling this gap. XWeB derives from the relational decision support benchmark TPC-H. It is mainly composed of a test data warehouse that is based on a unified reference model for XML warehouses and that features XML-specific structures, and its associate XQuery decision support workload. XWeB's usage is illustrated by experiments on several XML database management systems.

  14. Updating Recursive XML Views of Relations

    DEFF Research Database (Denmark)

    Choi, Byron; Cong, Gao; Fan, Wenfei

    2009-01-01

    This paper investigates the view update problem for XML views published from relational data. We consider XML views defined in terms of mappings directed by possibly recursive DTDs compressed into DAGs and stored in relations. We provide new techniques to efficiently support XML view updates...... specified in terms of XPath expressions with recursion and complex filters. The interaction between XPath recursion and DAG compression of XML views makes the analysis of the XML view update problem rather intriguing. Furthermore, many issues are still open even for relational view updates, and need...... to be explored. In response to these, on the XML side, we revise the notion of side effects and update semantics based on the semantics of XML views, and present effecient algorithms to translate XML updates to relational view updates. On the relational side, we propose a mild condition on SPJ views, and show...

  15. Storing XML Documents in Databases

    OpenAIRE

    Schmidt, A.R.; Manegold, Stefan; Kersten, Martin; Rivero, L.C.; Doorn, J.H.; Ferraggine, V.E.

    2005-01-01

    textabstractThe authors introduce concepts for loading large amounts of XML documents into databases where the documents are stored and maintained. The goal is to make XML databases as unobtrusive in multi-tier systems as possible and at the same time provide as many services defined by the XML standards as possible. The ubiquity of XML has sparked great interest in deploying concepts known from Relational Database Management Systems such as declarative query languages, transactions, indexes ...

  16. Compression of Probabilistic XML Documents

    Science.gov (United States)

    Veldman, Irma; de Keijzer, Ander; van Keulen, Maurice

    Database techniques to store, query and manipulate data that contains uncertainty receives increasing research interest. Such UDBMSs can be classified according to their underlying data model: relational, XML, or RDF. We focus on uncertain XML DBMS with as representative example the Probabilistic XML model (PXML) of [10,9]. The size of a PXML document is obviously a factor in performance. There are PXML-specific techniques to reduce the size, such as a push down mechanism, that produces equivalent but more compact PXML documents. It can only be applied, however, where possibilities are dependent. For normal XML documents there also exist several techniques for compressing a document. Since Probabilistic XML is (a special form of) normal XML, it might benefit from these methods even more. In this paper, we show that existing compression mechanisms can be combined with PXML-specific compression techniques. We also show that best compression rates are obtained with a combination of PXML-specific technique with a rather simple generic DAG-compression technique.

  17. Intelligent Search on XML Data

    NARCIS (Netherlands)

    Blanken, Henk; Grabs, T.; Schek, H-J.; Schenkel, R.; Weikum, G.; Unknown, [Unknown

    2003-01-01

    Recently, we have seen a steep increase in the popularity and adoption of XML, in areas such as traditional databases, e-business, the scientific environment, and on the web. Querying XML documents and data efficiently is a challenging issue; this book approaches search on XML data by combining

  18. Storing XML Documents in Databases

    NARCIS (Netherlands)

    A.R. Schmidt; S. Manegold (Stefan); M.L. Kersten (Martin); L.C. Rivero; J.H. Doorn; V.E. Ferraggine

    2005-01-01

    textabstractThe authors introduce concepts for loading large amounts of XML documents into databases where the documents are stored and maintained. The goal is to make XML databases as unobtrusive in multi-tier systems as possible and at the same time provide as many services defined by the XML

  19. Dual Syntax for XML Languages

    DEFF Research Database (Denmark)

    Brabrand, Claus; Møller, Anders; Schwartzbach, Michael Ignatieff

    2008-01-01

    of a language. Given such a specification, the XSugar tool can translate from alternative syntax to XML and vice versa. Moreover, the tool statically checks that the transformations are reversible and that all XML documents generated from the alternative syntax are valid according to a given XML schema....

  20. Using XML to encode TMA DES metadata

    Directory of Open Access Journals (Sweden)

    Oliver Lyttleton

    2011-01-01

    Full Text Available Background: The Tissue Microarray Data Exchange Specification (TMA DES is an XML specification for encoding TMA experiment data. While TMA DES data is encoded in XML, the files that describe its syntax, structure, and semantics are not. The DTD format is used to describe the syntax and structure of TMA DES, and the ISO 11179 format is used to define the semantics of TMA DES. However, XML Schema can be used in place of DTDs, and another XML encoded format, RDF, can be used in place of ISO 11179. Encoding all TMA DES data and metadata in XML would simplify the development and usage of programs which validate and parse TMA DES data. XML Schema has advantages over DTDs such as support for data types, and a more powerful means of specifying constraints on data values. An advantage of RDF encoded in XML over ISO 11179 is that XML defines rules for encoding data, whereas ISO 11179 does not. Materials and Methods: We created an XML Schema version of the TMA DES DTD. We wrote a program that converted ISO 11179 definitions to RDF encoded in XML, and used it to convert the TMA DES ISO 11179 definitions to RDF. Results: We validated a sample TMA DES XML file that was supplied with the publication that originally specified TMA DES using our XML Schema. We successfully validated the RDF produced by our ISO 11179 converter with the W3C RDF validation service. Conclusions: All TMA DES data could be encoded using XML, which simplifies its processing. XML Schema allows datatypes and valid value ranges to be specified for CDEs, which enables a wider range of error checking to be performed using XML Schemas than could be performed using DTDs.

  1. Using XML to encode TMA DES metadata.

    Science.gov (United States)

    Lyttleton, Oliver; Wright, Alexander; Treanor, Darren; Lewis, Paul

    2011-01-01

    The Tissue Microarray Data Exchange Specification (TMA DES) is an XML specification for encoding TMA experiment data. While TMA DES data is encoded in XML, the files that describe its syntax, structure, and semantics are not. The DTD format is used to describe the syntax and structure of TMA DES, and the ISO 11179 format is used to define the semantics of TMA DES. However, XML Schema can be used in place of DTDs, and another XML encoded format, RDF, can be used in place of ISO 11179. Encoding all TMA DES data and metadata in XML would simplify the development and usage of programs which validate and parse TMA DES data. XML Schema has advantages over DTDs such as support for data types, and a more powerful means of specifying constraints on data values. An advantage of RDF encoded in XML over ISO 11179 is that XML defines rules for encoding data, whereas ISO 11179 does not. We created an XML Schema version of the TMA DES DTD. We wrote a program that converted ISO 11179 definitions to RDF encoded in XML, and used it to convert the TMA DES ISO 11179 definitions to RDF. We validated a sample TMA DES XML file that was supplied with the publication that originally specified TMA DES using our XML Schema. We successfully validated the RDF produced by our ISO 11179 converter with the W3C RDF validation service. All TMA DES data could be encoded using XML, which simplifies its processing. XML Schema allows datatypes and valid value ranges to be specified for CDEs, which enables a wider range of error checking to be performed using XML Schemas than could be performed using DTDs.

  2. Using XML to encode TMA DES metadata

    Science.gov (United States)

    Lyttleton, Oliver; Wright, Alexander; Treanor, Darren; Lewis, Paul

    2011-01-01

    Background: The Tissue Microarray Data Exchange Specification (TMA DES) is an XML specification for encoding TMA experiment data. While TMA DES data is encoded in XML, the files that describe its syntax, structure, and semantics are not. The DTD format is used to describe the syntax and structure of TMA DES, and the ISO 11179 format is used to define the semantics of TMA DES. However, XML Schema can be used in place of DTDs, and another XML encoded format, RDF, can be used in place of ISO 11179. Encoding all TMA DES data and metadata in XML would simplify the development and usage of programs which validate and parse TMA DES data. XML Schema has advantages over DTDs such as support for data types, and a more powerful means of specifying constraints on data values. An advantage of RDF encoded in XML over ISO 11179 is that XML defines rules for encoding data, whereas ISO 11179 does not. Materials and Methods: We created an XML Schema version of the TMA DES DTD. We wrote a program that converted ISO 11179 definitions to RDF encoded in XML, and used it to convert the TMA DES ISO 11179 definitions to RDF. Results: We validated a sample TMA DES XML file that was supplied with the publication that originally specified TMA DES using our XML Schema. We successfully validated the RDF produced by our ISO 11179 converter with the W3C RDF validation service. Conclusions: All TMA DES data could be encoded using XML, which simplifies its processing. XML Schema allows datatypes and valid value ranges to be specified for CDEs, which enables a wider range of error checking to be performed using XML Schemas than could be performed using DTDs. PMID:21969921

  3. XML documents cluster research based on frequent subpatterns

    Science.gov (United States)

    Ding, Tienan; Li, Wei; Li, Xiongfei

    2015-12-01

    XML data is widely used in the information exchange field of Internet, and XML document data clustering is the hot research topic. In the XML document clustering process, measure differences between two XML documents is time costly, and impact the efficiency of XML document clustering. This paper proposed an XML documents clustering method based on frequent patterns of XML document dataset, first proposed a coding tree structure for encoding the XML document, and translate frequent pattern mining from XML documents into frequent pattern mining from string. Further, using the cosine similarity calculation method and cohesive hierarchical clustering method for XML document dataset by frequent patterns. Because of frequent patterns are subsets of the original XML document data, so the time consumption of XML document similarity measure is reduced. The experiment runs on synthetic dataset and the real datasets, the experimental result shows that our method is efficient.

  4. Simple proteomics data analysis in the object-oriented PowerShell.

    Science.gov (United States)

    Mohammed, Yassene; Palmblad, Magnus

    2013-01-01

    Scripting languages such as Perl and Python are appreciated for solving simple, everyday tasks in bioinformatics. A more recent, object-oriented command shell and scripting language, Windows PowerShell, has many attractive features: an object-oriented interactive command line, fluent navigation and manipulation of XML files, ability to consume Web services from the command line, consistent syntax and grammar, rich regular expressions, and advanced output formatting. The key difference between classical command shells and scripting languages, such as bash, and object-oriented ones, such as PowerShell, is that in the latter the result of a command is a structured object with inherited properties and methods rather than a simple stream of characters. Conveniently, PowerShell is included in all new releases of Microsoft Windows and therefore already installed on most computers in classrooms and teaching labs. In this chapter we demonstrate how PowerShell in particular allows easy interaction with mass spectrometry data in XML formats, connection to Web services for tools such as BLAST, and presentation of results as formatted text or graphics. These features make PowerShell much more than "yet another scripting language."

  5. XML and Better Web Searching.

    Science.gov (United States)

    Jackson, Joe; Gilstrap, Donald L.

    1999-01-01

    Addresses the implications of the new Web metalanguage XML for searching on the World Wide Web and considers the future of XML on the Web. Compared to HTML, XML is more concerned with structure of data than documents, and these data structures should prove conducive to precise, context rich searching. (Author/LRW)

  6. About Hierarchical XML Structures, Replacement of Relational Data Structures in Construction and Implementation of ERP Systems

    Directory of Open Access Journals (Sweden)

    2007-01-01

    Full Text Available The projects essential objective is to develop a new ERP system, of homogeneous nature, based on XML structures, as a possible replacement for classic ERP systems. The criteria that guide the objective definition are modularity, portability and Web connectivity. This objective is connected to a series of secondary objectives, considering that the technological approach will be filtered through the economic, social and legislative environment for a validation-by-context study. Statistics and cybernetics are to be used for simulation purposes. The homogeneous approach is meant to provide strong modularity and portability, in relation with the n-tier principles, but the main advantage of the model is its opening to the semantic Web, based on a Small enterprise ontology defined with XML-driven languages. Shockwave solutions will be used for implementing client-oriented hypermedia elements and an XML Gate will be de-fined between black box modules, for a clear separation with obvious advantages. Security and the XMLTP project will be an important issue for XML transfers due to the conflict between the open architecture of the Web, the readability of XML data and the privacy elements which have to be preserved within a business environment. The projects finality is oriented on small business but the semantic Web perspective and the surprising new conflict between hierarchical/network data structures and relational ones will certainly widen its scope. The proposed model is meant to fulfill the IT compatibility requirements of the European environment, defined as a knowledge society. The paper is a brief of the contributions of the team re-search at the project type A applied to CNCSIS "Research on the Role of XML in Building Extensible and Homogeneous ERP Systems".

  7. XML for catalogers and metadata librarians

    CERN Document Server

    Cole, Timothy W

    2013-01-01

    How are today's librarians to manage and describe the everexpanding volumes of resources, in both digital and print formats? The use of XML in cataloging and metadata workflows can improve metadata quality, the consistency of cataloging workflows, and adherence to standards. This book is intended to enable current and future catalogers and metadata librarians to progress beyond a bare surfacelevel acquaintance with XML, thereby enabling them to integrate XML technologies more fully into their cataloging workflows. Building on the wealth of work on library descriptive practices, cataloging, and metadata, XML for Catalogers and Metadata Librarians explores the use of XML to serialize, process, share, and manage library catalog and metadata records. The authors' expert treatment of the topic is written to be accessible to those with little or no prior practical knowledge of or experience with how XML is used. Readers will gain an educated appreciation of the nuances of XML and grasp the benefit of more advanced ...

  8. XML Transformations

    Directory of Open Access Journals (Sweden)

    Felician ALECU

    2012-04-01

    Full Text Available XSLT style sheets are designed to transform the XML documents into something else. The two most popular parsers of the moment are the Document Object Model (DOM and the Simple API for XML (SAX. DOM is an official recommendation of the W3C (available at http://www.w3.org/TR/REC-DOM-Level-1, while SAX is a de facto standard. A good parser should be fast, space efficient, rich in functionality and easy to use.

  9. Beginning XML, 5th Edition

    CERN Document Server

    Fawcett, Joe; Quin, Liam R E

    2012-01-01

    A complete update covering the many advances to the XML language The XML language has become the standard for writing documents on the Internet and is constantly improving and evolving. This new edition covers all the many new XML-based technologies that have appeared since the previous edition four years ago, providing you with an up-to-date introductory guide and reference. Packed with real-world code examples, best practices, and in-depth coverage of the most important and relevant topics, this authoritative resource explores both the advantages and disadvantages of XML and addresses the mo

  10. XML technology planning database : lessons learned

    Science.gov (United States)

    Some, Raphael R.; Neff, Jon M.

    2005-01-01

    A hierarchical Extensible Markup Language(XML) database called XCALIBR (XML Analysis LIBRary) has been developed by Millennium Program to assist in technology investment (ROI) analysis and technology Language Capability the New return on portfolio optimization. The database contains mission requirements and technology capabilities, which are related by use of an XML dictionary. The XML dictionary codifies a standardized taxonomy for space missions, systems, subsystems and technologies. In addition to being used for ROI analysis, the database is being examined for use in project planning, tracking and documentation. During the past year, the database has moved from development into alpha testing. This paper describes the lessons learned during construction and testing of the prototype database and the motivation for moving from an XML taxonomy to a standard XML-based ontology.

  11. Desain Sistem Keamanan Distribusi Data Dengan Menerapkan XML Encryption Dan XML Signature Berbasis Teknologi Web Service

    Directory of Open Access Journals (Sweden)

    Slamet Widodo

    2012-01-01

    Full Text Available Development of information technologies is often misused by an organization or a person to take criminal acts, such as the ability to steal and modify information in the data distribution for evil criminal purpose. The Rural Bank of Boyolali is conducting online financial transactions rather intensively, thus it requiring a security system on the distribution of data and credit transactions for their customer among branches offices to head office. The purpose of this study was to build a security system in credit transactions in Rural Bank of Boyolali for their customers among branches offices to head office. One way in protecting data distribution was used XML encryption and XML signature. The application of encryption technique in XML and digital signature in XML by using web service by using the AES (Advanced Encryption Standard and RSA (Rivest-Shamir-Adleman algorithms. This study was resulted the SOAP (Simple Object Access Protocol message security system, with XML and WSDL (Web Services Description Language, over HTTP (Hypertext Transfer Protocol to protect the customers’ credit transactions from intruders. Analysis of examination indicated that the data size (bytes transferred as results of uncompressed XML encryption were larger than compressed XML Encryption, which leads to significant changes between the data transferred that was the processing time of the compressed data was faster than uncompressed XML encryption.

  12. Information persistence using XML database technology

    Science.gov (United States)

    Clark, Thomas A.; Lipa, Brian E. G.; Macera, Anthony R.; Staskevich, Gennady R.

    2005-05-01

    The Joint Battlespace Infosphere (JBI) Information Management (IM) services provide information exchange and persistence capabilities that support tailored, dynamic, and timely access to required information, enabling near real-time planning, control, and execution for DoD decision making. JBI IM services will be built on a substrate of network centric core enterprise services and when transitioned, will establish an interoperable information space that aggregates, integrates, fuses, and intelligently disseminates relevant information to support effective warfighter business processes. This virtual information space provides individual users with information tailored to their specific functional responsibilities and provides a highly tailored repository of, or access to, information that is designed to support a specific Community of Interest (COI), geographic area or mission. Critical to effective operation of JBI IM services is the implementation of repositories, where data, represented as information, is represented and persisted for quick and easy retrieval. This paper will address information representation, persistence and retrieval using existing database technologies to manage structured data in Extensible Markup Language (XML) format as well as unstructured data in an IM services-oriented environment. Three basic categories of database technologies will be compared and contrasted: Relational, XML-Enabled, and Native XML. These technologies have diverse properties such as maturity, performance, query language specifications, indexing, and retrieval methods. We will describe our application of these evolving technologies within the context of a JBI Reference Implementation (RI) by providing some hopefully insightful anecdotes and lessons learned along the way. This paper will also outline future directions, promising technologies and emerging COTS products that can offer more powerful information management representations, better persistence mechanisms and

  13. XML Views: Part 1

    NARCIS (Netherlands)

    Rajugan, R.; Marik, V.; Retschitzegger, W.; Chang, E.; Dillon, T.; Stepankova, O.; Feng, L.

    The exponential growth and the nature of Internet and web-based applications made eXtensible Markup Language (XML) as the de-facto standard for data exchange and data dissemination. Now it is gaining momentum in replacing conventional data models for data representation. XML with its self-describing

  14. Automata, Logic, and XML

    OpenAIRE

    NEVEN, Frank

    2002-01-01

    We survey some recent developments in the broad area of automata and logic which are motivated by the advent of XML. In particular, we consider unranked tree automata, tree-walking automata, and automata over infinite alphabets. We focus on their connection with logic and on questions imposed by XML.

  15. Speed up of XML parsers with PHP language implementation

    Science.gov (United States)

    Georgiev, Bozhidar; Georgieva, Adriana

    2012-11-01

    In this paper, authors introduce PHP5's XML implementation and show how to read, parse, and write a short and uncomplicated XML file using Simple XML in a PHP environment. The possibilities for mutual work of PHP5 language and XML standard are described. The details of parsing process with Simple XML are also cleared. A practical project PHP-XML-MySQL presents the advantages of XML implementation in PHP modules. This approach allows comparatively simple search of XML hierarchical data by means of PHP software tools. The proposed project includes database, which can be extended with new data and new XML parsing functions.

  16. XML and Free Text.

    Science.gov (United States)

    Riggs, Ken Roger

    2002-01-01

    Discusses problems with marking free text, text that is either natural language or semigrammatical but unstructured, that prevent well-formed XML from marking text for readily available meaning. Proposes a solution to mark meaning in free text that is consistent with the intended simplicity of XML versus SGML. (Author/LRW)

  17. Personalization of XML Content Browsing Based on User Preferences

    Science.gov (United States)

    Encelle, Benoit; Baptiste-Jessel, Nadine; Sedes, Florence

    2009-01-01

    Personalization of user interfaces for browsing content is a key concept to ensure content accessibility. In this direction, we introduce concepts that result in the generation of personalized multimodal user interfaces for browsing XML content. User requirements concerning the browsing of a specific content type can be specified by means of…

  18. Compressing Aviation Data in XML Format

    Science.gov (United States)

    Patel, Hemil; Lau, Derek; Kulkarni, Deepak

    2003-01-01

    Design, operations and maintenance activities in aviation involve analysis of variety of aviation data. This data is typically in disparate formats making it difficult to use with different software packages. Use of a self-describing and extensible standard called XML provides a solution to this interoperability problem. XML provides a standardized language for describing the contents of an information stream, performing the same kind of definitional role for Web content as a database schema performs for relational databases. XML data can be easily customized for display using Extensible Style Sheets (XSL). While self-describing nature of XML makes it easy to reuse, it also increases the size of data significantly. Therefore, transfemng a dataset in XML form can decrease throughput and increase data transfer time significantly. It also increases storage requirements significantly. A natural solution to the problem is to compress the data using suitable algorithm and transfer it in the compressed form. We found that XML-specific compressors such as Xmill and XMLPPM generally outperform traditional compressors. However, optimal use of Xmill requires of discovery of optimal options to use while running Xmill. This, in turn, depends on the nature of data used. Manual disc0ver.y of optimal setting can require an engineer to experiment for weeks. We have devised an XML compression advisory tool that can analyze sample data files and recommend what compression tool would work the best for this data and what are the optimal settings to be used with a XML compression tool.

  19. XML in Projects GNU Gama and 3DGI

    DEFF Research Database (Denmark)

    Kolar, Jan; Soucek, Petr; Cepek, Ales

    2003-01-01

    This paper presents our practical experiences with XML in geodetic and geographical applications. The main concepts and ideas of XML are introduced in an example of a simple web based information system, which exploits the XHTML language. The article further describes how XML is used in GNU Gama...... for structuring data for a geodetic network adjustment. In another application of XML, it is demonstrated how XML can be used for a unified description of data from leveling registration units. Finally, the use of XML for modelling 3D geographical features within the 3DGI project is presented and a relation...

  20. StarDOM: From STAR format to XML

    International Nuclear Information System (INIS)

    Linge, Jens P.; Nilges, Michael; Ehrlich, Lutz

    1999-01-01

    StarDOM is a software package for the representation of STAR files as document object models and the conversion of STAR files into XML. This allows interactive navigation by using the Document Object Model representation of the data as well as easy access by XML query languages. As an example application, the entire BioMagResBank has been transformed into XML format. Using an XML query language, statistical queries on the collected NMR data sets can be constructed with very little effort. The BioMagResBank/XML data and the software can be obtained at http://www.nmr.embl-heidelberg.de/nmr/StarDOM/

  1. XML-Based Generator of C++ Code for Integration With GUIs

    Science.gov (United States)

    Hua, Hook; Oyafuso, Fabiano; Klimeck, Gerhard

    2003-01-01

    An open source computer program has been developed to satisfy a need for simplified organization of structured input data for scientific simulation programs. Typically, such input data are parsed in from a flat American Standard Code for Information Interchange (ASCII) text file into computational data structures. Also typically, when a graphical user interface (GUI) is used, there is a need to completely duplicate the input information while providing it to a user in a more structured form. Heretofore, the duplication of the input information has entailed duplication of software efforts and increases in susceptibility to software errors because of the concomitant need to maintain two independent input-handling mechanisms. The present program implements a method in which the input data for a simulation program are completely specified in an Extensible Markup Language (XML)-based text file. The key benefit for XML is storing input data in a structured manner. More importantly, XML allows not just storing of data but also describing what each of the data items are. That XML file contains information useful for rendering the data by other applications. It also then generates data structures in the C++ language that are to be used in the simulation program. In this method, all input data are specified in one place only, and it is easy to integrate the data structures into both the simulation program and the GUI. XML-to-C is useful in two ways: 1. As an executable, it generates the corresponding C++ classes and 2. As a library, it automatically fills the objects with the input data values.

  2. Subcortical orientation biases explain orientation selectivity of visual cortical cells.

    Science.gov (United States)

    Vidyasagar, Trichur R; Jayakumar, Jaikishan; Lloyd, Errol; Levichkina, Ekaterina V

    2015-04-01

    The primary visual cortex of carnivores and primates shows an orderly progression of domains of neurons that are selective to a particular orientation of visual stimuli such as bars and gratings. We recorded from single-thalamic afferent fibers that terminate in these domains to address the issue whether the orientation sensitivity of these fibers could form the basis of the remarkable orientation selectivity exhibited by most cortical cells. We first performed optical imaging of intrinsic signals to obtain a map of orientation domains on the dorsal aspect of the anaesthetized cat's area 17. After confirming using electrophysiological recordings the orientation preferences of single neurons within one or two domains in each animal, we pharmacologically silenced the cortex to leave only the afferent terminals active. The inactivation of cortical neurons was achieved by the superfusion of either kainic acid or muscimol. Responses of single geniculate afferents were then recorded by the use of high impedance electrodes. We found that the orientation preferences of the afferents matched closely with those of the cells in the orientation domains that they terminated in (Pearson's r = 0.633, n = 22, P = 0.002). This suggests a possible subcortical origin for cortical orientation selectivity. © 2015 The Authors. Physiological Reports published by Wiley Periodicals, Inc. on behalf of the American Physiological Society and The Physiological Society.

  3. Integrity Based Access Control Model for Multilevel XML Document

    Institute of Scientific and Technical Information of China (English)

    HONG Fan; FENG Xue-bin; HUANO Zhi; ZHENG Ming-hui

    2008-01-01

    XML's increasing popularity highlights the security demand for XML documents. A mandatory access control model for XML document is presented on the basis of investigation of the function dependency of XML documents and discussion of the integrity properties of multilevel XML document. Then, the algorithms for decomposition/recovery multilevel XML document into/from single level document are given, and the manipulation rules for typical operations of XQuery and XUpdate: QUERY, INSERT,UPDATE, and REMOVE, are elaborated. The multilevel XML document access model can meet the requirement of sensitive information processing application.

  4. XML: Ejemplos de uso (presentación)

    OpenAIRE

    Luján Mora, Sergio

    2011-01-01

    XML (eXtensible Markup Language, Lenguaje de marcas extensible) - Aplicación XML = Lenguaje de marcado = Vocabulario - Ejemplos: DocBook, Chemical Markup Language, Keyhole Markup Language, Mathematical Markup Language, Open Document, Open XML Format, Scalable Vector Graphics, Systems Byology Markup Language.

  5. The Cadmio XML healthcare record.

    Science.gov (United States)

    Barbera, Francesco; Ferri, Fernando; Ricci, Fabrizio L; Sottile, Pier Angelo

    2002-01-01

    The management of clinical data is a complex task. Patient related information reported in patient folders is a set of heterogeneous and structured data accessed by different users having different goals (in local or geographical networks). XML language provides a mechanism for describing, manipulating, and visualising structured data in web-based applications. XML ensures that the structured data is managed in a uniform and transparent manner independently from the applications and their providers guaranteeing some interoperability. Extracting data from the healthcare record and structuring them according to XML makes the data available through browsers. The MIC/MIE model (Medical Information Category/Medical Information Elements), which allows the definition and management of healthcare records and used in CADMIO, a HISA based project, is described in this paper, using XML for allowing the data to be visualised through web browsers.

  6. XML Flight/Ground Data Dictionary Management

    Science.gov (United States)

    Wright, Jesse; Wiklow, Colette

    2007-01-01

    A computer program generates Extensible Markup Language (XML) files that effect coupling between the command- and telemetry-handling software running aboard a spacecraft and the corresponding software running in ground support systems. The XML files are produced by use of information from the flight software and from flight-system engineering. The XML files are converted to legacy ground-system data formats for command and telemetry, transformed into Web-based and printed documentation, and used in developing new ground-system data-handling software. Previously, the information about telemetry and command was scattered in various paper documents that were not synchronized. The process of searching and reading the documents was time-consuming and introduced errors. In contrast, the XML files contain all of the information in one place. XML structures can evolve in such a manner as to enable the addition, to the XML files, of the metadata necessary to track the changes and the associated documentation. The use of this software has reduced the extent of manual operations in developing a ground data system, thereby saving considerable time and removing errors that previously arose in the translation and transcription of software information from the flight to the ground system.

  7. An XML Based Knowledge Management System for e-Collaboration and e-Learning

    Directory of Open Access Journals (Sweden)

    Varun Gopalakrishna

    2004-02-01

    Full Text Available This paper presents the development, key features, and the implementation principles of a sustainable and scaleable knowledge management system (KMS prototype for creating, capturing, organizing, and managing digital information in the form of Extensible Markup Language (XML documents and other popular file formats. It is aimed to provide a platform for global, instant, and secure access to and dissemination of information within a knowledge-intensive organization or a cluster of organizations through Internet or intranet. A three-tier system architecture was chosen for the KMS to provide performance and scalability while enabling future development that supports global, secure, real-time, and multi-media communication of information and knowledge among team members separated by great distance. An XML Content Server has been employed in this work to store, index, and retrieve large volumes of XML and binary content.

  8. XML Publishing with Adobe InDesign

    CERN Document Server

    Hoskins, Dorothy

    2010-01-01

    From Adobe InDesign CS2 to InDesign CS5, the ability to work with XML content has been built into every version of InDesign. Some of the useful applications are importing database content into InDesign to create catalog pages, exporting XML that will be useful for subsequent publishing processes, and building chunks of content that can be reused in multiple publications. In this Short Cut, we'll play with the contents of a college course catalog and see how we can use XML for course descriptions, tables, and other content. Underlying principles of XML structure, DTDs, and the InDesign namesp

  9. QUALITY OF SERVICE ORIENTED WEB SERVICE SELECTION: AN EVALUATION OF TECHNIQUES

    Directory of Open Access Journals (Sweden)

    Munjiah Nur Saadah

    2014-08-01

    Full Text Available Abstract In service-oriented computing, web services are the basic foundation that aims to facilitate building of business application in a more flexible and interoperable manner for enterprise collaboration. One of the most promising advantages of web service technology is the possibility of creating added-value services by combining existing ones. A key step for composing and executing services lies in the selection of the individual service to use. Much attention has been devoted to appropriate selection of service functionalities, but also the non-functional properties of the services play a key role. A web service selection technique must take as much as possible the important influencing aspects into account to the selection process in order to minimize the selection efforts. This paper evaluates several web service selection techniques published in literature with the focus on their contributions to web service selection. The evaluation results can be used as a basis for improving web service selection techniques and then simplifying the selection tasks.

  10. Parental selection of children's sexual orientation.

    Science.gov (United States)

    Greenberg, A S; Bailey, J M

    2001-08-01

    As we learn more about the causes of sexual orientation, the likelihood increases that parents will one day be able to select the orientation of their children. This possibility (at least that of selecting for heterosexuality) has generated a great deal of concern among supporters of homosexual rights, with such selection being widely condemned as harmful and morally repugnant. Notwithstanding this widespread condemnation, and even assuming, as we do, that homosexuality is entirely acceptable morally, allowing parents, by means morally unproblematic in themselves, to select for heterosexuality would be morally acceptable. This is because allowing parents to select their children's sexual orientation would further parent's freedom to raise the sort of children they wish to raise and because selection for heterosexuality may benefit parents and children and is unlikely to cause significant harm.

  11. The duality of XML Markup and Programming notation

    DEFF Research Database (Denmark)

    Nørmark, Kurt

    2003-01-01

    In web projects it is often necessary to mix XML notation and program notation in a single document or program. In mono-lingual situations, the XML notation is either subsumed in the program or the program notation is subsumed in the XML document. As an introduction we analyze XML notation and pr...

  12. XML, TEI, and Digital Libraries in the Humanities.

    Science.gov (United States)

    Nellhaus, Tobin

    2001-01-01

    Describes the history and major features of XML and TEI, discusses their potential utility for the creation of digital libraries, and focuses on XML's application in the humanities, particularly theater and drama studies. Highlights include HTML and hyperlinks; the impact of XML on text encoding and document access; and XML and academic…

  13. An Introduction to the Extensible Markup Language (XML).

    Science.gov (United States)

    Bryan, Martin

    1998-01-01

    Describes Extensible Markup Language (XML), a subset of the Standard Generalized Markup Language (SGML) that is designed to make it easy to interchange structured documents over the Internet. Topics include Document Type Definition (DTD), components of XML, the use of XML, text and non-text elements, and uses for XML-coded files. (LRW)

  14. Statistical Language Models for Intelligent XML Retrieval

    NARCIS (Netherlands)

    Hiemstra, Djoerd; Blanken, Henk; Grabs, T.; Schek, H-J.; Schenkel, R.; Weikum, G.

    2003-01-01

    The XML standards that are currently emerging have a number of characteristics that can also be found in database management systems, like schemas (DTDs and XML schema) and query languages (XPath and XQuery). Following this line of reasoning, an XML database might resemble traditional database

  15. Statistical language Models for Intelligent XML Retrieval

    NARCIS (Netherlands)

    Hiemstra, Djoerd; Blanken, H.M.; Grabs, T.; Schek, H-J.; Schenkel, R.; Weikum, G.

    2003-01-01

    The XML standards that are currently emerging have a number of characteristics that can also be found in database management systems, like schemas (DTDs and XML schema) and query languages (XPath and XQuery). Following this line of reasoning, an XML database might resemble traditional database

  16. Orientation-Selective Retinal Circuits in Vertebrates.

    Science.gov (United States)

    Antinucci, Paride; Hindges, Robert

    2018-01-01

    Visual information is already processed in the retina before it is transmitted to higher visual centers in the brain. This includes the extraction of salient features from visual scenes, such as motion directionality or contrast, through neurons belonging to distinct neural circuits. Some retinal neurons are tuned to the orientation of elongated visual stimuli. Such 'orientation-selective' neurons are present in the retinae of most, if not all, vertebrate species analyzed to date, with species-specific differences in frequency and degree of tuning. In some cases, orientation-selective neurons have very stereotyped functional and morphological properties suggesting that they represent distinct cell types. In this review, we describe the retinal cell types underlying orientation selectivity found in various vertebrate species, and highlight their commonalities and differences. In addition, we discuss recent studies that revealed the cellular, synaptic and circuit mechanisms at the basis of retinal orientation selectivity. Finally, we outline the significance of these findings in shaping our current understanding of how this fundamental neural computation is implemented in the visual systems of vertebrates.

  17. Using XML and Java for Astronomical Instrumentation Control

    Science.gov (United States)

    Ames, Troy; Koons, Lisa; Sall, Ken; Warsaw, Craig

    2000-01-01

    Traditionally, instrument command and control systems have been highly specialized, consisting mostly of custom code that is difficult to develop, maintain, and extend. Such solutions are initially very costly and are inflexible to subsequent engineering change requests, increasing software maintenance costs. Instrument description is too tightly coupled with details of implementation. NASA Goddard Space Flight Center is developing a general and highly extensible framework that applies to any kind of instrument that can be controlled by a computer. The software architecture combines the platform independent processing capabilities of Java with the power of the Extensible Markup Language (XML), a human readable and machine understandable way to describe structured data. A key aspect of the object-oriented architecture is software that is driven by an instrument description, written using the Instrument Markup Language (IML). ]ML is used to describe graphical user interfaces to control and monitor the instrument, command sets and command formats, data streams, and communication mechanisms. Although the current effort is targeted for the High-resolution Airborne Wideband Camera, a first-light instrument of the Stratospheric Observatory for Infrared Astronomy, the framework is designed to be generic and extensible so that it can be applied to any instrument.

  18. XML for data representation and model specification in neuroscience.

    Science.gov (United States)

    Crook, Sharon M; Howell, Fred W

    2007-01-01

    EXtensible Markup Language (XML) technology provides an ideal representation for the complex structure of models and neuroscience data, as it is an open file format and provides a language-independent method for storing arbitrarily complex structured information. XML is composed of text and tags that explicitly describe the structure and semantics of the content of the document. In this chapter, we describe some of the common uses of XML in neuroscience, with case studies in representing neuroscience data and defining model descriptions based on examples from NeuroML. The specific methods that we discuss include (1) reading and writing XML from applications, (2) exporting XML from databases, (3) using XML standards to represent neuronal morphology data, (4) using XML to represent experimental metadata, and (5) creating new XML specifications for models.

  19. Assessing XML Data Management with XMark

    OpenAIRE

    Schmidt, A.R.; Waas, F.; Kersten, Martin; Carey, M.J.; Manolescu, I.; Busse, R.

    2002-01-01

    textabstractWe discuss some of the experiences we gathered during the development and deployment of XMark, a tool to assess the infrastructure and performance of XML Data Management Systems. Since the appearance of the first XML database prototypes in research institutions and development labs, topics like validation, performance evaluation and optimization of XML query processors have received significant interest. The XMark benchmark follows a tradition in database research and provides a f...

  20. Static Analysis of XML Transformations in Java

    DEFF Research Database (Denmark)

    Kirkegaard, Christian; Møller, Anders; Schwartzbach, Michael I.

    2004-01-01

    of XML documents to be defined, there are generally no automatic mechanisms for statically checking that a program transforms from one class to another as intended. We introduce Xact, a high-level approach for Java using XML templates as a first-class data type with operations for manipulating XML values...

  1. "The Wonder Years" of XML.

    Science.gov (United States)

    Gazan, Rich

    2000-01-01

    Surveys the current state of Extensible Markup Language (XML), a metalanguage for creating structured documents that describe their own content, and its implications for information professionals. Predicts that XML will become the common language underlying Web, word processing, and database formats. Also discusses Extensible Stylesheet Language…

  2. XML specifications DanRIS

    DEFF Research Database (Denmark)

    2009-01-01

    XML specifications for DanRIS (Danish Registration- og InformationsSystem), where the the aim is: Improved exchange of data Improved data processing Ensuring future access to all gathered data from the year 1999 until now......XML specifications for DanRIS (Danish Registration- og InformationsSystem), where the the aim is: Improved exchange of data Improved data processing Ensuring future access to all gathered data from the year 1999 until now...

  3. The OLAP-XML Federation System

    DEFF Research Database (Denmark)

    Yin, Xuepeng; Pedersen, Torben Bach

    2006-01-01

    We present the logical “OLAP-XML Federation System” that enables the external data available in XML format to be used as virtual dimensions. Unlike the complex and time-consuming physical integration of OLAP and external data in current OLAP systems, our system makes OLAP queries referencing fast...

  4. δ-dependency for privacy-preserving XML data publishing.

    Science.gov (United States)

    Landberg, Anders H; Nguyen, Kinh; Pardede, Eric; Rahayu, J Wenny

    2014-08-01

    An ever increasing amount of medical data such as electronic health records, is being collected, stored, shared and managed in large online health information systems and electronic medical record systems (EMR) (Williams et al., 2001; Virtanen, 2009; Huang and Liou, 2007) [1-3]. From such rich collections, data is often published in the form of census and statistical data sets for the purpose of knowledge sharing and enabling medical research. This brings with it an increasing need for protecting individual people privacy, and it becomes an issue of great importance especially when information about patients is exposed to the public. While the concept of data privacy has been comprehensively studied for relational data, models and algorithms addressing the distinct differences and complex structure of XML data are yet to be explored. Currently, the common compromise method is to convert private XML data into relational data for publication. This ad hoc approach results in significant loss of useful semantic information previously carried in the private XML data. Health data often has very complex structure, which is best expressed in XML. In fact, XML is the standard format for exchanging (e.g. HL7 version 3(1)) and publishing health information. Lack of means to deal directly with data in XML format is inevitably a serious drawback. In this paper we propose a novel privacy protection model for XML, and an algorithm for implementing this model. We provide general rules, both for transforming a private XML schema into a published XML schema, and for mapping private XML data to the new privacy-protected published XML data. In addition, we propose a new privacy property, δ-dependency, which can be applied to both relational and XML data, and that takes into consideration the hierarchical nature of sensitive data (as opposed to "quasi-identifiers"). Lastly, we provide an implementation of our model, algorithm and privacy property, and perform an experimental analysis

  5. Algebra-Based Optimization of XML-Extended OLAP Queries

    DEFF Research Database (Denmark)

    Yin, Xuepeng; Pedersen, Torben Bach

    In today’s OLAP systems, integrating fast changing data, e.g., stock quotes, physically into a cube is complex and time-consuming. The widespread use of XML makes it very possible that this data is available in XML format on the WWW; thus, making XML data logically federated with OLAP systems...... is desirable. This report presents a complete foundation for such OLAP-XML federations. This includes a prototypical query engine, a simplified query semantics based on previous work, and a complete physical algebra which enables precise modeling of the execution tasks of an OLAP-XML query. Effective algebra...

  6. How Does XML Help Libraries?

    Science.gov (United States)

    Banerjee, Kyle

    2002-01-01

    Discusses XML, how it has transformed the way information is managed and delivered, and its impact on libraries. Topics include how XML differs from other markup languages; the document object model (DOM); style sheets; practical applications for archival materials, interlibrary loans, digital collections, and MARC data; and future possibilities.…

  7. Performance analysis of Java APIS for XML processing

    OpenAIRE

    Oliveira, Bruno; Santos, Vasco; Belo, Orlando

    2013-01-01

    Over time, XML markup language has acquired a considerable importance in applications development, standards definition and in the representation of large volumes of data, such as databases. Today, processing XML documents in a short period of time is a critical activity in a large range of applications, which imposes choosing the most appropriate mechanism to parse XML documents quickly and efficiently. When using a programming language for XML processing, such as ...

  8. Processing XML with Java – a performance benchmark

    OpenAIRE

    Oliveira, Bruno; Santos, Vasco; Belo, Orlando

    2013-01-01

    Over time, XML markup language has acquired a considerable importance in applications development, standards definition and in the representation of large volumes of data, such as databases. Today, processing XML documents in a short period of time is a critical activity in a large range of applications, which imposes choosing the most appropriate mechanism to parse XML documents quickly and efficiently. When using a programming language for XML processing, suc...

  9. Principles of reusability of XML-based enterprise documents

    Directory of Open Access Journals (Sweden)

    Roman Malo

    2010-01-01

    Full Text Available XML (Extensible Markup Language represents one of flexible platforms for processing enterprise documents. Its simple syntax and powerful software infrastructure for processing this type of documents is a guarantee for high interoperability of individual documents. XML is today one of technologies influencing all aspects of ICT area.In the paper questions and basic principles of reusing XML-based documents are described in the field of enterprise documents. If we use XML databases or XML data types for storing these types of documents then partial redundancy could be expected due to possible documents’ similarity. This similarity can be found especially in documents’ structure and also in documents’ content and its elimination is necessary part of data optimization.The main idea of the paper is focused to possibilities how to think about dividing complex XML docu­ments into independent fragments that can be used as standalone documents and how to process them.Conclusions could be applied within software tools working with XML-based structured data and documents as document management systems or content management systems.

  10. An XML-hierarchical data structure for ENSDF

    International Nuclear Information System (INIS)

    Hurst, Aaron M.

    2016-01-01

    A data structure based on an eXtensible Markup Language (XML) hierarchy according to experimental nuclear structure data in the Evaluated Nuclear Structure Data File (ENSDF) is presented. A Python-coded translator has been developed to interpret the standard one-card records of the ENSDF datasets, together with their associated quantities defined according to field position, and generate corresponding representative XML output. The quantities belonging to this mixed-record format are described in the ENSDF manual. Of the 16 ENSDF records in total, XML output has been successfully generated for 15 records. An XML-translation for the Comment Record is yet to be implemented; this will be considered in a separate phase of the overall translation effort. Continuation records, not yet implemented, will also be treated in a future phase of this work. Several examples are presented in this document to illustrate the XML schema and methods for handling the various ENSDF data types. However, the proposed nomenclature for the XML elements and attributes need not necessarily be considered as a fixed set of constructs. Indeed, better conventions may be suggested and a consensus can be achieved amongst the various groups of people interested in this project. The main purpose here is to present an initial phase of the translation effort to demonstrate the feasibility of interpreting ENSDF datasets and creating a representative XML-structured hierarchy for data storage.

  11. Alternatives to relational database: comparison of NoSQL and XML approaches for clinical data storage.

    Science.gov (United States)

    Lee, Ken Ka-Yin; Tang, Wai-Choi; Choi, Kup-Sze

    2013-04-01

    Clinical data are dynamic in nature, often arranged hierarchically and stored as free text and numbers. Effective management of clinical data and the transformation of the data into structured format for data analysis are therefore challenging issues in electronic health records development. Despite the popularity of relational databases, the scalability of the NoSQL database model and the document-centric data structure of XML databases appear to be promising features for effective clinical data management. In this paper, three database approaches--NoSQL, XML-enabled and native XML--are investigated to evaluate their suitability for structured clinical data. The database query performance is reported, together with our experience in the databases development. The results show that NoSQL database is the best choice for query speed, whereas XML databases are advantageous in terms of scalability, flexibility and extensibility, which are essential to cope with the characteristics of clinical data. While NoSQL and XML technologies are relatively new compared to the conventional relational database, both of them demonstrate potential to become a key database technology for clinical data management as the technology further advances. Copyright © 2012 Elsevier Ireland Ltd. All rights reserved.

  12. XML Schema Languages: Beyond DTD.

    Science.gov (United States)

    Ioannides, Demetrios

    2000-01-01

    Discussion of XML (extensible markup language) and the traditional DTD (document type definition) format focuses on efforts of the World Wide Web Consortium's XML schema working group to develop a schema language to replace DTD that will be capable of defining the set of constraints of any possible data resource. (Contains 14 references.) (LRW)

  13. XML Based Business-to-Business E-Commerce Frameworks%基于XML的B2B电子商务构架

    Institute of Scientific and Technical Information of China (English)

    范国闯; 刘庆文; 李京; 钟华

    2002-01-01

    The B2B (Business-to-Business)e-commerce framework solves the key problem-interoperability between enterprise during e-commerce transactions.Firstly,this paper presents several key factors of B2B e-commerce framework by analyzing the role of frameworks.Moreover,this paper analyzeds and compares several international popular B2B frameworks from from the point of view of these factors.Finally,this paper proposes the design principles,objectives and e-commerce transaction language of cnXML (Chiese e-Commerce XML)frameworks.

  14. The appropriateness of XML for diagnostic description

    Energy Technology Data Exchange (ETDEWEB)

    Neto, A. [Associacao Euratom/IST, Centro de Fusao Nuclear, Av. Rovisco Pais, P-1049-001 Lisboa (Portugal)], E-mail: andre.neto@cfn.ist.utl.pt; Lister, J.B. [CRPP-EPFL, Association EURATOM-Confederation Suisse, 1015 Lausanne (Switzerland); Fernandes, H. [Associacao Euratom/IST, Centro de Fusao Nuclear, Av. Rovisco Pais, P-1049-001 Lisboa (Portugal); Yonekawa, I. [JAEA, Japan Atomic Energy Agency Naka (Japan); Varandas, C.A.F. [Associacao Euratom/IST, Centro de Fusao Nuclear, Av. Rovisco Pais, P-1049-001 Lisboa (Portugal)

    2007-10-15

    A standard for the self-description of fusion plasma diagnostics will be required in the near future. The motivation is to maintain and organize the information on all the components of a laboratory experiment, from the hardware to the access security, to save time and money. Since there is no existing standard to organize this kind of information, every EU Association stores and organizes each experiment in different ways. This can lead to severe problems when the particular organization schema is poorly documented. Standardization is the key to solve these problems. From the commercial information on the diagnostic (component supplier; component price) to the hardware description (component specifications; drawings) to the operation of the equipment (finite state machines) through change control (who changed what and when) and internationalization (information at least in English and a local language). This problem will be met on the ITER project, for which a solution is essential. A strong candidate solution is the Extensible Markup Language (XML). In this paper, a review of the current status of XML related technologies will be presented.

  15. The appropriateness of XML for diagnostic description

    International Nuclear Information System (INIS)

    Neto, A.; Lister, J.B.; Fernandes, H.; Yonekawa, I.; Varandas, C.A.F.

    2007-01-01

    A standard for the self-description of fusion plasma diagnostics will be required in the near future. The motivation is to maintain and organize the information on all the components of a laboratory experiment, from the hardware to the access security, to save time and money. Since there is no existing standard to organize this kind of information, every EU Association stores and organizes each experiment in different ways. This can lead to severe problems when the particular organization schema is poorly documented. Standardization is the key to solve these problems. From the commercial information on the diagnostic (component supplier; component price) to the hardware description (component specifications; drawings) to the operation of the equipment (finite state machines) through change control (who changed what and when) and internationalization (information at least in English and a local language). This problem will be met on the ITER project, for which a solution is essential. A strong candidate solution is the Extensible Markup Language (XML). In this paper, a review of the current status of XML related technologies will be presented

  16. XML and E-Journals: The State of Play.

    Science.gov (United States)

    Wusteman, Judith

    2003-01-01

    Discusses the introduction of the use of XML (Extensible Markup Language) in publishing electronic journals. Topics include standards, including DTDs (Document Type Definition), or document type definitions; aggregator requirements; SGML (Standard Generalized Markup Language); benefits of XML for e-journals; XML metadata; the possibility of…

  17. A Survey in Indexing and Searching XML Documents.

    Science.gov (United States)

    Luk, Robert W. P.; Leong, H. V.; Dillon, Tharam S.; Chan, Alvin T. S.; Croft, W. Bruce; Allan, James

    2002-01-01

    Discussion of XML focuses on indexing techniques for XML documents, grouping them into flat-file, semistructured, and structured indexing paradigms. Highlights include searching techniques, including full text search and multistage search; search result presentations; database and information retrieval system integration; XML query languages; and…

  18. XML Diagnostics Description Standard

    International Nuclear Information System (INIS)

    Neto, A.; Fernandes, H.; Varandas, C.; Lister, J.; Yonekawa, I.

    2006-01-01

    A standard for the self-description of fusion plasma diagnostics will be presented, based on the Extensible Markup Language (XML). The motivation is to maintain and organise the information on all the components of a laboratory experiment, from the hardware to the access security, to save time and money when problems arises. Since there is no existing standard to organise this kind of information, every Association stores and organises each experiment in different ways. This can lead to severe problems when the organisation schema is poorly documented or written in national languages. The exchange of scientists, researchers and engineers between laboratories is a common practice nowadays. Sometimes they have to install new diagnostics or to update existing ones and frequently they lose a great deal of time trying to understand the currently installed system. The most common problems are: no documentation available; the person who understands it has left; documentation written in the national language. Standardisation is the key to solving all the problems mentioned. From the commercial information on the diagnostic (component supplier; component price) to the hardware description (component specifications; drawings) to the operation of the equipment (finite state machines) through change control (who changed what and when) and internationalisation (information at least in the native language and in English), a common XML schema will be proposed. This paper will also discuss an extension of these ideas to the self-description of ITER plant systems, since the problems will be identical. (author)

  19. XML Syntax for Clinical Laboratory Procedure Manuals

    OpenAIRE

    Saadawi, Gilan; Harrison, James H.

    2003-01-01

    We have developed a document type description (DTD) in Extensable Markup Language (XML)1 for clinical laboratory procedures. Our XML syntax can adequately structure a variety of procedure types across different laboratories and is compatible with current procedure standards. The combination of this format with an XML content management system and appropriate style sheets will allow efficient procedure maintenance, distributed access, customized display and effective searching across a large b...

  20. How will XML impact industrial automation?

    CERN Multimedia

    Pinceti, P

    2002-01-01

    A working group of the World Wide Web Consortium (W3C) has overcome the limits of both HTML and SGML with the definition of the extensible markup language - XML. This article looks at how XML will affect industrial automation (2 pages).

  1. Web-Based Distributed XML Query Processing

    NARCIS (Netherlands)

    Smiljanic, M.; Feng, L.; Jonker, Willem; Blanken, Henk; Grabs, T.; Schek, H-J.; Schenkel, R.; Weikum, G.

    2003-01-01

    Web-based distributed XML query processing has gained in importance in recent years due to the widespread popularity of XML on the Web. Unlike centralized and tightly coupled distributed systems, Web-based distributed database systems are highly unpredictable and uncontrollable, with a rather

  2. Shuttle-Data-Tape XML Translator

    Science.gov (United States)

    Barry, Matthew R.; Osborne, Richard N.

    2005-01-01

    JSDTImport is a computer program for translating native Shuttle Data Tape (SDT) files from American Standard Code for Information Interchange (ASCII) format into databases in other formats. JSDTImport solves the problem of organizing the SDT content, affording flexibility to enable users to choose how to store the information in a database to better support client and server applications. JSDTImport can be dynamically configured by use of a simple Extensible Markup Language (XML) file. JSDTImport uses this XML file to define how each record and field will be parsed, its layout and definition, and how the resulting database will be structured. JSDTImport also includes a client application programming interface (API) layer that provides abstraction for the data-querying process. The API enables a user to specify the search criteria to apply in gathering all the data relevant to a query. The API can be used to organize the SDT content and translate into a native XML database. The XML format is structured into efficient sections, enabling excellent query performance by use of the XPath query language. Optionally, the content can be translated into a Structured Query Language (SQL) database for fast, reliable SQL queries on standard database server computers.

  3. Publishing with XML structure, enter, publish

    CERN Document Server

    Prost, Bernard

    2015-01-01

    XML is now at the heart of book publishing techniques: it provides the industry with a robust, flexible format which is relatively easy to manipulate. Above all, it preserves the future: the XML text becomes a genuine tactical asset enabling publishers to respond quickly to market demands. When new publishing media appear, it will be possible to very quickly make your editorial content available at a lower cost. On the downside, XML can become a bottomless pit for publishers attracted by its possibilities. There is a strong temptation to switch to audiovisual production and to add video and a

  4. XML-RPC技术及其应用分析%Analysis of XML-RPC Technology and Its Application

    Institute of Scientific and Technical Information of China (English)

    姚鹤岭

    2005-01-01

    为了说明XML-RPC技术在特定场合的应用价值,介绍了基于XML语言的XML-RPC分布式技术的概念与特点,在编写Meerkat客户端程序时,使用Python语言实现了类似ArcWeb服务的功能.研究表明:XML-RPC技术在一定条件下能够很好地满足不同应用间的通信与互操作的需求.

  5. Sample Scripts for Generating PaGE-OM XML [

    Lifescience Database Archive (English)

    Full Text Available Sample Scripts for Generating PaGE-OM XML This page is offering some sample scripts...on MySQL. Outline chart of procedure 6. Creating RDB tables for Generating PaGE-OM XML These scripts help yo...wnload: create_tables_sql2.zip 7. Generating PaGE-OM XML from phenotype data This sample Perl script helps y

  6. XML a bezpečnost I

    Czech Academy of Sciences Publication Activity Database

    Brechlerová, Dagmar

    2007-01-01

    Roč. 9, č. 1 (2007), s. 13-25 ISSN 1801-2140 R&D Projects: GA AV ČR 1ET200300413 Institutional research plan: CEZ:AV0Z10300504 Keywords : XML security * XML digitální podpis * XKMS Subject RIV: IN - Informatics, Computer Science http://crypto-world.info/index2.php

  7. The curse of namespaces in the domain of XML signature

    DEFF Research Database (Denmark)

    Jensen, Meiko; Liao, Lijun; Schwenk, Jörg

    2009-01-01

    The XML signature wrapping attack is one of the most discussed security issues of the Web Services security community during the last years. Until now, the issue has not been solved, and all countermeasure approaches proposed so far were shown to be insufficient. In this paper, we present yet...... another way to perform signature wrapping attacks by using the XML namespace injection technique. We show that the interplay of XML Signature, XPath, and the XML namespace concept has severe flaws that can be exploited for an attack, and that XML namespaces in general pose real troubles to digital...... signatures in the XML domain. Additionally, we present and discuss some new approaches in countering the proposed attack vector....

  8. Selective enhancement of orientation tuning before saccades.

    Science.gov (United States)

    Ohl, Sven; Kuper, Clara; Rolfs, Martin

    2017-11-01

    Saccadic eye movements cause a rapid sweep of the visual image across the retina and bring the saccade's target into high-acuity foveal vision. Even before saccade onset, visual processing is selectively prioritized at the saccade target. To determine how this presaccadic attention shift exerts its influence on visual selection, we compare the dynamics of perceptual tuning curves before movement onset at the saccade target and in the opposite hemifield. Participants monitored a 30-Hz sequence of randomly oriented gratings for a target orientation. Combining a reverse correlation technique previously used to study orientation tuning in neurons and general additive mixed modeling, we found that perceptual reports were tuned to the target orientation. The gain of orientation tuning increased markedly within the last 100 ms before saccade onset. In addition, we observed finer orientation tuning right before saccade onset. This increase in gain and tuning occurred at the saccade target location and was not observed at the incongruent location in the opposite hemifield. The present findings suggest, therefore, that presaccadic attention exerts its influence on vision in a spatially and feature-selective manner, enhancing performance and sharpening feature tuning at the future gaze location before the eyes start moving.

  9. Representing User Navigation in XML Retrieval with Structural Summaries

    DEFF Research Database (Denmark)

    Ali, M. S.; Consens, Mariano P.; Larsen, Birger

    This poster presents a novel way to represent user navigation in XML retrieval using collection statistics from XML summaries. Currently, developing user navigation models in XML retrieval is costly and the models are specific to collected user assessments. We address this problem by proposing...

  10. Utilizing Structural Knowledge for Information Retrieval in XML Databases

    NARCIS (Netherlands)

    Mihajlovic, V.; Hiemstra, Djoerd; Blok, H.E.; Apers, Peter M.G.

    In this paper we address the problem of immediate translation of eXtensible Mark-up Language (XML) information retrieval (IR) queries to relational database expressions and stress the benefits of using an intermediate XML-specific algebra over relational algebra. We show how adding an XML-specific

  11. Static Analysis for Event-Based XML Processing

    DEFF Research Database (Denmark)

    Møller, Anders

    2008-01-01

    Event-based processing of XML data - as exemplified by the popular SAX framework - is a powerful alternative to using W3C's DOM or similar tree-based APIs. The event-based approach is a streaming fashion with minimal memory consumption. This paper discusses challenges for creating program analyses...... for SAX applications. In particular, we consider the problem of statically guaranteeing the a given SAX program always produces only well-formed and valid XML output. We propose an analysis technique based on ecisting anglyses of Servlets, string operations, and XML graphs....

  12. Building adaptable and reusable XML applications with model transformations

    NARCIS (Netherlands)

    Ivanov, Ivan; van den Berg, Klaas

    2005-01-01

    We present an approach in which the semantics of an XML language is defined by means of a transformation from an XML document model (an XML schema) to an application specific model. The application specific model implements the intended behavior of documents written in the language. A transformation

  13. Schema Design and Normalization Algorithm for XML Databases Model

    Directory of Open Access Journals (Sweden)

    Samir Abou El-Seoud

    2009-06-01

    Full Text Available In this paper we study the problem of schema design and normalization in XML databases model. We show that, like relational databases, XML documents may contain redundant information, and this redundancy may cause update anomalies. Furthermore, such problems are caused by certain functional dependencies among paths in the document. Based on our research works, in which we presented the functional dependencies and normal forms of XML Schema, we present the decomposition algorithm for converting any XML Schema into normalized one, that satisfies X-BCNF.

  14. The Big Bang - XML expanding the information universe

    International Nuclear Information System (INIS)

    Rutt, S.; Chamberlain, M.; Buckley, G.

    2004-01-01

    The XML language is discussed as a tool in the information management. Industries are adopting XML as a means of making disparate systems talk with each other or as a means of swapping information between different organisations and different operating systems by using a common set of mark-up. More important to this discussion is the ability to use XML within the field of Technical Documentation and Publication. The capabilities of XML in work with different types of documents are presented. In conclusion, a summary is given of the benefits of using an XML solution: Precisely match your requirements at no more initial cost; Single Source Dynamic Content Delivery and Management; 100% of authors time is spent creating content; Content is no longer locked into its format; Reduced hardware and data storage requirements; Content survives the publishing lifecycle; Auto-versioning/release management control; Workflows can be mapped and electronic audit trails made

  15. Using XML and Java Technologies for Astronomical Instrument Control

    Science.gov (United States)

    Ames, Troy; Case, Lynne; Powers, Edward I. (Technical Monitor)

    2001-01-01

    Traditionally, instrument command and control systems have been highly specialized, consisting mostly of custom code that is difficult to develop, maintain, and extend. Such solutions are initially very costly and are inflexible to subsequent engineering change requests, increasing software maintenance costs. Instrument description is too tightly coupled with details of implementation. NASA Goddard Space Flight Center, under the Instrument Remote Control (IRC) project, is developing a general and highly extensible framework that applies to any kind of instrument that can be controlled by a computer. The software architecture combines the platform independent processing capabilities of Java with the power of the Extensible Markup Language (XML), a human readable and machine understandable way to describe structured data. A key aspect of the object-oriented architecture is that the software is driven by an instrument description, written using the Instrument Markup Language (IML), a dialect of XML. IML is used to describe the command sets and command formats of the instrument, communication mechanisms, format of the data coming from the instrument, and characteristics of the graphical user interface to control and monitor the instrument. The IRC framework allows the users to define a data analysis pipeline which converts data coming out of the instrument. The data can be used in visualizations in order for the user to assess the data in real-time, if necessary. The data analysis pipeline algorithms can be supplied by the user in a variety of forms or programming languages. Although the current integration effort is targeted for the High-resolution Airborne Wideband Camera (HAWC) and the Submillimeter and Far Infrared Experiment (SAFIRE), first-light instruments of the Stratospheric Observatory for Infrared Astronomy (SOFIA), the framework is designed to be generic and extensible so that it can be applied to any instrument. Plans are underway to test the framework

  16. ADASS Web Database XML Project

    Science.gov (United States)

    Barg, M. I.; Stobie, E. B.; Ferro, A. J.; O'Neil, E. J.

    In the spring of 2000, at the request of the ADASS Program Organizing Committee (POC), we began organizing information from previous ADASS conferences in an effort to create a centralized database. The beginnings of this database originated from data (invited speakers, participants, papers, etc.) extracted from HyperText Markup Language (HTML) documents from past ADASS host sites. Unfortunately, not all HTML documents are well formed and parsing them proved to be an iterative process. It was evident at the beginning that if these Web documents were organized in a standardized way, such as XML (Extensible Markup Language), the processing of this information across the Web could be automated, more efficient, and less error prone. This paper will briefly review the many programming tools available for processing XML, including Java, Perl and Python, and will explore the mapping of relational data from our MySQL database to XML.

  17. TIJAH: Embracing IR Methods in XML Databases

    NARCIS (Netherlands)

    List, Johan; Mihajlovic, V.; Ramirez, Georgina; de Vries, A.P.; Hiemstra, Djoerd; Blok, H.E.

    2005-01-01

    This paper discusses our participation in INEX (the Initiative for the Evaluation of XML Retrieval) using the TIJAH XML-IR system. TIJAH's system design follows a `standard' layered database architecture, carefully separating the conceptual, logical and physical levels. At the conceptual level, we

  18. A comparison of database systems for XML-type data

    NARCIS (Netherlands)

    Risse, J.E.; Leunissen, J.A.M.

    2010-01-01

    Background: In the field of bioinformatics interchangeable data formats based on XML are widely used. XML-type data is also at the core of most web services. With the increasing amount of data stored in XML comes the need for storing and accessing the data. In this paper we analyse the suitability

  19. An XML-based framework for personalized health management.

    Science.gov (United States)

    Lee, Hiye-Ja; Park, Seung-Hun; Jeong, Byeong-Soo

    2006-01-01

    This paper proposes a framework for personalized health management. In this framework, XML technology is used for representing and managing the health information and knowledge. Major components of the framework are Health Management Prescription (HMP) Expert System and Health Information Repository. The HMP Expert System generates a HMP efficiently by using XML-based templates. Health Information Repository provides integrated health information and knowledge for personalized health management by using XML and relational database together.

  20. Exploring PSI-MI XML Collections Using DescribeX

    Directory of Open Access Journals (Sweden)

    Samavi Reza

    2007-12-01

    Full Text Available PSI-MI has been endorsed by the protein informatics community as a standard XML data exchange format for protein-protein interaction datasets. While many public databases support the standard, there is a degree of heterogeneity in the way the proposed XML schema is interpreted and instantiated by different data providers. Analysis of schema instantiation in large collections of XML data is a challenging task that is unsupported by existing tools.

  1. PDBML: the representation of archival macromolecular structure data in XML.

    Science.gov (United States)

    Westbrook, John; Ito, Nobutoshi; Nakamura, Haruki; Henrick, Kim; Berman, Helen M

    2005-04-01

    The Protein Data Bank (PDB) has recently released versions of the PDB Exchange dictionary and the PDB archival data files in XML format collectively named PDBML. The automated generation of these XML files is driven by the data dictionary infrastructure in use at the PDB. The correspondences between the PDB dictionary and the XML schema metadata are described as well as the XML representations of PDB dictionaries and data files.

  2. An Introduction to XML and Web Technologies

    DEFF Research Database (Denmark)

    Møller, Anders; Schwartzbach, Michael Ignatieff

    , building on top of the early foundations. This book offers a comprehensive introduction to the area. There are two main threads of development, corresponding to the two parts of this book. XML technologies generalize the notion of data on the Web from hypertext documents to arbitrary data, including those...... that have traditionally been the realm of databases. In this book we cover the basic XML technology and the supporting technologies of XPath, DTD, XML Schema, DSD2, RELAX NG, XSLT, XQuery, DOM, JDOM, JAXB, SAX, STX, SDuce, and XACT. Web technologies build on top of the HTTP protocol to provide richer...

  3. XML-based DICOM data format.

    Science.gov (United States)

    Yu, Cong; Yao, Zhihong

    2010-04-01

    To enhance the readability, improve the structure, and facilitate the sharing of digital imaging and communications in medicine (DICOM) files, this research proposed one kind of XML-based DICOM data format. Because XML Schema offers great flexibility for expressing constraints on the content model of elements, we used it to describe the new format, thus making it consistent with the one originally defined by DICOM. Meanwhile, such schemas can be used in the creation and validation of the XML-encoded DICOM files, acting as a standard for data transmission and sharing on the Web. Upon defining the new data format, we started with representing a single data element and further improved the whole data structure with the method of modularization. In contrast to the original format, the new one possesses better structure without loss of related information. In addition, we demonstrated the application of XSLT and XQuery. All of the advantages mentioned above resulted from this new data format.

  4. ANALISIS KOMUNIKASI DATA DENGAN XML DAN JSON PADA WEBSERVICE

    Directory of Open Access Journals (Sweden)

    Sudirman M.Kom

    2016-08-01

    Full Text Available Abstrak— Ukuran data pada proses komunikasi data menggunakan web service dalam jaringan akan sangat memengaruhi kecepatan proses transfer. XML dan JSON merupakan format data yang digunakan pada saat komunikasi data pada web service. JSON akan menghasilkan ukuran data yang lebih kecil jika dibandingkan dengan format XML. Keywords— komunikasi data, web service, XML, JSON.

  5. TX-Kw: An Effective Temporal XML Keyword Search

    OpenAIRE

    Rasha Bin-Thalab; Neamat El-Tazi; Mohamed E.El-Sharkawi

    2013-01-01

    Inspired by the great success of information retrieval (IR) style keyword search on the web, keyword search on XML has emerged recently. Existing methods cannot resolve challenges addressed by using keyword search in Temporal XML documents. We propose a way to evaluate temporal keyword search queries over Temporal XML documents. Moreover, we propose a new ranking method based on the time-aware IR ranking methods to rank temporal keyword search queries results. Extensive experiments have been ...

  6. An XML-based system for synthesis of data from disparate databases.

    Science.gov (United States)

    Kurc, Tahsin; Janies, Daniel A; Johnson, Andrew D; Langella, Stephen; Oster, Scott; Hastings, Shannon; Habib, Farhat; Camerlengo, Terry; Ervin, David; Catalyurek, Umit V; Saltz, Joel H

    2006-01-01

    Diverse data sets have become key building blocks of translational biomedical research. Data types captured and referenced by sophisticated research studies include high throughput genomic and proteomic data, laboratory data, data from imagery, and outcome data. In this paper, the authors present the application of an XML-based data management system to support integration of data from disparate data sources and large data sets. This system facilitates management of XML schemas and on-demand creation and management of XML databases that conform to these schemas. They illustrate the use of this system in an application for genotype-phenotype correlation analyses. This application implements a method of phenotype-genotype correlation based on phylogenetic optimization of large data sets of mouse SNPs and phenotypic data. The application workflow requires the management and integration of genomic information and phenotypic data from external data repositories and from the results of phenotype-genotype correlation analyses. Our implementation supports the process of carrying out a complex workflow that includes large-scale phylogenetic tree optimizations and application of Maddison's concentrated changes test to large phylogenetic tree data sets. The data management system also allows collaborators to share data in a uniform way and supports complex queries that target data sets.

  7. XAL: An algebra for XML query optimization

    NARCIS (Netherlands)

    Frasincar, F.; Houben, G.J.P.M.; Pau, C.D.; Zhou, Xiaofang

    2002-01-01

    This paper proposes XAL, an XML ALgebra. Its novelty is based on the simplicity of its data model and its well-defined logical operators, which makes it suitable for composability, optimizability, and semantics definition of a query language for XML data. At the heart of the algebra resides the

  8. XML-kieliperhe tietokannan hallintajärjestelmien näkökulmasta

    OpenAIRE

    Imeläinen, Jani

    2006-01-01

    Tutkielmassa tarkastellaan XML-kieliperheen määrityksiä tietokannan hallintajärjestelmien näkökulmasta. Tutkielmassa verrataan XML-määrityksiä tietokannan hallintajärjestelmien peruskäsitteistöön ja esitellään näin rajaten olennaisimmat XML-määritykset. Päätavoitteena on selvittää XML-kieliperheen määritysten merkitys ja rooli XML-dokumenttien käsittelyssä tietokannan hallintajärjestelmissä. Tutkielman keskeinen tulos on viitekehys, jossa havainnollistetaan tietokannan halli...

  9. Integrating XML Data in the TARGIT OLAP System

    DEFF Research Database (Denmark)

    Pedersen, Dennis; Pedersen, Jesper; Pedersen, Torben Bach

    2004-01-01

    This paper presents work on logical integration of OLAP and XML data sources, carried out in cooperation between TARGIT, a Danish OLAP client vendor, and Aalborg University. A prototype has been developed that allows XML data on the WWW to be used as dimensions and measures in the OLAP system...... the ability to use XML data as measures, as well as a novel multigranular data model and query language that formalizes and extends the TARGIT data model and query language....

  10. Embedded XML DOM Parser: An Approach for XML Data Processing on Networked Embedded Systems with Real-Time Requirements

    Directory of Open Access Journals (Sweden)

    Cavia Soto MAngeles

    2008-01-01

    Full Text Available Abstract Trends in control and automation show an increase in data processing and communication in embedded automation controllers. The eXtensible Markup Language (XML is emerging as a dominant data syntax, fostering interoperability, yet little is still known about how to provide predictable real-time performance in XML processing, as required in the domain of industrial automation. This paper presents an XML processor that is designed with such real-time performance in mind. The publication attempts to disclose insight gained in applying techniques such as object pooling and reuse, and other methods targeted at avoiding dynamic memory allocation and its consequent memory fragmentation. Benchmarking tests are reported in order to illustrate the benefits of the approach.

  11. XML — an opportunity for data standards in the geosciences

    Science.gov (United States)

    Houlding, Simon W.

    2001-08-01

    Extensible markup language (XML) is a recently introduced meta-language standard on the Web. It provides the rules for development of metadata (markup) standards for information transfer in specific fields. XML allows development of markup languages that describe what information is rather than how it should be presented. This allows computer applications to process the information in intelligent ways. In contrast hypertext markup language (HTML), which fuelled the initial growth of the Web, is a metadata standard concerned exclusively with presentation of information. Besides its potential for revolutionizing Web activities, XML provides an opportunity for development of meaningful data standards in specific application fields. The rapid endorsement of XML by science, industry and e-commerce has already spawned new metadata standards in such fields as mathematics, chemistry, astronomy, multi-media and Web micro-payments. Development of XML-based data standards in the geosciences would significantly reduce the effort currently wasted on manipulating and reformatting data between different computer platforms and applications and would ensure compatibility with the new generation of Web browsers. This paper explores the evolution, benefits and status of XML and related standards in the more general context of Web activities and uses this as a platform for discussion of its potential for development of data standards in the geosciences. Some of the advantages of XML are illustrated by a simple, browser-compatible demonstration of XML functionality applied to a borehole log dataset. The XML dataset and the associated stylesheet and schema declarations are available for FTP download.

  12. Get It Together: Integrating Data with XML.

    Science.gov (United States)

    Miller, Ron

    2003-01-01

    Discusses the use of XML for data integration to move data across different platforms, including across the Internet, from a variety of sources. Topics include flexibility; standards; organizing databases; unstructured data and the use of meta tags to encode it with XML information; cost effectiveness; and eliminating client software licenses.…

  13. A comparison of database systems for XML-type data.

    Science.gov (United States)

    Risse, Judith E; Leunissen, Jack A M

    2010-01-01

    In the field of bioinformatics interchangeable data formats based on XML are widely used. XML-type data is also at the core of most web services. With the increasing amount of data stored in XML comes the need for storing and accessing the data. In this paper we analyse the suitability of different database systems for storing and querying large datasets in general and Medline in particular. All reviewed database systems perform well when tested with small to medium sized datasets, however when the full Medline dataset is queried a large variation in query times is observed. There is not one system that is vastly superior to the others in this comparison and, depending on the database size and the query requirements, different systems are most suitable. The best all-round solution is the Oracle 11~g database system using the new binary storage option. Alias-i's Lingpipe is a more lightweight, customizable and sufficiently fast solution. It does however require more initial configuration steps. For data with a changing XML structure Sedna and BaseX as native XML database systems or MySQL with an XML-type column are suitable.

  14. Domain XML semantic integration based on extraction rules and ontology mapping

    Directory of Open Access Journals (Sweden)

    Huayu LI

    2016-08-01

    Full Text Available A plenty of XML documents exist in petroleum engineering field, but traditional XML integration solution can’t provide semantic query, which leads to low data use efficiency. In light of WeXML(oil&gas well XML data semantic integration and query requirement, this paper proposes a semantic integration method based on extraction rules and ontology mapping. The method firstly defines a series of extraction rules with which elements and properties of WeXML Schema are mapped to classes and properties in WeOWL ontology, respectively; secondly, an algorithm is used to transform WeXML documents into WeOWL instances. Because WeOWL provides limited semantics, ontology mappings between two ontologies are then built to explain class and property of global ontology with terms of WeOWL, and semantic query based on global domain concepts model is provided. By constructing a WeXML data semantic integration prototype system, the proposed transformational rule, the transfer algorithm and the mapping rule are tested.

  15. Modeling the Arden Syntax for medical decisions in XML.

    Science.gov (United States)

    Kim, Sukil; Haug, Peter J; Rocha, Roberto A; Choi, Inyoung

    2008-10-01

    A new model expressing Arden Syntax with the eXtensible Markup Language (XML) was developed to increase its portability. Every example was manually parsed and reviewed until the schema and the style sheet were considered to be optimized. When the first schema was finished, several MLMs in Arden Syntax Markup Language (ArdenML) were validated against the schema. They were then transformed to HTML formats with the style sheet, during which they were compared to the original text version of their own MLM. When faults were found in the transformed MLM, the schema and/or style sheet was fixed. This cycle continued until all the examples were encoded into XML documents. The original MLMs were encoded in XML according to the proposed XML schema and reverse-parsed MLMs in ArdenML were checked using a public domain Arden Syntax checker. Two hundred seventy seven examples of MLMs were successfully transformed into XML documents using the model, and the reverse-parse yielded the original text version of MLMs. Two hundred sixty five of the 277 MLMs showed the same error patterns before and after transformation, and all 11 errors related to statement structure were resolved in XML version. The model uses two syntax checking mechanisms, first an XML validation process, and second, a syntax check using an XSL style sheet. Now that we have a schema for ArdenML, we can also begin the development of style sheets for transformation ArdenML into other languages.

  16. Juwele in XML

    OpenAIRE

    Habekost, Engelbert

    2005-01-01

    In der Forschungsabteilung der Humboldt-Universität wird die Schriftenreihe »Öffentliche Vorlesungen« seit 2002 mit der Software FrameMaker produziert. Verbunden damit war die Umstellung des Produktionsprozesses auf eine XML-basierte Dokumenterstellung sowie die Inhouse-Betreuung der kompletten Druckvorstufe.

  17. XML Translator for Interface Descriptions

    Science.gov (United States)

    Boroson, Elizabeth R.

    2009-01-01

    A computer program defines an XML schema for specifying the interface to a generic FPGA from the perspective of software that will interact with the device. This XML interface description is then translated into header files for C, Verilog, and VHDL. User interface definition input is checked via both the provided XML schema and the translator module to ensure consistency and accuracy. Currently, programming used on both sides of an interface is inconsistent. This makes it hard to find and fix errors. By using a common schema, both sides are forced to use the same structure by using the same framework and toolset. This makes for easy identification of problems, which leads to the ability to formulate a solution. The toolset contains constants that allow a programmer to use each register, and to access each field in the register. Once programming is complete, the translator is run as part of the make process, which ensures that whenever an interface is changed, all of the code that uses the header files describing it is recompiled.

  18. XML: How It Will Be Applied to Digital Library Systems.

    Science.gov (United States)

    Kim, Hyun-Hee; Choi, Chang-Seok

    2000-01-01

    Shows how XML is applied to digital library systems. Compares major features of XML with those of HTML and describes an experimental XML-based metadata retrieval system, which is based on the Dublin Core and is designed as a subsystem of the Korean Virtual Library and Information System (VINIS). (Author/LRW)

  19. DICOM supported sofware configuration by XML files

    International Nuclear Information System (INIS)

    LucenaG, Bioing Fabian M; Valdez D, Andres E; Gomez, Maria E; Nasisi, Oscar H

    2007-01-01

    A method for the configuration of informatics systems that provide support to DICOM standards using XML files is proposed. The difference with other proposals is base on that this system does not code the information of a DICOM objects file, but codes the standard itself in an XML file. The development itself is the format for the XML files mentioned, in order that they can support what DICOM normalizes for multiple languages. In this way, the same configuration file (or files) can be use in different systems. Jointly the XML configuration file generated, we wrote also a set of CSS and XSL files. So the same file can be visualized in a standard browser, as a query system of DICOM standard, emerging use, that did not was a main objective but brings a great utility and versatility. We exposed also some uses examples of the configuration file mainly in relation with the load of DICOM information objects. Finally, at the conclusions we show the utility that the system has already provided when the edition of DICOM standard changes from 2006 to 2007

  20. Design of XML-based plant data model

    International Nuclear Information System (INIS)

    Nair, Preetha M.; Padmini, S.; Gaur, Swati; Diwakar, M.P.

    2013-01-01

    XML has emerged as an open standard for exchanging structured data on various platforms to handle rich, nested, complex data structures. XML with its flexible tree-like data structure allows a more natural representation as compared to traditional databases. In this paper we present data model for plant data acquisition systems captured using XML technologies. Plant data acquisition systems in a typical Nuclear Power Plant consists of embedded nodes at the first tier and operator consoles at the second tier for operator operation, interaction and display of Plant parameters. This paper discusses a generic data model that was designed to capture process, network architecture, communication/interface protocol and diagnostics aspects required for a Nuclear Power Plant. (author)

  1. An Extended Role Based Access Control Method for XML Documents

    Institute of Scientific and Technical Information of China (English)

    MENG Xiao-feng; LUO Dao-feng; OU Jian-bo

    2004-01-01

    As XML has been increasingly important as the Data-change format of Internet and Intranet, access-control-on-XML-properties rises as a new issue.Role-based access control (RBAC) is an access control method that has been widely used in Internet, Operation System and Relation Data Base these 10 years.Though RBAC is already relatively mature in the above fields, new problems occur when it is used in XML properties.This paper proposes an integrated model to resolve these problems, after the fully analysis on the features of XML and RBAC.

  2. IMPROVED COMPRESSION OF XML FILES FOR FAST IMAGE TRANSMISSION

    Directory of Open Access Journals (Sweden)

    S. Manimurugan

    2011-02-01

    Full Text Available The eXtensible Markup Language (XML is a format that is widely used as a tool for data exchange and storage. It is being increasingly used in secure transmission of image data over wireless network and World Wide Web. Verbose in nature, XML files can be tens of megabytes long. Thus, to reduce their size and to allow faster transmission, compression becomes vital. Several general purpose compression tools have been proposed without satisfactory results. This paper proposes a novel technique using modified BWT for compressing XML files in a lossless fashion. The experimental results show that the performance of the proposed technique outperforms both general purpose and XML-specific compressors.

  3. CSchema: A Downgrading Policy Language for XML Access Control

    Institute of Scientific and Technical Information of China (English)

    Dong-Xi Liu

    2007-01-01

    The problem of regulating access to XML documents has attracted much attention from both academic and industry communities.In existing approaches, the XML elements specified by access policies are either accessible or inac-cessible according to their sensitivity.However, in some cases, the original XML elements are sensitive and inaccessible, but after being processed in some appropriate ways, the results become insensitive and thus accessible.This paper proposes a policy language to accommodate such cases, which can express the downgrading operations on sensitive data in XML documents through explicit calculations on them.The proposed policy language is called calculation-embedded schema (CSchema), which extends the ordinary schema languages with protection type for protecting sensitive data and specifying downgrading operations.CSchema language has a type system to guarantee the type correctness of the embedded calcula-tion expressions and moreover this type system also generates a security view after type checking a CSchema policy.Access policies specified by CSchema are enforced by a validation procedure, which produces the released documents containing only the accessible data by validating the protected documents against CSchema policies.These released documents are then ready tobe accessed by, for instance, XML query engines.By incorporating this validation procedure, other XML processing technologies can use CSchema as the access control module.

  4. Teaching object concepts for XML-based representations.

    Energy Technology Data Exchange (ETDEWEB)

    Kelsey, R. L. (Robert L.)

    2002-01-01

    Students learned about object-oriented design concepts and knowledge representation through the use of a set of toy blocks. The blocks represented a limited and focused domain of knowledge and one that was physical and tangible. The blocks helped the students to better visualize, communicate, and understand the domain of knowledge as well as how to perform object decomposition. The blocks were further abstracted to an engineering design kit for water park design. This helped the students to work on techniques for abstraction and conceptualization. It also led the project from tangible exercises into software and programming exercises. Students employed XML to create object-based knowledge representations and Java to use the represented knowledge. The students developed and implemented software allowing a lay user to design and create their own water slide and then to take a simulated ride on their slide.

  5. ORIENTATION: KEY TO THE OODA LOOP – THE CULTURE FACTOR

    Directory of Open Access Journals (Sweden)

    Donald A. MACCUISH

    2012-01-01

    Full Text Available The late Colonel John Boyd developed what he called the OODA-Loop as both a learning and decision making model to help us better understand how we make decisions and learn. His OODA-Loop model consists of non-sequential elements: Observe – Orient – Decide – Action. He contended if one could cycle through these phases quicker and more accurately than one’s adversary you could then get inside your adversary’s OODA-Loop and “win”. The key to the OODA-Loop he noted is Orientation. He only drew one diagram of his OODA-Loop. Only in the Orientation phase did he elaborate component elements. These elements are: Cultural Traditions, Genetic Heritage, Analysis/Synthesis, New Information, and Previous Experience. All of these elements he contended are interconnected. Thus, the interaction of all these factors effects how we orient ourselves to the situation at hand. In this article I will share my view of the “Culture Factor” in Orientation.

  6. An introduction to XML query processing and keyword search

    CERN Document Server

    Lu, Jiaheng

    2013-01-01

    This book systematically and comprehensively covers the latest advances in XML data searching. It presents an extensive overview of the current query processing and keyword search techniques on XML data.

  7. Application of XML in real-time data warehouse

    Science.gov (United States)

    Zhao, Yanhong; Wang, Beizhan; Liu, Lizhao; Ye, Su

    2009-07-01

    At present, XML is one of the most widely-used technologies of data-describing and data-exchanging, and the needs for real-time data make real-time data warehouse a popular area in the research of data warehouse. What effects can we have if we apply XML technology to the research of real-time data warehouse? XML technology solves many technologic problems which are impossible to be addressed in traditional real-time data warehouse, and realize the integration of OLAP (On-line Analytical Processing) and OLTP (Online transaction processing) environment. Then real-time data warehouse can truly be called "real time".

  8. Realization Of Algebraic Processor For XML Documents Processing

    International Nuclear Information System (INIS)

    Georgiev, Bozhidar; Georgieva, Adriana

    2010-01-01

    In this paper, are presented some possibilities concerning the implementation of an algebraic method for XML hierarchical data processing which makes faster the XML search mechanism. Here is offered a different point of view for creation of advanced algebraic processor (with all necessary software tools and programming modules respectively). Therefore, this nontraditional approach for fast XML navigation with the presented algebraic processor may help to build an easier user-friendly interface provided XML transformations, which can avoid the difficulties in the complicated language constructions of XSL, XSLT and XPath. This approach allows comparatively simple search of XML hierarchical data by means of the following types of functions: specification functions and so named build-in functions. The choice of programming language Java may appear strange at first, but it isn't when you consider that the applications can run on different kinds of computers. The specific search mechanism based on the linear algebra theory is faster in comparison with MSXML parsers (on the basis of the developed examples with about 30%). Actually, there exists the possibility for creating new software tools based on the linear algebra theory, which cover the whole navigation and search techniques characterizing XSLT/XPath. The proposed method is able to replace more complicated operations in other SOA components.

  9. A Runtime System for XML Transformations in Java

    DEFF Research Database (Denmark)

    Christensen, Aske Simon; Kirkegaard, Christian; Møller, Anders

    2004-01-01

    We show that it is possible to extend a general-purpose programming language with a convenient high-level data-type for manipulating XML documents while permitting (1) precise static analysis for guaranteeing validity of the constructed XML documents relative to the given DTD schemas, and (2...

  10. Generando datos XML a partir de bases de datos relacionales

    OpenAIRE

    Migani, Silvina; Correa, Carlos; Vera, Cristina; Romera, Liliana

    2012-01-01

    El lenguaje XML, los lenguajes que permiten manipular datos XML, y su impacto en el mundo de las bases de datos, es el área donde este proyecto se desarrolla. Surge como una iniciativa de docentes del área bases de datos, con la finalidad de profundizar en el estudio de XML y experimentar motores de bases de datos que lo soportan.

  11. Experimental Evaluation of Processing Time for the Synchronization of XML-Based Business Objects

    Science.gov (United States)

    Ameling, Michael; Wolf, Bernhard; Springer, Thomas; Schill, Alexander

    Business objects (BOs) are data containers for complex data structures used in business applications such as Supply Chain Management and Customer Relationship Management. Due to the replication of application logic, multiple copies of BOs are created which have to be synchronized and updated. This is a complex and time consuming task because BOs rigorously vary in their structure according to the distribution, number and size of elements. Since BOs are internally represented as XML documents, the parsing of XML is one major cost factor which has to be considered for minimizing the processing time during synchronization. The prediction of the parsing time for BOs is an significant property for the selection of an efficient synchronization mechanism. In this paper, we present a method to evaluate the influence of the structure of BOs on their parsing time. The results of our experimental evaluation incorporating four different XML parsers examine the dependencies between the distribution of elements and the parsing time. Finally, a general cost model will be validated and simplified according to the results of the experimental setup.

  12. XML, Ontologies, and Their Clinical Applications.

    Science.gov (United States)

    Yu, Chunjiang; Shen, Bairong

    2016-01-01

    The development of information technology has resulted in its penetration into every area of clinical research. Various clinical systems have been developed, which produce increasing volumes of clinical data. However, saving, exchanging, querying, and exploiting these data are challenging issues. The development of Extensible Markup Language (XML) has allowed the generation of flexible information formats to facilitate the electronic sharing of structured data via networks, and it has been used widely for clinical data processing. In particular, XML is very useful in the fields of data standardization, data exchange, and data integration. Moreover, ontologies have been attracting increased attention in various clinical fields in recent years. An ontology is the basic level of a knowledge representation scheme, and various ontology repositories have been developed, such as Gene Ontology and BioPortal. The creation of these standardized repositories greatly facilitates clinical research in related fields. In this chapter, we discuss the basic concepts of XML and ontologies, as well as their clinical applications.

  13. XML Based Scientific Data Management Facility

    Science.gov (United States)

    Mehrotra, P.; Zubair, M.; Bushnell, Dennis M. (Technical Monitor)

    2002-01-01

    The World Wide Web consortium has developed an Extensible Markup Language (XML) to support the building of better information management infrastructures. The scientific computing community realizing the benefits of XML has designed markup languages for scientific data. In this paper, we propose a XML based scientific data management ,facility, XDMF. The project is motivated by the fact that even though a lot of scientific data is being generated, it is not being shared because of lack of standards and infrastructure support for discovering and transforming the data. The proposed data management facility can be used to discover the scientific data itself, the transformation functions, and also for applying the required transformations. We have built a prototype system of the proposed data management facility that can work on different platforms. We have implemented the system using Java, and Apache XSLT engine Xalan. To support remote data and transformation functions, we had to extend the XSLT specification and the Xalan package.

  14. Interpreting XML documents via an RDF schema ontology

    NARCIS (Netherlands)

    Klein, Michel

    2002-01-01

    Many business documents are represented in XML. However XML only describes the structure of data, not its meaning. The meaning of data is required for advanced automated processing, as is envisaged in the "Semantic Web". Ontologies are often used to describe the meaning of data items. Many ontology

  15. ECG and XML: an instance of a possible XML schema for the ECG telemonitoring.

    Science.gov (United States)

    Di Giacomo, Paola; Ricci, Fabrizio L

    2005-03-01

    Management of many types of chronic diseases relies heavily on patients' self-monitoring of their disease conditions. In recent years, Internet-based home telemonitoring systems allowing transmission of patient data to a central database and offering immediate access to the data by the care providers have become available. The adoption of Extensible Mark-up Language (XML) as a W3C standard has generated considerable interest in the potential value of this language in health informatics. However, the telemonitoring systems often work with only one or a few types of medical devices. This is because different medical devices produce different types of data, and the existing telemonitoring systems are generally built around a proprietary data schema. In this paper, we describe a generic data schema for a telemonitoring system that is applicable to different types of medical devices and different diseases, and then we present an architecture for the exchange of clinical information as data, signals of telemonitoring and clinical reports in the XML standard, up-to-date information in each electronic patient record and integration in real time with the information collected during the telemonitoring activities in the XML schema, between all the structures involved in the healthcare process of the patient.

  16. Creating preservation metadata from XML-metadata profiles

    Science.gov (United States)

    Ulbricht, Damian; Bertelmann, Roland; Gebauer, Petra; Hasler, Tim; Klump, Jens; Kirchner, Ingo; Peters-Kottig, Wolfgang; Mettig, Nora; Rusch, Beate

    2014-05-01

    Metadata Encoding and Transmission Standard (METS). To find datasets in future portals and to make use of this data in own scientific work, proper selection of discovery metadata and application metadata is very important. Some XML-metadata profiles are not suitable for preservation, because version changes are very fast and make it nearly impossible to automate the migration. For other XML-metadata profiles schema definitions are changed after publication of the profile or the schema definitions become inaccessible, which might cause problems during validation of the metadata inside the preservation system [2]. Some metadata profiles are not used widely enough and might not even exist in the future. Eventually, discovery and application metadata have to be embedded into the mdWrap-subtree of the METS-XML. [1] http://www.archivematica.org [2] http://dx.doi.org/10.2218/ijdc.v7i1.215

  17. Algebra-Based Optimization of XML-Extended OLAP Queries

    DEFF Research Database (Denmark)

    Yin, Xuepeng; Pedersen, Torben Bach

    2006-01-01

    In today’s OLAP systems, integrating fast changing data physically into a cube is complex and time-consuming. Our solution, the “OLAP-XML Federation System,” makes it possible to reference the fast changing data in XML format in OLAP queries without physical integration. In this paper, we introduce...

  18. The XSD-Builder Specification Language—Toward a Semantic View of XML Schema Definition

    Science.gov (United States)

    Fong, Joseph; Cheung, San Kuen

    In the present database market, XML database model is a main structure for the forthcoming database system in the Internet environment. As a conceptual schema of XML database, XML Model has its limitation on presenting its data semantics. System analyst has no toolset for modeling and analyzing XML system. We apply XML Tree Model (shown in Figure 2) as a conceptual schema of XML database to model and analyze the structure of an XML database. It is important not only for visualizing, specifying, and documenting structural models, but also for constructing executable systems. The tree model represents inter-relationship among elements inside different logical schema such as XML Schema Definition (XSD), DTD, Schematron, XDR, SOX, and DSD (shown in Figure 1, an explanation of the terms in the figure are shown in Table 1). The XSD-Builder consists of XML Tree Model, source language, translator, and XSD. The source language is called XSD-Source which is mainly for providing an environment with concept of user friendliness while writing an XSD. The source language will consequently be translated by XSD-Translator. Output of XSD-Translator is an XSD which is our target and is called as an object language.

  19. Achieving Adaptivity For OLAP-XML Federations

    DEFF Research Database (Denmark)

    Pedersen, D.; Pedersen, Torben Bach

    2003-01-01

    Motivated by the need for more flexible OLAP systems, this paper presents the results of work on logical integration of external data in OLAP databases, carried out in cooperation between the Danish OLAP client vendor \\targit and Aalborg University. Flexibility is ensured by supporting XML......'s ability to adapt to changes in its surroundings. This paper describes the potential problems that may interrupt the operation of the integration system, in particular those caused by the often autonomous and unreliable nature of external XML data sources, and methods for handling these problems...

  20. Work orders management based on XML file in printing

    Directory of Open Access Journals (Sweden)

    Ran Peipei

    2018-01-01

    Full Text Available The Extensible Markup Language (XML technology is increasingly used in various field, if it’s used to express the information of work orders will improve efficiency for management and production. According to the features, we introduce the technology of management for work orders and get a XML file through the Document Object Model (DOM technology in the paper. When we need the information to conduct production, parsing the XML file and save the information in database, this is beneficial to the preserve and modify for information.

  1. XML as a standard I/O data format in scientific software development

    International Nuclear Information System (INIS)

    Song Tianming; Yang Jiamin; Yi Rongqing

    2010-01-01

    XML is an open standard data format with strict syntax rules, which is widely used in large-scale software development. It is adopted as I/O file format in the development of SpectroSim, a simulation and data-processing system for soft x-ray spectrometer used in ICF experiments. XML data that describe spectrometer configurations, schema codes that define syntax rules for XML and report generation technique for visualization of XML data are introduced. The characteristics of XML such as the capability to express structured information, self-descriptive feature, automation of visualization are explained with examples, and its feasibility as a standard scientific I/O data file format is discussed. (authors)

  2. XML Schema Guide for Primary CDR Submissions

    Science.gov (United States)

    This document presents the extensible markup language (XML) schema guide for the Office of Pollution Prevention and Toxics’ (OPPT) e-CDRweb tool. E-CDRweb is the electronic, web-based tool provided by Environmental Protection Agency (EPA) for the submission of Chemical Data Reporting (CDR) information. This document provides the user with tips and guidance on correctly using the version 1.7 XML schema. Please note that the order of the elements must match the schema.

  3. Adaptive Hypermedia Educational System Based on XML Technologies.

    Science.gov (United States)

    Baek, Yeongtae; Wang, Changjong; Lee, Sehoon

    This paper proposes an adaptive hypermedia educational system using XML technologies, such as XML, XSL, XSLT, and XLink. Adaptive systems are capable of altering the presentation of the content of the hypermedia on the basis of a dynamic understanding of the individual user. The user profile can be collected in a user model, while the knowledge…

  4. Using XML to Separate Content from the Presentation Software in eLearning Applications

    Science.gov (United States)

    Merrill, Paul F.

    2005-01-01

    This paper has shown how XML (extensible Markup Language) can be used to mark up content. Since XML documents, with meaningful tags, can be interpreted easily by humans as well as computers, they are ideal for the interchange of information. Because XML tags can be defined by an individual or organization, XML documents have proven useful in a…

  5. An XML-Based Protocol for Distributed Event Services

    Science.gov (United States)

    Smith, Warren; Gunter, Dan; Quesnel, Darcy; Biegel, Bryan (Technical Monitor)

    2001-01-01

    This viewgraph presentation provides information on the application of an XML (extensible mark-up language)-based protocol to the developing field of distributed processing by way of a computational grid which resembles an electric power grid. XML tags would be used to transmit events between the participants of a transaction, namely, the consumer and the producer of the grid scheme.

  6. Semantic reasoning with XML-based biomedical information models.

    Science.gov (United States)

    O'Connor, Martin J; Das, Amar

    2010-01-01

    The Extensible Markup Language (XML) is increasingly being used for biomedical data exchange. The parallel growth in the use of ontologies in biomedicine presents opportunities for combining the two technologies to leverage the semantic reasoning services provided by ontology-based tools. There are currently no standardized approaches for taking XML-encoded biomedical information models and representing and reasoning with them using ontologies. To address this shortcoming, we have developed a workflow and a suite of tools for transforming XML-based information models into domain ontologies encoded using OWL. In this study, we applied semantics reasoning methods to these ontologies to automatically generate domain-level inferences. We successfully used these methods to develop semantic reasoning methods for information models in the HIV and radiological image domains.

  7. Streaming-based verification of XML signatures in SOAP messages

    DEFF Research Database (Denmark)

    Somorovsky, Juraj; Jensen, Meiko; Schwenk, Jörg

    2010-01-01

    approach for XML processing, the Web Services servers easily become a target of Denial-of-Service attacks. We present a solution for these problems: an external streaming-based WS-Security Gateway. Our implementation is capable of processing XML Signatures in SOAP messages using a streaming-based approach...

  8. The Format Converting/Transfer Agent and Repository System based on ebXML

    Directory of Open Access Journals (Sweden)

    KyeongRim Ahn

    2004-12-01

    Full Text Available As introducing XML in EC-environment, various document formats have been used due to XML characteristic. Also, other document format except XML have been used to exchange EC-related information. That is, as increasing trading partner, as increasing exchanged document format and business processing being complex. So, management difficulty and duplication problem happened as trading partners increasing. And, they want to change plural business workflow to general and uniform form as defining and arranging BP(Business Process. Therefore, in this paper, we define XML as future document standard agreement and discuss about service system architecture and Repository. Repository stores and manages document standard, information related to Business Processing, Messaging Profile, and so on. Repository structure is designed to cover various XML standards. Also, we design system to support ebXML communication protocol, MSH, as well as traditional communication protocol, such as X.25, X.400, etc. and implement to exchange information via FTP.

  9. Decision-cache based XACML authorisation and anonymisation for XML documents

    OpenAIRE

    Ulltveit-Moe, Nils; Oleshchuk, Vladimir A

    2012-01-01

    Author's version of an article in the journal: Computer Standards and Interfaces. Also available from the publisher at: http://dx.doi.org/10.1016/j.csi.2011.10.007 This paper describes a decision cache for the eXtensible Access Control Markup Language (XACML) that supports fine-grained authorisation and anonymisation of XML based messages and documents down to XML attribute and element level. The decision cache is implemented as an XACML obligation service, where a specification of the XML...

  10. XML Schema Guide for Secondary CDR Submissions

    Science.gov (United States)

    This document presents the extensible markup language (XML) schema guide for the Office of Pollution Prevention and Toxics’ (OPPT) e-CDRweb tool. E-CDRweb is the electronic, web-based tool provided by Environmental Protection Agency (EPA) for the submission of Chemical Data Reporting (CDR) information. This document provides the user with tips and guidance on correctly using the version 1.1 XML schema for the Joint Submission Form. Please note that the order of the elements must match the schema.

  11. Integrity Checking and Maintenance with Active Rules in XML Databases

    DEFF Research Database (Denmark)

    Christiansen, Henning; Rekouts, Maria

    2007-01-01

    While specification languages for integrity constraints for XML data have been considered in the literature, actual technologies and methodologies for checking and maintaining integrity are still in their infancy. Triggers, or active rules, which are widely used in previous technologies for the p...... updates, the method indicates trigger conditions and correctness criteria to be met by the trigger code supplied by a developer or possibly automatic methods. We show examples developed in the Sedna XML database system which provides a running implementation of XML triggers....

  12. Orientation selectivity of synaptic input to neurons in mouse and cat primary visual cortex.

    Science.gov (United States)

    Tan, Andrew Y Y; Brown, Brandon D; Scholl, Benjamin; Mohanty, Deepankar; Priebe, Nicholas J

    2011-08-24

    Primary visual cortex (V1) is the site at which orientation selectivity emerges in mammals: visual thalamus afferents to V1 respond equally to all stimulus orientations, whereas their target V1 neurons respond selectively to stimulus orientation. The emergence of orientation selectivity in V1 has long served as a model for investigating cortical computation. Recent evidence for orientation selectivity in mouse V1 opens cortical computation to dissection by genetic and imaging tools, but also raises two essential questions: (1) How does orientation selectivity in mouse V1 neurons compare with that in previously described species? (2) What is the synaptic basis for orientation selectivity in mouse V1? A comparison of orientation selectivity in mouse and in cat, where such measures have traditionally been made, reveals that orientation selectivity in mouse V1 is weaker than in cat V1, but that spike threshold plays a similar role in narrowing selectivity between membrane potential and spike rate. To uncover the synaptic basis for orientation selectivity, we made whole-cell recordings in vivo from mouse V1 neurons, comparing neuronal input selectivity-based on membrane potential, synaptic excitation, and synaptic inhibition-to output selectivity based on spiking. We found that a neuron's excitatory and inhibitory inputs are selective for the same stimulus orientations as is its membrane potential response, and that inhibitory selectivity is not broader than excitatory selectivity. Inhibition has different dynamics than excitation, adapting more rapidly. In neurons with temporally modulated responses, the timing of excitation and inhibition was different in mice and cats.

  13. Web-based infectious disease reporting using XML forms.

    Science.gov (United States)

    Liu, Danhong; Wang, Xia; Pan, Feng; Xu, Yongyong; Yang, Peng; Rao, Keqin

    2008-09-01

    Exploring solutions for infectious disease information sharing among hospital and public health information systems is imperative to the improvement of disease surveillance and emergent response. This paper aimed at developing a method to directly transmit real-time data of notifiable infectious diseases from hospital information systems to public health information systems on the Internet by using a standard eXtensible Markup Language (XML) format. The mechanism and work flow by which notifiable infectious disease data are created, reported and used at health agencies in China was evaluated. The capacity of all participating providers to use electronic data interchange to submit transactions of data required for the notifiable infectious disease reporting was assessed. The minimum data set at national level that is required for reporting for national notifiable infectious disease surveillance was determined. The standards and techniques available worldwide for electronic health data interchange, such as XML, HL7 messaging, CDA and ATSM CCR, etc. were reviewed and compared, and an XML implementation format needed for this purpose was defined for hospitals that are able to access the Internet to provide a complete infectious disease reporting. There are 18,703 county or city hospitals in China. All of them have access to basic information infrastructures including computers, e-mail and the Internet. Nearly 10,000 hospitals possess hospital information systems used for electronically recording, retrieving and manipulating patients' information. These systems collect 23 data items required in the minimum data set for national notifiable infectious disease reporting. In order to transmit these data items to the disease surveillance system and local health information systems instantly and without duplication of data input, an XML schema and a set of standard data elements were developed to define the content, structure and semantics of the data set. These standards

  14. Generating XML schemas for DICOM structured reporting templates.

    Science.gov (United States)

    Zhao, Luyin; Lee, Kwok Pun; Hu, Jingkun

    2005-01-01

    In this paper, the authors describe a methodology to transform programmatically structured reporting (SR) templates defined by the Digital Imaging and Communications for Medicine (DICOM) standard into an XML schema representation. Such schemas can be used in the creation and validation of XML-encoded SR documents that use templates. Templates are a means to put additional constraints on an SR document to promote common formats for specific reporting applications or domains. As the use of templates becomes more widespread in the production of SR documents, it is important to ensure validity of such documents. The work described in this paper is an extension of the authors' previous work on XML schema representation for DICOM SR. Therefore, this paper inherits and partially modifies the structure defined in the earlier work.

  15. A Typed Text Retrieval Query Language for XML Documents.

    Science.gov (United States)

    Colazzo, Dario; Sartiani, Carlo; Albano, Antonio; Manghi, Paolo; Ghelli, Giorgio; Lini, Luca; Paoli, Michele

    2002-01-01

    Discussion of XML focuses on a description of Tequyla-TX, a typed text retrieval query language for XML documents that can search on both content and structures. Highlights include motivations; numerous examples; word-based and char-based searches; tag-dependent full-text searches; text normalization; query algebra; data models and term language;…

  16. NeXML: rich, extensible, and verifiable representation of comparative data and metadata.

    Science.gov (United States)

    Vos, Rutger A; Balhoff, James P; Caravas, Jason A; Holder, Mark T; Lapp, Hilmar; Maddison, Wayne P; Midford, Peter E; Priyam, Anurag; Sukumaran, Jeet; Xia, Xuhua; Stoltzfus, Arlin

    2012-07-01

    In scientific research, integration and synthesis require a common understanding of where data come from, how much they can be trusted, and what they may be used for. To make such an understanding computer-accessible requires standards for exchanging richly annotated data. The challenges of conveying reusable data are particularly acute in regard to evolutionary comparative analysis, which comprises an ever-expanding list of data types, methods, research aims, and subdisciplines. To facilitate interoperability in evolutionary comparative analysis, we present NeXML, an XML standard (inspired by the current standard, NEXUS) that supports exchange of richly annotated comparative data. NeXML defines syntax for operational taxonomic units, character-state matrices, and phylogenetic trees and networks. Documents can be validated unambiguously. Importantly, any data element can be annotated, to an arbitrary degree of richness, using a system that is both flexible and rigorous. We describe how the use of NeXML by the TreeBASE and Phenoscape projects satisfies user needs that cannot be satisfied with other available file formats. By relying on XML Schema Definition, the design of NeXML facilitates the development and deployment of software for processing, transforming, and querying documents. The adoption of NeXML for practical use is facilitated by the availability of (1) an online manual with code samples and a reference to all defined elements and attributes, (2) programming toolkits in most of the languages used commonly in evolutionary informatics, and (3) input-output support in several widely used software applications. An active, open, community-based development process enables future revision and expansion of NeXML.

  17. Lessons in scientific data interoperability: XML and the eMinerals project.

    Science.gov (United States)

    White, T O H; Bruin, R P; Chiang, G-T; Dove, M T; Tyer, R P; Walker, A M

    2009-03-13

    A collaborative environmental eScience project produces a broad range of data, notable as much for its diversity, in source and format, as its quantity. We find that extensible markup language (XML) and associated technologies are invaluable in managing this deluge of data. We describe Fo X, a toolkit for allowing Fortran codes to read and write XML, thus allowing existing scientific tools to be easily re-used in an XML-centric workflow.

  18. Health Topic XML File Description

    Science.gov (United States)

    ... this page: https://medlineplus.gov/xmldescription.html Health Topic XML File Description: MedlinePlus To use the sharing ... information categories assigned. Example of a Full Health Topic Record A record for a MedlinePlus health topic ...

  19. XBRL: Beyond Basic XML

    Science.gov (United States)

    VanLengen, Craig Alan

    2010-01-01

    The Securities and Exchange Commission (SEC) has recently announced a proposal that will require all public companies to report their financial data in Extensible Business Reporting Language (XBRL). XBRL is an extension of Extensible Markup Language (XML). Moving to a standard reporting format makes it easier for organizations to report the…

  20. 77 FR 28541 - Request for Comments on the Recommendation for the Disclosure of Sequence Listings Using XML...

    Science.gov (United States)

    2012-05-15

    ... the sequence part of the standard, and a second annex setting forth the Document Type Definition (DTD) for the standard. Five rounds of comment/revision have taken place since March 2011, and discussion of... patent data purposes. The XML standard also includes four qualifiers for amino acids. These feature keys...

  1. EquiX-A Search and Query Language for XML.

    Science.gov (United States)

    Cohen, Sara; Kanza, Yaron; Kogan, Yakov; Sagiv, Yehoshua; Nutt, Werner; Serebrenik, Alexander

    2002-01-01

    Describes EquiX, a search language for XML that combines querying with searching to query the data and the meta-data content of Web pages. Topics include search engines; a data model for XML documents; search query syntax; search query semantics; an algorithm for evaluating a query on a document; and indexing EquiX queries. (LRW)

  2. Semi-automatic Citation Correction with Lemon8-XML

    Directory of Open Access Journals (Sweden)

    MJ Suhonos

    2009-03-01

    Full Text Available The Lemon8-XML software application, developed by the Public Knowledge Project (PKP, provides an open-source, computer-assisted interface for reliable citation structuring and validation. Lemon8-XML combines citation parsing algorithms with freely-available online indexes such as PubMed, WorldCat, and OAIster. Fully-automated markup of entire bibliographies may be a genuine possibility using this approach. Automated markup of citations would increase bibliographic accuracy while reducing copyediting demands.

  3. Key Principles of Superfund Remedy Selection

    Science.gov (United States)

    Guidance on the primary considerations of remedy selection which are universally applicable at Superfund sites. Key guidance here include: Rules of Thumb for Superfund Remedy Selection and Role of the Baseline Risk Assessment.

  4. The SGML Standardization Framework and the Introduction of XML

    Science.gov (United States)

    Grütter, Rolf

    2000-01-01

    Extensible Markup Language (XML) is on its way to becoming a global standard for the representation, exchange, and presentation of information on the World Wide Web (WWW). More than that, XML is creating a standardization framework, in terms of an open network of meta-standards and mediators that allows for the definition of further conventions and agreements in specific business domains. Such an approach is particularly needed in the healthcare domain; XML promises to especially suit the particularities of patient records and their lifelong storage, retrieval, and exchange. At a time when change rather than steadiness is becoming the faithful feature of our society, standardization frameworks which support a diversified growth of specifications that are appropriate to the actual needs of the users are becoming more and more important; and efforts should be made to encourage this new attempt at standardization to grow in a fruitful direction. Thus, the introduction of XML reflects a standardization process which is neither exclusively based on an acknowledged standardization authority, nor a pure market standard. Instead, a consortium of companies, academic institutions, and public bodies has agreed on a common recommendation based on an existing standardization framework. The consortium's process of agreeing to a standardization framework will doubtlessly be successful in the case of XML, and it is suggested that it should be considered as a generic model for standardization processes in the future. PMID:11720931

  5. Using XML and XSLT for flexible elicitation of mental-health risk knowledge.

    Science.gov (United States)

    Buckingham, C D; Ahmed, A; Adams, A E

    2007-03-01

    Current tools for assessing risks associated with mental-health problems require assessors to make high-level judgements based on clinical experience. This paper describes how new technologies can enhance qualitative research methods to identify lower-level cues underlying these judgements, which can be collected by people without a specialist mental-health background. Content analysis of interviews with 46 multidisciplinary mental-health experts exposed the cues and their interrelationships, which were represented by a mind map using software that stores maps as XML. All 46 mind maps were integrated into a single XML knowledge structure and analysed by a Lisp program to generate quantitative information about the numbers of experts associated with each part of it. The knowledge was refined by the experts, using software developed in Flash to record their collective views within the XML itself. These views specified how the XML should be transformed by XSLT, a technology for rendering XML, which resulted in a validated hierarchical knowledge structure associating patient cues with risks. Changing knowledge elicitation requirements were accommodated by flexible transformations of XML data using XSLT, which also facilitated generation of multiple data-gathering tools suiting different assessment circumstances and levels of mental-health knowledge.

  6. Data Hiding and Security for XML Database: A TRBAC- Based Approach

    Institute of Scientific and Technical Information of China (English)

    ZHANG Wan-song; SUN Wei; LIU Da-xin

    2005-01-01

    In order to cope with varying protection granularity levels of XML (eXtensible Markup Language) documents, we propose a TXAC (Two-level XML Access Control) framework, in which an extended TRBAC (Temporal Role-Based Access Control) approach is proposed to deal with the dynamic XML data. With different system components,TXAC algorithm evaluates access requests efficiently by appropriate access control policy in dynamic web environment.The method is a flexible and powerful security system offering a multi-level access control solution.

  7. A generic framework for extracting XML data from legacy databases

    NARCIS (Netherlands)

    Thiran, Ph.; Estiévenart, F.; Hainaut, J.L.; Houben, G.J.P.M.

    2005-01-01

    This paper describes a generic framework of which semantics-based XML data can be derived from legacy databases. It consists in first recovering the conceptual schema of the database through reverse engineering techniques, and then in converting this schema, or part of it, into XML-compliant data

  8. Engineering XML Solutions Using Views

    NARCIS (Netherlands)

    Rajugan, R.; Chang, E.; Dillon, T.S.; Feng, L.

    In industrial informatics, engineering data intensive Enterprise Information Systems (EIS) is a challenging task without abstraction and partitioning. Further, the introduction of semi-structured data (namely XML) and its rapid adaptation by the commercial and industrial systems increased the

  9. Key trends in basic and application-oriented research on nanomaterials

    Energy Technology Data Exchange (ETDEWEB)

    Tretyakov, Yuri D; Goodilin, Eugene A [Department of Chemistry, M.V. Lomonosov Moscow State University, Moscow (Russian Federation)

    2009-09-30

    Key trends in basic and application-oriented research on nanomaterials are considered. It is noted that some studies are now carried out abroad and in domestic laboratories, while some other are to be initiated in the near future. It is emphasized that effective research in the field in question is possible only provided that laboratories are equipped with advanced instrumentation.

  10. Key trends in basic and application-oriented research on nanomaterials

    International Nuclear Information System (INIS)

    Tretyakov, Yuri D; Goodilin, Eugene A

    2009-01-01

    Key trends in basic and application-oriented research on nanomaterials are considered. It is noted that some studies are now carried out abroad and in domestic laboratories, while some other are to be initiated in the near future. It is emphasized that effective research in the field in question is possible only provided that laboratories are equipped with advanced instrumentation.

  11. Evaluating XML-Extended OLAP Queries Based on a Physical Algebra

    DEFF Research Database (Denmark)

    Yin, Xuepeng; Pedersen, Torben Bach

    2006-01-01

    . In this paper, we extend previous work on the logical federation of OLAP and XML data sources by presenting a simplified query semantics, a physical query algebra and a robust OLAP-XML query engine as well as the query evaluation techniques. Performance experiments with a prototypical implementation suggest...

  12. Evaluating XML-Extended OLAP Queries Based on a Physical Algebra

    DEFF Research Database (Denmark)

    Yin, Xuepeng; Pedersen, Torben Bach

    2004-01-01

    is desirable. In this paper, we extend previous work on the logical federation of OLAP and XML data sources by presenting a simplified query semantics,a physical query algebra and a robust OLAP-XML query engine.Performance experiments with a prototypical implementation suggest that the performance for OLAP...

  13. Synaptic Mechanisms Generating Orientation Selectivity in the ON Pathway of the Rabbit Retina.

    Science.gov (United States)

    Venkataramani, Sowmya; Taylor, W Rowland

    2016-03-16

    Neurons that signal the orientation of edges within the visual field have been widely studied in primary visual cortex. Much less is known about the mechanisms of orientation selectivity that arise earlier in the visual stream. Here we examine the synaptic and morphological properties of a subtype of orientation-selective ganglion cell in the rabbit retina. The receptive field has an excitatory ON center, flanked by excitatory OFF regions, a structure similar to simple cell receptive fields in primary visual cortex. Examination of the light-evoked postsynaptic currents in these ON-type orientation-selective ganglion cells (ON-OSGCs) reveals that synaptic input is mediated almost exclusively through the ON pathway. Orientation selectivity is generated by larger excitation for preferred relative to orthogonal stimuli, and conversely larger inhibition for orthogonal relative to preferred stimuli. Excitatory orientation selectivity arises in part from the morphology of the dendritic arbors. Blocking GABAA receptors reduces orientation selectivity of the inhibitory synaptic inputs and the spiking responses. Negative contrast stimuli in the flanking regions produce orientation-selective excitation in part by disinhibition of a tonic NMDA receptor-mediated input arising from ON bipolar cells. Comparison with earlier studies of OFF-type OSGCs indicates that diverse synaptic circuits have evolved in the retina to detect the orientation of edges in the visual input. A core goal for visual neuroscientists is to understand how neural circuits at each stage of the visual system extract and encode features from the visual scene. This study documents a novel type of orientation-selective ganglion cell in the retina and shows that the receptive field structure is remarkably similar to that of simple cells in primary visual cortex. However, the data indicate that, unlike in the cortex, orientation selectivity in the retina depends on the activity of inhibitory interneurons. The

  14. A Study of XML in the Library Science Curriculum in Taiwan and South East Asia

    Science.gov (United States)

    Chang, Naicheng; Huang, Yuhui; Hopkinson, Alan

    2011-01-01

    This paper aims to investigate the current XML-related courses available in 96 LIS schools in South East Asia and Taiwan's 9 LIS schools. Also, this study investigates the linkage of library school graduates in Taiwan who took different levels of XML-related education (that is XML arranged as an individual course or XML arranged as a section unit…

  15. Modulation of orientation-selective neurons by motion: when additive, when multiplicative?

    Directory of Open Access Journals (Sweden)

    Torsten eLüdge

    2014-06-01

    Full Text Available The recurrent interaction among orientation-selective neurons in the primary visual cortex (V1 is suited to enhance contours in a noisy visual scene. Motion is known to have a strong pop-up effect in perceiving contours, but how motion-sensitive neurons in V1 support contour detection remains vastly elusive. Here we suggest how the various types of motion-sensitive neurons observed in V1 should be wired together in a micro-circuitry to optimally extract contours in the visual scene. Motion-sensitive neurons can be selective about the direction of motion occurring at some spot or respond equally to all directions (pandirectional. We show that, in the light of figure-ground segregation, direction-selective motion neurons should additively modulate the corresponding orientation-selective neurons with preferred orientation orthogonal to the motion direction. In turn, to maximally enhance contours, pandirectional motion neurons should multiplicatively modulate all orientation-selective neurons with co-localized receptive fields. This multiplicative modulation amplifies the local V1-circuitry among co-aligned orientation-selective neurons for detecting elongated contours. We suggest that the additive modulation by direction- specific motion neurons is achieved through synaptic projections to the somatic region, and the multiplicative modulation by pandirectional motion neurons through projections to the apical region of orientation-specific pyramidal neurons. For the purpose of contour detection, the V1- intrinsic integration of motion information is advantageous over a downstream integration as it exploits the recurrent V1-circuitry designed for that task.

  16. Applying Analogical Reasoning Techniques for Teaching XML Document Querying Skills in Database Classes

    Science.gov (United States)

    Mitri, Michel

    2012-01-01

    XML has become the most ubiquitous format for exchange of data between applications running on the Internet. Most Web Services provide their information to clients in the form of XML. The ability to process complex XML documents in order to extract relevant information is becoming as important a skill for IS students to master as querying…

  17. Enterprise Architecture Analysis with XML

    NARCIS (Netherlands)

    F.S. de Boer (Frank); M.M. Bonsangue (Marcello); J.F. Jacob (Joost); A. Stam; L.W.N. van der Torre (Leon)

    2005-01-01

    htmlabstractThis paper shows how XML can be used for static and dynamic analysis of architectures. Our analysis is based on the distinction between symbolic and semantic models of architectures. The core of a symbolic model consists of its signature that specifies symbolically its structural

  18. Static Analysis for Dynamic XML

    DEFF Research Database (Denmark)

    Christensen, Aske Simon; Møller, Anders; Schwartzbach, Michael Ignatieff

    2002-01-01

    We describe the summary graph lattice for dataflow analysis of programs that dynamically construct XML documents. Summary graphs have successfully been used to provide static guarantees in the JWIG language for programming interactive Web services. In particular, the JWIG compiler is able to check...

  19. Representing nested semantic information in a linear string of text using XML.

    OpenAIRE

    Krauthammer, Michael; Johnson, Stephen B.; Hripcsak, George; Campbell, David A.; Friedman, Carol

    2002-01-01

    XML has been widely adopted as an important data interchange language. The structure of XML enables sharing of data elements with variable degrees of nesting as long as the elements are grouped in a strict tree-like fashion. This requirement potentially restricts the usefulness of XML for marking up written text, which often includes features that do not properly nest within other features. We encountered this problem while marking up medical text with structured semantic information from a N...

  20. The Design Space of Type Checkers for XML Transformation Languages

    DEFF Research Database (Denmark)

    Møller, Anders; Schwartzbach, Michael Ignatieff

    2005-01-01

    We survey work on statically type checking XML transformations, covering a wide range of notations and ambitions. The concept of type may vary from idealizations of DTD to full-blown XML Schema or even more expressive formalisms. The notion of transformation may vary from clean and simple...... transductions to domain-specific languages or integration of XML in general-purpose programming languages. Type annotations can be either explicit or implicit, and type checking ranges from exact decidability to pragmatic approximations. We characterize and evaluate existing tools in this design space......, including a recent result of the authors providing practical type checking of full unannotated XSLT 1.0 stylesheets given general DTDs that describe the input and output languages....

  1. Distribution of immunodeficiency fact files with XML – from Web to WAP

    Directory of Open Access Journals (Sweden)

    Riikonen Pentti

    2005-06-01

    Full Text Available Abstract Background Although biomedical information is growing rapidly, it is difficult to find and retrieve validated data especially for rare hereditary diseases. There is an increased need for services capable of integrating and validating information as well as proving it in a logically organized structure. A XML-based language enables creation of open source databases for storage, maintenance and delivery for different platforms. Methods Here we present a new data model called fact file and an XML-based specification Inherited Disease Markup Language (IDML, that were developed to facilitate disease information integration, storage and exchange. The data model was applied to primary immunodeficiencies, but it can be used for any hereditary disease. Fact files integrate biomedical, genetic and clinical information related to hereditary diseases. Results IDML and fact files were used to build a comprehensive Web and WAP accessible knowledge base ImmunoDeficiency Resource (IDR available at http://bioinf.uta.fi/idr/. A fact file is a user oriented user interface, which serves as a starting point to explore information on hereditary diseases. Conclusion The IDML enables the seamless integration and presentation of genetic and disease information resources in the Internet. IDML can be used to build information services for all kinds of inherited diseases. The open source specification and related programs are available at http://bioinf.uta.fi/idml/.

  2. Managing XML Data to optimize Performance into Object-Relational Databases

    Directory of Open Access Journals (Sweden)

    Iuliana BOTHA

    2011-06-01

    Full Text Available This paper propose some possibilities for manage XML data in order to optimize performance into object-relational databases. It is detailed the possibility of storing XML data into such databases, using for exemplification an Oracle database and there are tested some optimizing techniques of the queries over XMLType tables, like indexing and partitioning tables.

  3. Adding XML to the MIS Curriculum: Lessons from the Classroom

    Science.gov (United States)

    Wagner, William P.; Pant, Vik; Hilken, Ralph

    2008-01-01

    eXtensible Markup Language (XML) is a new technology that is currently being extolled by many industry experts and software vendors. Potentially it represents a platform independent language for sharing information over networks in a way that is much more seamless than with previous technologies. It is extensible in that XML serves as a "meta"…

  4. The XBabelPhish MAGE-ML and XML translator.

    Science.gov (United States)

    Maier, Don; Wymore, Farrell; Sherlock, Gavin; Ball, Catherine A

    2008-01-18

    MAGE-ML has been promoted as a standard format for describing microarray experiments and the data they produce. Two characteristics of the MAGE-ML format compromise its use as a universal standard: First, MAGE-ML files are exceptionally large - too large to be easily read by most people, and often too large to be read by most software programs. Second, the MAGE-ML standard permits many ways of representing the same information. As a result, different producers of MAGE-ML create different documents describing the same experiment and its data. Recognizing all the variants is an unwieldy software engineering task, resulting in software packages that can read and process MAGE-ML from some, but not all producers. This Tower of MAGE-ML Babel bars the unencumbered exchange of microarray experiment descriptions couched in MAGE-ML. We have developed XBabelPhish - an XQuery-based technology for translating one MAGE-ML variant into another. XBabelPhish's use is not restricted to translating MAGE-ML documents. It can transform XML files independent of their DTD, XML schema, or semantic content. Moreover, it is designed to work on very large (> 200 Mb.) files, which are common in the world of MAGE-ML. XBabelPhish provides a way to inter-translate MAGE-ML variants for improved interchange of microarray experiment information. More generally, it can be used to transform most XML files, including very large ones that exceed the capacity of most XML tools.

  5. Scripting XML with Generic Haskell

    NARCIS (Netherlands)

    Atanassow, F.; Clarke, D.; Jeuring, J.T.

    2003-01-01

    A generic program is written once and works on values of many data types. Generic Haskell is a recent extension of the functional programming language Haskell that supports generic programming. This paper discusses how Generic Haskell can be used to implement XML tools whose behaviour depends on

  6. Scripting XML with Generic Haskell

    NARCIS (Netherlands)

    Atanassow, F.; Clarke, D.; Jeuring, J.T.

    2007-01-01

    A generic program is written once and works on values of many data types. Generic Haskell is a recent extension of the functional programming language Haskell that supports generic programming. This paper discusses how Generic Haskell can be used to implement XML tools whose behaviour depends on

  7. Single event monitoring system based on Java 3D and XML data binding

    International Nuclear Information System (INIS)

    Wang Liang; Chinese Academy of Sciences, Beijing; Zhu Kejun; Zhao Jingwei

    2007-01-01

    Online single event monitoring is important to BESIII DAQ System. Java3D is extension of Java Language in 3D technology, XML data binding is more efficient to handle XML document than SAX and DOM. This paper mainly introduce the implementation of BESIII single event monitoring system with Java3D and XML data binding, and interface for track fitting software with JNI technology. (authors)

  8. Representing nested semantic information in a linear string of text using XML.

    Science.gov (United States)

    Krauthammer, Michael; Johnson, Stephen B; Hripcsak, George; Campbell, David A; Friedman, Carol

    2002-01-01

    XML has been widely adopted as an important data interchange language. The structure of XML enables sharing of data elements with variable degrees of nesting as long as the elements are grouped in a strict tree-like fashion. This requirement potentially restricts the usefulness of XML for marking up written text, which often includes features that do not properly nest within other features. We encountered this problem while marking up medical text with structured semantic information from a Natural Language Processor. Traditional approaches to this problem separate the structured information from the actual text mark up. This paper introduces an alternative solution, which tightly integrates the semantic structure with the text. The resulting XML markup preserves the linearity of the medical texts and can therefore be easily expanded with additional types of information.

  9. XML-based approaches for the integration of heterogeneous bio-molecular data.

    Science.gov (United States)

    Mesiti, Marco; Jiménez-Ruiz, Ernesto; Sanz, Ismael; Berlanga-Llavori, Rafael; Perlasca, Paolo; Valentini, Giorgio; Manset, David

    2009-10-15

    The today's public database infrastructure spans a very large collection of heterogeneous biological data, opening new opportunities for molecular biology, bio-medical and bioinformatics research, but raising also new problems for their integration and computational processing. In this paper we survey the most interesting and novel approaches for the representation, integration and management of different kinds of biological data by exploiting XML and the related recommendations and approaches. Moreover, we present new and interesting cutting edge approaches for the appropriate management of heterogeneous biological data represented through XML. XML has succeeded in the integration of heterogeneous biomolecular information, and has established itself as the syntactic glue for biological data sources. Nevertheless, a large variety of XML-based data formats have been proposed, thus resulting in a difficult effective integration of bioinformatics data schemes. The adoption of a few semantic-rich standard formats is urgent to achieve a seamless integration of the current biological resources.

  10. XML Namespace與RDF的基本概念 | The Basic Concepts of XML Namespace and RDF

    Directory of Open Access Journals (Sweden)

    陳嵩榮 Sung-Jung Chen

    1999-04-01

    Full Text Available

    頁次:88-100

    XML Namespaces機制允許在XML文件中以一個URI 來限定元素名稱或屬性名稱,提供一種在Web上具有唯一性的命名方式,以解決不同的XML文件元素名稱與屬性名稱可能衝突的問題;RDF 主要是為Metadata在Web 上的各種應用提供一個基礎結構,使應用程式之間能夠在Web上交換Metadata,以促進網路資源的自動化處理。本文透過一連串的實例來介紹XML Namespace與RDF的資料模型及語法。

    XML namespaces provide a simple method for qualifying element and attribute names used in XML documents by associating them with namespaces identified by URI references. RDF is a foundation for processing metadata. It provides interoperability between

  11. Towards an Ontology for the Global Geodynamics Project: Automated Extraction of Resource Descriptions from an XML-Based Data Model

    Science.gov (United States)

    Lumb, L. I.; Aldridge, K. D.

    2005-12-01

    Using the Earth Science Markup Language (ESML), an XML-based data model for the Global Geodynamics Project (GGP) was recently introduced [Lumb & Aldridge, Proc. HPCS 2005, Kotsireas & Stacey, eds., IEEE, 2005, 216-222]. This data model possesses several key attributes -i.e., it: makes use of XML schema; supports semi-structured ASCII format files; includes Earth Science affinities; and is on track for compliance with emerging Grid computing standards (e.g., the Global Grid Forum's Data Format Description Language, DFDL). Favorable attributes notwithstanding, metadata (i.e., data about data) was identified [Lumb & Aldridge, 2005] as a key challenge for progress in enabling the GGP for Grid computing. Even in projects of small-to-medium scale like the GGP, the manual introduction of metadata has the potential to be the rate-determining metric for progress. Fortunately, an automated approach for metadata introduction has recently emerged. Based on Gleaning Resource Descriptions from Dialects of Languages (GRDDL, http://www.w3.org/2004/01/rdxh/spec), this bottom-up approach allows for the extraction of Resource Description Format (RDF) representations from the XML-based data model (i.e., the ESML representation of GGP data) subject to rules of transformation articulated via eXtensible Stylesheet Language Transformations (XSLT). In addition to introducing relationships into the GGP data model, and thereby addressing the metadata requirement, the syntax and semantics of RDF comprise a requisite for a GGP ontology - i.e., ``the common words and concepts (the meaning) used to describe and represent an area of knowledge'' [Daconta et al., The Semantic Web, Wiley, 2003]. After briefly reviewing the XML-based model for the GGP, attention focuses on the automated extraction of an RDF representation via GRDDL with XSLT-delineated templates. This bottom-up approach, in tandem with a top-down approach based on the Protege integrated development environment for ontologies (http

  12. Generic and updatable XML value indices covering equality and range lookups

    NARCIS (Netherlands)

    E. Sidirourgos (Eleftherios); P.A. Boncz (Peter)

    2008-01-01

    htmlabstractWe describe a collection of indices for XML text, element, and attribute node values that (i) consume little storage, (ii) have low maintenance overhead, (iii) permit fast equi-lookup on string values, and (iv) support range-lookup on any XML typed value (e.g., double, dateTime). The

  13. Generic and Updatable XML Value Indices Covering Equality and Range Lookups

    NARCIS (Netherlands)

    E. Sidirourgos (Eleftherios); P.A. Boncz (Peter)

    2009-01-01

    textabstractWe describe a collection of indices for XML text, element, and attribute node values that (i) consume little storage, (ii) have low maintenance overhead, (iii) permit fast equilookup on string values, and (iv) support range-lookup on any XML typed value (e.g., double, dateTime). The

  14. Data Migration between Document-Oriented and Relational Databases

    OpenAIRE

    Bogdan Walek; Cyril Klimes

    2012-01-01

    Current tools for data migration between documentoriented and relational databases have several disadvantages. We propose a new approach for data migration between documentoriented and relational databases. During data migration the relational schema of the target (relational database) is automatically created from collection of XML documents. Proposed approach is verified on data migration between document-oriented database IBM Lotus/ Notes Domino and relational database...

  15. Development Life Cycle and Tools for XML Content Models

    Energy Technology Data Exchange (ETDEWEB)

    Kulvatunyou, Boonserm [ORNL; Morris, Katherine [National Institute of Standards and Technology (NIST); Buhwan, Jeong [POSTECH University, South Korea; Goyal, Puja [National Institute of Standards and Technology (NIST)

    2004-11-01

    Many integration projects today rely on shared semantic models based on standards represented using Extensible Mark up Language (XML) technologies. Shared semantic models typically evolve and require maintenance. In addition, to promote interoperability and reduce integration costs, the shared semantics should be reused as much as possible. Semantic components must be consistent and valid in terms of agreed upon standards and guidelines. In this paper, we describe an activity model for creation, use, and maintenance of a shared semantic model that is coherent and supports efficient enterprise integration. We then use this activity model to frame our research and the development of tools to support those activities. We provide overviews of these tools primarily in the context of the W3C XML Schema. At the present, we focus our work on the W3C XML Schema as the representation of choice, due to its extensive adoption by industry.

  16. Computer-assisted selection of coplanar beam orientations in intensity-modulated radiation therapy

    Energy Technology Data Exchange (ETDEWEB)

    Pugachev, A.; Xing, L. [Department of Radiation Oncology, Stanford University School of Medicine, Stanford, CA (United States)]. E-mail: lei@reyes.stanford.edu

    2001-09-01

    In intensity-modulated radiation therapy (IMRT), the incident beam orientations are often determined by a trial and error search. The conventional beam's-eye view (BEV) tool becomes less helpful in IMRT because it is frequently required that beams go through organs at risk (OARs) in order to achieve a compromise between the dosimetric objectives of the planning target volume (PTV) and the OARs. In this paper, we report a beam's-eye view dosimetrics (BEVD) technique to assist in the selection of beam orientations in IMRT. In our method, each beam portal is divided into a grid of beamlets. A score function is introduced to measure the 'goodness' of each beamlet at a given gantry angle. The score is determined by the maximum PTV dose deliverable by the beamlet without exceeding the tolerance doses of the OARs and normal tissue located in the path of the beamlet. The overall score of the gantry angle is given by a sum of the scores of all beamlets. For a given patient, the score function is evaluated for each possible beam orientation. The directions with the highest scores are then selected as the candidates for beam placement. This procedure is similar to the BEV approach used in conventional radiation therapy, except that the evaluation by a human is replaced by a score function to take into account the intensity modulation. This technique allows one to select beam orientations without the excessive computing overhead of computer optimization of beam orientation. It also provides useful insight into the problem of selection of beam orientation and is especially valuable for complicated cases where the PTV is surrounded by several sensitive structures and where it is difficult to select a set of 'good' beam orientations. Several two-dimensional (2D) model cases were used to test the proposed technique. The plans obtained using the BEVD-selected beam orientations were compared with the plans obtained using equiangular spaced beams. For

  17. Progress on an implementation of MIFlowCyt in XML

    Science.gov (United States)

    Leif, Robert C.; Leif, Stephanie H.

    2015-03-01

    Introduction: The International Society for Advancement of Cytometry (ISAC) Data Standards Task Force (DSTF) has created a standard for the Minimum Information about a Flow Cytometry Experiment (MIFlowCyt 1.0). The CytometryML schemas, are based in part upon the Flow Cytometry Standard and Digital Imaging and Communication (DICOM) standards. CytometryML has and will be extended and adapted to include MIFlowCyt, as well as to serve as a common standard for flow and image cytometry (digital microscopy). Methods: The MIFlowCyt data-types were created, as is the rest of CytometryML, in the XML Schema Definition Language (XSD1.1). Individual major elements of the MIFlowCyt schema were translated into XML and filled with reasonable data. A small section of the code was formatted with HTML formatting elements. Results: The differences in the amount of detail to be recorded for 1) users of standard techniques including data analysts and 2) others, such as method and device creators, laboratory and other managers, engineers, and regulatory specialists required that separate data-types be created to describe the instrument configuration and components. A very substantial part of the MIFlowCyt element that describes the Experimental Overview part of the MIFlowCyt and substantial parts of several other major elements have been developed. Conclusions: The future use of structured XML tags and web technology should facilitate searching of experimental information, its presentation, and inclusion in structured research, clinical, and regulatory documents, as well as demonstrate in publications adherence to the MIFlowCyt standard. The use of CytometryML together with XML technology should also result in the textual and numeric data being published using web technology without any change in composition. Preliminary testing indicates that CytometryML XML pages can be directly formatted with the combination of HTML and CSS.

  18. An object-oriented approach for harmonization of multimedia markup languages

    Science.gov (United States)

    Chen, Yih-Feng; Kuo, May-Chen; Sun, Xiaoming; Kuo, C.-C. Jay

    2003-12-01

    An object-oriented methodology is proposed to harmonize several different markup languages in this research. First, we adopt the Unified Modelling Language (UML) as the data model to formalize the concept and the process of the harmonization process between the eXtensible Markup Language (XML) applications. Then, we design the Harmonization eXtensible Markup Language (HXML) based on the data model and formalize the transformation between the Document Type Definitions (DTDs) of the original XML applications and HXML. The transformation between instances is also discussed. We use the harmonization of SMIL and X3D as an example to demonstrate the proposed methodology. This methodology can be generalized to various application domains.

  19. PRIDEViewer: a novel user-friendly interface to visualize PRIDE XML files.

    Science.gov (United States)

    Medina-Aunon, J Alberto; Carazo, José M; Albar, Juan Pablo

    2011-01-01

    Current standardization initiatives have greatly contributed to share the information derived by proteomics experiments. One of these initiatives is the XML-based repository PRIDE (PRoteomics IDEntification database), although an XML-based document does not appear to present a user-friendly view at the first glance. PRIDEViewer is a novel Java-based application that presents the information available in a PRIDE XML file in a user-friendly manner, facilitating the interaction among end users as well as the understanding and evaluation of the compiled information. PRIDEViewer is freely available at: http://proteo.cnb.csic.es/prideviewer/. Copyright © 2011 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  20. KNOWLEDGE AND XML BASED CAPP SYSTEM

    Institute of Scientific and Technical Information of China (English)

    ZHANG Shijie; SONG Laigang

    2006-01-01

    In order to enhance the intelligent level of system and improve the interactivity with other systems, a knowledge and XML based computer aided process planning (CAPP) system is implemented. It includes user management, bill of materials(BOM) management, knowledge based process planning, knowledge management and database maintaining sub-systems. This kind of nesting knowledge representation method the system provided can represent complicated arithmetic and logical relationship to deal with process planning tasks. With the representation and manipulation of XML based technological file, the system solves some important problems in web environment such as information interactive efficiency and refreshing of web page. The CAPP system is written in ASP VBScript, JavaScript, Visual C++ languages and Oracle database. At present, the CAPP system is running in Shenyang Machine Tools. The functions of it meet the requirements of enterprise production.

  1. XML as a cross-platform representation for medical imaging with fuzzy algorithms.

    Science.gov (United States)

    Gal, Norbert; Stoicu-Tivadar, Vasile

    2011-01-01

    Machines that perform linguistic medical image interpretation are based on fuzzy algorithms. There are several frameworks that can edit and simulate fuzzy algorithms, but they are not compatible with most of the implemented applications. This paper suggests a representation for fuzzy algorithms in XML files, and using this XML as a cross-platform between the simulation framework and the software applications. The paper presents a parsing algorithm that can convert files created by simulation framework, and converts them dynamically into an XML file keeping the original logical structure of the files.

  2. Secure combination of XML signature application with message aggregation in multicast settings

    DEFF Research Database (Denmark)

    Becker, Andreas; Jensen, Meiko

    2013-01-01

    The similarity-based aggregation of XML documents is a proven method for reducing network traffic. However, when used in conjunction with XML security standards, a lot of pitfalls, but also optimization potentials exist. In this paper, we investigate these issues, showing how to exploit similarity......-based aggregation for rapid distribution of digitally signed XML data. Using our own implementation in two different experimental settings, we provide both a thorough evaluation and a security proof for our approach. By this we prove both feasibility and security, and we illustrate how to achieve a network traffic...

  3. Definition of an XML markup language for clinical laboratory procedures and comparison with generic XML markup.

    Science.gov (United States)

    Saadawi, Gilan M; Harrison, James H

    2006-10-01

    Clinical laboratory procedure manuals are typically maintained as word processor files and are inefficient to store and search, require substantial effort for review and updating, and integrate poorly with other laboratory information. Electronic document management systems could improve procedure management and utility. As a first step toward building such systems, we have developed a prototype electronic format for laboratory procedures using Extensible Markup Language (XML). Representative laboratory procedures were analyzed to identify document structure and data elements. This information was used to create a markup vocabulary, CLP-ML, expressed as an XML Document Type Definition (DTD). To determine whether this markup provided advantages over generic markup, we compared procedures structured with CLP-ML or with the vocabulary of the Health Level Seven, Inc. (HL7) Clinical Document Architecture (CDA) narrative block. CLP-ML includes 124 XML tags and supports a variety of procedure types across different laboratory sections. When compared with a general-purpose markup vocabulary (CDA narrative block), CLP-ML documents were easier to edit and read, less complex structurally, and simpler to traverse for searching and retrieval. In combination with appropriate software, CLP-ML is designed to support electronic authoring, reviewing, distributing, and searching of clinical laboratory procedures from a central repository, decreasing procedure maintenance effort and increasing the utility of procedure information. A standard electronic procedure format could also allow laboratories and vendors to share procedures and procedure layouts, minimizing duplicative word processor editing. Our results suggest that laboratory-specific markup such as CLP-ML will provide greater benefit for such systems than generic markup.

  4. A multichip aVLSI system emulating orientation selectivity of primary visual cortical cells.

    Science.gov (United States)

    Shimonomura, Kazuhiro; Yagi, Tetsuya

    2005-07-01

    In this paper, we designed and fabricated a multichip neuromorphic analog very large scale integrated (aVLSI) system, which emulates the orientation selective response of the simple cell in the primary visual cortex. The system consists of a silicon retina and an orientation chip. An image, which is filtered by a concentric center-surround (CS) antagonistic receptive field of the silicon retina, is transferred to the orientation chip. The image transfer from the silicon retina to the orientation chip is carried out with analog signals. The orientation chip selectively aggregates multiple pixels of the silicon retina, mimicking the feedforward model proposed by Hubel and Wiesel. The chip provides the orientation-selective (OS) outputs which are tuned to 0 degrees, 60 degrees, and 120 degrees. The feed-forward aggregation reduces the fixed pattern noise that is due to the mismatch of the transistors in the orientation chip. The spatial properties of the orientation selective response were examined in terms of the adjustable parameters of the chip, i.e., the number of aggregated pixels and size of the receptive field of the silicon retina. The multichip aVLSI architecture used in the present study can be applied to implement higher order cells such as the complex cell of the primary visual cortex.

  5. XML schema matching: balancing efficiency and effectiveness by means of clustering

    NARCIS (Netherlands)

    Smiljanic, M.

    2006-01-01

    In this thesis we place our research in the scope of a tool which looks for information within XML data on the Internet. We envision a personal schema querying system which enables a user to express his information need by specifying a personal XML schema. The user can also ask queries over his

  6. A transaction model for XML databases

    NARCIS (Netherlands)

    Dekeyser, S.; Hidders, A.J.H.; Paredaens, J.

    2004-01-01

    Abstract The hierarchical and semistructured nature of XML data may cause complicated update behavior. Updates should not be limited to entire document trees, but should ideally involve subtrees and even individual elements. Providing a suitable scheduling algorithm for semistructured data can

  7. XML-BSPM: an XML format for storing Body Surface Potential Map recordings.

    Science.gov (United States)

    Bond, Raymond R; Finlay, Dewar D; Nugent, Chris D; Moore, George

    2010-05-14

    The Body Surface Potential Map (BSPM) is an electrocardiographic method, for recording and displaying the electrical activity of the heart, from a spatial perspective. The BSPM has been deemed more accurate for assessing certain cardiac pathologies when compared to the 12-lead ECG. Nevertheless, the 12-lead ECG remains the most popular ECG acquisition method for non-invasively assessing the electrical activity of the heart. Although data from the 12-lead ECG can be stored and shared using open formats such as SCP-ECG, no open formats currently exist for storing and sharing the BSPM. As a result, an innovative format for storing BSPM datasets has been developed within this study. The XML vocabulary was chosen for implementation, as opposed to binary for the purpose of human readability. There are currently no standards to dictate the number of electrodes and electrode positions for recording a BSPM. In fact, there are at least 11 different BSPM electrode configurations in use today. Therefore, in order to support these BSPM variants, the XML-BSPM format was made versatile. Hence, the format supports the storage of custom torso diagrams using SVG graphics. This diagram can then be used in a 2D coordinate system for retaining electrode positions. This XML-BSPM format has been successfully used to store the Kornreich-117 BSPM dataset and the Lux-192 BSPM dataset. The resulting file sizes were in the region of 277 kilobytes for each BSPM recording and can be deemed suitable for example, for use with any telemonitoring application. Moreover, there is potential for file sizes to be further reduced using basic compression algorithms, i.e. the deflate algorithm. Finally, these BSPM files have been parsed and visualised within a convenient time period using a web based BSPM viewer. This format, if widely adopted could promote BSPM interoperability, knowledge sharing and data mining. This work could also be used to provide conceptual solutions and inspire existing formats

  8. Integrated Syntactic/Semantic XML Data Validation with a Reusable Software Component

    Science.gov (United States)

    Golikov, Steven

    2013-01-01

    Data integration is a critical component of enterprise system integration, and XML data validation is the foundation for sound data integration of XML-based information systems. Since B2B e-commerce relies on data validation as one of the critical components for enterprise integration, it is imperative for financial industries and e-commerce…

  9. 77 FR 46986 - Revisions to Electric Quarterly Report Filing Process; Availability of Draft XML Schema

    Science.gov (United States)

    2012-08-07

    ... Supplementary Information Section below for details. DATES: The draft XML Schema is now available at the links...] Revisions to Electric Quarterly Report Filing Process; Availability of Draft XML Schema AGENCY: Federal... Regulatory Commission is making available on its Web site ( http://www.ferc.gov ) a draft of the XML schema...

  10. Association rule extraction from XML stream data for wireless sensor networks.

    Science.gov (United States)

    Paik, Juryon; Nam, Junghyun; Kim, Ung Mo; Won, Dongho

    2014-07-18

    With the advances of wireless sensor networks, they yield massive volumes of disparate, dynamic and geographically-distributed and heterogeneous data. The data mining community has attempted to extract knowledge from the huge amount of data that they generate. However, previous mining work in WSNs has focused on supporting simple relational data structures, like one table per network, while there is a need for more complex data structures. This deficiency motivates XML, which is the current de facto format for the data exchange and modeling of a wide variety of data sources over the web, to be used in WSNs in order to encourage the interchangeability of heterogeneous types of sensors and systems. However, mining XML data for WSNs has two challenging issues: one is the endless data flow; and the other is the complex tree structure. In this paper, we present several new definitions and techniques related to association rule mining over XML data streams in WSNs. To the best of our knowledge, this work provides the first approach to mining XML stream data that generates frequent tree items without any redundancy.

  11. An exponentiation method for XML element retrieval.

    Science.gov (United States)

    Wichaiwong, Tanakorn

    2014-01-01

    XML document is now widely used for modelling and storing structured documents. The structure is very rich and carries important information about contents and their relationships, for example, e-Commerce. XML data-centric collections require query terms allowing users to specify constraints on the document structure; mapping structure queries and assigning the weight are significant for the set of possibly relevant documents with respect to structural conditions. In this paper, we present an extension to the MEXIR search system that supports the combination of structural and content queries in the form of content-and-structure queries, which we call the Exponentiation function. It has been shown the structural information improve the effectiveness of the search system up to 52.60% over the baseline BM25 at MAP.

  12. QuakeML - An XML Schema for Seismology

    Science.gov (United States)

    Wyss, A.; Schorlemmer, D.; Maraini, S.; Baer, M.; Wiemer, S.

    2004-12-01

    We propose an extensible format-definition for seismic data (QuakeML). Sharing data and seismic information efficiently is one of the most important issues for research and observational seismology in the future. The eXtensible Markup Language (XML) is playing an increasingly important role in the exchange of a variety of data. Due to its extensible definition capabilities, its wide acceptance and the existing large number of utilities and libraries for XML, a structured representation of various types of seismological data should in our opinion be developed by defining a 'QuakeML' standard. Here we present the QuakeML definitions for parameter databases and further efforts, e.g. a central QuakeML catalog database and a web portal for exchanging codes and stylesheets.

  13. An Identification Key for Selecting Methods for Sustainability Assessments

    Directory of Open Access Journals (Sweden)

    Michiel C. Zijp

    2015-03-01

    Full Text Available Sustainability assessments can play an important role in decision making. This role starts with selecting appropriate methods for a given situation. We observed that scientists, consultants, and decision-makers often do not systematically perform a problem analyses that guides the choice of the method, partly related to a lack of systematic, though sufficiently versatile approaches to do so. Therefore, we developed and propose a new step towards method selection on the basis of question articulation: the Sustainability Assessment Identification Key. The identification key was designed to lead its user through all important choices needed for comprehensive question articulation. Subsequently, methods that fit the resulting specific questions are suggested by the key. The key consists of five domains, of which three determine method selection and two the design or use of the method. Each domain consists of four or more criteria that need specification. For example in the domain “system boundaries”, amongst others, the spatial and temporal scales are specified. The key was tested (retrospectively on a set of thirty case studies. Using the key appeared to contribute to improved: (i transparency in the link between the question and method selection; (ii consistency between questions asked and answers provided; and (iii internal consistency in methodological design. There is latitude to develop the current initial key further, not only for selecting methods pertinent to a problem definition, but also as a principle for associated opportunities such as stakeholder identification.

  14. Improving catalytic selectivity through control of adsorption orientation

    Science.gov (United States)

    Pang, Simon H.

    In this thesis, we present an investigation, starting from surface science experiments, leading to design of supported catalysts, of how adsorption orientation can be used to affect reaction selectivity of highly functional molecules. The surface chemistry of furfuryl alcohol and benzyl alcohol and their respective aldehydes was studied on a Pd(111) single-crystal surface under ultra-high vacuum conditions. Temperature-programmed desorption experiments showed that synergistic chemistry existed between the aromatic ring and the oxygen-containing functional group, each allowing the other to participate in reaction pathways that a monofunctional molecule could not. Most important of these was a deoxygenation reaction that occurred more readily when the surface was crowded by the highest exposures. High-resolution electron energy loss spectroscopy revealed that at these high exposures, molecules were oriented upright on the surface, with the aromatic function extending into vacuum. In contrast, at low exposures, molecules were oriented flat on the surface. The upright adsorption geometry was correlated with deoxygenation, whereas the flat-lying geometry was correlated with decarbonylation. The insight gained from surface science experiments was utilized in catalyst design. Self-assembled monolayers of alkanethiolates were used to systematically reduce the average surface ensemble size, and the reaction selectivity was tracked. When a sparsely-packed monolayer was used, such as one formed by 1-adamantanethiol, the reactant furfural was still able to lie flat on the surface and the reaction selectivity was similar to that of the uncoated catalyst. However, when a densely-packed monolayer, formed by 1-octadecanethiol, was used, furfural was not able to adsorb flat on the surface and instead adopted an upright conformation, leading to a drastic increase in aldehyde hydrogenation and hydrodeoxygenation reaction selectivity. Using an even higher sulfur coverage from a

  15. FireCalc: An XML-based framework for distributed data analysis

    International Nuclear Information System (INIS)

    Duarte, A.S.; Santos, J.H.; Fernandes, H.; Neto, A.; Pereira, T.; Varandas, C.A.F.

    2008-01-01

    Requirements and specifications for Control Data Access and Communication (CODAC) systems in fusion reactors point towards flexible and modular solutions, independent from operating system and computer architecture. These concepts can also be applied to calculation and data analysis systems, where highly standardized solutions must also apply in order to anticipate long time-scales and high technology evolution changes. FireCalc is an analysis tool based on standard Extensible Markup Language (XML) technologies. Actions are described in an XML file, which contains necessary data specifications and the code or references to scripts. This is used by the user to send the analysis code and data to a server, which can be running either locally or remotely. Communications between the user and the server are performed through XML-RPC, an XML based remote procedure call, thus enabling the client and server to be coded in different computer languages. Access to the database, security procedures and calls to the code interpreter are handled through independent modules, which unbinds them from specific solutions. Currently there is an implementation of the FireCalc framework in Java, that uses the Shared Data Access System (SDAS) for accessing the ISTTOK database and the Scilab kernel for the numerical analysis

  16. FireCalc: An XML-based framework for distributed data analysis

    Energy Technology Data Exchange (ETDEWEB)

    Duarte, A.S. [Associacao Euratom/IST, Centro de Fusao Nuclear, Av. Rovisco Pais P-1049-001 Lisboa (Portugal)], E-mail: andre.duarte@cfn.ist.utl.pt; Santos, J.H.; Fernandes, H.; Neto, A.; Pereira, T.; Varandas, C.A.F. [Associacao Euratom/IST, Centro de Fusao Nuclear, Av. Rovisco Pais P-1049-001 Lisboa (Portugal)

    2008-04-15

    Requirements and specifications for Control Data Access and Communication (CODAC) systems in fusion reactors point towards flexible and modular solutions, independent from operating system and computer architecture. These concepts can also be applied to calculation and data analysis systems, where highly standardized solutions must also apply in order to anticipate long time-scales and high technology evolution changes. FireCalc is an analysis tool based on standard Extensible Markup Language (XML) technologies. Actions are described in an XML file, which contains necessary data specifications and the code or references to scripts. This is used by the user to send the analysis code and data to a server, which can be running either locally or remotely. Communications between the user and the server are performed through XML-RPC, an XML based remote procedure call, thus enabling the client and server to be coded in different computer languages. Access to the database, security procedures and calls to the code interpreter are handled through independent modules, which unbinds them from specific solutions. Currently there is an implementation of the FireCalc framework in Java, that uses the Shared Data Access System (SDAS) for accessing the ISTTOK database and the Scilab kernel for the numerical analysis.

  17. ForConX: A forcefield conversion tool based on XML.

    Science.gov (United States)

    Lesch, Volker; Diddens, Diddo; Bernardes, Carlos E S; Golub, Benjamin; Dequidt, Alain; Zeindlhofer, Veronika; Sega, Marcello; Schröder, Christian

    2017-04-05

    The force field conversion from one MD program to another one is exhausting and error-prone. Although single conversion tools from one MD program to another exist not every combination and both directions of conversion are available for the favorite MD programs Amber, Charmm, Dl-Poly, Gromacs, and Lammps. We present here a general tool for the force field conversion on the basis of an XML document. The force field is converted to and from this XML structure facilitating the implementation of new MD programs for the conversion. Furthermore, the XML structure is human readable and can be manipulated before continuing the conversion. We report, as testcases, the conversions of topologies for acetonitrile, dimethylformamide, and 1-ethyl-3-methylimidazolium trifluoromethanesulfonate comprising also Urey-Bradley and Ryckaert-Bellemans potentials. © 2017 Wiley Periodicals, Inc. © 2017 Wiley Periodicals, Inc.

  18. The Simplest Evaluation Measures for XML Information Retrieval that Could Possibly Work

    NARCIS (Netherlands)

    Hiemstra, Djoerd; Mihajlovic, V.

    2005-01-01

    This paper reviews several evaluation measures developed for evaluating XML information retrieval (IR) systems. We argue that these measures, some of which are currently in use by the INitiative for the Evaluation of XML Retrieval (INEX), are complicated, hard to understand, and hard to explain to

  19. Experience in Computer-Assisted XML-Based Modelling in the Context of Libraries

    CERN Document Server

    Niinimäki, M

    2003-01-01

    In this paper, we introduce a software called Meta Data Visualisation (MDV) that (i) assists the user with a graphical user interface in the creation of his specific document types, (ii) creates a database according to these document types, (iii) allows the user to browse the database, and (iv) uses native XML presentation of the data in order to allow queries or data to be exported to other XML-based systems. We illustrate the use of MDV and XML modelling using library-related examples to build a bibliographic database. In our opinion, creating document type descriptions corresponds to conceptual and logical database design in a database design process. We consider that this design can be supported with a suitable set of tools that help the designer concentrate on conceptual issues instead of implementation issues. Our hypothesis is that using the methodology presented in this paper we can create XML databases that are useful and relevant, and with which MDV works as a user interface.

  20. XVCL: XML-based Variant Configuration Language

    DEFF Research Database (Denmark)

    Jarzabek, Stan; Basset, Paul; Zhang, Hongyu

    2003-01-01

    XVCL (XML-based Variant Configuration Language) is a meta-programming technique and tool that provides effective reuse mechanisms. XVCL is an open source software developed at the National University of Singapore. Being a modern and versatile version of Bassett's frames, a technology that has...

  1. XML DTD and Schemas for HDF-EOS

    Science.gov (United States)

    Ullman, Richard; Yang, Jingli

    2008-01-01

    An Extensible Markup Language (XML) document type definition (DTD) standard for the structure and contents of HDF-EOS files and their contents, and an equivalent standard in the form of schemas, have been developed.

  2. Visual cells remember earlier applied target: plasticity of orientation selectivity.

    Directory of Open Access Journals (Sweden)

    Narcis Ghisovan

    Full Text Available BACKGROUND: A canonical proposition states that, in mature brain, neurons responsive to sensory stimuli are tuned to specific properties installed shortly after birth. It is amply demonstrated that that neurons in adult visual cortex of cats are orientation-selective that is they respond with the highest firing rates to preferred oriented stimuli. METHODOLOGY/PRINCIPAL FINDINGS: In anesthetized cats, prepared in a conventional fashion for single cell recordings, the present investigation shows that presenting a stimulus uninterruptedly at a non-preferred orientation for twelve minutes induces changes in orientation preference. Across all conditions orientation tuning curves were investigated using a trial by trial method. Contrary to what has been previously reported with shorter adaptation duration, twelve minutes of adaptation induces mostly attractive shifts, i.e. toward the adapter. After a recovery period allowing neurons to restore their original orientation tuning curves, we carried out a second adaptation which produced three major results: (1 more frequent attractive shifts, (2 an increase of their magnitude, and (3 an additional enhancement of responses at the new or acquired preferred orientation. Additionally, we also show that the direction of shifts depends on the duration of the adaptation: shorter adaptation in most cases produces repulsive shifts, whereas adaptation exceeding nine minutes results in attractive shifts, in the same unit. Consequently, shifts in preferred orientation depend on the duration of adaptation. CONCLUSION/SIGNIFICANCE: The supplementary response improvements indicate that neurons in area 17 keep a memory trace of the previous stimulus properties, thereby upgrading cellular performance. It also highlights the dynamic nature of basic neuronal properties in adult cortex since repeated adaptations modified both the orientation tuning selectivity and the response strength to the preferred orientation. These

  3. An Exponentiation Method for XML Element Retrieval

    Science.gov (United States)

    2014-01-01

    XML document is now widely used for modelling and storing structured documents. The structure is very rich and carries important information about contents and their relationships, for example, e-Commerce. XML data-centric collections require query terms allowing users to specify constraints on the document structure; mapping structure queries and assigning the weight are significant for the set of possibly relevant documents with respect to structural conditions. In this paper, we present an extension to the MEXIR search system that supports the combination of structural and content queries in the form of content-and-structure queries, which we call the Exponentiation function. It has been shown the structural information improve the effectiveness of the search system up to 52.60% over the baseline BM25 at MAP. PMID:24696643

  4. XML databases and the semantic web

    CERN Document Server

    Thuraisingham, Bhavani

    2002-01-01

    Efficient access to data, sharing data, extracting information from data, and making use of the information have become urgent needs for today''s corporations. With so much data on the Web, managing it with conventional tools is becoming almost impossible. New tools and techniques are necessary to provide interoperability as well as warehousing between multiple data sources and systems, and to extract information from the databases. XML Databases and the Semantic Web focuses on critical and new Web technologies needed for organizations to carry out transactions on the Web, to understand how to use the Web effectively, and to exchange complex documents on the Web.This reference for database administrators, database designers, and Web designers working in tandem with database technologists covers three emerging technologies of significant impact for electronic business: Extensible Markup Language (XML), semi-structured databases, and the semantic Web. The first two parts of the book explore these emerging techn...

  5. Internet-based data interchange with XML

    Science.gov (United States)

    Fuerst, Karl; Schmidt, Thomas

    2000-12-01

    In this paper, a complete concept for Internet Electronic Data Interchange (EDI) - a well-known buzzword in the area of logistics and supply chain management to enable the automation of the interactions between companies and their partners - using XML (eXtensible Markup Language) will be proposed. This approach is based on Internet and XML, because the implementation of traditional EDI (e.g. EDIFACT, ANSI X.12) is mostly too costly for small and medium sized enterprises, which want to integrate their suppliers and customers in a supply chain. The paper will also present the results of the implementation of a prototype for such a system, which has been developed for an industrial partner to improve the current situation of parts delivery. The main functions of this system are an early warning system to detect problems during the parts delivery process as early as possible, and a transport following system to pursue the transportation.

  6. Association Rule Extraction from XML Stream Data for Wireless Sensor Networks

    Science.gov (United States)

    Paik, Juryon; Nam, Junghyun; Kim, Ung Mo; Won, Dongho

    2014-01-01

    With the advances of wireless sensor networks, they yield massive volumes of disparate, dynamic and geographically-distributed and heterogeneous data. The data mining community has attempted to extract knowledge from the huge amount of data that they generate. However, previous mining work in WSNs has focused on supporting simple relational data structures, like one table per network, while there is a need for more complex data structures. This deficiency motivates XML, which is the current de facto format for the data exchange and modeling of a wide variety of data sources over the web, to be used in WSNs in order to encourage the interchangeability of heterogeneous types of sensors and systems. However, mining XML data for WSNs has two challenging issues: one is the endless data flow; and the other is the complex tree structure. In this paper, we present several new definitions and techniques related to association rule mining over XML data streams in WSNs. To the best of our knowledge, this work provides the first approach to mining XML stream data that generates frequent tree items without any redundancy. PMID:25046017

  7. Rock.XML - Towards a library of rock physics models

    Science.gov (United States)

    Jensen, Erling Hugo; Hauge, Ragnar; Ulvmoen, Marit; Johansen, Tor Arne; Drottning, Åsmund

    2016-08-01

    Rock physics modelling provides tools for correlating physical properties of rocks and their constituents to the geophysical observations we measure on a larger scale. Many different theoretical and empirical models exist, to cover the range of different types of rocks. However, upon reviewing these, we see that they are all built around a few main concepts. Based on this observation, we propose a format for digitally storing the specifications for rock physics models which we have named Rock.XML. It does not only contain data about the various constituents, but also the theories and how they are used to combine these building blocks to make a representative model for a particular rock. The format is based on the Extensible Markup Language XML, making it flexible enough to handle complex models as well as scalable towards extending it with new theories and models. This technology has great advantages as far as documenting and exchanging models in an unambiguous way between people and between software. Rock.XML can become a platform for creating a library of rock physics models; making them more accessible to everyone.

  8. XML como medio de normalización y desarrollo documental.

    Directory of Open Access Journals (Sweden)

    de la Rosa, Antonio

    1999-12-01

    Full Text Available The Web, as a working environment for information science professionals, demands the exploitation of new tools. These tools are intended to allow the information management in a structured and organised way. XML and its specifications offer a wide range of solutions for the problems of our domain: either for the development of documentary software or the day-to-day tasks. In this article, the XML standard is briefly presented and its possible impact in the profession is evaluated as well as the possibilities to use it as vehicle for the creation of information systems.

    El Web, como entorno de trabajo para los profesionales de la documentación, requiere la utilización de nuevas herramientas que permitan gestionar la información de forma estructurada y organizada. XML y las especificaciones que se derivan de él ofrecen una amplia gama de soluciones a los diversos problemas que atañen a nuestra disciplina, tanto para el desarrollo de software documental como para las tareas cotidianas. En este artículo se presenta brevemente la norma XML y se evalúa su posible impacto en la profesión así como las posibilidades de utilizarlo como vehículo para la creación de sistemas de información.

  9. Using XML technology for the ontology-based semantic integration of life science databases.

    Science.gov (United States)

    Philippi, Stephan; Köhler, Jacob

    2004-06-01

    Several hundred internet accessible life science databases with constantly growing contents and varying areas of specialization are publicly available via the internet. Database integration, consequently, is a fundamental prerequisite to be able to answer complex biological questions. Due to the presence of syntactic, schematic, and semantic heterogeneities, large scale database integration at present takes considerable efforts. As there is a growing apprehension of extensible markup language (XML) as a means for data exchange in the life sciences, this article focuses on the impact of XML technology on database integration in this area. In detail, a general architecture for ontology-driven data integration based on XML technology is introduced, which overcomes some of the traditional problems in this area. As a proof of concept, a prototypical implementation of this architecture based on a native XML database and an expert system shell is described for the realization of a real world integration scenario.

  10. Efficient XML Interchange (EXI) Compression and Performance Benefits: Development, Implementation and Evaluation

    Science.gov (United States)

    2010-03-01

    181 a. Information Grammar Theory ( Chomsky ) ..........................181 b. Events...document. a. Information Grammar Theory ( Chomsky ) Both grammars and events are learned for each XML document by means of a supporting schema or by...processing the XML document. The learning process is similar to Chomsky grammars, a hierarchical-based formal grammar for defining a language

  11. A new XML-aware compression technique for improving performance of healthcare information systems over hospital networks.

    Science.gov (United States)

    Al-Shammary, Dhiah; Khalil, Ibrahim

    2010-01-01

    Most organizations exchange, collect, store and process data over the Internet. Many hospital networks deploy Web services to send and receive patient information. SOAP (Simple Object Access Protocol) is the most usable communication protocol for Web services. XML is the standard encoding language of SOAP messages. However, the major drawback of XML messages is the high network traffic caused by large overheads. In this paper, two XML-aware compressors are suggested to compress patient messages stemming from any data transactions between Web clients and servers. The proposed compression techniques are based on the XML structure concepts and use both fixed-length and Huffman encoding methods for translating the XML message tree. Experiments show that they outperform all the conventional compression methods and can save tremendous amount of network bandwidth.

  12. On HTML and XML based web design and implementation techniques

    International Nuclear Information System (INIS)

    Bezboruah, B.; Kalita, M.

    2006-05-01

    Web implementation is truly a multidisciplinary field with influences from programming, choosing of scripting languages, graphic design, user interface design, and database design. The challenge of a Web designer/implementer is his ability to create an attractive and informative Web. To work with the universal framework and link diagrams from the design process as well as the Web specifications and domain information, it is essential to create Hypertext Markup Language (HTML) or other software and multimedia to accomplish the Web's objective. In this article we will discuss Web design standards and the techniques involved in Web implementation based on HTML and Extensible Markup Language (XML). We will also discuss the advantages and disadvantages of HTML over its successor XML in designing and implementing a Web. We have developed two Web pages, one utilizing the features of HTML and the other based on the features of XML to carry out the present investigation. (author)

  13. The carbohydrate sequence markup language (CabosML): an XML description of carbohydrate structures.

    Science.gov (United States)

    Kikuchi, Norihiro; Kameyama, Akihiko; Nakaya, Shuuichi; Ito, Hiromi; Sato, Takashi; Shikanai, Toshihide; Takahashi, Yoriko; Narimatsu, Hisashi

    2005-04-15

    Bioinformatics resources for glycomics are very poor as compared with those for genomics and proteomics. The complexity of carbohydrate sequences makes it difficult to define a common language to represent them, and the development of bioinformatics tools for glycomics has not progressed. In this study, we developed a carbohydrate sequence markup language (CabosML), an XML description of carbohydrate structures. The language definition (XML Schema) and an experimental database of carbohydrate structures using an XML database management system are available at http://www.phoenix.hydra.mki.co.jp/CabosDemo.html kikuchi@hydra.mki.co.jp.

  14. Mean-field analysis of orientation selectivity in inhibition-dominated networks of spiking neurons.

    Science.gov (United States)

    Sadeh, Sadra; Cardanobile, Stefano; Rotter, Stefan

    2014-01-01

    Mechanisms underlying the emergence of orientation selectivity in the primary visual cortex are highly debated. Here we study the contribution of inhibition-dominated random recurrent networks to orientation selectivity, and more generally to sensory processing. By simulating and analyzing large-scale networks of spiking neurons, we investigate tuning amplification and contrast invariance of orientation selectivity in these networks. In particular, we show how selective attenuation of the common mode and amplification of the modulation component take place in these networks. Selective attenuation of the baseline, which is governed by the exceptional eigenvalue of the connectivity matrix, removes the unspecific, redundant signal component and ensures the invariance of selectivity across different contrasts. Selective amplification of modulation, which is governed by the operating regime of the network and depends on the strength of coupling, amplifies the informative signal component and thus increases the signal-to-noise ratio. Here, we perform a mean-field analysis which accounts for this process.

  15. Lateral Spread of Orientation Selectivity in V1 is Controlled by Intracortical Cooperativity

    Science.gov (United States)

    Chavane, Frédéric; Sharon, Dahlia; Jancke, Dirk; Marre, Olivier; Frégnac, Yves; Grinvald, Amiram

    2011-01-01

    Neurons in the primary visual cortex receive subliminal information originating from the periphery of their receptive fields (RF) through a variety of cortical connections. In the cat primary visual cortex, long-range horizontal axons have been reported to preferentially bind to distant columns of similar orientation preferences, whereas feedback connections from higher visual areas provide a more diverse functional input. To understand the role of these lateral interactions, it is crucial to characterize their effective functional connectivity and tuning properties. However, the overall functional impact of cortical lateral connections, whatever their anatomical origin, is unknown since it has never been directly characterized. Using direct measurements of postsynaptic integration in cat areas 17 and 18, we performed multi-scale assessments of the functional impact of visually driven lateral networks. Voltage-sensitive dye imaging showed that local oriented stimuli evoke an orientation-selective activity that remains confined to the cortical feedforward imprint of the stimulus. Beyond a distance of one hypercolumn, the lateral spread of cortical activity gradually lost its orientation preference approximated as an exponential with a space constant of about 1 mm. Intracellular recordings showed that this loss of orientation selectivity arises from the diversity of converging synaptic input patterns originating from outside the classical RF. In contrast, when the stimulus size was increased, we observed orientation-selective spread of activation beyond the feedforward imprint. We conclude that stimulus-induced cooperativity enhances the long-range orientation-selective spread. PMID:21629708

  16. jMRUI plugin software (jMRUI2XML) to allow automated MRS processing and XML-based standardized output

    Czech Academy of Sciences Publication Activity Database

    Mocioiu, V.; Ortega-Martorell, S.; Olier, I.; Jabłoński, Michal; Starčuková, Jana; Lisboa, P.; Arús, C.; Julia-Sapé, M.

    2015-01-01

    Roč. 28, S1 (2015), S518 ISSN 0968-5243. [ESMRMB 2015. Annual Scientific Meeting /32./. 01.09.2015-03.09.2015, Edinburgh] Institutional support: RVO:68081731 Keywords : MR Spectroscopy * signal processing * jMRUI * software development * XML Subject RIV: BH - Optics, Masers, Lasers

  17. Converting from XML to HDF-EOS

    Science.gov (United States)

    Ullman, Richard; Bane, Bob; Yang, Jingli

    2008-01-01

    A computer program recreates an HDF-EOS file from an Extensible Markup Language (XML) representation of the contents of that file. This program is one of two programs written to enable testing of the schemas described in the immediately preceding article to determine whether the schemas capture all details of HDF-EOS files.

  18. Transitioning from XML to RDF: Considerations for an effective move towards Linked Data and the Semantic Web

    Directory of Open Access Journals (Sweden)

    Juliet L. Hardesty

    2016-04-01

    Full Text Available Metadata, particularly within the academic library setting, is often expressed in eXtensible Markup Language (XML and managed with XML tools, technologies, and workflows. Managing a library’s metadata currently takes on a greater level of complexity as libraries are increasingly adopting the Resource Description Framework (RDF. Semantic Web initiatives are surfacing in the library context with experiments in publishing metadata as Linked Data sets and also with development efforts such as BIBFRAME and the Fedora 4 Digital Repository incorporating RDF. Use cases show that transitions into RDF are occurring in both XML standards and in libraries with metadata encoded in XML. It is vital to understand that transitioning from XML to RDF requires a shift in perspective from replicating structures in XML to defining meaningful relationships in RDF. Establishing coordination and communication among these efforts will help as more libraries move to use RDF, produce Linked Data, and approach the Semantic Web.

  19. Orientation of rod molecules in selective slits: a density functional theory

    International Nuclear Information System (INIS)

    Xu Xiaofei; Cao Dapeng; Wang Wenchuan

    2008-01-01

    A density functional theory (DFT) is used to investigate molecular orientation of rod fluids in selective slits. The DFT approach combines a modified fundamental measure theory (MFMT) for excluded-volume effect, the first-order thermodynamics perturbation theory for chain connectivity and the mean-field approximation for van der Waals (vdW) attraction. To study the molecular orientation, the intramolecular bonding orientation function is introduced into the DFT. First, we investigate the orientation of the surfactant-like rod molecule of AB 6 (i.e. ABBBBBB) in a nanoslit of H 20σ, where the walls selectively adsorb segment 'A'. It is observed that, with the increase of the surface energy of the wall to head segment (i.e. 'A' segment) of the rod molecule, the rod molecules adsorbed on the wall present the perpendicular orientation gradually, and assemble into a smectic-A-like monolayer finally. In addition, we also explore the molecular orientation of the rods with both end segments preferring to the wall, i.e. AB 8 A and AB 7 A, in a nanoslit of H = 10σ. Interestingly, the AB 8 A rod monolayer is compatible with either a smectic-A-like or a smectic-C-like organization, but AB 7 A rod molecules exhibit the smectic-A-like organization. The orientation factor of the AB 7 A rod molecule reaches 1, suggesting that AB 7 A rod molecules self-assemble into an ordered structure with perfectly perpendicular orientation to the wall.

  20. XSemantic: An Extension of LCA Based XML Semantic Search

    Science.gov (United States)

    Supasitthimethee, Umaporn; Shimizu, Toshiyuki; Yoshikawa, Masatoshi; Porkaew, Kriengkrai

    One of the most convenient ways to query XML data is a keyword search because it does not require any knowledge of XML structure or learning a new user interface. However, the keyword search is ambiguous. The users may use different terms to search for the same information. Furthermore, it is difficult for a system to decide which node is likely to be chosen as a return node and how much information should be included in the result. To address these challenges, we propose an XML semantic search based on keywords called XSemantic. On the one hand, we give three definitions to complete in terms of semantics. Firstly, the semantic term expansion, our system is robust from the ambiguous keywords by using the domain ontology. Secondly, to return semantic meaningful answers, we automatically infer the return information from the user queries and take advantage of the shortest path to return meaningful connections between keywords. Thirdly, we present the semantic ranking that reflects the degree of similarity as well as the semantic relationship so that the search results with the higher relevance are presented to the users first. On the other hand, in the LCA and the proximity search approaches, we investigated the problem of information included in the search results. Therefore, we introduce the notion of the Lowest Common Element Ancestor (LCEA) and define our simple rule without any requirement on the schema information such as the DTD or XML Schema. The first experiment indicated that XSemantic not only properly infers the return information but also generates compact meaningful results. Additionally, the benefits of our proposed semantics are demonstrated by the second experiment.

  1. Hand placement near the visual stimulus improves orientation selectivity in V2 neurons

    Science.gov (United States)

    Sergio, Lauren E.; Crawford, J. Douglas; Fallah, Mazyar

    2015-01-01

    Often, the brain receives more sensory input than it can process simultaneously. Spatial attention helps overcome this limitation by preferentially processing input from a behaviorally-relevant location. Recent neuropsychological and psychophysical studies suggest that attention is deployed to near-hand space much like how the oculomotor system can deploy attention to an upcoming gaze position. Here we provide the first neuronal evidence that the presence of a nearby hand enhances orientation selectivity in early visual processing area V2. When the hand was placed outside the receptive field, responses to the preferred orientation were significantly enhanced without a corresponding significant increase at the orthogonal orientation. Consequently, there was also a significant sharpening of orientation tuning. In addition, the presence of the hand reduced neuronal response variability. These results indicate that attention is automatically deployed to the space around a hand, improving orientation selectivity. Importantly, this appears to be optimal for motor control of the hand, as opposed to oculomotor mechanisms which enhance responses without sharpening orientation selectivity. Effector-based mechanisms for visual enhancement thus support not only the spatiotemporal dissociation of gaze and reach, but also the optimization of vision for their separate requirements for guiding movements. PMID:25717165

  2. An XML schema for automated data integration in a Multi-Source Information System dedicated to end-stage renal disease.

    Science.gov (United States)

    Dufour, Eric; Ben Saïd, Mohamed; Jais, Jean Philippe; Le Mignot, Loic; Richard, Jean-Baptiste; Landais, Paul

    2009-01-01

    Data exchange and interoperability between clinical information systems represent a crucial issue in the context of patient record data collection. An XML representation schema adapted to end-stage renal disease (ESRD) patients was developed and successfully tested against patient data in the dedicated Multi-Source Information System (MSIS) active file (more than 16,000 patient records). The ESRD-XML-Schema is organized into Schema subsets respecting the coherence of the clinical information and enriched with coherent data types. Tests are realized against XML-data files generated in conformity with the ESRD-XML Schema. Manual tests allowed the XML schema validation of the data format and content. Programmatic tests allowed the design of generic XML parsing routines, a portable object data model representation and the implementation of automatic data-exchange flows with the MSIS database system. The ESRD-XML-Schema represents a valid framework for data exchange and supports interoperability. Its modular design offers opportunity to simplify physicians' multiple tasks in order to privilege their clinical work.

  3. Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry.

    Science.gov (United States)

    Röst, Hannes L; Schmitt, Uwe; Aebersold, Ruedi; Malmström, Lars

    2015-01-01

    In mass spectrometry-based proteomics, XML formats such as mzML and mzXML provide an open and standardized way to store and exchange the raw data (spectra and chromatograms) of mass spectrometric experiments. These file formats are being used by a multitude of open-source and cross-platform tools which allow the proteomics community to access algorithms in a vendor-independent fashion and perform transparent and reproducible data analysis. Recent improvements in mass spectrometry instrumentation have increased the data size produced in a single LC-MS/MS measurement and put substantial strain on open-source tools, particularly those that are not equipped to deal with XML data files that reach dozens of gigabytes in size. Here we present a fast and versatile parsing library for mass spectrometric XML formats available in C++ and Python, based on the mature OpenMS software framework. Our library implements an API for obtaining spectra and chromatograms under memory constraints using random access or sequential access functions, allowing users to process datasets that are much larger than system memory. For fast access to the raw data structures, small XML files can also be completely loaded into memory. In addition, we have improved the parsing speed of the core mzML module by over 4-fold (compared to OpenMS 1.11), making our library suitable for a wide variety of algorithms that need fast access to dozens of gigabytes of raw mass spectrometric data. Our C++ and Python implementations are available for the Linux, Mac, and Windows operating systems. All proposed modifications to the OpenMS code have been merged into the OpenMS mainline codebase and are available to the community at https://github.com/OpenMS/OpenMS.

  4. Fast and Efficient XML Data Access for Next-Generation Mass Spectrometry.

    Directory of Open Access Journals (Sweden)

    Hannes L Röst

    Full Text Available In mass spectrometry-based proteomics, XML formats such as mzML and mzXML provide an open and standardized way to store and exchange the raw data (spectra and chromatograms of mass spectrometric experiments. These file formats are being used by a multitude of open-source and cross-platform tools which allow the proteomics community to access algorithms in a vendor-independent fashion and perform transparent and reproducible data analysis. Recent improvements in mass spectrometry instrumentation have increased the data size produced in a single LC-MS/MS measurement and put substantial strain on open-source tools, particularly those that are not equipped to deal with XML data files that reach dozens of gigabytes in size.Here we present a fast and versatile parsing library for mass spectrometric XML formats available in C++ and Python, based on the mature OpenMS software framework. Our library implements an API for obtaining spectra and chromatograms under memory constraints using random access or sequential access functions, allowing users to process datasets that are much larger than system memory. For fast access to the raw data structures, small XML files can also be completely loaded into memory. In addition, we have improved the parsing speed of the core mzML module by over 4-fold (compared to OpenMS 1.11, making our library suitable for a wide variety of algorithms that need fast access to dozens of gigabytes of raw mass spectrometric data.Our C++ and Python implementations are available for the Linux, Mac, and Windows operating systems. All proposed modifications to the OpenMS code have been merged into the OpenMS mainline codebase and are available to the community at https://github.com/OpenMS/OpenMS.

  5. Using small XML elements to support relevance

    NARCIS (Netherlands)

    G. Ramirez Camps (Georgina); T.H.W. Westerveld (Thijs); A.P. de Vries (Arjen)

    2006-01-01

    htmlabstractSmall XML elements are often estimated relevant by the retrieval model but they are not desirable retrieval units. This paper presents a generic model that exploits the information obtained from small elements. We identify relationships between small and relevant elements and use this

  6. XML-based information system for planetary sciences

    Science.gov (United States)

    Carraro, F.; Fonte, S.; Turrini, D.

    2009-04-01

    EuroPlaNet (EPN in the following) has been developed by the planetological community under the "Sixth Framework Programme" (FP6 in the following), the European programme devoted to the improvement of the European research efforts through the creation of an internal market for science and technology. The goal of the EPN programme is the creation of a European network aimed to the diffusion of data produced by space missions dedicated to the study of the Solar System. A special place within the EPN programme is that of I.D.I.S. (Integrated and Distributed Information Service). The main goal of IDIS is to offer to the planetary science community a user-friendly access to the data and information produced by the various types of research activities, i.e. Earth-based observations, space observations, modeling, theory and laboratory experiments. During the FP6 programme IDIS development consisted in the creation of a series of thematic nodes, each of them specialized in a specific scientific domain, and a technical coordination node. The four thematic nodes are the Atmosphere node, the Plasma node, the Interiors & Surfaces node and the Small Bodies & Dust node. The main task of the nodes have been the building up of selected scientific cases related with the scientific domain of each node. The second work done by EPN nodes have been the creation of a catalogue of resources related to their main scientific theme. Both these efforts have been used as the basis for the development of the main IDIS goal, i.e. the integrated distributed service. An XML-based data model have been developed to describe resources using meta-data and to store the meta-data within an XML-based database called eXist. A search engine has been then developed in order to allow users to search resources within the database. Users can select the resource type and can insert one or more values or can choose a value among those present in a list, depending on selected resource. The system searches for all

  7. The application of XML in the effluents data modeling of nuclear facilities

    International Nuclear Information System (INIS)

    Yue Feng; Lin Quanyi; Yue Huiguo; Zhang Yan; Zhang Peng; Cao Jun; Chen Bo

    2013-01-01

    The radioactive effluent data, which can provide information to distinguish whether facilities, waste disposal, and control system run normally, is an important basis of safety regulation and emergency management. It can also provide the information to start emergency alarm system as soon as possible. XML technology is an effective tool to realize the standard of effluent data exchange, in favor of data collection, statistics and analysis, strengthening the effectiveness of effluent regulation. This paper first introduces the concept of XML, the choices of effluent data modeling method, and then emphasizes the process of effluent model, finally the model and application are shown, While there is deficiency about the application of XML in the effluents data modeling of nuclear facilities, it is a beneficial attempt to the informatization management of effluents. (authors)

  8. Dynamic differentiation of GABAA-sensitive influences on orientation selectivity of complex cells in the cat striate cortex.

    Science.gov (United States)

    Pfleger, B; Bonds, A B

    1995-01-01

    The influence of GABAA receptors on orientation selectivity of cat complex cells was tested by iontophoresis of the GABAA receptor blockers bicuculline and N-methyl-bicuculline while stimulating with drifting sinusoidal gratings. Reduction of orientation tuning was markedly less than reported in previous studies that used drifting bars as visual stimuli. Only 3/31 cells lost orientation selectivity, with an average increase in bandwidth of 33%, as opposed to half the cells losing selectivity and a bandwidth increase for the remainder of 47% as reported previously. Infusion of GABAA blockers revealed a prominent stimulus onset transient response, lasting about 120 ms, that showed a broadening of orientation selectivity comparable to that found using drifting bars under similar circumstances. We believe that drifting gratings emphasize a steady-state response component that retains, in the presence of GABAA blockers, significant orientation selectivity. Because the onset transient is initially unselective for orientation, we suggest that the steady-state, orientation-selective response component develops from an alternate inhibitory mechanism, possibly mediated by GABAB receptors.

  9. XML and its impact on content and structure in electronic health care documents.

    Science.gov (United States)

    Sokolowski, R.; Dudeck, J.

    1999-01-01

    Worldwide information networks have the requirement that electronic documents must be easily accessible, portable, flexible and system-independent. With the development of XML (eXtensible Markup Language), the future of electronic documents, health care informatics and the Web itself are about to change. The intent of the recently formed ASTM E31.25 subcommittee, "XML DTDs for Health Care", is to develop standard electronic document representations of paper-based health care documents and forms. A goal of the subcommittee is to work together to enhance existing levels of interoperability among the various XML/SGML standardization efforts, products and systems in health care. The ASTM E31.25 subcommittee uses common practices and software standards to develop the implementation recommendations for XML documents in health care. The implementation recommendations are being developed to standardize the many different structures of documents. These recommendations are in the form of a set of standard DTDs, or document type definitions that match the electronic document requirements in the health care industry. This paper discusses recent efforts of the ASTM E31.25 subcommittee. PMID:10566338

  10. IR and OLAP in XML document warehouses

    DEFF Research Database (Denmark)

    Perez, Juan Manuel; Pedersen, Torben Bach; Berlanga, Rafael

    2005-01-01

    In this paper we propose to combine IR and OLAP (On-Line Analytical Processing) technologies to exploit a warehouse of text-rich XML documents. In the system we plan to develop, a multidimensional implementation of a relevance modeling document model will be used for interactively querying...

  11. Type Checking with XML Schema in XACT

    DEFF Research Database (Denmark)

    Kirkegaard, Christian; Møller, Anders

    to support XML Schema as type formalism. The technique is able to model advanced features, such as type derivations and overloaded local element declarations, and also datatypes of attribute values and character data. Moreover, we introduce optional type annotations to improve modularity of the type checking...

  12. Effects of selected coping strategies on impediment oriented ...

    African Journals Online (AJOL)

    The study was carried out to determine the effects of selected coping strategies on the impediment oriented academic stress of the visually impaired pupils in Oji- River School for the Blind, Enugu State. The study is a quasi-Experimental design involving two treatment groups and one control group. Twenty visually impaired ...

  13. Dual-task results and the lateralization of spatial orientation: artifact of test selection?

    Science.gov (United States)

    Bowers, C A; Milham, L M; Price, C

    1998-01-01

    An investigation was conducted to identify the degree to which results regarding the lateralization of spatial orientation among men and women are artifacts of test selection. A dual-task design was used to study possible lateralization differences, providing baseline and dual-task measures of spatial-orientation performance, right- and left-hand tapping, and vocalization of "cat, dog, horse." The Guilford-Zimmerman Test (Guilford & Zimmerman, 1953), the Eliot-Price Test (Eliot & Price, 1976), and the Stumpf-Fay Cube Perspectives Test (Stumpf & Fay, 1983) were the three spatial-orientation tests used to investigate possible artifacts of test selection. Twenty-eight right-handed male and 39 right-handed female undergraduates completed random baseline and dual-task sessions. Analyses indicated no significant sex-related differences in spatial-orientation ability for all three tests. Furthermore, there was no evidence of differential lateralization of spatial orientation between the sexes.

  14. The role of XML in the CMS detector description

    International Nuclear Information System (INIS)

    Liendl, M.; Lingen, F.van; Todorov, T.; Arce, P.; Furtjes, A.; Innocente, V.; Roeck, A. de; Case, M.

    2001-01-01

    Offline Software such as Simulation, Reconstruction, Analysis, and Visualisation are all in need of a detector description. These applications have several common but also many specific requirements for the detector description in order to build up their internal representations. To achieve this in a consistent and coherent manner a common source of information, the detector description database, will be consulted by each of the applications. The role and suitability of XML in the design of the detector description database in the scope of the CMS detector at the LHC is discussed. Different aspects such as data modelling capabilities of XML, tool support, integration to C++ representations of data models are treated and recent results of prototype implementations are presented

  15. Mean field theory for a balanced hypercolumn model of orientation selectivity in primary visual cortex

    CERN Document Server

    Lerchner, A; Hertz, J; Ahmadi, M

    2004-01-01

    We present a complete mean field theory for a balanced state of a simple model of an orientation hypercolumn. The theory is complemented by a description of a numerical procedure for solving the mean-field equations quantitatively. With our treatment, we can determine self-consistently both the firing rates and the firing correlations, without being restricted to specific neuron models. Here, we solve the analytically derived mean-field equations numerically for integrate-and-fire neurons. Several known key properties of orientation selective cortical neurons emerge naturally from the description: Irregular firing with statistics close to -- but not restricted to -- Poisson statistics; an almost linear gain function (firing frequency as a function of stimulus contrast) of the neurons within the network; and a contrast-invariant tuning width of the neuronal firing. We find that the irregularity in firing depends sensitively on synaptic strengths. If Fano factors are bigger than 1, then they are so for all stim...

  16. Treating JSON as a subset of XML

    NARCIS (Netherlands)

    S. Pemberton (Steven)

    2012-01-01

    textabstractXForms 1.0 was an XML technology originally designed as a replacement for HTML Forms. In addressing certain shortcomings of XForms 1.0, the next version, XForms 1.1 became far more than a forms language, but a declarative application language where application production time could be

  17. Enterprise Architecture Analysis with XML

    OpenAIRE

    Boer, Frank; Bonsangue, Marcello; Jacob, Joost; Stam, A.; Torre, Leon

    2005-01-01

    htmlabstractThis paper shows how XML can be used for static and dynamic analysis of architectures. Our analysis is based on the distinction between symbolic and semantic models of architectures. The core of a symbolic model consists of its signature that specifies symbolically its structural elements and their relationships. A semantic model is defined as a formal interpretation of the symbolic model. This provides a formal approach to the design of architectural description languages and a g...

  18. The CostGlue XML Schema

    OpenAIRE

    Furfari, Francesco; Potort?, Francesco; Savić, Dragan

    2008-01-01

    An XML schema for scientific metadata is described. It is used for the CostGlue archival program, developed in the framework of the European Union COST Action 285: "Modelling and simulation tools for research in emerging multi-service telecommunications". The schema is freely available under the GNU LGPL license at http://wnet.isti.cnr.it/software/costglue/schema/2007/CostGlue.xsd, or at its official repository, at http://lt.fe.uni-lj. si/costglue/schema/2007/costglue.xsd.

  19. Selected eating behaviours of girls and boys attending sport-oriented classes

    Science.gov (United States)

    Szeja, Nicola; Szczepańska, Elżbieta; Janion, Karolina; Szymkiewicz, Anna; Lenard, Biruta; Dudzik, Izabela; Kołdon, Anna

    Eating behaviours play a key role in lives of young people who stay physically active. They influence both their correct development and performance. Evaluation of selected eating behaviours of girls and boys attending sport-oriented classes and identification of differences between eating behaviours of studied groups. 460 students attending sport-oriented classes in Poland participated in the study. A questionnaire prepared by the author of the study was the research tool. The data was gathered in Microsoft Office Excel 2010 worksheet. Statistical analysis was made with the use of StatSoft, Inc. Statistica version 10.0. The questioned students most often had 4-5 meals a day- such an answer was given by 59.09% of the boys and 41.38% of the girls. 55.59% and 41.95% of them respectively had breakfast within 30 minutes from waking up and 41,96% of the girls and 39.51% of the boys had supper 2-3 hours before going to sleep. Whole meal bread and/or groats were most frequently consumed a few times a day as it was declared by 50.35% of the boys and 45.98% of the girls. The highest percentage of the respondents consumed vegetables at least once a day (31.61% of the girls and 31.47% of the boys). 44.83% of the girls and 40.9% of the boys declared eating fruit a few times a day. Studied eating behaviours of girls and boys in sport-oriented classes are largely wrong and require correction. The analysis of the gathered data indicated statistically significant differences between boys’ and girls’ eating behaviours, however, the boys’ habits were better.

  20. A browser-based tool for conversion between Fortran NAMELIST and XML/HTML

    Science.gov (United States)

    Naito, O.

    A browser-based tool for conversion between Fortran NAMELIST and XML/HTML is presented. It runs on an HTML5 compliant browser and generates reusable XML files to aid interoperability. It also provides a graphical interface for editing and annotating variables in NAMELIST, hence serves as a primitive code documentation environment. Although the tool is not comprehensive, it could be viewed as a test bed for integrating legacy codes into modern systems.

  1. A browser-based tool for conversion between Fortran NAMELIST and XML/HTML

    Directory of Open Access Journals (Sweden)

    O. Naito

    2017-01-01

    Full Text Available A browser-based tool for conversion between Fortran NAMELIST and XML/HTML is presented. It runs on an HTML5 compliant browser and generates reusable XML files to aid interoperability. It also provides a graphical interface for editing and annotating variables in NAMELIST, hence serves as a primitive code documentation environment. Although the tool is not comprehensive, it could be viewed as a test bed for integrating legacy codes into modern systems.

  2. An XML-based loose-schema approach to managing diagnostic data in heterogeneous formats

    Energy Technology Data Exchange (ETDEWEB)

    Naito, O., E-mail: naito.osamu@jaea.go.j [Japan Atomic Energy Agency, 801-1 Mukouyama, Naka, Ibaraki 311-0193 (Japan)

    2010-07-15

    An approach to managing diagnostic data in heterogenous formats by using XML-based (eXtensible Markup Language) tag files is discussed. The tag file functions like header information in ordinary data formats but it is separate from the main body of data, human readable, and self-descriptive. Thus all the necessary information for reading the contents of data can be obtained without prior information or reading the data body itself. In this paper, modeling of diagnostic data and its representation in XML are studied and a very primitive implementation of this approach in C++ is presented. The overhead of manipulating XML in a proof-of-principle code was found to be small. The merits, demerits, and possible extensions of this approach are also discussed.

  3. An XML-based loose-schema approach to managing diagnostic data in heterogeneous formats

    International Nuclear Information System (INIS)

    Naito, O.

    2010-01-01

    An approach to managing diagnostic data in heterogenous formats by using XML-based (eXtensible Markup Language) tag files is discussed. The tag file functions like header information in ordinary data formats but it is separate from the main body of data, human readable, and self-descriptive. Thus all the necessary information for reading the contents of data can be obtained without prior information or reading the data body itself. In this paper, modeling of diagnostic data and its representation in XML are studied and a very primitive implementation of this approach in C++ is presented. The overhead of manipulating XML in a proof-of-principle code was found to be small. The merits, demerits, and possible extensions of this approach are also discussed.

  4. Interpreting XML documents via an RDF schema

    NARCIS (Netherlands)

    Klein, Michel; Handschuh, Siegfried; Staab, Steffen

    2003-01-01

    One of the major problems in the realization of the vision of the ``Semantic Web''; is the transformation of existing web data into sources that can be processed and used by machines. This paper presents a procedure that can be used to turn XML documents into knowledge structures, by interpreting

  5. XML schemas for common bioinformatic data types and their application in workflow systems.

    Science.gov (United States)

    Seibel, Philipp N; Krüger, Jan; Hartmeier, Sven; Schwarzer, Knut; Löwenthal, Kai; Mersch, Henning; Dandekar, Thomas; Giegerich, Robert

    2006-11-06

    Today, there is a growing need in bioinformatics to combine available software tools into chains, thus building complex applications from existing single-task tools. To create such workflows, the tools involved have to be able to work with each other's data--therefore, a common set of well-defined data formats is needed. Unfortunately, current bioinformatic tools use a great variety of heterogeneous formats. Acknowledging the need for common formats, the Helmholtz Open BioInformatics Technology network (HOBIT) identified several basic data types used in bioinformatics and developed appropriate format descriptions, formally defined by XML schemas, and incorporated them in a Java library (BioDOM). These schemas currently cover sequence, sequence alignment, RNA secondary structure and RNA secondary structure alignment formats in a form that is independent of any specific program, thus enabling seamless interoperation of different tools. All XML formats are available at http://bioschemas.sourceforge.net, the BioDOM library can be obtained at http://biodom.sourceforge.net. The HOBIT XML schemas and the BioDOM library simplify adding XML support to newly created and existing bioinformatic tools, enabling these tools to interoperate seamlessly in workflow scenarios.

  6. XML schemas for common bioinformatic data types and their application in workflow systems

    Science.gov (United States)

    Seibel, Philipp N; Krüger, Jan; Hartmeier, Sven; Schwarzer, Knut; Löwenthal, Kai; Mersch, Henning; Dandekar, Thomas; Giegerich, Robert

    2006-01-01

    Background Today, there is a growing need in bioinformatics to combine available software tools into chains, thus building complex applications from existing single-task tools. To create such workflows, the tools involved have to be able to work with each other's data – therefore, a common set of well-defined data formats is needed. Unfortunately, current bioinformatic tools use a great variety of heterogeneous formats. Results Acknowledging the need for common formats, the Helmholtz Open BioInformatics Technology network (HOBIT) identified several basic data types used in bioinformatics and developed appropriate format descriptions, formally defined by XML schemas, and incorporated them in a Java library (BioDOM). These schemas currently cover sequence, sequence alignment, RNA secondary structure and RNA secondary structure alignment formats in a form that is independent of any specific program, thus enabling seamless interoperation of different tools. All XML formats are available at , the BioDOM library can be obtained at . Conclusion The HOBIT XML schemas and the BioDOM library simplify adding XML support to newly created and existing bioinformatic tools, enabling these tools to interoperate seamlessly in workflow scenarios. PMID:17087823

  7. TME2/342: The Role of the EXtensible Markup Language (XML) for Future Healthcare Application Development

    Science.gov (United States)

    Noelle, G; Dudeck, J

    1999-01-01

    Two years, since the World Wide Web Consortium (W3C) has published the first specification of the eXtensible Markup Language (XML) there exist some concrete tools and applications to work with XML-based data. In particular, new generation Web browsers offer great opportunities to develop new kinds of medical, web-based applications. There are several data-exchange formats in medicine, which have been established in the last years: HL-7, DICOM, EDIFACT and, in the case of Germany, xDT. Whereas communication and information exchange becomes increasingly important, the development of appropriate and necessary interfaces causes problems, rising costs and effort. It has been also recognised that it is difficult to define a standardised interchange format, for one of the major future developments in medical telematics: the electronic patient record (EPR) and its availability on the Internet. Whereas XML, especially in an industrial environment, is celebrated as a generic standard and a solution for all problems concerning e-commerce, in a medical context there are only few applications developed. Nevertheless, the medical environment is an appropriate area for building XML applications: as the information and communication management becomes increasingly important in medical businesses, the role of the Internet changes quickly from an information to a communication medium. The first XML based applications in healthcare show us the advantage for a future engagement of the healthcare industry in XML: such applications are open, easy to extend and cost-effective. Additionally, XML is much more than a simple new data interchange format: many proposals for data query (XQL), data presentation (XSL) and other extensions have been proposed to the W3C and partly realised in medical applications.

  8. Implementing XML Schema Naming and Design Rules

    Energy Technology Data Exchange (ETDEWEB)

    Lubell, Joshua [National Institute of Standards and Technology (NIST); Kulvatunyou, Boonserm [ORNL; Morris, Katherine [National Institute of Standards and Technology (NIST); Harvey, Betty [Electronic Commerce Connection, Inc.

    2006-08-01

    We are building a methodology and tool kit for encoding XML schema Naming and Design Rules (NDRs) in a computer-interpretable fashion, enabling automated rule enforcement and improving schema quality. Through our experience implementing rules from various NDR specifications, we discuss some issues and offer practical guidance to organizations grappling with NDR development.

  9. Distribution of orientation selectivity in recurrent networks of spiking neurons with different random topologies.

    Science.gov (United States)

    Sadeh, Sadra; Rotter, Stefan

    2014-01-01

    Neurons in the primary visual cortex are more or less selective for the orientation of a light bar used for stimulation. A broad distribution of individual grades of orientation selectivity has in fact been reported in all species. A possible reason for emergence of broad distributions is the recurrent network within which the stimulus is being processed. Here we compute the distribution of orientation selectivity in randomly connected model networks that are equipped with different spatial patterns of connectivity. We show that, for a wide variety of connectivity patterns, a linear theory based on firing rates accurately approximates the outcome of direct numerical simulations of networks of spiking neurons. Distance dependent connectivity in networks with a more biologically realistic structure does not compromise our linear analysis, as long as the linearized dynamics, and hence the uniform asynchronous irregular activity state, remain stable. We conclude that linear mechanisms of stimulus processing are indeed responsible for the emergence of orientation selectivity and its distribution in recurrent networks with functionally heterogeneous synaptic connectivity.

  10. A Simple XML Producer-Consumer Protocol

    Science.gov (United States)

    Smith, Warren; Gunter, Dan; Quesnel, Darcy; Biegel, Bryan (Technical Monitor)

    2001-01-01

    There are many different projects from government, academia, and industry that provide services for delivering events in distributed environments. The problem with these event services is that they are not general enough to support all uses and they speak different protocols so that they cannot interoperate. We require such interoperability when we, for example, wish to analyze the performance of an application in a distributed environment. Such an analysis might require performance information from the application, computer systems, networks, and scientific instruments. In this work we propose and evaluate a standard XML-based protocol for the transmission of events in distributed systems. One recent trend in government and academic research is the development and deployment of computational grids. Computational grids are large-scale distributed systems that typically consist of high-performance compute, storage, and networking resources. Examples of such computational grids are the DOE Science Grid, the NASA Information Power Grid (IPG), and the NSF Partnerships for Advanced Computing Infrastructure (PACIs). The major effort to deploy these grids is in the area of developing the software services to allow users to execute applications on these large and diverse sets of resources. These services include security, execution of remote applications, managing remote data, access to information about resources and services, and so on. There are several toolkits for providing these services such as Globus, Legion, and Condor. As part of these efforts to develop computational grids, the Global Grid Forum is working to standardize the protocols and APIs used by various grid services. This standardization will allow interoperability between the client and server software of the toolkits that are providing the grid services. The goal of the Performance Working Group of the Grid Forum is to standardize protocols and representations related to the storage and distribution of

  11. 78 FR 28732 - Revisions to Electric Quarterly Report Filing Process; Availability of Draft XML Schema

    Science.gov (United States)

    2013-05-16

    ...] Revisions to Electric Quarterly Report Filing Process; Availability of Draft XML Schema AGENCY: Federal... the SUPPLEMENTARY INFORMATION Section below for details. DATES: The XML is now available at the links mentioned below. FOR FURTHER INFORMATION CONTACT: Christina Switzer, Office of the General Counsel, Federal...

  12. The realization of the storage of XML and middleware-based data of electronic medical records

    International Nuclear Information System (INIS)

    Liu Shuzhen; Gu Peidi; Luo Yanlin

    2007-01-01

    In this paper, using the technology of XML and middleware to design and implement a unified electronic medical records storage archive management system and giving a common storage management model. Using XML to describe the structure of electronic medical records, transform the medical data from traditional 'business-centered' medical information into a unified 'patient-centered' XML document and using middleware technology to shield the types of the databases at different departments of the hospital and to complete the information integration of the medical data which scattered in different databases, conducive to information sharing between different hospitals. (authors)

  13. Semantic validation of standard-based electronic health record documents with W3C XML schema.

    Science.gov (United States)

    Rinner, C; Janzek-Hawlat, S; Sibinovic, S; Duftschmid, G

    2010-01-01

    The goal of this article is to examine whether W3C XML Schema provides a practicable solution for the semantic validation of standard-based electronic health record (EHR) documents. With semantic validation we mean that the EHR documents are checked for conformance with the underlying archetypes and reference model. We describe an approach that allows XML Schemas to be derived from archetypes based on a specific naming convention. The archetype constraints are augmented with additional components of the reference model within the XML Schema representation. A copy of the EHR document that is transformed according to the before-mentioned naming convention is used for the actual validation against the XML Schema. We tested our approach by semantically validating EHR documents conformant to three different ISO/EN 13606 archetypes respective to three sections of the CDA implementation guide "Continuity of Care Document (CCD)" and an implementation guide for diabetes therapy data. We further developed a tool to automate the different steps of our semantic validation approach. For two particular kinds of archetype prescriptions, individual transformations are required for the corresponding EHR documents. Otherwise, a fully generic validation is possible. In general, we consider W3C XML Schema as a practicable solution for the semantic validation of standard-based EHR documents.

  14. XML: James Webb Space Telescope Database Issues, Lessons, and Status

    Science.gov (United States)

    Detter, Ryan; Mooney, Michael; Fatig, Curtis

    2003-01-01

    This paper will present the current concept using extensible Markup Language (XML) as the underlying structure for the James Webb Space Telescope (JWST) database. The purpose of using XML is to provide a JWST database, independent of any portion of the ground system, yet still compatible with the various systems using a variety of different structures. The testing of the JWST Flight Software (FSW) started in 2002, yet the launch is scheduled for 2011 with a planned 5-year mission and a 5-year follow on option. The initial database and ground system elements, including the commands, telemetry, and ground system tools will be used for 19 years, plus post mission activities. During the Integration and Test (I&T) phases of the JWST development, 24 distinct laboratories, each geographically dispersed, will have local database tools with an XML database. Each of these laboratories database tools will be used for the exporting and importing of data both locally and to a central database system, inputting data to the database certification process, and providing various reports. A centralized certified database repository will be maintained by the Space Telescope Science Institute (STScI), in Baltimore, Maryland, USA. One of the challenges for the database is to be flexible enough to allow for the upgrade, addition or changing of individual items without effecting the entire ground system. Also, using XML should allow for the altering of the import and export formats needed by the various elements, tracking the verification/validation of each database item, allow many organizations to provide database inputs, and the merging of the many existing database processes into one central database structure throughout the JWST program. Many National Aeronautics and Space Administration (NASA) projects have attempted to take advantage of open source and commercial technology. Often this causes a greater reliance on the use of Commercial-Off-The-Shelf (COTS), which is often limiting

  15. Cytometry metadata in XML

    Science.gov (United States)

    Leif, Robert C.; Leif, Stephanie H.

    2016-04-01

    Introduction: The International Society for Advancement of Cytometry (ISAC) has created a standard for the Minimum Information about a Flow Cytometry Experiment (MIFlowCyt 1.0). CytometryML will serve as a common metadata standard for flow and image cytometry (digital microscopy). Methods: The MIFlowCyt data-types were created, as is the rest of CytometryML, in the XML Schema Definition Language (XSD1.1). The datatypes are primarily based on the Flow Cytometry and the Digital Imaging and Communication (DICOM) standards. A small section of the code was formatted with standard HTML formatting elements (p, h1, h2, etc.). Results:1) The part of MIFlowCyt that describes the Experimental Overview including the specimen and substantial parts of several other major elements has been implemented as CytometryML XML schemas (www.cytometryml.org). 2) The feasibility of using MIFlowCyt to provide the combination of an overview, table of contents, and/or an index of a scientific paper or a report has been demonstrated. Previously, a sample electronic publication, EPUB, was created that could contain both MIFlowCyt metadata as well as the binary data. Conclusions: The use of CytometryML technology together with XHTML5 and CSS permits the metadata to be directly formatted and together with the binary data to be stored in an EPUB container. This will facilitate: formatting, data- mining, presentation, data verification, and inclusion in structured research, clinical, and regulatory documents, as well as demonstrate a publication's adherence to the MIFlowCyt standard, promote interoperability and should also result in the textual and numeric data being published using web technology without any change in composition.

  16. XML for Detector Description at GLAST

    Energy Technology Data Exchange (ETDEWEB)

    Bogart, Joanne

    2002-04-30

    The problem of representing a detector in a form which is accessible to a variety of applications, allows retrieval of information in ways which are natural to those applications, and is maintainable has been vexing physicists for some time. Although invented to address an entirely different problem domain, the document markup meta-language XML is well-suited to detector description. This paper describes its use for a GLAST detector.

  17. XML for detector description at GLAST

    International Nuclear Information System (INIS)

    Bogart, J.; Favretto, D.; Giannitrapani, R.

    2001-01-01

    The problem of representing a detector in a form which is accessible to a variety of applications, allows retrieval of information in ways which are natural to those applications, and is maintainable has been vexing physicists for some time. Although invented to address an entirely different problem domain, the document markup meta-language XML is well-suited to detector description. The author describes its use for a GLAST detector

  18. XML for Detector Description at GLAST

    International Nuclear Information System (INIS)

    Bogart, Joanne

    2002-01-01

    The problem of representing a detector in a form which is accessible to a variety of applications, allows retrieval of information in ways which are natural to those applications, and is maintainable has been vexing physicists for some time. Although invented to address an entirely different problem domain, the document markup meta-language XML is well-suited to detector description. This paper describes its use for a GLAST detector

  19. Role of inhibition in the specification of orientation selectivity of cells in the cat striate cortex.

    Science.gov (United States)

    Bonds, A B

    1989-01-01

    Mechanisms supporting orientation selectivity of cat striate cortical cells were studied by stimulation with two superimposed sine-wave gratings of different orientations. One grating (base) generated a discharge of known amplitude which could be modified by the second grating (mask). Masks presented at nonoptimal orientations usually reduced the base-generated response, but the degree of reduction varied widely between cells. Cells with narrow orientation tuning tended to be more susceptible to mask presence than broadly tuned cells; similarly, simple cells generally showed more response reduction than did complex cells. The base and mask stimuli were drifted at different temporal frequencies which, in simple cells, permitted the identification of individual response components from each stimulus. This revealed that the reduction of the base response by the mask usually did not vary regularly with mask orientation, although response facilitation from the mask was orientation selective. In some sharply tuned simple cells, response reduction had clear local maxima near the limits of the cell's orientation-tuning function. Response reduction resulted from a nearly pure rightward shift of the response versus log contrast function. The lowest mask contrast yielding reduction was within 0.1-0.3 log unit of the lowest contrast effective for excitation. The temporal-frequency bandpass of the response-reduction mechanism resembled that of most cortical cells. The spatial-frequency bandpass was much broader than is typical for single cortical cells, spanning essentially the entire visual range of the cat. These findings are compatible with a model in which weak intrinsic orientation-selective excitation is enhanced in two stages: (1) control of threshold by nonorientation-selective inhibition that is continuously dependent on stimulus contrast; and (2) in the more narrowly tuned cells, orientation-selective inhibition that has local maxima serving to increase the slope of

  20. An Adaptable Neuromorphic Model of Orientation Selectivity Based On Floating Gate Dynamics

    Directory of Open Access Journals (Sweden)

    Priti eGupta

    2014-04-01

    Full Text Available The biggest challenge that the neuromorphic community faces today is to build systems that can be considered truly cognitive. Adaptation and self-organization are the two basic principles that underlie any cognitive function that the brain performs. If we can replicate this behavior in hardware, we move a step closer to our goal of having cognitive neuromorphic systems. Adaptive feature selectivity is a mechanism by which nature optimizes resources so as to have greater acuity for more abundant features. Developing neuromorphic feature maps can help design generic machines that can emulate this adaptive behavior. Most neuromorphic models that have attempted to build self-organizing systems, follow the approach of modeling abstract theoretical frameworks in hardware. While this is good from a modeling and analysis perspective, it may not lead to the most efficient hardware. On the other hand, exploiting hardware dynamics to build adaptive systems rather than forcing the hardware to behave like mathematical equations, seems to be a more robust methodology when it comes to developing actual hardware for real world applications. In this paper we use a novel time-staggered Winner Take All circuit, that exploits the adaptation dynamics of floating gate transistors, to model an adaptive cortical cell that demonstrates Orientation Selectivity, a well-known biological phenomenon observed in the visual cortex. The cell performs competitive learning, refining its weights in response to input patterns resembling different oriented bars, becoming selective to a particular oriented pattern. Different analysis performed on the cell such as orientation tuning, application of abnormal inputs, response to spatial frequency and periodic patterns reveal close similarity between our cell and its biological counterpart. Embedded in a RC grid, these cells interact diffusively exhibiting cluster formation, making way for adaptively building orientation selective maps

  1. XML/TEI Stand-off Markup. One step beyond.

    NARCIS (Netherlands)

    Spadini, E.; Turska, Magdalena

    2018-01-01

    Stand-off markup is widely considered as a possible solution for overcoming the limitation of inline XML markup, primarily dealing with multiple overlapping hierarchies. Considering previous contributions on the subject and implementations of stand-off markup, we propose a new TEI-based model for

  2. A Database Approach to Content-based XML retrieval

    NARCIS (Netherlands)

    Hiemstra, Djoerd

    2003-01-01

    This paper describes a rst prototype system for content-based retrieval from XML data. The system's design supports both XPath queries and complex information retrieval queries based on a language modelling approach to information retrieval. Evaluation using the INEX benchmark shows that it is

  3. An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results

    Directory of Open Access Journals (Sweden)

    Arthur John

    2004-01-01

    Full Text Available Abstract Background Many proteomics initiatives require a seamless bioinformatics integration of a range of analytical steps between sample collection and systems modeling immediately assessable to the participants involved in the process. Proteomics profiling by 2D gel electrophoresis to the putative identification of differentially expressed proteins by comparison of mass spectrometry results with reference databases, includes many components of sample processing, not just analysis and interpretation, are regularly revisited and updated. In order for such updates and dissemination of data, a suitable data structure is needed. However, there are no such data structures currently available for the storing of data for multiple gels generated through a single proteomic experiments in a single XML file. This paper proposes a data structure based on XML standards to fill the void that exists between data generated by proteomics experiments and storing of data. Results In order to address the resulting procedural fluidity we have adopted and implemented a data model centered on the concept of annotated gel (AG as the format for delivery and management of 2D Gel electrophoresis results. An eXtensible Markup Language (XML schema is proposed to manage, analyze and disseminate annotated 2D Gel electrophoresis results. The structure of AG objects is formally represented using XML, resulting in the definition of the AGML syntax presented here. Conclusion The proposed schema accommodates data on the electrophoresis results as well as the mass-spectrometry analysis of selected gel spots. A web-based software library is being developed to handle data storage, analysis and graphic representation. Computational tools described will be made available at http://bioinformatics.musc.edu/agml. Our development of AGML provides a simple data structure for storing 2D gel electrophoresis data.

  4. An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results.

    Science.gov (United States)

    Stanislaus, Romesh; Jiang, Liu Hong; Swartz, Martha; Arthur, John; Almeida, Jonas S

    2004-01-29

    Many proteomics initiatives require a seamless bioinformatics integration of a range of analytical steps between sample collection and systems modeling immediately assessable to the participants involved in the process. Proteomics profiling by 2D gel electrophoresis to the putative identification of differentially expressed proteins by comparison of mass spectrometry results with reference databases, includes many components of sample processing, not just analysis and interpretation, are regularly revisited and updated. In order for such updates and dissemination of data, a suitable data structure is needed. However, there are no such data structures currently available for the storing of data for multiple gels generated through a single proteomic experiments in a single XML file. This paper proposes a data structure based on XML standards to fill the void that exists between data generated by proteomics experiments and storing of data. In order to address the resulting procedural fluidity we have adopted and implemented a data model centered on the concept of annotated gel (AG) as the format for delivery and management of 2D Gel electrophoresis results. An eXtensible Markup Language (XML) schema is proposed to manage, analyze and disseminate annotated 2D Gel electrophoresis results. The structure of AG objects is formally represented using XML, resulting in the definition of the AGML syntax presented here. The proposed schema accommodates data on the electrophoresis results as well as the mass-spectrometry analysis of selected gel spots. A web-based software library is being developed to handle data storage, analysis and graphic representation. Computational tools described will be made available at http://bioinformatics.musc.edu/agml. Our development of AGML provides a simple data structure for storing 2D gel electrophoresis data.

  5. Comparing Emerging XML Based Formats from a Multi-discipline Perspective

    Science.gov (United States)

    Sawyer, D. M.; Reich, L. I.; Nikhinson, S.

    2002-12-01

    This paper analyzes the similarity and differences among several examples of an emerging generation of Scientific Data Formats that are based on XML technologies. Some of the factors evaluated include the goals of these efforts, the data models, and XML technologies used, and the maturity of currently available software. This paper then investigates the practicality of developing a single set of structural data objects and basic scientific concepts, such as units, that could be used across discipline boundaries and extended by disciplines and missions to create Scientific Data Formats for their communities. This analysis is partly based on an effort sponsored by the ESDIS office at GSFC to compare the Earth Science Markup Language (ESML) and the eXtensible Data Format( XDF), two members of this new generation of XML based Data Description Languages that have been developed by NASA funded efforts in recent years. This paper adds FITSML and potentially CDFML to the list of XML based Scientific Data Formats discussed. This paper draws heavily a Formats Evolution Process Committee (http://ssdoo.gsfc.nasa.gov/nost/fep/) draft white paper primarily developed by Lou Reich, Mike Folk and Don Sawyer to assist the Space Science community in understanding Scientific Data Formats. One of primary conclusions of that paper is that a scientific data format object model should be examined along two basic axes. The first is the complexity of the computer/mathematical data types supported and the second is the level of scientific domain specialization incorporated. This paper also discusses several of the issues that affect the decision on whether to implement a discipline or project specific Scientific Data Format as a formal extension of a general purpose Scientific Data Format or to implement the APIs independently.

  6. Towards P2P XML Database Technology

    NARCIS (Netherlands)

    Y. Zhang (Ying)

    2007-01-01

    textabstractTo ease the development of data-intensive P2P applications, we envision a P2P XML Database Management System (P2P XDBMS) that acts as a database middle-ware, providing a uniform database abstraction on top of a dynamic set of distributed data sources. In this PhD work, we research which

  7. Standardization of XML Database Exchanges and the James Webb Space Telescope Experience

    Science.gov (United States)

    Gal-Edd, Jonathan; Detter, Ryan; Jones, Ron; Fatig, Curtis C.

    2007-01-01

    Personnel from the National Aeronautics and Space Administration (NASA) James Webb Space Telescope (JWST) Project have been working with various standard communities such the Object Management Group (OMG) and the Consultative Committee for Space Data Systems (CCSDS) to assist in the definition of a common extensible Markup Language (XML) for database exchange format. The CCSDS and OMG standards are intended for the exchange of core command and telemetry information, not for all database information needed to exercise a NASA space mission. The mission-specific database, containing all the information needed for a space mission, is translated from/to the standard using a translator. The standard is meant to provide a system that encompasses 90% of the information needed for command and telemetry processing. This paper will discuss standardization of the XML database exchange format, tools used, and the JWST experience, as well as future work with XML standard groups both commercial and government.

  8. A Petri Net-Based Software Process Model for Developing Process-Oriented Information Systems

    Science.gov (United States)

    Li, Yu; Oberweis, Andreas

    Aiming at increasing flexibility, efficiency, effectiveness, and transparency of information processing and resource deployment in organizations to ensure customer satisfaction and high quality of products and services, process-oriented information systems (POIS) represent a promising realization form of computerized business information systems. Due to the complexity of POIS, explicit and specialized software process models are required to guide POIS development. In this chapter we characterize POIS with an architecture framework and present a Petri net-based software process model tailored for POIS development with consideration of organizational roles. As integrated parts of the software process model, we also introduce XML nets, a variant of high-level Petri nets as basic methodology for business processes modeling, and an XML net-based software toolset providing comprehensive functionalities for POIS development.

  9. WaterML: an XML Language for Communicating Water Observations Data

    Science.gov (United States)

    Maidment, D. R.; Zaslavsky, I.; Valentine, D.

    2007-12-01

    One of the great impediments to the synthesis of water information is the plethora of formats used to publish such data. Each water agency uses its own approach. XML (eXtended Markup Languages) are generalizations of Hypertext Markup Language to communicate specific kinds of information via the internet. WaterML is an XML language for water observations data - streamflow, water quality, groundwater levels, climate, precipitation and aquatic biology data, recorded at fixed, point locations as a function of time. The Hydrologic Information System project of the Consortium of Universities for the Advancement of Hydrologic Science, Inc (CUAHSI) has defined WaterML and prepared a set of web service functions called WaterOneFLow that use WaterML to provide information about observation sites, the variables measured there and the values of those measurments. WaterML has been submitted to the Open GIS Consortium for harmonization with its standards for XML languages. Academic investigators at a number of testbed locations in the WATERS network are providing data in WaterML format using WaterOneFlow web services. The USGS and other federal agencies are also working with CUAHSI to similarly provide access to their data in WaterML through WaterOneFlow services.

  10. Absolute Molecular Orientation of Isopropanol at Ceria (100) Surfaces: Insight into Catalytic Selectivity from the Interfacial Structure

    Energy Technology Data Exchange (ETDEWEB)

    Doughty, Benjamin [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Goverapet Srinivasan, Sriram [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Indian Inst. of Technology (IIT), Rajasthan (India); Bryantsev, Vyacheslav S. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Lee, Dongkyu [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Lee, Ho Nyung [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Ma, Ying-Zhong [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Lutterman, Daniel A. [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States)

    2017-06-12

    The initial mechanistic steps underlying heterogeneous chemical catalysis can be described in a framework where the composition, structure, and orientation of molecules adsorbed to reactive interfaces are known. However, extracting this vital information is the limiting step in most cases due in part to challenges in probing the interfacial monolayer with enough chemical specificity to characterize the surface molecular constituents. These challenges are exacerbated at complex or spatially heterogeneous interfaces where competing processes and a distribution of local environments can uniquely drive chemistry. To address these limitations, this work presents a distinctive combination of materials synthesis, surface specific optical experiments, and theory to probe and understand molecular structure at catalytic interfaces. Specifically, isopropanol was adsorbed to surfaces of the model CeO2 catalyst that were synthesized with only the (100) facet exposed. Vibrational sum-frequency generation was used to probe the molecular monolayer, and with the guidance of density functional theory calculations, was used to extract the structure and absolute molecular orientation of isopropanol at the CeO2 (100) surface. Our results show that isopropanol is readily deprotonated at the surface, and through the measured absolute molecular orientation of isopropanol, we obtain new insight into the selectivity of the (100) surface to form propylene. Our findings reveal key insight into the chemical and physical phenomena taking place at pristine interfaces thereby pointing to intuitive structural arguments to describe catalytic selectivity in more complex systems.

  11. XML Schema of PaGE-OM: page-om.xsd [

    Lifescience Database Archive (English)

    Full Text Available one or more variation assays (e.g. assay multiplexing Assay_set). Note: These are optional laboratory specif...fication is used for data exchange formats (e.g. xml-schema). Therefore, it has optional direct associations

  12. STUDY CONCERNING THE ELABORATION OF CERTAIN ORIENTATION MODELS AND THE INITIAL SELECTION FOR SPEED SKATING

    Directory of Open Access Journals (Sweden)

    Vaida Marius

    2009-12-01

    Full Text Available In realizing this study I started from the premise that, by elaborating certain orientation models and initial selection for the speed skating and their application will appear superior results, necessary results, taking into account the actual evolution of the high performance sport in general and of the speed skating, in special.The target of this study has been the identification of an orientation model and a complete initial selection that should be based on the favorable aptitudes of the speed skating. On the basis of the made researched orientation models and initial selection has been made, things that have been demonstrated experimental that are not viable, the study starting from the data of the 120 copies, the complete experiment being made by 32 subjects separated in two groups, one using the proposed model and the other formed fromsubjects randomly selected.These models can serve as common working instruments both for the orientation process and for the initial selection one, being able to integrate in the proper practical activity, these being used easily both by coaches that are in charge with the proper selection of the athletes but also by the physical education teachers orschool teachers that are in contact with children of an early age.

  13. XML for nuclear instrument control and monitoring: an approach towards standardisation

    International Nuclear Information System (INIS)

    Bharade, S.K.; Ananthakrishnan, T.S.; Kataria, S.K.; Singh, S.K.

    2004-01-01

    Communication among heterogeneous system with applications running under different operating systems and applications developed under different platforms has undergone rapid changes due to the adoption of XML standards. These are being developed for different industries like Chemical, Medical, Commercial etc. The High Energy Physics community has already a standard for exchange of data among different applications , under heterogeneous distributed systems like the CMS Data Acquisition System. There are a large number of Nuclear Instruments supplied by different manufactures which are increasingly getting connected. This approach is getting wider acceptance in instruments at reactor sites, accelerator sites and complex nuclear experiments -especially at centres like CERN. In order for these instruments to be able to describe the data which is available from them in a platform independent manner XML approach has been developed. This paper is the first attempt at Electronics Division for proposing an XML standard for control, monitoring, Data Acquisition and Analysis generated by Nuclear Instruments at Accelerator sites, Nuclear Reactor plant and Laboratory. The gamut of Nuclear Instruments include Multichannel Analysers, Health Physics Instruments, Accelerator Control Systems, Reactor Regulating systems, Flux mapping Systems etc. (author)

  14. PFTijah: text search in an XML database system

    NARCIS (Netherlands)

    Hiemstra, Djoerd; Rode, H.; van Os, R.; Flokstra, Jan

    2006-01-01

    This paper introduces the PFTijah system, a text search system that is integrated with an XML/XQuery database management system. We present examples of its use, we explain some of the system internals, and discuss plans for future work. PFTijah is part of the open source release of MonetDB/XQuery.

  15. SU-E-T-327: The Update of a XML Composing Tool for TrueBeam Developer Mode

    International Nuclear Information System (INIS)

    Yan, Y; Mao, W; Jiang, S

    2014-01-01

    Purpose: To introduce a major upgrade of a novel XML beam composing tool to scientists and engineers who strive to translate certain capabilities of TrueBeam Developer Mode to future clinical benefits of radiation therapy. Methods: TrueBeam Developer Mode provides the users with a test bed for unconventional plans utilizing certain unique features not accessible at the clinical mode. To access the full set of capabilities, a XML beam definition file accommodating all parameters including kV/MV imaging triggers in the plan can be locally loaded at this mode, however it is difficult and laborious to compose one in a text editor. In this study, a stand-along interactive XML beam composing application, TrueBeam TeachMod, was developed on Windows platforms to assist users in making their unique plans in a WYSWYG manner. A conventional plan can be imported in a DICOM RT object as the start of the beam editing process in which trajectories of all axes of a TrueBeam machine can be modified to the intended values at any control point. TeachMod also includes libraries of predefined imaging and treatment procedures to further expedite the process. Results: The TeachMod application is a major of the TeachMod module within DICOManTX. It fully supports TrueBeam 2.0. Trajectories of all axes including all MLC leaves can be graphically rendered and edited as needed. The time for XML beam composing has been reduced to a negligible amount regardless the complexity of the plan. A good understanding of XML language and TrueBeam schema is not required though preferred. Conclusion: Creating XML beams manually in a text editor will be a lengthy error-prone process for sophisticated plans. A XML beam composing tool is highly desirable for R and D activities. It will bridge the gap between scopes of TrueBeam capabilities and their clinical application potentials

  16. A Novel Approach for Configuring The Stimulator of A BCI Framework Using XML

    Directory of Open Access Journals (Sweden)

    Indar Sugiarto

    2009-08-01

    Full Text Available In a working BCI framework, all aspects must be considered as an integral part that contributes to the successful operation of a BCI system. This also includes the development of robust but flexible stimulator, especially the one that closely related to the feedback of a BCI system. This paper describes a novel approach in providing flexible visual stimulator using XML which has been applied for a BCI (brain-computer interface framework. Using XML file format for configuring the visual stimulator of a BCI system, we can develop BCI applications which can accommodate many experiment strategies in BCI research. The BCI framework and its configuration platform is developed using C++ programming language which incorporate Qt’s most powerful XML parser named QXmlStream. The implementation and experiment shows that the XML configuration file can be well executed within the proposed BCI framework. Beside its capability in presenting flexible flickering frequencies and text formatting for SSVEP-based BCI, the configuration platform also provides 3 shapes, 16 colors, and 5 distinct feedback bars. It is not necessary to increase the number of shapes nor colors since those parameters are less important for the BCI stimulator. The proposed method can then be extended to enhance the usability of currently existed BCI framework such as BF++ Toys and BCI 2000.

  17. A Whiter Shade of Grey: A new approach to archaeological grey literature using the XML version of the TEI Guidelines

    Directory of Open Access Journals (Sweden)

    Gail Falkingham

    2005-04-01

    detail to which the reports' structure and content has been encoded has been influenced principally by a review of user needs identified by recent national surveys and the potential for export of data for the population of other heritage datasets. Through the application of CSS and XSL stylesheets, the case study demonstrates how the reports and their content may be displayed in different ways and how selected data may be extracted from the text for input into other systems, such as Historic Environment Records and the OASIS Project database. The author came to this project as a novice in the use of XML and XSLT, and learnt far more as the case study progressed. Whilst it has been possible to achieve the desired aims, it is acknowledged that this is just a starting point; more advanced users of XSLT will, no doubt, be able to produce more sophisticated ways of applying styling and transformation. Nevertheless, it is hoped that this exploration of the potential of archaeological document markup will encourage others to use and experiment with XML. The practical elements of this paper demonstrate how XML and XSLT have the power and flexibility to open up new possibilities for the presentation of grey literature on the Web, and for the repurposing of report content, above and beyond those achievable with the proprietary file formats favoured at present. There is national interest in, and call for, the development of new methods of electronic publication for archaeological reports; it is hoped that this article will contribute to this debate.

  18. Domain Modeling and Application Development of an Archetype- and XML-based EHRS. Practical Experiences and Lessons Learnt.

    Science.gov (United States)

    Kropf, Stefan; Chalopin, Claire; Lindner, Dirk; Denecke, Kerstin

    2017-06-28

    Access to patient data within the hospital or between hospitals is still problematic since a variety of information systems is in use applying different vendor specific terminologies and underlying knowledge models. Beyond, the development of electronic health record systems (EHRSs) is time and resource consuming. Thus, there is a substantial need for a development strategy of standardized EHRSs. We are applying a reuse-oriented process model and demonstrate its feasibility and realization on a practical medical use case, which is an EHRS holding all relevant data arising in the context of treatment of tumors of the sella region. In this paper, we describe the development process and our practical experiences. Requirements towards the development of the EHRS were collected by interviews with a neurosurgeon and patient data analysis. For modelling of patient data, we selected openEHR as standard and exploited the software tools provided by the openEHR foundation. The patient information model forms the core of the development process, which comprises the EHR generation and the implementation of an EHRS architecture. Moreover, a reuse-oriented process model from the business domain was adapted to the development of the EHRS. The reuse-oriented process model is a model for a suitable abstraction of both, modeling and development of an EHR centralized EHRS. The information modeling process resulted in 18 archetypes that were aggregated in a template and built the boilerplate of the model driven development. The EHRs and the EHRS were developed by openEHR and W3C standards, tightly supported by well-established XML techniques. The GUI of the final EHRS integrates and visualizes information from various examinations, medical reports, findings and laboratory test results. We conclude that the development of a standardized overarching EHR and an EHRS is feasible using openEHR and W3C standards, enabling a high degree of semantic interoperability. The standardized

  19. Orientation selection process during the early stage of cubic dendrite growth: A phase-field crystal study

    International Nuclear Information System (INIS)

    Tang Sai; Wang Zhijun; Guo Yaolin; Wang Jincheng; Yu Yanmei; Zhou Yaohe

    2012-01-01

    Using the phase-field crystal model, we investigate the orientation selection of the cubic dendrite growth at the atomic scale. Our simulation results reproduce how a face-centered cubic (fcc) octahedral nucleus and a body-centered cubic (bcc) truncated-rhombic dodecahedral nucleus choose the preferred growth direction and then evolve into the dendrite pattern. The interface energy anisotropy inherent in the fcc crystal structure leads to the fastest growth velocity in the 〈1 0 0〉 directions. New { 1 1 1} atomic layers prefer to nucleate at positions near the tips of the fcc octahedron, which leads to the directed growth of the fcc dendrite tips in the 〈1 0 0〉 directions. A similar orientation selection process is also found during the early stage of bcc dendrite growth. The orientation selection regime obtained by phase-field crystal simulation is helpful for understanding the orientation selection processes of real dendrite growth.

  20. Semi-automated XML markup of biosystematic legacy literature with the GoldenGATE editor.

    Science.gov (United States)

    Sautter, Guido; Böhm, Klemens; Agosti, Donat

    2007-01-01

    Today, digitization of legacy literature is a big issue. This also applies to the domain of biosystematics, where this process has just started. Digitized biosystematics literature requires a very precise and fine grained markup in order to be useful for detailed search, data linkage and mining. However, manual markup on sentence level and below is cumbersome and time consuming. In this paper, we present and evaluate the GoldenGATE editor, which is designed for the special needs of marking up OCR output with XML. It is built in order to support the user in this process as far as possible: Its functionality ranges from easy, intuitive tagging through markup conversion to dynamic binding of configurable plug-ins provided by third parties. Our evaluation shows that marking up an OCR document using GoldenGATE is three to four times faster than with an off-the-shelf XML editor like XML-Spy. Using domain-specific NLP-based plug-ins, these numbers are even higher.

  1. IEEE 1451.1 Standard and XML Web Services: a Powerful Combination to Build Distributed Measurement and Control Systems

    OpenAIRE

    Viegas, Vítor; Pereira, José Dias; Girão, P. Silva

    2006-01-01

    In 2005, we presented the NCAP/XML, a prototype of NCAP (Network Capable Application Processor) that runs under the .NET Framework and makes available its functionality through a set of Web Services using XML (eXtended Markup Language). Giving continuity to this project, it is time to explain how to use the NCAP/XML to build a Distributed Measurement and Control System (DMCS) compliant with the 1451.1 Std. This paper is divided in two main parts: in the first part, we present the new software...

  2. New XML-Based Files: Implications for Forensics

    Science.gov (United States)

    2009-04-01

    previously unknown social networks.4 We can use unique identi!ers that survived copying and pasting to show plagiarism . Unique identi!ers can also raise...the ODF and OOX speci!- cations to standards bodies, surprisingly few technical articles have published details about the new XML document !le...Sharp, George Dinolt, Beth Rosen- berg, and the anonymous reviewers for their comments on previous versions of this article . This work was funded in

  3. Adding Hierarchical Objects to Relational Database General-Purpose XML-Based Information Managements

    Science.gov (United States)

    Lin, Shu-Chun; Knight, Chris; La, Tracy; Maluf, David; Bell, David; Tran, Khai Peter; Gawdiak, Yuri

    2006-01-01

    NETMARK is a flexible, high-throughput software system for managing, storing, and rapid searching of unstructured and semi-structured documents. NETMARK transforms such documents from their original highly complex, constantly changing, heterogeneous data formats into well-structured, common data formats in using Hypertext Markup Language (HTML) and/or Extensible Markup Language (XML). The software implements an object-relational database system that combines the best practices of the relational model utilizing Structured Query Language (SQL) with those of the object-oriented, semantic database model for creating complex data. In particular, NETMARK takes advantage of the Oracle 8i object-relational database model using physical-address data types for very efficient keyword searches of records across both context and content. NETMARK also supports multiple international standards such as WEBDAV for drag-and-drop file management and SOAP for integrated information management using Web services. The document-organization and -searching capabilities afforded by NETMARK are likely to make this software attractive for use in disciplines as diverse as science, auditing, and law enforcement.

  4. Phase II-SOF Knowledge Coupler-Based Phase I XML Schema

    National Research Council Canada - National Science Library

    Whitlock, Warren L

    2005-01-01

    ... a list of diagnostic choices in an XML-tagged database. An analysis of the search function indicates that the native search capability of the SOFMH does not inherently contain the requirements to sustain a diagnostic tool...

  5. Defining the XML schema matching problem for a personal schema based query answering system

    OpenAIRE

    Smiljanic, M.; van Keulen, Maurice; Jonker, Willem

    2004-01-01

    In this report, we analyze the problem of personal schema matching. We define the ingredients of the XML schema matching problem using constraint logic programming. This allows us to thourougly investigate specific matching problems. We do not have the ambition to provide for a formalism that covers all kinds of schema matching problems. The target is specifically personal schema matching using XML. The report is organized as follows. Chapter 2 provides a detailed description of our research ...

  6. XML schemas and mark-up practices of taxonomic literature.

    Science.gov (United States)

    Penev, Lyubomir; Lyal, Christopher Hc; Weitzman, Anna; Morse, David R; King, David; Sautter, Guido; Georgiev, Teodor; Morris, Robert A; Catapano, Terry; Agosti, Donat

    2011-01-01

    We review the three most widely used XML schemas used to mark-up taxonomic texts, TaxonX, TaxPub and taXMLit. These are described from the viewpoint of their development history, current status, implementation, and use cases. The concept of "taxon treatment" from the viewpoint of taxonomy mark-up into XML is discussed. TaxonX and taXMLit are primarily designed for legacy literature, the former being more lightweight and with a focus on recovery of taxon treatments, the latter providing a much more detailed set of tags to facilitate data extraction and analysis. TaxPub is an extension of the National Library of Medicine Document Type Definition (NLM DTD) for taxonomy focussed on layout and recovery and, as such, is best suited for mark-up of new publications and their archiving in PubMedCentral. All three schemas have their advantages and shortcomings and can be used for different purposes.

  7. XML-Based Visual Specification of Multidisciplinary Applications

    Science.gov (United States)

    Al-Theneyan, Ahmed; Jakatdar, Amol; Mehrotra, Piyush; Zubair, Mohammad

    2001-01-01

    The advancements in the Internet and Web technologies have fueled a growing interest in developing a web-based distributed computing environment. We have designed and developed Arcade, a web-based environment for designing, executing, monitoring, and controlling distributed heterogeneous applications, which is easy to use and access, portable, and provides support through all phases of the application development and execution. A major focus of the environment is the specification of heterogeneous, multidisciplinary applications. In this paper we focus on the visual and script-based specification interface of Arcade. The web/browser-based visual interface is designed to be intuitive to use and can also be used for visual monitoring during execution. The script specification is based on XML to: (1) make it portable across different frameworks, and (2) make the development of our tools easier by using the existing freely available XML parsers and editors. There is a one-to-one correspondence between the visual and script-based interfaces allowing users to go back and forth between the two. To support this we have developed translators that translate a script-based specification to a visual-based specification, and vice-versa. These translators are integrated with our tools and are transparent to users.

  8. Prototype Development: Context-Driven Dynamic XML Ophthalmologic Data Capture Application

    Science.gov (United States)

    Schwei, Kelsey M; Kadolph, Christopher; Finamore, Joseph; Cancel, Efrain; McCarty, Catherine A; Okorie, Asha; Thomas, Kate L; Allen Pacheco, Jennifer; Pathak, Jyotishman; Ellis, Stephen B; Denny, Joshua C; Rasmussen, Luke V; Tromp, Gerard; Williams, Marc S; Vrabec, Tamara R; Brilliant, Murray H

    2017-01-01

    Background The capture and integration of structured ophthalmologic data into electronic health records (EHRs) has historically been a challenge. However, the importance of this activity for patient care and research is critical. Objective The purpose of this study was to develop a prototype of a context-driven dynamic extensible markup language (XML) ophthalmologic data capture application for research and clinical care that could be easily integrated into an EHR system. Methods Stakeholders in the medical, research, and informatics fields were interviewed and surveyed to determine data and system requirements for ophthalmologic data capture. On the basis of these requirements, an ophthalmology data capture application was developed to collect and store discrete data elements with important graphical information. Results The context-driven data entry application supports several features, including ink-over drawing capability for documenting eye abnormalities, context-based Web controls that guide data entry based on preestablished dependencies, and an adaptable database or XML schema that stores Web form specifications and allows for immediate changes in form layout or content. The application utilizes Web services to enable data integration with a variety of EHRs for retrieval and storage of patient data. Conclusions This paper describes the development process used to create a context-driven dynamic XML data capture application for optometry and ophthalmology. The list of ophthalmologic data elements identified as important for care and research can be used as a baseline list for future ophthalmologic data collection activities. PMID:28903894

  9. The XML approach to implementing space link extension service management

    Science.gov (United States)

    Tai, W.; Welz, G. A.; Theis, G.; Yamada, T.

    2001-01-01

    A feasibility study has been conducted at JPL, ESOC, and ISAS to assess the possible applications of the eXtensible Mark-up Language (XML) capabilities to the implementation of the CCSDS Space Link Extension (SLE) Service Management function.

  10. Out of Control: Attentional Selection for Orientation Is Thwarted by Properties of the Underlying Neural Mechanisms

    Science.gov (United States)

    Du, Feng; Abrams, Richard A.

    2012-01-01

    To avoid sensory overload, people are able to selectively attend to a particular color or direction of motion while ignoring irrelevant stimuli that differ from the desired one. We show here for the first time that it is also possible to selectively attend to a specific line orientation--but with an important caveat: orientations that are…

  11. A Survey and Analysis of Access Control Architectures for XML Data

    National Research Council Canada - National Science Library

    Estlund, Mark J

    2006-01-01

    .... Business uses XML to leverage the full potential of the Internet for e-Commerce. The government wants to leverage the ability to share information across many platforms between divergent agencies...

  12. ReDaX (Relational to XML data publishing) un framework liviano para publicar información relacional

    OpenAIRE

    Ormeño, Emilio G.; Berón, Fabián R.

    2003-01-01

    Quizás uno de los mayores inconvenientes que posee XML, es que no ha sido pensado para almacenar información, en vez de ello, ha sido diseñado para permitir la publicación y el intercambio de información a través de la especificación XSL (eXtensible Stylesheet Languaje). Sin embargo, la mayor parte de la información de una empresa se encuentra en bases de datos relacionales. La publicación de información vía XML, es el proceso de transformar la información relacional en un documento XML para ...

  13. Automatically Generating a Distributed 3D Battlespace Using USMTF and XML-MTF Air Tasking Order, Extensible Markup Language (XML) and Virtual Reality Modeling Language (VRML)

    National Research Council Canada - National Science Library

    Murray, Mark

    2000-01-01

    .... To more effectively exchange and share data, the Defense Information Systems Agency (DISA), the lead agency for the USMTF, is actively engaged in extending the USMTF standard with a new data sharing technology called Extensible Markup Language (XML...

  14. New Kids on the Block: How To Recruit, Select, and Orient School Employees.

    Science.gov (United States)

    Anderson, Mark E.; And Others

    A conference presentation on the recruitment, selection, and orientation of school employees are highlighted in this paper. Part 1 describes organizing strategies for recruitment and selection, such as defining administrative roles, assessing current practices, and scheduling. Practices for attracting capable teacher candidates are presented in…

  15. Morphology and Orientation Selection of Non-metallic Inclusions in Electrified Molten Metal

    Science.gov (United States)

    Zhao, Z. C.; Qin, R. S.

    2017-10-01

    The effect of electric current on morphology and orientation selection of non-metallic inclusions in molten metal has been investigated using theoretical modeling and numerical calculation. Two geometric factors, namely the circularity ( fc ) and alignment ratio ( fe ) were introduced to describe the inclusions shape and configuration. Electric current free energy was calculated and the values were used to determine the thermodynamic preference between different microstructures. Electric current promotes the development of inclusion along the current direction by either expatiating directional growth or enhancing directional agglomeration. Reconfiguration of the inclusions to reduce the system electric resistance drives the phenomena. The morphology and orientation selection follow the routine to reduce electric free energy. The numerical results are in agreement with our experimental observations.

  16. Human Occipital and Parietal GABA Selectively Influence Visual Perception of Orientation and Size.

    Science.gov (United States)

    Song, Chen; Sandberg, Kristian; Andersen, Lau Møller; Blicher, Jakob Udby; Rees, Geraint

    2017-09-13

    GABA is the primary inhibitory neurotransmitter in human brain. The level of GABA varies substantially across individuals, and this variability is associated with interindividual differences in visual perception. However, it remains unclear whether the association between GABA level and visual perception reflects a general influence of visual inhibition or whether the GABA levels of different cortical regions selectively influence perception of different visual features. To address this, we studied how the GABA levels of parietal and occipital cortices related to interindividual differences in size, orientation, and brightness perception. We used visual contextual illusion as a perceptual assay since the illusion dissociates perceptual content from stimulus content and the magnitude of the illusion reflects the effect of visual inhibition. Across individuals, we observed selective correlations between the level of GABA and the magnitude of contextual illusion. Specifically, parietal GABA level correlated with size illusion magnitude but not with orientation or brightness illusion magnitude; in contrast, occipital GABA level correlated with orientation illusion magnitude but not with size or brightness illusion magnitude. Our findings reveal a region- and feature-dependent influence of GABA level on human visual perception. Parietal and occipital cortices contain, respectively, topographic maps of size and orientation preference in which neural responses to stimulus sizes and stimulus orientations are modulated by intraregional lateral connections. We propose that these lateral connections may underlie the selective influence of GABA on visual perception. SIGNIFICANCE STATEMENT GABA, the primary inhibitory neurotransmitter in human visual system, varies substantially across individuals. This interindividual variability in GABA level is linked to interindividual differences in many aspects of visual perception. However, the widespread influence of GABA raises the

  17. Human Occipital and Parietal GABA Selectively Influence Visual Perception of Orientation and Size

    Science.gov (United States)

    Andersen, Lau Møller; Blicher, Jakob Udby

    2017-01-01

    GABA is the primary inhibitory neurotransmitter in human brain. The level of GABA varies substantially across individuals, and this variability is associated with interindividual differences in visual perception. However, it remains unclear whether the association between GABA level and visual perception reflects a general influence of visual inhibition or whether the GABA levels of different cortical regions selectively influence perception of different visual features. To address this, we studied how the GABA levels of parietal and occipital cortices related to interindividual differences in size, orientation, and brightness perception. We used visual contextual illusion as a perceptual assay since the illusion dissociates perceptual content from stimulus content and the magnitude of the illusion reflects the effect of visual inhibition. Across individuals, we observed selective correlations between the level of GABA and the magnitude of contextual illusion. Specifically, parietal GABA level correlated with size illusion magnitude but not with orientation or brightness illusion magnitude; in contrast, occipital GABA level correlated with orientation illusion magnitude but not with size or brightness illusion magnitude. Our findings reveal a region- and feature-dependent influence of GABA level on human visual perception. Parietal and occipital cortices contain, respectively, topographic maps of size and orientation preference in which neural responses to stimulus sizes and stimulus orientations are modulated by intraregional lateral connections. We propose that these lateral connections may underlie the selective influence of GABA on visual perception. SIGNIFICANCE STATEMENT GABA, the primary inhibitory neurotransmitter in human visual system, varies substantially across individuals. This interindividual variability in GABA level is linked to interindividual differences in many aspects of visual perception. However, the widespread influence of GABA raises the

  18. Relationship between BOLD amplitude and pattern classification of orientation-selective activity in the human visual cortex

    Science.gov (United States)

    Tong, Frank; Harrison, Stephenie A.; Dewey, John A.; Kamitani, Yukiyasu

    2012-01-01

    Orientation-selective responses can be decoded from fMRI activity patterns in the human visual cortex, using multivariate pattern analysis (MVPA). To what extent do these feature-selective activity patterns depend on the strength and quality of the sensory input, and might the reliability of these activity patterns be predicted by the gross amplitude of the stimulus-driven BOLD response? Observers viewed oriented gratings that varied in luminance contrast (4, 20 or 100%) or spatial frequency (0.25, 1.0 or 4.0 cpd). As predicted, activity patterns in early visual areas led to better discrimination of orientations presented at high than low contrast, with greater effects of contrast found in area V1 than in V3. A second experiment revealed generally better decoding of orientations at low or moderate as compared to high spatial frequencies. Interestingly however, V1 exhibited a relative advantage at discriminating high spatial frequency orientations, consistent with the finer scale of representation in the primary visual cortex. In both experiments, the reliability of these orientation-selective activity patterns was well predicted by the average BOLD amplitude in each region of interest, as indicated by correlation analyses, as well as decoding applied to a simple model of voxel responses to simulated orientation columns. Moreover, individual differences in decoding accuracy could be predicted by the signal-to-noise ratio of an individual's BOLD response. Our results indicate that decoding accuracy can be well predicted by incorporating the amplitude of the BOLD response into simple simulation models of cortical selectivity; such models could prove useful in future applications of fMRI pattern classification. PMID:22917989

  19. The Synaptic and Morphological Basis of Orientation Selectivity in a Polyaxonal Amacrine Cell of the Rabbit Retina.

    Science.gov (United States)

    Murphy-Baum, Benjamin L; Taylor, W Rowland

    2015-09-30

    Much of the computational power of the retina derives from the activity of amacrine cells, a large and diverse group of GABAergic and glycinergic inhibitory interneurons. Here, we identify an ON-type orientation-selective, wide-field, polyaxonal amacrine cell (PAC) in the rabbit retina and demonstrate how its orientation selectivity arises from the structure of the dendritic arbor and the pattern of excitatory and inhibitory inputs. Excitation from ON bipolar cells and inhibition arising from the OFF pathway converge to generate a quasi-linear integration of visual signals in the receptive field center. This serves to suppress responses to high spatial frequencies, thereby improving sensitivity to larger objects and enhancing orientation selectivity. Inhibition also regulates the magnitude and time course of excitatory inputs to this PAC through serial inhibitory connections onto the presynaptic terminals of ON bipolar cells. This presynaptic inhibition is driven by graded potentials within local microcircuits, similar in extent to the size of single bipolar cell receptive fields. Additional presynaptic inhibition is generated by spiking amacrine cells on a larger spatial scale covering several hundred microns. The orientation selectivity of this PAC may be a substrate for the inhibition that mediates orientation selectivity in some types of ganglion cells. Significance statement: The retina comprises numerous excitatory and inhibitory circuits that encode specific features in the visual scene, such as orientation, contrast, or motion. Here, we identify a wide-field inhibitory neuron that responds to visual stimuli of a particular orientation, a feature selectivity that is primarily due to the elongated shape of the dendritic arbor. Integration of convergent excitatory and inhibitory inputs from the ON and OFF visual pathways suppress responses to small objects and fine textures, thus enhancing selectivity for larger objects. Feedback inhibition regulates the

  20. Web geoprocessing services on GML with a fast XML database

    African Journals Online (AJOL)

    user

    tasks on those data and return response messages and/or data outputs. To achieve an efficient ..... Even though GML data is based on XML data model and can be ..... language, and a stylesheet language CSS (Cascading Style Sheets). It is.

  1. Von der XML-Datenbasis zur nutzergerecht strukturierten Web-Site

    NARCIS (Netherlands)

    Freitag, D.; Wombacher, Andreas

    2002-01-01

    Due to the increasing use of information an the WWW by different sorts of device types, content providers have to solve the problem, how to present the fitting contents both effectively and taking into account the needs of the device type. The XML-language-family offers the possibility to present

  2. Improving the Virtual Learning Development Processes Using XML Standards.

    Science.gov (United States)

    Suss, Kurt; Oberhofer, Thomas

    2002-01-01

    Suggests that distributed learning environments and content often lack a common basis for the exchange of learning materials, which can hinder or even delay innovation and delivery of learning technology. Standards for platforms and authoring may provide a way to improve interoperability and cooperative development. Provides an XML-based approach…

  3. jmzReader: A Java parser library to process and visualize multiple text and XML-based mass spectrometry data formats.

    Science.gov (United States)

    Griss, Johannes; Reisinger, Florian; Hermjakob, Henning; Vizcaíno, Juan Antonio

    2012-03-01

    We here present the jmzReader library: a collection of Java application programming interfaces (APIs) to parse the most commonly used peak list and XML-based mass spectrometry (MS) data formats: DTA, MS2, MGF, PKL, mzXML, mzData, and mzML (based on the already existing API jmzML). The library is optimized to be used in conjunction with mzIdentML, the recently released standard data format for reporting protein and peptide identifications, developed by the HUPO proteomics standards initiative (PSI). mzIdentML files do not contain spectra data but contain references to different kinds of external MS data files. As a key functionality, all parsers implement a common interface that supports the various methods used by mzIdentML to reference external spectra. Thus, when developing software for mzIdentML, programmers no longer have to support multiple MS data file formats but only this one interface. The library (which includes a viewer) is open source and, together with detailed documentation, can be downloaded from http://code.google.com/p/jmzreader/. © 2012 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  4. Castles Made of Sand: Building Sustainable Digitized Collections Using XML.

    Science.gov (United States)

    Ragon, Bart

    2003-01-01

    Describes work at the University of Virginia library to digitize special collections. Discusses the use of XML (Extensible Markup Language); providing access to original source materials; DTD (Document Type Definition); TEI (Text Encoding Initiative); metadata; XSL (Extensible Style Language); and future possibilities. (LRW)

  5. XML schema for atomic and molecular data. Summary report of consultants' meeting

    International Nuclear Information System (INIS)

    Humbert, D.

    2008-04-01

    Advanced developments in computer technologies offer exciting opportunities for new distribution tools and applications in various fields of physics. The convenient and reliable exchange of data is clearly an important component of such applications. Therefore, in 2003, the A+M Data Unit initiated within the collaborative efforts of the DCN (Data Centre Network) a new standard for atomic, molecular and particle surface interaction data exchange (AM'PSI) based on XML (eXtensible Markup Language). A working group composed of staff from the IAEA, NIST, ORNL and Observatoire Paris-Meudon meets biannually to discuss progress made on the XML schema, and to foresee new developments and actions to be taken to promote this standard for AM/PSI data exchange. (author)

  6. Lean Information Management: Criteria For Selecting Key Performance Indicators At Shop Floor

    Science.gov (United States)

    Iuga, Maria Virginia; Kifor, Claudiu Vasile; Rosca, Liviu-Ion

    2015-07-01

    Most successful organizations worldwide use key performance indicators as an important part of their corporate strategy in order to forecast, measure and plan their businesses. Performance metrics vary in their purpose, definition and content. Therefore, the way organizations select what they think are the optimal indicators for their businesses varies from company to company, sometimes even from department to department. This study aims to answer the question of what is the most suitable way to define and select key performance indicators. More than that, it identifies the right criteria to select key performance indicators at shop floor level. This paper contributes to prior research by analysing and comparing previously researched selection criteria and proposes an original six-criteria-model, which caters towards choosing the most adequate KPIs. Furthermore, the authors take the research a step further by further steps to closed research gaps within this field of study.

  7. Integrating personalized medical test contents with XML and XSL-FO.

    Science.gov (United States)

    Toddenroth, Dennis; Dugas, Martin; Frankewitsch, Thomas

    2011-03-01

    In 2004 the adoption of a modular curriculum at the medical faculty in Muenster led to the introduction of centralized examinations based on multiple-choice questions (MCQs). We report on how organizational challenges of realizing faculty-wide personalized tests were addressed by implementation of a specialized software module to automatically generate test sheets from individual test registrations and MCQ contents. Key steps of the presented method for preparing personalized test sheets are (1) the compilation of relevant item contents and graphical media from a relational database with database queries, (2) the creation of Extensible Markup Language (XML) intermediates, and (3) the transformation into paginated documents. The software module by use of an open source print formatter consistently produced high-quality test sheets, while the blending of vectorized textual contents and pixel graphics resulted in efficient output file sizes. Concomitantly the module permitted an individual randomization of item sequences to prevent illicit collusion. The automatic generation of personalized MCQ test sheets is feasible using freely available open source software libraries, and can be efficiently deployed on a faculty-wide scale.

  8. Automatically Generating a Distributed 3D Virtual Battlespace Using USMTF and XML-MTF Air Tasking Orders, Extensible Markup Language (XML) and Virtual Reality Modeling Language (VRML)

    National Research Council Canada - National Science Library

    Murray, Mark

    2000-01-01

    .... To more effectively exchange and share data, the Defense Information Systems Agency (DISA), the lead agency for the USMTF, is actively engaged in extending the USMTF standard with a new data sharing technology called Extensible Markup Language (XML...

  9. An enhanced security solution for electronic medical records based on AES hybrid technique with SOAP/XML and SHA-1.

    Science.gov (United States)

    Kiah, M L Mat; Nabi, Mohamed S; Zaidan, B B; Zaidan, A A

    2013-10-01

    This study aims to provide security solutions for implementing electronic medical records (EMRs). E-Health organizations could utilize the proposed method and implement recommended solutions in medical/health systems. Majority of the required security features of EMRs were noted. The methods used were tested against each of these security features. In implementing the system, the combination that satisfied all of the security features of EMRs was selected. Secure implementation and management of EMRs facilitate the safeguarding of the confidentiality, integrity, and availability of e-health organization systems. Health practitioners, patients, and visitors can use the information system facilities safely and with confidence anytime and anywhere. After critically reviewing security and data transmission methods, a new hybrid method was proposed to be implemented on EMR systems. This method will enhance the robustness, security, and integration of EMR systems. The hybrid of simple object access protocol/extensible markup language (XML) with advanced encryption standard and secure hash algorithm version 1 has achieved the security requirements of an EMR system with the capability of integrating with other systems through the design of XML messages.

  10. Personalising e-learning modules: targeting Rasmussen levels using XML.

    Science.gov (United States)

    Renard, J M; Leroy, S; Camus, H; Picavet, M; Beuscart, R

    2003-01-01

    The development of Internet technologies has made it possible to increase the number and the diversity of on-line resources for teachers and students. Initiatives like the French-speaking Virtual Medical University Project (UMVF) try to organise the access to these resources. But both teachers and students are working on a partly redundant subset of knowledge. From the analysis of some French courses we propose a model for knowledge organisation derived from Rasmussen's stepladder. In the context of decision-making Rasmussen has identified skill-based, rule-based and knowledge-based levels for the mental process. In the medical context of problem-solving, we apply these three levels to the definition of three students levels: beginners, intermediate-level learners, experts. Based on our model, we build a representation of the hierarchical structure of data using XML language. We use XSLT Transformation Language in order to filter relevant data according to student level and to propose an appropriate display on students' terminal. The model and the XML implementation we define help to design tools for building personalised e-learning modules.

  11. An XML description of detector geometries for GEANT4

    International Nuclear Information System (INIS)

    Figgins, J.; Walker, B.; Comfort, J.R.

    2006-01-01

    A code has been developed that enables the geometry of detectors to be specified easily and flexibly in the XML language, for use in the Monte Carlo program GEANT4. The user can provide clear documentation of the geometry without being proficient in the C++ language of GEANT4. The features and some applications are discussed

  12. Fuzzy Approaches to Flexible Querying in XML Retrieval

    Directory of Open Access Journals (Sweden)

    Stefania Marrara

    2016-04-01

    Full Text Available In this paper we review some approaches to flexible querying in XML that apply several techniques among which Fuzzy Set Theory. In particular we focus on FleXy, a flexible extension of XQuery-FT that was developed as a library on the open source engine Base-X. We then present PatentLight, a tool for patent retrieval that was developed to show the expressive power of Flexy.

  13. The version control service for ATLAS data acquisition configuration filesDAQ ; configuration ; OKS ; XML

    CERN Document Server

    Soloviev, Igor; The ATLAS collaboration

    2012-01-01

    To configure data taking session the ATLAS systems and detectors store more than 160 MBytes of data acquisition related configuration information in OKS XML files. The total number of the files exceeds 1300 and they are updated by many system experts. In the past from time to time after such updates we had experienced problems caused by XML syntax errors or inconsistent state of files from a point of view of the overall ATLAS configuration. It was not always possible to know who made a modification causing problems or how to go back to a previous version of the modified file. Few years ago a special service addressing these issues has been implemented and deployed on ATLAS Point-1. It excludes direct write access to XML files stored in a central database repository. Instead, for an update the files are copied into a user repository, validated after modifications and committed using a version control system. The system's callback updates the central repository. Also, it keeps track of all modifications providi...

  14. A Short Story about XML Schemas, Digital Preservation and Format Libraries

    Directory of Open Access Journals (Sweden)

    Steve Knight

    2012-03-01

    Full Text Available One morning we came in to work to find that one of our servers had made 1.5 million attempts to contact an external server in the preceding hour. It turned out that the calls were being generated by the Library’s digital preservation system (Rosetta while attempting to validate XML Schema Definition (XSD declarations included in the XML files of the Library’s online newspaper application Papers Past, which we were in the process of loading into Rosetta. This paper describes our response to this situation and outlines some of the issues that needed to be canvassed before we were able to arrive at a suitable solution, including the digital preservation status of these XSDs; their impact on validation tools, such as JHOVE; and where these objects should reside if they are considered material to the digital preservation process.

  15. COCOA CMS Object-oriented Code for Optical Alignment

    CERN Document Server

    Arce, P

    2007-01-01

    COCOA is a C++ software that is able to reconstruct the positions, angular orientations, and internal optical parameters of any optical system described by a seamless combination of many different types of optical objects. The program also handles the propagation of uncertainties, which makes it very useful to simulate the system in the design phase. The software is currently in use by the different optical alignment systems of CMS and is integrated in the CMS framework so that it can read the geometry description from simple text files or the CMS XML format, and the input and output data from text files, ROOT trees, or an Oracle or MySQL database.

  16. CREATING OPEN DIGITAL LIBRARY USING XML: IMPLEMENTATION OF OAI-PMH

    OpenAIRE

    M. Vesely; T. Baron; J.Y. Le Meur; T. Simko

    2002-01-01

    This article describes the implementation of the OAi-PMH protocol within the CERN Document Server (CDS). In terms of the protocol, CERN acts both as a data provider and service provider and the two core applications are described. The application of XML Schema and XSLT technology is emphasized.

  17. An XML-Based Networking Method for Connecting Distributed Anthropometric Databases

    Directory of Open Access Journals (Sweden)

    H Cheng

    2007-03-01

    Full Text Available Anthropometric data are used by numerous types of organizations for health evaluation, ergonomics, apparel sizing, fitness training, and many other applications. Data have been collected and stored in electronic databases since at least the 1940s. These databases are owned by many organizations around the world. In addition, the anthropometric studies stored in these databases often employ different standards, terminology, procedures, or measurement sets. To promote the use and sharing of these databases, the World Engineering Anthropometry Resources (WEAR group was formed and tasked with the integration and publishing of member resources. It is easy to see that organizing worldwide anthropometric data into a single database architecture could be a daunting and expensive undertaking. The challenges of WEAR integration reflect mainly in the areas of distributed and disparate data, different standards and formats, independent memberships, and limited development resources. Fortunately, XML schema and web services provide an alternative method for networking databases, referred to as the Loosely Coupled WEAR Integration. A standard XML schema can be defined and used as a type of Rosetta stone to translate the anthropometric data into a universal format, and a web services system can be set up to link the databases to one another. In this way, the originators of the data can keep their data locally along with their own data management system and user interface, but their data can be searched and accessed as part of the larger data network, and even combined with the data of others. This paper will identify requirements for WEAR integration, review XML as the universal format, review different integration approaches, and propose a hybrid web services/data mart solution.

  18. An effective XML based name mapping mechanism within StoRM

    International Nuclear Information System (INIS)

    Corso, E; Forti, A; Ghiselli, A; Magnoni, L; Zappi, R

    2008-01-01

    In a Grid environment the naming capability allows users to refer to specific data resources in a physical storage system using a high level logical identifier. This logical identifier is typically organized in a file system like structure, a hierarchical tree of names. Storage Resource Manager (SRM) services map the logical identifier to the physical location of data evaluating a set of parameters as the desired quality of services and the VOMS attributes specified in the requests. StoRM is a SRM service developed by INFN and ICTP-EGRID to manage file and space on standard POSIX and high performing parallel and cluster file systems. An upcoming requirement in the Grid data scenario is the orthogonality of the logical name and the physical location of data, in order to refer, with the same identifier, to different copies of data archived in various storage areas with different quality of service. The mapping mechanism proposed in StoRM is based on a XML document that represents the different storage components managed by the service, the storage areas defined by the site administrator, the quality of service they provide and the Virtual Organization that want to use the storage area. An appropriate directory tree is realized in each storage component reflecting the XML schema. In this scenario StoRM is able to identify the physical location of a requested data evaluating the logical identifier and the specified attributes following the XML schema, without querying any database service. This paper presents the namespace schema defined, the different entities represented and the technical details of the StoRM implementation

  19. Evaluation of efficient XML interchange (EXI) for large datasets and as an alternative to binary JSON encodings

    OpenAIRE

    Hill, Bruce W.

    2015-01-01

    Approved for public release; distribution is unlimited Current and emerging Navy information concepts, including network-centric warfare and Navy Tactical Cloud, presume high network throughput and interoperability. The Extensible Markup Language (XML) addresses the latter requirement, but its verbosity is problematic for afloat networks. JavaScript Object Notation (JSON) is an alternative to XML common in web applications and some non-relational databases. Compact, binary encodings exist ...

  20. Towards privacy-preserving XML transformation

    DEFF Research Database (Denmark)

    Jensen, Meiko; Kerschbaum, Florian

    2011-01-01

    In composite web services one can only either hide the identities of the participants or provide end-to-end confidentiality via encryption. For a designer of inter organizational business processes this implies that she either needs to reveal her suppliers or force her customers to reveal...... their information. In this paper we present a solution to the encrypted data modification problem and reconciliate this apparent conflict. Using a generic sender-transformer-recipient example scenario, we illustrate the steps required for applying XML transformations to encrypted data, present the cryptographic...... building blocks, and give an outlook on advantages and weaknesses of the proposed encryption scheme. The transformer is then able to offer composite services without itself learning the content of the messages....

  1. IMPROVING THE VIRTUAL LEARNING DEVELOPMENT PROCESSES USING XML STANDARDS

    Directory of Open Access Journals (Sweden)

    Kurt Suss

    2002-06-01

    Full Text Available Distributed Icarning environments and content often lack a common basis for the cxchange of learning materials. This delays, or even hinders, both innovation and delivery of learning tecnology. Standards for platforms and authoring may provide a way to improve interoperability and cooperative development. This article provides an XML-based approach to this problem creaied by the IMS Global Learning Consortium.

  2. XTCE and XML Database Evolution and Lessons from JWST, LandSat, and Constellation

    Science.gov (United States)

    Gal-Edd, Jonathan; Kreistle, Steven; Fatig. Cirtos; Jones, Ronald

    2008-01-01

    The database organizations within three different NASA projects have advanced current practices by creating database synergy between the various spacecraft life cycle stakeholders and educating users in the benefits of the Consultative Committee for Space Data Systems (CCSDS) XML Telemetry and Command Exchange (XTCE) format. The combination of XML for managing program data and CCSDS XTCE for exchange is a robust approach that will meet all user requirements using Standards and Non proprietary tools. COTS tools for XTCEKML are very wide and varied. To combine together various low cost and free tools can be more expensive in the long run than choosing a more expensive COTS tool that meets all the needs. This was especially important when deploying in 32 remote sites with no need for licenses. A common mission XTCEKML format between dissimilar systems is possible and is not difficult. Command XMLKTCE is more complex than telemetry and the use of XTCEKML metadata to describe pages and scripts is needed due to the proprietary nature of most current ground systems. Other mission and science products such as spacecraft loads, science image catalogs, and mission operation procedures can all be described with XML as well to increase there flexibility as systems evolve and change. Figure 10 is an example of a spacecraft table load. The word is out and the XTCE community is growing, The f sXt TCE user group was held in October and in addition to ESAESOC, SC02000, and CNES identified several systems based on XTCE. The second XTCE user group is scheduled for March 10, 2008 with LDMC and others joining. As the experience with XTCE grows and the user community receives the promised benefits of using XTCE and XML the interest is growing fast.

  3. Synaptic Basis for Differential Orientation Selectivity between Complex and Simple Cells in Mouse Visual Cortex.

    Science.gov (United States)

    Li, Ya-tang; Liu, Bao-hua; Chou, Xiao-lin; Zhang, Li I; Tao, Huizhong W

    2015-08-05

    In the primary visual cortex (V1), orientation-selective neurons can be categorized into simple and complex cells primarily based on their receptive field (RF) structures. In mouse V1, although previous studies have examined the excitatory/inhibitory interplay underlying orientation selectivity (OS) of simple cells, the synaptic bases for that of complex cells have remained obscure. Here, by combining in vivo loose-patch and whole-cell recordings, we found that complex cells, identified by their overlapping on/off subfields, had significantly weaker OS than simple cells at both spiking and subthreshold membrane potential response levels. Voltage-clamp recordings further revealed that although excitatory inputs to complex and simple cells exhibited a similar degree of OS, inhibition in complex cells was more narrowly tuned than excitation, whereas in simple cells inhibition was more broadly tuned than excitation. The differential inhibitory tuning can primarily account for the difference in OS between complex and simple cells. Interestingly, the differential synaptic tuning correlated well with the spatial organization of synaptic input: the inhibitory visual RF in complex cells was more elongated in shape than its excitatory counterpart and also was more elongated than that in simple cells. Together, our results demonstrate that OS of complex and simple cells is differentially shaped by cortical inhibition based on its orientation tuning profile relative to excitation, which is contributed at least partially by the spatial organization of RFs of presynaptic inhibitory neurons. Simple and complex cells, two classes of principal neurons in the primary visual cortex (V1), are generally thought to be equally selective for orientation. In mouse V1, we report that complex cells, identified by their overlapping on/off subfields, has significantly weaker orientation selectivity (OS) than simple cells. This can be primarily attributed to the differential tuning selectivity

  4. Rosetta Ligand docking with flexible XML protocols.

    Science.gov (United States)

    Lemmon, Gordon; Meiler, Jens

    2012-01-01

    RosettaLigand is premiere software for predicting how a protein and a small molecule interact. Benchmark studies demonstrate that 70% of the top scoring RosettaLigand predicted interfaces are within 2Å RMSD from the crystal structure [1]. The latest release of Rosetta ligand software includes many new features, such as (1) docking of multiple ligands simultaneously, (2) representing ligands as fragments for greater flexibility, (3) redesign of the interface during docking, and (4) an XML script based interface that gives the user full control of the ligand docking protocol.

  5. Using XML Configuration-Driven Development to Create a Customizable Ground Data System

    Science.gov (United States)

    Nash, Brent; DeMore, Martha

    2009-01-01

    The Mission data Processing and Control Subsystem (MPCS) is being developed as a multi-mission Ground Data System with the Mars Science Laboratory (MSL) as the first fully supported mission. MPCS is a fully featured, Java-based Ground Data System (GDS) for telecommand and telemetry processing based on Configuration-Driven Development (CDD). The eXtensible Markup Language (XML) is the ideal language for CDD because it is easily readable and editable by all levels of users and is also backed by a World Wide Web Consortium (W3C) standard and numerous powerful processing tools that make it uniquely flexible. The CDD approach adopted by MPCS minimizes changes to compiled code by using XML to create a series of configuration files that provide both coarse and fine grained control over all aspects of GDS operation.

  6. An XML-based interchange format for genotype-phenotype data.

    Science.gov (United States)

    Whirl-Carrillo, M; Woon, M; Thorn, C F; Klein, T E; Altman, R B

    2008-02-01

    Recent advances in high-throughput genotyping and phenotyping have accelerated the creation of pharmacogenomic data. Consequently, the community requires standard formats to exchange large amounts of diverse information. To facilitate the transfer of pharmacogenomics data between databases and analysis packages, we have created a standard XML (eXtensible Markup Language) schema that describes both genotype and phenotype data as well as associated metadata. The schema accommodates information regarding genes, drugs, diseases, experimental methods, genomic/RNA/protein sequences, subjects, subject groups, and literature. The Pharmacogenetics and Pharmacogenomics Knowledge Base (PharmGKB; www.pharmgkb.org) has used this XML schema for more than 5 years to accept and process submissions containing more than 1,814,139 SNPs on 20,797 subjects using 8,975 assays. Although developed in the context of pharmacogenomics, the schema is of general utility for exchange of genotype and phenotype data. We have written syntactic and semantic validators to check documents using this format. The schema and code for validation is available to the community at http://www.pharmgkb.org/schema/index.html (last accessed: 8 October 2007). (c) 2007 Wiley-Liss, Inc.

  7. Integration of HTML documents into an XML-based knowledge repository.

    Science.gov (United States)

    Roemer, Lorrie K; Rocha, Roberto A; Del Fiol, Guilherme

    2005-01-01

    The Emergency Patient Instruction Generator (EPIG) is an electronic content compiler / viewer / editor developed by Intermountain Health Care. The content is vendor-licensed HTML patient discharge instructions. This work describes the process by which discharge instructions where converted from ASCII-encoded HTML to XML, then loaded to a database for use by EPIG.

  8. A Conversion Tool for Mathematical Expressions in Web XML Files.

    Science.gov (United States)

    Ohtake, Nobuyuki; Kanahori, Toshihiro

    2003-01-01

    This article discusses the conversion of mathematical equations into Extensible Markup Language (XML) on the World Wide Web for individuals with visual impairments. A program is described that converts the presentation markup style to the content markup style in MathML to allow browsers to render mathematical expressions without other programs.…

  9. Automating data acquisition into ontologies from pharmacogenetics relational data sources using declarative object definitions and XML.

    Science.gov (United States)

    Rubin, Daniel L; Hewett, Micheal; Oliver, Diane E; Klein, Teri E; Altman, Russ B

    2002-01-01

    Ontologies are useful for organizing large numbers of concepts having complex relationships, such as the breadth of genetic and clinical knowledge in pharmacogenomics. But because ontologies change and knowledge evolves, it is time consuming to maintain stable mappings to external data sources that are in relational format. We propose a method for interfacing ontology models with data acquisition from external relational data sources. This method uses a declarative interface between the ontology and the data source, and this interface is modeled in the ontology and implemented using XML schema. Data is imported from the relational source into the ontology using XML, and data integrity is checked by validating the XML submission with an XML schema. We have implemented this approach in PharmGKB (http://www.pharmgkb.org/), a pharmacogenetics knowledge base. Our goals were to (1) import genetic sequence data, collected in relational format, into the pharmacogenetics ontology, and (2) automate the process of updating the links between the ontology and data acquisition when the ontology changes. We tested our approach by linking PharmGKB with data acquisition from a relational model of genetic sequence information. The ontology subsequently evolved, and we were able to rapidly update our interface with the external data and continue acquiring the data. Similar approaches may be helpful for integrating other heterogeneous information sources in order make the diversity of pharmacogenetics data amenable to computational analysis.

  10. Model tool to describe chemical structures in XML format utilizing structural fragments and chemical ontology.

    Science.gov (United States)

    Sankar, Punnaivanam; Alain, Krief; Aghila, Gnanasekaran

    2010-05-24

    We have developed a model structure-editing tool, ChemEd, programmed in JAVA, which allows drawing chemical structures on a graphical user interface (GUI) by selecting appropriate structural fragments defined in a fragment library. The terms representing the structural fragments are organized in fragment ontology to provide a conceptual support. ChemEd describes the chemical structure in an XML document (ChemFul) with rich semantics explicitly encoding the details of the chemical bonding, the hybridization status, and the electron environment around each atom. The document can be further processed through suitable algorithms and with the support of external chemical ontologies to generate understandable reports about the functional groups present in the structure and their specific environment.

  11. Prototype Development: Context-Driven Dynamic XML Ophthalmologic Data Capture Application.

    Science.gov (United States)

    Peissig, Peggy; Schwei, Kelsey M; Kadolph, Christopher; Finamore, Joseph; Cancel, Efrain; McCarty, Catherine A; Okorie, Asha; Thomas, Kate L; Allen Pacheco, Jennifer; Pathak, Jyotishman; Ellis, Stephen B; Denny, Joshua C; Rasmussen, Luke V; Tromp, Gerard; Williams, Marc S; Vrabec, Tamara R; Brilliant, Murray H

    2017-09-13

    The capture and integration of structured ophthalmologic data into electronic health records (EHRs) has historically been a challenge. However, the importance of this activity for patient care and research is critical. The purpose of this study was to develop a prototype of a context-driven dynamic extensible markup language (XML) ophthalmologic data capture application for research and clinical care that could be easily integrated into an EHR system. Stakeholders in the medical, research, and informatics fields were interviewed and surveyed to determine data and system requirements for ophthalmologic data capture. On the basis of these requirements, an ophthalmology data capture application was developed to collect and store discrete data elements with important graphical information. The context-driven data entry application supports several features, including ink-over drawing capability for documenting eye abnormalities, context-based Web controls that guide data entry based on preestablished dependencies, and an adaptable database or XML schema that stores Web form specifications and allows for immediate changes in form layout or content. The application utilizes Web services to enable data integration with a variety of EHRs for retrieval and storage of patient data. This paper describes the development process used to create a context-driven dynamic XML data capture application for optometry and ophthalmology. The list of ophthalmologic data elements identified as important for care and research can be used as a baseline list for future ophthalmologic data collection activities. ©Peggy Peissig, Kelsey M Schwei, Christopher Kadolph, Joseph Finamore, Efrain Cancel, Catherine A McCarty, Asha Okorie, Kate L Thomas, Jennifer Allen Pacheco, Jyotishman Pathak, Stephen B Ellis, Joshua C Denny, Luke V Rasmussen, Gerard Tromp, Marc S Williams, Tamara R Vrabec, Murray H Brilliant. Originally published in JMIR Medical Informatics (http://medinform.jmir.org), 13.09.2017.

  12. On the orientation of stripes in fish skin patterning.

    Science.gov (United States)

    Míguez, David G; Muñuzuri, Alberto P

    2006-11-20

    This paper is focused on the study of the stripes orientation in the fish skin patterns. Based on microscopic observations of the pigment cells behavior at the embryonic stage, the key aspects of the pigmentation process are implemented in an experimental reaction-diffusion system. The experiment consists of a photosensitive Turing pattern of stripes growing directionally in one direction with controlled velocity. Different growth velocities of the system rearrange the stripes in the same three possible orientations observed in the skin of the colored fishes: parallel, oblique, and perpendicular. Our results suggest that the spreading velocity of the pigment cells in the fish dermis selects the orientation in the patterning processes.

  13. Modeling views in the layered view model for XML using UML

    NARCIS (Netherlands)

    Rajugan, R.; Dillon, T.S.; Chang, E.; Feng, L.

    In data engineering, view formalisms are used to provide flexibility to users and user applications by allowing them to extract and elaborate data from the stored data sources. Conversely, since the introduction of Extensible Markup Language (XML), it is fast emerging as the dominant standard for

  14. On the selection of shape and orientation of a greenhouse. Thermal modeling and experimental validation

    Energy Technology Data Exchange (ETDEWEB)

    Sethi, V.P. [Department of Mechanical Engineering, Punjab Agricultural University, Ludhiana 141 004, Punjab (India)

    2009-01-15

    In this study, five most commonly used single span shapes of greenhouses viz. even-span, uneven-span, vinery, modified arch and quonset type have been selected for comparison. The length, width and height (at the center) are kept same for all the selected shapes. A mathematical model for computing transmitted total solar radiation (beam, diffused and ground reflected) at each hour, for each month and at any latitude for the selected geometry greenhouses (through each wall, inclined surfaces and roofs) is developed for both east-west and north-south orientation. Computed transmitted solar radiation is then introduced in a transient thermal model developed to compute hourly inside air temperature for each shape and orientation. Experimental validation of both the models is carried out for the measured total solar radiation and inside air temperature for an east-west orientation, even-span greenhouse (for a typical day in summer) at Ludhiana (31 N and 77 E) Punjab, India. During the experimentation, capsicum crop is grown inside the greenhouse. The predicted and measured values are in close agreement. Results show that uneven-span shape greenhouse receives the maximum and quonset shape receives the minimum solar radiation during each month of the year at all latitudes. East-west orientation is the best suited for year round greenhouse applications at all latitudes as this orientation receives greater total radiation in winter and less in summer except near the equator. Results also show that inside air temperature rise depends upon the shape of the greenhouse and this variation from uneven-span shape to quonset shape is 4.6 C (maximum) and 3.5 C (daily average) at 31 N latitude. (author)

  15. A Self-adaptive Scope Allocation Scheme for Labeling Dynamic XML Documents

    NARCIS (Netherlands)

    Shen, Y.; Feng, L.; Shen, T.; Wang, B.

    This paper proposes a self-adaptive scope allocation scheme for labeling dynamic XML documents. It is general, light-weight and can be built upon existing data retrieval mechanisms. Bayesian inference is used to compute the actual scope allocated for labeling a certain node based on both the prior

  16. XPIWIT--an XML pipeline wrapper for the Insight Toolkit.

    Science.gov (United States)

    Bartschat, Andreas; Hübner, Eduard; Reischl, Markus; Mikut, Ralf; Stegmaier, Johannes

    2016-01-15

    The Insight Toolkit offers plenty of features for multidimensional image analysis. Current implementations, however, often suffer either from a lack of flexibility due to hard-coded C++ pipelines for a certain task or by slow execution times, e.g. caused by inefficient implementations or multiple read/write operations for separate filter execution. We present an XML-based wrapper application for the Insight Toolkit that combines the performance of a pure C++ implementation with an easy-to-use graphical setup of dynamic image analysis pipelines. Created XML pipelines can be interpreted and executed by XPIWIT in console mode either locally or on large clusters. We successfully applied the software tool for the automated analysis of terabyte-scale, time-resolved 3D image data of zebrafish embryos. XPIWIT is implemented in C++ using the Insight Toolkit and the Qt SDK. It has been successfully compiled and tested under Windows and Unix-based systems. Software and documentation are distributed under Apache 2.0 license and are publicly available for download at https://bitbucket.org/jstegmaier/xpiwit/downloads/. johannes.stegmaier@kit.edu Supplementary data are available at Bioinformatics online. © The Author 2015. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

  17. Research on Heterogeneous Data Exchange based on XML

    Science.gov (United States)

    Li, Huanqin; Liu, Jinfeng

    Integration of multiple data sources is becoming increasingly important for enterprises that cooperate closely with their partners for e-commerce. OLAP enables analysts and decision makers fast access to various materialized views from data warehouses. However, many corporations have internal business applications deployed on different platforms. This paper introduces a model for heterogeneous data exchange based on XML. The system can exchange and share the data among the different sources. The method used to realize the heterogeneous data exchange is given in this paper.

  18. An XML-based configuration system for MAST PCS

    International Nuclear Information System (INIS)

    Storrs, J.; McArdle, G.

    2008-01-01

    MAST PCS, a port of General Atomics' generic Plasma Control System, is a large software system comprising many source files in C and IDL. Application parameters can affect multiple source files in complex ways, making code development and maintenance difficult. The MAST PCS configuration system aims to make the task of the application developer easier, through the use of XML-based configuration files and a configuration tool which processes them. It is presented here as an example of a useful technique with wide application

  19. Summary report of consultants' meeting on XML schema for atomic and molecular data

    International Nuclear Information System (INIS)

    Humbert, D.

    2007-07-01

    Advanced developments in computer technologies offer exciting opportunities for new distributed tools and applications in various fields of physics. The convenient and reliable exchange of data is clearly an important component of such applications. Therefore, in 2003, the AMD Unit initiated within the collaborative efforts of the DCN (Data Centre Network) a new standard for atomic, molecular and particle surface interaction data exchange (AM/PSI) based on XML (eXtensible Markup Language). A working group composed of staff from the IAEA, NIST, ORNL and Observatoire Paris-Meudon, meets biannually to discuss progress made on the XML schema and to foresee new developments and actions to be taken to promote this standard for AM/PSI data exchange. This meeting is the first such gathering of these specialists in 2007. (author)

  20. A new service-oriented grid-based method for AIoT application and implementation

    Science.gov (United States)

    Zou, Yiqin; Quan, Li

    2017-07-01

    The traditional three-layer Internet of things (IoT) model, which includes physical perception layer, information transferring layer and service application layer, cannot express complexity and diversity in agricultural engineering area completely. It is hard to categorize, organize and manage the agricultural things with these three layers. Based on the above requirements, we propose a new service-oriented grid-based method to set up and build the agricultural IoT. Considering the heterogeneous, limitation, transparency and leveling attributes of agricultural things, we propose an abstract model for all agricultural resources. This model is service-oriented and expressed with Open Grid Services Architecture (OGSA). Information and data of agricultural things were described and encapsulated by using XML in this model. Every agricultural engineering application will provide service by enabling one application node in this service-oriented grid. Description of Web Service Resource Framework (WSRF)-based Agricultural Internet of Things (AIoT) and the encapsulation method were also discussed in this paper for resource management in this model.

  1. XML-based assembly visualization for a multi-CAD digital mock-up system

    International Nuclear Information System (INIS)

    Song, In Ho; Chung, Sung Chong

    2007-01-01

    Using a virtual assembly tool, engineers are able to design accurate and interference free parts without making physical mock-ups. Instead of a single CAD source, several CAD systems are used to design a complex product in a distributed design environment. In this paper, a multi-CAD assembly method is proposed through an XML and the lightweight CAD file. XML data contains a hierarchy of the multi-CAD assembly. The lightweight CAD file produced from various CAD files through the ACIS kemel and InterOp includes not only mesh and B-Rep data, but also topological data. It is used to visualize CAD data and to verify dimensions of the parts. The developed system is executed on desktop computers. It does not require commercial CAD systems to visualize 3D assembly data. Multi-CAD models have been assembled to verify the effectiveness of the developed DMU system on the Internet

  2. Visual training paired with electrical stimulation of the basal forebrain improves orientation-selective visual acuity in the rat.

    Science.gov (United States)

    Kang, Jun Il; Groleau, Marianne; Dotigny, Florence; Giguère, Hugo; Vaucher, Elvire

    2014-07-01

    The cholinergic afferents from the basal forebrain to the primary visual cortex play a key role in visual attention and cortical plasticity. These afferent fibers modulate acute and long-term responses of visual neurons to specific stimuli. The present study evaluates whether this cholinergic modulation of visual neurons results in cortical activity and visual perception changes. Awake adult rats were exposed repeatedly for 2 weeks to an orientation-specific grating with or without coupling this visual stimulation to an electrical stimulation of the basal forebrain. The visual acuity, as measured using a visual water maze before and after the exposure to the orientation-specific grating, was increased in the group of trained rats with simultaneous basal forebrain/visual stimulation. The increase in visual acuity was not observed when visual training or basal forebrain stimulation was performed separately or when cholinergic fibers were selectively lesioned prior to the visual stimulation. The visual evoked potentials show a long-lasting increase in cortical reactivity of the primary visual cortex after coupled visual/cholinergic stimulation, as well as c-Fos immunoreactivity of both pyramidal and GABAergic interneuron. These findings demonstrate that when coupled with visual training, the cholinergic system improves visual performance for the trained orientation probably through enhancement of attentional processes and cortical plasticity in V1 related to the ratio of excitatory/inhibitory inputs. This study opens the possibility of establishing efficient rehabilitation strategies for facilitating visual capacity.

  3. Self-oriented nanoparticles for site-selective immunoglobulin G recognition via epitope imprinting approach.

    Science.gov (United States)

    Çorman, Mehmet Emin; Armutcu, Canan; Uzun, Lokman; Say, Rıdvan; Denizli, Adil

    2014-11-01

    Molecular imprinting is a polymerization technique that provides synthetic analogs for template molecules. Molecularly imprinted polymers (MIPs) have gained much attention due to their unique properties such as selectivity and specificity for target molecules. In this study, we focused on the development of polymeric materials with molecular recognition ability, so molecular imprinting was combined with miniemulsion polymerization to synthesize self-orienting nanoparticles through the use of an epitope imprinting approach. Thus, L-lysine imprinted nanoparticles (LMIP) were synthesized via miniemulsion polymerization technique. Immunoglobulin G (IgG) was then bound to the cavities that specifically formed for L-lysine molecules that are typically found at the C-terminus of the Fc region of antibody molecules. The resulting nanoparticles makes it possible to minimize the nonspecific interaction between monomer and template molecules. In addition, the orientation of the entire IgG molecule was controlled, and random imprinting of the IgG was prevented. The optimum conditions were determined for IgG recognition using the imprinted nanoparticles. The selectivity of the nanoparticles against IgG molecules was also evaluated using albumin and hemoglobin as competitor molecules. In order to show the self-orientation capability of imprinted nanoparticles, human serum albumin (HSA) adsorption onto both the plain nanoparticles and immobilized nanoparticles by anti-human serum albumin antibody (anti-HSA antibody) was also carried out. Due to anti-HSA antibody immobilization on the imprinted nanoparticles, the adsorption capability of nanoparticles against HSA molecules vigorously enhanced. It is proved that the oriented immobilization of antibodies was appropriately succeeded. Copyright © 2014 Elsevier B.V. All rights reserved.

  4. A comparison of an algorithm for automated sequential beam orientation selection (Cycle) with simulated annealing

    International Nuclear Information System (INIS)

    Woudstra, Evert; Heijmen, Ben J M; Storchi, Pascal R M

    2008-01-01

    Some time ago we developed and published a new deterministic algorithm (called Cycle) for automatic selection of beam orientations in radiotherapy. This algorithm is a plan generation process aiming at the prescribed PTV dose within hard dose and dose-volume constraints. The algorithm allows a large number of input orientations to be used and selects only the most efficient orientations, surviving the selection process. Efficiency is determined by a score function and is more or less equal to the extent of uninhibited access to the PTV for a specific beam during the selection process. In this paper we compare the capabilities of fast-simulated annealing (FSA) and Cycle for cases where local optima are supposed to be present. Five pancreas and five oesophagus cases previously treated in our institute were selected for this comparison. Plans were generated for FSA and Cycle, using the same hard dose and dose-volume constraints, and the largest possible achieved PTV doses as obtained from these algorithms were compared. The largest achieved PTV dose values were generally very similar for the two algorithms. In some cases FSA resulted in a slightly higher PTV dose than Cycle, at the cost of switching on substantially more beam orientations than Cycle. In other cases, when Cycle generated the solution with the highest PTV dose using only a limited number of non-zero weight beams, FSA seemed to have some difficulty in switching off the unfavourable directions. Cycle was faster than FSA, especially for large-dimensional feasible spaces. In conclusion, for the cases studied in this paper, we have found that despite the inherent drawback of sequential search as used by Cycle (where Cycle could probably get trapped in a local optimum), Cycle is nevertheless able to find comparable or sometimes slightly better treatment plans in comparison with FSA (which in theory finds the global optimum) especially in large-dimensional beam weight spaces

  5. Automated selection of beam orientations and segmented intensity-modulated radiotherapy (IMRT) for treatment of oesophagus tumors

    International Nuclear Information System (INIS)

    Woudstra, Evert; Heijmen, Ben J.M.; Storchi, Pascal R.M.

    2005-01-01

    Background and purpose: For some treatment sites, there is evidence in the literature that five to nine equiangular input beam directions are enough for generating IMRT plans. For oesophagus cancer, there is a report showing that going from four to nine beams may even result in lower quality plans. In this paper, our previously published algorithm for automated beam angle selection (Cycle) has been extended to include segmented IMRT. For oesophagus cancer patients, we have investigated whether automated orientation selection from a large number of equiangular input beam directions (up to thirty-six) for IMRT optimisation can result in improved lung sparing. Materials and methods: CT-data from five oesophagus patients treated recently in our institute were used for this study. For a prescribed mean PTV dose of 55 Gy, Cycle was used in an iterative procedure to minimise the mean lung dose under the following hard constraints: standard deviation for PTV dose inhomogeneity 2% (1,1 Gy), maximum spinal cord dose 45 Gy. Conformal radiotherapy (CFRT) and IMRT plans for a standard four field oesophagus beam configuration were compared with IMRT plans generated by automated selection from nine or thirty-six equiangular input beam orientations. Comparisons were also made with dose distributions generated with our commercial treatment planning system (TPS), and with observations in the literature. Results: Using Cycle, automated orientation selection from nine or thirty-six input beam directions resulted in improved lung sparing compared to the four field set-ups. Compared to selection from nine input orientations, selection from thirty-six directions did always result in lower mean lung doses, sometimes with even fewer non-zero weight beams. On average only seven beams with a non-zero weight were enough for obtaining the lowest mean lung dose, yielding clinically feasible plans even in case of thirty-six input directions for the optimisation process. With our commercial TPS

  6. High levels of absorption in orientation-unbiased, radio-selected 3CR Active Galaxies

    Science.gov (United States)

    Wilkes, Belinda J.; Haas, Martin; Barthel, Peter; Leipski, Christian; Kuraszkiewicz, Joanna; Worrall, Diana; Birkinshaw, Mark; Willner, Steven P.

    2014-08-01

    A critical problem in understanding active galaxies (AGN) is the separation of intrinsic physical differences from observed differences that are due to orientation. Obscuration of the active nucleus is anisotropic and strongly frequency dependent leading to complex selection effects for observations in most wavebands. These can only be quantified using a sample that is sufficiently unbiased to test orientation effects. Low-frequency radio emission is one way to select a close-to orientation-unbiased sample, albeit limited to the minority of AGN with strong radio emission.Recent Chandra, Spitzer and Herschel observations combined with multi-wavelength data for a complete sample of high-redshift (1half the sample is significantly obscured with ratios of unobscured: Compton thin (22 24.2) = 2.5:1.4:1 in these high-luminosity (log L(0.3-8keV) ~ 44-46) sources. These ratios are consistent with current expectations based on modelingthe Cosmic X-ray Background. A strong correlation with radio orientation constrains the geometry of the obscuring disk/torus to have a ~60 degree opening angle and ~12 degree Compton-thick cross-section. The deduced ~50% obscured fraction of the population contrasts with typical estimates of ~20% obscured in optically- and X-ray-selected high-luminosity samples. Once the primary nuclear emission is obscured, AGN X-ray spectra are frequently dominated by unobscured non-nuclear or scattered nuclear emission which cannot be distinguished from direct nuclear emission with a lower obscuration level unless high quality data is available. As a result, both the level of obscuration and the estimated instrinsic luminosities of highly-obscured AGN are likely to be significantly (*10-1000) underestimated for 25-50% of the population. This may explain the lower obscured fractions reported for optical and X-ray samples which have no independent measure of the AGN luminosity. Correcting AGN samples for these underestimated luminosities would result in

  7. Content Management von Leittexten mit XML Topic Maps

    Directory of Open Access Journals (Sweden)

    Johannes Busse

    2003-07-01

    Full Text Available Die Autoren definieren den Umgang mit internet- basierten Informations- und Kommunikationstechnologien als Schlüsselqualifikation für Studierende aller Fachrichtungen. Im vorliegenden Aufsatz beschreiben sie ein Projekt, das der Fachbereich Erziehungswissenschaften der Universität Heidelberg seit 2001 durchführt. Hier werden Studierende der Geistes- und Sozialwissenschaften zu "Lernberatern" ausgebildet, die als Multiplikatoren die notwendigen Kenntnisse erwerben. Die Teilnehmenden erarbeiten nach der "Leittextmethode" selbstgesteuert xml-basierte Contents. Dies setzt den Erwerb von informationstechnischen Kenntnissen voraus, der neben dem Aufbau eines (sowohl technischen als auch sozialen Netzwerks einen Schwerpunkt bildet.

  8. Orientation selective neural network for cosmic muon identification

    International Nuclear Information System (INIS)

    Abramowicz, H.; Tel Aviv Univ.; Horn, D.; Naftaly, U.; Sahar-Pikielny, C.

    1997-01-01

    We discuss a novel method for identification of a linear pattern of pixels on a two-dimensional grid. Motivated by principles employed by the visual cortex, we construct orientation selective neurons in a neural network that performs this task. The method is then applied to a sample of data collected with the ZEUS detector at HERA in order to identify cosmic muons that leave a linear pattern of signals in the segmented uranium-scintillator calorimeter. A two dimensional representation of the relevant part of the detector is used. The algorithm performs well in the presence of noise and pixels with limited efficiency. Given its architecture, this system becomes a good candidate for fast pattern recognition in parallel processing devices. (orig.)

  9. Light at Night Markup Language (LANML): XML Technology for Light at Night Monitoring Data

    Science.gov (United States)

    Craine, B. L.; Craine, E. R.; Craine, E. M.; Crawford, D. L.

    2013-05-01

    Light at Night Markup Language (LANML) is a standard, based upon XML, useful in acquiring, validating, transporting, archiving and analyzing multi-dimensional light at night (LAN) datasets of any size. The LANML standard can accommodate a variety of measurement scenarios including single spot measures, static time-series, web based monitoring networks, mobile measurements, and airborne measurements. LANML is human-readable, machine-readable, and does not require a dedicated parser. In addition LANML is flexible; ensuring future extensions of the format will remain backward compatible with analysis software. The XML technology is at the heart of communicating over the internet and can be equally useful at the desktop level, making this standard particularly attractive for web based applications, educational outreach and efficient collaboration between research groups.

  10. Using XML/HTTP to Store, Serve and Annotate Tactical Scenarios for X3D Operational Visualization and Anti-Terrorist Training

    Science.gov (United States)

    2003-03-01

    PXSLServlet Paul A. Open Source Relational x X 23 Tchistopolskii sql2dtd David Mertz Public domain Relational x -- sql2xml Scott Hathaway Public...March 2003. [Hunter 2001] Hunter, David ; Cagle, Kurt; Dix, Chris; Kovack, Roger; Pinnock, Jonathan, Rafter, Jeff; Beginning XML (2nd Edition...Postgraduate School Monterey, California 4. Curt Blais Naval Postgraduate School Monterey, California 5 Erik Chaum NAVSEA Undersea

  11. European welfare regimes: Political orientations versus poverty

    Directory of Open Access Journals (Sweden)

    Josifidis Kosta

    2011-01-01

    Full Text Available This inquiry analyzes how political orientations shape welfare states and labour market institutions when seeking to reduce poverty. In order to identify effects of these two key variables, we conduct a panel regression analysis that includes two poverty measures: poverty rates before and after social spending. This inquiry considers 14 EU countries, and in the period from 1995 to 2008, which are grouped according to welfare state regimes. We consider Social Democratic, Corporatist, Mediterranean and Liberal welfare state regimes. Panel regression results indicate that political orientation engenders no significant statistically measurable effects on poverty rates before social spending. Effects register, however, as significant when considering poverty rates after social spending. With respect to the first set of results, we advance two key explanations. First, we note a longer period of time is necessary in order to observe actual effects of political orientation on market generated poverty. Second, political parties with their respective programs do not register as influential enough to solve social problems related to income distribution when taken alone. Influences register as indirect and are expressed through changes in employment rates and social spending. The second set of results support the hypothesis that a selected political regime does indeed contribute to poverty reduction. In sum, political orientation and political regime does indeed affect poverty through welfare state institutions, as well as through labour market institutions.

  12. XML technologies for the Omaha System: a data model, a Java tool and several case studies supporting home healthcare.

    Science.gov (United States)

    Vittorini, Pierpaolo; Tarquinio, Antonietta; di Orio, Ferdinando

    2009-03-01

    The eXtensible markup language (XML) is a metalanguage which is useful to represent and exchange data between heterogeneous systems. XML may enable healthcare practitioners to document, monitor, evaluate, and archive medical information and services into distributed computer environments. Therefore, the most recent proposals on electronic health records (EHRs) are usually based on XML documents. Since none of the existing nomenclatures were specifically developed for use in automated clinical information systems, but were adapted to such use, numerous current EHRs are organized as a sequence of events, each represented through codes taken from international classification systems. In nursing, a hierarchically organized problem-solving approach is followed, which hardly couples with the sequential organization of such EHRs. Therefore, the paper presents an XML data model for the Omaha System taxonomy, which is one of the most important international nomenclatures used in the home healthcare nursing context. Such a data model represents the formal definition of EHRs specifically developed for nursing practice. Furthermore, the paper delineates a Java application prototype which is able to manage such documents, shows the possibility to transform such documents into readable web pages, and reports several case studies, one currently managed by the home care service of a Health Center in Central Italy.

  13. Region-specificity of GABAA receptor mediated effects on orientation and direction selectivity in cat visual cortical area 18.

    Science.gov (United States)

    Jirmann, Kay-Uwe; Pernberg, Joachim; Eysel, Ulf T

    2009-01-01

    The role of GABAergic inhibition in orientation and direction selectivity has been investigated with the GABA(A)-Blocker bicuculline in the cat visual cortex, and results indicated a region specific difference of functional contributions of GABAergic inhibition in areas 17 and 18. In area 17 inhibition appeared mainly involved in sculpturing orientation and direction tuning, while in area 18 inhibition seemed more closely associated with temporal receptive field properties. However, different types of stimuli were used to test areas 17 and 18 and further studies performed in area 17 suggested an important influence of the stimulus type (single light bars vs. moving gratings) on the evoked responses (transient vs. sustained) and inhibitory mechanisms (GABA(A) vs. GABA(B)) which in turn might be more decisive for the specific results than the cortical region. To insert the missing link in this chain of arguments it was necessary to study GABAergic inhibition in area 18 with moving light bars, which has not been done so far. Therefore, in the present study we investigated area 18 cells responding to oriented moving light bars with extracellular recordings and reversible microiontophoretic blockade of GABAergig inhibition with bicuculline methiodide. The majority of neurons was characterized by a pronounced orientation specificity and variable degrees of direction selectivity. GABA(A)ergic inhibition significantly influenced preferred orientation and preferred direction in area 18. During the action of bicuculline orientation tuning width increased and orientation and direction selectivity indices decreased. Our results obtained in area 18 with moving bar stimuli, although in the proportion of affected cells similar to those described in area 17, quantitatively matched the findings for direction and orientation specificity obtained with moving gratings in area 18. Accordingly, stimulus type is not decisive in area 18 and the GABA(A) dependent, inhibitory intracortical

  14. Orientalism/Occidentalism

    NARCIS (Netherlands)

    Minca, C.; Ong, C.E.

    2017-01-01

    Orientalism and Occidentalism are interrelated concepts. Orientalism is defined in three keys ways: (i) as a study of “the Orient”; (ii) as a cultural and aesthetic concern with “the Orient”; and (iii) as a critical approach to understanding the construction of “the Orient” by European and American

  15. Site-Selective Orientated Immobilization of Antibodies and Conjugates for Immunodiagnostics Development

    Science.gov (United States)

    Rusling, James

    2016-01-01

    Immobilized antibody systems are the key to develop efficient diagnostics and separations tools. In the last decade, developments in the field of biomolecular engineering and crosslinker chemistry have greatly influenced the development of this field. With all these new approaches at our disposal, several new immobilization methods have been created to address the main challenges associated with immobilized antibodies. Few of these challenges that we have discussed in this review are mainly associated to the site-specific immobilization, appropriate orientation, and activity retention. We have discussed the effect of antibody immobilization approaches on the parameters on the performance of an immunoassay. PMID:27876681

  16. XTCE: XML Telemetry and Command Exchange Tutorial, XTCE Version 1

    Science.gov (United States)

    Rice, Kevin; Kizzort, Brad

    2008-01-01

    These presentation slides are a tutorial on XML Telemetry and Command Exchange (XTCE). The goal of XTCE is to provide an industry standard mechanism for describing telemetry and command streams (particularly from satellites.) it wiill lower cost and increase validation over traditional formats, and support exchange or native format.XCTE is designed to describe bit streams, that are typical of telemetry and command in the historic space domain.

  17. Orientation selectivity in inhibition-dominated networks of spiking neurons: effect of single neuron properties and network dynamics.

    Science.gov (United States)

    Sadeh, Sadra; Rotter, Stefan

    2015-01-01

    The neuronal mechanisms underlying the emergence of orientation selectivity in the primary visual cortex of mammals are still elusive. In rodents, visual neurons show highly selective responses to oriented stimuli, but neighboring neurons do not necessarily have similar preferences. Instead of a smooth map, one observes a salt-and-pepper organization of orientation selectivity. Modeling studies have recently confirmed that balanced random networks are indeed capable of amplifying weakly tuned inputs and generating highly selective output responses, even in absence of feature-selective recurrent connectivity. Here we seek to elucidate the neuronal mechanisms underlying this phenomenon by resorting to networks of integrate-and-fire neurons, which are amenable to analytic treatment. Specifically, in networks of perfect integrate-and-fire neurons, we observe that highly selective and contrast invariant output responses emerge, very similar to networks of leaky integrate-and-fire neurons. We then demonstrate that a theory based on mean firing rates and the detailed network topology predicts the output responses, and explains the mechanisms underlying the suppression of the common-mode, amplification of modulation, and contrast invariance. Increasing inhibition dominance in our networks makes the rectifying nonlinearity more prominent, which in turn adds some distortions to the otherwise essentially linear prediction. An extension of the linear theory can account for all the distortions, enabling us to compute the exact shape of every individual tuning curve in our networks. We show that this simple form of nonlinearity adds two important properties to orientation selectivity in the network, namely sharpening of tuning curves and extra suppression of the modulation. The theory can be further extended to account for the nonlinearity of the leaky model by replacing the rectifier by the appropriate smooth input-output transfer function. These results are robust and do not

  18. Orientation selectivity in inhibition-dominated networks of spiking neurons: effect of single neuron properties and network dynamics.

    Directory of Open Access Journals (Sweden)

    Sadra Sadeh

    2015-01-01

    Full Text Available The neuronal mechanisms underlying the emergence of orientation selectivity in the primary visual cortex of mammals are still elusive. In rodents, visual neurons show highly selective responses to oriented stimuli, but neighboring neurons do not necessarily have similar preferences. Instead of a smooth map, one observes a salt-and-pepper organization of orientation selectivity. Modeling studies have recently confirmed that balanced random networks are indeed capable of amplifying weakly tuned inputs and generating highly selective output responses, even in absence of feature-selective recurrent connectivity. Here we seek to elucidate the neuronal mechanisms underlying this phenomenon by resorting to networks of integrate-and-fire neurons, which are amenable to analytic treatment. Specifically, in networks of perfect integrate-and-fire neurons, we observe that highly selective and contrast invariant output responses emerge, very similar to networks of leaky integrate-and-fire neurons. We then demonstrate that a theory based on mean firing rates and the detailed network topology predicts the output responses, and explains the mechanisms underlying the suppression of the common-mode, amplification of modulation, and contrast invariance. Increasing inhibition dominance in our networks makes the rectifying nonlinearity more prominent, which in turn adds some distortions to the otherwise essentially linear prediction. An extension of the linear theory can account for all the distortions, enabling us to compute the exact shape of every individual tuning curve in our networks. We show that this simple form of nonlinearity adds two important properties to orientation selectivity in the network, namely sharpening of tuning curves and extra suppression of the modulation. The theory can be further extended to account for the nonlinearity of the leaky model by replacing the rectifier by the appropriate smooth input-output transfer function. These results are

  19. Upgrading a TCABR data analysis and acquisition system for remote participation using Java, XML, RCP and modern client/server communication/authentication

    International Nuclear Information System (INIS)

    Sa, W.P. de

    2010-01-01

    The TCABR data analysis and acquisition system has been upgraded to support a joint research programme using remote participation technologies. The architecture of the new system uses Java language as programming environment. Since application parameters and hardware in a joint experiment are complex with a large variability of components, requirements and specification solutions need to be flexible and modular, independent from operating system and computer architecture. To describe and organize the information on all the components and the connections among them, systems are developed using the eXtensible Markup Language (XML) technology. The communication between clients and servers uses remote procedure call (RPC) based on the XML (RPC-XML technology). The integration among Java language, XML and RPC-XML technologies allows to develop easily a standard data and communication access layer between users and laboratories using common software libraries and Web application. The libraries allow data retrieval using the same methods for all user laboratories in the joint collaboration, and the Web application allows a simple graphical user interface (GUI) access. The TCABR tokamak team in collaboration with the IPFN (Instituto de Plasmas e Fusao Nuclear, Instituto Superior Tecnico, Universidade Tecnica de Lisboa) is implementing this remote participation technologies. The first version was tested at the Joint Experiment on TCABR (TCABRJE), a Host Laboratory Experiment, organized in cooperation with the IAEA (International Atomic Energy Agency) in the framework of the IAEA Coordinated Research Project (CRP) on 'Joint Research Using Small Tokamaks'.

  20. Upgrading a TCABR data analysis and acquisition system for remote participation using Java, XML, RCP and modern client/server communication/authentication

    Energy Technology Data Exchange (ETDEWEB)

    Sa, W.P. de, E-mail: pires@if.usp.b [Instituto de Fisica, Universidade de Sao Paulo, Rua do Matao, Travessa R, 187 CEP 05508-090 Cidade Universitaria, Sao Paulo (Brazil)

    2010-07-15

    The TCABR data analysis and acquisition system has been upgraded to support a joint research programme using remote participation technologies. The architecture of the new system uses Java language as programming environment. Since application parameters and hardware in a joint experiment are complex with a large variability of components, requirements and specification solutions need to be flexible and modular, independent from operating system and computer architecture. To describe and organize the information on all the components and the connections among them, systems are developed using the eXtensible Markup Language (XML) technology. The communication between clients and servers uses remote procedure call (RPC) based on the XML (RPC-XML technology). The integration among Java language, XML and RPC-XML technologies allows to develop easily a standard data and communication access layer between users and laboratories using common software libraries and Web application. The libraries allow data retrieval using the same methods for all user laboratories in the joint collaboration, and the Web application allows a simple graphical user interface (GUI) access. The TCABR tokamak team in collaboration with the IPFN (Instituto de Plasmas e Fusao Nuclear, Instituto Superior Tecnico, Universidade Tecnica de Lisboa) is implementing this remote participation technologies. The first version was tested at the Joint Experiment on TCABR (TCABRJE), a Host Laboratory Experiment, organized in cooperation with the IAEA (International Atomic Energy Agency) in the framework of the IAEA Coordinated Research Project (CRP) on 'Joint Research Using Small Tokamaks'.

  1. Useful oriented immobilization of antibodies on chimeric magnetic particles: direct correlation of biomacromolecule orientation with biological activity by AFM studies.

    Science.gov (United States)

    Marciello, Marzia; Filice, Marco; Olea, David; Velez, Marisela; Guisan, José M; Mateo, Cesar

    2014-12-16

    The preparation and performance of a suitable chimeric biosensor based on antibodies (Abs) immobilized on lipase-coated magnetic particles by means of a standing orienting strategy are presented. This novel system is based on hydrophobic magnetic particles coated with modified lipase molecules able to orient and further immobilize different Abs in a covalent way without any previous site-selective chemical modification of biomacromolecules. Different key parameters attending the process were studied and optimized. The optimal preparation was performed using a controlled loading (1 nmol Ab g(-1) chimeric support) at pH 9 and a short reaction time to recover a biological activity of about 80%. AFM microscopy was used to study and confirm the Abs-oriented immobilization on lipase-coated magnetic particles and the final achievement of a highly active and recyclable chimeric immune sensor. This direct technique was demonstrated to be a powerful alternative to the indirect immunoactivity assay methods for the study of biomacromolecule-oriented immobilizations.

  2. UPX: a new XML representation for annotated datasets of online handwriting data

    NARCIS (Netherlands)

    Agrawal, M.; Bali, K.; Madhvanath, S.; Vuurpijl, L.G.

    2005-01-01

    This paper introduces our efforts to create UPX, an XML-based successor to the venerable UNIPEN format for the representation of annotated datasets of online handwriting data. In the first part of the paper, shortcomins of the UNIPEN format are dicussed and the goals of UPX are outlined. Prior work

  3. The Knowledge Sharing Based on PLIB Ontology and XML for Collaborative Product Commerce

    Science.gov (United States)

    Ma, Jun; Luo, Guofu; Li, Hao; Xiao, Yanqiu

    Collaborative Product Commerce (CPC) has become a brand-new commerce mode for manufacture. In order to promote information communication with each other more efficiently in CPC, a knowledge-sharing framework based on PLIB (ISO 13584) ontology and XML was presented, and its implementation method was studied. At first, according to the methodology of PLIB (ISO 13584), a common ontology—PLIB ontology was put forward which provide a coherent conceptual meaning within the context of CPC domain. Meanwhile, for the sake of knowledge intercommunion via internet, the PLIB ontology formalization description by EXPRESS mode was converted into XML Schema, and two mapping methods were presented: direct mapping approach and meta-levels mapping approach, while the latter was adopted. Based on above work, a parts resource knowledge-sharing framework (CPC-KSF) was put forward and realized, which has been applied in the process of automotive component manufacturing collaborative product commerce.

  4. RULES FOR SELECTING AND USING KEY PERFORMANCE INDICATORS FOR THE SERVICE INDUSTRY

    Directory of Open Access Journals (Sweden)

    Alexandra - Elena RUSĂNEANU

    2014-06-01

    Full Text Available There is no question that performance is the desired result of every activity or action. In order to correctly measure an organization’s performance it is necessary to select key performance indicators (KPIs that will deliver long-term value to the company. KPIs are presenting performance information for all levels of the organization and they are reflecting the progress made so far to achieve strategic objectives. The selection of the key performance indicators must be made according to the organization’s industry and activity. The company must truly understand its business and its mission. Also, KPIs must be closely linked to the strategic objectives. The focus of this research is to present effective rules for defining key performance indicators for the Service industry. This sector of economy consists in generating intangible goods like experience, expertise and information. Therefore, monitoring this type of services requires a different approach when defining performance indicators compared to the manufacturing industry.

  5. Developing and Deploying an XML-based Learning Content Management System at the FernUniversität Hagen

    Directory of Open Access Journals (Sweden)

    Gerd Steinkamp

    2005-02-01

    Full Text Available This paper is a report about the FuXML project carried out at the FernUniversität Hagen. FuXML is a Learning Content Management System (LCMS aimed at providing a practical and efficient solution for the issues attributed to authoring, maintenance, production and distribution of online and offline distance learning material. The paper presents the environment for which the system was conceived and describes the technical realisation. We discuss the reasons for specific implementation decisions and also address the integration of the system within the organisational and technical infrastructure of the university.

  6. Spatial confinement governs orientational order in patchy particles

    Science.gov (United States)

    Iwashita, Yasutaka; Kimura, Yasuyuki

    2016-06-01

    Orientational order in condensed matter plays a key role in determining material properties such as ferromagnetism, viscoelasticity or birefringence. We studied purely orientational ordering in closely-packed one-patch colloidal particles confined between flat substrates, where the particles can only rotate and are ordered via the sticky interaction between the patches. For the first time, we experimentally realized a rich variety of mesoscopic patterns through orientational ordering of colloids by controlling patch size and confinement thickness. The combination of experiment and numerical simulation reveals the decisive role of confinement: An ordered state(s) is selected from the (meta)stable options in bulk when it is commensurate with the system geometry and boundary conditions; otherwise, frustration induces a unique order. Our study offers a new means of systematic control over mesoscopic structures via orientational ordering in patchy particles. The system would also possess unique functionalities through the rotational response of the particles to external stimuli.

  7. Selecting of key safety parameters in reactor nuclear safety supervision

    International Nuclear Information System (INIS)

    He Fan; Yu Hong

    2014-01-01

    The safety parameters indicate the operational states and safety of research reactor are the basis of nuclear safety supervision institution to carry out effective supervision to nuclear facilities. In this paper, the selecting of key safety parameters presented by the research reactor operating unit to National Nuclear Safety Administration that can express the research reactor operational states and safety when operational occurrence or nuclear accident happens, and the interrelationship between them are discussed. Analysis shows that, the key parameters to nuclear safety supervision of research reactor including design limits, operational limits and conditions, safety system settings, safety limits, acceptable limits and emergency action level etc. (authors)

  8. Enhancement of the Work in Scia Engineer's Environment by Employment of XML Programming Language

    Directory of Open Access Journals (Sweden)

    Kortiš Ján

    2015-12-01

    Full Text Available The productivity of the work of engineers in the design of building structures by applying the rules of technical standards [1] has been increasing by using different software products for recent years. The software products offer engineers new possibilities to design different structures. However, there are problems especially for design of structures with similar static schemes as it is needed to follow the same work-steps. This can be more effective if the steps are done automatically by using a programming language for leading the processes that are done by software. The design process of timber structure which is done in the environment of Scia Engineer software is presented in the article. XML Programming Language is used for automatization of the design and the XML code is modified in the Excel environment by using VBA Programming language [2], [3].

  9. Value of XML in the implementation of clinical practice guidelines--the issue of content retrieval and presentation.

    Science.gov (United States)

    Hoelzer, S; Schweiger, R K; Boettcher, H A; Tafazzoli, A G; Dudeck, J

    2001-01-01

    that preserves the original cohesiveness. The lack of structure limits the automatic identification and extraction of the information contained in these resources. For this reason, we have chosen a document-based approach using eXtensible Markup Language (XML) with its schema definition and related technologies. XML empowers the applications for in-context searching. In addition it allows the same content to be represented in different ways. Our XML reference clinical data model for guidelines has been realized with the XML schema definition. The schema is used for structuring new text-based guidelines and updating existing documents. It is also used to establish search strategies on the document base. We hypothesize that enabling the physicians to query the available CPGs easily, and to get access to selected and specific information at the point of care will foster increased use. Based on current evidence we are confident that it will have substantial impact on the care provided, and will improve health outcomes.

  10. Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML database--Xindice.

    Science.gov (United States)

    Li, Feng; Li, Maoyu; Xiao, Zhiqiang; Zhang, Pengfei; Li, Jianling; Chen, Zhuchu

    2006-01-11

    Many proteomics initiatives require integration of all information with uniformcriteria from collection of samples and data display to publication of experimental results. The integration and exchanging of these data of different formats and structure imposes a great challenge to us. The XML technology presents a promise in handling this task due to its simplicity and flexibility. Nasopharyngeal carcinoma (NPC) is one of the most common cancers in southern China and Southeast Asia, which has marked geographic and racial differences in incidence. Although there are some cancer proteome databases now, there is still no NPC proteome database. The raw NPC proteome experiment data were captured into one XML document with Human Proteome Markup Language (HUP-ML) editor and imported into native XML database Xindice. The 2D/MS repository of NPC proteome was constructed with Apache, PHP and Xindice to provide access to the database via Internet. On our website, two methods, keyword query and click query, were provided at the same time to access the entries of the NPC proteome database. Our 2D/MS repository can be used to share the raw NPC proteomics data that are generated from gel-based proteomics experiments. The database, as well as the PHP source codes for constructing users' own proteome repository, can be accessed at http://www.xyproteomics.org/.

  11. APROXIMACIÓN A LA REPRESENTACIÓN EN XML DE OBJETOS DICOM PARA FOTOGRAFÍA MÉDICA DIGITAL

    Directory of Open Access Journals (Sweden)

    Carlos Ruiz

    2007-12-01

    Full Text Available El estándar DICOM (Digital Imaging and Communication in Medicine es un protocolo no propietario para el intercambio de información médica. DICOM representa y define la información de objetos del mundo real tales como una resonancia magnética (MRI, una tomografía computarizada (CT y una fotografía médica digital (VL Photographic, por medio de definiciones de objeto de información llamados IOD. El presente artículo describe una metodología para representar el IOD de una fotografía médica digital de luz visible (VL Photographic Image por intermedio de documentos XML Schema. Estos documentos se utilizan en la creación y validación de documentos XML para representar información clínica técnica asociada a fotografías médicas digitales para su posterior implementación en una aplicación web de teledermatología.DICOM standard (Digital Imaging and Communication in Medicine is a non-proprietary protocol for the medical exchange information. DICOM represents and defines the information of real world objects like a magnetic resonance image (MRI, a computerized axial tomography and a digital medical photography (VL photographic, through information object definitions called IOD. The present article describes a methodology to represent the IOD of a digital medical photography of visible light (VL Photographic Image through XML Schema documents. These documents were used in the creation and validation of XML documents to represent digital medical photographies compiling clinical and technical information for their later implementation in a teledermatology application.

  12. Toward a Normalized XML Schema for the GGP Data Archives

    Directory of Open Access Journals (Sweden)

    Alban Gabillon

    2013-04-01

    Full Text Available Since 1997, the Global Geodynamics Project (GGP stations have used a text-based data format. The main drawback of this type of data coding is the lack of data integrity during the data flow processing. As a result, metadata and even data must be checked by human operators. In this paper, we propose a new format for representing the GGP data. This new format is based on the eXtensible Markup Language (XML.

  13. Creating Open Digital Library Using XML Implementation of OAi-PMH Protocol at CERN

    CERN Document Server

    Vesely, M; Le Meur, Jean-Yves; Simko, Tibor

    2002-01-01

    This article describes the implementation of the OAi-PMH protocol within the CERN Document Server (CDS). In terms of the protocol, CERN acts both as a data provider and service provider and the two core applications are described. The application of XML Schema and XSLT technology is emphasized.

  14. Creating Open Digital Library Using XML: Implementation of OAi-PMH Protocol at CERN

    OpenAIRE

    Vesely, M; Baron, T; Le Meur, Jean-Yves; Simko, Tibor

    2002-01-01

    This article describes the implementation of the OAi-PMH protocol within the CERN Document Server (CDS). In terms of the protocol, CERN acts both as a data provider and service provider and the two core applications are described. The application of XML Schema and XSLT technology is emphasized.

  15. DEVELOPING FLEXIBLE APPLICATIONS WITH XML AND DATABASE INTEGRATION

    Directory of Open Access Journals (Sweden)

    Hale AS

    2004-04-01

    Full Text Available In recent years the most popular subject in Information System area is Enterprise Application Integration (EAI. It can be defined as a process of forming a standart connection between different systems of an organization?s information system environment. The incorporating, gaining and marriage of corporations are the major reasons of popularity in Enterprise Application Integration. The main purpose is to solve the application integrating problems while similar systems in such corporations continue working together for a more time. With the help of XML technology, it is possible to find solutions to the problems of application integration either within the corporation or between the corporations.

  16. Non-coplanar automatic beam orientation selection in cranial IMRT: a practical methodology

    Energy Technology Data Exchange (ETDEWEB)

    Llacer, Jorge [EC Engineering Consultants LLC, 130 Forest Hill Drive, Los Gatos, CA 95032 (United States); Li Sicong [Department of Radiation Oncology, University of Nebraska Medical Center, Omaha, NE 68198 (United States); Agazaryan, Nzhde; Solberg, Timothy D [Department of Radiation Oncology, University of California, Los Angeles, CA 90095 (United States); Promberger, Claus [BrainLAB AG, Kapellenstrasse 12, 85622 Feldkirchen (Germany)], E-mail: escalivat@jllacer.com, E-mail: sl1@unmc.edu, E-mail: NAgazaryan@mednet.ucla.edu, E-mail: claus.promberger@brainlab.com, E-mail: Timothy.Solberg@utsouthwestern.edu

    2009-03-07

    This paper proposes a method for automatic selection of beam orientations in non-coplanar cranial IMRT. Methods of computer vision, beam's eye view techniques and neural networks are used to define a new geometry-based methodology that leads to treatment plans for cranial lesions that are comparable in quality to those generated by experienced radiation physicists. The automatic beam selection (ABS) process can be carried out in clinically useful computation times, in 1 min or less for most cases. In the process of describing the ABS process, it is shown that the cranial beam orientation optimization problem is mathematically ill posed, with the expectation that a large number of solutions will lead to similar results. Nevertheless, there are better and worse solutions and we show that the proposed ABS process, by its design, has to lead to one of the better ones. We have carried out extensive tests with 14 patients with beam selection tasks ranging from the rather simple to quite complex. The ABS process has always yielded optimizations with results that are considered good for clinic use. Seven-beam coplanar optimizations for some of the patients have also been investigated. Comparisons with non-coplanar optimizations indicate in which cases the simpler coplanar plans can be used to advantage. Parameters used in the comparisons are dose-volume histograms, minimum and maximum PTV doses, equivalent uniform doses for the PTV and OARs, and treatment volume, conformity and normal tissue indices. It is felt that the current ABS methodology is ready for extensive clinical tests.

  17. Lapin Data Interchange Among Database, Analysis and Display Programs Using XML-Based Text Files

    Science.gov (United States)

    2005-01-01

    The purpose of grant NCC3-966 was to investigate and evaluate the interchange of application-specific data among multiple programs each carrying out part of the analysis and design task. This has been carried out previously by creating a custom program to read data produced by one application and then write that data to a file whose format is specific to the second application that needs all or part of that data. In this investigation, data of interest is described using the XML markup language that allows the data to be stored in a text-string. Software to transform output data of a task into an XML-string and software to read an XML string and extract all or a portion of the data needed for another application is used to link two independent applications together as part of an overall design effort. This approach was initially used with a standard analysis program, Lapin, along with standard applications a standard spreadsheet program, a relational database program, and a conventional dialog and display program to demonstrate the successful sharing of data among independent programs. Most of the effort beyond that demonstration has been concentrated on the inclusion of more complex display programs. Specifically, a custom-written windowing program organized around dialogs to control the interactions have been combined with an independent CAD program (Open Cascade) that supports sophisticated display of CAD elements such as lines, spline curves, and surfaces and turbine-blade data produced by an independent blade design program (UD0300).

  18. Key Techniques for the Development of Web-Based PDM System

    Institute of Scientific and Technical Information of China (English)

    WANG Li-juan; ZHANG Xu; NING Ru-xin

    2006-01-01

    Some key techniques for the development of web-based product data management (PDM) system are introduced. The four-tiered B/S architecture of a PDM system-BITPDM is introduced first, followed by its design and implementation, including virtual data vault, flexible coding system, document management,product structure and configuration management, workflow/process and product maturity management. BITPDM can facilitate the activities from new product introduction phase to manufacturing, and manage the product data and their dynamic changing history. Based on Microsoft. NET, XML, web service and SOAP techniques, BITPDM realizes the integration and efficient management of product information.

  19. Patterns in Standards and Technologies for Economic Information Systems Interoperability

    Directory of Open Access Journals (Sweden)

    Vasile Irimia

    2012-06-01

    Full Text Available This paper presets results from a review of the current standards used for collaboration between economic information systems, including web services and service oriented architecture, EDI, ebXML framework, RosettaNet framework, cXML, xCBL UBL, BPMN, BPEL, WS-CDL, ASN.1, and others. Standards have a key role in promoting economic information system interoperability, and thus enable collaboration. Analyzing the current standards, technologies and applications used for economic information systems interoperability has revealed a common pattern that runs through all of them. From this pattern we construct a basic model of interoperability around which we relate and judge all standards, technologies and applications for economic information systems interoperability.

  20. A Semantic Analysis of XML Schema Matching for B2B Systems Integration

    Science.gov (United States)

    Kim, Jaewook

    2011-01-01

    One of the most critical steps to integrating heterogeneous e-Business applications using different XML schemas is schema matching, which is known to be costly and error-prone. Many automatic schema matching approaches have been proposed, but the challenge is still daunting because of the complexity of schemas and immaturity of technologies in…

  1. Market Orientation and Innovators’ Success: an Exploration of the Influence of Customer and Competitor Orientation

    Directory of Open Access Journals (Sweden)

    Michael Lewrick

    2011-08-01

    Full Text Available The concepts of market orientation and innovation and their interrelationship with business success have been explored from a number of perspectives. However, research in this area has not explored the differences between start-up and mature companies. The research study acquired data from over two hundred Chief Operating Officers (CEO’s and Managing Directors from both start-up and mature companies. The results illustrate the differences in both types of company and reveals new insights with regard to market orientation and its constituent elements and its relationship with both incremental and radical innovations. Key research results are that strong competitor orientation, a key ingredient of market orientation, has positive relationship to incremental innovation for start-up companies but it is contra productive for mature companies. In mature organizations a strong customer orientation is associated with radical innovation.

  2. An XML Approach of Coding a Morphological Database for Arabic Language

    OpenAIRE

    Gridach, Mourad; Chenfour, Noureddine

    2011-01-01

    We present an XML approach for the production of an Arabic morphological database for Arabic language that will be used in morphological analysis for modern standard Arabic (MSA). Optimizing the production, maintenance, and extension of morphological database is one of the crucial aspects impacting natural language processing (NLP). For Arabic language, producing a morphological database is not an easy task, because this it has some particularities such as the phenomena of agglutination and a...

  3. Construction of a nasopharyngeal carcinoma 2D/MS repository with Open Source XML Database – Xindice

    Directory of Open Access Journals (Sweden)

    Li Jianling

    2006-01-01

    Full Text Available Abstract Background Many proteomics initiatives require integration of all information with uniformcriteria from collection of samples and data display to publication of experimental results. The integration and exchanging of these data of different formats and structure imposes a great challenge to us. The XML technology presents a promise in handling this task due to its simplicity and flexibility. Nasopharyngeal carcinoma (NPC is one of the most common cancers in southern China and Southeast Asia, which has marked geographic and racial differences in incidence. Although there are some cancer proteome databases now, there is still no NPC proteome database. Results The raw NPC proteome experiment data were captured into one XML document with Human Proteome Markup Language (HUP-ML editor and imported into native XML database Xindice. The 2D/MS repository of NPC proteome was constructed with Apache, PHP and Xindice to provide access to the database via Internet. On our website, two methods, keyword query and click query, were provided at the same time to access the entries of the NPC proteome database. Conclusion Our 2D/MS repository can be used to share the raw NPC proteomics data that are generated from gel-based proteomics experiments. The database, as well as the PHP source codes for constructing users' own proteome repository, can be accessed at http://www.xyproteomics.org/.

  4. Defining the XML schema matching problem for a personal schema based query answering system

    NARCIS (Netherlands)

    Smiljanic, M.; van Keulen, Maurice; Jonker, Willem

    In this report, we analyze the problem of personal schema matching. We define the ingredients of the XML schema matching problem using constraint logic programming. This allows us to thourougly investigate specific matching problems. We do not have the ambition to provide for a formalism that covers

  5. An XML-Based Knowledge Management System of Port Information for U.S. Coast Guard Cutters

    National Research Council Canada - National Science Library

    Stewart, Jeffrey

    2003-01-01

    .... The system uses XML technologies in server/client and stand alone environments. With a web browser, the user views and navigates the system's content from a downloaded file collection or from a centralized data source via a network connection...

  6. Metadata aided run selection at ATLAS

    International Nuclear Information System (INIS)

    Buckingham, R M; Gallas, E J; Tseng, J C-L; Viegas, F; Vinek, E

    2011-01-01

    Management of the large volume of data collected by any large scale scientific experiment requires the collection of coherent metadata quantities, which can be used by reconstruction or analysis programs and/or user interfaces, to pinpoint collections of data needed for specific purposes. In the ATLAS experiment at the LHC, we have collected metadata from systems storing non-event-wise data (Conditions) into a relational database. The Conditions metadata (COMA) database tables not only contain conditions known at the time of event recording, but also allow for the addition of conditions data collected as a result of later analysis of the data (such as improved measurements of beam conditions or assessments of data quality). A new web based interface called 'runBrowser' makes these Conditions Metadata available as a Run based selection service. runBrowser, based on PHP and JavaScript, uses jQuery to present selection criteria and report results. It not only facilitates data selection by conditions attributes, but also gives the user information at each stage about the relationship between the conditions chosen and the remaining conditions criteria available. When a set of COMA selections are complete, runBrowser produces a human readable report as well as an XML file in a standardized ATLAS format. This XML can be saved for later use or refinement in a future runBrowser session, shared with physics/detector groups, or used as input to ELSSI (event level Metadata browser) or other ATLAS run or event processing services.

  7. Prediction-Oriented Marker Selection (PROMISE): With Application to High-Dimensional Regression.

    Science.gov (United States)

    Kim, Soyeon; Baladandayuthapani, Veerabhadran; Lee, J Jack

    2017-06-01

    In personalized medicine, biomarkers are used to select therapies with the highest likelihood of success based on an individual patient's biomarker/genomic profile. Two goals are to choose important biomarkers that accurately predict treatment outcomes and to cull unimportant biomarkers to reduce the cost of biological and clinical verifications. These goals are challenging due to the high dimensionality of genomic data. Variable selection methods based on penalized regression (e.g., the lasso and elastic net) have yielded promising results. However, selecting the right amount of penalization is critical to simultaneously achieving these two goals. Standard approaches based on cross-validation (CV) typically provide high prediction accuracy with high true positive rates but at the cost of too many false positives. Alternatively, stability selection (SS) controls the number of false positives, but at the cost of yielding too few true positives. To circumvent these issues, we propose prediction-oriented marker selection (PROMISE), which combines SS with CV to conflate the advantages of both methods. Our application of PROMISE with the lasso and elastic net in data analysis shows that, compared to CV, PROMISE produces sparse solutions, few false positives, and small type I + type II error, and maintains good prediction accuracy, with a marginal decrease in the true positive rates. Compared to SS, PROMISE offers better prediction accuracy and true positive rates. In summary, PROMISE can be applied in many fields to select regularization parameters when the goals are to minimize false positives and maximize prediction accuracy.

  8. Report on the first Twente Data Management Workshop on XML Databases and Information Retrieval

    NARCIS (Netherlands)

    Hiemstra, Djoerd; Mihajlovic, V.

    2004-01-01

    The Database Group of the University of Twente initiated a new series of workshops called Twente Data Management workshops (TDM), starting with one on XML Databases and Information Retrieval which took place on 21 June 2004 at the University of Twente. We have set ourselves two goals for the

  9. 文件物件模型及其在XML文件處理之應用 Document Object Model and Its Application on XML Document Processing

    Directory of Open Access Journals (Sweden)

    Sinn-cheng Lin

    2001-06-01

    Full Text Available 無Document Object Model (DOM is an application-programming interface that can be applied to process XML documents. It defines the logical structure, the accessing interfaces and the operation methods for the document. In the DOM, an original document is mapped to a tree structure. Therefore ,the computer program can easily traverse the tree manipulate the nodes in the tree. In this paper, the fundamental models, definitions and specifications of DOM are surveyed. Then we create an experimenta1 system of DOM called XML On-Line Parser. The front-end of the system is built by the Web-based user interface for the XML document input and the parsed result output. On the other hand, the back-end of the system is built by an ASP program, which transforms the original document to DOM tree for document manipulation. This on-line system can be linked with a general-purpose web browser to check the well-formedness and the validity of the XML documents.

  10. Key success factors for brand orientation in Dutch hospitals

    NARCIS (Netherlands)

    Judith Tielen; Dr. Gerrita van der Veen

    2016-01-01

    he reorientation of the public sector along market lines has led to the paradigm of New Public Management (NPM): the assumption that the public sector can be improved by management principles and techniques traditionally associated with the private sector. However, market orientation has also become

  11. QuakeML: status of the XML-based seismological data exchange format

    OpenAIRE

    Joachim Saul; Philipp Kästli; Fabian Euchner; Danijel Schorlemmer

    2011-01-01

    QuakeML is an XML-based data exchange standard for seismology that is in its fourth year of active community-driven development. Its development was motivated by the need to consolidate existing data formats for applications in statistical seismology, as well as setting a cutting-edge, community-agreed standard to foster interoperability of distributed infrastructures. The current release (version 1.2) is based on a public Request for Comments process and accounts for suggestions and comments...

  12. A general XML schema and SPM toolbox for storage of neuro-imaging results and anatomical labels.

    Science.gov (United States)

    Keator, David Bryant; Gadde, Syam; Grethe, Jeffrey S; Taylor, Derek V; Potkin, Steven G

    2006-01-01

    With the increased frequency of multisite, large-scale collaborative neuro-imaging studies, the need for a general, self-documenting framework for the storage and retrieval of activation maps and anatomical labels becomes evident. To address this need, we have developed and extensible markup language (XML) schema and associated tools for the storage of neuro-imaging activation maps and anatomical labels. This schema, as part of the XML-based Clinical Experiment Data Exchange (XCEDE) schema, provides storage capabilities for analysis annotations, activation threshold parameters, and cluster and voxel-level statistics. Activation parameters contain information describing the threshold, degrees of freedom, FWHM smoothness, search volumes, voxel sizes, expected voxels per cluster, and expected number of clusters in the statistical map. Cluster and voxel statistics can be stored along with the coordinates, threshold, and anatomical label information. Multiple threshold types can be documented for a given cluster or voxel along with the uncorrected and corrected probability values. Multiple atlases can be used to generate anatomical labels and stored for each significant voxel or cluter. Additionally, a toolbox for Statistical Parametric Mapping software (http://www. fil. ion.ucl.ac.uk/spm/) was created to capture the results from activation maps using the XML schema that supports both SPM99 and SPM2 versions (http://nbirn.net/Resources/Users/ Applications/xcede/SPM_XMLTools.htm). Support for anatomical labeling is available via the Talairach Daemon (http://ric.uthscsa. edu/projects/talairachdaemon.html) and Automated Anatomical Labeling (http://www. cyceron.fr/freeware/).

  13. Ontology aided modeling of organic reaction mechanisms with flexible and fragment based XML markup procedures.

    Science.gov (United States)

    Sankar, Punnaivanam; Aghila, Gnanasekaran

    2007-01-01

    The mechanism models for primary organic reactions encoding the structural fragments undergoing substitution, addition, elimination, and rearrangements are developed. In the proposed models, each and every structural component of mechanistic pathways is represented with flexible and fragment based markup technique in XML syntax. A significant feature of the system is the encoding of the electron movements along with the other components like charges, partial charges, half bonded species, lone pair electrons, free radicals, reaction arrows, etc. needed for a complete representation of reaction mechanism. The rendering of reaction schemes described with the proposed methodology is achieved with a concise XML extension language interoperating with the structure markup. The reaction scheme is visualized as 2D graphics in a browser by converting them into SVG documents enabling the desired layouts normally perceived by the chemists conventionally. An automatic representation of the complex patterns of the reaction mechanism is achieved by reusing the knowledge in chemical ontologies and developing artificial intelligence components in terms of axioms.

  14. Visual Orientation and Directional Selectivity through Thalamic Synchrony

    Science.gov (United States)

    Stanley, Garrett B.; Jin, Jianzhong; Wang, Yushi; Desbordes, Gaëlle; Wang, Qi; Black, Michael J.; Alonso, Jose-Manuel

    2012-01-01

    Thalamic neurons respond to visual scenes by generating synchronous spike trains on the timescale of 10 – 20 ms that are very effective at driving cortical targets. Here we demonstrate that this synchronous activity contains unexpectedly rich information about fundamental properties of visual stimuli. We report that the occurrence of synchronous firing of cat thalamic cells with highly overlapping receptive fields is strongly sensitive to the orientation and the direction of motion of the visual stimulus. We show that this stimulus selectivity is robust, remaining relatively unchanged under different contrasts and temporal frequencies (stimulus velocities). A computational analysis based on an integrate-and-fire model of the direct thalamic input to a layer 4 cortical cell reveals a strong correlation between the degree of thalamic synchrony and the nonlinear relationship between cortical membrane potential and the resultant firing rate. Together, these findings suggest a novel population code in the synchronous firing of neurons in the early visual pathway that could serve as the substrate for establishing cortical representations of the visual scene. PMID:22745507

  15. Upgrading a TCABR Data Analysis and Acquisition System for Remote Participation Using Java, XML, RCP and Modern Client/Server Communication/Authentication

    Energy Technology Data Exchange (ETDEWEB)

    De Sa, W. [University of Sao Paulo - Institute of Physics - Plasma Physics Laboratory, Sao Paulo (Brazil)

    2009-07-01

    Each plasma physics laboratory has a proprietary scheme to control and data acquisition system. Usually, it is different from one laboratory to another. It means that each laboratory has its own way of control the experiment and retrieving data from the database. Fusion research relies to a great extent on international collaboration and it is difficult to follow the work remotely with private system. The TCABR data analysis and acquisition system has been upgraded to support a joint research programme using remote participation technologies. The architecture of the new system uses Java language as programming environment. Since application parameters and hardware in a joint experiment are very complex and with a large variability of components, requirement and specification solutions need to be flexible and modular, independent from operating system and computers architecture. To describe and to organize the information on all the components and the connections among them, systems are developed using the extensible Markup Language (XML) technology. The communication between clients and servers use Remote Procedure Call (RPC) based on the XML (RPC-XML technology). The integration among Java language, XML and RPC-XML technologies allows developing easily a standard data and communication access layer between users and laboratories using common software libraries and Web application. The libraries allow data retrieval using the same methods for all user laboratories in the joint collaboration and the Web application allows a simple Graphical User Interface (GUI) access. TCABR tokamak team collaborating with the CFN (Nuclear Fusion Center, Technical University of Lisbon) are implementing this Remote Participation technologies that are going to be tested at the Joint Experiment on TCABR (TCABR-JE), a Host Laboratory Experiment, organized in cooperation with the IAEA (International Atomic Energy Agency) in the framework of the IAEA Coordinated Research Project (CRP) on

  16. Autoshaping of key pecking in pigeons with negative reinforcement.

    Science.gov (United States)

    Rachlin, H

    1969-07-01

    Pigeons exposed to gradually increasing intensities of pulsing electric shock pecked a key and thereby reduced the intensity of shock to zero for 2 min. Acquisition of key pecking was brought about through an autoshaping process in which periodic brief keylight presentations immediately preceded automatic reduction of the shock. On the occasions of such automatic reduction of shock preceding the first measured key peck, little or no orientation to the key was observed. Observations of pigeons with autoshaping of positive reinforcement also revealed little evidence of orientation toward the key.

  17. P1-30: Axis Orientation Effects on Interaction between Color-Selective Symmetry Detectors

    Directory of Open Access Journals (Sweden)

    Chia-Ching Wu

    2012-10-01

    Full Text Available We used a noise masking paradigm to examine the interaction between color-selective symmetry detection mechanisms in the visual system. We used a 2AFC paradigm in which a random dot noise mask was presented in both intervals. One interval contained a target, while the other, a random dot control. The target consisted of a red and a green symmetric pattern with the same (both were 45° or −45° or orthogonal (one 45°and the other −45° orientation. The observers were to determine which interval contained the symmetric target. We measured the target density threshold at various noise densities. For all conditions, the target density threshold increased with noise density with a slope 0.96 on log-log coordinates. The threshold for the same-orientation condition was lower than that for the orthogonal condition at all noise densities. We fit our data with a divisive inhibition model for symmetry pattern detection (Chen & Tyler, 2010 PLOS One, in which the response of a symmetry detector is the excitation of a linear symmetry operator raised to a power and then divided by the divisive inhibition from all relevant symmetry operators. The best fit showed that the mutual inhibition between symmetry detectors in the same-orientation condition was only 13% of that in the orthogonal condition. Hence, instead of a strong same-orientation inhibition commonly observed in experiments using Gabor patches, it is actually easier for the visual system to integrate symmetric patterns of the same symmetric axis.

  18. KeyWare: an open wireless distributed computing environment

    Science.gov (United States)

    Shpantzer, Isaac; Schoenfeld, Larry; Grindahl, Merv; Kelman, Vladimir

    1995-12-01

    Deployment of distributed applications in the wireless domain lack equivalent tools, methodologies, architectures, and network management that exist in LAN based applications. A wireless distributed computing environment (KeyWareTM) based on intelligent agents within a multiple client multiple server scheme was developed to resolve this problem. KeyWare renders concurrent application services to wireline and wireless client nodes encapsulated in multiple paradigms such as message delivery, database access, e-mail, and file transfer. These services and paradigms are optimized to cope with temporal and spatial radio coverage, high latency, limited throughput and transmission costs. A unified network management paradigm for both wireless and wireline facilitates seamless extensions of LAN- based management tools to include wireless nodes. A set of object oriented tools and methodologies enables direct asynchronous invocation of agent-based services supplemented by tool-sets matched to supported KeyWare paradigms. The open architecture embodiment of KeyWare enables a wide selection of client node computing platforms, operating systems, transport protocols, radio modems and infrastructures while maintaining application portability.

  19. Version control of pathway models using XML patches.

    Science.gov (United States)

    Saffrey, Peter; Orton, Richard

    2009-03-17

    Computational modelling has become an important tool in understanding biological systems such as signalling pathways. With an increase in size complexity of models comes a need for techniques to manage model versions and their relationship to one another. Model version control for pathway models shares some of the features of software version control but has a number of differences that warrant a specific solution. We present a model version control method, along with a prototype implementation, based on XML patches. We show its application to the EGF/RAS/RAF pathway. Our method allows quick and convenient storage of a wide range of model variations and enables a thorough explanation of these variations. Trying to produce these results without such methods results in slow and cumbersome development that is prone to frustration and human error.

  20. XML Storage for Magnetotelluric Transfer Functions: Towards a Comprehensive Online Reference Database

    Science.gov (United States)

    Kelbert, A.; Blum, C.

    2015-12-01

    Magnetotelluric Transfer Functions (MT TFs) represent most of the information about Earth electrical conductivity found in the raw electromagnetic data, providing inputs for further inversion and interpretation. To be useful for scientific interpretation, they must also contain carefully recorded metadata. Making these data available in a discoverable and citable fashion would provide the most benefit to the scientific community, but such a development requires that the metadata is not only present in the file but is also searchable. The most commonly used MT TF format to date, the historical Society of Exploration Geophysicists Electromagnetic Data Interchange Standard 1987 (EDI), no longer supports some of the needs of modern magnetotellurics, most notably accurate error bars recording. Moreover, the inherent heterogeneity of EDI's and other historic MT TF formats has mostly kept the community away from healthy data sharing practices. Recently, the MT team at Oregon State University in collaboration with IRIS Data Management Center developed a new, XML-based format for MT transfer functions, and an online system for long-term storage, discovery and sharing of MT TF data worldwide (IRIS SPUD; www.iris.edu/spud/emtf). The system provides a query page where all of the MT transfer functions collected within the USArray MT experiment and other field campaigns can be searched for and downloaded; an automatic on-the-fly conversion to the historic EDI format is also included. To facilitate conversion to the new, more comprehensive and sustainable, XML format for MT TFs, and to streamline inclusion of historic data into the online database, we developed a set of open source format conversion tools, which can be used for rotation of MT TFs as well as a general XML EDI converter (https://seiscode.iris.washington.edu/projects/emtf-fcu). Here, we report on the newly established collaboration between the USGS Geomagnetism Program and the Oregon State University to gather and

  1. Orientation Encoding and Viewpoint Invariance in Face Recognition: Inferring Neural Properties from Large-Scale Signals.

    Science.gov (United States)

    Ramírez, Fernando M

    2018-05-01

    Viewpoint-invariant face recognition is thought to be subserved by a distributed network of occipitotemporal face-selective areas that, except for the human anterior temporal lobe, have been shown to also contain face-orientation information. This review begins by highlighting the importance of bilateral symmetry for viewpoint-invariant recognition and face-orientation perception. Then, monkey electrophysiological evidence is surveyed describing key tuning properties of face-selective neurons-including neurons bimodally tuned to mirror-symmetric face-views-followed by studies combining functional magnetic resonance imaging (fMRI) and multivariate pattern analyses to probe the representation of face-orientation and identity information in humans. Altogether, neuroimaging studies suggest that face-identity is gradually disentangled from face-orientation information along the ventral visual processing stream. The evidence seems to diverge, however, regarding the prevalent form of tuning of neural populations in human face-selective areas. In this context, caveats possibly leading to erroneous inferences regarding mirror-symmetric coding are exposed, including the need to distinguish angular from Euclidean distances when interpreting multivariate pattern analyses. On this basis, this review argues that evidence from the fusiform face area is best explained by a view-sensitive code reflecting head angular disparity, consistent with a role of this area in face-orientation perception. Finally, the importance is stressed of explicit models relating neural properties to large-scale signals.

  2. Managing and Querying Image Annotation and Markup in XML.

    Science.gov (United States)

    Wang, Fusheng; Pan, Tony; Sharma, Ashish; Saltz, Joel

    2010-01-01

    Proprietary approaches for representing annotations and image markup are serious barriers for researchers to share image data and knowledge. The Annotation and Image Markup (AIM) project is developing a standard based information model for image annotation and markup in health care and clinical trial environments. The complex hierarchical structures of AIM data model pose new challenges for managing such data in terms of performance and support of complex queries. In this paper, we present our work on managing AIM data through a native XML approach, and supporting complex image and annotation queries through native extension of XQuery language. Through integration with xService, AIM databases can now be conveniently shared through caGrid.

  3. Managing and Querying Image Annotation and Markup in XML

    Science.gov (United States)

    Wang, Fusheng; Pan, Tony; Sharma, Ashish; Saltz, Joel

    2010-01-01

    Proprietary approaches for representing annotations and image markup are serious barriers for researchers to share image data and knowledge. The Annotation and Image Markup (AIM) project is developing a standard based information model for image annotation and markup in health care and clinical trial environments. The complex hierarchical structures of AIM data model pose new challenges for managing such data in terms of performance and support of complex queries. In this paper, we present our work on managing AIM data through a native XML approach, and supporting complex image and annotation queries through native extension of XQuery language. Through integration with xService, AIM databases can now be conveniently shared through caGrid. PMID:21218167

  4. Evaluation of the kinematic structure of indicators key elements of sports equipment exercise by postural orientation movements

    Directory of Open Access Journals (Sweden)

    Y.V. Litvinenko

    2014-12-01

    Full Text Available Purpose : Examine the kinematic structure of indicators key elements of sports equipment exercise (difficult to coordinate. The method of postural orientation movements. Material : The study involved acrobats jumpers on the path of high qualification (n = 7. The method used video - computer recording the movements of the athlete. Results : Identified nodal elements of sports equipment double back somersault tuck. Exercise performed after rondat and double back flip and stretch after rondat - flick (coup ago. In the preparatory phase of motor actions acrobatic exercises isolated and studied central element of sports equipment - starting posture of the body; in the phase of the main motor action - animation poses of the body; in the final phase - the final body posture (stable landing. Conclusions : The method of video - computer registration allowed to perform a biomechanical analysis and evaluation of key elements of sports equipment double back somersault tuck and a double back flip and stretch. Also gain new knowledge about the mechanism of the phase structure of movements when performing double somersaults.

  5. XSAMS: XML Schema for Atoms, Molecules and Solids. Summary report of an IAEA Consultants' Meeting

    Energy Technology Data Exchange (ETDEWEB)

    Braams, B J [International Atomic Energy Agency, Vienna (Austria)

    2010-05-15

    Experts on atomic and molecular data and their exchange met at National Institute for Fusion Science, Toki-City, Japan, to review progress in the implementation of XSAMS, the XML Schema for Atoms, Molecules and Solids, and to discuss further development of the Schema. The proceedings of the meeting are summarized here. (author)

  6. XSAMS: XML Schema for Atoms, Molecules and Solids. Summary report of an IAEA Consultants' Meeting

    International Nuclear Information System (INIS)

    Braams, B.J.

    2010-05-01

    Experts on atomic and molecular data and their exchange met at National Institute for Fusion Science, Toki-City, Japan, to review progress in the implementation of XSAMS, the XML Schema for Atoms, Molecules and Solids, and to discuss further development of the Schema. The proceedings of the meeting are summarized here. (author)

  7. Post-Hoc Pattern-Oriented Testing and Tuning of an Existing Large Model: Lessons from the Field Vole

    DEFF Research Database (Denmark)

    Topping, Christopher John; Dalkvist, Trine; Grimm, Volker

    2012-01-01

    Pattern-oriented modeling (POM) is a general strategy for modeling complex systems. In POM, multiple patterns observed at different scales and hierarchical levels are used to optimize model structure, to test and select sub-models of key processes, and for calibration. So far, POM has been used f...

  8. HepML, an XML-based format for describing simulated data in high energy physics

    Science.gov (United States)

    Belov, S.; Dudko, L.; Kekelidze, D.; Sherstnev, A.

    2010-10-01

    In this paper we describe a HepML format and a corresponding C++ library developed for keeping complete description of parton level events in a unified and flexible form. HepML tags contain enough information to understand what kind of physics the simulated events describe and how the events have been prepared. A HepML block can be included into event files in the LHEF format. The structure of the HepML block is described by means of several XML Schemas. The Schemas define necessary information for the HepML block and how this information should be located within the block. The library libhepml is a C++ library intended for parsing and serialization of HepML tags, and representing the HepML block in computer memory. The library is an API for external software. For example, Matrix Element Monte Carlo event generators can use the library for preparing and writing a header of an LHEF file in the form of HepML tags. In turn, Showering and Hadronization event generators can parse the HepML header and get the information in the form of C++ classes. libhepml can be used in C++, C, and Fortran programs. All necessary parts of HepML have been prepared and we present the project to the HEP community. Program summaryProgram title: libhepml Catalogue identifier: AEGL_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AEGL_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU GPLv3 No. of lines in distributed program, including test data, etc.: 138 866 No. of bytes in distributed program, including test data, etc.: 613 122 Distribution format: tar.gz Programming language: C++, C Computer: PCs and workstations Operating system: Scientific Linux CERN 4/5, Ubuntu 9.10 RAM: 1 073 741 824 bytes (1 Gb) Classification: 6.2, 11.1, 11.2 External routines: Xerces XML library ( http://xerces.apache.org/xerces-c/), Expat XML Parser ( http://expat.sourceforge.net/) Nature of problem: Monte Carlo simulation in high

  9. Applying XML-Based Technologies to Developing Online Courses: The Case of a Prototype Learning Environment

    Science.gov (United States)

    Jedrzejowicz, Joanna; Neumann, Jakub

    2007-01-01

    Purpose: This paper seeks to describe XML technologies and to show how they can be applied for developing web-based courses and supporting authors who do not have much experience with the preparation of web-based courses. Design/methodology/approach: When developing online courses the academic staff has to address the following problem--how to…

  10. The importance of a servant leader orientation.

    Science.gov (United States)

    Jenkins, Marjorie; Stewart, Alice C

    2010-01-01

    Ensuring a quality nursing workforce for the future in a time of increasing labor shortage and declining nurse satisfaction is a key challenge to the health care industry. Understanding what impacts job satisfaction is vital to solving the problem of nurse attrition. We suggest that the approach to supporting staff in the care giving role requires additional expectations of managers who supervise inpatient nursing staff. This study empirically tested the impact of nurse managers' servant leadership orientation on nurse job satisfaction. Nurses providing direct bedside patient care within inpatient departments of a five-hospital system were asked to respond to four questionnaires. Seventeen departments participated. There were 346 available nurses across the departments. The average response rate was 73% across all of the units surveyed. Hypotheses were tested using multivariate regression analysis of the nurse-nurse manager dyad. Statistical findings of this study provided evidence that behaviors and attitudes of the nurse manager do impact employee job satisfaction. Departments where staff perceived that managers had higher servant leadership orientation demonstrated significant positive impact on individual employee job satisfaction. Nursing is a unique occupation in that it requires both competence in professional service and compassion in patient caregiving. Hospitals are not factories dealing with inanimate objects or data. The results of this research suggested that the management approach in a health care environment might be enhanced by a more servant-oriented management approach. Specific policy changes that may be implied on the basis of findings of this research include key areas of management selection, management development, and management reward/evaluation.

  11. Illicit drug use and harms, and related interventions and policy in Canada: A narrative review of select key indicators and developments since 2000.

    Science.gov (United States)

    Fischer, Benedikt; Murphy, Yoko; Rudzinski, Katherine; MacPherson, Donald

    2016-01-01

    By the year 2000, Canada faced high levels of illicit drug use and related harms. Simultaneously, a fundamental tension had raisen between continuing a mainly repression-based versus shifting to a more health-oriented drug policy approach. Despite a wealth of new data and numerous individual studies that have emerged since then, no comprehensive review of key indicators and developments of illicit drug use/harm epidemiology, interventions and law/policy exist; this paper seeks to fill this gap. We searched and reviewed journal publications, as well as key reports, government publications, surveys, etc. reporting on data and information since 2000. Relevant data were selected and extracted for review inclusion, and subsequently grouped and narratively summarized in major topical sub-theme categories. Cannabis use has remained the principal form of illicit drug use; prescription opioid misuse has arisen as a new and extensive phenomenon. While new drug-related blood-borne-virus transmissions declined, overdose deaths increased in recent years. Acceptance and proliferation of - mainly local/community-based - health measures (e.g., needle exchange, crack paraphernalia or naloxone distribution) aiming at high-risk drug users has evolved, though reach and access limitations have persisted; Vancouver's 'supervised injection site' has attracted continued attention yet remains un-replicated elsewhere in Canada. While opioid maintenance treatment utilization increased, access to treatment for key (e.g., infectious disease, psychiatric) co-morbidities among drug users remained limited. Law enforcement continued to principally focus on cannabis and specifically cannabis users. 'Drug treatment courts' were introduced but have shown limited effectiveness; several attempts cannabis control law reform have failed, except for the recent establishment of 'medical cannabis' access provisions. While recent federal governments introduced several law and policy measures reinforcing a

  12. XPath Node Selection over Grammar-Compressed Trees

    Directory of Open Access Journals (Sweden)

    Sebastian Maneth

    2013-11-01

    Full Text Available XML document markup is highly repetitive and therefore well compressible using grammar-based compression. Downward, navigational XPath can be executed over grammar-compressed trees in PTIME: the query is translated into an automaton which is executed in one pass over the grammar. This result is well-known and has been mentioned before. Here we present precise bounds on the time complexity of this problem, in terms of big-O notation. For a given grammar and XPath query, we consider three different tasks: (1 to count the number of nodes selected by the query, (2 to materialize the pre-order numbers of the selected nodes, and (3 to serialize the subtrees at the selected nodes.

  13. Encoding of coordination complexes with XML.

    Science.gov (United States)

    Vinoth, P; Sankar, P

    2017-09-01

    An in-silico system to encode structure, bonding and properties of coordination complexes is developed. The encoding is achieved through a semantic XML markup frame. Composition of the coordination complexes is captured in terms of central atom and ligands. Structural information of central atom is detailed in terms of electron status of valence electron orbitals. The ligands are encoded with specific reference to the electron environment of ligand centre atoms. Behaviour of ligands to form low or high spin complexes is accomplished by assigning a Ligand Centre Value to every ligand based on the electronic environment of ligand centre atom. Chemical ontologies are used for categorization purpose and to control different hybridization schemes. Complexes formed by the central atoms of transition metal, non-transition elements belonging to s-block, p-block and f-block are encoded with a generic encoding platform. Complexes of homoleptic, heteroleptic and bridged types are also covered by this encoding system. Utility of the encoded system to predict redox electron transfer reaction in the coordination complexes is demonstrated with a simple application. Copyright © 2017 Elsevier Inc. All rights reserved.

  14. An XML Approach of Coding a Morphological Database for Arabic Language

    Directory of Open Access Journals (Sweden)

    Mourad Gridach

    2011-01-01

    Full Text Available We present an XML approach for the production of an Arabic morphological database for Arabic language that will be used in morphological analysis for modern standard Arabic (MSA. Optimizing the production, maintenance, and extension of morphological database is one of the crucial aspects impacting natural language processing (NLP. For Arabic language, producing a morphological database is not an easy task, because this it has some particularities such as the phenomena of agglutination and a lot of morphological ambiguity phenomenon. The method presented can be exploited by NLP applications such as syntactic analysis, semantic analysis, information retrieval, and orthographical correction.

  15. Suggestions on selection of clay site as a key alternative of underground repository for HLW geological disposal in China

    International Nuclear Information System (INIS)

    Zheng Hualing; Fu Bingjun; Fan Xianhua; Chen Shi; Sun Donghui

    2006-01-01

    Site selection for the underground repository is a vital problem with respect to the HLW geological disposal. Over the past decades, we have been focusing our attention on granite as a priority in China. However, there are some problems have to be discussed on this matter. In this paper, both experiences gained and lessons learned in the international community regarding the site selection are described. And then, after analyzing a lot of some key factors affecting the site selection, some comments and suggestions on selection of clay site as a key alternative before final decision making in China are presented. (authors)

  16. Autoshaping of key pecking in pigeons with negative reinforcement1

    Science.gov (United States)

    Rachlin, Howard

    1969-01-01

    Pigeons exposed to gradually increasing intensities of pulsing electric shock pecked a key and thereby reduced the intensity of shock to zero for 2 min. Acquisition of key pecking was brought about through an autoshaping process in which periodic brief keylight presentations immediately preceded automatic reduction of the shock. On the occasions of such automatic reduction of shock preceding the first measured key peck, little or no orientation to the key was observed. Observations of pigeons with autoshaping of positive reinforcement also revealed little evidence of orientation toward the key. ImagesFig. 3.Fig. 4. PMID:16811371

  17. Comparing FrameMaker and Quicksilver as Tools for Producing Single Sourced Content from XML

    OpenAIRE

    HUHTAMÄKI, HENRI

    2006-01-01

    Tutkimuksen tarkoituksena on vertailla kahta yleisesti teknisen dokumentaation tuottamiseen tarkoittettua ohjelmaa yksilähteistämisen näkökulmasta, kun lähdemateriaali on XML-muodossa: Adobe FrameMakeria ja Broadvision Quicksilveriä. Tarkoituksena on antaa teknisille kirjoittajille ja tekniseen viestintään erikoistuneille yrityksille tarpeeksi tietoa, jotta he osaisivat valita oikean työkalun omiin tarkoitusperiinsä. Työkalut testataan tutkimuskentän rajoittamiseksi sellaisina kokonaisuuksina...

  18. Key-lock colloids in a nematic liquid crystal.

    Science.gov (United States)

    Silvestre, Nuno M; Tasinkevych, M

    2017-01-01

    The Landau-de Gennes free energy is used to study theoretically the effective interaction of spherical "key" and anisotropic "lock" colloidal particles. We assume identical anchoring properties of the surfaces of the key and of the lock particles, and we consider planar degenerate and perpendicular anchoring conditions separately. The lock particle is modeled as a spherical particle with a spherical dimple. When such a particle is introduced into a nematic liquid crystal, it orients its dimple at an oblique angle θ_{eq} with respect to the far field director n_{∞}. This angle depends on the depth of the dimple. Minimization results show that the free energy of a pair of key and lock particles exhibits a global minimum for the configuration when the key particle is facing the dimple of the lock colloidal particle. The preferred orientation ϕ_{eq} of the key-lock composite doublet relative to n_{∞} is robust against thermal fluctuations. The preferred orientation θ_{eq}^{(2)} of the dimple particle in the doublet is different from the isolated situation. This is related to the "direct" interaction of defects accompanying the key particle with the edge of the dimple. We propose that this nematic-amplified key-lock interaction can play an important role in self-organization and clustering of mixtures of colloidal particles with dimple colloids present.

  19. Analysis of the β→α variant selection in a Zy-4 rod by means of specific crystal orientation maps

    International Nuclear Information System (INIS)

    Gey, N.; Humbert, M.; Gautier, E.; Bechade, J.L.

    2002-01-01

    A specific analysis of the α inherited crystal orientation map (COM) is proposed to study the β→α texture inheritance of a Zy-4 rod. In particular, it is shown that the α colonies inherited from each parent grain can systematically be identified on the α Map by considering the misorientations between pixels. Once identified, the orientations of these colonies are used to calculate the orientation of their common β grain. Finally, the orientation data of the parent phase can also be displayed as a COM. The β COM shows that at high temperature, the β grains were mainly oriented around the left angle 111 right angle //AD fibre. Moreover, the analysis of the parent and the inherited COM, makes clear that each β grain has preferentially transformed into different variants belonging each to the left angle 11.0 right angle //AD fibre. This variant selection is responsible for the sharp α texture of the Zy-4 rod after a treatment in the β field. (orig.)

  20. Use of XML and Java for collaborative petroleum reservoir modeling on the Internet

    Science.gov (United States)

    Victorine, J.; Watney, W.L.; Bhattacharya, S.

    2005-01-01

    The GEMINI (Geo-Engineering Modeling through INternet Informatics) is a public-domain, web-based freeware that is made up of an integrated suite of 14 Java-based software tools to accomplish on-line, real-time geologic and engineering reservoir modeling. GEMINI facilitates distant collaborations for small company and academic clients, negotiating analyses of both single and multiple wells. The system operates on a single server and an enterprise database. External data sets must be uploaded into this database. Feedback from GEMINI users provided the impetus to develop Stand Alone Web Start Applications of GEMINI modules that reside in and operate from the user's PC. In this version, the GEMINI modules run as applets, which may reside in local user PCs, on the server, or Java Web Start. In this enhanced version, XML-based data handling procedures are used to access data from remote and local databases and save results for later access and analyses. The XML data handling process also integrates different stand-alone GEMINI modules enabling the user(s) to access multiple databases. It provides flexibility to the user to customize analytical approach, database location, and level of collaboration. An example integrated field-study using GEMINI modules and Stand Alone Web Start Applications is provided to demonstrate the versatile applicability of this freeware for cost-effective reservoir modeling. ?? 2005 Elsevier Ltd. All rights reserved.

  1. LRRML: a conformational database and an XML description of leucine-rich repeats (LRRs).

    Science.gov (United States)

    Wei, Tiandi; Gong, Jing; Jamitzky, Ferdinand; Heckl, Wolfgang M; Stark, Robert W; Rössle, Shaila C

    2008-11-05

    Leucine-rich repeats (LRRs) are present in more than 6000 proteins. They are found in organisms ranging from viruses to eukaryotes and play an important role in protein-ligand interactions. To date, more than one hundred crystal structures of LRR containing proteins have been determined. This knowledge has increased our ability to use the crystal structures as templates to model LRR proteins with unknown structures. Since the individual three-dimensional LRR structures are not directly available from the established databases and since there are only a few detailed annotations for them, a conformational LRR database useful for homology modeling of LRR proteins is desirable. We developed LRRML, a conformational database and an extensible markup language (XML) description of LRRs. The release 0.2 contains 1261 individual LRR structures, which were identified from 112 PDB structures and annotated manually. An XML structure was defined to exchange and store the LRRs. LRRML provides a source for homology modeling and structural analysis of LRR proteins. In order to demonstrate the capabilities of the database we modeled the mouse Toll-like receptor 3 (TLR3) by multiple templates homology modeling and compared the result with the crystal structure. LRRML is an information source for investigators involved in both theoretical and applied research on LRR proteins. It is available at http://zeus.krist.geo.uni-muenchen.de/~lrrml.

  2. LRRML: a conformational database and an XML description of leucine-rich repeats (LRRs

    Directory of Open Access Journals (Sweden)

    Stark Robert W

    2008-11-01

    Full Text Available Abstract Background Leucine-rich repeats (LRRs are present in more than 6000 proteins. They are found in organisms ranging from viruses to eukaryotes and play an important role in protein-ligand interactions. To date, more than one hundred crystal structures of LRR containing proteins have been determined. This knowledge has increased our ability to use the crystal structures as templates to model LRR proteins with unknown structures. Since the individual three-dimensional LRR structures are not directly available from the established databases and since there are only a few detailed annotations for them, a conformational LRR database useful for homology modeling of LRR proteins is desirable. Description We developed LRRML, a conformational database and an extensible markup language (XML description of LRRs. The release 0.2 contains 1261 individual LRR structures, which were identified from 112 PDB structures and annotated manually. An XML structure was defined to exchange and store the LRRs. LRRML provides a source for homology modeling and structural analysis of LRR proteins. In order to demonstrate the capabilities of the database we modeled the mouse Toll-like receptor 3 (TLR3 by multiple templates homology modeling and compared the result with the crystal structure. Conclusion LRRML is an information source for investigators involved in both theoretical and applied research on LRR proteins. It is available at http://zeus.krist.geo.uni-muenchen.de/~lrrml.

  3. Top-down inputs enhance orientation selectivity in neurons of the primary visual cortex during perceptual learning.

    Directory of Open Access Journals (Sweden)

    Samat Moldakarimov

    2014-08-01

    Full Text Available Perceptual learning has been used to probe the mechanisms of cortical plasticity in the adult brain. Feedback projections are ubiquitous in the cortex, but little is known about their role in cortical plasticity. Here we explore the hypothesis that learning visual orientation discrimination involves learning-dependent plasticity of top-down feedback inputs from higher cortical areas, serving a different function from plasticity due to changes in recurrent connections within a cortical area. In a Hodgkin-Huxley-based spiking neural network model of visual cortex, we show that modulation of feedback inputs to V1 from higher cortical areas results in shunting inhibition in V1 neurons, which changes the response properties of V1 neurons. The orientation selectivity of V1 neurons is enhanced without changing orientation preference, preserving the topographic organizations in V1. These results provide new insights to the mechanisms of plasticity in the adult brain, reconciling apparently inconsistent experiments and providing a new hypothesis for a functional role of the feedback connections.

  4. Bit-Oriented Quantum Public-Key Cryptosystem Based on Bell States

    Science.gov (United States)

    Wu, WanQing; Cai, QingYu; Zhang, HuanGuo; Liang, XiaoYan

    2018-06-01

    Quantum public key encryption system provides information confidentiality using quantum mechanics. This paper presents a quantum public key cryptosystem ( Q P K C) based on the Bell states. By H o l e v o' s theorem, the presented scheme provides the security of the secret key using one-wayness during the QPKC. While the QPKC scheme is information theoretic security under chosen plaintext attack ( C P A). Finally some important features of presented QPKC scheme can be compared with other QPKC scheme.

  5. Selection system orientations as an explanation for the differences between dual leaders of the same organization in their perception of organizational performance

    NARCIS (Netherlands)

    P.V. Bhansing (Pawan); M.A.A.M. Leenders (Mark); N.M. Wijnberg (Nachoem)

    2016-01-01

    textabstractWe investigate to what extent individual managers operating in a dual leadership structure have different perceptions of how well his/her organization is performing. Using selection system theory we develop hypotheses on the relationships between a leader’s selection system orientation

  6. ART-ML - a novel XML format for the biological procedures modeling and the representation of blood flow simulation.

    Science.gov (United States)

    Karvounis, E C; Tsakanikas, V D; Fotiou, E; Fotiadis, D I

    2010-01-01

    The paper proposes a novel Extensible Markup Language (XML) based format called ART-ML that aims at supporting the interoperability and the reuse of models of blood flow, mass transport and plaque formation, exported by ARTool. ARTool is a platform for the automatic processing of various image modalities of coronary and carotid arteries. The images and their content are fused to develop morphological models of the arteries in easy to handle 3D representations. The platform incorporates efficient algorithms which are able to perform blood flow simulation. In addition atherosclerotic plaque development is estimated taking into account morphological, flow and genetic factors. ART-ML provides a XML format that enables the representation and management of embedded models within the ARTool platform and the storage and interchange of well-defined information. This approach influences in the model creation, model exchange, model reuse and result evaluation.

  7. Strategic Orientation of SMEs: Empirical Research

    Directory of Open Access Journals (Sweden)

    Jelena Minović

    2016-04-01

    Full Text Available The main objective of the paper is to identify the sources of competitive advantage of small and medium-sized enterprises in Serbia. Gaining a competitive advantage is the key priority of market-oriented enterprises regardless of their size and sector. Since business environment in Serbia is not stimulating enough for enterprises’ growth and development, the paper highlights the role of strategic orientation in business promotion and development. In order to identify the sources of competitive advantage, the empirical research is conducted by using the survey method. The research sample is created by using a selective approach, namely, the sample includes enterprises with more than ten employees, and enterprises identified to have the potential for growth and development. The research results indicate that small and medium-sized enterprises in Serbia are generally focused on costs as a source of competitive advantage, i.e., they gain competitive advantage in a selected market segment by offering low price and average quality products/services. In addition, the results of the research point out that the Serbian small and medium-sized enterprises are innovation-oriented. Organizations qualifying as middle-sized enterprises are predominantly focused on process innovations, while small businesses are primarily oriented towards product innovations. One of the limitations of the research refers to the small presence of the research sample within the category of middle-sized enterprises. The smaller sample presence than it was previously planned is mostly due to the lack of managers’ willingness to participate in the research, as well as to the fact that these enterprises account for the smaller share in the total number of enterprises in the small-and medium-sized enterprises’ sector. Taking into account that the sector of small and medium-sized enterprises generates around 30% of the country’s GDP, we consider the research results to be

  8. QuakeML: XML for Seismological Data Exchange and Resource Metadata Description

    Science.gov (United States)

    Euchner, F.; Schorlemmer, D.; Becker, J.; Heinloo, A.; Kästli, P.; Saul, J.; Weber, B.; QuakeML Working Group

    2007-12-01

    QuakeML is an XML-based data exchange format for seismology that is under development. Current collaborators are from ETH, GFZ, USC, USGS, IRIS DMC, EMSC, ORFEUS, and ISTI. QuakeML development was motivated by the lack of a widely accepted and well-documented data format that is applicable to a broad range of fields in seismology. The development team brings together expertise from communities dealing with analysis and creation of earthquake catalogs, distribution of seismic bulletins, and real-time processing of seismic data. Efforts to merge QuakeML with existing XML dialects are under way. The first release of QuakeML will cover a basic description of seismic events including picks, arrivals, amplitudes, magnitudes, origins, focal mechanisms, and moment tensors. Further extensions are in progress or planned, e.g., for macroseismic information, location probability density functions, slip distributions, and ground motion information. The QuakeML language definition is supplemented by a concept to provide resource metadata and facilitate metadata exchange between distributed data providers. For that purpose, we introduce unique, location-independent identifiers of seismological resources. As an application of QuakeML, ETH Zurich currently develops a Python-based seismicity analysis toolkit as a contribution to CSEP (Collaboratory for the Study of Earthquake Predictability). We follow a collaborative and transparent development approach along the lines of the procedures of the World Wide Web Consortium (W3C). QuakeML currently is in working draft status. The standard description will be subjected to a public Request for Comments (RFC) process and eventually reach the status of a recommendation. QuakeML can be found at http://www.quakeml.org.

  9. Anxiety-related biases in visual orienting and spatial motor response selection independently assessed by a probe-classification task

    NARCIS (Netherlands)

    Schrooten, M.G.S.; Smulders, F.T.Y.; Mogg, K.; Bradley, B.P.

    2012-01-01

    This dot-probe study assessed anxiety-related biases in visual attentional orienting and spatial motor response selection (motor attention) in high- and low-trait-anxious adults, and whether anxiety-related biases depend on response speed. Emotional-neutral word pairs appeared for 14 or 500 ms, with

  10. Poster — Thur Eve — 55: An automated XML technique for isocentre verification on the Varian TrueBeam

    International Nuclear Information System (INIS)

    Asiev, Krum; Mullins, Joel; DeBlois, François; Liang, Liheng; Syme, Alasdair

    2014-01-01

    Isocentre verification tests, such as the Winston-Lutz (WL) test, have gained popularity in the recent years as techniques such as stereotactic radiosurgery/radiotherapy (SRS/SRT) treatments are more commonly performed on radiotherapy linacs. These highly conformal treatments require frequent monitoring of the geometrical accuracy of the isocentre to ensure proper radiation delivery. At our clinic, the WL test is performed by acquiring with the EPID a collection of 8 images of a WL phantom fixed on the couch for various couch/gantry angles. This set of images is later analyzed to determine the isocentre size. The current work addresses the acquisition process. A manual WL test acquisition performed by and experienced physicist takes in average 25 minutes and is prone to user manipulation errors. We have automated this acquisition on a Varian TrueBeam STx linac (Varian, Palo Alto, USA). The Varian developer mode allows the execution of custom-made XML script files to control all aspects of the linac operation. We have created an XML-WL script that cycles through each couch/gantry combinations taking an EPID image at each position. This automated acquisition is done in less than 4 minutes. The reproducibility of the method was verified by repeating the execution of the XML file 5 times. The analysis of the images showed variation of the isocenter size less than 0.1 mm along the X, Y and Z axes and compares favorably to a manual acquisition for which we typically observe variations up to 0.5 mm

  11. Using Web Services and XML Harvesting to Achieve a Dynamic Web Site. Computers in Small Libraries

    Science.gov (United States)

    Roberts, Gary

    2005-01-01

    Exploiting and contextualizing free information is a natural part of library culture. In this column, Gary Roberts, the information systems and reference librarian at Herrick Library, Alfred University in Alfred, NY, describes how to use XML content on a Web site to link to hundreds of free and useful resources. He gives a general overview of the…

  12. Attentional Selection of Feature Conjunctions Is Accomplished by Parallel and Independent Selection of Single Features.

    Science.gov (United States)

    Andersen, Søren K; Müller, Matthias M; Hillyard, Steven A

    2015-07-08

    Experiments that study feature-based attention have often examined situations in which selection is based on a single feature (e.g., the color red). However, in more complex situations relevant stimuli may not be set apart from other stimuli by a single defining property but by a specific combination of features. Here, we examined sustained attentional selection of stimuli defined by conjunctions of color and orientation. Human observers attended to one out of four concurrently presented superimposed fields of randomly moving horizontal or vertical bars of red or blue color to detect brief intervals of coherent motion. Selective stimulus processing in early visual cortex was assessed by recordings of steady-state visual evoked potentials (SSVEPs) elicited by each of the flickering fields of stimuli. We directly contrasted attentional selection of single features and feature conjunctions and found that SSVEP amplitudes on conditions in which selection was based on a single feature only (color or orientation) exactly predicted the magnitude of attentional enhancement of SSVEPs when attending to a conjunction of both features. Furthermore, enhanced SSVEP amplitudes elicited by attended stimuli were accompanied by equivalent reductions of SSVEP amplitudes elicited by unattended stimuli in all cases. We conclude that attentional selection of a feature-conjunction stimulus is accomplished by the parallel and independent facilitation of its constituent feature dimensions in early visual cortex. The ability to perceive the world is limited by the brain's processing capacity. Attention affords adaptive behavior by selectively prioritizing processing of relevant stimuli based on their features (location, color, orientation, etc.). We found that attentional mechanisms for selection of different features belonging to the same object operate independently and in parallel: concurrent attentional selection of two stimulus features is simply the sum of attending to each of those

  13. Selection system orientations as an explanation for the differences between dual leaders of the same organization in their perception of organizational performance

    NARCIS (Netherlands)

    Bhansing, P.V.; Leenders, M.A.A.M.; Wijnberg, N.M.

    2016-01-01

    We investigate to what extent individual managers operating in a dual leadership structure have different perceptions of how well his/her organization is performing. Using selection system theory we develop hypotheses on the relationships between a leader’s selection system orientation and his/her

  14. Service-oriented architecture of adaptive, intelligent data acquisition and processing systems for long-pulse fusion experiments

    International Nuclear Information System (INIS)

    Gonzalez, J.; Ruiz, M.; Barrera, E.; Lopez, J.M.; Arcas, G. de; Vega, J.

    2010-01-01

    The data acquisition systems used in long-pulse fusion experiments need to implement data reduction and pattern recognition algorithms in real time. In order to accomplish these operations, it is essential to employ software tools that allow for hot swap capabilities throughout the temporal evolution of the experiments. This is very important because processing needs are not equal during different phases of the experiment. The intelligent test and measurement system (ITMS) developed by UPM and CIEMAT is an example of a technology for implementing scalable data acquisition and processing systems based on PXI and CompactPCI hardware. In the ITMS platform, a set of software tools allows the user to define the processing algorithms associated with the different experimental phases using state machines driven by software events. These state machines are specified using the State Chart XML (SCXML) language. The software tools are developed using JAVA, JINI, an SCXML engine and several LabVIEW applications. Within this schema, it is possible to execute data acquisition and processing applications in an adaptive way. The power of SCXML semantics and the ability to work with XML user-defined data types allow for very easy programming of the ITMS platform. With this approach, the ITMS platform is a suitable solution for implementing scalable data acquisition and processing systems based on a service-oriented model with the ability to easily implement remote participation applications.

  15. Service-oriented architecture of adaptive, intelligent data acquisition and processing systems for long-pulse fusion experiments

    Energy Technology Data Exchange (ETDEWEB)

    Gonzalez, J. [Grupo de Investigacion en Instrumentacion y Acustica Aplicada. Universidad Politecnica de Madrid, Crta. Valencia Km-7 Madrid 28031 (Spain); Ruiz, M., E-mail: mariano.ruiz@upm.e [Grupo de Investigacion en Instrumentacion y Acustica Aplicada. Universidad Politecnica de Madrid, Crta. Valencia Km-7 Madrid 28031 (Spain); Barrera, E.; Lopez, J.M.; Arcas, G. de [Grupo de Investigacion en Instrumentacion y Acustica Aplicada. Universidad Politecnica de Madrid, Crta. Valencia Km-7 Madrid 28031 (Spain); Vega, J. [Asociacion EURATOM/CIEMAT para Fusion, Madrid (Spain)

    2010-07-15

    The data acquisition systems used in long-pulse fusion experiments need to implement data reduction and pattern recognition algorithms in real time. In order to accomplish these operations, it is essential to employ software tools that allow for hot swap capabilities throughout the temporal evolution of the experiments. This is very important because processing needs are not equal during different phases of the experiment. The intelligent test and measurement system (ITMS) developed by UPM and CIEMAT is an example of a technology for implementing scalable data acquisition and processing systems based on PXI and CompactPCI hardware. In the ITMS platform, a set of software tools allows the user to define the processing algorithms associated with the different experimental phases using state machines driven by software events. These state machines are specified using the State Chart XML (SCXML) language. The software tools are developed using JAVA, JINI, an SCXML engine and several LabVIEW applications. Within this schema, it is possible to execute data acquisition and processing applications in an adaptive way. The power of SCXML semantics and the ability to work with XML user-defined data types allow for very easy programming of the ITMS platform. With this approach, the ITMS platform is a suitable solution for implementing scalable data acquisition and processing systems based on a service-oriented model with the ability to easily implement remote participation applications.

  16. Quality-Oriented Classification of Aircraft Material Based on SVM

    Directory of Open Access Journals (Sweden)

    Hongxia Cai

    2014-01-01

    Full Text Available The existing material classification is proposed to improve the inventory management. However, different materials have the different quality-related attributes, especially in the aircraft industry. In order to reduce the cost without sacrificing the quality, we propose a quality-oriented material classification system considering the material quality character, Quality cost, and Quality influence. Analytic Hierarchy Process helps to make feature selection and classification decision. We use the improved Kraljic Portfolio Matrix to establish the three-dimensional classification model. The aircraft materials can be divided into eight types, including general type, key type, risk type, and leveraged type. Aiming to improve the classification accuracy of various materials, the algorithm of Support Vector Machine is introduced. Finally, we compare the SVM and BP neural network in the application. The results prove that the SVM algorithm is more efficient and accurate and the quality-oriented material classification is valuable.

  17. Integrated care: wellness-oriented peer approaches: a key ingredient for integrated care.

    Science.gov (United States)

    Swarbrick, Margaret A

    2013-08-01

    People with lived experience of mental illness have become leaders of an influential movement to help the mental health system embrace the notion of whole health and wellness in the areas of advocacy, policy, and care delivery. Wellness-oriented peer approaches delivered by peer-support whole-health specialists and wellness coaches can play an important role in integrated care models. This column examines the wellness definitions and peer models and some specific benefits and tensions between the peer-oriented wellness approach and the medical model. These models can work in unison to improve health and wellness among people with mental and substance use disorders.

  18. Object-Oriented Type Systems

    DEFF Research Database (Denmark)

    Schwartzbach, Michael Ignatieff; Palsberg, Jens

    a type system that generalizes and explains them. The theory is based on an idealized object-oriented language called BOPL (Basic Object Programming Language), containing common features of the above languages. A type system, type inference algorithm, and typings of inheritance and genericity......Object-Oriented Type Systems Jens Palsberg and Michael I. Schwartzbach Aarhus University, Denmark Type systems are required to ensure reliability and efficiency of software. For object-oriented languages, typing is an especially challenging problem because of inheritance, assignment, and late...... are provided for BOPL. Throughout, the results are related to the languages on which BOPL is based. This text offers advanced undergraduates and professional software developers a sound understanding of the key aspects of object-oriented type systems. All algorithms are implemented in a freely available...

  19. An Evaluation of Media-Oriented Rate Selection Algorithm for Multimedia Transmission in MANETs

    Directory of Open Access Journals (Sweden)

    Guionnet Thomas

    2005-01-01

    Full Text Available We focus on the optimization of real-time multimedia transmission over 802.11-based ad hoc networks. In particular, we propose a simple and efficient cross-layer mechanism that considers both the channel conditions and characteristics of the media for dynamically selecting the transmission mode. This mechanism called media-oriented rate selection algorithm (MORSA targets loss-tolerant applications such as VoD that do not require full reliable transmission. We provide an evaluation of this mechanism for MANETs using simulations with NS and analyze the video quality obtained with a fine-grain scalable video encoder based on a motion-compensated spatiotemporal wavelet transform. Our results show that MORSA achieves up to 4 Mbps increase in throughput and that the routing overhead decreases significantly. Transmission of a sample video flow over an 802.11a wireless channel has been evaluated with MORSA. Important improvement is observed in throughput, latency, and jitter while keeping a good level of video quality.

  20. Field-free orientation of molecules

    DEFF Research Database (Denmark)

    Machholm, Mette; Henriksen, Niels Engholm

    2001-01-01

    The excitation of angular motion, in particular, the creation of a wave packet in the angular degrees of freedom via short-pulse, off-resonant excitation with respect to rotational transitions, was examined. The key result was that field-free time-dependent orientation for a molecule like LiH can...... be generated after the turn-off of a state-of-the-art electromagnetic half-cycle pulse.......The excitation of angular motion, in particular, the creation of a wave packet in the angular degrees of freedom via short-pulse, off-resonant excitation with respect to rotational transitions, was examined. The key result was that field-free time-dependent orientation for a molecule like LiH can...