CRED REA Coral Population Parameters at Rose Atoll, American Samoa, 2004

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 2 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 12 sites at Rose Atoll in American...

CRED REA Coral Population Paramaters at Rose Atoll, American Samoa, 2006

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 1 or 2 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 11 sites at Rose Atoll in...

Human impacts on large benthic foraminifers near a densely populated area of Majuro Atoll, Marshall Islands

International Nuclear Information System (INIS)

Osawa, Yoko; Fujita, Kazuhiko; Umezawa, Yu; Kayanne, Hajime; Ide, Yoichi; Nagaoka, Tatsutoshi; Miyajima, Toshihiro; Yamano, Hiroya

2010-01-01

Human impacts on sand-producing, large benthic foraminifers were investigated on ocean reef flats at the northeast Majuro Atoll, Marshall Islands, along a human population gradient. The densities of dominant foraminifers Calcarina and Amphistegina declined with distance from densely populated islands. Macrophyte composition on ocean reef flats differed between locations near sparsely or densely populated islands. Nutrient concentrations in reef-flat seawater and groundwater were high near or on densely populated islands. δ 15 N values in macroalgal tissues indicated that macroalgae in nearshore lagoons assimilate wastewater-derived nitrogen, whereas those on nearshore ocean reef flats assimilate nitrogen from other sources. These results suggest that increases in the human population result in high nutrient loading in groundwater and possibly into nearshore waters. High nutrient inputs into ambient seawater may have both direct and indirect negative effects on sand-producing foraminifers through habitat changes and/or the collapse of algal symbiosis.

Spatial and temporal controls of atoll island inundation: implications for urbanized atolls in the Marshall Islands.

Science.gov (United States)

Ford, M.; Becker, J. M.; Merrifield, M. A.

2012-12-01

Atoll islands are highly vulnerable to a range of inundation hazards. The impacts of such hazards are expected to be magnified as a result of continued sea-level rise. Both recent and historic inundation events provide unique insights into the requisite conditions necessary to initiate island inundation. A number of recent and historic inundation events are presented in order to examine the oceanographic and meteorological conditions driving inundation of a densely populated, urbanized atoll in the central Pacific. Analysis of inundation events suggests that a number of key drivers contribute to the spatial and temporal extent of island inundation, with unique degrees of predictability and resultant impact signatures apparent on island geomorphology and local anthropogenic activities. Results indicate three distinct drivers of inundation hazards exist. Firstly, tropical storms and typhoons elevate sea level through inverse barometric setup, wind setup and a range of wave driven processes and have caused considerable impact on atolls within the Marshall Islands. Secondly, super-elevated sea level conditions resulting from the combination of seasonal high tides and quasi-cyclical La Nina conditions drive inundation of low-lying lagoon facing coastal areas. Thirdly, long period swell conditions, typically generated by distant storms, can elevate reef-flat water levels through wave setup and infragravity wave oscillations. Such wave conditions can over wash the ocean-facing island ridge, often inundating large sections of the island. Reef-flat wave conditions are tidally modulated, with inundation events typically occurring around high tide. However, the two most recent destructive swell-driven inundation events have occurred while tide levels were significantly lower than spring tide levels, suggesting high water levels are not a necessary prerequisite for wave-driven inundation. The different modes of inundation are discussed and grounded within recent and historic

CRED REA Coral Population Parameters at Kure Atoll, Northwestern Hawaiiian Islands, 2003

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 2 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Kure Atoll in the...

CRED REA Coral Population Parameters at Kure Atoll, Northwestern Hawaiiian Islands, 2002

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 2 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Kure Atoll in the...

CRED REA Coral Population Parameters at Midway Atoll, Northwestern Hawaiiian Islands, 2002

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 2 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Midway Atoll in the...

CRED REA Coral Population Parameters at Midway Atoll, Northwestern Hawaiian Islands, 2003

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 2 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Midway Atoll in the...

Terrestrial forest management plan for Palmyra Atoll

Science.gov (United States)

Hathaway, Stacie A.; McEachern, Kathryn; Fisher, Robert N.

2011-01-01

, and though rarely documented, beach nesting could be affected by terrestrial management actions. There are various nonnative or invasive species throughout the terrestrial ecosystem. The most notable examples of terrestrial invasive species include coconut palms (Cocos nucifera) and black rats (Rattus rattus). Although it is unclear whether they are nonnative, coconut palms are currently the most dominant plant across Palmyra Atoll. They compete with native plant species for space and resources and are potentially detrimental to sea birds dependent on native vegetation for roosting and nesting habitat. This competition in turn impacts nutrient resource availability, thereby reshaping energy flow in the ecosystem. Black rats are known to prey on ground-nesting sea birds and are likely responsible for the lack of burrowing sea bird reproduction at Palmyra Atoll. In addition, they may be facilitating the invasion of other nonnative species and negatively impacting other native fauna. Although the extent and impacts of these and other nonnative and (or) invasive species are not fully understood, the extent and impacts are clearly a threat to the native species and one of the most urgent threats to the overall ecosystem integrity of Palmyra Atoll. This 'Terrestrial Forest Management Plan for Palmyra Atoll' addresses issues related to invasive species and other problems. Priority goals are established as are associated objectives and strategies. The overarching goal is to perpetuate and where possible restore terrestrial ecosystem integrity through the following techniques: 1. Habitat management: Maintain and enhance habitat to the extent possible to sustain thriving Pisonia grandis forest, coastal strand forest, endemic grassland, self-sustaining populations of sea birds, shore birds, coconut crabs, native lizards, and native insects. 2. Monitoring and assessment: Acquire information on distribution and abundance as needed for conservation of each resour

Human impacts on large benthic foraminifers near a densely populated area of Majuro Atoll, Marshall Islands.

Science.gov (United States)

Osawa, Yoko; Fujita, Kazuhiko; Umezawa, Yu; Kayanne, Hajime; Ide, Yoichi; Nagaoka, Tatsutoshi; Miyajima, Toshihiro; Yamano, Hiroya

2010-08-01

Human impacts on sand-producing, large benthic foraminifers were investigated on ocean reef flats at the northeast Majuro Atoll, Marshall Islands, along a human population gradient. The densities of dominant foraminifers Calcarina and Amphistegina declined with distance from densely populated islands. Macrophyte composition on ocean reef flats differed between locations near sparsely or densely populated islands. Nutrient concentrations in reef-flat seawater and groundwater were high near or on densely populated islands. delta(15)N values in macroalgal tissues indicated that macroalgae in nearshore lagoons assimilate wastewater-derived nitrogen, whereas those on nearshore ocean reef flats assimilate nitrogen from other sources. These results suggest that increases in the human population result in high nutrient loading in groundwater and possibly into nearshore waters. High nutrient inputs into ambient seawater may have both direct and indirect negative effects on sand-producing foraminifers through habitat changes and/or the collapse of algal symbiosis. Copyright 2010 Elsevier Ltd. All rights reserved.

Microbial ecology of four coral atolls in the Northern Line Islands.

Directory of Open Access Journals (Sweden)

Elizabeth A Dinsdale

Full Text Available Microbes are key players in both healthy and degraded coral reefs. A combination of metagenomics, microscopy, culturing, and water chemistry were used to characterize microbial communities on four coral atolls in the Northern Line Islands, central Pacific. Kingman, a small uninhabited atoll which lies most northerly in the chain, had microbial and water chemistry characteristic of an open ocean ecosystem. On this atoll the microbial community was equally divided between autotrophs (mostly Prochlorococcus spp. and heterotrophs. In contrast, Kiritimati, a large and populated ( approximately 5500 people atoll, which is most southerly in the chain, had microbial and water chemistry characteristic of a near-shore environment. On Kiritimati, there were 10 times more microbial cells and virus-like particles in the water column and these microbes were dominated by heterotrophs, including a large percentage of potential pathogens. Culturable Vibrios were common only on Kiritimati. The benthic community on Kiritimati had the highest prevalence of coral disease and lowest coral cover. The middle atolls, Palmyra and Tabuaeran, had intermediate densities of microbes and viruses and higher percentages of autotrophic microbes than either Kingman or Kiritimati. The differences in microbial communities across atolls could reflect variation in 1 oceaonographic and/or hydrographic conditions or 2 human impacts associated with land-use and fishing. The fact that historically Kingman and Kiritimati did not differ strongly in their fish or benthic communities (both had large numbers of sharks and high coral cover suggest an anthropogenic component in the differences in the microbial communities. Kingman is one of the world's most pristine coral reefs, and this dataset should serve as a baseline for future studies of coral reef microbes. Obtaining the microbial data set, from atolls is particularly important given the association of microbes in the ongoing degradation

Microbial Ecology of Four Coral Atolls in the Northern Line Islands

Science.gov (United States)

Smriga, Steven; Edwards, Robert A.; Angly, Florent; Wegley, Linda; Hatay, Mark; Hall, Dana; Brown, Elysa; Haynes, Matthew; Krause, Lutz; Sala, Enric; Sandin, Stuart A.; Thurber, Rebecca Vega; Willis, Bette L.; Azam, Farooq; Knowlton, Nancy; Rohwer, Forest

2008-01-01

Microbes are key players in both healthy and degraded coral reefs. A combination of metagenomics, microscopy, culturing, and water chemistry were used to characterize microbial communities on four coral atolls in the Northern Line Islands, central Pacific. Kingman, a small uninhabited atoll which lies most northerly in the chain, had microbial and water chemistry characteristic of an open ocean ecosystem. On this atoll the microbial community was equally divided between autotrophs (mostly Prochlorococcus spp.) and heterotrophs. In contrast, Kiritimati, a large and populated (∼5500 people) atoll, which is most southerly in the chain, had microbial and water chemistry characteristic of a near-shore environment. On Kiritimati, there were 10 times more microbial cells and virus-like particles in the water column and these microbes were dominated by heterotrophs, including a large percentage of potential pathogens. Culturable Vibrios were common only on Kiritimati. The benthic community on Kiritimati had the highest prevalence of coral disease and lowest coral cover. The middle atolls, Palmyra and Tabuaeran, had intermediate densities of microbes and viruses and higher percentages of autotrophic microbes than either Kingman or Kiritimati. The differences in microbial communities across atolls could reflect variation in 1) oceaonographic and/or hydrographic conditions or 2) human impacts associated with land-use and fishing. The fact that historically Kingman and Kiritimati did not differ strongly in their fish or benthic communities (both had large numbers of sharks and high coral cover) suggest an anthropogenic component in the differences in the microbial communities. Kingman is one of the world's most pristine coral reefs, and this dataset should serve as a baseline for future studies of coral reef microbes. Obtaining the microbial data set, from atolls is particularly important given the association of microbes in the ongoing degradation of coral reef ecosystems

Biosecurity Plan for Palmyra Atoll

Science.gov (United States)

Hathaway, Stacie A.; Fisher, Robert N.

2010-01-01

This Biosecurity Plan for Palmyra Atoll was developed for The Nature Conservancy (TNC) Palmyra Program to refine and expand goals and objectives developed through the Conservation Action Plan process. The Biosecurity Plan is one in a series of adaptive management plans designed to achieve TNC's mission toward the protection and enhancement of native wildlife and habitat. The Biosecurity Plan focuses on ecosystem security, and specifically identifies and addresses issues related to non-native and potentially invasive species. The Plan attempts to identify pathways of invasion and strategies for preventing or reducing new introductions. Overall, the Biosecurity Plan provides a framework to implement and track the progress of conservation and restoration goals related to non-native species on Palmyra Atoll. Palmyra Atoll is one of the Northern Line Islands in the Pacific Ocean southwest of the Hawai`ian Islands. It consists of many heavily vegetated islets arranged in a horseshoe pattern around four lagoons and surrounded by a coral reef. At present, Palmyra Atoll harbors various non-native or invasive species in the terrestrial and marine ecosystems. The most notable examples of terrestrial invasive species include coconut trees (Cocos nucifera) and black rats (Rattus rattus). Although it is unclear whether they are non-native, coconut trees are currently the most dominant plant across Palmyra Atoll. They compete with native plant species for space and resources, and are potentially detrimental to seabirds dependent on native vegetation. Black rats are known to predate ground-nesting seabirds and are likely responsible for the lack of burrowing seabird reproduction on Palmyra Atoll. The most notable example of a marine invasive species is the corallimorph (Rhodactis howsei). Although Rhodactis howsei is a native species, it can take advantage of human-altered habitat and significantly change the natural habitat by aggressively outcompeting native corals. Although the

CRED REA Coral Population Parameters at Kure Atoll, NW Hawaiian Islands (NWHI), 2006

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 2 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Kure Atoll in the NW...

Environmental sampling plan for Kwajalein Atoll Lagoon: 2017 Kwajalein sampling event

Energy Technology Data Exchange (ETDEWEB)

Hamilton, T. F. [Lawrence Livermore National Lab. (LLNL), Livermore, CA (United States)

2017-07-01

Since the early 1980s, the U.S DOE Marshall Islands Program at LLNL has provided radiological monitoring of the marine and terrestrial environment at nuclear affected atolls in the northern Marshall Islands. The fundamental aim of these studies was to identify the level and distribution of key residual fallout radionuclide in the environment, improve understanding of prevalent radiation exposure pathways, and develop predictive dose assessments for resettled and resettling atoll population groups. These data and information were essential in terms of guiding the development of effective and environmentally protective remedial measures, and promoting potential actions to improve on food safety and security.

Radiological-dose assessments of atolls in the northern Marshall Islands

International Nuclear Information System (INIS)

Robison, W.L.

1983-04-01

The Marshall Islands in the Equatorial Pacific, specifically Enewetak and Bikini Atolls, were the site of US nuclear testing from 1946 through 1958. In 1978, the Northern Marshall Islands Radiological Survey was conducted to evaluate the radiological conditions of two islands and ten atolls downwind of the proving grounds. The survey included aerial external gamma measurements and collection of soil, terrestrial, and marine samples for radionuclide analysis to determine the radiological dose from all exposure pathways. The methods and models used to estimate doses to a population in an environment where natural processes have acted on the source-term radionuclides for nearly 30 y, data bases developed for the models, and results of the radiological dose analyses are described

Causes of mortality of albatross chicks at Midway Atoll

Science.gov (United States)

Sileo, L.; Sievert, P.R.; Samuel, M.D.

1990-01-01

As part of an investigation of the effect of plastic ingestion on seabirds in Hawaii, we necropsied the carcasses of 137 Laysan albatross (Diomedea immutabilis) chicks from Midway Atoll in the Pacific Ocean during the summer of 1987. Selected tissues were collected for microbiological, parasitological, toxicological or histopathological examinations. Dehydration was the most common cause of death. Lead poisoning, trauma, emaciation (starvation) and trombidiosis were other causes of death; nonfatal nocardiosis and avian pox also were present. There was no evidence that ingested plastic caused mechanical lesions or mortality in 1987, but most of the chicks had considerably less plastic in them than chicks from earlier years. Human activity (lead poisoning and vehicular trauma) caused mortality at Midway Atoll and represented additive mortality for pre-fledgling albatrosses.

CRED REA Coral Population Parameters at Palmyra Atoll, Pacific Remote Island Areas (PRIAs), 2006

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 2 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 13 sites at Palmyra Atoll in the...

Symbiodinium spp. associated with scleractinian corals from Dongsha Atoll (Pratas), Taiwan, in the South China Sea.

Science.gov (United States)

Keshavmurthy, Shashank; Tang, Kuo-Hsun; Hsu, Chia-Min; Gan, Chai-Hsia; Kuo, Chao-Yang; Soong, Keryea; Chou, Hong-Nong; Chen, Chaolun Allen

2017-01-01

Dongsha Atoll (also known as Pratas) in Taiwan is the northernmost atoll in the South China Sea and a designated marine national park since 2007. The marine park's scope of protection covers the bio-resources of its waters in addition to uplands, so it is important to have data logging information and analyses of marine flora and fauna, including their physiology, ecology, and genetics. As part of this effort, we investigated Symbiodinium associations in scleractinian corals from Dongsha Atoll through surveys carried out at two depth ranges (shallow, 1-5 m; and deep, 10-15 m) in 2009 and during a bleaching event in 2010. Symbiodinium composition was assessed using restriction fragment length polymorphism (RFLP) of 28S nuclear large subunit ribosomal DNA (nlsrDNA). Our results showed that the 796 coral samples from seven families and 20 genera collected in 2009 and 132 coral samples from seven families and 12 genera collected in 2010 were associated with Symbiodinium C, D and C+D. Occurrence of clade D in shallow water (24.5%) was higher compared to deep (14.9%). Due to a bleaching event in 2010, up to 80% of coral species associated with Symbiodinium C underwent moderate to severe bleaching. Using the fine resolution technique of denaturing gradient gel electrophoresis (DGGE) of internal transcribed spacer 2 (ITS2) in 175 randomly selected coral samples, from 2009 and 2010, eight Symbiodinium C types and two Symbiodinium D types were detected. This study is the first baseline survey on Symbiodinium associations in the corals of Dongsha Atoll in the South China Sea, and it shows the dominance of Symbiodinium clade C in the population.

Multidecadal shoreline changes of atoll islands in the Marshall Islands

Science.gov (United States)

Ford, M.

2012-12-01

Atoll islands are considered highly vulnerable to the impacts of continued sea level rise. One of the most commonly predicted outcomes of continued sea level rise is widespread and chronic shoreline erosion. Despite the widespread implications of predicted erosion, the decadal scale changes of atoll island shorelines are poorly resolved. The Marshall Islands is one of only four countries where the majority of inhabited land is comprised of reef and atoll islands. Consisting of 29 atolls and 5 mid-ocean reef islands, the Marshall Islands are considered highly vulnerable to the impacts of sea level rise. A detailed analysis of shoreline change on over 300 islands on 10 atolls was undertaken using historic aerial photos (1945-1978) and modern high resolution satellite imagery (2004-2012). Results highlight the complex and dynamic nature of atoll islands, with significant shifts in shoreline position observed over the period of analysis. Results suggest shoreline accretion is the dominant mode of change on the islands studied, often associated with a net increase in vegetated island area. However, considerable inter- and intra-atoll variability exists with regards to shoreline stability. Findings are discussed with respect to island morphodynamics and potential hazard mitigation and planning responses within atoll settings.

Symbiodinium spp. associated with scleractinian corals from Dongsha Atoll (Pratas, Taiwan, in the South China Sea

Directory of Open Access Journals (Sweden)

Shashank Keshavmurthy

2017-01-01

Full Text Available Dongsha Atoll (also known as Pratas in Taiwan is the northernmost atoll in the South China Sea and a designated marine national park since 2007. The marine park’s scope of protection covers the bio-resources of its waters in addition to uplands, so it is important to have data logging information and analyses of marine flora and fauna, including their physiology, ecology, and genetics. As part of this effort, we investigated Symbiodinium associations in scleractinian corals from Dongsha Atoll through surveys carried out at two depth ranges (shallow, 1–5 m; and deep, 10–15 m in 2009 and during a bleaching event in 2010. Symbiodinium composition was assessed using restriction fragment length polymorphism (RFLP of 28S nuclear large subunit ribosomal DNA (nlsrDNA. Our results showed that the 796 coral samples from seven families and 20 genera collected in 2009 and 132 coral samples from seven families and 12 genera collected in 2010 were associated with Symbiodinium C, D and C+D. Occurrence of clade D in shallow water (24.5% was higher compared to deep (14.9%. Due to a bleaching event in 2010, up to 80% of coral species associated with Symbiodinium C underwent moderate to severe bleaching. Using the fine resolution technique of denaturing gradient gel electrophoresis (DGGE of internal transcribed spacer 2 (ITS2 in 175 randomly selected coral samples, from 2009 and 2010, eight Symbiodinium C types and two Symbiodinium D types were detected. This study is the first baseline survey on Symbiodinium associations in the corals of Dongsha Atoll in the South China Sea, and it shows the dominance of Symbiodinium clade C in the population.

CRED REA Coral Population Parameters at Johnston Atoll, Pacific Remote Island Areas (PRIAs) in 2008

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 2 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 4 sites at Johnston Atoll in the...

CRED REA Coral Population Parameters at Pearl and Hermes Atoll, NW Hawaiian Islands (NWHI), 2006

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 2 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 13 sites at Pearl and Hermes Atoll...

Dosimetry methods and results for the former residents of Bikini Atoll

International Nuclear Information System (INIS)

Greenhouse, N.A.

1979-01-01

The US Government utilized Bikini and Enewetak Atolls in the northern Marshall Islands of Micronesia for atomspheric tests of nuclear explosives in the 1940's and 1950's. The original inhabitants of these atolls were relocated prior to the tests. During the early 1970's, a small but growing population of Marshallese people reinhabited Bikini. Environmental and personnel radiological monitoring programs were begun in 1974 to ensure that doses and dose commitments received by Bikini residents remained within US Federal Radiation Council guidelines. Dramatic increases in 137 Cs body burdens among the inhabitants between April 1977 and 1978 may have played a significant role in the government decision to move the 140 Bikinians in residence off of the atoll in August 1978. The average 137 Cs body burden for the population was 2.3 μCi in April 1978. Several individuals, however, exceeded the maximum permissible body burden of 3 μCi, and some approached 6 μCi. The resultant total dose commitment was less than 200 mrem for the average resident. The average total dose for the mean residence interval of approx. 4.5 years was about 1 rem. The sources of exposure, the probable cause of the unexpected increase in 137 Cs body burdens, and the methods for calculating radionuclide intake and resultant doses are discussed. Suggestions are offered as to the implications of the most significant exposure pathways for the future inhabitation of Bikini and Enewetak

An Ecological Assessment of Johnston Atoll

Science.gov (United States)

2012-01-01

limits Short-nose Wrasse, Macropharyngodon geoffroy Global Climate Event causes Coral Bleaching Research by Anne L. Cohen, P. S. Lobel, and Gabrielle L...L. Tomasky. An unusual event of Coral bleaching on Johnston Atoll, Central Pacific Ocean. Biological Bulletin 193:276-279. On 10 September 1996...extensive coral bleaching was noted on Johnston Atoll. Between September 1996 and March 1997 the nature and extent of the bleaching , as well as the

Bikini Atoll groundwater development

International Nuclear Information System (INIS)

Peterson, F.L.

1985-01-01

Nuclear weapons testing during the 1950's has left the soil and ground water on Bikini Atoll contaminated with cesium-137, and to a lesser extent, strontium-90. Plans currently are underway for the clean-up and resettlement of the atoll by removal of approximately the upper 30 cm of soil. Any large-scale resettlement program must include provisions for water supply. This will be achieved principally by catchment and storage of rain water, however, since rainfall in Bikini is highly seasonal and droughts occur frequently, ground water development must also be considered. The quantity of potable ground water that can be developed is limited by its salinity and radiological quality. The few ground water samples available from Bikini, which have been collected from only about the top meter of the groundwater body, indicate that small bodies of potable ground water exist on Bikini and Eneu, the two principal living islands, but that cesium and strontium in the Bikioni ground water exceed drinking water standards. In order to make a reasonable estimate of the ground water development potential for the atoll, some 40 test boreholes will be drilled during July/August 1985, and a program of water quality monitoring initiated. This paper will describe preliminary results of the drilling and monitoring work

Estimating the Ground Water Resources of Atoll Islands

Directory of Open Access Journals (Sweden)

Arne E. Olsen

2010-01-01

Full Text Available Ground water resources of atolls, already minimal due to the small surface area and low elevation of the islands, are also subject to recurring, and sometimes devastating, droughts. As ground water resources become the sole fresh water source when rain catchment supplies are exhausted, it is critical to assess current groundwater resources and predict their depletion during drought conditions. Several published models, both analytical and empirical, are available to estimate the steady-state freshwater lens thickness of small oceanic islands. None fully incorporates unique shallow geologic characteristics of atoll islands, and none incorporates time-dependent processes. In this paper, we provide a review of these models, and then present a simple algebraic model, derived from results of a comprehensive numerical modeling study of steady-state atoll island aquifer dynamics, to predict the ground water response to changes in recharge on atoll islands. The model provides an estimate thickness of the freshwater lens as a function of annual rainfall rate, island width, Thurber Discontinuity depth, upper aquifer hydraulic conductivity, presence or absence of a confining reef flat plate, and in the case of drought, time. Results compare favorably with published atoll island lens thickness observations. The algebraic model is incorporated into a spreadsheet interface for use by island water resources managers.

Processing plutonium-contaminated soil on Johnston Atoll

International Nuclear Information System (INIS)

Moroney, K.; Moroney, J. III; Turney, J.

1994-01-01

This article describes a cleanup project to process plutonium- and americium-contaminated soil on Johnston Atoll for volume reduction. Thermo Analytical's (TMA's) segmented gate system (SGS) for this remedial operation has been in successful on-site operation since 1992. Topics covered include the basis for development, a description of the Johnston Atoll; the significance of results; the benefits of the technology; applicability to other radiologically contaminated sites. 7 figs., 1 tab

An assessment of potential health impacts on Utrok Atoll from exposure to cesium-137 (137Cs) and plutonium

International Nuclear Information System (INIS)

Hamilton, T

2007-01-01

Residual fallout contamination from the nuclear test program in the Marshall Islands is a concern to Marshall Islanders because of the potential health risks associated with exposure to residual fallout contamination in the environment. Scientists from Lawrence Livermore National Laboratory (LLNL) have been monitoring the amount of fallout radiation delivered to Utrok Atoll residents over the past 4 years. This briefing document gives an outline of our findings from the whole body counting and plutonium bioassay monitoring programs. Additional information can be found on the Marshall Islands web site (http://eed.lnl.gov/mi/). Cesium-137 is an important radioactive isotope produced in nuclear detonations and can be taken up from coral soils into locally grown food crop products that form an important part of the Marshallese diet. The Marshall Islands whole body counting program has clearly demonstrated that the majority of Utrok Atoll residents acquire a very small but measurable quantity of cesium-137 in their bodies (Hamilton et al., 2006; Hamilton et. al., 2007a; 2007b;). During 2006, a typical resident of Utrok Atoll received about 3 mrem of radiation from internally deposited cesium-137 (Hamilton et al., 2007a). The population-average dose contribution from cesium-137 is around 2% of the total radiation dose that people normally experience from naturally occurring radiation sources in the Marshall Islands and is thousands of times lower than the level where radiation exposure is known to produce measurable health effects. The existing dose estimates from the whole body counting and plutonium bioassay programs are also well below radiological protection standards for protection of the public as prescribed by U.S. regulators and international agencies including the Marshall Islands Nuclear Claim Tribunal (NCT). Similarly, the level of internally deposited plutonium found in Utrok Atoll residents is well within the range normally expected for people living in the

The terrestrial phosphorus economy of mid-Pacific atolls: Implications for the future

Energy Technology Data Exchange (ETDEWEB)

Rodgers, K.A. [Auckland Univ. (New Zealand). Dept. of Geology

1998-03-01

Major subsystems of the terrestrial phosphorus cycle on the densely populated, 142 ha motu of Fogafale, are: carbonate substrate ({approx} 10{sup 3} g P t{sup -1}), groundwater ({approx} 0.4 g P t{sup -1}), terrestrial flora ({approx} 0.22 t P ha{sup -1}) and fauna ({approx} 18 kg P ha{sup -1}). Freshwater provides the principal medium for terrestrial geochemical atoll processes and is the central recycling plant for phosphorus from atmospheric fallout and decomposition of biotic waste. Present data cannot determine precise fluxes within and between all subsystems, but perturbations, resulting from increasing human populations and changing land use, may be estimated. Changes in Fogafale`s biotic phosphorus capitals and increasing phosphorus-containing imports have skewed fluxes and transfer routes of biogenic waste. Atolls are dynamic systems, able to recover from environmental disruptions, but the sustainability and effectiveness of underlying biogeochemical cycles require quantification, monitoring and nurturing. In particular, the integrity of Fogafale`s essential fresh groundwater needs to be ascertained and protected 40 refs, 7 figs, 2 tabs

The radiological situation at the atolls of Mururoa and Fangataufa. Technical report. V. 6. Doses due to radioactive materials present in the environment or released from the atolls

International Nuclear Information System (INIS)

1998-08-01

In the previous volumes of this Report the concentrations of residual radioactivity in the environment of Mururoa and Fangataufa atolls have been described, and assessment made of the releases to the environment in the future. The further step in radiological assessment is the derivation of radiation doses that arise to actually or potentially exposed populations, from these concentrations and releases. These doses are estimated in this report. The existence of a hypothetical population resident on Mururoa is postulated as the group which would be most exposed. Doses to this group are estimated together with doses to maximally exposed residents on nearby South Pacific islands, and further afield. An assessment of the potential environmental impact of the residual contaminant radionuclides from the nuclear weapons testing at Mururoa and Fangataufa requires estimates of the incremental dose rates to a variety of marine organisms inhabiting a number of different ecological niches. These estimated dose rates provide the only secure basis for an assessment of the potential radiation effects in the organisms. The approach adopted for this assessment is that employed in a number of recent studies and adapts the dosimetry models for the particular organisms of interest in the atoll environment

The atolls of Mururoa and Fangataufa (French Polynesia). The nuclear testings. Radiological aspects; Les atolls de Mururoa et de Fangataufa (Polynesie Francaise). Les experimentations nucleaires. Aspects radiologiques

Energy Technology Data Exchange (ETDEWEB)

Martin, G

2007-07-01

This report provides a review of the radiological measures implemented during the thirty year period of French nuclear tests in Polynesian atolls of Mururoa and Fangataufa. It presents full details of the practices deployed throughout these tests, including, in particular, aspects concerning radiological protection for the population and the environment. It contains all the scientific results and measurements of radioactivity performed during this period, providing concrete facts that can be used to assess the consequences these tests have had on the personnel involved, the population and the environment. (author)

Uncharted waters: Bivalves of midway atoll and integrating mathematics into biology education

Science.gov (United States)

McCully, Kristin M.

To protect and conserve the Earth's biodiversity and ecosystem services, it is important not only to understand and conserve species and ecosystems, but also to instill an understanding and appreciation for biodiversity and ecosystem services in the next generations of both scientists and citizens. Thus, this dissertation combines research into the ecology and identity of large bivalves at Midway Atoll in the Northwestern Hawaiian Islands (NWHI) with research on pedagogical strategies for integrating mathematics into undergraduate biology education. The NWHI is one of the few remaining large, mainly intact, predator-dominated coral reef ecosystems and one of the world's largest marine protected areas. Previous bivalve studies focused on the black-lipped pearl oyster, Pinctada margaritifera, which was heavily harvested in the late 1920s, has not recovered, and is now a candidate species for restoration. First, I combined remote sensing, geographic information systems, SCUBA, and mathematical modeling to quantify the abundance, spatial distributions, and filtration capacity of large epifaunal bivalves at Midway Atoll. These bivalves are most abundant on the forereef outside the atoll, but densities are much lower than reported on other reefs, and Midway's bivalves are unlikely to affect plankton abundance and productivity inside the lagoon. Second, I used molecular techniques and phylogenetic reconstructions to identify pearl oysters (Pinctada) from Midway Atoll as P. maculata , a species not previously reported in Hawaii. As a small morphologically cryptic species, P. maculata may be a native species that has not been collected previously, a native species that has been identified incorrectly as the morphologically similar P. radiata, or it may be a recent introduction or natural range extension from the western Pacific. Finally, I review science education literature integrating mathematics into undergraduate biology curricula, and then present and evaluate a

Geochemistry of transuranic elements at Bikini Atoll

International Nuclear Information System (INIS)

Schell, W.R.; Lowman, F.G.; Marshall, R.P.

1980-01-01

The distribution of transuranic and other radionuclides in the marine environment at Bikini Atoll was studied to better understand the geochemical cycling of radionuclides produced by nuclear testing between 1946 and 1958. The reef areas, which are washed continually by clean ocean water, have low levels of radionuclide concentrations. Radionuclides are contained in fallout particles of pulverized coral. In the water these particles may dissolve, be transported by currents within the Atoll, or enter the North Equatorial Current by tidal exchange of water in the lagoon. The transuranic elements are distributed widely in sediments over the northwest quadrant of the Atoll, which suggests that this area serves as a settling basin for particles. The distribution of plutonium in the water column indicates that plutonium in the sediments is released to the bottom waters and then is transported and diluted by the prevailing currents. Upon interaction with the lagoon environment, plutonium occurs in several physicochemical states. Laboratory tests and field studies at Bikini show that approximately 15% of the plutonium is associated with the colloidal fraction

Atoll mangroves and associated flora from Republic of Maldives, Indian Ocean

Digital Repository Service at National Institute of Oceanography (India)

Jagtap, T.G.; Untawale, A.G.

of the north atolls. Male' atoll was totally devoid of mangroves due to their large scale reclamation mainly for urbanisation and tourism. Mangrove flora comprised of 12 species and was dominated by Bruguiera cylindrica followed by Lumnitzera racemosa, Ceriops...

Radiation doses for Marshall Islands Atolls Affected by U.S. Nuclear Testing:All Exposure Pathways, Remedial Measures, and Environmental Loss of 137Cs

Energy Technology Data Exchange (ETDEWEB)

Robison, W L; Hamilton, T F

2009-04-20

Rongelap Atoll (Robison et al., 1994; Simon et al., 1997), and Utrok Island at Utrok Atoll (Robison, et al., 1999) indicate that about 95-99% of the total estimated dose to people who may return to live at the atolls today (Utrok Island is populated) is the result of exposure to {sup 137}Cs. External gamma exposure from {sup 137}Cs in the soil accounts for about 10 to 15% of the total dose and {sup 137}Cs ingested during consumption of local food crops such as drinking coconut meat and fluid (Cocos nucifera L.), copra meat and milk, Pandanus fruit, and breadfruit accounts for about 85 to 90%. The other 1 to 2% of the estimated dose is from {sup 90}Sr, {sup 239+240}Pu, and {sup 241}Am. The {sup 90}Sr exposure is primarily through the food chain while the exposure to {sup 239+240}Pu, and {sup 241}Am is primarily via the inhalation pathway as a result of breathing re-suspended soil particles.

The radiological situation at the atolls of Mururoa and Fangataufa. Technical report. V. 6. Doses due to radioactive materials present in the environment or released from the atolls

Energy Technology Data Exchange (ETDEWEB)

International Advisory Committee, Task Group A

1998-08-01

In the previous volumes of this Report the concentrations of residual radioactivity in the environment of Mururoa and Fangataufa atolls have been described, and assessment made of the releases to the environment in the future. The further step in radiological assessment is the derivation of radiation doses that arise to actually or potentially exposed populations, from these concentrations and releases. These doses are estimated in this report. The existence of a hypothetical population resident on Mururoa is postulated as the group which would be most exposed. Doses to this group are estimated together with doses to maximally exposed residents on nearby South Pacific islands, and further afield. An assessment of the potential environmental impact of the residual contaminant radionuclides from the nuclear weapons testing at Mururoa and Fangataufa requires estimates of the incremental dose rates to a variety of marine organisms inhabiting a number of different ecological niches. These estimated dose rates provide the only secure basis for an assessment of the potential radiation effects in the organisms. The approach adopted for this assessment is that employed in a number of recent studies and adapts the dosimetry models for the particular organisms of interest in the atoll environment Refs, figs, tabs. In six volumes

One-meter topobathymetric digital elevation model for Majuro Atoll, Republic of the Marshall Islands, 1944 to 2016

Science.gov (United States)

Palaseanu-Lovejoy, Monica; Poppenga, Sandra K.; Danielson, Jeffrey J.; Tyler, Dean J.; Gesch, Dean B.; Kottermair, Maria; Jalandoni, Andrea; Carlson, Edward; Thatcher, Cindy A.; Barbee, Matthew M.

2018-03-30

Atoll and island coastal communities are highly exposed to sea-level rise, tsunamis, storm surges, rogue waves, king tides, and the occasional combination of multiple factors, such as high regional sea levels, extreme high local tides, and unusually strong wave set-up. The elevation of most of these atolls averages just under 3 meters (m), with many areas roughly at sea level. The lack of high-resolution topographic data has been identified as a critical data gap for hazard vulnerability and adaptation efforts and for high-resolution inundation modeling for atoll nations. Modern topographic survey equipment and airborne lidar surveys can be very difficult and costly to deploy. Therefore, unmanned aircraft systems (UAS) were investigated for collecting overlapping imagery to generate topographic digital elevation models (DEMs). Medium- and high-resolution satellite imagery (Landsat 8 and WorldView-3) was investigated to derive nearshore bathymetry.The Republic of the Marshall Islands is associated with the United States through a Compact of Free Association, and Majuro Atoll is home to the capital city of Majuro and the largest population of the Republic of the Marshall Islands. The only elevation datasets currently available for the entire Majuro Atoll are the Shuttle Radar Topography Mission and the Advanced Spaceborne Thermal Emission and Reflection Radiometer Global Digital Elevation Model Version 2 elevation data, which have a 30-m grid-cell spacing and a 8-m vertical root mean square error (RMSE). Both these datasets have inadequate spatial resolution and vertical accuracy for inundation modeling.The final topobathymetric DEM (TBDEM) developed for Majuro Atoll is derived from various data sources including charts, soundings, acoustic sonar, and UAS and satellite imagery spanning over 70 years of data collection (1944 to 2016) on different sections of the atoll. The RMSE of the TBDEM over the land area is 0.197 m using over 70,000 Global Navigation Satellite

Radionuclides in sediments and seawater at Rongelap Atoll

Energy Technology Data Exchange (ETDEWEB)

Noshkin, V.E.; Robison, W.L.; Eagle, R.J.; Brunk, J.L.

1998-03-01

The present concentrations and distributions of long-lived, man-made radionuclides in Rongelap Atoll lagoon surface sediments, based on samples collected and analyzed in this report. The radionuclides were associated with debris generated with the 1954 Bravo thermonuclear test at Bikini Atoll. Presently, only {sup 90}Sr and the transuranic radionuclides are found associated with the surface sediments in any quantity. Other radionuclides, including {sup 60}Co and {sup 137} Cs, are virtually absent and have either decayed or migrated from the deposits to the overlying seawater. Present inventories of {sup 241}Am and {sup 249+240}Pu in the surface layer at Rongelap are estimated to be 3% of the respective inventories in surface sediments from Bikini Atoll. There is a continuous slow release of the transuranics from the sediments back to the water column. The inventories will only slowly change with time unless the chemical-physical processes that now regulate this release to the water column are changed or altered.

Numerical modeling of atoll island hydrogeology.

Science.gov (United States)

Bailey, R T; Jenson, J W; Olsen, A E

2009-01-01

We implemented Ayers and Vachers' (1986) inclusive conceptual model for atoll island aquifers in a comprehensive numerical modeling study to evaluate the response of the fresh water lens to selected controlling climatic and geologic variables. Climatic factors include both constant and time-varying recharge rates, with particular attention paid to the effects of El Niño and the associated drought it brings to the western Pacific. Geologic factors include island width; hydraulic conductivity of the uppermost Holocene-age aquifer, which contains the fresh water lens; the depth to the contact with the underlying, and much more conductive, Pleistocene karst aquifer, which transmits tidal signals to the base of the lens; and the presence or absence of a semiconfining reef flat plate on the ocean side. Sensitivity analyses of steady-steady simulations show that lens thickness is most strongly sensitive to the depth to the Holocene-Pleistocene contact and to the hydraulic conductivity of the Holocene aquifer, respectively. Comparisons between modeling results and published observations of atoll island lens thicknesses suggest a hydraulic conductivity of approximately 50 m/d for leeward islands and approximately 400 m/d for windward islands. Results of transient simulations show that lens thickness fluctuations during average seasonal conditions and El Niño events are quite sensitive to island width, recharge rate, and hydraulic conductivity of the Holocene aquifer. In general, the depletion of the lens during drought conditions is most drastic for small, windward islands. Simulation results suggest that recovery from a 6-month drought requires about 1.5 years.

Evaluation of atrazine plus isoxaflutole (Atoll®) mixture for weed ...

African Journals Online (AJOL)

Field experiments were set up in three ecological zones of southwestern Nigeria to evaluate the effectiveness of Atoll® (atrazine + isoxaflutole), a new herbicide mixture, for weed control in maize. Crop i njury rating indicated pronounced phytotoxic effect on crops from 1.34 to 1.61 kg a.i. ha-1 Atoll in all locations. Acceptable ...

Culture, hydrology, and other situational controls on atoll freshwater availability (Majuro, Republic of the Marshall Islands)

Science.gov (United States)

Shuster, W.

2016-12-01

The comparatively uncertain rainfall catch and rising seas in isolated North Pacific atoll communities has presented serious challenges to maintain human communities with freshwater volume. Moreover, the feudal hierarchy, which structures social and economic relationships among local governance and citizens contributes equally to problems and potential solutions. These relationships modulate the availability of critical ecosystem services generated by freshwater, with additional constraints contributed by climate change, rainfall variability (e.g., current El Niño climate pattern), and continuous threat of drought. The major freshwater resources for an atoll are the groundwater freshwater lens, residential and commercial rainwater harvesting, large-scale rainfall catchments (e.g., an airport runway), imported-virtual water, or desalinization subsidies. The significance of each of these resources scale across different atolls according to size, topography, soils, population, infrastructure, and land ownership. The potential integration and coordination of these water resources is largely unrealized due to land ownership, the lack of a contiguous catchment area, uneven and fractured governance. The situational aspects are further characterized by feuding among families and communities (some resource rich, some resource poor), and conflicting land use priorities where agriculture placement and practice can compromise the quality of already limited freshwater resources. This presentation uses the example of Majuro atoll (Republic of the Marshall Islands), field data and other observations, to illustrate sociohydrologic-drivers of freshwater availability, and suggests approaches that may improve on current and ongoing threats to public health and well-being.

Ground-water resources of the Laura area, Majuro Atoll, Marshall Islands

Science.gov (United States)

Hamlin, S.N.; Anthony, S.S.

1987-01-01

The water system that supplies the heavily populated Dalap-Uliga-Darrit (DUD) area of Majuro atoll, Marshall Island, relies almost entirely upon airstrip catchment of rain water. Droughts cause severe water supply problems and water rationing is required, even during periods of normal rainfall. The Laura area contains a substantial lens of fresh groundwater that could be developed for export to the DUD area 30 mi to the east. Study of the groundwater resource at Laura involved a survey of existing wells, installation of monitoring wells and test holes, compilation of continuous records of rainfall and water level fluctuations, and collection of water quality data. Test hole data permitted the definition of three geohydrologic units which correlate well with similar units in Bikini and Enewetak atolls. The units consist of two layers of unconsolidated reef and lagoon sediments resting on a dense, highly permeable limestone. The potable water zone, or freshwater nucleus, of the lens is contained mostly within the unconsolidated layers, which are much less permeable than the basal limestone. Recharge to the Laura freshwater lens is estimated to be 1.8 mil gal/day, based on an average annual rainfall of 140 in. Sustainable yield is estimated to be about 400,000 gal/day. Shallow skimming wells or infiltration galleries similar to those used on Kwajalein atoll would be appropriate to develop the freshwater lens. The impact of development on the lens can be determined by monitoring the salinity in developed water and in a network of monitor wells. (Author 's abstract)

The radiological situation at the atolls of Mururoa and Fangataufa. Technical report. V. 1. Radionuclide concentrations measured in the terrestrial environment of the atolls

International Nuclear Information System (INIS)

1998-08-01

This report provides technical details of the terrestrial sampling and measurement campaign undertaken as part of the Study of the Radiological Situation at the Atolls of Mururoa, Fangataufa by the Terrestrial Working Group. The primary objective of this group was to evaluate existing French data on the presence of environmental radionuclides on the atolls of Mururoa, Fangataufa and Tureia in French Polynesia. All aspects of the terrestrial environments of Mururoa and Fangataufa Atolls - the sites of atmospheric and underground nuclear tests - were included in the sampling programme. Tureia Atoll - the nearest inhabited island - was also included in the sampling programme, in order to determine whether deposits from atmospheric testing are detectable there. The task required the co-operation of many different parties in order to provide the supporting logistics for the sampling campaign and the expertise for analysing the different radionuclides of interest in the samples collected. Samples were analysed by members of the IAEA's co-ordinated international network of Analytical Laboratories for Measuring Environmental Radioactivity (ALMERA) and the Agency's laboratories, Seibersdorf. Samples were also sent to the French Service Mixte de Surveillance Radiologique et Biologique (SMSRB)

The radiological situation at the atolls of Mururoa and Fangataufa. Technical report. V. 2. Radionuclide concentrations measured in the aquatic environment of the atolls

International Nuclear Information System (INIS)

1998-08-01

A marine monitoring programme was carried out within the framework of the IAEA's project entitled ''Study of the Radiological Situation at Mururoa and Fangataufa Atolls'' with the aim of assessing present radionuclide concentrations in the marine environment of Mururoa and Fangataufa Atolls. The terms of reference of the marine working group (WG2) included a review of the data provided by the French authorities on radionuclide distributions in the littoral and sub-littoral environments at the atolls. Further, using accredited international laboratories, it was decided to carry out sufficient and new independent monitoring work at and around the atolls in order to validate existing French data and, the same time, to provide a representative and high quality data set on current radionuclide concentrations in the marine environment, with particular reference to the requirement of Task Group A for radiological assessment purposes. This work included measurements of the current radionuclide concentrations in the marine environment, and estimation of concentration factors and K d values appropriate for the region. The variations in activity concentrations in the lagoons over the past few years are discussed, and the likely sources of activity implied by these data are identified where possible

External radiation survey and dose predictions for Rongelap, Utirik, Rongerik, Ailuk, and Wotje Atolls

International Nuclear Information System (INIS)

Greenhouse, N.A.; Miltenberger, R.P.

1977-01-01

External radiation measurements were made at several atolls in the northern Marshall Islands, which are known or suspected to have been the recipients of tropospheric fallout during the Pacific Testing Programs. Sufficient data were available to ascertain realistic dose predictions for the inhabitants of Rongelap and Utirik Atolls where the 30 year integral doses from external sources exclusive of background radiation were 0.65 and 0.06 rem respectively. These estimates are based on realistic life-style models based on observations of each atoll community. Ailuk and Wotje Atolls were found to be represenatives of regional background radiation levels

The atolls of Mururoa and Fangataufa (French Polynesia). The nuclear testings. Radiological aspects

International Nuclear Information System (INIS)

Martin, G.

2007-01-01

This report provides a review of the radiological measures implemented during the thirty year period of French nuclear tests in Polynesian atolls of Mururoa and Fangataufa. It presents full details of the practices deployed throughout these tests, including, in particular, aspects concerning radiological protection for the population and the environment. It contains all the scientific results and measurements of radioactivity performed during this period, providing concrete facts that can be used to assess the consequences these tests have had on the personnel involved, the population and the environment. (author)

An investigation into the prevalence of thyroid disease on Kwajalein Atoll, Marshall Islands.

Science.gov (United States)

Takahashi, T; Trott, K R; Fujimori, K; Simon, S L; Ohtomo, H; Nakashima, N; Takaya, K; Kimura, N; Satomi, S; Schoemaker, M J

1997-07-01

The prevalence of thyroid nodules and thyroid cancer was studied in the indigenous population residing on Ebeye Island, Kwajalein Atoll, in the Republic of the Marshall Islands. This island, centrally located in the nation, is home to about 25% of the nation's population, many who have migrated there from other atolls. The objective of the study was to obtain thyroid disease rate statistics on as much of the population as possible that was alive during the years of nuclear testing and to test the hypothesis that described a linearly decreasing prevalence of palpable nodules with increasing distance from the Bikini test site. 1,322 Marshallese born before 1965 were given a thyroid examination using neck palpation, fine needle aspiration biopsy, and high resolution ultrasound imaging. Approximately 40% of the total population living on this island who are at risk from exposure to radioactive fallout during the years 1946-1958 were screened. Of that group, 815 were alive at the time of the BRAVO test on 1 March 1954. Two hundred sixty-six people with thyroid nodules were found (32.6%): 132 were palpable nodules (16.2%), and 134 were nodules that could be diagnosed with ultrasound only (15.7%). Prevalence of palpable nodules was particularly high in men and women older than 60 y, in men who were 6 to 15 y of age at the time of the BRAVO test, and in women 1 to 10 y of age at the time of the BRAVO test. In 22 people, the clinical diagnosis was most likely cancer though histopathological evidence was only available from 11 operated cases. Of the 11 operated cases, 10 were cancer. Cancer prevalence was particularly high in those women born between 1944 and 1953 (7/220 = 3.2%), i.e., who were children during the early years of nuclear testing. The Ebeye data showed a marginally significant correlation between palpable nodule prevalence among women and distance to Bikini (r = -0.44, p = 0.06). This report summarizes the clinical findings of the thyroid examinations, the age

Human impact on atolls leads to coral loss and community homogenisation: a modeling study.

Directory of Open Access Journals (Sweden)

Bernhard M Riegl

Full Text Available We explore impacts on pristine atolls subjected to anthropogenic near-field (human habitation and far-field (climate and environmental change pressure. Using literature data of human impacts on reefs, we parameterize forecast models to evaluate trajectories in coral cover under impact scenarios that primarily act via recruitment and increased mortality of larger corals. From surveys across the Chagos, we investigate the regeneration dynamics of coral populations distant from human habitation after natural disturbances. Using a size-based mathematical model based on a time-series of coral community and population data from 1999-2006, we provide hind- and forecast data for coral population dynamics within lagoons and on ocean-facing reefs verified against monitoring from 1979-2009. Environmental data (currents, temperatures were used for calibration. The coral community was simplified into growth typologies: branching and encrusting, arboresent and massive corals. Community patterns observed in the field were influenced by bleaching-related mortality, most notably in 1998. Survival had been highest in deep lagoonal settings, which suggests a refuge. Recruitment levels were higher in lagoons than on ocean-facing reefs. When adding stress by direct human pressure, climate and environmental change as increased disturbance frequency and modified recruitment and mortality levels (due to eutrophication, overfishing, pollution, heat, acidification, etc, models suggest steep declines in coral populations and loss of community diversification among habitats. We found it likely that degradation of lagoonal coral populations would impact regeneration potential of all coral populations, also on ocean-facing reefs, thus decreasing reef resilience on the entire atoll.

Marine radioactivity assessment of Mururoa and Fangataufa atolls

International Nuclear Information System (INIS)

Povinec, P.P.; Dovlete, C.; Gastaud, J.; Ikeuchi, Y.; Wee Kwong, L.L.; Mulsow, S.; Pettersson, H.; Woodhead, D.; Blowers, P.; Bonfield, R.; Smedley, P.; Taylor, B.; Cooper, M.; Chen, Q.; Dahlgaard, H.; Fox, V.; Morgenstern, U.; Taylor, C.; Froehlich, K.; Groening, M.; Hamilton, T.; Kanisch, G.; Krueger, A.; Matthews, M.; Tinker, R.

1999-01-01

The International Atomic Energy Agency (IAEA) carried out an international project 'The Study of the Radiological Situation at the Atolls of Mururoa and Fangataufa' with the aim of assessing the present and future radiological situation at the atolls and making recommendations for either monitoring or remedial actions if they are deemed necessary. The paper concentrates on marine radioactivity aspects and gives an estimation of present radionuclide concentrations in water, sediment and biota of the Mururoa and Fangataufa lagoons and the surrounding ocean. The dominant radionuclide in both lagoons is Pu in sediments (the total inventory is approximately 30 TBq). A decline in radionuclide concentrations has been observed in recent years in lagoon water, with the exception of 3H and 90Sr, for which a contribution from underground sources is to be expected. Radionuclide concentrations in biota from the lagoons and the surrounding ocean are low and consistent with previous measurements. The observed radionuclide concentrations in both lagoons imply that no radiological risk exists for hypothetical inhabitants of Mururoa and Fangataufa Atolls

Hydrogeology and management of freshwater lenses on atoll islands: Review of current knowledge and research needs

Science.gov (United States)

Werner, Adrian D.; Sharp, Hannah K.; Galvis, Sandra C.; Post, Vincent E. A.; Sinclair, Peter

2017-08-01

On atoll islands, fresh groundwater occurs as a buoyant lens-shaped body surrounded by saltwater derived from the sea, forming the main freshwater source for many island communities. A review of the state of knowledge of atoll island groundwater is overdue given their susceptibility to adverse impacts, and the task to address water access and sanitation issues within the United Nations' Sustainable Development Goals framework before the year 2030. In this article, we review available literature to summarise the key processes, investigation techniques and management approaches of atoll island groundwater systems. Over fifty years of investigation has led to important advancements in the understanding of atoll hydrogeology, but a paucity of hydrogeological data persists on all but a small number of atoll islands. We find that the combined effects of buoyancy forces, complex geology, tides, episodic ocean events, strong climatic variability and human impacts create highly dynamic fresh groundwater lenses. Methods used to quantify freshwater availability range from simple empirical relationships to three-dimensional density-dependent models. Generic atoll island numerical models have proven popular in trying to unravel the individual factors controlling fresh groundwater lens behaviour. Major challenges face the inhabitants and custodians of atoll island aquifers, with rising anthropogenic stresses compounded by the threats of climate variability and change, sea-level rise, and some atolls already extracting freshwater at or above sustainability limits. We find that the study of atoll groundwater systems remains a critical area for further research effort to address persistent knowledge gaps, which lead to high uncertainties in water security issues for both island residents and surrounding environs.

Exploring Mosquito Fauna of Majuro Atoll (Republic of Marshall Islands) in the Context of Zika Outbreak.

Science.gov (United States)

Marie, Jérôme; Perera, Devika; Garstang, Helentina; Bossin, Herve C; Bourtzis, Kostas

2018-04-09

First autochthonous Zika clinical case was reported in the Republic of Marshall Islands (RMI) on Majuro Atoll in February 2016. An entomological survey of mosquito larvae and adult populations was carried out in four areas of Majuro, the most populated atoll of RMI encompassing different habitats (forest, rural, or urban) including some with confirmed clinical Zika cases to evaluate which mosquito species could be involved in the Zika transmission. A total of 2,367 immature and adult mosquito specimens were collected and identified to the species level. In total, five mosquito species were detected, Aedes aegypti (Linnaeus), Aedes albopictus (Skuse), Aedes marshallensis (Stone and Bohart), Culex quinquefasciatus (Say), and Culex annulirostris (Skuse) (Diptera: Culicidae), a first record for RMI. The most abundant species was Ae. aegypti presumed to be the main vector of Zika virus followed by Ae. albopictus. Improved management of breeding containers through better public awareness and community engagement, mosquito surveillance and innovative mosquito control strategies using the sterile insect technique (SIT) and/or the incompatible insect technique (IIT) could help prevent outbreaks of arboviruses in the RMI.

Hydrogeology and geochemistry of the freshwater lens on Roi Namur atoll, the Republic of the Marshall Islands

Science.gov (United States)

Swarzenski, P. W.

2015-12-01

More than 90% of the world's ~400 larger atoll islands are located in the Pacific and Indian Oceans and are inhabited by ~ 3/4 million people. As ground elevations of these atolls rarely exceed a few meters above mean sea level, atoll communities must rely precariously on finite resources, including fresh water and land. When demand for water exceeds precipitation rates, fresh groundwater may provide an additional, albeit also limited resource. The shape and size of this freshwater lens is controlled by precipitation, infiltration, discharge, and groundwater pumping, as well as hydrogeologic characteristics of the aquifer, and climate. Small atoll islands like Roi Namur on Kwajalein perhaps best illustrate the strong interdependence of the islet's depositional history and geochemical transformations that occur within the shallow aquifer and its host rock. This study utilized electrical resistivity tomography (ERT) to define the position of the freshwater lens above underlying seawater and to examine scales of freshwater /saltwater mixing. Time series Rn-222 measurements were used to evaluate groundwater discharge rates to the coastal waters, and a suite of groundwater geochemical tracers, including select nutrients, trace elements, and water isotopes, were used to develop a better understanding of how the fresh water lens will likely to respond to external perturbations, such as managed recharge, and the inevitability of future marine over wash events that will be become more frequent and severe under expected sea level rise.

Neogene biostratigraphy and paleoenvironments of Enewetak Atoll, equatorial Pacific Ocean

Science.gov (United States)

Cronin, T. M.; Bybell, L.M.; Brouwers, E.M.; Gibson, T.G.; Margerum, R.; Poore, R.Z.

1991-01-01

Micropaleontologic analyses of Neogene sediments from Enewetak Atoll, Marshall Islands, provide data on the age of lagoonal deposits, stratigraphic disconformities and the paleoenvironmental and subsidence history of the atoll. Benthic foraminifers, planktic foraminifers, calcareous nannofossils and ostracodes were studied from six boreholes, the deepest penetrating 1605 feet below the lagoon floor into upper Oligocene strata. The Oligocene-Miocene boundary occurs at about 1200 ft below the lagoon floor. The early and middle Miocene is characterized by brief periods of deposition and numerous hiatuses. Ostracodes and benthic foraminifers indicate a shallow-marine reefal environment with occasional brackish water conditions. Upper Miocene and lower Pliocene deposits placed in calcareous nannofossil Zones NN9-15 and in planktic foraminifer Zones N16-19 contain species-rich benthic microfaunas which indicate alternating reefal and brackish water mangrove environments. The upper Pliocene contains at least two major depositional hiatuses that coincide with a major faunal turnover in benthic foraminiferal and ostracode assemblages. The Quaternary is characterized by benthic microfaunas similar to those of modern atoll lagoons and is punctuated by at least 11 disconformities which signify periods of low sea level. Atoll subsidence rates during the last 10 Ma averaged 30 to 40 m/m.y. ?? 1991 Elsevier Science Publishers B.V. All rights reserved.

Propiedades fisicoquímicas y sensoriales de harinas para preparar atole de amaranto

OpenAIRE

Contreras López, Elizabeth; Jaimez Ordaz, Judith; Porras Martínez, Griselda; Juárez Santillán, Luis Felipe; Añorve Morga, Javier; Villanueva Rodríguez, Socorro

2010-01-01

El atole es una bebida prehispánica mexicana tradicionalmente preparada con maíz; sin embargo cereales como el arroz y el amaranto también han sido usados empleados. El objetivo fue caracterizar las propiedades fisicoquímicas y sensoriales de una harina para preparar una bebida (atole) a base de amaranto a fin de determinar su aporte nutricional. El análisis bromatológico del atole de amaranto y de las marcas comerciales (a base de maíz y arroz) fue realizado siguiendo las técnicas de la AOAC...

78 FR 32996 - Western Pacific Fisheries; Fishing in the Marianas Trench, Pacific Remote Islands, and Rose Atoll...

Science.gov (United States)

2013-06-03

... Islands, and Rose Atoll Marine National Monuments AGENCY: National Marine Fisheries Service (NMFS..., and Rose Atoll Marine National Monuments. The intent of this rule is to implement fishery management... Islands Monument, and Proclamation 8337 established the Rose Atoll Monument. The Proclamations define the...

Plutonium radionuclides in the ground waters at Enewetak Atoll

International Nuclear Information System (INIS)

Noshkin, V.E.; Wong, K.M.; Marsh, K.; Eagle, R.; Holladay, G.; Buddemeier, R.W.

1975-01-01

In 1974 a groundwater program was initiated at Eniwetok Atoll to study systematically the hydrology and the ground water geochemistry on selected islands of the Atoll. The program provides chemical and radiochemical data for assessment of water quality on those islands designated for rehabilitation. These and other data are used to interpret the mechanisms by which radionuclides are cycled in the soil-groundwater system. Because of the international concern over the long-term buildup, availability, and transport of plutonium in the environment, this program emphasizes analysis of the element. The results of the study show that on all islands sampled, small quantities of plutonium radionuclides have migrated through the soil columns and are redistributed throughout the groundwater reservoirs. The observed maximum surface concentrations are less than 0.02 percent of the maximal recommended concentration for drinking water. Concentrations of 137 Cs are found to correlate with water freshness, but those of 239 , 240 Pu show no such relationship. The mechanisms moving 239 , 240 Pu through the ground water reservoirs are independent of the processes controlling the cycling of 137 Cs and fresh water. A reasonable linear correlation is found between mean surface-water concentrations and soil burdens. This indicates that the quantities of 239 , 240 Pu migrating to the groundwater surface layers are, to a first approximation, independent of the physical, chemical or biological characteristics of the islands. (auth)

78 FR 12015 - Western Pacific Fisheries; Fishing in the Marianas Trench, Pacific Remote Islands, and Rose Atoll...

Science.gov (United States)

2013-02-21

... Islands, and Rose Atoll Marine National Monuments AGENCY: National Marine Fisheries Service (NMFS..., Pacific Remote Islands, and Rose Atoll Marine National Monuments. The proposed rule is intended to...). Proclamation 8337 of January 6, 2009, ``Establishment of the Rose Atoll Marine National Monument'' (74 FR 1577...

78 FR 7385 - Western Pacific Fisheries; Fishing in the Marianas Trench, Pacific Remote Islands, and Rose Atoll...

Science.gov (United States)

2013-02-01

...-BA98 Western Pacific Fisheries; Fishing in the Marianas Trench, Pacific Remote Islands, and Rose Atoll... Presidential proclamations that created the Marianas Trench, Pacific Remote Islands, and Rose Atoll Marine..., 2009). Proclamation 8337 of January 6, 2009, ``Establishment of the Rose Atoll Marine National Monument...

Aerial radiological and photographic survey of eleven atolls and two islands within the Northern Marshall Islands. Dates of surveys, July-November 1978

International Nuclear Information System (INIS)

1981-06-01

An aerial radiological survey was conducted over eleven atolls and two islands within the northern Marshall Islands between September and November 1978. This survey was part of a comprehensive radiological survey, which included extensive terrestrial and marine sampling, to determine possible residual contamination which might remain as a result of the United States nuclear testing program conducted at Bikini Enewetak Atolls between 1946 and 1958. A similar survey was conducted at Enewetak Atoll in 1972. The present survey covered those atolls known to have received direct fallout from the Bravo event, conducted in March 1954 at Bikini Atoll. These included Bikini, Rongelap, Rongerik, Ailinginae, Bikar, Taka, and Utirik Atolls. In addition, several atolls and islands which might have been at the fringes of the Bravo fallout were also surveyed, including Likiep and Ailuk Atolls, Jemo and Mejit Islands, and Wotho Atoll. Ujelang Atoll, which lies approximately 200 km southwest of Enewetak, was also surveyed. Island-averaged terrestrial exposure rates in the range of 30 to 50 μR/h were observed over parts of Bikini Atoll, including Bikini Island, and over the northern part of Rongelap Atoll. Levels over southern Rongelap and over Rongerik Atoll ranged from 4 to 7 μR/h. Levels were somewhat lower at Ailinginae Atoll (approximately 2 μR/h) and at Utirik Atoll (approximately 0.7 μR/h). The variations observed were consistent with what might be expected from the fallout pattern of the Bravo event. Levels at Ailuk, Likiep, Wotho and Ujelang Atolls and at Mejit and Jemo Islands were consistent with 137 Cs activity, due to worldwide fallout, observed within the United States and at other locations in the central Pacific. These four atolls and the two islands, therefore, do not appear to have recieved any significant direct contamination from the Bravo event or the other tests conducted at Bikini and Enewetak Atolls

CRED REA Algal Assessments, Johnston Atoll 2006

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Twelve quadrats were sampled along 2 consecutively-placed, 25m transect lines as part of Rapid Ecological Assessments conducted at 17 sites at Johnston Atoll in...

CRED REA Algal Assessments Wake Atoll, 2007

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Twelve quadrats were sampled along 2 consecutively-placed, 25m transect lines as part of Rapid Ecological Assessments conducted at 12 sites at Wake Atoll in April...

Future Reef Growth Can Mitigate Physical Impacts of Sea-Level Rise on Atoll Islands

Science.gov (United States)

Beetham, Edward; Kench, Paul S.; Popinet, Stéphane

2017-10-01

We present new detail on how future sea-level rise (SLR) will modify nonlinear wave transformation processes, shoreline wave energy, and wave driven flooding on atoll islands. Frequent and destructive wave inundation is a primary climate-change hazard that may render atoll islands uninhabitable in the near future. However, limited research has examined the physical vulnerability of atoll islands to future SLR and sparse information are available to implement process-based coastal management on coral reef environments. We utilize a field-verified numerical model capable of resolving all nonlinear wave transformation processes to simulate how future SLR will modify wave dissipation and overtopping on Funafuti Atoll, Tuvalu, accounting for static and accretionary reef adjustment morphologies. Results show that future SLR coupled with a static reef morphology will not only increase shoreline wave energy and overtopping but will fundamentally alter the spectral composition of shoreline energy by decreasing the contemporary influence of low-frequency infragravity waves. "Business-as-usual" emissions (RCP 8.5) will result in annual wave overtopping on Funafuti Atoll by 2030, with overtopping at high tide under mean wave conditions occurring from 2090. Comparatively, vertical reef accretion in response to SLR will prevent any significant increase in shoreline wave energy and mitigate wave driven flooding volume by 72%. Our results provide the first quantitative assessment of how effective future reef accretion can be at mitigating SLR-associated flooding on atoll islands and endorse active reef conservation and restoration for future coastal protection.

Meteorites, atolls and whisky

Energy Technology Data Exchange (ETDEWEB)

NONE

1967-06-15

Improvements in the methods of measuring radioactive traces of elements in substances which can be hundreds of millions of years old have enabled many secrets of the remote past to be revealed. The techniques developed by nuclear scientists can also be applied to more recent times. In a symposium held in Monaco during March the discussions of radioactive dating and methods of low level counting brought references to meteorites, rocks, archaeology, coral atolls, ancient ceramics, and even whisky

Stomach nematodes (Mastophorus muris) in rats (Rattus rattus) are associated with coconut (Cocos nucifera) habitat at Palmyra Atoll.

Science.gov (United States)

Lafferty, Kevin D; Hathaway, Stacie A; Wegmann, Alex S; Shipley, Frank S; Backlin, Adam R; Helm, Joel; Fisher, Robert N

2010-02-01

Black rats ( Rattus rattus ) and their stomach nematodes (Mastophorus muris) were historically introduced to islets at Palmyra Atoll in the central Pacific Line Islands. To investigate patterns of parasitism, we trapped rats and quantified nematodes on 13 islets of various sizes and habitat types. Most rats were parasitized (59%) with an average of 12 worms per infected rat. Islet size did not greatly influence parasite population biology. Nematodes also did not appear to affect rat condition (weight to skull length). The only strong and consistent factor associated with the mean abundance of nematodes in rats was habitat (dominant cover and locally dominant plant species). Thus, nematodes were much more abundant in rats from sites dominated by coconut trees (Cocos nucifera). Coconut trees may also be an introduced species at Palmyra Atoll.

Formation of atoll garnets in the UHP eclogites of the Tso Morari Complex, Ladakh, Himalaya

Science.gov (United States)

Jonnalagadda, Mallika K.; Karmalkar, Nitin R.; Duraiswami, Raymond A.; Harshe, Shivani; Gain, Sarah; Griffin, William L.

2017-12-01

The eclogites of the Tso Morari Complex, Ladakh, NW Himalayas preserve both garnets with spectacular atoll textures, as well as whole porphyroblastic garnets. Whole garnets are euhedral, idiomorphic and enclose inclusions of amphibole, phengite and zoisite within the cores, and omphacite and quartz/coesite towards the rims. Detailed electron microprobe analyses and back-scattered electron images show well-preserved prograde zoning in the whole garnets with an increase in Mg and decrease in Ca and Mn contents from the core to the rim. The atoll garnets commonly consist of euhedral ring over island/peninsular core containing inclusions of phengite, omphacite and rarely amphibole between the core and ring. Compositional profiles across the studied atoll grains show elemental variations with higher concentrations of Ca and Mn with low Mg at the peninsula/island cores; contrary to this low Ca, Mn and high Mg is observed at the outer rings. Temperature estimates yield higher values at the Mg-rich atoll garnet outer rings compared to the atoll cores. Atoll garnet formation was favoured by infiltration of fluid formed due to breakdown of hydrous phases, and/or the release of structurally bounded OH from nominally anhydrous minerals at the onset of exhumation. Infiltration of fluids along pre-existing fracture pathways and along mineral inclusion boundaries triggered breakdown of the original garnet cores and released elements which were subsequently incorporated into the newly-grown garnet rings. This breakdown of garnet cores and inward re-growth at the outer ring produced the atoll structure. Calibrated geo-thermobarometers and mineral equilibria reflect that the Tso Morari eclogites attain peak pressures prior to peak temperatures representing a clockwise path of evolution.

Drivers of shoreline change in atoll reef islands of the Tuamotu Archipelago, French Polynesia

Science.gov (United States)

Duvat, Virginie K. E.; Salvat, Bernard; Salmon, Camille

2017-11-01

This paper increases by around 30% the sample of atoll reef islands studied from a shoreline change perspective, and covers an under-studied geographical area, i.e. the French Tuamotu Archipelago. It brings new irrefutable evidences on the persistence of reef islands over the last decades, as 77% of the 111 study islands exhibited areal stability while 15% and 8% showed expansion and contraction, respectively. This paper also addresses a key research gap by interpreting the major local drivers controlling recent shoreline and island change, i.e. tropical cyclones and seasonal swells, sediment supply by coral reefs and human activities. The 1983 tropical cyclones had contrasting impacts, depending on the shoreline indicator considered. While they generally caused a marked retreat of the stability line, the base of the beach advanced at some locations, as a result of either sediment reworking or fresh sediment inputs. The post-cyclone fair weather period was characterised by reversed trends indicating island morphological readjustment. Cyclonic waves contributed to island upwards growth, which reached up to 1 m in places, through the transfer of sediments up onto the island surface. However, the steep outer slopes of atolls limited sediment transfers to the reef flat and island system. We found that 57% of the study islands are disturbed by human activities, including 'rural' and uninhabited islands. Twenty-six percent of these islands have lost the capacity to respond to ocean-climate related pressures, including the 'capital' islands concentrating atolls' population, infrastructures and economic activities, which is preoccupying under climate change.

Coexistence of low coral cover and high fish biomass at Farquhar Atoll, Seychelles.

Science.gov (United States)

Friedlander, Alan M; Obura, David; Aumeeruddy, Riaz; Ballesteros, Enric; Church, Julie; Cebrian, Emma; Sala, Enric

2014-01-01

We report a reef ecosystem where corals may have lost their role as major reef engineering species but fish biomass and assemblage structure is comparable to unfished reefs elsewhere around the world. This scenario is based on an extensive assessment of the coral reefs of Farquhar Atoll, the most southern of the Seychelles Islands. Coral cover and overall benthic community condition at Farquhar was poor, likely due to a combination of limited habitat, localized upwelling, past coral bleaching, and cyclones. Farquhar Atoll harbors a relatively intact reef fish assemblage with very large biomass (3.2 t ha(-1)) reflecting natural ecological processes that are not influenced by fishing or other local anthropogenic factors. The most striking feature of the reef fish assemblage is the dominance by large groupers, snappers, and jacks with large (>1 m) potato cod (Epinephelus tukula) and marbled grouper (E. polyphekadion), commonly observed at many locations. Napoleon wrasse (Cheilinus undulatus) and bumphead parrotfish (Bolbometopon muricatum) are listed as endangered and vulnerable, respectively, but were frequently encountered at Farquhar. The high abundance and large sizes of parrotfishes at Farquhar also appears to regulate macroalgal abundance and enhance the dominance of crustose corallines, which are a necessary condition for maintenance of healthy reef communities. Overall fish biomass and biomass of large predators at Farquhar are substantially higher than other areas within the Seychelles, and are some of the highest recorded in the Indian Ocean. Remote islands like Farquhar Atoll with low human populations and limited fishing pressure offer ideal opportunities for understanding whether reefs can be resilient from global threats if local threats are minimized.

Coexistence of low coral cover and high fish biomass at Farquhar Atoll, Seychelles.

Directory of Open Access Journals (Sweden)

Alan M Friedlander

Full Text Available We report a reef ecosystem where corals may have lost their role as major reef engineering species but fish biomass and assemblage structure is comparable to unfished reefs elsewhere around the world. This scenario is based on an extensive assessment of the coral reefs of Farquhar Atoll, the most southern of the Seychelles Islands. Coral cover and overall benthic community condition at Farquhar was poor, likely due to a combination of limited habitat, localized upwelling, past coral bleaching, and cyclones. Farquhar Atoll harbors a relatively intact reef fish assemblage with very large biomass (3.2 t ha(-1 reflecting natural ecological processes that are not influenced by fishing or other local anthropogenic factors. The most striking feature of the reef fish assemblage is the dominance by large groupers, snappers, and jacks with large (>1 m potato cod (Epinephelus tukula and marbled grouper (E. polyphekadion, commonly observed at many locations. Napoleon wrasse (Cheilinus undulatus and bumphead parrotfish (Bolbometopon muricatum are listed as endangered and vulnerable, respectively, but were frequently encountered at Farquhar. The high abundance and large sizes of parrotfishes at Farquhar also appears to regulate macroalgal abundance and enhance the dominance of crustose corallines, which are a necessary condition for maintenance of healthy reef communities. Overall fish biomass and biomass of large predators at Farquhar are substantially higher than other areas within the Seychelles, and are some of the highest recorded in the Indian Ocean. Remote islands like Farquhar Atoll with low human populations and limited fishing pressure offer ideal opportunities for understanding whether reefs can be resilient from global threats if local threats are minimized.

Redistribution of fallout radionuclides in Enewetak Atoll lagoon sediments by callianassid bioturbation

Energy Technology Data Exchange (ETDEWEB)

McMurtry, G.M.; Schneider, R.C. (Hawaii Univ., Honolulu (USA). Hawaii Inst. of Geophysics); Colin, P.L. (Hawaii Inst. of Marine Biology, Honolulu (USA)); Buddemeier, R.W. (California Univ., Livermore (USA). Lawrence Livermore Lab.); Suchanek, T.H. (Fairleigh Dickinson Univ., St. Croix, Virgin Islands (USA). West Indies Lab.)

1985-02-21

The lagoon sediments of Enewetak Atoll in the Marshall Islands contain a large selection of fallout radionuclides as a result of 43 nuclear weapon tests conducted there between 1948 and 1958. The authors report elevated fallout radionuclide concentrations buried more deeply in the lagoon sediments and evidence of burrowing into the sediment by several species of callianassid ghost shrimp (Crustacea: Thalassinidea) which has displaced highly radioactive sediment. The burrowing activities of callianassids, which are ubiquitous on the lagoon floor, facilitate radionuclide redistribution and complicate the fallout radionuclide inventory of the lagoon.

Redistribution of fallout radionuclides in Enewetak Atoll lagoon sediments by callianassid bioturbation

International Nuclear Information System (INIS)

McMurtry, G.M.; Schneider, R.C.; Buddemeier, R.W.; Suchanek, T.H.

1985-01-01

The lagoon sediments of Enewetak Atoll in the Marshall Islands contain a large selection of fallout radionuclides as a result of 43 nuclear weapon tests conducted there between 1948 and 1958. The authors report elevated fallout radionuclide concentrations buried more deeply in the lagoon sediments and evidence of burrowing into the sediment by several species of callianassid ghost shrimp (Crustacea: Thalassinidea) which has displaced highly radioactive sediment. The burrowing activities of callianassids, which are ubiquitous on the lagoon floor, facilitate radionuclide redistribution and complicate the fallout radionuclide inventory of the lagoon. (author)

An assessment of non-communicable diseases, diabetes, and related risk factors in the Republic of the Marshall Islands, Kwajelein Atoll, Ebeye Island: a systems perspective.

Science.gov (United States)

Ichiho, Henry M; Seremai, Johannes; Trinidad, Richard; Paul, Irene; Langidrik, Justina; Aitaoto, Nia

2013-05-01

Non-communicable diseases (NCD) have been declared a health emergency in the US-affiliated Pacific Islands (USAPI). This assessment, funded by the National Institutes of Health, was conducted on Ebeye Island of Kwajelein Atoll, Republic of the Marshall Islands (RMI) to describe the burdens due to selected NCD (diabetes, heart disease, hypertension, stroke, chronic kidney disease); assess the system of service capacity and activities for service delivery, data collection, and reporting; and identify the key issues that need to be addressed. Findings reveal that the risk factors of poor diet, lack of physical activity, and lifestyle behaviors lead to overweight and obesity and subsequent NCD that impact the morbidity and mortality of the population. Population survey of the RMI show that 62.5% of the total population is overweight or obese with a dramatic increase from the 15-24 year old (10.6%) and the 25-64 year old (41.9%) age groups. The leading causes of death were septicemia, renal failure, pneumonia, cancer, and myocardial infarction. Other findings show gaps in the system of administrative, clinical, and support services to address these NCD. All health care in Ebeye is provided in one setting and there is collaboration, coordination, and communication among medical and health care providers. The Book of Protocols for the Kwajalein Atoll Health Care Bureau provides the guidelines, standards, and policy and procedures for the screening, diagnosis, and management of diabetes and other NCDs. Based on these findings, priority issues and problems to be addressed for the administrative, clinical, and data systems were identified.

A history of the people of Bikini following nuclear weapons testing in the Marshall Islands: with recollections and views of elders of Bikini Atoll.

Science.gov (United States)

Niedenthal, J

1997-07-01

The people of Bikini Atoll were moved from their homeland in 1946 to make way for the testing of 23 nuclear weapons by the United States government, beginning with the world's fourth atomic detonation. The subsequent half-century exodus of the Bikini people included a 2-y stay on Rongerik Atoll, where near starvation resulted, and a 6-mo sojourn on Kwajalein Atoll, where they lived in tents beside a runway used by the U.S. military. In 1948, they were finally relocated to Kili, a small, isolated, 200-acre island owned by the U.S. Trust Territory government. Numerous hardships have been faced there, not the least of which was the loss of skills required for self-sustenance. Located 425 miles south of Bikini, Kili Island is without a sheltered lagoon. Thus for six months of the year, fishing and sailing become futile endeavors. Because of the residual radioactive contamination from the nuclear testing, the majority of the Bikinian population still resides on Kili today. One attempt was made to resettle Bikini in the late 1960's when President Lyndon B. Johnson, on recommendations from the Atomic Energy Commission, declared Bikini Atoll safe for habitation. In 1978, however, it was discovered by the U.S. Department of Energy that in the span of only one year, some of the returned islanders were showing a 75% increase in their body burdens of 137Cs. In 1978, the people residing on Bikini were moved again, this time to a small island in Majuro Atoll. In the early 1980's, the Bikinians filed a class action lawsuit against the U.S. government for damages arising out of the nuclear testing program. Although the claim was dismissed, eventually a $90 million trust fund was established for their local government. Since then the leaders of the people of Bikini residing on Kili Island and Majuro Atoll have been confronted with the immense responsibility of determining how to clean their atoll while at the same time maintaining the health and welfare of their displaced

Shoreline changes in reef islands of the Central Pacific: Takapoto Atoll, Northern Tuamotu, French Polynesia

Science.gov (United States)

Duvat, Virginie K. E.; Pillet, Valentin

2017-04-01

Atoll reef islands are considered highly vulnerable to the impacts of climate change. While accelerated sea-level rise is expected to destabilize reef islands, ocean warming and acidification are considered as major threats to coral reef growth, which is of primary importance for the persistence of islands and of food supply to islanders. Using multi-date aerial imagery, shoreline and island changes between 1969 and 2013 were assessed on Takapoto Atoll, Northern Tuamotu region, in French Polynesia. Results show that over the 44-year study period, 41% of islands were stable in area while 33% expanded and 26% contracted. Island expansion was the dominant mode of change on the leeward side of the atoll. Tropical Cyclone Orama (category 3, 1983) contributed to shoreline and island change on the windward side of the atoll through the reworking of previous storm deposits and the injection of fresh sediments in the island system (with up to 62% of an island's land area being covered with fresh sediments). Human activities contributed significantly to shoreline and island change throughout the atoll through infrastructure construction, the removal of the indigenous vegetation from a number of islets and sediment mining.

Stomach nematodes (Mastophorus Muris) in rats (Rattus rattus) are associated with coconut (Cocos nucifera) Habitat at palmyra atoll

Science.gov (United States)

Lafferty, K.D.; Hathaway, S.A.; Wegmann, A.S.; Shipley, F.S.; Backlin, A.R.; Helm, J.; Fisher, R.N.

2010-01-01

Black rats (Rattus rattus) and their stomach nematodes (Mastophorus muris) were historically introduced to islets at Palmyra Atoll in the central Pacific Line Islands. To investigate patterns of parasitism, we trapped rats and quantified nematodes on 13 islets of various sizes and habitat types. Most rats were parasitized (59) with an average of 12 worms per infected rat. Islet size did not greatly influence parasite population biology. Nematodes also did not appear to affect rat condition (weight to skull length). The only strong and consistent factor associated with the mean abundance of nematodes in rats was habitat (dominant cover and locally dominant plant species). Thus, nematodes were much more abundant in rats from sites dominated by coconut trees (Cocos nucifera). Coconut trees may also be an introduced species at Palmyra Atoll. ?? American Society of Parasitologists 2010.

Larval dispersal modeling of pearl oyster Pinctada margaritifera following realistic environmental and biological forcing in Ahe atoll lagoon.

Directory of Open Access Journals (Sweden)

Yoann Thomas

Full Text Available Studying the larval dispersal of bottom-dwelling species is necessary to understand their population dynamics and optimize their management. The black-lip pearl oyster (Pinctada margaritifera is cultured extensively to produce black pearls, especially in French Polynesia's atoll lagoons. This aquaculture relies on spat collection, a process that can be optimized by understanding which factors influence larval dispersal. Here, we investigate the sensitivity of P. margaritifera larval dispersal kernel to both physical and biological factors in the lagoon of Ahe atoll. Specifically, using a validated 3D larval dispersal model, the variability of lagoon-scale connectivity is investigated against wind forcing, depth and location of larval release, destination location, vertical swimming behavior and pelagic larval duration (PLD factors. The potential connectivity was spatially weighted according to both the natural and cultivated broodstock densities to provide a realistic view of connectivity. We found that the mean pattern of potential connectivity was driven by the southwest and northeast main barotropic circulation structures, with high retention levels in both. Destination locations, spawning sites and PLD were the main drivers of potential connectivity, explaining respectively 26%, 59% and 5% of the variance. Differences between potential and realistic connectivity showed the significant contribution of the pearl oyster broodstock location to its own dynamics. Realistic connectivity showed larger larval supply in the western destination locations, which are preferentially used by farmers for spat collection. In addition, larval supply in the same sectors was enhanced during summer wind conditions. These results provide new cues to understanding the dynamics of bottom-dwelling populations in atoll lagoons, and show how to take advantage of numerical models for pearl oyster management.

Radiological survey of plants, animals, and soil at five atolls in the Marshall Islands; September--October 1976

International Nuclear Information System (INIS)

Nelson, V.A.

1979-01-01

The Division of Operational Safety's portion of the Pacific Radioecology Program began in 1974 and it is a continuing program to determine the kinds and amounts of radionuclides distributed in the foods, plants, animals, and soils of the Central Pacific, especially the Marshall Islands. As part of this program, Wotje, Ailuk, Utirik, Rongelap, and Bikini tolls were visited in 1976 and samples collected. Results of the radiometric analyses of the samples are presented. Results of these analyses indicate that 90 Sr and 137 Cs are predominant in the terrestrial environment and, in addition, 241 Am and 239 240 Pu are also important in the soil from Rongelap and Bikini Atols. Naturally occurring 40 K is the predominant radionuclide in marine organisms, while 60 Co is significant in the tridacnid clams. Amounts of radioactivity vary with distance from the Bikini test site and in relation to the fallout pattern from the March 1954 Bravo test. Thus, samples from Bikini Atol had the greatest amounts of radioactivity while the northern islands of Rongelap had slightly lower amounts. The southern islands of Rongelap Atoll and Utirik Atoll had intermediate amounts of radioactivity while Ailuk and Wotje atolls had the least radioactivity of the atolls visited

2006 Reson 8101ER Multibeam Sonar Data from Cruise AHI-06-09 - Kure Atoll, Pearl and Hermes Atoll and Kauai Island

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Reson 8101ER multibeam Data were collected from 23 June to 19 July 2006 aboard NOAA Survey Launch Acoustic Habitat Investigator (AHI) at Kure Atoll, Pearl and Hermes...

Geohydrology of Enewetak Atoll islands and reefs

International Nuclear Information System (INIS)

Buddemeier, R.W.

1981-01-01

Extensive tidal studies in island wells and the lagoon at Enewetak Atoll have shown that island ground water dynamics are controlled by a layered aquifer system. The surface aquifer of unconsolidated Holocene material extends to a depth of approximately 15 m, and has a hydraulic conductivity K = 60 m/day. From 15 to 60 m (approximate lagoon depth) the reef structure consists of successive layers of altered Pleistocene materials, with bulk permeability substantially higher than that of the surface aquifer. Because of wave set-up over the windward reef and the limited pass area for outflow at the south end of the atoll, lagoon tides rise in phase with the ocean tides but fall later than the ocean water level. This results in a net lagoon-to-ocean head which can act as the driving force for outflow through the permeable Pleistocene aquifer. This model suggests that fresh water, nutrients or radioactive contaminants found in island ground water or reef interstitial water may be discharged primarily into the ocean rather than the lagoon. Atoll island fresh water resources are controlled by recharge, seawater dilution due to vertical tidal mixing between the surface and deeper aquifers, and by loss due to entrainment by the outflowing water in the deeper aquifers. Estimated lagoon-ot-ocean transit times through the deep aquifer are on the order of a few years, which corresponds well to the freshwater residence time estimates based on inventory and recharge. Islands in close proximity to reef channels have more fresh ground water than others, which is consistent with a locally reduced hydraulic gradient and slower flow through the Pleistocene aquifers

Modelling detrital coral grain-size and age: Insights from sediment abrasion process of Yongle Atoll of South China Sea

Science.gov (United States)

Li, Y.; Zou, X.; Ge, C.; Tan, M.; Wang, C.

2017-12-01

Reef islands situated on the rims of atolls are composed almost exclusively of bioclastic materials locally supplied from adjacent coral reefs. Major skeletal component of these islands include coral, coralline algae, mollusks and foraminifera, produced in adjacent reefs. As the island builder, the bioclastic material is the sedimentary products, which also is the point of penetration to decipher the process. The bioclast of coral islands decrease in size with the transportation process. The grain-size provides a proxy record for the abrasion history of the unconsolidated sediment. The 230Th age of coral record the abrasion time. We hereby present a model to calculate the abrasion rate based on the data of 230Th age and grain-size of Yongle Atoll of Xisha Island, South China Sea. The grain size pattern in Yongle Atoll environment have confirm that the coral article diminution behave exponentially. The sediment composition of Yongle Atoll is identified, coral is dominant sediment constituent and the Th230 age is shown to exert an age distribution characteristics of coral detritus. We illustrate this approach by calculate the coral debris age of Xude Atoll, which located near the Yongle Atoll and then by comparing actual measured age and calculated age and to explore the dependence of the model. Observed 230 Th ages are well matched by predicted ages for medium age sediment. A poorer match for young and old sediment may result from some combination of large analytical uncertainties in the detrital ages and inhomogeneous erosion rates within the atoll. Such mismatches emphasize the need for more accurate kinematic models and for sampling strategies that are adapted to atoll-specific geologic and geomorphic conditions. Results presented constitute important new insights into regional sediment abrasion processed and on the evolution of coral atoll islands.

Collection and processing of plant, animal and soil samples from Bikini, Enewetak and Rongelap Atolls

Energy Technology Data Exchange (ETDEWEB)

Stuart, M.L.

1995-09-01

The United States used the Marshall Islands for its nuclear weapons program testing site from 1946 to 1958. The BRAVO test was detonated at Bikini Atoll on March 1, 1954. Due to shifting wind conditions at the time of the nuclear detonation, many of the surrounding Atolls became contaminated with fallout (radionuclides carried by the wind currents). Lawrence Livermore National Laboratory`s (LLNL) Marshall Islands Project has been responsible for the collecting, processing, and analyzing of food crops, vegetation, soil, water, animals, and marine species to characterize the radionuclides in the environment, and to estimate dose at atolls that may have been contaminated. Tropical agriculture experiments reducing the uptake of {sup 137}Cs have been conducted on Bikini Atoll. The Marshall Islands field team and laboratory processing team play an important role in the overall scheme of the Marshall Islands Dose Assessment and Radioecology Project. This report gives a general description of the Marshall Islands field sampling and laboratory processing procedures currently used by our staff.

Collection and processing of plant, animal and soil samples from Bikini, Enewetak and Rongelap Atolls

International Nuclear Information System (INIS)

Stuart, M.L.

1995-09-01

The United States used the Marshall Islands for its nuclear weapons program testing site from 1946 to 1958. The BRAVO test was detonated at Bikini Atoll on March 1, 1954. Due to shifting wind conditions at the time of the nuclear detonation, many of the surrounding Atolls became contaminated with fallout (radionuclides carried by the wind currents). Lawrence Livermore National Laboratory's (LLNL) Marshall Islands Project has been responsible for the collecting, processing, and analyzing of food crops, vegetation, soil, water, animals, and marine species to characterize the radionuclides in the environment, and to estimate dose at atolls that may have been contaminated. Tropical agriculture experiments reducing the uptake of 137 Cs have been conducted on Bikini Atoll. The Marshall Islands field team and laboratory processing team play an important role in the overall scheme of the Marshall Islands Dose Assessment and Radioecology Project. This report gives a general description of the Marshall Islands field sampling and laboratory processing procedures currently used by our staff

Radiological survey of plants, animals, and soil at Christmas Island and seven atolls in the Marshall Islands. Progress report for 1974--1975

International Nuclear Information System (INIS)

Nelson, V.A.

1977-01-01

The Division of Operational Safety or DOS (now Safety Standards and Compliance) portion of the Laboratory of Radiation Ecology (LRE) Pacific Radiocology Program (formerly Johnston Atoll Program) began on 1 July 1974 and is continuing. The purpose of this program is to determine the kinds and amounts of radionuclides distributed in the foods, plants, animals, and soil of the Central Pacific, especially the Marshall Islands. Five field trips were conducted for this program between April 1974 and August 1975, and about 600 samples were collected. Results of the analyses indicate that 90 Sr and 137 Cs are dominant in the terrestrial environment and, in addition, 241 Am and /sup 239,240/Pu are also important in the soil from Bikini and Rongelap atolls. Cobalt-60 and 55 Fe are predominant in the marine environment together with naturally occurring 40 K. Amounts of radioactivity vary between atolls and between islands within an atoll in relation to the distance from the nuclear weapons test sites. Bikini atoll has the highest amounts of radioactivity, but the northern islands of Rongelap Atoll have only slightly lower amounts. Rongerik and Ailinginae atolls and the southern islands of Rongelap Atoll have similar amounts of radioactivity which are lower than Bikini by factors of 5 to 10 or more. Values at Utirik Atoll are lower still, but are higher than amounts at Wotho and Kwajalein atolls. Christmas Island in the Line Islands has the least amount of radioactivity of the areas surveyed for this report

beta- and gamma-Comparative dose estimates on Eniwetok Atoll

Energy Technology Data Exchange (ETDEWEB)

Crase, K.W.; Gudiksen, P.H.; Robison, W.L.

1982-05-01

Eniwetok Atoll is one of the Pacific atolls used for atmospheric testing of U.S. nuclear weapons. Beta dose and gamma-ray exposure measurements were made on two islands of the Eniwetok Atoll during July-August 1976 to determine the beta and low energy gamma-contribution to the total external radiation doses to the returning Marshallese. Measurements were made at numerous locations with thermoluminescent dosimeters (TLD), pressurized ionization chambers, portable NaI detectors, and thin-window pancake GM probes. Results of the TLD measurements with and without a beta-attenuator indicate that approx. 29% of the total dose rate at 1 m in air is due to beta- or low energy gamma-contribution. The contribution at any particular site, however, is somewhat dependent on ground cover, since a minimal amount of vegetation will reduce it significantly from that over bare soil, but thick stands of vegetation have little effect on any further reductions. Integral 30-yr external shallow dose estimates for future inhabitants were made and compared with external dose estimates of a previous large scale radiological survey (En73). Integral 30-yr shallow external dose estimates are 25-50% higher than whole body estimates. Due to the low penetrating ability of the beta's or low energy gamma's, however, several remedial actions can be taken to reduce the shallow dose contribution to the total external dose.

Palmyra Atoll Quickbird II Seafloor Mosaic (1.8m)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat maps of the nearshore marine environment of Pamyra Atoll were created by visual interpretation of remotely sensed imagery. The objective of this...

Palmyra Atoll Quickbird II Terrestrial Mosaic (1.8m)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat maps of the nearshore marine environment of Pamyra Atoll were created by visual interpretation of remotely sensed imagery. The objective of this...

Review at Bikini Atoll. Assessing radiological conditions at Bikini Atoll and the prospects for resettlement

International Nuclear Information System (INIS)

Stegnar, P.

1998-01-01

Some testing during the development of the atomic bomb was done in countries that do not have the infrastructure and expertise for evaluating any associated radiation risks. In such cases, outside expertise is needed to obtain independent advice about the radiological situation caused by residual radioactive material from nuclear testing. The IAEA has been requested by the governments of a number of its Member States to provide assistance in this context. Among the former nuclear test sites which the IAEA has reviewed is the Bikini Atoll of the Marshall Islands. Based on its review, the IAEA Advisory Group determined that no further corroboration of the measurements and assessments of the radiological conditions at Bikini Atoll is necessary. The data that have been collected are of sufficient quality to allow an appropriate evaluation to be performed. The limited IAEA monitoring of the area provided a good quality assurance verification of the previously collected data. It was recommended that Bikini Island should not be permanently resettled under the present radiological conditions. This recommendation was based on the assumption that persons resettling on the island would consume a diet of entirely locally produced food. The radiological data support that if a diet of this type were permitted, it could lead to an annual effective dose of about 15 mSv. This level was judged to require intervention of some type for radiation protection purposes

Coastal groundwater exchange on a small Pacific atoll island: Roi Namur, Republic of the Marshall Islands

Science.gov (United States)

Oberle, Ferdinand K. J.; Swarzenski, Peter W.; Storlazzi, Curt

2017-04-01

Atoll islands, most of which only average 1-2 meters above today's sea level, provide a tremendous natural laboratory in which to study and better understand the intensifying impacts of high rates of sea-level rise on tropical reef-lined islands globally due to their unique geologic structure and limited water supply. Groundwater resources of atolls are typically minimal due to the low elevation and small surface area of the islands and are also subject to recurring droughts, and more frequent, storm-driven seawater overwash events. Although groundwater is the principal means of freshwater storage on atoll islands and is a major factor in determining the overall sustainability of island communities, hydrological data on how an aquifer will response to changes in sea-level rise or storm-driven overwash remain limited. We here present high-resolution time series hydrogeological and geochemical data to determine the role of the atoll's carbonate geology, land use, and atmospheric and oceanographic forcing in driving coastal groundwater exchange on the island of Roi Namur on Kwajalein Atoll in the Republic of the Marshall Islands. This information can provide new estimates on the recovery and resilience of coastal groundwater resources on such islands to expected climate change-driven perturbations.

The shark assemblage at French Frigate Shoals atoll, Hawai'i: species composition, abundance and habitat use.

Science.gov (United States)

Dale, Jonathan J; Stankus, Austin M; Burns, Michael S; Meyer, Carl G

2011-02-10

Empirical data on the abundance and habitat preferences of coral reef top predators are needed to evaluate their ecological impacts and guide management decisions. We used longline surveys to quantify the shark assemblage at French Frigate Shoals (FFS) atoll from May to August 2009. Fishing effort consisted of 189 longline sets totaling 6,862 hook hours of soak time. A total of 221 sharks from 7 species were captured, among which Galapagos (Carcharhinus galapagensis, 36.2%), gray reef (Carcharhinus amblyrhynchos, 25.8%) and tiger (Galeocerdo cuvier, 20.4%) sharks were numerically dominant. A lack of blacktip reef sharks (Carcharhinus melanopterus) distinguished the FFS shark assemblage from those at many other atolls in the Indo-Pacific. Compared to prior underwater visual survey estimates, longline methods more accurately represented species abundance and composition for the majority of shark species. Sharks were significantly less abundant in the shallow lagoon than adjacent habitats. Recaptures of Galapagos sharks provided the first empirical estimate of population size for any Galapagos shark population. The overall recapture rate was 5.4%. Multiple closed population models were evaluated, with Chao M(h) ranking best in model performance and yielding a population estimate of 668 sharks with 95% confidence intervals ranging from 289-1720. Low shark abundance in the shallow lagoon habitats suggests removal of a small number of sharks from the immediate vicinity of lagoonal islets may reduce short-term predation on endangered monk seal (Monachus schauinslandi) pups, but considerable fishing effort would be required to catch even a small number of sharks. Additional data on long-term movements and habitat use of sharks at FFS are required to better assess the likely ecological impacts of shark culling.

76 FR 10621 - Palmyra Atoll National Wildlife Refuge, U.S. Pacific Island Territory; Nonnative Rat Eradication...

Science.gov (United States)

2011-02-25

... any of the following methods. For information on viewing or obtaining the documents, see ``Public... species in their natural setting on the Atoll. The Pacific Remote Islands Marine National Monument... eliminate black rats from Palmyra Atoll. Public Availability of the DEIS The DEIS is available for viewing...

77 FR 61426 - Rose Atoll National Wildlife Refuge, American Samoa; Draft Comprehensive Conservation Plan and...

Science.gov (United States)

2012-10-09

... DEPARTMENT OF THE INTERIOR Fish and Wildlife Service [FWS-R1-R-2012-N171; 1265-0000-10137-S3] Rose... Rose Atoll National Wildlife Refuge (NWR/refuge) for public review and comment. In the Draft CCP/EA, [email protected] . Include ``Rose Atoll National Wildlife Refuge Draft CCP/EA'' in the subject line of the...

Arthropods of Rose Atoll with special reference to ants and Pulvinaria Urbicola Scales (Hempitera Coccidae) on Pisonia Grandis trees

Science.gov (United States)

Banko, Paul C.; Peck, Robert W.; Pendleton, Frank; Schmaedick, Mark; Ernsberger, Kelsie

2014-01-01

Rose Atoll, at the eastern end of the Samoan Archipelago, is a small but important refuge for seabirds, shorebirds, and sea turtles. While the vertebrate community is relatively well-studied, the terrestrial arthropod fauna, and its role in ecosystem function, are poorly known. Arthropods may be influencing the decline of Pisonia grandis, an ecologically important tree that once dominated the 6.6 ha of land on Rose Atoll. Reasons for the decline are not fully understood but a facultative relationship between two invasive arthropods, the soft scale Pulvinaria urbicola and ants, likely has contributed to tree death. The primary objectives of this study were to systematically survey the terrestrial arthropod fauna and identify ant species that tend scales on Pisonia. Using an array of standard arthropod collecting techniques, at least 73 species from 20 orders were identified, including nine ant species. Of the ants collected, only Tetramorium bicarinatum and T. simillimum were observed tending scales on Pisonia. No known natural enemies of Pulvinaria scales were found, suggesting little predation on scale populations. Treatment of Pisonia with the systemic insecticide imidacloprid failed to eliminate Pulvinaria scales, although short-term suppression apparently occurred. The arthropod fauna of Rose Atoll is dominated by exotic species that likely have a significant impact on the structure and function of the island’s ecosystem.

Bikini Atoll ionizing radiation survey - May 1985 - May 1986

International Nuclear Information System (INIS)

Shingleton, K.L.; Cate, J.L.; Trent, M.G.; Robison, W.L.

1988-01-01

Between 1946 and 1958, the United States conducted 23 nuclear tests at the Bikini Atoll in the Marshall Islands. The single largest detonation was the Bravo test, which resulted in extensive radioactive contamination of a number of islands and prevented the timely resettlement of the native population. Since 1958, many studies have been conducted to assess clean up options and the internal and external radiation doses the Bikinians would likely receive, should they resettle the islands. Although the external dose rates from β and γ radiation have been previously determined by aerial and ground measurement techniques, technical constraints limited the assessment of external β dose rates from the Cs-137 and Sr-90/Y-90 contamination on the islands. Now, because of the recent development of very thin thermoluminescent dosimeters (TLDs), these external β dose rates can be measured

Resettlement of Bikini Atoll: US nuclear test site

International Nuclear Information System (INIS)

Robison, W.; Conrado, C.; Stuart, M.; Stoker, A.; Hamilton, T.

1999-01-01

Bikini Atoll was one of two sites in the Marshall Islands that were used in the 1950's by the United States for testing nuclear weapons. The testing produced widespread radioactive contamination in Bikini and much of the Northern Marshall Islands. The Bikini people, relocated in 1946 before the test program began, have long desired to return to their homeland. Coral soil on Bikini Island makes cesium-137 ( 137 Cs) much more available for plant uptake than do soils of North America and Europe. Hence, when locally grown crops mature and become available for consumption, the resulting body burden of 137 Cs and the associated doses to humans exceeds federal guidelines. The dose from the terrestrial food ingestion pathway dominates all other pathways and contributes about 90% of the total dose to returning residents. We are, therefore, involved in cost-effective efforts to reduce the dose associated with resettlement. We have evaluated several measures, in addition to soil removal, to eliminate 137 Cs from the soil and to reduce its uptake into food crops. The most effective, and the easiest to implement, is the application of potassium to the atoll soils. A dramatic reduction in 137 Cs occurs in tropical fruits after applications of potassium-rich fertilizer to experimental soil plots. This treatment reduces the associated ingestion dose to about 5% of the pre-treatment levels, and this option avoids removal of the organic-rich surface soils. In addition, the added potassium increases plant productivity. We are now focusing on determining the duration of the effects of potassium treatment on 137 Cs uptake into plants, and the rate of environmental loss of 137 Cs in the atoll ecosystem. (author)

Lingering radioactivity at the Bikini and Enewetak Atolls.

Science.gov (United States)

Buesseler, Ken O; Charette, Matthew A; Pike, Steven M; Henderson, Paul B; Kipp, Lauren E

2018-04-15

We made an assessment of the levels of radionuclides in the ocean waters, seafloor and groundwater at Bikini and Enewetak Atolls where the US conducted nuclear weapons tests in the 1940's and 50's. This included the first estimates of submarine groundwater discharge (SGD) derived from radium isotopes that can be used here to calculate radionuclide fluxes in to the lagoon waters. While there is significant variability between sites and sample types, levels of plutonium ( 239,240 Pu) remain several orders of magnitude higher in lagoon seawater and sediments than what is found in rest of the world's oceans. In contrast, levels of cesium-137 ( 137 Cs) while relatively elevated in brackish groundwater are only slightly higher in the lagoon water relative to North Pacific surface waters. Of special interest was the Runit dome, a nuclear waste repository created in the 1970's within the Enewetak Atoll. Low seawater ratios of 240 Pu/ 239 Pu suggest that this area is the source of about half of the Pu in the Enewetak lagoon water column, yet radium isotopes suggest that SGD from below the dome is not a significant Pu source. SGD fluxes of Pu and Cs at Bikini were also relatively low. Thus radioactivity associated with seafloor sediments remains the largest source and long term repository for radioactive contamination. Overall, Bikini and Enewetak Atolls are an ongoing source of Pu and Cs to the North Pacific, but at annual rates that are orders of magnitude smaller than delivered via close-in fallout to the same area. Copyright © 2017 The Authors. Published by Elsevier B.V. All rights reserved.

3 CFR 8337 - Proclamation 8337 of January 6, 2009. Establishment of the Rose Atoll Marine National Monument

Science.gov (United States)

2010-01-01

... of the Rose Atoll Marine National Monument 8337 Proclamation 8337 Presidential Documents Proclamations Proclamation 8337 of January 6, 2009 Proc. 8337 Establishment of the Rose Atoll Marine National... 130 nautical miles east-southeast of Pago Pago Harbor, American Samoa, lies Rose Atoll—the easternmost...

The northernmost coral frontier of the Maldives: The coral reefs of Ihavandippolu Atoll under long-term environmental change.

Science.gov (United States)

Tkachenko, Konstantin S

2012-12-01

Ihavandippolu, the northernmost atoll of the Maldives, experienced severe coral bleaching and mortality in 1998 followed by several bleaching episodes in the last decade. Coral cover in the 11 study sites surveyed in July-December of 2011 in the 3-5 m depth range varied from 1.7 to 51%. Reefs of the islands located in the center of Ihavandippolu lagoon have exhibited a very low coral recovery since 1998 and remain mostly degraded 12 years after the impact. At the same time, some reefs, especially in the inner part of the eastern ring of the atoll, demonstrate a high coral cover (>40%) with a dominance of branching Acropora that is known to be one of the coral genera that is most susceptible to thermal stress. The last severe bleaching event in 2010 resulted in high coral mortality in some sites of the atoll. Differences in coral mortality rates and proportion between "susceptible" and "resistant" taxa in study sites are apparently related to long-term adaptation and local hydrological features that can mitigate thermal impacts. Abundant herbivorous fish observed in the atoll prevent coral overgrowth by macroalgae even on degraded reefs. Despite the frequent influence of temperature anomalies and having less geomorphologic refuges for coral survivals than other larger Maldivian atolls, a major part of observed coral communities in Ihavandippolu Atoll exhibits high resilience and potential for further acclimatization to a changing environment. Copyright © 2012 Elsevier Ltd. All rights reserved.

Reassessment of the potential radiological doses for residents resettling Enewetak Atoll

International Nuclear Information System (INIS)

Robison, W.L.; Phillips, W.A.; Mount, M.E.; Clegg, B.R.; Conrado, C.L.

1980-01-01

The purpose of this report is to refine the dose predictions, subsequent to the cleanup effort, for alternate living patterns proposed for resettlement of Enewetak Atoll. The most recent data developed from projects at Enewetak and Bikini Atolls for concentration and uptake of Cs, Sr, Pu, and Am were used in conjunction with recent dietary information and current dose models to predict annual dose rates and 30- and 50-y integral doses (dose commitments). The terrestrial food chain in the most significant exposure pathway - it contributes more than 50% of the total dose - and external gamma exposure is the second most significant pathway. Other pathways evaluated are the marine food chain, drinking water, and inhalation

CRED REA Algal Assessments, Johnston Atoll 2004 (NODC Accession 0010352)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Twelve quadrats were sampled along 2 consecutively-placed, 25m transect lines as part of Rapid Ecological Assessments conducted at 12 sites at Johnston Atoll in...

Monogenea of fishes from the lagoon flats of Palmyra Atoll in the Central Pacific

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Victor Manuel Vidal-Martinez

2017-11-01

Full Text Available A survey of the monogeneans of fishes from the lagoon flats of Palmyra Atoll detected 16 species already reported from the Indo-West Pacific faunal region. A total of 653 individual fish from 44 species were collected from the sand flats bordering the lagoon of the atoll. Eighteen species of fish were infected with monogeneans. The monogenean species recovered were: Benedenia hawaiiensis on Acanthurus xanthopterus, Chaetodon auriga, Chaetodon lunula, Mulloidichthys flavolineatus, Pseudobalistes flavimarginatus and Rhinecanthus aculeatus; Ancyrocephalus ornatus on Arothron hispidus; Euryhaliotrema annulocirrus on Chaetodon auriga and Chaetodon lunula; Euryhaliotrema chrysotaeniae on Lutjanus fulvus; Euryhaliotrema grandis on Chaetodon auriga and Chaetodon lunula; Haliotrema acanthuri on Acanthurus triostegus; Haliotrema aurigae on Chaetodon auriga and Chaetodon lunula; Haliotrema dempsteri on Acanthurus xanthopterus; Haliotrema minutospirale on Mulloidichthys flavolineatus; Haliotrematoides patellacirrus on Lutjanus monostigma; Neohaliotrema bombini on Abudefduf septemfasciatus and Abudefduf sordidus; Acleotrema girellae and Acleotrema parastromatei on Kyphosus cinerascens; Cemocotylella elongata on Caranx ignobilis, Caranx melampygus and Caranx papuensis; Metamicrocotyla macracantha on Crenimugil crenilabris; and Pseudopterinotrema albulae on Albula glossodonta. All these monogenean–host combinations represent new geographical records. The monogenean species composition of the Palmyra Atoll is similar to that of the Hawaiian Islands. However, the number of species recovered was lower compared with other localities within the Indo-West Pacific, perhaps due to the geographical isolation of Palmyra Atoll.

Composition, distribution and risk assessment of organochlorine pesticides in soils from the Midway Atoll, North Pacific Ocean

Energy Technology Data Exchange (ETDEWEB)

Ge, Jing [Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074 (China); Woodward, Lee Ann [U.S. Fish and Wildlife Service, Pacific Reefs NWRC, Honolulu, HI 96850 (United States); Li, Qing X., E-mail: qingl@hawaii.edu [Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI 96822 (United States); Wang, Jun, E-mail: wangjun@wbgcas.cn [Key Laboratory of Aquatic Botany and Watershed Ecology, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074 (China); Department of Molecular Biosciences and Bioengineering, University of Hawaii at Manoa, Honolulu, HI 96822 (United States)

2013-05-01

Concentrations of legacy organochlorine pesticides (OCPs), including dichlorodiphenyltrichloroethane (DDT) and its metabolites (e.g., DDE and DDD), and hexachlorocyclohexanes (HCHs) were determined in 111 soil samples from the Midway Atoll. OCPs were found in all samples analyzed, with predominance of α-HCH, p,p′-DDD and p,p′-DDT. The total concentrations ranged from 0 to 127 ng g{sup −1} with a median concentration of 17 ng g{sup −1} for HCHs and 1.4 to 643 ng g{sup −1} with a median concentration of 168 ng g{sup −1} for DDTs. The possible degradation pathways and potential sources of DDTs and HCHs were investigated. The total concentrations of DDTs and HCHs were used to evaluate the cancer risk probabilities in humans via ingestion, dermal contact and inhalation of soil particles. Very low cancer risk was found in all soil samples caused by ΣDDTs and ΣHCHs. - Highlights: • Contamination levels of DDTs and HCHs were studied in the Midway Atoll, North Pacific Ocean. • Potential sources of DDTs and HCHs in soils of the Midway Atoll were investigated. • Possible degradation modes of o,p′-DDT in soils of the Midway Atoll were analyzed. • Cancer risks of DDTs and HCHs in soils of the Midway Atoll were assessed.

The decision-making process in returning relocated populations to the Marshall Islands

International Nuclear Information System (INIS)

Bell, T.

1998-01-01

Between 1946 and 1958, the United States conducted a nuclear weapons testing program in the northern Marshall Islands, detonating 66 nuclear weapons at Bikini and Enewetak. The indigenous populations at Bikini and Enewetak Atolls were evacuated prior to the initiation of testing at these respective atolls. Fallout in these cases were typically distributed within a few miles of the detonation. The 15-megaton thermonuclear Bravo device at Bikini resulted in the inadvertent deposition of radioactive fallout on the 253 inhabitants of Rongelap and Utirik atolls. The Rongelap and Utirik populations had not been evacuated prior to this test designed to detonate at about 5 megatons. 65 Rongelap individuals received whole body fallout doses of about 1.8 sievert (180 rem), 18 Ailinginae individuals received whole body doses of about 0.7 sievert (70 rem), and 157 Marshallese individuals at Utirik received a whole body fallout doses of about 0.14 sievert (14 rem.) The U.S. Department of Energy (DOE) and its predecessor agencies have provided special medical surveillance and treatment of radiation-related injury and illness for the surviving members of the populations of Rongelap and Utirik exposed during the 'Bravo' test. In addition, DOE conducts environmental and radiological monitoring and performs agricultural research studies to characterize the radioactivity remaining at the four atolls of Bikini in the aftermath of the 1946-58 U.S. nuclear testing program. (R.P.)

Marshall Islands Fringing Reef and Atoll Lagoon Observations of the Tohoku Tsunami

Science.gov (United States)

Ford, Murray; Becker, Janet M.; Merrifield, Mark A.; Song, Y. Tony

2014-12-01

The magnitude 9.0 Tohoku earthquake on 11 March 2011 generated a tsunami which caused significant impacts throughout the Pacific Ocean. A description of the tsunami within the lagoons and on the surrounding fringing reefs of two mid-ocean atoll islands is presented using bottom pressure observations from the Majuro and Kwajalein atolls in the Marshall Islands, supplemented by tide gauge data in the lagoons and by numerical model simulations in the deep ocean. Although the initial wave arrival was not captured by the pressure sensors, subsequent oscillations on the reef face resemble the deep ocean tsunami signal simulated by two numerical models, suggesting that the tsunami amplitudes over the atoll outer reefs are similar to that in deep water. In contrast, tsunami oscillations in the lagoon are more energetic and long lasting than observed on the reefs or modelled in the deep ocean. The tsunami energy in the Majuro lagoon exhibits persistent peaks in the 30 and 60 min period bands that suggest the excitation of closed and open basin normal modes, while energy in the Kwajalein lagoon spans a broader range of frequencies with weaker, multiple peaks than observed at Majuro, which may be associated with the tsunami behavior within the more irregular geometry of the Kwajalein lagoon. The propagation of the tsunami across the reef flats is shown to be tidally dependent, with amplitudes increasing/decreasing shoreward at high/low tide. The impact of the tsunami on the Marshall Islands was reduced due to the coincidence of peak wave amplitudes with low tide; however, the observed wave amplitudes, particularly in the atoll lagoon, would have led to inundation at different tidal phases.

CRED REA Algal Assessments, Palmyra Atoll 2004 (NODC Accession 0010352)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Twelve quadrats were sampled along 2 consecutively-placed, 25m transect lines as part of Rapid Ecological Assessments conducted at 8 sites at Palmyra Atoll in the US...

Dongsha Atoll: A potential thermal refuge for reef-building corals in the South China Sea.

Science.gov (United States)

Tkachenko, Konstantin S; Soong, Keryea

2017-06-01

Dongsha Atoll (also known as the Pratas Islands), the northernmost atoll in the South China Sea, experiences two contrasting physical phenomena: repetitive anomalies of the sea surface temperature exceeding the coral bleaching threshold and regular effects of the world's strongest internal waves resulting in the rhythmic upwelling of cold deep waters at the outer reef slopes of the atoll. This unique combination may result in significant differences in coral species composition and structure between the lagoon and forereef. Surveys conducted in August-September 2016 at 12 study sites in the 2-15 m depth range at Dongsha Atoll revealed a clear spatial separation between 'thermally-susceptible' stony coral genera, including Acropora, Pocillopora and Montipora, which mainly inhabited the forereef, and 'thermally-resistant' genera, including massive Porites, foliaceous Echinopora, Pavona and Turbinaria, which mainly resided in the lagoon. The mean coral cover and species richness on the forereef were respectively 1.8 and 1.4 times higher than those in the lagoon (61.3% and 98 species on the forereef vs. 34.2% and 69 species in the lagoon). Coral mortality rates, expressed as the ratio of dead to live stony corals, showed the same pattern (0.4 in the lagoon vs. 0.009 on the forereef). Furthermore, in a laboratory experiment, 'thermally-susceptible' taxa from the lagoon, (e.g. Pocillopora verrucosa and P. damicornis), exhibited higher resistance to bleaching than did their counterparts from the forereef. The present findings indicate that Dongsha Atoll is a potential thermal refuge for reef-building corals in the northern South China Sea and reveal the development of resilience and resistance to bleaching in coral communities of the lagoon. Copyright © 2017 Elsevier Ltd. All rights reserved.

The natural history of Caroline Atoll, Southern Line Islands. Part I. History, physiography, botany, and isle descriptions

Science.gov (United States)

Kepler, A.K.; Kepler, C.B.

1994-01-01

conclusion: Lushly wooded Caroline Atoll, with the majority of its 39 islets (399 ha of land) either in near-pristine condition or having recovered remarkably from past disturbance, is one of the least spoiled atolls in the Pacific. Uninhabited, it harbors plant ecosystems and breeding seabirds (Pt. II) of national and international importance. Its marine and terrestrial ecosystems are prime outdoor ecological laboratories for research on geological processes including ground water, sea level changes, the dynamics of motu formation, fish poisoning, and numerous facets of ecology including plant succession and Pisonia growth rates. Caroline boasts prime coral reefs thickly studded with Tridacna clams, substantial numbers of coconut crabs, breeding sites for green turtles, wintering grounds for shorebirds including the rare Bristle-thighed Curlew, ancient Tuamotuan marae, and a crystalline, unpolluted lagoon. The variety, abundance, and quality of its flora and fauna qualify it for status as an officially recognized international preserve (Pt. II, Sect. G). Efforts toward its conservation have thus far been unsuccessful: in 1992 it was leased to a private French businessman who is currently fishing the reefs for commercial profit, as well as disturbing seabird, turtle and coconut crab populations.

Marine macrophytes of Minicoy (Lakshadweep) coral atoll of the Arabian Sea

Digital Repository Service at National Institute of Oceanography (India)

Untawale, A.G.; Jagtap, T.G.

Thirty-seven species of marine algae, belonging to 31 genera 5 seagrass species and one mangrove species, were recorded from Minicoy Atoll. The predominant seaweeds observed were Enteromorpha clathrata, Caulerpa species, Ulva lactuca, Halimeda...

Audit Report. Johnston Atoll Chemical Agent Disposal System Preparation for Year 2000

National Research Council Canada - National Science Library

1998-01-01

.... The overall audit objective was to determine whether the Johnston Atoll Chemical Agent Disposal System was adequately preparing its information technology systems to resolve date-processing issues...

Limited trophic partitioning among sympatric delphinids off a tropical oceanic atoll.

Directory of Open Access Journals (Sweden)

Hillary Young

Full Text Available Understanding trophic relationships among marine predators in remote environments is challenging, but it is critical to understand community structure and dynamics. In this study, we used stable isotope analysis of skin biopsies to compare the isotopic, and thus, trophic niches of three sympatric delphinids in the waters surrounding Palmyra Atoll, in the Central Tropical Pacific: the melon-headed whale (Peponocephala electra, Gray's spinner dolphin (Stenella longirostris longirostris, and the common bottlenose dolphin (Tursiops truncatus. δ15N values suggested that T. truncatus occupied a significantly higher trophic position than the other two species. δ13C values did not significantly differ between the three delphinds, potentially indicating no spatial partitioning in depth or distance from shore in foraging among species. The dietary niche area-determined by isotopic variance among individuals-of T. truncatus was also over 30% smaller than those of the other species taken at the same place, indicating higher population specialization or lower interindividual variation. For P. electra only, there was some support for intraspecific variation in foraging ecology across years, highlighting the need for temporal information in studying dietary niche. Cumulatively, isotopic evidence revealed surprisingly little evidence for trophic niche partitioning in the delphinid community of Palmyra Atoll compared to other studies. However, resource partitioning may happen via other behavioral mechanisms, or prey abundance or availability may be adequate to allow these three species to coexist without any such partitioning. It is also possible that isotopic signatures are inadequate to detect trophic partitioning in this environment, possibly because isotopes of prey are highly variable or insufficiently resolved to allow for differentiation.

Relationships between benthic cover, current strength, herbivory, and a fisheries closure in Glovers Reef Atoll, Belize

Science.gov (United States)

McClanahan, T.; Karnauskas, M.

2011-03-01

Benthic cover, current strengths, and fish abundance and diversity were examined on 150 lagoonal patch reefs and mapped to determine their distribution, inter-relationships, and relationship to the fisheries closure in Glovers Reef Atoll. Current strength was highest at both the northern and southern ends of the atoll and largely controlled by local wind and weakly by tidal forcing. Benthic functional group distributions varied throughout the atoll and had distinct areas of dominance. In contrast, dominance of coral species was weaker, reflecting the lost cover and zonation of Acropora, Porites, and Montastraea that were reported in the 1970s. Hard and soft corals dominated the windward rim, while the central and leeward lagoon had lower current strengths and sea grass and fleshy green algae were relatively more abundant. Brown erect algae were relatively more common in the north and calcifying green and red algae the southern ends of the atoll. Only Montastraea- Agaricia agaricites distributions were similar to reports from the 1970s with high relative dominance in the southern and northeast atoll. The central-northern zone, which was described as an Acropora zone in the 1970s, was not recognizable, and Porites porites, P. astreoides, Millepora alcicornis, and Favia fragum were the most abundant species during this survey . Hard and soft coral cover abundance declined away from the reef rim and tidal channels and was associated with fast seawater turnover and high surgeonfish abundance. Consequently, the windward rim area has retained the most original and persistent hard-soft coral and surgeonfish community and is considered a priority for future management, if the goal is to protect coral from fishing impacts.

CRED REA Fish Team Belt Transect Survey at Swains Atoll, 2004

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 3 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 8 sites at Swains Atoll in...

Familial versus mass selection in small populations

Directory of Open Access Journals (Sweden)

Couvet Denis

2003-07-01

Full Text Available Abstract We used diffusion approximations and a Markov-chain approach to investigate the consequences of familial selection on the viability of small populations both in the short and in the long term. The outcome of familial selection was compared to the case of a random mating population under mass selection. In small populations, the higher effective size, associated with familial selection, resulted in higher fitness for slightly deleterious and/or highly recessive alleles. Conversely, because familial selection leads to a lower rate of directional selection, a lower fitness was observed for more detrimental genes that are not highly recessive, and with high population sizes. However, in the long term, genetic load was almost identical for both mass and familial selection for populations of up to 200 individuals. In terms of mean time to extinction, familial selection did not have any negative effect at least for small populations (N ≤ 50. Overall, familial selection could be proposed for use in management programs of small populations since it increases genetic variability and short-term viability without impairing the overall persistence times.

Natural Selection in Large Populations

Science.gov (United States)

Desai, Michael

2011-03-01

I will discuss theoretical and experimental approaches to the evolutionary dynamics and population genetics of natural selection in large populations. In these populations, many mutations are often present simultaneously, and because recombination is limited, selection cannot act on them all independently. Rather, it can only affect whole combinations of mutations linked together on the same chromosome. Methods common in theoretical population genetics have been of limited utility in analyzing this coupling between the fates of different mutations. In the past few years it has become increasingly clear that this is a crucial gap in our understanding, as sequence data has begun to show that selection appears to act pervasively on many linked sites in a wide range of populations, including viruses, microbes, Drosophila, and humans. I will describe approaches that combine analytical tools drawn from statistical physics and dynamical systems with traditional methods in theoretical population genetics to address this problem, and describe how experiments in budding yeast can help us directly observe these evolutionary dynamics.

CRED REA Fish Team Belt Transect Surveys at Kure Atoll 2004

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Belt transects along 3 consecutively-placed, 25m transect lines were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Kure Atoll in October,...

Radiation doses for Marshall Islands Atolls affected by U.S. nuclear testing: all exposure pathways, remedial measures, and environmental loss of (137)Cs.

Science.gov (United States)

Robison, William L; Hamilton, Terry F

2010-01-01

Radiation doses calculated for people resettling Bikini Island at Bikini Atoll, Enjebi Island at Enewetak Atoll, Rongelap Island at Rongelap Atoll, and Utrōk Island at Utrōk Atoll are presented. Residence is assumed to begin in 2010. In previous dose assessments it was shown that (137)Cs accounts for about 98% of the total dose for returning residents. About 85 to 90% (depending on the atoll) is via consumption of locally grown foods containing (137)Cs, and about 10 to 15% is due to external exposure from (137)Cs in the soil. These assessments were made using only the radiological half-life of (137)Cs (30.1 y). We have shown since that there is an environmental loss of (137)Cs from soil to groundwater that results in a more rapid loss of (137)Cs from the atoll ecosystem. The mean effective half-life of (137)Cs at the atolls is 8.5 y. Moreover, treatment of coconut trees with potassium (K) reduces (137)Cs concentration in drinking coconut meat at Bikini Atoll to about 5% of pretreatment concentrations. The magnitude of reduction is dependent on the concentration of (137)Cs in soil, and thereby in food crops, and is less for Enjebi and Rongelap Islands than for Bikini Island. Treatment of food crops and fruit trees with K and removal of the top 15 cm of soil around houses and community buildings prior to construction to reduce external exposure where people spend most of their time has been presented to the communities as a "Combined Option" remediation strategy. Doses presented here are calculated using the Combined Option, effective half-life of (137)Cs at the atolls, and a diet of both imported and local foods. The average natural background dose in the Marshall Islands, plus the anthropogenic nuclear test-related dose at Bikini, Enjebi, and Rongelap Islands, is less for each of the islands than the average background dose in the U.S. and Europe.

Baseline Marine Biological Survey ROI-NAMUR Outfall United States Army Kwajalein Atoll, Republic of the Marshall Islands, 1997(NODC Accession 0000630)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Roi-Namur is located at the northernmost tip of Kwajalein Atoll, approximately 64 kilometers north of the U.S. Army Kwajalein Atoll(USAKA) central command post on...

Bikini Atoll coral biodiversity resilience five decades after nuclear testing

International Nuclear Information System (INIS)

Richards, Zoe T.; Beger, Maria; Pinca, Silvia; Wallace, Carden C.

2008-01-01

Five decades after a series of nuclear tests began, we provide evidence that 70% of the Bikini Atoll zooxanthellate coral assemblage is resilient to large-scale anthropogenic disturbance. Species composition in 2002 was assessed and compared to that seen prior to nuclear testing. A total of 183 scleractinian coral species was recorded, compared to 126 species recorded in the previous study (excluding synonomies, 148 including synonomies). We found that 42 coral species may be locally extinct at Bikini. Fourteen of these losses may be pseudo-losses due to inconsistent taxonomy between the two studies or insufficient sampling in the second study, however 28 species appear to represent genuine losses. Of these losses, 16 species are obligate lagoonal specialists and 12 have wider habitat compatibility. Twelve species are recorded from Bikini for the first time. We suggest the highly diverse Rongelap Atoll to the east of Bikini may have contributed larval propagules to facilitate the partial resilience of coral biodiversity in the absence of additional anthropogenic threats

Observations of infragravity motions for reef fringed islands and atolls

Science.gov (United States)

Becker, J. M.; Merrifield, M. A.; Ford, M.

2012-12-01

The frequency of flooding events that affect low lying islands and atolls in the Pacific is expected to increase under current sea level rise projections. Infragravity (IG) motions, with periods ranging from approximately 25 to 400 seconds, are an important component of wave driven flooding events for reef fringed islands and atolls. The IG variability during wave events is analyzed and interpreted dynamically from pressure and current observations at four cross-reef transects in the North Pacific Ocean that include sites in the Republic of the Marshall Islands and Guam. The IG motions are shown to depend upon the spectral properties of the incident wave forcing and reef flat characteristics that include reef flat length (ranging from 100m to 450m at the four sites) and total water level due to setup and tides. A small inundation event at one of the sites is shown to occur due to large shoreline infragravity energy.

Baseline for beached marine debris on Sand Island, Midway Atoll

Science.gov (United States)

Ribic, Christine; Seba B. Sheavly,; John Klavitter,

2012-01-01

Baseline measurements were made of the amount and weight of beached marine debris on Sand Island, Midway Atoll, June 2008–July 2010. On 23 surveys, 32,696 total debris objects (identifiable items and pieces) were collected; total weight was 740.4 kg. Seventy-two percent of the total was pieces; 91% of the pieces were made of plastic materials. Pieces were composed primarily of polyethylene and polypropylene. Identifiable items were 28% of the total; 88% of the identifiable items were in the fishing/aquaculture/shipping-related and beverage/household products-related categories. Identifiable items were lowest during April–August, while pieces were at their lowest during June–August. Sites facing the North Pacific Gyre received the most debris and proportionately more pieces. More debris tended to be found on Sand Island when the Subtropical Convergence Zone was closer to the Atoll. This information can be used for potential mitigation and to understand the impacts of large-scale events such as the 2011 Japanese tsunami.

Bikini Atoll coral biodiversity resilience five decades after nuclear testing

Energy Technology Data Exchange (ETDEWEB)

Richards, Zoe T. [Museum of Tropical Queensland, Flinders St, Townsville, QLD 4810 (Australia) and Australian Research Council Centre of Excellence for Coral Reef Studies, James Cook University, Townsville, QLD 4811 (Australia) and School of Marine and Tropical Biology, James Cook University, Townsville QLD 4811 (Australia); NRAS - Marshall Islands: Natural Resource Assessment Surveys (Australia)], E-mail: zoe.richards@jcu.edu.au; Beger, Maria [Ecology Centre and Commonwealth Research Facility for Applied Environmental Decision Analysis, University of Queensland, St Lucia, QLD 4072 (Australia); NRAS - Marshall Islands: Natural Resource Assessment Surveys (Australia); Pinca, Silvia [College of the Marshall Islands, Majuro, Marshall Islands, NRAS - Marshall Islands: Natural Resource Assessment Surveys (Australia); Wallace, Carden C. [Museum of Tropical Queensland, Flinders St, Townsville, QLD 4810 (Australia)

2008-03-15

Five decades after a series of nuclear tests began, we provide evidence that 70% of the Bikini Atoll zooxanthellate coral assemblage is resilient to large-scale anthropogenic disturbance. Species composition in 2002 was assessed and compared to that seen prior to nuclear testing. A total of 183 scleractinian coral species was recorded, compared to 126 species recorded in the previous study (excluding synonomies, 148 including synonomies). We found that 42 coral species may be locally extinct at Bikini. Fourteen of these losses may be pseudo-losses due to inconsistent taxonomy between the two studies or insufficient sampling in the second study, however 28 species appear to represent genuine losses. Of these losses, 16 species are obligate lagoonal specialists and 12 have wider habitat compatibility. Twelve species are recorded from Bikini for the first time. We suggest the highly diverse Rongelap Atoll to the east of Bikini may have contributed larval propagules to facilitate the partial resilience of coral biodiversity in the absence of additional anthropogenic threats.

Statistical aspects of the cleanup of Enewetak Atoll

International Nuclear Information System (INIS)

Giacomini, J.J.; Miller, F.L. Jr.

1981-01-01

The Desert Research Institute participated in the Enewetak Atoll Radiological Cleanup by providing data-base management and statistical analysis support for the Department of Energy team. The data-base management responsibilities included both design and implementation of a system for recording (in machine-retrievable form) all radiological measurements made during the cleanup, excluding personnel dosimetry. Statistical analyses were performed throughout the cleanup and were used to guide excavation activities

Redistribution of fallout radionuclides in Enewetak Atoll lagoon sediments by callianassid bioturbation.

Science.gov (United States)

McMurtry, G M; Schneider, R C; Colin, P L; Buddemeier, R W; Suchanek, T H

The lagoon sediments of Enewetak Atoll in the Marshall Islands contain a large selection of fallout radionuclides as a result of 43 nuclear weapon tests conducted there between 1948 and 1958. Studies of the burial of fallout radionuclides have been conducted on the islands and in several of the large craters, but studies of their vertical distribution have been limited to about the upper 20 cm of the lagoon sediments. We have found elevated fallout radionuclide concentrations buried more deeply in the lagoon sediments and evidence of burrowing into the sediment by several species of callianassid ghost shrimp (Crustacea: Thalassinidea) which has displaced highly radioactive sediment. The burrowing activities of callianassids, which are ubiquitous on the lagoon floor, facilitate radionuclide redistribution and complicate the fallout radionuclide inventory of the lagoon.

Report on a few Octocorals from Eniwetok Atoll, Marshall Islands

NARCIS (Netherlands)

Verseveldt, J.

1972-01-01

In 1969 Dr. Arthur G. Humes, Boston University, Massachusetts, U.S.A., collected a number of octocorals at Eniwetok Atoll, Marshall Islands. He found that most of these corals were the hosts of copepods, just like the corals collected by him in the waters north-west of Madagascar (vide Verseveldt,

Phytoplankton biomass dynamics and environmental variables around the Rocas Atoll Biological Reserve, South Atlantic

Directory of Open Access Journals (Sweden)

Marina Cavalcanti Jales

2015-12-01

Full Text Available Abstract The Rocas Atoll Biological Reserve is located in the Atlantic Ocean, at 3º 51' S and 33º 49' W. It lies 143 nautical miles from the City of Natal, Rio Grande do Norte (Brazil. The purpose of this study was to analyze the hydrology, water masses, currents and chlorophyll a content to determine the dynamics of phytoplankton biomass around the Rocas Atoll. Samples were collected in July 2010 in the area around the Atoll, using the Research Vessel Cruzeiro do Sul of the Brazilian Navy. Two transects were established according to the surface currents, one of which at the southeast of the Atoll (SE and the other at norwest (NW. Three collection points were determined on each of these transects. Samples were collected at different depths (surface and DCM - Deep Chlorophyll Maximum and different times (day and night. According to PCA (Principal Component Analysis, the nutrients analyzed, DIN (dissolved inorganic nitrogen, DIP (dissolved inorganic phosphorus and silicate, were inversely correlated with temperature and dissolved oxygen. Most environmental variables showed a significant increase due to the turbulence on the Northwest transect. There was an increase in the concentration of chlorophyll a and nutrients when the temperature and oxygen in the mixed layer was reduced due to the influence of the SACW (South Atlantic Central Water. Despite the increase observed in some variables such as nutrient salts and chlorophyll a, the temperature in the mixed layer attained a mean value of 23.23 ºC due to the predominance of Tropical Water. The increase of the phytoplankton biomass on the NW transect was, therefore, caused by the "island effect" and not by upwelling.

CRED Gridded Bathymetry near Midway Atoll (100-102), Northwestern Hawaiian Islands

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — File 100-102b is a 60-m ASCII grid of depth data collected near Midway Atoll in the Northwestern Hawaiian Islands as of May 2003. This grid has been produced as part...

Plastic ingestion by Masked booby, Sula dactylatra Lesson, 1831, on Biological Reserve of Rocas Atoll, RN, Brazil

Directory of Open Access Journals (Sweden)

Erich de Freitas Mariano

2012-11-01

Full Text Available Plastic particles are one of the most common pollutants in the marine environment and it is reaching regions with low human population density. These particles are frequently ingested by many marine organisms, causing digestive problems, which may lead to the weakening and death of the animal. In a research on the feeding of 631-masked boobies, Sula dactylatra from the Biological Reserve of Atol das Rocas, plastic particles were found in stomach contents of four adults. The artifacts found were made of transperant plastic, a piece of label of a mineral water bottle, two pieces of black plastic and a small hard and red piece. The flow of fishing and tourism boats on the Atol das Rocas Biological Reserve may be the source of origin of the plastic parts in both the stomach contents and those found on the islands of the reserve, which suggests that anthropogenic behaviour has already reached isolated areas which should have a high degree of biodiversity protection. Several measures can be taken to avoid deleterious events in the marine biota, but there is great difficulty in avoiding waste dumping from fishing and tourism ships/boats, in addition to that, there are many materials from the mainland, which requires an increase in awareness and supervision.

Environmental assessment for the resettlement of Eneu Island on Bikini Atoll, Republic of the Marshall Islands

International Nuclear Information System (INIS)

Maragos, J.E.; Agegian, Catherine

1986-01-01

This environmental assessment evaluates various alternatives to return the Bikini people to their homeland on Bikini Atoll. Eneu Island was spared the heavy nuclear contamination that rendered Bikini Island, the largest and main inhabitable island on the atoll, presently unsuitable for resettlement. The economic, social, technical and environmental consequences of all alternatives were compared, and alternative sites, purposes and scales for resettlement were included in the analysis. This environmental assessment explores these alternatives in detail and concludes that the resettlement of Eneu Island by some of the Bikini people at this time will not result in significant adverse effects to the environment nor will it foreclose any other full scale resettlement option involving the cleanup of Bikini Atoll. In addition, it concludes that the resettlement of Eneu can be accomplished independently from the planned cleanup and resettlement of Bikini Island. Plans and combination of plans involving the early resettlement of Eneu are fully feasible and implementable at this time. (author)

Environmental assessment for the resettlement of Eneu Island on Bikini Atoll, Republic of the Marshall Islands

Energy Technology Data Exchange (ETDEWEB)

Maragos, J E [Environmental Resources Section, U.S. Army Corps of Engineers, Pacific Ocean Division, HI (United States); Agegian, Catherine [University of Hawaii, Department of Oceanography, Honolulu, HI (United States)

1986-07-01

This environmental assessment evaluates various alternatives to return the Bikini people to their homeland on Bikini Atoll. Eneu Island was spared the heavy nuclear contamination that rendered Bikini Island, the largest and main inhabitable island on the atoll, presently unsuitable for resettlement. The economic, social, technical and environmental consequences of all alternatives were compared, and alternative sites, purposes and scales for resettlement were included in the analysis. This environmental assessment explores these alternatives in detail and concludes that the resettlement of Eneu Island by some of the Bikini people at this time will not result in significant adverse effects to the environment nor will it foreclose any other full scale resettlement option involving the cleanup of Bikini Atoll. In addition, it concludes that the resettlement of Eneu can be accomplished independently from the planned cleanup and resettlement of Bikini Island. Plans and combination of plans involving the early resettlement of Eneu are fully feasible and implementable at this time. (author)

Managing an invasive corallimorph at Palmyra Atoll National Wildlife Refuge, Line Islands, Central Pacific

Science.gov (United States)

Work, Thierry M.; Aeby, Greta S.; Neal, Benjamin P.; Price, Nichole N.; Conklin, Eric; Pollock, Amanda

2018-01-01

In 2007, a phase shift from corals to corallimorpharians (CM) centered around a shipwreck was documented at Palmyra Atoll, Line Islands. Subsequent surveys revealed CM to be overgrowing the reef benthos, including corals and coralline algae, potentially placing coral ecosystems in the atoll at risk. This prompted the U.S. Fish and Wildlife Service, the lead management agency of the atoll, to remove the shipwreck. Subsequent surveys showed reductions in CM around the ship impact site. We explain patterns of spread of the CM in terms of both life history and local currents and show with a pilot study that pulverized bleach may be an effective tool to eradicate CM on a local scale. If applied strategically, particularly in heavily infested (> 66% cover) areas, active intervention such as this could be an effective management tool to reduce CM impact on localized areas and decrease colonization rate of remaining reefs. This is the first documentation of the response of an invasive cnidarian to shipwreck removal. While this was a singular event in Palmyra, the spatial and temporal patterns of this invasion and the eradications lessons described herein, are useful for anticipating and controlling similar situations elsewhere.

Origin and migration of trace elements in the surface sediments of Majuro Atoll, Marshall Islands.

Science.gov (United States)

Ito, Lisa; Omori, Takayuki; Yoneda, Minoru; Yamaguchi, Toru; Kobayashi, Ryuta; Takahashi, Yoshio

2018-07-01

The sediments of Majuro Atoll, Marshall Islands, consist of bioclastic materials, including foraminifera and coral debris. The sedimentary depth profiles of elements showed that various elements including zinc (Zn) and copper (Cu) were enriched in the upper layers of the islands of Majuro Atoll. Carbon-14 dating revealed that the sedimentation of the upper layer was completed before 1670 and 542 cal BP in Laura and Calalen, respectively. The enriched elements could be categorized by their origins: (a) terrestrial elements transported as dust (aluminum (Al) and rare earth elements (REEs)); (b) anthropogenic elements (Zn and Cu); and (c) elements supplied by seabirds (phosphorus (P)). From the results of the total amount of Al supplied to sediments for ca. 2000 years, Al in Majuro Atoll was suggested to be airborne origin. The enrichment factors of the elements normalized to Al concentration of continental crust showed that REEs were also transported as dust, while Zn and Cu were mainly of anthropogenic origin. The speciation analysis by X-ray absorption near-edge structure (XANES) showed the presence of Zn-Cu alloys originated from industrial products. It was also revealed that Zn was enriched in the surface due to anthropogenic emission after urbanization on Majuro Atoll and fixed by carbonate and phosphate at the upper layer, which inhibits migration of Zn into the deeper layer and its release to the groundwater and costal water. Hence, the fixation of heavy metals at the surface prevents their exposure to aquatic organisms and residents via fresh groundwater in the island. Copyright © 2018 Elsevier Ltd. All rights reserved.

beta. and. gamma. -comparative dose estimates on Enewetak Atoll

Energy Technology Data Exchange (ETDEWEB)

Crase, K.W.; Gudiksen, P.H.; Robison, W.L. (California Univ., Livermore (USA). Lawrence Livermore National Lab.)

1982-05-01

Enewetak Atoll in the Pacific is used for atmospheric testing of U.S. nuclear weapons. Beta dose and ..gamma..-ray exposure measurements were made on two islands of the Enewetak Atoll during July-August 1976 to determine the ..beta.. and low energy ..gamma..-contribution to the total external radiation doses to the returning Marshallese. Measurements were made at numerous locations with thermoluminescent dosimeters (TLD), pressurized ionization chambers, portable NaI detectors, and thin-window pancake GM probes. Results of the TLD measurements with and without a ..beta..-attenuator indicate that approx. 29% of the total dose rate at 1 m in air is due to ..beta..- or low energy ..gamma..-contribution. The contribution at any particular site, however, is reduced by vegetation. Integral 30-yr external shallow dose estimates for future inhabitants were made and compared with external dose estimates of a previous large scale radiological survey. Integral 30-yr shallow external dose estimates are 25-50% higher than whole body estimates. Due to the low penetrating ability of the ..beta..'s or low energy ..gamma..'s, however, several remedial actions can be taken to reduce the shallow dose contribution to the total external dose.

CRED REA Fish Team Stationary Point Count Surveys at Rose Atoll, 2004

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments conducted at 12 sites at Rose Atoll in American Samoa...

Formation of Atoll Garnets in the UHP Eclogites of the Tso Morari ...

Indian Academy of Sciences (India)

7

across the studied atoll grains show elemental variations with higher concentrations of Ca and. 10 ...... from a single eclogite outcrop in the complex and probably represent a case of accidental. 28 ... Textural and compositional relations in the.

CRED REA Fish Team Stationary Point Count Surveys at Midway Atoll, 2003

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Midway Atoll in July and...

CRED REA Fish Team Stationary Point Count Surveys at Kure Atoll, 2004

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Stationary Point Counts at 4 stations at each survey site were surveyed as part of Rapid Ecological Assessments conducted at 9 sites at Kure Atoll in October, 2004...

Effect of climate and environmental changes on plankton biodiversity and bigeochemical cycles of the Dongsha (Pratas) Atoll, South China Sea

Science.gov (United States)

Lo, Wen-tseng; Hsu, Pei-Kai; Hunag, Jia-Jang; Wang, Yu-Huai

2013-04-01

Dongsha (Pratas) Atoll, the so called "Pearl Crown of South China Sea", is a well-developed atoll with a total area of 80000 hectares. It possesses various ecosystems and has very high biodiversity, but it is very sensitive to climate change and physical processes. According to our investigation within the shallow semi-enclosed atoll in April, July, and October, 2011 (i.e., spring, summer, and autumn, respectively), we found that plankton assemblages and hydrographical conditions exhibited clear seasonal and spatial variations. Colder and higher salinity water was observed in April, while warmer water in July and lower salinity water in October, respectively. Nutrient concentration within the atoll was similar to that of the oligotrophic South China Sea waters and seemed to be in nitrogen-limit situation, while the distribution pattern of DOC and POC was mainly attributed to Chla and imported detritus matters. Carbon deposition flux also showed significant seasonal changes, but POC/PN value was near Redfield ratio, implying mostly due to biogenic factors; however it could still be classified as a typical coral ecosystem, since CaCO3 sinking flux generally was 30 times higher than that of organic matter. Plankton biodiversity was quite high in the atoll, and preformed apparent seasonal succession; in total, 82 phytoplankton species and 67 copepod species were recorded; furthermore, crab zoea (17.3% of the total zooplankton by number), fish eggs (12.5%), and shrimp larvae (4.2%), were relatively abundant in zooplankton community, revealed that atoll might be a good hatching ground. We deduced that the seasonal patterns of chemical and biological variables were mainly influenced by monsoons and precipitation, while small scales of temporal and spatial variations could be ascribed to internal wave and tide in this study area.

Comparison of gamma-ray exposure rate measurements at Bikini Atoll

International Nuclear Information System (INIS)

Gudiksen, P.H.; Crites, T.R.

1975-01-01

A radiological survey of Bikini and Eneu Islands of the Bikini Atoll was conducted during June 1975 to assess the potential radiation doses that may be received by the returning Bikinians. Bikini Atoll was one of the U.S. nuclear weapons testing sites in the Pacific. An integral part of the survey included measurements of the gamma-ray exposure rates at 1 m above the ground with portable NaI instruments at nearly 2700 locations on the two islands. For comparison purposes, similar measurements were made with a pressurized ion chamber at approximately 200 locations, and with LiF and CaF 2 :Dy thermoluminescent dosimeters (TLDs) at 80 locations. The results indicate that the NaI scintillators overresponded because of their nonlinear energy characteristics. The responses of the LiF dosimeters and the pressurized ion chamber agreed to within 13 percent. Attenuation studies with LiF TLDs indicated that roughly 25 percent of the total free air exposure rate at 1 m was due to beta radiation

External exposure measurements at Bikini Atoll

International Nuclear Information System (INIS)

Greenhouse, N.A.; Miltenberger, R.P.; Lessard, E.T.

1979-01-01

External exposure rate surveys from 1975 to 1977 on the islands Nam, Eneu and Bikini of Bikini Atoll gave average external exposure rates of 24, 5.7, and 32 μR/hr respectively. The exposure rate on Eneu Island is uniform, whereas those on Bikini and Nam range from 7.0 to 80. μR/hr. Based on an assumed living pattern at Bikini Island, the adult male Bikinian is estimated to be in the presence of an external radiation field corresponding to 16 μR/hr due to debris and fallout from the 1954 BRAVO incident. This corresponds to a 30 year dose equivalent of 2.8 rem

Baseline marine biological survey at Roi-Namur sewage outfall, United States Army Kwajalein Atoll, Republic of the Marshall Islands, 1997 (NODC Accession 0000630)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Roi-Namur is located at the northernmost tip of Kwajalein Atoll, approximately 64 kilometers north of the U.S. Army Kwajalein Atoll (USAKA) central command post on...

Vertical and horizontal genetic connectivity in Chromis verater, an endemic damselfish found on shallow and mesophotic reefs in the Hawaiian Archipelago and adjacent Johnston Atoll.

Science.gov (United States)

Tenggardjaja, Kimberly A; Bowen, Brian W; Bernardi, Giacomo

2014-01-01

Understanding vertical and horizontal connectivity is a major priority in research on mesophotic coral ecosystems (30-150 m). However, horizontal connectivity has been the focus of few studies, and data on vertical connectivity are limited to sessile benthic mesophotic organisms. Here we present patterns of vertical and horizontal connectivity in the Hawaiian Islands-Johnston Atoll endemic threespot damselfish, Chromis verater, based on 319 shallow specimens and 153 deep specimens. The mtDNA markers cytochrome b and control region were sequenced to analyze genetic structure: 1) between shallow (shallow and mesophotic populations. There was no significant genetic differentiation by depth, indicating high levels of vertical connectivity between shallow and deep aggregates of C. verater. Consequently, shallow and deep samples were combined by location for analyses of horizontal connectivity. We detected low but significant population structure across the Hawaiian Archipelago (overall cytochrome b: ΦST = 0.009, P = 0.020; control region: ΦST = 0.012, P = 0.009) and a larger break between the archipelago and Johnston Atoll (cytochrome b: ΦST = 0.068, P deep reefs may constitute a population reservoir for species depleted in shallow reef habitats. These findings represent the first connectivity study on a mobile organism that spans shallow and mesophotic depths and provide a reference point for future connectivity studies on mesophotic fishes.

Non-Selective Evolution of Growing Populations.

Directory of Open Access Journals (Sweden)

Karl Wienand

Full Text Available Non-selective effects, like genetic drift, are an important factor in modern conceptions of evolution, and have been extensively studied for constant population sizes (Kimura, 1955; Otto and Whitlock, 1997. Here, we consider non-selective evolution in the case of growing populations that are of small size and have varying trait compositions (e.g. after a population bottleneck. We find that, in these conditions, populations never fixate to a trait, but tend to a random limit composition, and that the distribution of compositions "freezes" to a steady state. This final state is crucially influenced by the initial conditions. We obtain these findings from a combined theoretical and experimental approach, using multiple mixed subpopulations of two Pseudomonas putida strains in non-selective growth conditions (Matthijs et al, 2009 as model system. The experimental results for the population dynamics match the theoretical predictions based on the Pólya urn model (Eggenberger and Pólya, 1923 for all analyzed parameter regimes. In summary, we show that exponential growth stops genetic drift. This result contrasts with previous theoretical analyses of non-selective evolution (e.g. genetic drift, which investigated how traits spread and eventually take over populations (fixate (Kimura, 1955; Otto and Whitlock, 1997. Moreover, our work highlights how deeply growth influences non-selective evolution, and how it plays a key role in maintaining genetic variability. Consequently, it is of particular importance in life-cycles models (Melbinger et al, 2010; Cremer et al, 2011; Cremer et al, 2012 of periodically shrinking and expanding populations.

Relationship between elemental distribution in soil and human impact in Majuro Atoll

Science.gov (United States)

Ito, L.; Takahashi, Y.; Yoneda, M.; Omori, T.; Yamazaki, K.; Yoshida, H.; Tamenori, Y.; Suga, H.; Yamaguchi, T.

2015-12-01

Majuro Atoll is one of islands of the Marshall Islands, located in the central Pacific Ocean. Reef-building corals and biological remains such as foraminifera have formed the islands under the influence of sea-level changes in the Holocene. Since the altitude of the general coral reef island tends to be very low, it is believed that the islands are vulnerable to natural disasters and climate change. However, people have lived in the Majuro Atoll in Marshall Islands for more than 2000 years. Reef islands in the same atoll are often considered to have same tendencies in the developing process; however, (i) there are possibilities that each geography produces different condition in habitat and (ii) human activities have changed the original nature in the island. In this study, we focus on the changes of physico-chemical conditions of soil depending on the depth according to time series variation in three islands in Majuro Atoll. Dating of each depth was conducted by radiocarbon (14C) measurement for foraminifera using accelerator mass spectrometry (AMS) and Bayesian age-depth Models. X-ray fluorescence (XRF) and ICP-MS analyses were employed to measure major and trace elements at different depth, respectively. Among them, phosphorus (P) is considered to play an important role in soil development; therefore X-ray absorption fine structure (XAFS) analysis was also conducted to examine the chemical form of P. Scanning electron microscope (SEM) was used to examine the elemental distribution in the soil particles, while X-ray computed tomography (CT) was used to calculate the rate of porosity of foraminifera at each depth. Concentrations of Fe, Mn, and P decrease with depth and vice versa for Mg. As a result of the μ-XAFS analysis, P in the soil exists as organic phosphorus and apatite. Phosphorous detected from the upper layer was found to distribute heterogeneously in the particles, which was observed as punctate pattern by the SEM observation. The ICP-MS results showed

Selection signatures in worldwide sheep populations.

Science.gov (United States)

Fariello, Maria-Ines; Servin, Bertrand; Tosser-Klopp, Gwenola; Rupp, Rachel; Moreno, Carole; San Cristobal, Magali; Boitard, Simon

2014-01-01

The diversity of populations in domestic species offers great opportunities to study genome response to selection. The recently published Sheep HapMap dataset is a great example of characterization of the world wide genetic diversity in sheep. In this study, we re-analyzed the Sheep HapMap dataset to identify selection signatures in worldwide sheep populations. Compared to previous analyses, we made use of statistical methods that (i) take account of the hierarchical structure of sheep populations, (ii) make use of linkage disequilibrium information and (iii) focus specifically on either recent or older selection signatures. We show that this allows pinpointing several new selection signatures in the sheep genome and distinguishing those related to modern breeding objectives and to earlier post-domestication constraints. The newly identified regions, together with the ones previously identified, reveal the extensive genome response to selection on morphology, color and adaptation to new environments.

On the occurrence of Bullia tranquebarica (Roding) Nassaridae (Gastropoda) in Kavaratti atoll (Lakshadweep)

Digital Repository Service at National Institute of Oceanography (India)

Namboodiri, P.N.; Sivadas, P.

A live buccinid gastropod Bullia tranquebarica belonging to family Nassaridae was collected from Kavaratti atoll in Lakshadweep island of Indian Ocean. Interesting pattern of its distribution is described. This is the second record of occurrence...

2007 Reson 8101ER Multibeam Sonar Data from Cruise AHI0701 - Wake Atoll

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Reson 8101ER multibeam Data were collected between 19 April - 9 May 2007 aboard NOAA Survey Launch Acoustic Habitat Investigator (AHI) at Wake Atoll, Western Pacific...

Marine biological survey of ROI-NAMUR outfall at the United States Army Kwajalein Atoll, Republic of the Marshall Islands, May 2000 (NODC Accession 0000653)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Roi-Namur is located at the northernmost tip of Kwajalein Atoll, approximately 64 kilometers north of the U.S. Army Kwajalein Atoll (USAKA) central command post on...

Land-use change and managed aquifer recharge effects on the hydrogeochemistry of two contrasting atoll island aquifers, Roi-Namur Island, Republic of the Marshall Islands

International Nuclear Information System (INIS)

Hejazian, Mehrdad; Gurdak, Jason J.; Swarzenski, Peter; Odigie, Kingsley O.; Storlazzi, Curt D.

2017-01-01

Freshwater resources on low-lying atoll islands are highly vulnerable to climate change and sea-level rise. In addition to rainwater catchment, groundwater in the freshwater lens is a critically important water resource on many atoll islands, especially during drought. Although many atolls have high annual rainfall rates, dense natural vegetation and high evapotranspiration rates can limit recharge to the freshwater lens. Here we evaluate the effects of land-use/land-cover change and managed aquifer recharge on the hydrogeochemistry and supply of groundwater on Roi-Namur Island, Republic of the Marshall Islands. Roi-Namur is an artificially conjoined island that has similar hydrogeology on the Roi and Namur lobes, but has contrasting land-use/land-cover and managed aquifer recharge only on Roi. Vegetation removal and managed aquifer recharge operations have resulted in an estimated 8.6 × 10"5 m"3 of potable groundwater in the freshwater lens on Roi, compared to only 1.6 × 10"4 m"3 on Namur. We use groundwater samples from a suite of 33 vertically nested monitoring wells, statistical testing, and geochemical modeling using PHREEQC to show that the differences in land-use/land-cover and managed aquifer recharge on Roi and Namur have a statistically significant effect on several groundwater-quality parameters and the controlling geochemical processes. Results also indicate a six-fold reduction in the dissolution of carbonate rock in the freshwater lens and overlying vadose zone of Roi compared to Namur. Mixing of seawater and the freshwater lens is a more dominant hydrogeochemical process on Roi because of the greater recharge and flushing of the aquifer with freshwater as compared to Namur. In contrast, equilibrium processes and dissolution-precipitation non-equilibrium reactions are more dominant on Namur because of the longer residence times relative to the rate of geochemical reactions. Findings from Roi-Namur Island support selective land

CRED REA Algal Assessments, Midway Atoll, Northwestern Hawaiian Islands 2003 (NODC Accession 0010352)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Twelve quadrats were sampled along 2 consecutively-placed, 25m transect lines as part of Rapid Ecological Assessments conducted at 9 sites at Midway Atoll in the...

CRED REA Algal Assessments, Midway Atoll, Northwestern Hawaiian Islands 2004 (NODC Accession 0010352)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Twelve quadrats were sampled along 2 consecutively-placed, 25m transect lines as part of Rapid Ecological Assessments conducted at 9 sites at Midway Atoll in the...

Local extinction of the Asian tiger mosquito (Aedes albopictus) following rat eradication on Palmyra Atol

Science.gov (United States)

Lafferty, Kevin D.; McLaughlin, John P.; Gruner, Daniel S.; Bogar, Taylor A.; Bui, An; Childress, Jasmine N.; Espinoza, Magaly; Forbes, Elizabeth S.; Johnston, Cora A.; Klope, Maggie; Kuile, Ana Miller-ter; Lee, Michelle; Plummer, Katherine A.; Weber, David A.; Young, Ronald T.; Young, Hillary S.

2018-01-01

The Asian tiger mosquito, Aedes albopictus, appears to have been extirpated from Palmyra Atoll following rat eradication. Anecdotal biting reports, collection records, and regular captures in black-light traps showed the species was present before rat eradication. Since then, there have been no biting reports and no captures over 2 years of extensive trapping (black-light and scent traps). By contrast, the southern house mosquito, Culex quinquefasciatus, was abundant before and after rat eradication. We hypothesize that mammals were a substantial and preferred blood meal for Aedes, whereas Culex feeds mostly on seabirds. Therefore, after rat eradication, humans and seabirds alone could not support positive population growth or maintenance of Aedes. This seems to be the first documented accidental secondary extinction of a mosquito. Furthermore, it suggests that preferred host abundance can limit mosquito populations, opening new directions for controlling important disease vectors that depend on introduced species like rats.

Pisces, Anguilliformes, Moringuidae, Moringua edwardsi (Jordan and Bollman, 1889: First record in Atol das Rocas, northeastern Brazil

Directory of Open Access Journals (Sweden)

Paiva, C. C.

2010-01-01

Full Text Available Moringua edwardsi is recorded for the first time at Atol das Rocas, northeastern Brazil. Previous records of thespecies were located in the western Atlantic Ocean, from Florida to southeastern Brazil, but with many gaps between theseregions. A single specimen was collected in Atol das Rocas in July 2007 and it is deposited in the Dias da Rocha IchthyologicalCollection. The new record of M. edwardsi fills a geographic distribution gap of this species and complements the inventoryof fish species inhabiting one of the most unique marine protected areas in the world.

Electromagnetic methods for mapping freshwater lenses on Micronesian atoll islands

Science.gov (United States)

Anthony, S.S.

1992-01-01

The overall shape of freshwater lenses can be determined by applying electromagnetic methods and inverse layered-earth modeling to the mapping of atoll island freshwater lenses. Conductivity profiles were run across the width of the inhabited islands at Mwoakilloa, Pingelap, and Sapwuahfik atolls of the Pohnpei State, Federated States of Micronesia using a dual-loop, frequency-domain, electromagnetic profiling system. Six values of apparent conductivity were recorded at each sounding station and were used to interpret layer conductivities and/or thicknesses. A three-layer model that includes the unsaturated, freshwater, and saltwater zones was used to simulate apparent-conductivity data measured in the field. Interpreted results were compared with chloride-concentration data from monitoring wells and indicate that the interface between freshwater and saltwater layers, defined from electromagnetic data, is located in the upper part of the transition zone, where the chloride-concentration profile shows a rapid increase with depth. The electromagnetic method can be used to interpret the thickness of the freshwater between monitoring wells, but can not be used to interpret the thickness of freshwater from monitoring wells to the margin of an island. ?? 1992.

Whale shark economics: a valuation of wildlife tourism in South Ari Atoll, Maldives

KAUST Repository

Cagua, Edgar F.; Collins, Neal; Hancock, James; Rees, Richard

2014-01-01

Whale sharks attract large numbers of tourists, divers and snorkelers each year to South Ari Atoll in the Republic of Maldives. Yet without information regarding the use and economic extent of the attraction, it is difficult to prioritize

Studies on the intertidal macrofauna of the sandy beach at Kavarati atoll (Lakshadweep)

Digital Repository Service at National Institute of Oceanography (India)

Narayanan, B.; Sivadas, P.

The distribution of macrofauna in Kavaratti Atoll is studied in the intertidal region for over a period of 13 months. Several diversity in the faunal composition was not observed. The polychaete Scoloplos sp. and the bivalve Mesodesma glabratum were...

The radiological situation at the atolls of Mururoa and Fangataufa. Proceedings of a conference

International Nuclear Information System (INIS)

1998-08-01

In January 1996, France's programme of experiences nucleaires (nuclear experiments) at the atolls of Mururoa and Fangataufa ceased, and soon after that the French Government requested the International Atomic Energy Agency (IAEA) to carry out a study of the radiological situation at the two atolls. The study of the Radiological Situation at the Atolls of Mururoa and Fangataufa lasted almost two years, giving rise to a number of reports which are being issued by the IAEA. From 30 June to 3 July 1998, the IAEA hosted, in Vienna, an International Conference on the Study, the main purpose being to facilitate discussion of the results of the study by the scientific community and other interested parties. The Conference was presided over by Eduardo Bobadilla Lopez of Chile. These proceedings contain the opening addresses of the Conference, a presentation made by a senior representative of France's Commissariat a l'energie atomique and closing remarks by the President of the Conference, by E. Gail de Planque, Chairman of the International Advisory Committee and by Mohamed ElBaradei, Director General of the IAEA. the also contain edited texts reflecting the discussions which took place during the Conference, mainly after the technical presentations covering the various aspects of the Study. These presentations generally paralleled the Main Report on the Study, to which reference is made in the edited texts

Independent verification of plutonium decontamination on Johnston Atoll (1992--1996)

International Nuclear Information System (INIS)

Wilson-Nichols, M.J.; Wilson, J.E.; McDowell-Boyer, L.M.; Davidson, J.R.; Egidi, P.V.; Coleman, R.L.

1998-05-01

The Field Command, Defense Special Weapons Agency (FCDSWA) (formerly FCDNA) contracted Oak Ridge National Laboratory (ORNL) Environmental Technology Section (ETS) to conduct an independent verification (IV) of the Johnston Atoll (JA) Plutonium Decontamination Project by an interagency agreement with the US Department of Energy in 1992. The main island is contaminated with the transuranic elements plutonium and americium, and soil decontamination activities have been ongoing since 1984. FCDSWA has selected a remedy that employs a system of sorting contaminated particles from the coral/soil matrix, allowing uncontaminated soil to be reused. The objective of IV is to evaluate the effectiveness of remedial action. The IV contractor's task is to determine whether the remedial action contractor has effectively reduced contamination to levels within established criteria and whether the supporting documentation describing the remedial action is adequate. ORNL conducted four interrelated tasks from 1992 through 1996 to accomplish the IV mission. This document is a compilation and summary of those activities, in addition to a comprehensive review of the history of the project

Plutonium and americium behavior in coral atoll environments

International Nuclear Information System (INIS)

Noshkin, V.E.; Wong, K.M.; Jokela, T.A.; Brunk, J.L.; Eagle, R.J.

1984-01-01

Inventories of 239+240 Pu and 241 Am greatly in excess of global fallout levels persist in the benthic environments of Bikini and Enewetak Atolls. Quantities of 239+240 Pu and lesser amounts of 241 Am are continuously mobilizing from these sedimentary reservoirs. The amount of 239+240 Pu mobilized to solution at any time represents 0.08 to 0.09% of the sediment inventories to a depth of 16 cm. The mobilized 239+240 Pu has solute-like characteristics and different valence states coexist in solution - the largest fraction of the soluble plutonium is in an oxidized form (+V,VI). The adsorption of plutonium to sediments is not completely reversible because of changes that occur in the relative amounts of the mixed oxidation states in solution with time. Further, any characteristics of 239+240 Pu described at one location may not necessarily be relevant in describing its behavior elsewhere following mobilization and migration. The relative amounts of 241 Am to 239+240 Pu in the sedimentary deposits at Enewetak and Bikini may be altered in future years because of mobilization and radiological decay. Mobilization of 239+240 Pu is not a process unique to these atolls, and quantities in solution derived from sedimentary deposits can be found at other global sites. These studies in the equatorial Pacific have significance in assessing the long-term behavior of the transuranics in any marine environment. 22 references, 1 figure, 13 tables

Marine species survey of Johnson Atoll, Central Pacific Ocean June 2000 (NODC Accession 0000697)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The marine biota of Johnston atoll was surveyed for nonindigenous species in June, 2000 with observations and collections made by investigators using Scuba. Eleven...

Radiological and chemical studies of the ground water at Enewetak Atoll. 1. Sampling, field measurements, and analytical methods

International Nuclear Information System (INIS)

Marsh, K.V.; Wong, K.M.; Holladay, G.; Noshkin, V.E.; Buddemeier, R.

1975-01-01

A research program to study the ground water on several of the islets in the Enewetak Atoll is being conducted jointly by Lawrence Livermore Laboratory and the University of Hawaii under the sponsorship of ERDA Division of Biology and Environmental Research. The purpose is to provide data characterizing the ground water for possible use by returning Marshallese and to investigate the hydrology and recycling of radionuclides in an atoll environment. This first of a series of reports describes the sampling locations, field operations, and methods of analysis

Clipperton, a possible future for atoll lagoons

Science.gov (United States)

Charpy, L.; Rodier, M.; Couté, A.; Perrette-Gallet, C.; Bley-Loëz, C.

2010-09-01

Closure of the Clipperton Island atoll (10°17' N 109°13' W), now a meromictic lake, is estimated to have occurred between 1839 and 1849. It was still closed in 2005. Brackish waters in the upper layer (0-10 m) were oxygenated, while saline waters in the deep layer (>20 m) were anoxic. Allowing for the methodological difficulties of earlier measurements, the physical characteristics of the lagoon did not seem to have changed significantly since the last expedition (1980). The intermediate layer between brackish and saline waters was characterized by a strong density gradient and a temperature inversion of up to 1.6°C. Microbial activity, water exchange between the deep layer and surrounding oceanic waters and the geothermal flux hypothesis are discussed. The low DIN and SRP concentrations observed in the upper layer, despite high nutrient input by seabird droppings, reflect the high nutrient uptake by primary producers as attested by the elevated overall gross primary production (6.6 g C m-2 day-1), and high suspended photosynthetic biomass (2.23 ± 0.23 μg Chl a l-1) and production (263 ± 27 μg C l-1 day-1). Phytoplankton composition changed in 67 years with the advent of new taxa and the disappearance of previously recorded species. The freshwater phytoplanktonic community comprised 43 taxa: 37 newly identified during the expedition and 6 previously noted; 16 species previously found were not seen in 2005. The closure of the lagoon, combined with the positive precipitation-evaporation budget characteristic of the region, has induced drastic changes in lagoon functioning compared with other closed atolls.

Marine Species Survey of Johnston Atoll, Central Pacific Ocean, June 2000 (NODC Accession 0000670)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The marine biota of Johnston atoll was surveyed for non-indigenous species in June, 2000 with observations and collections made by investigators using Scuba. Eleven...

Avian disease assessment in seabirds and non-native passerines birds at Midway Atoll NWR

Science.gov (United States)

LaPointe, Dennis A.; Atkinson, Carter T.; Klavitter, John L.

2013-01-01

Midway Atoll in the Northwestern Hawaiian Islands supports the largest breeding colony of Laysan albatross (Phoebastria immutabilis) in the world and is a proposed site for the translocation of endangered Northwestern Hawaiian Island passerine birds such as the Nihoa finch (Telespiza ultima), Nihoa millerbird (Acrocephalus familiaris kingi), or Laysan finch (Telespiza cantans). On the main Hawaiian Islands, introduced mosquito-borne avian malaria (Plasmodium relictum) and avian pox (Avipoxvirus) have contributed to the extinction and decline of native Hawaiian avifauna. The mosquito vector (Culex quinquefasciatus) is present on Sand Island, Midway Atoll, where epizootics of Avipoxvirus have been reported among nestling Laysan albatross, black-footed albatross (Phoebastria nigripes), and red-tailed tropicbirds (Phaethon rubricauda) since 1963. Two introduced passerines, the common canary (Serinus canaria) and the common myna (Acridotheres tristis), are also present on Sand Island and may serve as reservoirs of mosquito-borne pathogens. Assessing disease prevalence and transmission potential at Midway Atoll National Wildlife Refuge (NWR) is a critical first step to translocation of Nihoa endemic passerines. In May 2010 and April 2012 we surveyed Midway Atoll NWR for mosquitoes and evidence of mosquito-borne disease. Although we did not observe active pox infections on albatross nestlings in May 2010, active infections were prevalent on albatross nestlings in April 2012. Presumptive diagnosis of Avipoxvirus was confirmed by PCR amplification of the Avipoxvirus 4b core protein gene from lesions collected from 10 albatross nestlings. Products were sequenced and compared to 4b core protein sequences from 28 Avipoxvirus isolates from the Hawaiian Islands and other parts of the world. Sequences from all Midway isolates were identical and formed a clade with other Avipoxvirus isolates from seabirds that was distinct from other Avipoxvirus isolates from the Hawaiian Islands

An updated dose assessment for a U.S. Nuclear Test Site - Bikini Atoll

International Nuclear Information System (INIS)

Robison, W.L.; Bogen, K.T.; Conrado, C.L.

1995-10-01

On March 1, 1954, a nuclear weapon test, code-named BRAVO, conducted at Bikini Atoll in the northern Marshall Islands contaminated the major residence island. There has been a continuing effort since 1977 to refine dose assessments for resettlement options at Bikini Atoll. Here we provide a radiological dose assessment for the main residence island, Bikini, using extensive radionuclide concentration data derived from analysis of food crops, ground water, cistern water, fish and other marine species, animals, air, and soil collected at Bikini Island as part of our continuing research and monitoring program that began in 1975. The unique composition of coral soil greatly alters the relative contribution of cesium-137 ( 137 Cs) and strontium-90 ( 90 Sr) to the total estimated dose relative to expectations based on North American and European soils. Without counter measures, cesium-137 produces 96% of the estimated dose for returning residents, mostly through uptake from the soil to terrestrial food crops but also from external gamma exposure. The doses are calculated assuming a resettlement date of 1999. The estimated maximum annual effective dose for current island conditions is 4.0 mSv when imported foods, which are now an established part of the diet, are available. The corresponding 30-, 50-, and 70-y integral effective doses are 9.1 cSv, 13 cSv, and 15 cSv, respectively. A corresponding uncertainty analysis showed that after about 5 y of residence, the 95% confidence limits on population-average dose would be ±35% of its expected value. We have evaluated various countermeasures to reduce 137 Cs in food crops. Treatment with potassium reduces the uptake of 137 Cs into food crops, and therefore the ingestion dose, to about 5% of pretreatment levels and has essentially no negative environmental consequences

Most atolls will be uninhabitable by the mid-21st century because of sea-level rise exacerbating wave-driven flooding

Science.gov (United States)

Storlazzi, Curt; Gingerich, Stephen B.; van Dongeren, Ap; Cheriton, Olivia; Swarzenski, Peter W.; Quataert, Ellen; Voss, Clifford I.; Field, Donald W.; Annamalai, Hariharasubramanian; Piniak, Greg A.; McCall, Robert T.

2018-01-01

Sea levels are rising, with the highest rates in the tropics, where thousands of low-lying coral atoll islands are located. Most studies on the resilience of these islands to sea-level rise have projected that they will experience minimal inundation impacts until at least the end of the 21st century. However, these have not taken into account the additional hazard of wave-driven overwash or its impact on freshwater availability. We project the impact of sea-level rise and wave-driven flooding on atoll infrastructure and freshwater availability under a variety of climate change scenarios. We show that, on the basis of current greenhouse gas emission rates, the nonlinear interactions between sea-level rise and wave dynamics over reefs will lead to the annual wave-driven overwash of most atoll islands by the mid-21st century. This annual flooding will result in the islands becoming uninhabitable because of frequent damage to infrastructure and the inability of their freshwater aquifers to recover between overwash events. This study provides critical information for understanding the timing and magnitude of climate change impacts on atoll islands that will result in significant, unavoidable geopolitical issues if it becomes necessary to abandon and relocate low-lying island states.

The radiological situation at the atolls of Mururoa and Fangataufa. Main report

International Nuclear Information System (INIS)

1998-01-01

Between 1966 and 1996, France conducted 193 'experiences nucleaires' (nuclear experiments - a term used by the French authorities to include the full testing of nuclear weapons and the conduct of certain safety trails) above and beneath the atolls of Mururoa and Fangataufa in the Tuamotu Archipelago of French Polynesia. All French testing ceased on 27 January 1996. Before the completion of the last series of tests the Government of France requested the International Atomic Energy Agency (IAEA) to conduct a study to assess the radiological impact of the tests. The IAEA agreed to carry out a study - the Study of the Radiological Situation at the Atolls of Mururoa and Fangataufa - for the purpose of ascertaining whether, as a consequence of the tests, radiological hazards exist now or will exist in the future, and making recommendations on the form, scale and duration of any monitoring, remedial action or follow-up action that might be required. An International Advisory Committee (IAC) was convened by the Director General of the IAEA to provide scientific direction and guidance to the IAEA in the conduct of the Study and to prepare a report on the Study's findings, conclusions and recommendations. The IAC's first formal meeting took place in Vienna on 13-14 April 1996 and its final one, also in Vienna, on 3-5 February 1998. This publication constitutes one of several reports of the IAC to Director General describing the conduct of the Study and its findings, conclusions and recommendations. The French Government provided much of the information used in the Study. This information was independently evaluated by Study participants and, where practicable, validated. In addition to the information provided by the French Government, a small amount of information had been published in the open literature on measured levels of certain radionuclides ( 60 Co, 90 Sr, 137 Cs and 239+240 Pu) in the environment of the atolls, and reports of three scientific missions to the atolls

Assessment of coastal erosion and quantification of land loss on Western Pacific atolls during the last 50 years

Science.gov (United States)

Taborosi, Danko; Zega, Mojca; Jenson, John W.

2010-05-01

The majority of islands in the tropical western Pacific are coral atolls. Most are inhabited by indigenous Micronesian populations. Local people have over the millennia developed coping strategies and response mechanisms to difficult natural conditions, including typhoons, erosion, giant swells, and flooding, as well as ensuing famines and epidemics. However, since 1990s residents of atolls in the region have been appealing for help. They indicate that their islands are being rapidly eroded along coastlines, land areas are becoming smaller, and taro patches and other vegetation are being damaged. Such concerns were corroborated by one sweeping assessment by South Pacific Applied Geoscience Commission in 1998, as well as various isolated field observations since. Evidence of recent coastal erosion is found locally on many islands, both on windward and leeward sides and ocean and lagoon facing shores. Examples include retreating modern beaches, exhumed beachrock, scouring and undercutting of vegetation, overhanging scarps, etc. In addition, a considerable number of uninhabited islets have been completely obliterated by storms in the recent past; unusually high tides and swells have swept over large populated islands, destroying homes and harming agriculture; and at least one atoll has been abandoned due to irrecoverable typhoon damage. Those problems have received much worldwide media coverage, in which they are generally presented as "sinking" of islands due to global climate change and accompanying sea level rise. In reality, modern atolls are now known to be artifacts of the Pacific mid-Holocene High-Stand, and no first-hand data are available from Pacific islands to discern what proportion of observed erosional phenomena are 1) due to local natural and anthropogenic coastal processes as opposed to global and regional changes, and 2) caused by continuous natural dynamics as opposed to episodic extreme events. It is clear that some islands are faring better than

Parallel selection on TRPV6 in human populations.

Science.gov (United States)

Hughes, David A; Tang, Kun; Strotmann, Rainer; Schöneberg, Torsten; Prenen, Jean; Nilius, Bernd; Stoneking, Mark

2008-02-27

We identified and examined a candidate gene for local directional selection in Europeans, TRPV6, and conclude that selection has acted on standing genetic variation at this locus, creating parallel soft sweep events in humans. A novel modification of the extended haplotype homozygosity (EHH) test was utilized, which compares EHH for a single allele across populations, to investigate the signature of selection at TRPV6 and neighboring linked loci in published data sets for Europeans, Asians and African-Americans, as well as in newly-obtained sequence data for additional populations. We find that all non-African populations carry a signature of selection on the same haplotype at the TRPV6 locus. The selective footprints, however, are significantly differentiated between non-African populations and estimated to be younger than an ancestral population of non-Africans. The possibility of a single selection event occurring in an ancestral population of non-Africans was tested by simulations and rejected. The putatively-selected TRPV6 haplotype contains three candidate sites for functional differences, namely derived non-synonymous substitutions C157R, M378V and M681T. Potential functional differences between the ancestral and derived TRPV6 proteins were investigated by cloning the ancestral and derived forms, transfecting cell lines, and carrying out electrophysiology experiments via patch clamp analysis. No statistically-significant differences in biophysical channel function were found, although one property of the protein, namely Ca(2+) dependent inactivation, may show functionally relevant differences between the ancestral and derived forms. Although the reason for selection on this locus remains elusive, this is the first demonstration of a widespread parallel selection event acting on standing genetic variation in humans, and highlights the utility of between population EHH statistics.

Parallel selection on TRPV6 in human populations.

Directory of Open Access Journals (Sweden)

David A Hughes

Full Text Available We identified and examined a candidate gene for local directional selection in Europeans, TRPV6, and conclude that selection has acted on standing genetic variation at this locus, creating parallel soft sweep events in humans. A novel modification of the extended haplotype homozygosity (EHH test was utilized, which compares EHH for a single allele across populations, to investigate the signature of selection at TRPV6 and neighboring linked loci in published data sets for Europeans, Asians and African-Americans, as well as in newly-obtained sequence data for additional populations. We find that all non-African populations carry a signature of selection on the same haplotype at the TRPV6 locus. The selective footprints, however, are significantly differentiated between non-African populations and estimated to be younger than an ancestral population of non-Africans. The possibility of a single selection event occurring in an ancestral population of non-Africans was tested by simulations and rejected. The putatively-selected TRPV6 haplotype contains three candidate sites for functional differences, namely derived non-synonymous substitutions C157R, M378V and M681T. Potential functional differences between the ancestral and derived TRPV6 proteins were investigated by cloning the ancestral and derived forms, transfecting cell lines, and carrying out electrophysiology experiments via patch clamp analysis. No statistically-significant differences in biophysical channel function were found, although one property of the protein, namely Ca(2+ dependent inactivation, may show functionally relevant differences between the ancestral and derived forms. Although the reason for selection on this locus remains elusive, this is the first demonstration of a widespread parallel selection event acting on standing genetic variation in humans, and highlights the utility of between population EHH statistics.

Spatial distribution of organochlorine contaminants in soil, sediment, and fish in Bikini and Enewetak Atolls of the Marshall Islands, Pacific Ocean.

Science.gov (United States)

Wang, Jun; Caccamise, Sarah A L; Wu, Liejun; Woodward, Lee Ann; Li, Qing X

2011-08-01

Several nuclear tests were performed at Enewetak and Bikini Atolls in the Marshall Islands between 1946 and 1958. The events at Bikini Atoll involved several ships that were tested for durability during nuclear explosions, and 24 vessels now rest on the bottom of the Bikini lagoon. Nine soil samples were collected from different areas on the two islands of the atoll, and eighteen sediment, nine fish, and one lobster were collected in the vicinity of the sunken ships. Organochlorine pesticides (OCPs), polychlorinated biphenyls (PCBs), and polychlorinated terphenyls (PCTs) in these samples were analyzed using gas chromatography/ion trap mass spectrometry (GC/ITMS). The average recoveries ranged from 78% to 104% for the different PCB congeners. The limits of detection (LOD) for PCBs, PCTs, DDE, DDT, and dieldrin ranged 10-50 pg g(-1). Some fish from Enewetak contained PCBs at a concentration range of 37-137 ng g(-1), dry weight (dw), and most of the soils from Enewetak showed evidence of PCBs (22-392 ng g(-1)dw). Most of the Bikini lagoon sediment samples contained PCBs, and the highest was the one collected from around the Saratoga, an aircraft carrier (1555 ng g(-1)dw). Some of the fish samples, most of the soil samples, and only one of the sediment samples contained 2,2-bis(4-chlorophenyl)-1,1-dichloroethylene (DDE) and PCBs. In addition to PCBs, the soils from Enewetak Atoll contained PCTs. PCTs were not detected in the sediment samples from Bikini Atoll. The results suggest local pollution sources of PCBs, PCTs, and OCPs. Copyright © 2011. Published by Elsevier Ltd.

The radiological situation at the atolls of Mururoa and Fangataufa. Summary report

International Nuclear Information System (INIS)

1998-01-01

Between 1966 and 1996, France conducted 193 'experiences nucleaires' (nuclear experiments - a term used by the French authorities to include the full testing of nuclear weapons and the conduct of certain safety trails) above and beneath the atolls of Mururoa and Fangataufa in the Tuamotu Archipelago of French Polynesia. All French testing ceased on 27 January 1996. Before the completion of the last series of tests the Government of France requested the International Atomic Energy Agency (IAEA) to conduct a study to assess the radiological impact of the tests. The IAEA agreed to carry out a study - the Study of the Radiological Situation at the Atolls of Mururoa and Fangataufa - for the purpose of ascertaining whether, as a consequence of the tests, radiological hazards exist now or will exist in the future, and making recommendations on the form, scale and duration of any monitoring, remedial action or follow-up action that might be required. An International Advisory Committee (IAC) was concerned by the Director General of the IAEA to provide scientific direction and guidance to the IAEA in the conduct of the Study and to prepare a report on the Study's findings, conclusions and recommendations. The IAC's first formal meeting took place in Vienna on 13-14 April 1996 and its final one, also in Vienna, on 3-5 February 1998. The Summary Report presents a comprehensive summary of the Main Report, including its findings, conclusions and recommendations. The purpose of this Summary Report on the Study of the Radiological Conditions at the Atolls of Mururoa and Fangataufa is to present a summary account of the Study together with its findings, conclusions and recommendation for the benefit of a wider audience. For a comprehensive scientific account, the reader is referred to the Main Report and the detailed Technical Report for the Study

A Bayesian random effects discrete-choice model for resource selection: Population-level selection inference

Science.gov (United States)

Thomas, D.L.; Johnson, D.; Griffith, B.

2006-01-01

Modeling the probability of use of land units characterized by discrete and continuous measures, we present a Bayesian random-effects model to assess resource selection. This model provides simultaneous estimation of both individual- and population-level selection. Deviance information criterion (DIC), a Bayesian alternative to AIC that is sample-size specific, is used for model selection. Aerial radiolocation data from 76 adult female caribou (Rangifer tarandus) and calf pairs during 1 year on an Arctic coastal plain calving ground were used to illustrate models and assess population-level selection of landscape attributes, as well as individual heterogeneity of selection. Landscape attributes included elevation, NDVI (a measure of forage greenness), and land cover-type classification. Results from the first of a 2-stage model-selection procedure indicated that there is substantial heterogeneity among cow-calf pairs with respect to selection of the landscape attributes. In the second stage, selection of models with heterogeneity included indicated that at the population-level, NDVI and land cover class were significant attributes for selection of different landscapes by pairs on the calving ground. Population-level selection coefficients indicate that the pairs generally select landscapes with higher levels of NDVI, but the relationship is quadratic. The highest rate of selection occurs at values of NDVI less than the maximum observed. Results for land cover-class selections coefficients indicate that wet sedge, moist sedge, herbaceous tussock tundra, and shrub tussock tundra are selected at approximately the same rate, while alpine and sparsely vegetated landscapes are selected at a lower rate. Furthermore, the variability in selection by individual caribou for moist sedge and sparsely vegetated landscapes is large relative to the variability in selection of other land cover types. The example analysis illustrates that, while sometimes computationally intense, a

Opportunity for natural selection among some selected population groups of Northeast India.

Science.gov (United States)

Das, Farida Ahmed; Mithun, Sikdar

2010-05-01

Selection potential based on differential fertility and mortality has been computed for seven population groups inhabiting different geographical locations of Northeast India. Crow's as well as Johnston and Kensinger's index have been used for the present purpose. Irrespective of the methodology, the total index of selection was found to be highest among the Deoris followed by the Kaibartas. The lowest selection index was found among the Oraon population. If the relative contribution of fertility and mortality components to the total index is considered to be multiplicative, it is observed that in all these communities the fertility component exceeds that of mortality component, which may indicate initiation of demographic transitional phase in the selected populations with the betterment of healthcare and socioeconomic condition within the last few decades.

Radiation-induced risk of resettling Bikini atoll. Final report, November 7, 1981-May 28, 1982

International Nuclear Information System (INIS)

Kohn, H.I.; Dreyer, N.A.

1982-01-01

The Department of Energy (DOE) has concluded that the Bikini atoll is unsafe for resettlement. In response to the Bikinians' request for an independent review, we have examined the following DOE findings: (a) radionuclide contamination of Eneu and Bikini Islands, (b) radiation dosage to those who might resettle the islands, and (c) risks to the health of such settlers. We are in practical agreement with the DOE estimates. Resettlement of either island in 1983 would lead to a range of annual or 30-year cumulative doses that exceed the Federal Radiation Council (FRC) guides for the general population, but not those for occupation exposure. By 2013 resettlement of Eneu probably would be permissible. The principal source of radiation dose is local food, especially coconut, owing to contamination of the soil by cesium-137. A precise estimate of dose is impossible. The availability of imported foods would lessen local food consumption, but not sufficiently to meet the FRC guides for the general population. The 30-year cumulative index dose is 61 (25-122) rem for Bikini, and about 8 (3-16) rem for Eneu

Selection signatures in worldwide sheep populations.

OpenAIRE

Fariello, Maria-Ines; Servin, Bertrand; Tosser-Klopp, Gwenola; Rupp, Rachel; Moreno, Carole; San Cristobal, Magali; Boitard, Simon; Drögemüller, Cord; The International Sheep Genomics Consortium, ISGC

2014-01-01

The diversity of populations in domestic species offers great opportunities to study genome response to selection. The recently published Sheep HapMap dataset is a great example of characterization of the world wide genetic diversity in sheep. In this study, we re-analyzed the Sheep HapMap dataset to identify selection signatures in worldwide sheep populations. Compared to previous analyses, we made use of statistical methods that (i) take account of the hierarchical structure of sheep popula...

Selection Signatures in Worldwide Sheep Populations

OpenAIRE

Fariello, Maria-Ines; Servin, Bertrand; Tosser-Klopp, Gwenola; Rupp, Rachel; Moreno, Carole; Cristobal, Magali San; Boitard, Simon

2014-01-01

The diversity of populations in domestic species offers great opportunities to study genome response to selection. The recently published Sheep HapMap dataset is a great example of characterization of the world wide genetic diversity in sheep. In this study, we re-analyzed the Sheep HapMap dataset to identify selection signatures in worldwide sheep populations. Compared to previous analyses, we made use of statistical methods that (i) take account of the hierarchical structure of sheep popula...

The Giant Tortoise Population of Aldabra (Cryptodira: Testudinidae ...

African Journals Online (AJOL)

The preliminary results of a study of the endemic giant tortoise population of Aldabra Atoll in the Indian Ocean (Geochelone gigatea Schweiger) are briefly described. Their number would appear to have increased dramatically since the turn of the century to their present level of some 141 000 individuals. Crude estimates of ...

On subset selection from Logistic populations

NARCIS (Netherlands)

Laan, van der P.

1990-01-01

Some distributional results are derived for subset selection from Logistic populations, differing only in their location parameter. The probability of correct selection is determined. Exact and numerical results concerning the expected subset size are presented.

CRED REA Algal Assessments, Pearl and Hermes Atoll, Northwestern Hawaiian Islands, 2002 (NODC Accession 0010352)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Twelve quadrats were sampled along 2 consecutively-placed, 25m transect lines as part of Rapid Ecological Assessments conducted at 14 sites at Pearl and Hermes Atoll...

CRED REA Algal Assessments, Pearl and Hermes Atoll, Northwestern Hawaiian Islands 2003 (NODC Accession 0010352)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Twelve quadrats were sampled along 2 consecutively-placed, 25m transect lines as part of Rapid Ecological Assessments conducted at 15 sites at Pearl and Hermes Atoll...

Groundwater movement on a Low-lying Carbonate Atoll Island and its Response to Climatic and Sea-level Fluctuations: Roi Namur, Republic of the Marshall Islands

Science.gov (United States)

Oberle, F. J.; Swarzenski, P. W.; Storlazzi, C. D.

2017-12-01

Atoll islands, most of which only average 1-2 meters above today's sea level, provide a tremendous natural laboratory in which to study and better understand the intensifying impacts of high rates of sea-level rise on tropical reef-lined islands. These islands are unique and on the frontline of negative societal impacts due to their geologic structure and limited water supply. Groundwater resources on atolls are typically minimal due to the low elevation and small surface area of the islands and are also subject to recurring droughts, and more frequent, storm-driven seawater overwash events. Although groundwater is the principal means of freshwater storage on atoll islands and is a major factor in determining the overall sustainability of island settlements, hydrological data on how an aquifer will response to changes in sea-level rise or storm-driven overwash remain limited. Here we present high-resolution time series hydrogeological and geochemical data from a 16 month study to determine the role of an atoll's carbonate geology, land use, and atmospheric and oceanographic forcing in driving coastal groundwater exchange including submarine groundwater discharge on the island of Roi-Namur on Kwajalein Atoll in the Republic of the Marshall Islands. This information can provide new estimates on the recovery and resilience of coastal groundwater resources on similar islands that are expected to experience climate change-driven perturbations.

Forecasting the impact of storm waves and sea-level rise on Midway Atoll and Laysan Island within the Papahānaumokuākea Marine National Monument—a comparison of passive versus dynamic inundation models

Science.gov (United States)

Storlazzi, Curt D.; Berkowitz, Paul; Reynolds, Michelle H.; Logan, Joshua B.

2013-01-01

Two inundation events in 2011 underscored the potential for elevated water levels to damage infrastructure and affect terrestrial ecosystems on the low-lying Northwestern Hawaiian Islands in the Papahānaumokuākea Marine National Monument. The goal of this study was to compare passive "bathtub" inundation models based on geographic information systems (GIS) to those that include dynamic water levels caused by wave-induced set-up and run-up for two end-member island morphologies: Midway, a classic atoll with islands on the shallow (2-8 m) atoll rim and a deep, central lagoon; and Laysan, which is characterized by a deep (20-30 m) atoll rim and an island at the center of the atoll. Vulnerability to elevated water levels was assessed using hindcast wind and wave data to drive coupled physics-based numerical wave, current, and water-level models for the atolls. The resulting model data were then used to compute run-up elevations using a parametric run-up equation under both present conditions and future sea-level-rise scenarios. In both geomorphologies, wave heights and wavelengths adjacent to the island shorelines increased more than three times and four times, respectively, with increasing values of sea-level rise, as more deep-water wave energy could propagate over the atoll rim and larger wind-driven waves could develop on the atoll. Although these increases in water depth resulted in decreased set-up along the islands’ shorelines, the larger wave heights and longer wavelengths due to sea-level rise increased the resulting wave-induced run-up. Run-up values were spatially heterogeneous and dependent on the direction of incident wave direction, bathymetry, and island configuration. Island inundation was modeled to increase substantially when wave-driven effects were included, suggesting that inundation and impacts to infrastructure and terrestrial habitats will occur at lower values of predicted sea-level rise, and thus sooner in the 21st century, than suggested

Opportunity for natural selection among some selected population groups of Northeast India

Science.gov (United States)

Das, Farida Ahmed; Mithun, Sikdar

2010-01-01

BACKGROUND: Selection potential based on differential fertility and mortality has been computed for seven population groups inhabiting different geographical locations of Northeast India. MATERIALS AND METHODS: Crow’s as well as Johnston and Kensinger’s index have been used for the present purpose. RESULTS AND CONCLUSION: Irrespective of the methodology, the total index of selection was found to be highest among the Deoris followed by the Kaibartas. The lowest selection index was found among the Oraon population. If the relative contribution of fertility and mortality components to the total index is considered to be multiplicative, it is observed that in all these communities the fertility component exceeds that of mortality component, which may indicate initiation of demographic transitional phase in the selected populations with the betterment of healthcare and socioeconomic condition within the last few decades. PMID:21031053

Coral reef fish assemblages at Clipperton Atoll (Eastern Tropical Pacific and their relationship with coral cover

Directory of Open Access Journals (Sweden)

Aurora M. Ricart

2016-11-01

Full Text Available Clipperton Atoll, one of the most isolated coral reefs worldwide, is of great scientific interest due to its geomorphology and high levels of endemism. This study explored the reef fish assemblage structure of Clipperton Atoll and its relationship with live coral cover. Nine stations were sampled at three sites and three depths (6, 12 and 20 m around the reef, measuring fish species richness and biomass and hermatypic coral cover (at genus level. We evaluated variation in species richness, biomass and diversity of fish assemblages among sites and depths, as well as the relationship between the entire fish assemblage composition and live coral cover. The results showed that species richness and biomass were similar among sites, but differed across depths, increasing with depth. In contrast, diversity differed among sites but not among depths. Multivariate analyses indicated that fish assemblage composition differed among sites and depths in relation to changes in cover of coral of the genera Pocillopora, Porites, Pavona and Leptoseris, which dominate at different depths. The results showed that fish species richness and diversity were low at Clipperton Atoll and that, in isolated coral reefs with a low habitat heterogeneity and low human disturbance, live coral cover has a significant influence on the spatial variation of the reef fish assemblages. This study highlights the importance of coral habitat structure in shaping coral reef fish assemblages.

Benthic Habitat Maps for Rose Atoll Marine National Monument in American Samoa from 2004 to 2010

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Benthic habitat maps for Rose Atoll, American Samoa were derived from high resolution, multispectral satellite imagery for 2004, 2006, and 2010. The benthic habitat...

Contraction of the southeast Polynesian interaction sphere and resource depression on Temoe Atoll

International Nuclear Information System (INIS)

Weisler, M.I.

2004-01-01

The southeast Polynesian interaction sphere, involving most frequently islands in Mangareva and the Pitcairn group, was active for at least five centuries beginning about AD 1000. By western contact in the early seventeenth century, all islands in the Pitcairn group were abandoned, signalling a contraction of the sphere. Systematic survey and excavations were conducted on Temoe Atoll, the next closest island to the main Mangareva group, to determine the spatial and temporal boundaries of that contraction. The excavations in five late prehistoric habitation sites are described, and provide the first subsistence remains from the atoll. These consist of 21,590 bones of fish, bird, turtle, Pacific rat and human as well as 25 kg of shell midden, mostly Turbo gastropods. Reconstructed weights of parrotfish (Scaridae), by far the most common fish taxon, illustrate a decline in size during late prehistory, pointing to exploitation depression. The x-ray fluorescence analysis of volcanic artefacts documents ties with the main Mangarewa group, suggesting that the reduced interaction sphere lasted until the early nineteenth century when Temoe was finally abandoned. (author). 34 refs., 10 figs., 6 tabs

Phenotypic selection in natural populations: what limits directional selection?

Science.gov (United States)

Kingsolver, Joel G; Diamond, Sarah E

2011-03-01

Studies of phenotypic selection document directional selection in many natural populations. What factors reduce total directional selection and the cumulative evolutionary responses to selection? We combine two data sets for phenotypic selection, representing more than 4,600 distinct estimates of selection from 143 studies, to evaluate the potential roles of fitness trade-offs, indirect (correlated) selection, temporally varying selection, and stabilizing selection for reducing net directional selection and cumulative responses to selection. We detected little evidence that trade-offs among different fitness components reduced total directional selection in most study systems. Comparisons of selection gradients and selection differentials suggest that correlated selection frequently reduced total selection on size but not on other types of traits. The direction of selection on a trait often changes over time in many temporally replicated studies, but these fluctuations have limited impact in reducing cumulative directional selection in most study systems. Analyses of quadratic selection gradients indicated stabilizing selection on body size in at least some studies but provided little evidence that stabilizing selection is more common than disruptive selection for most traits or study systems. Our analyses provide little evidence that fitness trade-offs, correlated selection, or stabilizing selection strongly constrains the directional selection reported for most quantitative traits.

Population Genetics and Natural Selection in Rheumatic Disease.

Science.gov (United States)

Ramos, Paula S

2017-08-01

Human genetic diversity is the result of population genetic forces. This genetic variation influences disease risk and contributes to health disparities. Natural selection is an important influence on human genetic variation. Because immune and inflammatory function genes are enriched for signals of positive selection, the prevalence of rheumatic disease-risk alleles seen in different populations is partially the result of differing selective pressures (eg, due to pathogens). This review summarizes the genetic regions associated with susceptibility to different rheumatic diseases and concomitant evidence for natural selection, including known agents of selection exerting selective pressure in these regions. Copyright © 2017 Elsevier Inc. All rights reserved.

Land-use change and managed aquifer recharge effects on the hydrogeochemistry of two contrasting atoll island aquifers, Roi-Namur Island, Republic of the Marshall Islands

Science.gov (United States)

Hejazian, Mehrdad; Gurdak, Jason J.; Swarzenski, Peter W.; Odigie, Kingsley; Storlazzi, Curt

2017-01-01

Freshwater resources on low-lying atoll islands are highly vulnerable to climate change and sea-level rise. In addition to rainwater catchment, groundwater in the freshwater lens is a critically important water resource on many atoll islands, especially during drought. Although many atolls have high annual rainfall rates, dense natural vegetation and high evapotranspiration rates can limit recharge to the freshwater lens. Here we evaluate the effects of land-use/land-cover change and managed aquifer recharge on the hydrogeochemistry and supply of groundwater on Roi-Namur Island, Republic of the Marshall Islands. Roi-Namur is an artificially conjoined island that has similar hydrogeology on the Roi and Namur lobes, but has contrasting land-use/land-cover and managed aquifer recharge only on Roi. Vegetation removal and managed aquifer recharge operations have resulted in an estimated 8.6 x 105 m3 of potable groundwater in the freshwater lens on Roi, compared to only 1.6 x 104 m3 on Namur. We use groundwater samples from a suite of 33 vertically nested monitoring wells, statistical testing, and geochemical modeling using PHREEQC to show that the differences in land-use/land-cover and managed aquifer recharge on Roi and Namur have a statistically significant effect on several groundwater-quality parameters and the controlling geochemical processes. Results also indicate a seven-fold reduction in the dissolution of carbonate rock in the freshwater lens and overlying vadose zone of Roi compared to Namur. Mixing of seawater and the freshwater lens is a more dominant hydrogeochemical process on Roi because of the greater recharge and flushing of the aquifer with freshwater as compared to Namur. In contrast, equilibrium processes and dissolution-precipitation non-equilibrium reactions are more dominant on Namur because of the longer residence times relative to the rate of geochemical reactions. Findings from Roi-Namur Island support selective land-use/land-cover change and

137Cs inter-plant concentration ratios provide a predictive tool for coral atolls with distinct benefits over transfer factors

International Nuclear Information System (INIS)

Robison, William L.; Hamilton, Terry F.; Bogen, Kenneth T.; Conrado, Cynthia L.; Kehl, Steven R.

2008-01-01

Inter-plant concentration ratios (IPCR) [Bq g -1137 Cs in coral atoll tree food crops/Bq g -1137 Cs in leaves of native plant species whose roots share a common soil volume] can replace transfer factors (TF) to predict 137 Cs concentration in tree food crops in a contaminated area with an aged source term. The IPCR strategy has significant benefits relative to TF strategy for such purposes in the atoll ecosystem. IPCR strategy applied to specific assessments takes advantage of the fact that tree roots naturally integrate 137 Cs over large volumes of soil. Root absorption of 137 Cs replaces large-scale, expensive soil sampling schemes to reduce variability in 137 Cs concentration due to inhomogeneous radionuclide distribution. IPCR [drinking-coconut meat (DCM)/Scaevola (SCA) and Tournefortia (TOU) leaves (native trees growing on all atoll islands)] are log-normally distributed (LND) with geometric standard deviation (GSD) = 1.85. TF for DCM from Enewetak, Eneu, Rongelap and Bikini Atolls are LND with GSDs of 3.5, 3.0, 2.7, and 2.1, respectively. TF GSD for Rongelap copra coconut meat is 2.5. IPCR of Pandanus fruit to SCA and TOU leaves are LND with GSD = 1.7 while TF GSD is 2.1. Because IPCR variability is much lower than TF variability, relative sampling error of an IPCR field sample mean is up 6- to 10-fold lower than that of a TF sample mean if sample sizes are small (10-20). Other IPCR advantages are that plant leaf samples are collected and processed in far less time with much less effort and cost than soil samples

Subset selection for an epsilon-best population : efficiency results

NARCIS (Netherlands)

Laan, van der P.

1991-01-01

An almost best or an \\epsilon-best population is defined as a population with location parameter on a distance not larger than \\epsilon (\\geq 0) from the best population (with largest value of the location parameter). For the subset selection tables with the relative efficiency of selecting an

Trophic interactions between larger crocodylians and giant tortoises on Aldabra Atoll, Western Indian Ocean, during the Late Pleistocene.

Science.gov (United States)

Scheyer, Torsten M; Delfino, Massimo; Klein, Nicole; Bunbury, Nancy; Fleischer-Dogley, Frauke; Hansen, Dennis M

2018-01-01

Today, the UNESCO World Heritage Site of Aldabra Atoll is home to about 100 000 giant tortoises, Aldabrachelys gigantea , whose fossil record goes back to the Late Pleistocene. New Late Pleistocene fossils (age ca . 90-125 000 years) from the atoll revealed some appendicular bones and numerous shell fragments of giant tortoises and cranial and postcranial elements of crocodylians. Several tortoise bones show circular holes, pits and scratch marks that are interpreted as bite marks of crocodylians. The presence of a Late Pleistocene crocodylian species, Aldabrachampsus dilophus , has been known for some time, but the recently found crocodylian remains presented herein are distinctly larger than those previously described. This indicates the presence of at least some larger crocodylians, either of the same or of a different species, on the atoll. These larger crocodylians, likely the apex predators in the Aldabra ecosystem at the time, were well capable of inflicting damage on even very large giant tortoises. We thus propose an extinct predator-prey interaction between crocodylians and giant tortoises during the Late Pleistocene, when both groups were living sympatrically on Aldabra, and we discuss scenarios for the crocodylians directly attacking the tortoises or scavenging on recently deceased animals.

Migration from atolls as climate change adaptation

DEFF Research Database (Denmark)

Birk, Thomas Ladegaard Kümmel; Rasmussen, Kjeld

2014-01-01

to migration that reduce the efficacy of positive outcomes to both migrants and their home communities, including high transport costs and problems in gaining access to housing, employment and government services in urban destination areas. If it is accepted that voluntary migration may play a positive role...... that migration currently improves access to financial and social capital, reduces pressure on natural resources and makes island communities less vulnerable to extreme weather events and other shocks — all factors that contribute positively to adaptive capacity. It also shows that there are major barriers...... in adaptation to climate change in exposed atoll communities, addressing some of the barriers to migration seems logical. This may be done by efforts to stimulate migrant income opportunities, by improving migrant living conditions and by improving the transport services to the islands....

Rickettsial pathogens and arthropod vectors of medical and veterinary significance on Kwajalein Atoll and Wake Island

Directory of Open Access Journals (Sweden)

Durden, L.

2012-05-01

Full Text Available Modern surveys of ectoparasites and potential vector-borne pathogens in the Republic of the Marshall Islands and Wake Island are poorly documented. We report on field surveys of ectoparasites from 2010 with collections from dogs, cats, and rats. Five ectoparasites were identified: the cat flea Ctenocephalides felis, a sucking louse Hoplopleura pacifica, the mites Laelaps nuttalli and Radfordia ensifera, and the brown dog tickRhipicephalus sanguineus. Ectoparasites were screened for rickettsial pathogens. DNA from Anaplasma platys, a Coxiella symbiont of Rhipicephalus sanguineus, anda Rickettsia sp. were identified by PCR and DNA sequencing from ticks and fleas on Kwajalein Atoll. An unidentified spotted fever group Rickettsia was detected in a pool of Laelaps nuttalli and Hoplopleura pacifica from Wake Island. The records of Hoplopleura pacifica, Laelaps nuttalli, and Radfordia ensifera and the pathogens are new for Kwajalein Atoll and Wake Island.

The radiological situation at the atolls of Mururoa and Fangataufa. Technical report. V. 3. Inventory of radionuclides underground at the atolls

International Nuclear Information System (INIS)

1998-08-01

The objective of Working Group 3 was to independently estimate the underground inventories of radionuclides, at the French nuclear test site on the atolls of Mururoa and Fangataufa, and to estimate the distribution of radionuclides between four major components - lava, rubble, gas and water - that determines the mobility of radionuclides in the geosphere. The group also provided a summary of the critical damage dimensions, such as the cavity radius, fissure zone radius and the height of the chimney. As a lot of dimensional data were provided by the French Liaison Office the focus of this report has been to compare these data with experience gained from other test sites in the world

Selective population rate coding: a possible computational role of gamma oscillations in selective attention.

Science.gov (United States)

Masuda, Naoki

2009-12-01

Selective attention is often accompanied by gamma oscillations in local field potentials and spike field coherence in brain areas related to visual, motor, and cognitive information processing. Gamma oscillations are implicated to play an important role in, for example, visual tasks including object search, shape perception, and speed detection. However, the mechanism by which gamma oscillations enhance cognitive and behavioral performance of attentive subjects is still elusive. Using feedforward fan-in networks composed of spiking neurons, we examine a possible role for gamma oscillations in selective attention and population rate coding of external stimuli. We implement the concept proposed by Fries ( 2005 ) that under dynamic stimuli, neural populations effectively communicate with each other only when there is a good phase relationship among associated gamma oscillations. We show that the downstream neural population selects a specific dynamic stimulus received by an upstream population and represents it by population rate coding. The encoded stimulus is the one for which gamma rhythm in the corresponding upstream population is resonant with the downstream gamma rhythm. The proposed role for gamma oscillations in stimulus selection is to enable top-down control, a neural version of time division multiple access used in communication engineering.

Anthropogenic 236U recorded in annually banded coral skeleton at Majuro atoll, the equatorial Pacific

International Nuclear Information System (INIS)

Sakaguchi, Aya; Eto, Asuka; Takahashi, Yoshio; Steier, Peter; Yamazaki, Atsuko; Watanabe, Tsuyoshi; Sasaki, Keiichi; Yamano, Hiroya

2013-01-01

Historical 236 U/ 238 U atom ratio and concentration of 236 U were determined by Accelerator Mass Spectrometry (AMS) in skeletons of dated modern coral core sample collected from Majuro atoll, equatorial Pacific, to reconstruct anthropogenic 236 U inputs to the Equatorial Pacific. The maximum hydrogen bomb-pulses of 236 U/ 238 U and 236 U concentration, 2.83x10 -9 and 1.85x10 7 atom/g, in an annually resolved coral core were captured in 1954 (Operation Castle at Bikini and Enewetok atolls). The values were abruptly decreased in a few years, and they have been gradually decreased over time. Our results allow studies of not only the present distribution pattern, but gives access to the temporal evolution of 236 U in surface seawater of North Equatorial Current which is introduced to the Japan Sea and the North West Pacific Ocean as Kuroshio and Tsushima currents over the past decades. (author)

Emerging prion disease drives host selection in a wildlife population

Science.gov (United States)

Robinson, Stacie J.; Samuel, Michael D.; Johnson, Chad J.; Adams, Marie; McKenzie, Debbie I.

2012-01-01

Infectious diseases are increasingly recognized as an important force driving population dynamics, conservation biology, and natural selection in wildlife populations. Infectious agents have been implicated in the decline of small or endangered populations and may act to constrain population size, distribution, growth rates, or migration patterns. Further, diseases may provide selective pressures that shape the genetic diversity of populations or species. Thus, understanding disease dynamics and selective pressures from pathogens is crucial to understanding population processes, managing wildlife diseases, and conserving biological diversity. There is ample evidence that variation in the prion protein gene (PRNP) impacts host susceptibility to prion diseases. Still, little is known about how genetic differences might influence natural selection within wildlife populations. Here we link genetic variation with differential susceptibility of white-tailed deer to chronic wasting disease (CWD), with implications for fitness and disease-driven genetic selection. We developed a single nucleotide polymorphism (SNP) assay to efficiently genotype deer at the locus of interest (in the 96th codon of the PRNP gene). Then, using a Bayesian modeling approach, we found that the more susceptible genotype had over four times greater risk of CWD infection; and, once infected, deer with the resistant genotype survived 49% longer (8.25 more months). We used these epidemiological parameters in a multi-stage population matrix model to evaluate relative fitness based on genotype-specific population growth rates. The differences in disease infection and mortality rates allowed genetically resistant deer to achieve higher population growth and obtain a long-term fitness advantage, which translated into a selection coefficient of over 1% favoring the CWD-resistant genotype. This selective pressure suggests that the resistant allele could become dominant in the population within an

33 CFR 334.1440 - Pacific Ocean at Kwajalein Atoll, Marshall Islands; missile testing area.

Science.gov (United States)

2010-07-01

... 33 Navigation and Navigable Waters 3 2010-07-01 2010-07-01 false Pacific Ocean at Kwajalein Atoll, Marshall Islands; missile testing area. 334.1440 Section 334.1440 Navigation and Navigable Waters CORPS OF ENGINEERS, DEPARTMENT OF THE ARMY, DEPARTMENT OF DEFENSE DANGER ZONE AND RESTRICTED AREA REGULATIONS § 334.1440 Pacific Ocean at Kwajalein...

137Cs Inter-Plant Concentration Ratios Provide a Predictive Tool for Coral Atolls with Distinct Benefits Over Transfer Factors

Energy Technology Data Exchange (ETDEWEB)

Robison, W L; Hamilton, T F; Bogen, K; Corado, C L; Kehl, S R

2007-07-17

Inter-plant concentration ratios (IPCR), [Bq g{sup -1} {sup 137}Cs in coral atoll tree food-crops/Bq g{sup -1} {sup 137}Cs in leaves of native plant species whose roots share a common soil volume], can replace transfer factors (TF) to predict {sup 137}Cs concentration in tree food-crops in a contaminated area with an aged source term. The IPCR strategy has significant benefits relative to TF strategy for such purposes in the atoll ecosystem. IPCR strategy applied to specific assessments takes advantage of the fact tree roots naturally integrate 137Cs over large volumes of soil. Root absorption of {sup 137}Cs replaces large-scale, expensive soil sampling schemes to reduce variability in {sup 137}Cs concentration due to inhomogeneous radionuclide distribution. IPCR [drinking-coconut meat (DCM)/Scaevola (SCA) and Tournefortia (TOU) leaves (native trees growing on all atoll islands)] are log normally distributed (LND) with geometric standard deviation (GSD) = 1.85. TF for DCM from Enewetak, Eneu, Rongelap and Bikini Atolls are LND with GSD's of 3.5, 3.0, 2.7, and 2.1, respectively. TF GSD for Rongelap copra coconut meat is 2.5. IPCR of Pandanus fruit to SCA and TOU leaves are LND with GSD = 1.7 while TF GSD is 2.1. Because IPCR variability is much lower than TF variability, relative sampling error of an IPCR field sample mean is up 6- to 10-fold lower than that of a TF sample mean if sample sizes are small (10 to 20). Other IPCR advantages are that plant leaf samples are collected and processed in far less time with much less effort and cost than soil samples.

Geochronology and subsurface stratigraphy of Pukapuka and Rakahanga atolls, Cook Islands: Late Quaternary reef growth and sea level history

Science.gov (United States)

Gray, S.C.; Hein, J.R.; Hausmann, R.; Radtke, U.

1992-01-01

Eustatic sea-level cycles superposed on thermal subsidence of an atoll produce layers of high sea-level reefs separated by erosional unconformities. Coral samples from these reefs from cores drilled to 50 m beneath the lagoons of Pukapuka and Rakahanga atolls, northern Cook Islands give electron spin resonance (ESR) and U-series ages ranging from the Holocene to 600,000 yr B.P. Subgroups of these ages and the stratigraphic position of their bounding unconformities define at least 5 periods of reef growth and high sea-level (0-9000 yr B.P., 125,000-180,000 yr B.P., 180,000-230,000 yr B.P., 300,000-460,000 yr B.P., 460,000-650,000 yr B.P.). Only two ages fall within error of the last interglacial high sea-level stand (???125,000-135,000 yr B.P.). This paucity of ages may result from extensive erosion of the last intergracial reef. In addition, post-depositional isotope exchange may have altered the time ages of three coral samples to apparent ages that fall within glacial stage 6. For the record to be preserved, vertical accretion during rising sea-level must compensate for surface lowering from erosion during sea-level lowstands and subsidence of the atoll; erosion rates (6-63 cm/1000 yr) can therefore be calculated from reef accretion rates (100-400 cm/1000 yr), subsidence rates (2-6 cm/1000 yr), and the duration of island submergence (8-15% of the last 600,000 yr). The stratigraphy of coral ages indicates island subsidence rates of 4.5 ?? 2.8 cm/1000 yr for both islands. A model of reef growth and erosion based on the stratigraphy of the Cook Islands atolls suggests average subsidence and erosion rates of between 3-6 and 15-20 cm/1000 yr, respectively. ?? 1992.

Population studies of echinoderms and growth and mortality of sea cucumbers

International Nuclear Information System (INIS)

Ebert, T.A.

1979-01-01

Progress is reported on the following studies: methods of collecting sea cucumbers; determination of growth rates of plates of the calcareous ring; use of growth parameters and a length-frequency distribution to estimate mortality and population turnover; movement of materials through the atoll ecosystem; and autoradiographic studies on spines of sea urchins

A probabilistic method for testing and estimating selection differences between populations.

Science.gov (United States)

He, Yungang; Wang, Minxian; Huang, Xin; Li, Ran; Xu, Hongyang; Xu, Shuhua; Jin, Li

2015-12-01

Human populations around the world encounter various environmental challenges and, consequently, develop genetic adaptations to different selection forces. Identifying the differences in natural selection between populations is critical for understanding the roles of specific genetic variants in evolutionary adaptation. Although numerous methods have been developed to detect genetic loci under recent directional selection, a probabilistic solution for testing and quantifying selection differences between populations is lacking. Here we report the development of a probabilistic method for testing and estimating selection differences between populations. By use of a probabilistic model of genetic drift and selection, we showed that logarithm odds ratios of allele frequencies provide estimates of the differences in selection coefficients between populations. The estimates approximate a normal distribution, and variance can be estimated using genome-wide variants. This allows us to quantify differences in selection coefficients and to determine the confidence intervals of the estimate. Our work also revealed the link between genetic association testing and hypothesis testing of selection differences. It therefore supplies a solution for hypothesis testing of selection differences. This method was applied to a genome-wide data analysis of Han and Tibetan populations. The results confirmed that both the EPAS1 and EGLN1 genes are under statistically different selection in Han and Tibetan populations. We further estimated differences in the selection coefficients for genetic variants involved in melanin formation and determined their confidence intervals between continental population groups. Application of the method to empirical data demonstrated the outstanding capability of this novel approach for testing and quantifying differences in natural selection. © 2015 He et al.; Published by Cold Spring Harbor Laboratory Press.

Background Selection in Partially Selfing Populations

Science.gov (United States)

Roze, Denis

2016-01-01

Self-fertilizing species often present lower levels of neutral polymorphism than their outcrossing relatives. Indeed, selfing automatically increases the rate of coalescence per generation, but also enhances the effects of background selection and genetic hitchhiking by reducing the efficiency of recombination. Approximations for the effect of background selection in partially selfing populations have been derived previously, assuming tight linkage between deleterious alleles and neutral loci. However, loosely linked deleterious mutations may have important effects on neutral diversity in highly selfing populations. In this article, I use a general method based on multilocus population genetics theory to express the effect of a deleterious allele on diversity at a linked neutral locus in terms of moments of genetic associations between loci. Expressions for these genetic moments at equilibrium are then computed for arbitrary rates of selfing and recombination. An extrapolation of the results to the case where deleterious alleles segregate at multiple loci is checked using individual-based simulations. At high selfing rates, the tight linkage approximation underestimates the effect of background selection in genomes with moderate to high map length; however, another simple approximation can be obtained for this situation and provides accurate predictions as long as the deleterious mutation rate is not too high. PMID:27075726

Phenotypic selection varies with pollination intensity across populations of Sabatia angularis.

Science.gov (United States)

Emel, Sarah L; Franks, Steven J; Spigler, Rachel B

2017-07-01

Pollinators are considered primary selective agents acting on plant traits, and thus variation in the strength of the plant-pollinator interaction might drive variation in the opportunity for selection and selection intensity across plant populations. Here, we examine whether these critical evolutionary parameters covary with pollination intensity across wild populations of the biennial Sabatia angularis. We quantified pollination intensity in each of nine S. angularis populations as mean stigmatic pollen load per population. For female fitness and three components, fruit number, fruit set (proportion of flowers setting fruit) and number of seeds per fruit, we evaluated whether the opportunity for selection varied with pollination intensity. We used phenotypic selection analyses to test for interactions between pollination intensity and selection gradients for five floral traits, including flowering phenology. The opportunity for selection via fruit set and seeds per fruit declined significantly with increasing pollen receipt, as expected. We demonstrated significant directional selection on multiple traits across populations. We also found that selection intensity for all traits depended on pollination intensity. Consistent with general theory about the relationship between biotic interaction strength and the intensity of selection, our study suggests that variation in pollination intensity drives variation in selection across S. angularis populations. © 2017 The Authors. New Phytologist © 2017 New Phytologist Trust.

Zoogeography of the shorefish fauna of Clipperton Atoll

Science.gov (United States)

Robertson, D. R.; Allen, G. R.

1996-06-01

One hundred and fifteen species of fishes (14 oceanic, plus 101 shore and nearshore species) are known from Clipperton Island, a small, remote coral atoll in the tropical eastern Pacific (TEP). This fish fauna includes only ˜ 14% of the region's shallow-water species, and also is depauperate relative to the fish faunas of other isolated tropical islands. The island's isolation, small size, reduced habitat diversity, and oceanic environment contribute to this paucity of species. Fifty-two species at Clipperton can be identified as TEP; these include 37 widespread species, six species shared only with the Revillagigedo Islands [the nearest (950 km) offshore shoals], and eight endemic to Clipperton. Endemics species apparently have a mix of west and east Pacific origins. Sixty-three species are transpacific; they include three new records (of Naso surgeonfishes) that maybe vagrants recruited > 4,000 km from Oceania. Clipperton is situated at the juncture between the TEP and Oceania. Its fish fauna contains about equal numbers of TEP and transpacific species. This faunal structure reflects the relative influence of surface currents from Oceania and the TEP. Although most of Clipperton's transpacific shorefishes are widespread in eastern Oceania, the Clipperton fauna has specific affinities to the fauna of the Line Islands, which are located within the main eastbound current from Oceania. Clipperton may therefore be a major stepping stone for dispersal between Oceania and the remainder of the TEP. About 50% of the non-oceanic, tropical transpacific fishes occur there, and at least 75 % of those species apparently have resident populations at the island.

Breeding common bean populations for traits using selection index

Directory of Open Access Journals (Sweden)

Dayane Cristina Lima

2015-02-01

Full Text Available A common bean (Phaseolus vulgarisL. cultivar must combine desirable genotypes for several traits in order to be accepted by producers and consumers. This study aimed to evaluate selection efficiency when segregating bean populations for traits, by means of a selection index, in order to obtain superior progenies for traits considered. A total of 16 populations from the F4 and F5generations were evaluated in 2011 and 2012, respectively. The traits evaluated were plant architecture, plant disease, grain type and yield. Using standard scores (Z, the sum of the four traits (∑Z was obtained and, based on this information, the best populations were identified. The evaluation of selection effectiveness was performed on 31 progenies from each population. The 496 progenies plus eight controls were evaluated in the F5:6and F5:7 generations for the same traits in July and November 2012, respectively. The selection, using the index based on the sum of standardized variables (∑Z, was efficient for identifying populations with superior progenies for all the traits considered.

Derivation of plant-soil relationships for dose assessment on Bikini Atoll

International Nuclear Information System (INIS)

Colsher, C.S.

1976-11-01

A radiological survey of the terrestrial environment of Bikini and Eneu Islands (Bikini Atoll) was conducted in June 1975 to evaluate the potential radiation dose to the returning Bikini population. This report presents measurements of the radionuclide concentration in soil profiles and in dominant species of edible and nonedible indicator plants and describes the use of these data to derive relationships to predict the plant uptake of radionuclides from soil. Soil-plant concentration factors together with leaf-leaf and fruit-leaf concentration ratios for indicator and edible plant species from the same area are calculated to quantitatively assess and compare the uptake of 90 Sr, 137 Cs, and 239 ' 240 Pu. In general, the concentration factors for 137 Cs in terrestrial vegetation are greater than those for 90 Sr and the concentration factors for both these nuclides exceed those for 239 ' 240 Pu by ten to one hundred-fold. Uptake of 90 Sr and 239 ' 240 Pu by fruit is less than that by mature leaves; however, the opposite is true for 137 Cs. The relative contribution of the individual plant species to the internal dose to man varies with the nuclide. The use of concentration factors and concentration ratios to predict nuclide concentrations in fruit from those in soil or leaves is prescribed

Impact of selective genotyping in the training population on accuracy and bias of genomic selection.

Science.gov (United States)

Zhao, Yusheng; Gowda, Manje; Longin, Friedrich H; Würschum, Tobias; Ranc, Nicolas; Reif, Jochen C

2012-08-01

Estimating marker effects based on routinely generated phenotypic data of breeding programs is a cost-effective strategy to implement genomic selection. Truncation selection in breeding populations, however, could have a strong impact on the accuracy to predict genomic breeding values. The main objective of our study was to investigate the influence of phenotypic selection on the accuracy and bias of genomic selection. We used experimental data of 788 testcross progenies from an elite maize breeding program. The testcross progenies were evaluated in unreplicated field trials in ten environments and fingerprinted with 857 SNP markers. Random regression best linear unbiased prediction method was used in combination with fivefold cross-validation based on genotypic sampling. We observed a substantial loss in the accuracy to predict genomic breeding values in unidirectional selected populations. In contrast, estimating marker effects based on bidirectional selected populations led to only a marginal decrease in the prediction accuracy of genomic breeding values. We concluded that bidirectional selection is a valuable approach to efficiently implement genomic selection in applied plant breeding programs.

Palmyra Atoll, 2006 Sea Surface Temperature and Meteorological Enhanced Mooring - CRED CREWS Near Real Time and Historical Data

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Site Palmyra Atoll, (5.88467, -162.10281 ) ARGOS ID 307-001. Time series data from this mooring provide high resolution sea surface temperature and conductivity, and...

Kin groups and trait groups: population structure and epidemic disease selection.

Science.gov (United States)

Fix, A G

1984-10-01

A Monte Carlo simulation based on the population structure of a small-scale human population, the Semai Senoi of Malaysia, has been developed to study the combined effects of group, kin, and individual selection. The population structure resembles D.S. Wilson's structured deme model in that local breeding populations (Semai settlements) are subdivided into trait groups (hamlets) that may be kin-structured and are not themselves demes. Additionally, settlement breeding populations are connected by two-dimensional stepping-stone migration approaching 30% per generation. Group and kin-structured group selection occur among hamlets the survivors of which then disperse to breed within the settlement population. Genetic drift is modeled by the process of hamlet formation; individual selection as a deterministic process, and stepping-stone migration as either random or kin-structured migrant groups. The mechanism for group selection is epidemics of infectious disease that can wipe out small hamlets particularly if most adults become sick and social life collapses. Genetic resistance to a disease is an individual attribute; however, hamlet groups with several resistant adults are less likely to disintegrate and experience high social mortality. A specific human gene, hemoglobin E, which confers resistance to malaria, is studied as an example of the process. The results of the simulations show that high genetic variance among hamlet groups may be generated by moderate degrees of kin-structuring. This strong microdifferentiation provides the potential for group selection. The effect of group selection in this case is rapid increase in gene frequencies among the total set of populations. In fact, group selection in concert with individual selection produced a faster rate of gene frequency increase among a set of 25 populations than the rate within a single unstructured population subject to deterministic individual selection. Such rapid evolution with plausible rates of

Radionuclide concentrations in underground waters of Mururoa and Fangataufa Atolls.

Science.gov (United States)

Mulsow, S; Coquery, M; Dovlete, C; Gastaud, J; Ikeuchi, Y; Pham, M K; Povinec, P P

1999-09-30

water (colloids included) these radionuclides were below detection limits, may be accounted for the conspicuous quantity of iron oxy-hydroxides present in the particulate fraction that under the appropriate redox conditions may be interacting selectively with elements in solution (scavenging) resulting in the enhanced transuranic signal. While transuranics have been found in places of their origin, radionuclides with low Kd values (3H, 90Sr, 137Cs) have already been transported to monitoring wells, as well as to the atolls' lagoons and the open ocean.

Dispersion of radionuclides potentially released from the Atolls of Mururoa and Fangataufa to neighboring archipelagos

International Nuclear Information System (INIS)

Osvath, I.

1999-01-01

This paper presents a compartmental model developed to simulate dispersion of radionuclides released to the ocean from the atolls of Mururoa and Fangataufa on a scale of 3000 x 1700 km (150 deg. to 300 deg. S latitude, 130 deg. to 160 deg. W longitude), including the Tuamotu, Cook, Society, Gambier and Austral archipelagos

Invisible Nuclear Catastrophe Consequences of the U.S. Atomic and Hydrogen Bomb Testings in the Marshall Islands: Focusing on the “Overlooked” Ailuk Atoll

OpenAIRE

Takemine, Seiichiro

2018-01-01

The United States conducted sixty-seven nuclear tests in total at Bikini and Enewetak Atoll in the Marshall Islands between 1946 and 1958. T his article discusses the U.S. nuclear test issues in the Marshall Islands, focusing on the local people who have not been able t o apply for the U.S. compensation, especially those on Ailuk Atoll. Until today, little attention has been given to these areas.Interviews with survivors as well as declassified U.S. documents make it clear that the nuclear te...

Genetic diversity of Wolbachia endosymbionts in Culex quinquefasciatus from Hawai`i, Midway Atoll, and Samoa

Science.gov (United States)

Atkinson, Carter T.; Watcher-Weatherwax, William; Lapointe, Dennis

2016-01-01

Incompatible insect techniques are potential methods for controlling Culex quinquefasciatus and avian disease transmission in Hawai‘i without the use of pesticides or genetically modified organisms. The approach is based on naturally occurring sperm-egg incompatibilities within the Culex pipiens complex that are controlled by different strains of the bacterial endosymbiont Wolbachia pipientis (wPip). Incompatibilities can be unidirectional (crosses between males infected with strain A and females infected with strain B are fertile, while reciprocal crosses are not) or bidirectional (reciprocal crosses between sexes with different wPip strains are infertile). The technique depends on release of sufficient numbers of male mosquitoes infected with an incompatible wPip strain to suppress mosquito populations and reduce transmission of introduced avian malaria (Plasmodium relictum) and Avipoxvirus in native forest bird habitats. Both diseases are difficult to manage using more traditional methods based on removal and treatment of larval habitats and coordination of multiple approaches may be needed to control this vector. We characterized the diversity of Wolbachia strains in C. quinquefasciatus from Hawai‘i, Kaua‘i, Midway Atoll, and American Samoa with a variety of genetic markers to identify compatibility groups and their distribution within and between islands. We confirmed the presence of wPip with multilocus sequence typing, tested for local genetic variability using 16 WO prophage genes, and identified similarities to strains from other parts of the world with a transposable element (tr1). We also tested for genetic differences in ankyrin motifs (ank2 and pk1) which have been used to classify wPip strains into five worldwide groups (wPip1–wPip5) that vary in compatibility with each other based on experimental crosses. We found a mixture of both widely distributed and site specific genotypes based on presence or absence of WO prophage and transposable

Projections of extreme water level events for atolls in the western Tropical Pacific

Science.gov (United States)

Merrifield, M. A.; Becker, J. M.; Ford, M.; Yao, Y.

2014-12-01

Conditions that lead to extreme water levels and coastal flooding are examined for atolls in the Republic of the Marshall Islands based on a recent field study of wave transformations over fringing reefs, tide gauge observations, and wave model hindcasts. Wave-driven water level extremes pose the largest threat to atoll shorelines, with coastal levels scaling as approximately one-third of the incident breaking wave height. The wave-driven coastal water level is partitioned into a mean setup, low frequency oscillations associated with cross-reef quasi-standing modes, and wind waves that reach the shore after undergoing high dissipation due to breaking and bottom friction. All three components depend on the water level over the reef; however, the sum of the components is independent of water level due to cancelling effects. Wave hindcasts suggest that wave-driven water level extremes capable of coastal flooding are infrequent events that require a peak wave event to coincide with mid- to high-tide conditions. Interannual and decadal variations in sea level do not change the frequency of these events appreciably. Future sea-level rise scenarios significantly increase the flooding threat associated with wave events, with a nearly exponential increase in flooding days per year as sea level exceeds 0.3 to 1.0 m above current levels.

Clipperton Atoll Core 2B Stable Isotope (delta 13C, delta 18O) Data for 1893 to 1994

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — 101 year stable isotope record from P. lobata, core 4B, Clipperton Atoll, eastern Pacific. Sampling at annual and 12/year resolution, files clipperton.4B.iso.txt and...

Clipperton Atoll Core 3C Stable Isotope (delta 13C, delta 18O) Data for 1893 to 1994

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — 101 year stable isotope record from P. lobata, core 4B, Clipperton Atoll, eastern Pacific. Sampling at annual and 12/year resolution, files clipperton.4B.iso.txt and...

Clipperton Atoll Core 4B Stable Isotope (delta 13C, delta 18O) Data for 1893 to 1994

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — 101 year stable isotope record from P. lobata, core 4B, Clipperton Atoll, eastern Pacific. Sampling at annual and 12/year resolution, files clipperton.4B.iso.txt and...

Effects of Land-Use Change and Managed Aquifer Recharge on Geochemical Reactions with Implications for Groundwater Quantity and Quality in Atoll Island Aquifers, Roi-Namur, Republic of the Marshall Islands

Science.gov (United States)

Hejazian, M.; Swarzenski, P. W.; Gurdak, J. J.; Odigie, K. O.; Storlazzi, C. D.

2015-12-01

This study compares the hydrogeochemistry of two contrasting atoll groundwater systems in Roi-Namur, Republic of the Marshall Islands. Roi-Namur houses a U.S. Department of Defense military installation and presents an ideal study location where a human impacted aquifer is co-located next to a natural aquifer as part of two artificially conjoined atoll islands. The hydrogeology and geochemistry of carbonate atoll aquifers has been well studied, particularly because of its small, well-defined hydrologic system that allows for relatively precise modeling. However, it is unknown how changes in land-use/land cover and managed aquifer recharge (MAR) alters natural geochemical processes in atoll aquifers. A better understanding of this has implications on groundwater quantity and quality, carbonate dissolution, and best aquifer management practices in the context of rising sea level and saltwater intrusion. Roi has been heavily modified to house military and civilian operations; here, lack of vegetation and managed recharge has increased the volume of potable groundwater and affected the geochemical processes in the freshwater lens and saltwater transition zone. Namur is heavily vegetated and the hydrogeology is indicative of a natural atoll island. A suite of monitoring wells were sampled across both island settings for major ions, nutrients, trace elements, DOC/DIC, δ13C and δ18O/2H isotopes. By modeling geochemical reactions using a conservative mixing approach, we measure deviations from expected reactions and compare the two contrasting settings using derived geochemical profiles through a wide salinity spectrum. Results indicate that groundwater on Namur is more heavily depleted in δ13C and has greater dissolved inorganic carbon, suggesting higher microbial oxidation and greater dissolution within the carbonate aquifer. This suggests MAR and reduction of vegetation makes the groundwater supply on atoll islands more resilient to sea level rise.

CRED 20m Gridded bathymetry and IKONOS estimated depths of Pearl and Hermes Atoll, Hawaii, USA (Arc ASCII format)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry and IKONOS estimated depths of the shelf and slope environments of Pearl and Hermes Atoll, Hawaii, USA. Bottom coverage was achieved in depths...

CRED 5 m Gridded bathymetry and IKONOS estimated depths of Pearl and Hermes Atoll, Hawaii, USA (Arc ASCII format)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry and IKONOS estimated depths of the shelf and slope environments of Pearl and Hermes Atoll, Hawaii, USA. Bottom coverage was achieved in depths...

CRED 20 m Gridded bathymetry and IKONOS estimated depths of Pearl and Hermes Atoll, Hawaii, USA (NetCDF format)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry and IKONOS estimated depths of the shelf and slope environments of Pearl and Hermes Atoll, Hawaii, USA. Bottom coverage was achieved in depths...

CRED 5 m Gridded bathymetry and IKONOS estimated depths of Pearl and Hermes Atoll, Hawaii, USA (NetCDF format)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Gridded bathymetry and IKONOS estimated depths of the shelf and slope environments of Pearl and Hermes Atoll, Hawaii, USA. Bottom coverage was achieved in depths...

The radiological situation at the atolls of Mururoa and Fangataufa. Technical report. V. 4. Releases to the biosphere of radionuclides from underground nuclear weapon tests at the atolls

International Nuclear Information System (INIS)

1998-08-01

This report is Volume 4 in the series of 6 volumes of the Technical Report on the radiological situation at the atolls of Mururoa and the Fangataufa. It is the second of the three volumes dealing with the evaluation of the long term radiological situation as a consequence of radionuclide migration from underground sources, which is the responsibility of Task Group B. This volume is based on the activities of Working Group 4 and uses, as its primary input on radionuclide inventories the report of Working Group 3, which is Vol. 3 in this series of Technical Report. Nuclear testing in the atmosphere, outer space and under open ocean was prohibited by the Limited Test Ban Treaty of 5 August 1963 and signed by UK, USA and USSR. France ceased atmospheric testing in September 1974. Isolation from the biosphere in geological formations, or containment in geological formations, became the preferred alternative. The explosion of 137 underground nuclear devices in Mururoa and Fangataufa over the testing period 1975-1996, together with 10 safety trials and the burial of radioactively contaminated material gathered from the atoll surfaces, has resulted in a substantial accumulation of radionuclides in the rock beneath the two atolls. Assessment of the rate at which these radionuclides move from the cavities to the environment accessible to humans, or biosphere and the total radionuclide release to the biosphere over time is the central effort of this Study. The rock mass within which the radionuclides are initially deposited, and which serves to contain or delay release of the radionuclides, will be referred to as the geosphere to distinguish it from the biosphere, where the radionuclides would be accessible either directly or through the food chain to the living environment. This assessment of geosphere transport has been divided into the following four interrelated tasks: (a) Geological Pathways; (b) Hydrological Modelling; (c) Solution Source Term; and (d) Geosphere

The genetic consequences of selection in natural populations.

Science.gov (United States)

Thurman, Timothy J; Barrett, Rowan D H

2016-04-01

The selection coefficient, s, quantifies the strength of selection acting on a genetic variant. Despite this parameter's central importance to population genetic models, until recently we have known relatively little about the value of s in natural populations. With the development of molecular genetic techniques in the late 20th century and the sequencing technologies that followed, biologists are now able to identify genetic variants and directly relate them to organismal fitness. We reviewed the literature for published estimates of natural selection acting at the genetic level and found over 3000 estimates of selection coefficients from 79 studies. Selection coefficients were roughly exponentially distributed, suggesting that the impact of selection at the genetic level is generally weak but can occasionally be quite strong. We used both nonparametric statistics and formal random-effects meta-analysis to determine how selection varies across biological and methodological categories. Selection was stronger when measured over shorter timescales, with the mean magnitude of s greatest for studies that measured selection within a single generation. Our analyses found conflicting trends when considering how selection varies with the genetic scale (e.g., SNPs or haplotypes) at which it is measured, suggesting a need for further research. Besides these quantitative conclusions, we highlight key issues in the calculation, interpretation, and reporting of selection coefficients and provide recommendations for future research. © 2016 John Wiley & Sons Ltd.

Behavior of plutonium isotopes in the marine environment of Enewetak atoll

International Nuclear Information System (INIS)

Noshkin, V.E.; Robison, W.L.; Eagle, R.J.

1998-01-01

There continue to be reports in the literature that suggest a difference in the behavior of 239+240 Pu and 238 Pu in some aquatic environments. Plutonium isotopes have been measured in marine samples collected over 3 decades form Enewetak atoll, one of the sites in the Marshall Islands used by the United States between 1946 and 1958 to test nuclear devices. The plutonium isotopes originated from a variety of complex sources and could possibly coexist in this environment as different physical-chemical species. However results indicate little difference in the mobility and biological availability of 239+240 Pu and 238 Pu. (author)

Predicting rates of inbreeding in populations undergoing selection

NARCIS (Netherlands)

Woolliams, J.A.; Bijma, P.

2000-01-01

Tractable forms of predicting rates of inbreeding (F) in selected populations with general indices, nonrandom mating, and overlapping generations were developed, with the principal results assuming a period of equilibrium in the selection process. An existing theorem concerning the relationship

Distribution and sediment production of large benthic foraminifers on reef flats of the Majuro Atoll, Marshall Islands

Science.gov (United States)

Fujita, K.; Osawa, Y.; Kayanne, H.; Ide, Y.; Yamano, H.

2009-03-01

The distributions and population densities of large benthic foraminifers (LBFs) were investigated on reef flats of the Majuro Atoll, Marshall Islands. Annual sediment production by foraminifers was estimated based on population density data. Predominant LBFs were Calcarina and Amphistegina, and the population densities of these foraminifers varied with location and substratum type on reef flats. Both foraminifers primarily attached to macrophytes, particularly turf-forming algae, and were most abundant on an ocean reef flat (ORF) and in an inter-island channel near windward, sparsely populated islands. Calcarina density was higher on windward compared to leeward sides of ORFs, whereas Amphistegina density was similar on both sides of ORFs. These foraminifers were more common on the ocean side relative to the lagoon side of reef flats around a windward reef island, and both were rare or absent in nearshore zones around reef islands and on an ORF near windward, densely populated islands. Foraminiferal production rates varied with the degree to which habitats were subject to water motion and human influences. Highly productive sites (>103 g CaCO3 m-2 year-1) included an ORF and an inter-island channel near windward, sparsely populated islands, and a seaward area of a reef flat with no reef islands. Low-productivity sites (<10 g CaCO3 m-2 year-1) included generally nearshore zones of lagoonal reef flats, leeward ORFs, and a windward ORF near densely populated islands. These results suggest that the distribution and production of LBFs were largely influenced by a combination of natural environmental factors, including water motion, water depth, elevation relative to the lowest tidal level at spring tide, and the distribution of suitable substratum. The presence of reef islands may limit the distribution and production of foraminifers by altering water circulation in nearshore environments. Furthermore, increased anthropogenic factors (population and activities) may

Training set optimization under population structure in genomic selection.

Science.gov (United States)

Isidro, Julio; Jannink, Jean-Luc; Akdemir, Deniz; Poland, Jesse; Heslot, Nicolas; Sorrells, Mark E

2015-01-01

Population structure must be evaluated before optimization of the training set population. Maximizing the phenotypic variance captured by the training set is important for optimal performance. The optimization of the training set (TRS) in genomic selection has received much interest in both animal and plant breeding, because it is critical to the accuracy of the prediction models. In this study, five different TRS sampling algorithms, stratified sampling, mean of the coefficient of determination (CDmean), mean of predictor error variance (PEVmean), stratified CDmean (StratCDmean) and random sampling, were evaluated for prediction accuracy in the presence of different levels of population structure. In the presence of population structure, the most phenotypic variation captured by a sampling method in the TRS is desirable. The wheat dataset showed mild population structure, and CDmean and stratified CDmean methods showed the highest accuracies for all the traits except for test weight and heading date. The rice dataset had strong population structure and the approach based on stratified sampling showed the highest accuracies for all traits. In general, CDmean minimized the relationship between genotypes in the TRS, maximizing the relationship between TRS and the test set. This makes it suitable as an optimization criterion for long-term selection. Our results indicated that the best selection criterion used to optimize the TRS seems to depend on the interaction of trait architecture and population structure.

Selection in a subdivided population with local extinction and recolonization.

Science.gov (United States)

Cherry, Joshua L

2003-01-01

In a subdivided population, local extinction and subsequent recolonization affect the fate of alleles. Of particular interest is the interaction of this force with natural selection. The effect of selection can be weakened by this additional source of stochastic change in allele frequency. The behavior of a selected allele in such a population is shown to be equivalent to that of an allele with a different selection coefficient in an unstructured population with a different size. This equivalence allows use of established results for panmictic populations to predict such quantities as fixation probabilities and mean times to fixation. The magnitude of the quantity N(e)s(e), which determines fixation probability, is decreased by extinction and recolonization. Thus deleterious alleles are more likely to fix, and advantageous alleles less likely to do so, in the presence of extinction and recolonization. Computer simulations confirm that the theoretical predictions of both fixation probabilities and mean times to fixation are good approximations. PMID:12807797

Radiochemical analysis of radio-nuclides in sea water collected near Bikini Atoll

Energy Technology Data Exchange (ETDEWEB)

Miyake, Y; Sugiura, Y

1955-01-01

A radiochemical analysis of sea water containing fission materials collected near Bikini Atoll in June, 1954, was performed. The sea water was boiled with hydrochloric acid, iron and lanthanum salts each 5 mg as Fe and La were added to it. They were precipitated as hydroxide, which was dissolved in hydrochloric acid and ferric chloride was extracted with ethyl ether. The remaining solution was evaporated to dryness and the residue was dissolved in hydrochloric acid. Using the latter solution the group separation was done with cation exchanger resins.

An assessment of non-communicable diseases, diabetes, and related risk factors in the Republic of the Marshall Islands, Majuro Atoll: a systems perspective.

Science.gov (United States)

Ichiho, Henry M; deBrum, Ione; Kedi, Shra; Langidrik, Justina; Aitaoto, Nia

2013-05-01

Non-communicable diseases (NCD) have been identified as a health emergency in the US-associated Pacific Islands (USAPI).1 This assessment, funded by the National Institutes of Health, was conducted in the Republic of the Marshall Islands, Majuro Atoll and describes the burdens due to selected NCD (diabetes, heart disease, hypertension, stroke, chronic kidney disease); and assesses the system of service capacity and current activities for service delivery, data collection and reporting as well as identifying the issues that need to be addressed. Findings reveal that the risk factors of poor diet, lack of physical activity, and risky lifestyle behaviors are associated with overweight and obesity and subsequent NCD that are significant factors in the morbidity and mortality of the population. The leading causes of death include sepsis, cancer, diabetes-related deaths, pneumonia, and hypertension. Population-based survey for the RMI show that 62.5% of the adults are overweight or obese and the prevalence of diabetes stands at 19.6%. Other findings show significant gaps in the system of administrative, clinical, data, and support services to address these NCD. There is no policy and procedure manual for the hospital or public health diabetes clinics and there is little communication, coordination, or collaboration between the medical and public health staff. There is no functional data system that allows for the identification, registry, or tracking of patients with diabetes or other NCDs. Based on these findings, priority issues and problems to be addressed for the administrative, clinical, and data systems were identified.

Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding.

Science.gov (United States)

Grenier, Cécile; Cao, Tuong-Vi; Ospina, Yolima; Quintero, Constanza; Châtel, Marc Henri; Tohme, Joe; Courtois, Brigitte; Ahmadi, Nourollah

2015-01-01

Genomic selection (GS) is a promising strategy for enhancing genetic gain. We investigated the accuracy of genomic estimated breeding values (GEBV) in four inter-related synthetic populations that underwent several cycles of recurrent selection in an upland rice-breeding program. A total of 343 S2:4 lines extracted from those populations were phenotyped for flowering time, plant height, grain yield and panicle weight, and genotyped with an average density of one marker per 44.8 kb. The relative effect of the linkage disequilibrium (LD) and minor allele frequency (MAF) thresholds for selecting markers, the relative size of the training population (TP) and of the validation population (VP), the selected trait and the genomic prediction models (frequentist and Bayesian) on the accuracy of GEBVs was investigated in 540 cross validation experiments with 100 replicates. The effect of kinship between the training and validation populations was tested in an additional set of 840 cross validation experiments with a single genomic prediction model. LD was high (average r2 = 0.59 at 25 kb) and decreased slowly, distribution of allele frequencies at individual loci was markedly skewed toward unbalanced frequencies (MAF average value 15.2% and median 9.6%), and differentiation between the four synthetic populations was low (FST ≤0.06). The accuracy of GEBV across all cross validation experiments ranged from 0.12 to 0.54 with an average of 0.30. Significant differences in accuracy were observed among the different levels of each factor investigated. Phenotypic traits had the biggest effect, and the size of the incidence matrix had the smallest. Significant first degree interaction was observed for GEBV accuracy between traits and all the other factors studied, and between prediction models and LD, MAF and composition of the TP. The potential of GS to accelerate genetic gain and breeding options to increase the accuracy of predictions are discussed.

Selection dramatically reduces effective population size in HIV-1 infection

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Mittler John E

2008-05-01

Full Text Available Abstract Background In HIV-1 evolution, a 100–100,000 fold discrepancy between census size and effective population size (Ne has been noted. Although it is well known that selection can reduce Ne, high in vivo mutation and recombination rates complicate attempts to quantify the effects of selection on HIV-1 effective size. Results We use the inbreeding coefficient and the variance in allele frequency at a linked neutral locus to estimate the reduction in Ne due to selection in the presence of mutation and recombination. With biologically realistic mutation rates, the reduction in Ne due to selection is determined by the strength of selection, i.e., the stronger the selection, the greater the reduction. However, the dependence of Ne on selection can break down if recombination rates are very high (e.g., r ≥ 0.1. With biologically likely recombination rates, our model suggests that recurrent selective sweeps similar to those observed in vivo can reduce within-host HIV-1 effective population sizes by a factor of 300 or more. Conclusion Although other factors, such as unequal viral reproduction rates and limited migration between tissue compartments contribute to reductions in Ne, our model suggests that recurrent selection plays a significant role in reducing HIV-1 effective population sizes in vivo.

Lineage dynamics and mutation-selection balance in non-adapting asexual populations

Science.gov (United States)

Pénisson, Sophie; Sniegowski, Paul D.; Colato, Alexandre; Gerrish, Philip J.

2013-02-01

In classical population genetics, mutation-selection balance refers to the equilibrium frequency of a deleterious allele established and maintained under two opposing forces: recurrent mutation, which tends to increase the frequency of the allele; and selection, which tends to decrease its frequency. In a haploid population, if μ denotes the per capita rate of production of the deleterious allele by mutation and s denotes the selective disadvantage of carrying the allele, then the classical mutation-selection balance frequency of the allele is approximated by μ/s. This calculation assumes that lineages carrying the mutant allele in question—the ‘focal allele’—do not accumulate deleterious mutations linked to the focal allele. In principle, indirect selection against the focal allele caused by such additional mutations can decrease the frequency of the focal allele below the classical mutation-selection balance. This effect of indirect selection will be strongest in an asexual population, in which the entire genome is in linkage. Here, we use an approach based on a multitype branching process to investigate this effect, analyzing lineage dynamics under mutation, direct selection, and indirect selection in a non-adapting asexual population. We find that the equilibrium balance between recurrent mutation to the focal allele and the forces of direct and indirect selection against the focal allele is closely approximated by γμ/(s + U) (s = 0 if the focal allele is neutral), where γ ≈ eθθ-(ω+θ)(ω + θ)(Γ(ω + θ) - Γ(ω + θ,θ)), \\theta =U/\\tilde {s}, and \\omega =s/\\tilde {s}; U denotes the genomic deleterious mutation rate and \\tilde {s} denotes the geometric mean selective disadvantage of deleterious mutations elsewhere on the genome. This mutation-selection balance for asexual populations can remain surprisingly invariant over wide ranges of the mutation rate.

Isoenzymatic variability in tropical maize populations under reciprocal recurrent selection

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Pinto Luciana Rossini

2003-01-01

Full Text Available Maize (Zea mays L. is one of the crops in which the genetic variability has been extensively studied at isoenzymatic loci. The genetic variability of the maize populations BR-105 and BR-106, and the synthetics IG-3 and IG-4, obtained after one cycle of a high-intensity reciprocal recurrent selection (RRS, was investigated at seven isoenzymatic loci. A total of twenty alleles were identified, and most of the private alleles were found in the BR-106 population. One cycle of reciprocal recurrent selection (RRS caused reductions of 12% in the number of alleles in both populations. Changes in allele frequencies were also observed between populations and synthetics, mainly for the Est 2 locus. Populations presented similar values for the number of alleles per locus, percentage of polymorphic loci, and observed and expected heterozygosities. A decrease of the genetic variation values was observed for the synthetics as a consequence of genetic drift effects and reduction of the effective population sizes. The distribution of the genetic diversity within and between populations revealed that most of the diversity was maintained within them, i.e. BR-105 x BR-106 (G ST = 3.5% and IG-3 x IG-4 (G ST = 4.0%. The genetic distances between populations and synthetics increased approximately 21%. An increase in the genetic divergence between the populations occurred without limiting new selection procedures.

Bikini Atoll Rehabilitation Committee Report no. 4 Status March 31, 1986. Submitted to the U.S. Congress, House and Senate Committees on Interior Appropriations, pursuant to House Report 99-450, Department of Interior Account no. TT-1580X08, Washington, DC

Energy Technology Data Exchange (ETDEWEB)

NONE

1986-07-01

The principal findings of Report No. 4, Bikini Atoll Rehabilitation Committee (March 31, 1986) are as follows: (1) On the basis of the Federal protective action guide (ionizing radiation) and an Environmental Assessment, Eneu may be resettled now. The calculation of the planning dose for the estimation of radiation risk is given in detail. (2) Three principal methods for decontamination control are being studied in field trials at Bikini Atoll -- removal of top soil, treatment with potassium salt, and irrigation with sea water. The latter two, still in an early experimental stage, give promise of being cheaper and ecologically superior to excavation, but the details and limits of their practical application remain to be established. (3) The important socio-economic factors that affect resettlement planning for the Bikinians are reviewed. Prominent among them is a population growth rate of 5% per annum. Sketch plans to serve as models for the resettlement community are discussed. (author)

Bikini Atoll Rehabilitation Committee Report no. 4 Status March 31, 1986. Submitted to the U.S. Congress, House and Senate Committees on Interior Appropriations, pursuant to House Report 99-450, Department of Interior Account no. TT-1580X08, Washington, DC

International Nuclear Information System (INIS)

1986-01-01

The principal findings of Report No. 4, Bikini Atoll Rehabilitation Committee (March 31, 1986) are as follows: (1) On the basis of the Federal protective action guide (ionizing radiation) and an Environmental Assessment, Eneu may be resettled now. The calculation of the planning dose for the estimation of radiation risk is given in detail. (2) Three principal methods for decontamination control are being studied in field trials at Bikini Atoll -- removal of top soil, treatment with potassium salt, and irrigation with sea water. The latter two, still in an early experimental stage, give promise of being cheaper and ecologically superior to excavation, but the details and limits of their practical application remain to be established. (3) The important socio-economic factors that affect resettlement planning for the Bikinians are reviewed. Prominent among them is a population growth rate of 5% per annum. Sketch plans to serve as models for the resettlement community are discussed. (author)

Distribution, sources and risk assessment of polychlorinated biphenyls in soils from the Midway Atoll, North Pacific Ocean.

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Jing Ge

Full Text Available Concentrations of 28 polychlorinated biphenyls (PCBs were assessed in soils from the Midway Atoll in the central North Pacific Ocean. The analytical procedure involved the application of accelerated solvent extraction (ASE and gas chromatography coupled with ion trap mass spectrometric detection (GC/ITMS for identification and quantification. Among the 28 PCB congeners studied, 26 of them, except CB195 and CB209, were detected in the analyzed samples at different frequencies. The total concentrations of 28 indicator PCBs (ΣPCBs ranged from 2.6 to 148.8 ng g⁻¹ with an average value of 50.7 ng g⁻¹ and median of 39.5 ng g⁻¹. Sources and congeners' pattern of PCB were investigated in the soil of Midway Atoll. The principal component analysis indicated that the compositions of PCBs in most of the soil samples were similar. The total concentrations of PCBs were used to assess the cancer risk probabilities in humans via ingestion, dermal contact and inhalation of soil particles. Very low cancer risk was found in all soil samples caused by ΣPCBs.

1996 Inventory of Endangered Species and Wildlife Resources on US Army Kwajalein Atoll, Republic of the Marshall Islands (NODC Accession 0000251)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This report summarizes the results of the first United States Army Kwajalein Atoll (USAKA) Activities in the Republic of the Marshall Islands (UES) inventory of...

Quantifying selection in evolving populations using time-resolved genetic data

Science.gov (United States)

Illingworth, Christopher J. R.; Mustonen, Ville

2013-01-01

Methods which uncover the molecular basis of the adaptive evolution of a population address some important biological questions. For example, the problem of identifying genetic variants which underlie drug resistance, a question of importance for the treatment of pathogens, and of cancer, can be understood as a matter of inferring selection. One difficulty in the inference of variants under positive selection is the potential complexity of the underlying evolutionary dynamics, which may involve an interplay between several contributing processes, including mutation, recombination and genetic drift. A source of progress may be found in modern sequencing technologies, which confer an increasing ability to gather information about evolving populations, granting a window into these complex processes. One particularly interesting development is the ability to follow evolution as it happens, by whole-genome sequencing of an evolving population at multiple time points. We here discuss how to use time-resolved sequence data to draw inferences about the evolutionary dynamics of a population under study. We begin by reviewing our earlier analysis of a yeast selection experiment, in which we used a deterministic evolutionary framework to identify alleles under selection for heat tolerance, and to quantify the selection acting upon them. Considering further the use of advanced intercross lines to measure selection, we here extend this framework to cover scenarios of simultaneous recombination and selection, and of two driver alleles with multiple linked neutral, or passenger, alleles, where the driver pair evolves under an epistatic fitness landscape. We conclude by discussing the limitations of the approach presented and outlining future challenges for such methodologies.

Accuracy of Genomic Selection in a Rice Synthetic Population Developed for Recurrent Selection Breeding.

Directory of Open Access Journals (Sweden)

Cécile Grenier

Full Text Available Genomic selection (GS is a promising strategy for enhancing genetic gain. We investigated the accuracy of genomic estimated breeding values (GEBV in four inter-related synthetic populations that underwent several cycles of recurrent selection in an upland rice-breeding program. A total of 343 S2:4 lines extracted from those populations were phenotyped for flowering time, plant height, grain yield and panicle weight, and genotyped with an average density of one marker per 44.8 kb. The relative effect of the linkage disequilibrium (LD and minor allele frequency (MAF thresholds for selecting markers, the relative size of the training population (TP and of the validation population (VP, the selected trait and the genomic prediction models (frequentist and Bayesian on the accuracy of GEBVs was investigated in 540 cross validation experiments with 100 replicates. The effect of kinship between the training and validation populations was tested in an additional set of 840 cross validation experiments with a single genomic prediction model. LD was high (average r2 = 0.59 at 25 kb and decreased slowly, distribution of allele frequencies at individual loci was markedly skewed toward unbalanced frequencies (MAF average value 15.2% and median 9.6%, and differentiation between the four synthetic populations was low (FST ≤0.06. The accuracy of GEBV across all cross validation experiments ranged from 0.12 to 0.54 with an average of 0.30. Significant differences in accuracy were observed among the different levels of each factor investigated. Phenotypic traits had the biggest effect, and the size of the incidence matrix had the smallest. Significant first degree interaction was observed for GEBV accuracy between traits and all the other factors studied, and between prediction models and LD, MAF and composition of the TP. The potential of GS to accelerate genetic gain and breeding options to increase the accuracy of predictions are discussed.

Selective Pressures Explain Differences in Flower Color among Gentiana lutea Populations.

Science.gov (United States)

Sobral, Mar; Veiga, Tania; Domínguez, Paula; Guitián, Javier A; Guitián, Pablo; Guitián, José M

2015-01-01

Flower color variation among plant populations might reflect adaptation to local conditions such as the interacting animal community. In the northwest Iberian Peninsula, flower color of Gentiana lutea varies longitudinally among populations, ranging from orange to yellow. We explored whether flower color is locally adapted and the role of pollinators and seed predators as agents of selection by analyzing the influence of flower color on (i) pollinator visitation rate and (ii) escape from seed predation and (iii) by testing whether differences in pollinator communities correlate with flower color variation across populations. Finally, (iv) we investigated whether variation in selective pressures explains flower color variation among 12 G. lutea populations. Flower color influenced pollinator visits and differences in flower color among populations were related to variation in pollinator communities. Selective pressures on flower color vary among populations and explain part of flower color differences among populations of G. lutea. We conclude that flower color in G. lutea is locally adapted and that pollinators play a role in this adaptation.

Selective Pressures Explain Differences in Flower Color among Gentiana lutea Populations.

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Mar Sobral

Full Text Available Flower color variation among plant populations might reflect adaptation to local conditions such as the interacting animal community. In the northwest Iberian Peninsula, flower color of Gentiana lutea varies longitudinally among populations, ranging from orange to yellow. We explored whether flower color is locally adapted and the role of pollinators and seed predators as agents of selection by analyzing the influence of flower color on (i pollinator visitation rate and (ii escape from seed predation and (iii by testing whether differences in pollinator communities correlate with flower color variation across populations. Finally, (iv we investigated whether variation in selective pressures explains flower color variation among 12 G. lutea populations. Flower color influenced pollinator visits and differences in flower color among populations were related to variation in pollinator communities. Selective pressures on flower color vary among populations and explain part of flower color differences among populations of G. lutea. We conclude that flower color in G. lutea is locally adapted and that pollinators play a role in this adaptation.

Parallel selection on TRPV6 in human populations

OpenAIRE

Hughes, David A; Tang, Kun; Strotmann, Rainer; Schöneberg, Torsten; Prenen, Jean; Nilius, Bernd; Stoneking, Mark

2008-01-01

We identified and examined a candidate gene for local directional selection in Europeans, TRPV6, and conclude that selection has acted on standing genetic variation at this locus, creating parallel soft sweep events in humans. A novel modification of the extended haplotype homozygosity (EHH) test was utilized, which compares EHH for a single allele across populations, to investigate the signature of selection at TRPV6 and neighboring linked loci in published data sets for Europeans, Asians an...

Directional selection effects on patterns of phenotypic (co)variation in wild populations.

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Assis, A P A; Patton, J L; Hubbe, A; Marroig, G

2016-11-30

Phenotypic (co)variation is a prerequisite for evolutionary change, and understanding how (co)variation evolves is of crucial importance to the biological sciences. Theoretical models predict that under directional selection, phenotypic (co)variation should evolve in step with the underlying adaptive landscape, increasing the degree of correlation among co-selected traits as well as the amount of genetic variance in the direction of selection. Whether either of these outcomes occurs in natural populations is an open question and thus an important gap in evolutionary theory. Here, we documented changes in the phenotypic (co)variation structure in two separate natural populations in each of two chipmunk species (Tamias alpinus and T. speciosus) undergoing directional selection. In populations where selection was strongest (those of T. alpinus), we observed changes, at least for one population, in phenotypic (co)variation that matched theoretical expectations, namely an increase of both phenotypic integration and (co)variance in the direction of selection and a re-alignment of the major axis of variation with the selection gradient. © 2016 The Author(s).

Environmental change disrupts communication and sexual selection in a stickleback population.

Science.gov (United States)

Candolin, Ulrika; Tukiainen, Iina; Bertell, Elina

2016-04-01

Environmental change that disrupts communication during mate choice and alters sexual selection could influence population dynamics. Yet little is known about such long-term effects. We investigated experimentally the consequences that disrupted visual communication during mate choice has for the quantity and viability of offspring produced in a threespine stickleback population (Gasterosteus aculeatus). We further related the results to long-term monitoring of population dynamics in the field to determine if changes are apparent under natural conditions. The results show that impaired visual communication because of algal blooms reduces reliability of male visual signals as indicators of offspring survival during their first weeks of life. This relaxes sexual selection but has no effect on the number of offspring hatching, as most males have a high hatching success in turbid water. Despite eutrophication and high turbidity levels that interfere with communication during mate choice, the population has grown during recent decades. Large numbers of offspring hatching, combined with high variation in juvenile fitness, has probably shifted selection to later life history stages and maintained a viable population. Together with reduced cost of sexual selection and ongoing ecosystem changes caused by human activities, this could have promoted population growth. These results point to the complexity of ecosystems and the necessity to consider all influencing factors when attempting to understand impacts of human activities on populations.

Ancestral informative marker selection and population structure visualization using sparse Laplacian eigenfunctions.

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Jun Zhang

Full Text Available Identification of a small panel of population structure informative markers can reduce genotyping cost and is useful in various applications, such as ancestry inference in association mapping, forensics and evolutionary theory in population genetics. Traditional methods to ascertain ancestral informative markers usually require the prior knowledge of individual ancestry and have difficulty for admixed populations. Recently Principal Components Analysis (PCA has been employed with success to select SNPs which are highly correlated with top significant principal components (PCs without use of individual ancestral information. The approach is also applicable to admixed populations. Here we propose a novel approach based on our recent result on summarizing population structure by graph laplacian eigenfunctions, which differs from PCA in that it is geometric and robust to outliers. Our approach also takes advantage of the priori sparseness of informative markers in the genome. Through simulation of a ring population and the real global population sample HGDP of 650K SNPs genotyped in 940 unrelated individuals, we validate the proposed algorithm at selecting most informative markers, a small fraction of which can recover the similar underlying population structure efficiently. Employing a standard Support Vector Machine (SVM to predict individuals' continental memberships on HGDP dataset of seven continents, we demonstrate that the selected SNPs by our method are more informative but less redundant than those selected by PCA. Our algorithm is a promising tool in genome-wide association studies and population genetics, facilitating the selection of structure informative markers, efficient detection of population substructure and ancestral inference.

Natural selection and infectious disease in human populations

Science.gov (United States)

Karlsson, Elinor K.; Kwiatkowski, Dominic P.; Sabeti, Pardis C.

2015-01-01

The ancient biological 'arms race' between microbial pathogens and humans has shaped genetic variation in modern populations, and this has important implications for the growing field of medical genomics. As humans migrated throughout the world, populations encountered distinct pathogens, and natural selection increased the prevalence of alleles that are advantageous in the new ecosystems in both host and pathogens. This ancient history now influences human infectious disease susceptibility and microbiome homeostasis, and contributes to common diseases that show geographical disparities, such as autoimmune and metabolic disorders. Using new high-throughput technologies, analytical methods and expanding public data resources, the investigation of natural selection is leading to new insights into the function and dysfunction of human biology. PMID:24776769

24 CFR 960.407 - Selection preference for mixed population developments.

Science.gov (United States)

2010-04-01

... population developments. 960.407 Section 960.407 Housing and Urban Development Regulations Relating to... Elderly Families and Disabled Families in Mixed Population Projects § 960.407 Selection preference for mixed population developments. (a) The PHA must give preference to elderly families and disabled...

Rapid Cycling Genomic Selection in a Multiparental Tropical Maize Population.

Science.gov (United States)

Zhang, Xuecai; Pérez-Rodríguez, Paulino; Burgueño, Juan; Olsen, Michael; Buckler, Edward; Atlin, Gary; Prasanna, Boddupalli M; Vargas, Mateo; San Vicente, Félix; Crossa, José

2017-07-05

Genomic selection (GS) increases genetic gain by reducing the length of the selection cycle, as has been exemplified in maize using rapid cycling recombination of biparental populations. However, no results of GS applied to maize multi-parental populations have been reported so far. This study is the first to show realized genetic gains of rapid cycling genomic selection (RCGS) for four recombination cycles in a multi-parental tropical maize population. Eighteen elite tropical maize lines were intercrossed twice, and self-pollinated once, to form the cycle 0 (C 0 ) training population. A total of 1000 ear-to-row C 0 families was genotyped with 955,690 genotyping-by-sequencing SNP markers; their testcrosses were phenotyped at four optimal locations in Mexico to form the training population. Individuals from families with the best plant types, maturity, and grain yield were selected and intermated to form RCGS cycle 1 (C 1 ). Predictions of the genotyped individuals forming cycle C 1 were made, and the best predicted grain yielders were selected as parents of C 2 ; this was repeated for more cycles (C 2 , C 3 , and C 4 ), thereby achieving two cycles per year. Multi-environment trials of individuals from populations C 0, C 1 , C 2 , C 3 , and C 4 , together with four benchmark checks were evaluated at two locations in Mexico. Results indicated that realized grain yield from C 1 to C 4 reached 0.225 ton ha -1 per cycle, which is equivalent to 0.100 ton ha -1  yr -1 over a 4.5-yr breeding period from the initial cross to the last cycle. Compared with the original 18 parents used to form cycle 0 (C 0 ), genetic diversity narrowed only slightly during the last GS cycles (C 3 and C 4 ). Results indicate that, in tropical maize multi-parental breeding populations, RCGS can be an effective breeding strategy for simultaneously conserving genetic diversity and achieving high genetic gains in a short period of time. Copyright © 2017 Zhang et al.

Investigation of the marine communities of Midway Harbor and adjacent lagoon, Midway Atoll, Northwest Hawaiian Islands in 1998 (NODC Accession 0001098)

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National Oceanic and Atmospheric Administration, Department of Commerce — A survey of the marine communities of Midway Atoll harbor and surrounding lagoon was conducted at 12 sites from September 5 to 9, 1998. The primary focus of these...

Selfing for the design of genomic selection experiments in biparental plant populations.

Science.gov (United States)

McClosky, Benjamin; LaCombe, Jason; Tanksley, Steven D

2013-11-01

Self-fertilization (selfing) is commonly used for population development in plant breeding, and it is well established that selfing increases genetic variance between lines, thus increasing response to phenotypic selection. Furthermore, numerous studies have explored how selfing can be deployed to maximal benefit in the context of traditional plant breeding programs (Cornish in Heredity 65:201-211,1990a, Heredity 65:213-220,1990b; Liu et al. in Theor Appl Genet 109:370-376, 2004; Pooni and Jinks in Heredity 54:255-260, 1985). However, the impact of selfing on response to genomic selection has not been explored. In the current study we examined how selfing impacts the two key aspects of genomic selection-GEBV prediction (training) and selection response. We reach the following conclusions: (1) On average, selfing increases genomic selection gains by more than 70 %. (2) The gains in genomic selection response attributable to selfing hold over a wide range population sizes (100-500), heritabilities (0.2-0.8), and selection intensities (0.01-0.1). However, the benefits of selfing are dramatically reduced as the number of QTLs drops below 20. (3) The major cause of the improved response to genomic selection with selfing is through an increase in the occurrence of superior genotypes and not through improved GEBV predictions. While performance of the training population improves with selfing (especially with low heritability and small population sizes), the magnitude of these improvements is relatively small compared with improvements observed in the selection population. To illustrate the value of these insights, we propose a practical genomic selection scheme that substantially shortens the number of generations required to fully capture the benefits of selfing. Specifically, we provide simulation evidence that indicates the proposed scheme matches or exceeds the selection gains observed in advanced populations (i.e. F 8 and doubled haploid) across a broad range of

1998 Inventory of Endangered Species and Wildlife Resources at the US Army Kwajalein Atoll, Republic of the Marshall Islands (NODC Accession 0000631)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — This report summarizes the results of the second United States Army Kwajalein Atoll (USAKA) Activities in the Republic of the Marshall Islands (UES) inventory of...

Population genetic data of the NGM SElect STR loci in Chinese Han population from Zhejiang region, China.

Science.gov (United States)

Zhou, Anju; Wu, Weiwei; Liu, Qiuling; Wu, Yeda; Lu, Dejian

2013-03-01

Genetic variations of the 17 NGM SElect STR loci in Chinese Han samples from the Zhejiang region were analyzed. The results show that the NGM SElect is a highly genetic informative system in Zhejiang Han, and this population shows quite different genetic data from other major populations in the world with the exception of the Fujian Han.

A dose assessment for a U.S. nuclear test site -- Bikini Atoll

International Nuclear Information System (INIS)

Robison, W.L.; Bogen, K.T.; Conrado, C.L.

1993-07-01

On March 1, 1954, a nuclear weapon test, code-named BRAVO, conducted at Bikini Atoll in the northern Marshall Islands contaminated the major residence island. Here the authors provide a radiological dose assessment for the main residence island, Bikini, using extensive radionuclide concentration data derived from analysis of food crops, ground water, cistern water, fish and other marine species, animals, air, and soil collected at Bikini Island. The unique composition of coral soil greatly alters the relative contribution of cesium-137 and strontium-90 to the total estimated dose relative to expectations based on North American and European soils. Cesium-137 produces 96% of the estimated dose for returning residents, mostly through uptake from the soil to terrestrial food crops but also from external gamma exposure. The estimated maximum annual effective dose is 4.4 mSv y -1 when imported foods, which are now an established part of the diet, are available. The 30-, 50-, and 70-y integral effective doses are 10 cSv, 14 cSv, and 16 cSv, respectively. An analysis of interindividual variability in 0- to 30-y expected integral dose indicates that 95% of Bikini residents would have expected doses within a factor of 3.4 above and 4.8 below the population-average value. A corresponding uncertainty analysis showed that after about 5 y of residence, the 95% confidence limits on population-average dose would be ±35% of its expected value. The authors have evaluated various countermeasures to reduce 137 Cs in food crops. Treatment with potassium reduces the uptake of 137 Cs into food crops, and therefore the ingestion dose, to less than 10% of pretreatment levels and has essentially no negative environmental consequences

CRED Reson 8101 multibeam backscatter data of Palmyra Atoll, Pacific Remote Island Areas, Central Pacific with 1 meter resolution in netCDF format

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Multibeam backscatter imagery extracted from gridded bathymetry of the lagoon, shelf, and slope environments of Palmyra Atoll, Pacific Island Areas, Central Pacific....

Opportunity for natural selection among five population groups of Manipur, North East India.

Science.gov (United States)

Asghar, M; Meitei, S Y; Luxmi, Y; Achoubi, N; Meitei, K S; Murry, B; Sachdeva, M P; Saraswathy, K N

2014-01-01

Opportunity for natural selection among five population groups of Manipur in comparison with other North East Indian population has been studied. Crow's index as well as Johnston and Kensinger's index for natural selection were calculated based on differential fertility and mortality. The mortality component was found to be lower compared to fertility component in all the populations which may attribute to comparatively improved and easily accessible health care facilities. However, different selection pressures, artificial and natural, seem to be influencing the selection intensity through induced abortion and spontaneous abortion among the two non-tribal migrant groups: Bamon and Muslims, respectively. This study highlights the probable interaction of artificial and natural selection in determining the evolutionary fate of any population group.

Inventory of endangered species and wildlife resources at the US Army Kwajalein Atoll, Republic of the Marshall Islands, 1988 (NODC Accession 0000631)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — An inventory of endangered species and the wildlife resources at the US Army Kwajelein Atoll, Republic of the Marshall Island were conducted from 30 October 1998 to...

Past and present levels of some radionuclides in fish from Bikini and Enewetak Atolls.

Science.gov (United States)

Noshkin, V E; Robison, W L; Wong, K M; Brunk, J L; Eagle, R J; Jones, H E

1997-07-01

Bikini and Enewetak were the sites in the Northern Marshall Islands that were used by the United States as testing grounds for nuclear devices between 1946 and 1958. The testing produced close-in fallout debris that was contaminated with different radionuclides and which entered the aquatic environment. The contaminated lagoon sediments became a reservoir and source term of manmade radionuclides for the resident marine organisms. This report contains a summary of all the available data on the concentrations of 137Cs, 60Co and 207Bi in flesh samples of reef and pelagic fish collected from Bikini and Enewetak Atolls between 1964 and 1995. The selection of these three radionuclides for discussion is based on the fact that these are the only radionuclides that have been routinely detected by gamma spectrometry in flesh samples from all fish for the last 20 y. Flesh from fish is an important source of food in the Marshallese diet. These radionuclides along with the transuranic radionuclides and 90Sr contribute most of the small radiological dose from ingesting marine foods. Some basic relationships among concentrations in different tissues and organs are discussed. The reef fish can be used as indicator species because their body burden is derived from feeding, over a lifetime, within a relatively small contaminated area of the lagoon. Therefore, the emphasis of this report is to use this extensive and unique concentration data base to describe the effective half lives and cycling for the radionuclides in the marine environments during the 31-y period between 1964 and 1995. The results from an analysis of the radionuclide concentrations in the flesh samples indicate the removal rates for the 3 radionuclides are significantly different. 137Cs is removed from the lagoons with an effective half life of 9-12 y. Little 60Co is mobilized to the water column so that it is depleted in both environments, primarily through radioactive decay. The properties of 207Bi are different

Population structure, genetic variation and linkage disequilibrium in perennial ryegrass populations divergently selected for freezing tolerance

Directory of Open Access Journals (Sweden)

Mallikarjuna Rao eKovi

2015-11-01

Full Text Available Low temperature is one of the abiotic stresses seriously affecting the growth of perennial ryegrass (Lolium perenne L. Understanding the genetic control of freezing tolerance would aid in the development of cultivars of perennial ryegrass with improved adaptation to frost. A total number of 80 individuals (24 of High frost [HF]; 29 of Low frost [LF] and 27 of Unselected [US] from the second generation of the two divergently selected populations and an unselected control population were genotyped using 278 genome-wide SNPs derived from Lolium perenne L. transcriptome sequence. Our studies showed that the HF and LF populations are very divergent after selection for freezing tolerance, whereas the HF and US populations are more similar. Linkage disequilibrium (LD decay varied across the seven chromosomes and the conspicuous pattern of LD between the HF and LF population confirmed their divergence in freezing tolerance. Furthermore, two Fst outlier methods; finite island model (fdist by LOSITAN and hierarchical structure model using ARLEQUIN detected six loci under directional selection. These outlier loci are most probably linked to genes involved in freezing tolerance, cold adaptation and abiotic stress and might be the potential marker resources for breeding perennial ryegrass cultivars with improved freezing tolerance.

Population genetics inference for longitudinally-sampled mutants under strong selection.

Science.gov (United States)

Lacerda, Miguel; Seoighe, Cathal

2014-11-01

Longitudinal allele frequency data are becoming increasingly prevalent. Such samples permit statistical inference of the population genetics parameters that influence the fate of mutant variants. To infer these parameters by maximum likelihood, the mutant frequency is often assumed to evolve according to the Wright-Fisher model. For computational reasons, this discrete model is commonly approximated by a diffusion process that requires the assumption that the forces of natural selection and mutation are weak. This assumption is not always appropriate. For example, mutations that impart drug resistance in pathogens may evolve under strong selective pressure. Here, we present an alternative approximation to the mutant-frequency distribution that does not make any assumptions about the magnitude of selection or mutation and is much more computationally efficient than the standard diffusion approximation. Simulation studies are used to compare the performance of our method to that of the Wright-Fisher and Gaussian diffusion approximations. For large populations, our method is found to provide a much better approximation to the mutant-frequency distribution when selection is strong, while all three methods perform comparably when selection is weak. Importantly, maximum-likelihood estimates of the selection coefficient are severely attenuated when selection is strong under the two diffusion models, but not when our method is used. This is further demonstrated with an application to mutant-frequency data from an experimental study of bacteriophage evolution. We therefore recommend our method for estimating the selection coefficient when the effective population size is too large to utilize the discrete Wright-Fisher model. Copyright © 2014 by the Genetics Society of America.

Genome-wide detection and characterization of positive selection in human populations.

Science.gov (United States)

Sabeti, Pardis C; Varilly, Patrick; Fry, Ben; Lohmueller, Jason; Hostetter, Elizabeth; Cotsapas, Chris; Xie, Xiaohui; Byrne, Elizabeth H; McCarroll, Steven A; Gaudet, Rachelle; Schaffner, Stephen F; Lander, Eric S; Frazer, Kelly A; Ballinger, Dennis G; Cox, David R; Hinds, David A; Stuve, Laura L; Gibbs, Richard A; Belmont, John W; Boudreau, Andrew; Hardenbol, Paul; Leal, Suzanne M; Pasternak, Shiran; Wheeler, David A; Willis, Thomas D; Yu, Fuli; Yang, Huanming; Zeng, Changqing; Gao, Yang; Hu, Haoran; Hu, Weitao; Li, Chaohua; Lin, Wei; Liu, Siqi; Pan, Hao; Tang, Xiaoli; Wang, Jian; Wang, Wei; Yu, Jun; Zhang, Bo; Zhang, Qingrun; Zhao, Hongbin; Zhao, Hui; Zhou, Jun; Gabriel, Stacey B; Barry, Rachel; Blumenstiel, Brendan; Camargo, Amy; Defelice, Matthew; Faggart, Maura; Goyette, Mary; Gupta, Supriya; Moore, Jamie; Nguyen, Huy; Onofrio, Robert C; Parkin, Melissa; Roy, Jessica; Stahl, Erich; Winchester, Ellen; Ziaugra, Liuda; Altshuler, David; Shen, Yan; Yao, Zhijian; Huang, Wei; Chu, Xun; He, Yungang; Jin, Li; Liu, Yangfan; Shen, Yayun; Sun, Weiwei; Wang, Haifeng; Wang, Yi; Wang, Ying; Xiong, Xiaoyan; Xu, Liang; Waye, Mary M Y; Tsui, Stephen K W; Xue, Hong; Wong, J Tze-Fei; Galver, Luana M; Fan, Jian-Bing; Gunderson, Kevin; Murray, Sarah S; Oliphant, Arnold R; Chee, Mark S; Montpetit, Alexandre; Chagnon, Fanny; Ferretti, Vincent; Leboeuf, Martin; Olivier, Jean-François; Phillips, Michael S; Roumy, Stéphanie; Sallée, Clémentine; Verner, Andrei; Hudson, Thomas J; Kwok, Pui-Yan; Cai, Dongmei; Koboldt, Daniel C; Miller, Raymond D; Pawlikowska, Ludmila; Taillon-Miller, Patricia; Xiao, Ming; Tsui, Lap-Chee; Mak, William; Song, You Qiang; Tam, Paul K H; Nakamura, Yusuke; Kawaguchi, Takahisa; Kitamoto, Takuya; Morizono, Takashi; Nagashima, Atsushi; Ohnishi, Yozo; Sekine, Akihiro; Tanaka, Toshihiro; Tsunoda, Tatsuhiko; Deloukas, Panos; Bird, Christine P; Delgado, Marcos; Dermitzakis, Emmanouil T; Gwilliam, Rhian; Hunt, Sarah; Morrison, Jonathan; Powell, Don; Stranger, Barbara E; Whittaker, Pamela; Bentley, David R; Daly, Mark J; de Bakker, Paul I W; Barrett, Jeff; Chretien, Yves R; Maller, Julian; McCarroll, Steve; Patterson, Nick; Pe'er, Itsik; Price, Alkes; Purcell, Shaun; Richter, Daniel J; Sabeti, Pardis; Saxena, Richa; Schaffner, Stephen F; Sham, Pak C; Varilly, Patrick; Altshuler, David; Stein, Lincoln D; Krishnan, Lalitha; Smith, Albert Vernon; Tello-Ruiz, Marcela K; Thorisson, Gudmundur A; Chakravarti, Aravinda; Chen, Peter E; Cutler, David J; Kashuk, Carl S; Lin, Shin; Abecasis, Gonçalo R; Guan, Weihua; Li, Yun; Munro, Heather M; Qin, Zhaohui Steve; Thomas, Daryl J; McVean, Gilean; Auton, Adam; Bottolo, Leonardo; Cardin, Niall; Eyheramendy, Susana; Freeman, Colin; Marchini, Jonathan; Myers, Simon; Spencer, Chris; Stephens, Matthew; Donnelly, Peter; Cardon, Lon R; Clarke, Geraldine; Evans, David M; Morris, Andrew P; Weir, Bruce S; Tsunoda, Tatsuhiko; Johnson, Todd A; Mullikin, James C; Sherry, Stephen T; Feolo, Michael; Skol, Andrew; Zhang, Houcan; Zeng, Changqing; Zhao, Hui; Matsuda, Ichiro; Fukushima, Yoshimitsu; Macer, Darryl R; Suda, Eiko; Rotimi, Charles N; Adebamowo, Clement A; Ajayi, Ike; Aniagwu, Toyin; Marshall, Patricia A; Nkwodimmah, Chibuzor; Royal, Charmaine D M; Leppert, Mark F; Dixon, Missy; Peiffer, Andy; Qiu, Renzong; Kent, Alastair; Kato, Kazuto; Niikawa, Norio; Adewole, Isaac F; Knoppers, Bartha M; Foster, Morris W; Clayton, Ellen Wright; Watkin, Jessica; Gibbs, Richard A; Belmont, John W; Muzny, Donna; Nazareth, Lynne; Sodergren, Erica; Weinstock, George M; Wheeler, David A; Yakub, Imtaz; Gabriel, Stacey B; Onofrio, Robert C; Richter, Daniel J; Ziaugra, Liuda; Birren, Bruce W; Daly, Mark J; Altshuler, David; Wilson, Richard K; Fulton, Lucinda L; Rogers, Jane; Burton, John; Carter, Nigel P; Clee, Christopher M; Griffiths, Mark; Jones, Matthew C; McLay, Kirsten; Plumb, Robert W; Ross, Mark T; Sims, Sarah K; Willey, David L; Chen, Zhu; Han, Hua; Kang, Le; Godbout, Martin; Wallenburg, John C; L'Archevêque, Paul; Bellemare, Guy; Saeki, Koji; Wang, Hongguang; An, Daochang; Fu, Hongbo; Li, Qing; Wang, Zhen; Wang, Renwu; Holden, Arthur L; Brooks, Lisa D; McEwen, Jean E; Guyer, Mark S; Wang, Vivian Ota; Peterson, Jane L; Shi, Michael; Spiegel, Jack; Sung, Lawrence M; Zacharia, Lynn F; Collins, Francis S; Kennedy, Karen; Jamieson, Ruth; Stewart, John

2007-10-18

With the advent of dense maps of human genetic variation, it is now possible to detect positive natural selection across the human genome. Here we report an analysis of over 3 million polymorphisms from the International HapMap Project Phase 2 (HapMap2). We used 'long-range haplotype' methods, which were developed to identify alleles segregating in a population that have undergone recent selection, and we also developed new methods that are based on cross-population comparisons to discover alleles that have swept to near-fixation within a population. The analysis reveals more than 300 strong candidate regions. Focusing on the strongest 22 regions, we develop a heuristic for scrutinizing these regions to identify candidate targets of selection. In a complementary analysis, we identify 26 non-synonymous, coding, single nucleotide polymorphisms showing regional evidence of positive selection. Examination of these candidates highlights three cases in which two genes in a common biological process have apparently undergone positive selection in the same population:LARGE and DMD, both related to infection by the Lassa virus, in West Africa;SLC24A5 and SLC45A2, both involved in skin pigmentation, in Europe; and EDAR and EDA2R, both involved in development of hair follicles, in Asia.

Host tolerance, not symbiont tolerance, determines the distribution of coral species in relation to their environment at a Central Pacific atoll

Science.gov (United States)

Wicks, L. C.; Gardner, J. P. A.; Davy, S. K.

2012-06-01

Tolerance of environmental variables differs between corals and their dinoflagellate symbionts ( Symbiodinium spp.), controlling the holobiont's (host and symbiont combined) resilience to environmental stress. However, the ecological role that environmental variables play in holobiont distribution remains poorly understood. We compared the drivers of symbiont and coral species distributions at Palmyra Atoll, a location with a range of reef environments from low to high sediment concentrations (1-52 g dry weight m-2 day-1). We observed uniform holobiont partnerships across the atoll (e.g. Montipora spp. with Symbiodinium type C15 at all sites). Multivariate analysis revealed that field-based estimates of settling sediment predominantly explained the spatial variation of coral species among sites ( P coral rather than Symbiodinium physiology. The data highlight the importance of host tolerance to environmental stressors, which should be considered simultaneously with symbiont sensitivity when considering the impact of variations in environmental conditions on coral communities.

Population structure and strong divergent selection shape phenotypic diversification in maize landraces.

Science.gov (United States)

Pressoir, G; Berthaud, J

2004-02-01

To conserve the long-term selection potential of maize, it is necessary to investigate past and present evolutionary processes that have shaped quantitative trait variation. Understanding the dynamics of quantitative trait evolution is crucial to future crop breeding. We characterized population differentiation of maize landraces from the State of Oaxaca, Mexico for quantitative traits and molecular markers. Qst values were much higher than Fst values obtained for molecular markers. While low values of Fst (0.011 within-village and 0.003 among-villages) suggest that considerable gene flow occurred among the studied populations, high levels of population differentiation for quantitative traits were observed (ie an among-village Qst value of 0.535 for kernel weight). Our results suggest that although quantitative traits appear to be under strong divergent selection, a considerable amount of gene flow occurs among populations. Furthermore, we characterized nonproportional changes in the G matrix structure both within and among villages that are consequences of farmer selection. As a consequence of these differences in the G matrix structure, the response to multivariate selection will be different from one population to another. Large changes in the G matrix structure could indicate that farmers select for genes of major and pleiotropic effect. Farmers' decision and selection strategies have a great impact on phenotypic diversification in maize landraces.

Selection and adaptation in irradiated plant and animal populations: a review

International Nuclear Information System (INIS)

Hart, D.R.

1981-03-01

Available literature on the effects of ionizing radiation on mutation rates, variability and adaptive responses to selection in exposed plant and animal populations is reviewed. Accumulated variability, and hence potential selection differentials, may be increased by many times due to induced mutation. The radiation dose that maximizes induced mutation varies greatly among species, strains and genetic systems. Induced variability tends to enhance the respose to selection, but this effect may be delayed or prevented by an initial reduction in the heritability of induced variation. Significantly, the detrimental effects of harmful mutations in irradiated populations may exceed the beneficial effects of selection for adaptive characteristics. Selection for radioresistance may occur at lethal or sub-lethal radiation doses but dose relationships are highly variable. (author)

Mapping elemental contamination on Palmyra Atoll National Wildlife Refuge

Science.gov (United States)

Struckhoff, Matthew A.; Orazio, Carl E.; Tillitt, Donald E.; Shaver, David K.; Papoulias, Diana M.

2018-01-01

Palmyra Atoll, once a WWII U.S. Navy air station, is now a U.S. National Wildlife Refuge with nearly 50 km2 of coral reef and 275 ha of emergent lands with forests of Pisonia grandistrees and colonies of several bird species. Due to the known elemental and organic contamination from chemicals associated with aviation, power generation and transmission, waste management, and other air station activities, a screening survey to map elemental concentrations was conducted. A map of 1944 Navy facilities was georeferenced and identifiable features were digitized. These data informed a targeted survey of 25 elements in soils and sediment at locations known or suspected to be contaminated, using a hand-held X-ray fluorescence spectrometer. At dozens of locations, concentrations of elements exceeded established soil and marine sediment thresholds for adverse ecological effects. Results were compiled into a publically available geospatial dataset to inform potential remediation and habitat restoration activities.

Uncertainty analysis for an updated dose assessment for a US nuclear test site: Bikini Atoll

International Nuclear Information System (INIS)

Bogen, K.T.; Conrado, C.L.; Robison, W.L.

1995-11-01

A detailed analysis of uncertainty and interindividual variability in estimated doses was conducted for a rehabilitation scenario for Bikini Island at Bikini Atoll, in which the top 40 cm of soil would be removed in the housing and village area, and the rest of the island is treated with potassium fertilizer, prior to an assumed resettlement date of 1999. Predicted doses were considered for the following fallout-related exposure pathways: ingested Cesium-137 and Strontium-90, external gamma exposure, and inhalation and ingestion of Americium-241 + Plutonium-239+240. Two dietary scenarios were considered: (1) imported foods are available (IA), and (2) imported foods are unavailable (only local foods are consumed) (IUA). Corresponding calculations of uncertainty in estimated population-average dose showed that after ∼5 y of residence on Bikini, the upper and lower 95% confidence limits with respect to uncertainty in this dose are estimated to be approximately 2-fold higher and lower than its population-average value, respectively (under both IA and IUA assumptions). Corresponding calculations of interindividual variability in the expected value of dose with respect to uncertainty showed that after ∼5 y of residence on Bikini, the upper and lower 95% confidence limits with respect to interindividual variability in this dose are estimated to be approximately 2-fold higher and lower than its expected value, respectively (under both IA and IUA assumptions). For reference, the expected values of population-average dose at age 70 were estimated to be 1.6 and 5.2 cSv under the IA and IUA dietary assumptions, respectively. Assuming that 200 Bikini resettlers would be exposed to local foods (under both IA and IUA assumptions), the maximum 1-y dose received by any Bikini resident is most likely to be approximately 2 and 8 mSv under the IA and IUA assumptions, respectively

Strong selection during the last millennium for African ancestry in the admixed population of Madagascar.

Science.gov (United States)

Pierron, Denis; Heiske, Margit; Razafindrazaka, Harilanto; Pereda-Loth, Veronica; Sanchez, Jazmin; Alva, Omar; Arachiche, Amal; Boland, Anne; Olaso, Robert; Deleuze, Jean-Francois; Ricaut, Francois-Xavier; Rakotoarisoa, Jean-Aimé; Radimilahy, Chantal; Stoneking, Mark; Letellier, Thierry

2018-03-02

While admixed populations offer a unique opportunity to detect selection, the admixture in most of the studied populations occurred too recently to produce conclusive signals. By contrast, Malagasy populations originate from admixture between Asian and African populations that occurred ~27 generations ago, providing power to detect selection. We analyze local ancestry across the genomes of 700 Malagasy and identify a strong signal of recent positive selection, with an estimated selection coefficient >0.2. The selection is for African ancestry and affects 25% of chromosome 1, including the Duffy blood group gene. The null allele at this gene provides resistance to Plasmodium vivax malaria, and previous studies have suggested positive selection for this allele in the Malagasy population. This selection event also influences numerous other genes implicated in immunity, cardiovascular diseases, and asthma and decreases the Asian ancestry genome-wide by 10%, illustrating the role played by selection in recent human history.

Spectral evolution of the Atoll source 4U 1728-34 with RXTE and INTEGRAL: evidence for hard X-ray tail

NARCIS (Netherlands)

Tarana, A.; Belloni, T.; Bazzano, A.; Homan, J.; Méndez, M.; Ubertini, P.; Comastri, A.; Angelini, L.; Cappi, M.

We report the temporal and spectral results on the INTEGRAL and RXTE 2006-2007 observation campaign of the Atoll source 4U 1728-34 (GX 354-0). The source shows, more than once, spectral evolution as revealed by the hardness intensity diagram. The soft state is well described by a Comptonization with

Accuracy of genomic selection for alfalfa biomass yield in different reference populations.

Science.gov (United States)

Annicchiarico, Paolo; Nazzicari, Nelson; Li, Xuehui; Wei, Yanling; Pecetti, Luciano; Brummer, E Charles

2015-12-01

Genomic selection based on genotyping-by-sequencing (GBS) data could accelerate alfalfa yield gains, if it displayed moderate ability to predict parent breeding values. Its interest would be enhanced by predicting ability also for germplasm/reference populations other than those for which it was defined. Predicting accuracy may be influenced by statistical models, SNP calling procedures and missing data imputation strategies. Landrace and variety material from two genetically-contrasting reference populations, i.e., 124 elite genotypes adapted to the Po Valley (sub-continental climate; PV population) and 154 genotypes adapted to Mediterranean-climate environments (Me population), were genotyped by GBS and phenotyped in separate environments for dry matter yield of their dense-planted half-sib progenies. Both populations showed no sub-population genetic structure. Predictive accuracy was higher by joint rather than separate SNP calling for the two data sets, and using random forest imputation of missing data. Highest accuracy was obtained using Support Vector Regression (SVR) for PV, and Ridge Regression BLUP and SVR for Me germplasm. Bayesian methods (Bayes A, Bayes B and Bayesian Lasso) tended to be less accurate. Random Forest Regression was the least accurate model. Accuracy attained about 0.35 for Me in the range of 0.30-0.50 missing data, and 0.32 for PV at 0.50 missing data, using at least 10,000 SNP markers. Cross-population predictions based on a smaller subset of common SNPs implied a relative loss of accuracy of about 25% for Me and 30% for PV. Genome-wide association analyses based on large subsets of M. truncatula-aligned markers revealed many SNPs with modest association with yield, and some genome areas hosting putative QTLs. A comparison of genomic vs. conventional selection for parent breeding value assuming 1-year vs. 5-year selection cycles, respectively, indicated over three-fold greater predicted yield gain per unit time for genomic selection

Estimation of the ancestral effective population sizes of African great apes under different selection regimes.

Science.gov (United States)

Schrago, Carlos G

2014-08-01

Reliable estimates of ancestral effective population sizes are necessary to unveil the population-level phenomena that shaped the phylogeny and molecular evolution of the African great apes. Although several methods have previously been applied to infer ancestral effective population sizes, an analysis of the influence of the selective regime on the estimates of ancestral demography has not been thoroughly conducted. In this study, three independent data sets under different selective regimes were used were composed to tackle this issue. The results showed that selection had a significant impact on the estimates of ancestral effective population sizes of the African great apes. The inference of the ancestral demography of African great apes was affected by the selection regime. The effects, however, were not homogeneous along the ancestral populations of great apes. The effective population size of the ancestor of humans and chimpanzees was more impacted by the selection regime when compared to the same parameter in the ancestor of humans, chimpanzees and gorillas. Because the selection regime influenced the estimates of ancestral effective population size, it is reasonable to assume that a portion of the discrepancy found in previous studies that inferred the ancestral effective population size may be attributable to the differential action of selection on the genes sampled.

Footprints of directional selection in wild Atlantic salmon populations: evidence for parasite-driven evolution?

Science.gov (United States)

Zueva, Ksenia J; Lumme, Jaakko; Veselov, Alexey E; Kent, Matthew P; Lien, Sigbjørn; Primmer, Craig R

2014-01-01

Mechanisms of host-parasite co-adaptation have long been of interest in evolutionary biology; however, determining the genetic basis of parasite resistance has been challenging. Current advances in genome technologies provide new opportunities for obtaining a genome-scale view of the action of parasite-driven natural selection in wild populations and thus facilitate the search for specific genomic regions underlying inter-population differences in pathogen response. European populations of Atlantic salmon (Salmo salar L.) exhibit natural variance in susceptibility levels to the ectoparasite Gyrodactylus salaris Malmberg 1957, ranging from resistance to extreme susceptibility, and are therefore a good model for studying the evolution of virulence and resistance. However, distinguishing the molecular signatures of genetic drift and environment-associated selection in small populations such as land-locked Atlantic salmon populations presents a challenge, specifically in the search for pathogen-driven selection. We used a novel genome-scan analysis approach that enabled us to i) identify signals of selection in salmon populations affected by varying levels of genetic drift and ii) separate potentially selected loci into the categories of pathogen (G. salaris)-driven selection and selection acting upon other environmental characteristics. A total of 4631 single nucleotide polymorphisms (SNPs) were screened in Atlantic salmon from 12 different northern European populations. We identified three genomic regions potentially affected by parasite-driven selection, as well as three regions presumably affected by salinity-driven directional selection. Functional annotation of candidate SNPs is consistent with the role of the detected genomic regions in immune defence and, implicitly, in osmoregulation. These results provide new insights into the genetic basis of pathogen susceptibility in Atlantic salmon and will enable future searches for the specific genes involved.

Weights, hematology and serum chemistry of free-ranging brown boobies (Sula leucogaster) in Johnston Atoll, Central Pacific

Science.gov (United States)

Work, Thierry M.

1999-01-01

Hematologic and serum chemistry values are reported for 105 brown boobies (Sula leucogaster) from Johnston Atoll, Central Pacific. Hematocrit, estimated total plasma solids, total and differential white cell counts, serum glucose, calcium, phosphorus, uric acid, total protein, albumin, globulin, aspartate aminotransferase, and creatinine phosphokinase were analyzed. Hematologic and serum chemistry values varied with age and sex. Values were compared with those of red-footed boobies and other tropical and temperate marine pelecaniforms.

Selection from parasites favours immunogenetic diversity but not divergence among locally adapted host populations.

Science.gov (United States)

Tobler, M; Plath, M; Riesch, R; Schlupp, I; Grasse, A; Munimanda, G K; Setzer, C; Penn, D J; Moodley, Y

2014-05-01

The unprecedented polymorphism in the major histocompatibility complex (MHC) genes is thought to be maintained by balancing selection from parasites. However, do parasites also drive divergence at MHC loci between host populations, or do the effects of balancing selection maintain similarities among populations? We examined MHC variation in populations of the livebearing fish Poecilia mexicana and characterized their parasite communities. Poecilia mexicana populations in the Cueva del Azufre system are locally adapted to darkness and the presence of toxic hydrogen sulphide, representing highly divergent ecotypes or incipient species. Parasite communities differed significantly across populations, and populations with higher parasite loads had higher levels of diversity at class II MHC genes. However, despite different parasite communities, marked divergence in adaptive traits and in neutral genetic markers, we found MHC alleles to be remarkably similar among host populations. Our findings indicate that balancing selection from parasites maintains immunogenetic diversity of hosts, but this process does not promote MHC divergence in this system. On the contrary, we suggest that balancing selection on immunogenetic loci may outweigh divergent selection causing divergence, thereby hindering host divergence and speciation. Our findings support the hypothesis that balancing selection maintains MHC similarities among lineages during and after speciation (trans-species evolution). © 2014 The Authors. Journal of Evolutionary Biology © 2014 European Society For Evolutionary Biology.

Accuracy of genomic selection in European maize elite breeding populations.

Science.gov (United States)

Zhao, Yusheng; Gowda, Manje; Liu, Wenxin; Würschum, Tobias; Maurer, Hans P; Longin, Friedrich H; Ranc, Nicolas; Reif, Jochen C

2012-03-01

Genomic selection is a promising breeding strategy for rapid improvement of complex traits. The objective of our study was to investigate the prediction accuracy of genomic breeding values through cross validation. The study was based on experimental data of six segregating populations from a half-diallel mating design with 788 testcross progenies from an elite maize breeding program. The plants were intensively phenotyped in multi-location field trials and fingerprinted with 960 SNP markers. We used random regression best linear unbiased prediction in combination with fivefold cross validation. The prediction accuracy across populations was higher for grain moisture (0.90) than for grain yield (0.58). The accuracy of genomic selection realized for grain yield corresponds to the precision of phenotyping at unreplicated field trials in 3-4 locations. As for maize up to three generations are feasible per year, selection gain per unit time is high and, consequently, genomic selection holds great promise for maize breeding programs.

Frequency distribution, isotopic composition and physical characterization of plutonium-bearing particles from the Fig-Quince zone on Runit Island, Enewetak Atoll

DEFF Research Database (Denmark)

Hamilton, Terry F.; Jernström, Jussi; Martinelli, Roger E.

2009-01-01

Runit Island on Enewetak Atoll was very heavily impacted by the U.S. nuclear testing campaign in the northern Marshall Islands (1946–58). The primary source of contamination on Runit Island was the 1958 Quince safety test where a large quantity of device plutonium (Pu) was scattered over the area...

A general population genetic framework for antagonistic selection that accounts for demography and recurrent mutation.

Science.gov (United States)

Connallon, Tim; Clark, Andrew G

2012-04-01

Antagonistic selection--where alleles at a locus have opposing effects on male and female fitness ("sexual antagonism") or between components of fitness ("antagonistic pleiotropy")--might play an important role in maintaining population genetic variation and in driving phylogenetic and genomic patterns of sexual dimorphism and life-history evolution. While prior theory has thoroughly characterized the conditions necessary for antagonistic balancing selection to operate, we currently know little about the evolutionary interactions between antagonistic selection, recurrent mutation, and genetic drift, which should collectively shape empirical patterns of genetic variation. To fill this void, we developed and analyzed a series of population genetic models that simultaneously incorporate these processes. Our models identify two general properties of antagonistically selected loci. First, antagonistic selection inflates heterozygosity and fitness variance across a broad parameter range--a result that applies to alleles maintained by balancing selection and by recurrent mutation. Second, effective population size and genetic drift profoundly affect the statistical frequency distributions of antagonistically selected alleles. The "efficacy" of antagonistic selection (i.e., its tendency to dominate over genetic drift) is extremely weak relative to classical models, such as directional selection and overdominance. Alleles meeting traditional criteria for strong selection (N(e)s > 1, where N(e) is the effective population size, and s is a selection coefficient for a given sex or fitness component) may nevertheless evolve as if neutral. The effects of mutation and demography may generate population differences in overall levels of antagonistic fitness variation, as well as molecular population genetic signatures of balancing selection.

Concentrations of radionuclides in fish collected from Bikini Atoll between 1977 and 1984

International Nuclear Information System (INIS)

Noshkin, V.E.; Wong, K.M.; Eagle, R.J.; Jokela, T.A.; Brunk, J.A.

1986-07-01

This report summarizes all available data on the concentrations of radionuclides in fish from Bikini Atoll between 1977 and 1984. As found in other global studies, 137 Cs is most highly accumulated in edible flesh of all species of fish, the lowest fractions are found in the bone or liver. The mean concentration of 137 Cs in muscle of reef fish from the southern part of the atoll is comparable to the global fallout concentration measured in market samples of fish collected from Chicago, Illinois, in 1982. 90 Sr is generally associated with non-edible parts of fish, such as bone or viscera. Twenty-five to fifty percent of the total body burden of 60 Co is accumulated in the muscle tissue; the remainder is distributed among the liver, skin, and viscera. The mean concentration of 60 Co in fish has been decreasing at a rate faster than radiological decay alone. Most striking is the range of 207 Bi concentrations among different species of fish collected at the same time and place. Highest concentrations of 207 Bi were consistently detected in the muscle (and other tissues) of goatfish and some of the pelagic lagoon fish. In other reef fish, such as mullet, surgeonfish, and parrotfish, 207 Bi was usually below detection limits by gamma spectrometry. Over 70% of the whole-body activity of 207 Bi in goatfish is associated with the muscle tissue, whereas less than 5% is found in the muscle of mullet and surgeonfish. Neither 239+240 Pu nor 241 Am is significantly accumulated in the muscle tissue of any species of fish. Apparently, 238 Pu is in a more readily available form for accumulation by fishes than 239+240 Pu. Based on a daily ingestion rate of 200 q of fish flesh, dose rates to individuals through the fish-food ingestion pathway are well below current Federal guidelines

Phenotypic selection on flowering phenology and pollination efficiency traits between Primula populations with different pollinator assemblages.

Science.gov (United States)

Wu, Yun; Li, Qing-Jun

2017-10-01

Floral traits have largely been attributed to phenotypic selection in plant-pollinator interactions. However, the strength of this link has rarely been ascertained with real pollinators. We conducted pollinator observations and estimated selection through female fitness on flowering phenology and floral traits between two Primula secundiflora populations. We quantified pollinator-mediated selection by subtracting estimates of selection gradients of plants receiving supplemental hand pollination from those of plants receiving open pollination. There was net directional selection for an earlier flowering start date at populations where the dominant pollinators were syrphid flies, and flowering phenology was also subjected to stabilized quadratic selection. However, a later flowering start date was significantly selected at populations where the dominant pollinators were legitimate (normal pollination through the corolla tube entrance) and illegitimate bumblebees (abnormal pollination through nectar robbing hole which located at the corolla tube), and flowering phenology was subjected to disruptive quadratic selection. Wider corolla tube entrance diameter was selected at both populations. Furthermore, the strength of net directional selection on flowering start date and corolla tube entrance diameter was stronger at the population where the dominant pollinators were syrphid flies. Pollinator-mediated selection explained most of the between-population variations in the net directional selection on flowering phenology and corolla tube entrance diameter. Our results suggested the important influence of pollinator-mediated selection on floral evolution. Variations in pollinator assemblages not only resulted in variation in the direction of selection but also the strength of selection on floral traits.

Population structure, migration, and diversifying selection in the Netherlands

Science.gov (United States)

Abdellaoui, Abdel; Hottenga, Jouke-Jan; Knijff, Peter de; Nivard, Michel G; Xiao, Xiangjun; Scheet, Paul; Brooks, Andrew; Ehli, Erik A; Hu, Yueshan; Davies, Gareth E; Hudziak, James J; Sullivan, Patrick F; van Beijsterveldt, Toos; Willemsen, Gonneke; de Geus, Eco J; Penninx, Brenda W J H; Boomsma, Dorret I

2013-01-01

Genetic variation in a population can be summarized through principal component analysis (PCA) on genome-wide data. PCs derived from such analyses are valuable for genetic association studies, where they can correct for population stratification. We investigated how to capture the genetic population structure in a well-characterized sample from the Netherlands and in a worldwide data set and examined whether (1) removing long-range linkage disequilibrium (LD) regions and LD-based SNP pruning significantly improves correlations between PCs and geography and (2) whether genetic differentiation may have been influenced by migration and/or selection. In the Netherlands, three PCs showed significant correlations with geography, distinguishing between: (1) North and South; (2) East and West; and (3) the middle-band and the rest of the country. The third PC only emerged with minimized LD, which also significantly increased correlations with geography for the other two PCs. In addition to geography, the Dutch North–South PC showed correlations with genome-wide homozygosity (r=0.245), which may reflect a serial-founder effect due to northwards migration, and also with height (♂: r=0.142, ♀: r=0.153). The divergence between subpopulations identified by PCs is partly driven by selection pressures. The first three PCs showed significant signals for diversifying selection (545 SNPs - the majority within 184 genes). The strongest signal was observed between North and South for the functional SNP in HERC2 that determines human blue/brown eye color. Thus, this study demonstrates how to increase ancestry signals in a relatively homogeneous population and how those signals can reveal evolutionary history. PMID:23531865

Some statistical aspects of the cleanup of Enewetak Atoll

International Nuclear Information System (INIS)

Barnes, M.G.; Giacomini, J.J.; Friesen, H.N.

1979-01-01

Cleaning up the radionuclide contamination at Enewetak Atoll has involved a number of statistical design problems. Theoretical considerations led to choosing a grid sampling pattern; practical problems sometimes lead to resampling on a finer grid. Other problems associated with using grids have been both physical and statistical. The standard sampling system is an in situ intrinsic gamma detector which measures americium concentration. The cleanup guidelines include plutonium concentration, so additional sampling of soil is required to establish Pu/Am ratios. The soil sampling design included both guidelines for location of the samples and also a special pattern of subsamples making up composite samples. The large variance of the soil, sample results makes comparison between the two types difficult anyway, but this is compounded by vegetation attenuation of the in situ readings, soil disturbance influences, and differences in devegetation methods. The constraints inherent in doing what amounts to a research and development project, on a limited budget of time and money, in a field engineering environment are also considered

Highly selective population of two excited states in nonresonant two-photon absorption

International Nuclear Information System (INIS)

Zhang Hui; Zhang Shi-An; Sun Zhen-Rong

2011-01-01

A nonresonant two-photon absorption process can be manipulated by tailoring the ultra-short laser pulse. In this paper, we theoretically demonstrate a highly selective population of two excited states in the nonresonant two-photon absorption process by rationally designing a spectral phase distribution. Our results show that one excited state is maximally populated while the other state population is widely tunable from zero to the maximum value. We believe that the theoretical results may play an important role in the selective population of a more complex nonlinear process comprising nonresonant two-photon absorption, such as resonance-mediated (2+1)-three-photon absorption and (2+1)-resonant multiphoton ionization. (atomic and molecular physics)

Identifying footprints of selection in stocked brown trout populations: a spatio-temporal approach

DEFF Research Database (Denmark)

Hansen, Michael Møller; Meier, Kristian; Mensberg, Karen-Lise Dons

2010-01-01

Studies of interactions between farmed and wild salmonid fishes have suggested reduced fitness of farmed strains in the wild, but evidence for selection at the genic level is lacking. We studied three brown trout populations in Denmark which have been significantly admixed with stocked hatchery...... trout (19–64%), along with two hatchery strains used for stocking. The wild populations were represented by contemporary samples (2000–2006) and two of them by historical samples (1943–1956). We analysed 61 microsatellite loci, nine of which showed putative functional relationships [expressed sequence...... trout. In the most strongly admixed population, however, there was no evidence for selection, possibly because of immigration by stocked trout overcoming selection against hatchery-derived alleles or supportive breeding practices allowing hatchery strain trout to escape natural selection. To our...

Using variable combination population analysis for variable selection in multivariate calibration.

Science.gov (United States)

Yun, Yong-Huan; Wang, Wei-Ting; Deng, Bai-Chuan; Lai, Guang-Bi; Liu, Xin-bo; Ren, Da-Bing; Liang, Yi-Zeng; Fan, Wei; Xu, Qing-Song

2015-03-03

Variable (wavelength or feature) selection techniques have become a critical step for the analysis of datasets with high number of variables and relatively few samples. In this study, a novel variable selection strategy, variable combination population analysis (VCPA), was proposed. This strategy consists of two crucial procedures. First, the exponentially decreasing function (EDF), which is the simple and effective principle of 'survival of the fittest' from Darwin's natural evolution theory, is employed to determine the number of variables to keep and continuously shrink the variable space. Second, in each EDF run, binary matrix sampling (BMS) strategy that gives each variable the same chance to be selected and generates different variable combinations, is used to produce a population of subsets to construct a population of sub-models. Then, model population analysis (MPA) is employed to find the variable subsets with the lower root mean squares error of cross validation (RMSECV). The frequency of each variable appearing in the best 10% sub-models is computed. The higher the frequency is, the more important the variable is. The performance of the proposed procedure was investigated using three real NIR datasets. The results indicate that VCPA is a good variable selection strategy when compared with four high performing variable selection methods: genetic algorithm-partial least squares (GA-PLS), Monte Carlo uninformative variable elimination by PLS (MC-UVE-PLS), competitive adaptive reweighted sampling (CARS) and iteratively retains informative variables (IRIV). The MATLAB source code of VCPA is available for academic research on the website: http://www.mathworks.com/matlabcentral/fileexchange/authors/498750. Copyright © 2015 Elsevier B.V. All rights reserved.

Impacts of category 5 tropical cyclone Fantala (April 2016) on Farquhar Atoll, Seychelles Islands, Indian Ocean

Science.gov (United States)

Duvat, Virginie K. E.; Volto, Natacha; Salmon, Camille

2017-12-01

This paper provides new insights on the impacts of a category 5 tropical cyclone on Indian Ocean atoll reef islands. Using multi-date aerial imagery and field observations, the contribution of tropical cyclone Fantala to shoreline and island change, and to sediment production and transport, was assessed on Farquhar Atoll, Seychelles Islands. Results show that the two largest islands (> 3 km2) only suffered limited land loss (- 1.19 to - 8.35%) while small islets lost 13.17 to 28.45% of their initial land area. Islands and islets exhibited contrasting responses depending on their location, topography and vegetation type. Depending on islands, the retreat of the vegetation line occurred either along all shorelines, or along ocean shoreline only. The structure (wooded vs. grassy) and origin (native vs. introduced) of the vegetation played a major role in island response. Five days after the cyclone, beach width and beach area were multiplied by 1.5 to 10, depending on the setting, and were interpreted as resulting from both sediment reworking and the supply of large amounts of fresh sediments by the reef outer slopes to the island system. Fourth months after the cyclone, extended sheets of loose sediments were still present on the reef flat and in inter-islet channels and shallow lagoon waters, indicating continuing sediment transfer to islands. As a reminder (see Section 3.1.4), beach width uncertainty equals to 6 m for all beach sections.

Resuspension studies at Bikini Atoll

International Nuclear Information System (INIS)

Shinn, J.H.; Homan, D.N.; Robison, W.L.

1980-02-01

The following experiments were conducted on Bikini Atoll to provide key parameters for an assessment of inhalation exposure from plutonium-contaminated dust aerosols: (1) a characterization of background (plutonium activity, dust, plutonium, sea spray, and organic aerosol concentrations); (2) a study of plutonium resuspension from a bare field; (3) a study of plutonium resuspension by traffic; and (4) a study of personal inhalation exposure. Dust concentrations of 21 μg m -3 and sea spray of 34 μg m -3 were the background throughout the Bikini Island except within 50 m of the windward beach. Background concentrations of 239+240 Pu were 60 aCi m -3 in the coconut grove and 264 aCi m -3 over rain-stabilized bare soil. The ratio of plutonium activity in aerosols relative to the activity in underlying soil, defined as the enhancement factor, EF, was typically less than one. Enhancement factors increased about 3.8 as a result of tilling. Plutonium resuspension flux was estimated at 0.49 pCi m -2 year -1 over most of Bikini Island. Aerosol size distributions associated with mass and with plutonium activity were typically log-normal with median aerodynamic diameter 2.44 μm, which decreased to 2.0 μm above freshly tilled soil. The Pu concentration in aerosols collected over disturbed soil increased by a factor of 19.1. Vehicular traffic produced dust pulses typically of 10 s duration, 28 μg m -3 average concentration, and plutonium enhancement factor 2.5. Personal dosimetry showed that enhancement of dust by a worker was a factor of 2.64 for heavy work outdoors and 1.86 for light work in and around houses. Pulmonary deposition of plutonium was calculated for various exposure conditions. The pulmonary deposition ranged from 1476 aCi h -1 to 12 aCi h -1

The dynamics of diverse segmental amplifications in populations of Saccharomyces cerevisiae adapting to strong selection.

Science.gov (United States)

Payen, Celia; Di Rienzi, Sara C; Ong, Giang T; Pogachar, Jamie L; Sanchez, Joseph C; Sunshine, Anna B; Raghuraman, M K; Brewer, Bonita J; Dunham, Maitreya J

2014-03-20

Population adaptation to strong selection can occur through the sequential or parallel accumulation of competing beneficial mutations. The dynamics, diversity, and rate of fixation of beneficial mutations within and between populations are still poorly understood. To study how the mutational landscape varies across populations during adaptation, we performed experimental evolution on seven parallel populations of Saccharomyces cerevisiae continuously cultured in limiting sulfate medium. By combining quantitative polymerase chain reaction, array comparative genomic hybridization, restriction digestion and contour-clamped homogeneous electric field gel electrophoresis, and whole-genome sequencing, we followed the trajectory of evolution to determine the identity and fate of beneficial mutations. During a period of 200 generations, the yeast populations displayed parallel evolutionary dynamics that were driven by the coexistence of independent beneficial mutations. Selective amplifications rapidly evolved under this selection pressure, in particular common inverted amplifications containing the sulfate transporter gene SUL1. Compared with single clones, detailed analysis of the populations uncovers a greater complexity whereby multiple subpopulations arise and compete despite a strong selection. The most common evolutionary adaptation to strong selection in these populations grown in sulfate limitation is determined by clonal interference, with adaptive variants both persisting and replacing one another.

Updated radiological dose assessment of Bikini and Eneu Islands at Bikini Atoll

International Nuclear Information System (INIS)

Robison, W.L.; Mount, M.E.; Phillips, W.A.; Stuart, M.L.; Thompson, S.E.; Conrado, C.L.; Stoker, A.C.

1982-01-01

This report is part of a continuing effort to refine dose assessments for resettlement options at Bikini Atoll. Radionuclide concentration data developed at Bikini Atoll since 1977 have been used in conjunction with recent dietary information and current dose models to develop the annual dose rate and 30- and 50-y integral doses presented here for Bikini and Eneu Island living patterns. The terrestrial food chain is the most significant exposure pathway--it contributes more than 50% of the total dose--and external gamma exposure is the second most significant pathway. Other pathways evaluated are the marine food chain, drinking water, and inhalation. Cesium-137 produces more than 85% of the predicted dose; 90 Sr is the second most significant radionuclide; 60 Co contributes to the external gamma exposure in varying degrees, but is a small part of the total predicted dose; the transuranic radionuclides contribute a small portion of the total predicted lung and bone doses but do present a long-term source of exposure. Maximum annual dose rates for Bikini Island are about 1 rem/y for the whole body and bone marrow when imported foods are available and about 1.9 rem/y when imports are unavailable. Maximum annual dose rates for Eneu Island when imports are available are 130 mrem/y for the whole body and 136 mrem/y for bone marrow. Similar doses when imported foods are unavailable are 245 and 263 mrem/y, respectively. The 30-y integral doses for Bikini Island are about 23 rem for whole body and bone marrow when imported foods are available and more than 40 rem when imports are unavailable. The Eneu Island 30-y integral doses for whole body and bone marrow are about 3 rem when imports are available and 5.5 and 6.1 rem, respectively, when imports are unavailable. Doses from living patterns involving some combination of Bikini and Eneu Islands fall between the doses listed above for each island separately

Detection of selection signatures of population-specific genomic regions selected during domestication process in Jinhua pigs.

Science.gov (United States)

Li, Zhengcao; Chen, Jiucheng; Wang, Zhen; Pan, Yuchun; Wang, Qishan; Xu, Ningying; Wang, Zhengguang

2016-12-01

Chinese pigs have been undergoing both natural and artificial selection for thousands of years. Jinhua pigs are of great importance, as they can be a valuable model for exploring the genetic mechanisms linked to meat quality and other traits such as disease resistance, reproduction and production. The purpose of this study was to identify distinctive footprints of selection between Jinhua pigs and other breeds utilizing genome-wide SNP data. Genotyping by genome reducing and sequencing was implemented in order to perform cross-population extended haplotype homozygosity to reveal strong signatures of selection for those economically important traits. This work was performed at a 2% genome level, which comprised 152 006 SNPs genotyped in a total of 517 individuals. Population-specific footprints of selective sweeps were searched for in the genome of Jinhua pigs using six native breeds and three European breeds as reference groups. Several candidate genes associated with meat quality, health and reproduction, such as GH1, CRHR2, TRAF4 and CCK, were found to be overlapping with the significantly positive outliers. Additionally, the results revealed that some genomic regions associated with meat quality, immune response and reproduction in Jinhua pigs have evolved directionally under domestication and subsequent selections. The identified genes and biological pathways in Jinhua pigs showed different selection patterns in comparison with the Chinese and European breeds. © 2016 Stichting International Foundation for Animal Genetics.

An improved method for removing transuranics from coral soil at Johnston Atoll

International Nuclear Information System (INIS)

Moroney, J.D. III.; Johnson, N.R.; Moroney, K.S.; Mercier, J.R.

1992-01-01

An improved approach for removing mixed plutonium and americium contamination from coral soil matrix at the Defense Nuclear Agency's (DNA's) Johnston Atoll site has been developed by DNA's contractor, TMA/Eberline. The system uses arrays of sensitive radiation detectors coupled with sophisticated computer software newly designed by Eberline Instrument Corporation. The software controls a unique segmented gate methodology for removing contaminated soil from a moving feed supply on conveyor belts. Contaminated soil is diverted to a metal drum for collecting larger sized 'hot' particles (< 5,000 Becquerels) or to a soil washing process designed to remove dispersed low level contamination from a soil fraction consisting of very small particles. Low to intermediate levels of contamination are removed from the soil to meet DNAs criteria for release for unrestricted use based on US EPA guidelines

Detecting Positive Selection of Korean Native Goat Populations Using Next-Generation Sequencing

Science.gov (United States)

Lee, Wonseok; Ahn, Sojin; Taye, Mengistie; Sung, Samsun; Lee, Hyun-Jeong; Cho, Seoae; Kim, Heebal

2016-01-01

Goats (Capra hircus) are one of the oldest species of domesticated animals. Native Korean goats are a particularly interesting group, as they are indigenous to the area and were raised in the Korean peninsula almost 2,000 years ago. Although they have a small body size and produce low volumes of milk and meat, they are quite resistant to lumbar paralysis. Our study aimed to reveal the distinct genetic features and patterns of selection in native Korean goats by comparing the genomes of native Korean goat and crossbred goat populations. We sequenced the whole genome of 15 native Korean goats and 11 crossbred goats using next-generation sequencing (Illumina platform) to compare the genomes of the two populations. We found decreased nucleotide diversity in the native Korean goats compared to the crossbred goats. Genetic structural analysis demonstrated that the native Korean goat and crossbred goat populations shared a common ancestry, but were clearly distinct. Finally, to reveal the native Korean goat’s selective sweep region, selective sweep signals were identified in the native Korean goat genome using cross-population extended haplotype homozygosity (XP-EHH) and a cross-population composite likelihood ratio test (XP-CLR). As a result, we were able to identify candidate genes for recent selection, such as the CCR3 gene, which is related to lumbar paralysis resistance. Combined with future studies and recent goat genome information, this study will contribute to a thorough understanding of the native Korean goat genome. PMID:27989103

Detecting Positive Selection of Korean Native Goat Populations Using Next-Generation Sequencing.

Science.gov (United States)

Lee, Wonseok; Ahn, Sojin; Taye, Mengistie; Sung, Samsun; Lee, Hyun-Jeong; Cho, Seoae; Kim, Heebal

2016-12-01

Goats ( Capra hircus ) are one of the oldest species of domesticated animals. Native Korean goats are a particularly interesting group, as they are indigenous to the area and were raised in the Korean peninsula almost 2,000 years ago. Although they have a small body size and produce low volumes of milk and meat, they are quite resistant to lumbar paralysis. Our study aimed to reveal the distinct genetic features and patterns of selection in native Korean goats by comparing the genomes of native Korean goat and crossbred goat populations. We sequenced the whole genome of 15 native Korean goats and 11 crossbred goats using next-generation sequencing (Illumina platform) to compare the genomes of the two populations. We found decreased nucleotide diversity in the native Korean goats compared to the crossbred goats. Genetic structural analysis demonstrated that the native Korean goat and crossbred goat populations shared a common ancestry, but were clearly distinct. Finally, to reveal the native Korean goat's selective sweep region, selective sweep signals were identified in the native Korean goat genome using cross-population extended haplotype homozygosity (XP-EHH) and a cross-population composite likelihood ratio test (XP-CLR). As a result, we were able to identify candidate genes for recent selection, such as the CCR3 gene, which is related to lumbar paralysis resistance. Combined with future studies and recent goat genome information, this study will contribute to a thorough understanding of the native Korean goat genome.

Influence of Maximum Inbreeding Avoidance under BLUP EBV Selection on Pinzgau Population Diversity

Directory of Open Access Journals (Sweden)

Radovan Kasarda

2011-05-01

Full Text Available Evaluated was effect of mating (random vs. maximum avoidance of inbreeding under BLUP EBV selection strategy. Existing population structure was under Monte Carlo stochastic simulation analyzed from the point to minimize increase of inbreeding. Maximum avoidance of inbreeding under BLUP selection resulted into comparable increase of inbreeding then random mating in average of 10 generation development. After 10 generations of simulation of mating strategy was observed ΔF= 6,51 % (2 sires, 5,20 % (3 sires, 3,22 % (4 sires resp. 2,94 % (5 sires. With increased number of sires selected, decrease of inbreeding was observed. With use of 4, resp. 5 sires increase of inbreeding was comparable to random mating with phenotypic selection. For saving of genetic diversity and prevention of population loss is important to minimize increase of inbreeding in small populations. Classical approach was based on balancing ratio of sires and dams in mating program. Contrariwise in the most of commercial populations small number of sires was used with high mating ratio.

Selection processes in a citrus hybrid population using RAPD markers

Directory of Open Access Journals (Sweden)

Oliveira Roberto Pedroso de

2003-01-01

Full Text Available The objective of this work was to evaluate the processes of selection in a citrus hybrid population using segregation analysis of RAPD markers. The segregation of 123 RAPD markers between 'Cravo' mandarin (Citrus reticulata Blanco and 'Pêra' sweet orange (C. sinensis (L. Osbeck was analysed in a F1 progeny of 94 hybrids. Genetic composition, diversity, heterozygosity, differences in chromosomal structure and the presence of deleterious recessive genes are discussed based on the segregation ratios obtained. A high percentage of markers had a skeweness of the 1:1 expected segregation ratio in the F1 population. Many markers showed a 3:1 segregation ratio in both varieties and 1:3 in 'Pêra' sweet orange, probably due to directional selection processes. The distribution analysis of the frequencies of the segregant markers in a hybrid population is a simple method which allows a better understanding of the genetics of citrus group.

SELECTION OF FISÁLIS POPULATIONS FOR HIBRIDIZATIONS, BASED ON FRUIT TRAITS

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NICOLE TREVISANI

2016-01-01

Full Text Available ABSTRACT The objective of this study was to characterize the genetic variability in fisális populations and select promising parents based on fruit traits. The experimental design consisted of randomized blocks, with six populations. Five plants per treatment were sampled. The evaluated traits were fruit weight, capsule weight, 1000- seed weight and fruit diameter. The data were subjected to multivariate analysis of variance with error specification between and within (p <0.05. Mahalanobis’ distance was used as a measure of genetic dissimilarity. Significant differences for the assessed traits were detected between fisális populations. The ratio error among by within indicated no need for sampling within the experimental unit. Dissimilarity was greatest between Lages and Vacaria. The most discriminating traits were capsule weight, fruit weight and fruit diameter. The multivariate contrasts indicated differences between the populations of Vacaria and from Caçador, Lages and Peru, selected for hybridizations.

Independent Verification Survey of the Clean Coral Storage Pile at the Johnston Atoll Plutonium Contaminated Soil Remediation Project

International Nuclear Information System (INIS)

Wilson-Nichols, M.J.; Egidi, P.V.; Roemer, E.K.; Schlosser, R.M.

2000-01-01

f I The Oak Ridge National Laboratory (ORNL) Environmental Technology Section conducted an independent verification (IV) survey of the clean storage pile at the Johnston Atoll Plutonium Contaminated Soil Remediation Project (JAPCSRP) from January 18-25, 1999. The goal of the JAPCSRP is to restore a 24-acre area that was contaminated with plutonium oxide particles during nuclear testing in the 1960s. The selected remedy was a soil sorting operation that combined radiological measurements and mining processes to identify and sequester plutonium-contaminated soil. The soil sorter operated from about 1990 to 1998. The remaining clean soil is stored on-site for planned beneficial use on Johnston Island. The clean storage pile currently consists of approximately 120,000 m3 of coral. ORNL conducted the survey according to a Sampling and Analysis Plan, which proposed to provide an IV of the clean pile by collecting a minimum number (99) of samples. The goal was to ascertain wi th 95% confidence whether 97% of the processed soil is less than or equal to the accepted guideline (500-Bq/kg or 13.5-pCi/g) total transuranic (TRU) activity

Mapping nuclear craters on Enewetak Atoll, Marshall Islands

Science.gov (United States)

Hampson, John C., Jr.

1986-01-01

In 1984, the U.S. Geological Survey conducted a detailed geologic analysis of two nuclear test craters at Enewetak Atoll, Marshall Islands, on behalf of the Defense Nuclear Agency. A multidisciplinary task force mapped the morphology, surface character, and subsurface structure of two craters, OAK and KOA. The field mapping techniques include echo sounding, sidescan sonar imaging, single-channel and multichannel seismic reflection profiling, a seismic refraction survey, and scuba and submersible operations. All operations had to be navigated precisely and correlatable with subsequent drilling and sampling operations. Mapping with a high degree of precision at scales as large as 1:1500 required corrections that often are not considered in marine mapping. Corrections were applied to the bathymetric data for location of the echo- sounding transducer relative to the navigation transponder on the ship and for transducer depth, speed of sound, and tidal variations. Sidescan sonar, single-channel seismic reflection, and scuba and submersible data were correlated in depth and map position with the bathymetric data to provide a precise, internally consistent data set. The multichannel and refraction surveys were conducted independently but compared well with bathymetry. Examples drawn from processing the bathymetric, sidescan sonar, and single- channel reflection data help illustrate problems and procedures in precision mapping.

Selection for altruism through random drift in variable size populations

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Houchmandzadeh Bahram

2012-05-01

Full Text Available Abstract Background Altruistic behavior is defined as helping others at a cost to oneself and a lowered fitness. The lower fitness implies that altruists should be selected against, which is in contradiction with their widespread presence is nature. Present models of selection for altruism (kin or multilevel show that altruistic behaviors can have ‘hidden’ advantages if the ‘common good’ produced by altruists is restricted to some related or unrelated groups. These models are mostly deterministic, or assume a frequency dependent fitness. Results Evolutionary dynamics is a competition between deterministic selection pressure and stochastic events due to random sampling from one generation to the next. We show here that an altruistic allele extending the carrying capacity of the habitat can win by increasing the random drift of “selfish” alleles. In other terms, the fixation probability of altruistic genes can be higher than those of a selfish ones, even though altruists have a smaller fitness. Moreover when populations are geographically structured, the altruists advantage can be highly amplified and the fixation probability of selfish genes can tend toward zero. The above results are obtained both by numerical and analytical calculations. Analytical results are obtained in the limit of large populations. Conclusions The theory we present does not involve kin or multilevel selection, but is based on the existence of random drift in variable size populations. The model is a generalization of the original Fisher-Wright and Moran models where the carrying capacity depends on the number of altruists.

Seafloor geomorphology and geology of the Kingman Reef-Palmyra Atoll region, Central Pacific Ocean

Science.gov (United States)

Eakins, Barry; Barth, Ginger; Scheirer, Dan; Mosher, Dave; Armstrong, Andy

2017-04-01

Kingman Reef and Palmyra Atoll are the exposed summits of two seamounts within the Line Islands Volcanic Chain in the Central Pacific Ocean. Both are U.S. Territories, and the Exclusive Economic Zone around the islands was partially surveyed in 1991 with GLORIA sidescan sonar and seismic reflection profiling. New multibeam swath sonar surveys were conducted in 2010, 2015, and 2016 around the islands, in support of U.S. Extended Continental Shelf investigations. Numerous transits through the region by research vessels have collected additional multibeam swath sonar data. We present new, detailed maps of bathymetry, sidescan sonar imagery, geology, and sediment isopachs of the seafloor surrounding the islands, and how these have informed our understanding of the islands' margins. The islands are the last subaerial remnants of a complex, horse-shoe-shaped volcanic platform spanning roughly 200 km in diameter. The elevated platform from which the seamounts arise comprises at least 10 individual volcanic centers that have heights exceeding 3000m above the nearby abyssal plains. Gravity modeling suggests that the elevated platform is compensated by thickened crust. Strong carbonate caps and voluminous sediment accumulations flanking the platform indicate that the volcanoes were once shallow-water or emergent systems. These systems produced vast quantities of carbonate sediment that were shed to a deep interior basin to the east of Palmyra Atoll, and to nearby abyssal plains. The identification of mass failures, sediment reworking and bedforms, and channel networks provide evidence for extensive sedimentary processes around these volcanic centers. Analysis of the seamounts atop the elevated platform and in the seamount province to the northwest shows that flat-topped seamounts ("guyots") are principally found at depths shallower than 1300 meters, while peaked seamounts are almost exclusively found at greater depths. This constrains the amount of regional subsidence that

Prey selection by a reintroduced lion population in the Greater ...

African Journals Online (AJOL)

Prey selection by a reintroduced lion population in the Greater Makalali Conservancy, South Africa. Dave Druce, Heleen Genis, Jonathan Braak, Sophie Greatwood, Audrey Delsink, Ross Kettles, Luke Hunter, Rob Slotow ...

Genome Scan for Selection in Structured Layer Chicken Populations Exploiting Linkage Disequilibrium Information.

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Mahmood Gholami

Full Text Available An increasing interest is being placed in the detection of genes, or genomic regions, that have been targeted by selection because identifying signatures of selection can lead to a better understanding of genotype-phenotype relationships. A common strategy for the detection of selection signatures is to compare samples from distinct populations and to search for genomic regions with outstanding genetic differentiation. The aim of this study was to detect selective signatures in layer chicken populations using a recently proposed approach, hapFLK, which exploits linkage disequilibrium information while accounting appropriately for the hierarchical structure of populations. We performed the analysis on 70 individuals from three commercial layer breeds (White Leghorn, White Rock and Rhode Island Red, genotyped for approximately 1 million SNPs. We found a total of 41 and 107 regions with outstanding differentiation or similarity using hapFLK and its single SNP counterpart FLK respectively. Annotation of selection signature regions revealed various genes and QTL corresponding to productions traits, for which layer breeds were selected. A number of the detected genes were associated with growth and carcass traits, including IGF-1R, AGRP and STAT5B. We also annotated an interesting gene associated with the dark brown feather color mutational phenotype in chickens (SOX10. We compared FST, FLK and hapFLK and demonstrated that exploiting linkage disequilibrium information and accounting for hierarchical population structure decreased the false detection rate.

Accuracy of genomic selection in biparental populations of flax (Linum usitatissimum L.

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Frank M. You

2016-08-01

Full Text Available Flax is an important economic crop for seed oil and stem fiber. Phenotyping of traits such as seed yield, seed quality, stem fiber yield, and quality characteristics is expensive and time consuming. Genomic selection (GS refers to a breeding approach aimed at selecting preferred individuals based on genomic estimated breeding values predicted by a statistical model based on the relationship between phenotypes and genome-wide genetic markers. We evaluated the prediction accuracy of GS (rMP and the efficiency of GS relative to phenotypic selection (RE for three GS models: ridge regression best linear unbiased prediction (RR-BLUP, Bayesian LASSO (BL, and Bayesian ridge regression (BRR, for seed yield, oil content, iodine value, linoleic, and linolenic acid content with a full and a common set of genome-wide simple sequence repeat markers in each of three biparental populations. The three GS models generated similar rMP and RE, while BRR displayed a higher coefficient of determination (R2 of the fitted models than did RR-BLUP or BL. The mean rMP and RE varied for traits with different heritabilities and was affected by the genetic variation of the traits in the populations. GS for seed yield generated a mean RE of 1.52 across populations and marker sets, a value significantly superior to that for direct phenotypic selection. Our empirical results provide the first validation of GS in flax and demonstrate that GS could increase genetic gain per unit time for linseed breeding. Further studies for selection of training populations and markers are warranted.

Metropolitan migration and population growth in selected developing countries.

Science.gov (United States)

1983-01-01

The purpose of this article is to estimate the components of metropolitan population growth in selected developing countries during 1960-1970 period. The study examines population growth in 26 cities: 5 are in Africa, 8 in Asia, and 13 in Latin America, using data from national census publications. These cities in general are the political capitals of their countries, but some additional large cities were selected in Brazil, Mexico, and South Africa. All cities, at the beginning of the 1960-1970 decade had over 500,000 population; Accra, the only exception, reached this population level during the 1960s. Some cities had over 4 million residents in 1970. Net migration contributed about 37% to total metropolitan population growth; the remainder of the growth is attributable to natural increase. Migration has a much stronger impact on metropolitan growth than suggested by the above figure: 1) Several metropolitan areas, for various reasons, are unlikely to receive many migrants; without those cities, the share of metropolitan growth from net migration is 44%. 2) Estimates of the natural increase of migrants after their arrival in the metropolitan areas, when added to migration itself, changes the total contribution of migration to 49% in some metropolitan areas. 3) Even where net migration contributes a smaller proportion to metropolitan growth than natural increase, the rates of net migration are generally high and should be viewed in the context of rapid metropolitan population growth from natural increase alone. Finally, the paper also compares the components of metropolitan growth with the components of growth in the remaining urban areas. The results show that the metropolitan areas, in general, grow faster than the remaining urban areas, and that this more rapid growth is mostly due to a higher rate of net migration. Given the significance of migration for metropolitan growth, further investigations of the effects of these migration streams, particularly with

Family losses following truncation selection in populations of half-sib families

Science.gov (United States)

J. H. Roberds; G. Namkoong; H. Kang

1980-01-01

Family losses during truncation selection may be sizable in populations of half-sib families. Substantial losses may occur even in populations containing little or no variation among families. Heavier losses will occur, however, under conditions of high heritability where there is considerable family variation. Standard deviations and therefore variances of family loss...

Selected fishery and population parameters of eight shore-angling ...

African Journals Online (AJOL)

Selected fishery and population parameters of eight shore-angling species in the ... Five different estimates of natural mortality (M), and the coefficients of ... for the most abundant species, blacktail Diplodus capensis, with a mean CPUE of 0.252 ... Keywords: catch per unit effort; fisheries management; marine protected area; ...

Allozyme diversity of selected and natural loblolly pine populations

Science.gov (United States)

Ronald C. Schmidtling; E. Carroll; T. LaFarge

1999-01-01

Loblolly pine (Pinus taeda L.) megagametophytes and embryos were examined electrophoretically to compare the extent and distribution of genetic variability in allozymes of selected and wild populations. Range-wide collections of three different types were investigated in this study. These consisted of seed sampled from (1) a provenance test...

Modeling patterns of coral bleaching at a remote Central Pacific atoll.

Science.gov (United States)

Williams, Gareth J; Knapp, Ingrid S; Maragos, James E; Davy, Simon K

2010-09-01

A mild bleaching event (9.2% prevalence) at Palmyra Atoll occurred in response to the 2009 ENSO, when mean water temperature reached 29.8-30.1 degrees C. Prevalence among both abundant and sparse taxa varied with no clear pattern in susceptibility relating to coral morphology. Seven taxon-specific models showed that turbidity exacerbated while prior exposure to higher background temperatures alleviated bleaching, with these predictors explaining an average 16.3% and 11.5% variation in prevalence patterns, respectively. Positive associations occurred between bleaching prevalence and both immediate temperature during the bleaching event (average 8.4% variation explained) and increased sand cover (average 3.7%). Despite these associations, mean unexplained variation in prevalence equalled 59%. Lower bleaching prevalence in areas experiencing higher background temperatures suggests acclimation to temperature stress among several coral genera, while WWII modifications may still be impacting the reefs via shoreline sediment re-distribution and increased turbidity, exacerbating coral bleaching susceptibility during periods of high temperature stress. Copyright 2010 Elsevier Ltd. All rights reserved.

Report of the preliminary mission of radiological controls on the island of Mangareva and the atolls of Tureia and Hao (French Polynesia). Investigation performed by the CRIIRAD laboratory on the request of the inquiry Commission on consequences of atmospheric nuclear tests

International Nuclear Information System (INIS)

2006-01-01

After a presentation of the objectives of the mission, and a summary of the undertaken actions on each site, this document gives some general information on radionuclides and on the sampling and analysis method. Then, it discusses the results obtained by radiological analyses and gives recommendations about the current radiological situation of the studied island and atolls. It shows that official assessment of radiation doses undergone by the French Polynesia population during the period atmospheric nuclear tests must be revised. It outlines the need of new exhaustive investigations on health consequences of these past exposures to ionizing radiation. Recommendations are formulated

Concentrations of radionuclides in fish collected from Bikini Atoll between 1977 and 1984

Energy Technology Data Exchange (ETDEWEB)

Noshkin, V.E.; Wong, K.M.; Eagle, R.J.; Jokela, T.A.; Brunk, J.A.

1986-07-01

This report summarizes all available data on the concentrations of radionuclides in fish from Bikini Atoll between 1977 and 1984. As found in other global studies, /sup 137/Cs is most highly accumulated in edible flesh of all species of fish, the lowest fractions are found in the bone or liver. The mean concentration of /sup 137/Cs in muscle of reef fish from the southern part of the atoll is comparable to the global fallout concentration measured in market samples of fish collected from Chicago, Illinois, in 1982. /sup 90/Sr is generally associated with non-edible parts of fish, such as bone or viscera. Twenty-five to fifty percent of the total body burden of /sup 60/Co is accumulated in the muscle tissue; the remainder is distributed among the liver, skin, and viscera. The mean concentration of /sup 60/Co in fish has been decreasing at a rate faster than radiological decay alone. Most striking is the range of /sup 207/Bi concentrations among different species of fish collected at the same time and place. Highest concentrations of /sup 207/Bi were consistently detected in the muscle (and other tissues) of goatfish and some of the pelagic lagoon fish. In other reef fish, such as mullet, surgeonfish, and parrotfish, /sup 207/Bi was usually below detection limits by gamma spectrometry. Over 70% of the whole-body activity of /sup 207/Bi in goatfish is associated with the muscle tissue, whereas less than 5% is found in the muscle of mullet and surgeonfish. Neither /sup 239 +240/Pu nor /sup 241/Am is significantly accumulated in the muscle tissue of any species of fish. Apparently, /sup 238/Pu is in a more readily available form for accumulation by fishes than /sup 239 +240/Pu. Based on a daily ingestion rate of 200 q of fish flesh, dose rates to individuals through the fish-food ingestion pathway are well below current Federal guidelines.

Clipperton Atoll (eastern Pacific): oceanography, geomorphology, reef-building coral ecology and biogeography

Science.gov (United States)

Glynn, P. W.; Veron, J. E. N.; Wellington, G. M.

1996-06-01

Coral reef geomorphology and community composition were investigated in the tropical northeastern Pacific during April 1994. Three areas were surveyed in the Revillagigedo Islands (Mexico), and an intensive study was conducted on Clipperton Atoll (1,300 km SW of Acapulco), including macro-scale surface circulation, sea surface temperature (SST) climatology, geomorphology, coral community structure, zonation, and biogeography. Satellite-tracked drifter buoys from 1979 1993 demonstrated complex patterns of surface circulation with dominantly easterly flow (North Equatorial Counter Current, NECC), but also westerly currents (South Equatorial Current, SEC) that could transport propagules to Clipperton from both central and eastern Pacific regions. The northernmost latitude reached by the NECC is not influenced by El Niño-Southern Oscillation (ENSO) events, but easterly flow velocity evidently is accelerated at such times. Maximum NECC flow rates indicate that the eastern Pacific barrier can be bridged in 60 to 120 days. SST anomalies at Clipperton occur during ENSO events and were greater at Clipperton in 1987 than during 1982 1983. Shallow (15 18 m)and deep (50 58 m) terraces are present around most of Clipperton, probably representing Modern and late Pleistocene sea level stands. Although Clipperton is a well developed atoll with high coral cover, the reef-building fauna is depauperate, consisting of only 7 species of scleractinian corals belonging to the genera Pocillopora, Porites, Pavona and Leptoseris, and 1 species of hydrocoral in the genus Millepora. The identities of the one Pocilpopora species and one of the two Porites species are still unknown. Two of the remaining scleractinians ( Pavona minuta, Leptoseris scabra) and the hydrocoral ( Millepora exaesa), all formerly known from central and western Pacific localities, represent new eastern Pacific records. Scleractinian corals predominate (10 100% cover) over insular shelf depths of 8 to 60m, and crustose

Selection Component Analysis of Natural Polymorphisms using Population Samples Including Mother-Offspring Combinations, II

DEFF Research Database (Denmark)

Jarmer, Hanne Østergaard; Christiansen, Freddy Bugge

1981-01-01

Population samples including mother-offspring combinations provide information on the selection components: zygotic selection, sexual selection, gametic seletion and fecundity selection, on the mating pattern, and on the deviation from linkage equilibrium among the loci studied. The theory...

The use of comparative 137Cs body burden estimates from environmental data/models and whole body counting to evaluate diet models for the ingestion pathway

International Nuclear Information System (INIS)

Robison, W.L.; Sun, C.

1997-01-01

Rongelap and Utirik Atolls were contaminated on 1 March 1954, by a U.S. nuclear test at Bikini Atoll code named BRAVO. The people at both atolls were removed from their atolls in the first few days after the detonation and were returned to their atolls at different times. Detailed studies have been carried out over the years by Lawrence Livermore National Laboratory (LLNL) to determine the radiological conditions at the atolls and estimate the doses to the populations. The contribution of each exposure pathway and radionuclide have been evaluated. All dose assessments show that the major potential contribution to the estimated dose is 137 Cs uptake via the terrestrial food chain. Brookhaven National Laboratory (BNL) has carried out an extensive whole body counting program at both atolls over several years to directly measure the 137 Cs body burden. Here we compare the estimates of the body burdens from the LLNL environmental method with body burdens measured by the BNL whole body counting method. The combination of the results from both methods is used to evaluate proposed diet models to establish more realistic dose assessments. Very good agreement is achieved between the two methods with a diet model that includes both local and imported foods. Other diet models greatly overestimate the body burdens (i.e., dose) observed by whole body counting. The upper 95% confidence limit of interindividual variability around the population mean value based on the environmental method is similar to that calculated from direct measurement by whole body counting. Moreover, the uncertainty in the population mean value based on the environmental method is in very good agreement with the whole body counting data. This provides additional confidence in extrapolating the estimated doses calculated by the environmental method to other islands and atolls. 46 refs., 8 figs., 5 tabs

Concurrent Sr/Ca Ratios and Bomb Test 14C Records from a Porites evermanni Colony on Kure Atoll: SST, Climate Change, Ocean Circulation and Management Applications

Science.gov (United States)

Covarrubias, S.; Potts, D.; Siciliano, D.; Andrews, A.; Franks, R.

2013-12-01

Coral reefs near their latitudinal and ecological limits may be affected disproportionately by global climate changes, especially by changing sea surface temperatures (SST's). One such reef is Kure Atoll, the northernmost reef in the Hawaiian chain. Kure Atoll experiences dramatic temperature and seasonal differences throughout the year. Tracking these fluctuations is important for understanding recent physical forces affecting coral growth in such marginal reefs, and for predicting likely responses to future climate and oceanic changes. We used Sr/Ca ratios of a 50cm Porites evermanni coral core collected in Kure (September 2002) as a SST proxy for reconstructing a temperature timescale spanning the length of the core (~62 years). After cutting a 5 mm thick slab through the center growth axis and X-raying it to identify annual density banding, we extracted 4 equally-spaced samples from each annual increment to quantify, seasonal, inter-annual, and decadal SST patterns. We measured Sr and Ca concentrations by Inductively Coupled Plasma-Optical Emission Spectroscopy (ICP-OES). We then converted Sr/Ca ratios (mmol/mol) to SST using published equations, and calibrated the more recent SST estimates against satellite-based SST imagery and instrumental records from Midway Atoll (ca. 90 km to SE). We coupled the ICP-OES data with Laser Ablation Inductively Coupled Plasma Mass Spectrometry (LA-ICP-MS) scans along the core to provide higher temporal resolution for interpreting intra-seasonal and inter-seasonal trends. Higher resolution of temperature dating can help us interpret strong inter-seasonal changes not readily seen with low resolution measurements, giving us the ability to track temperature anomalies at interannual and decadal timescales, such as El Niño/Southern Oscillation or La Niña/North Pacific Decadal Oscillation. Further, the SST signature from the Sr/Ca analyses are being used in conjunction with bomb radiocarbon signals in order to establish a complete

Alleles versus genotypes: Genetic interactions and the dynamics of selection in sexual populations

Science.gov (United States)

Neher, Richard

2010-03-01

Physical interactions between amino-acids are essential for protein structure and activity, while protein-protein interactions and regulatory interactions are central to cellular function. As a consequence of these interactions, the combined effect of two mutations can differ from the sum of the individual effects of the mutations. This phenomenon of genetic interaction is known as epistasis. However, the importance of epistasis and its effects on evolutionary dynamics are poorly understood, especially in sexual populations where recombination breaks up existing combinations of alleles to produce new ones. Here, we present a computational model of selection dynamics involving many epistatic loci in a recombining population. We demonstrate that a large number of polymorphic interacting loci can, despite frequent recombination, exhibit cooperative behavior that locks alleles into favorable genotypes leading to a population consisting of a set of competing clones. As the recombination rate exceeds a certain critical value this ``genotype selection'' phase disappears in an abrupt transition giving way to ``allele selection'' - the phase where different loci are only weakly correlated as expected in sexually reproducing populations. Clustering of interacting sets of genes on a chromosome leads to the emergence of an intermediate regime, where localized blocks of cooperating alleles lock into genetic modules. Large populations attain highest fitness at a recombination rate just below critical, suggesting that natural selection might tune recombination rates to balance the beneficial aspect of exploration of genotype space with the breaking up of synergistic allele combinations.

Preliminary hard and soft bottom seafloor substrate map (40m grid) derived from an unsupervised classification of gridded backscatter and bathymetry derivatives at Rose Atoll, Territory of American Samoa, USA.

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Preliminary hard and soft seafloor substrate map derived from an unsupervised classification of multibeam backscatter and bathymetry derivatives at Rose Atoll,...

Group selection on population size affects life-history patterns in the entomopathogenic nematode Steinernema carpocapsae.

Science.gov (United States)

Bashey, Farrah; Lively, Curtis M

2009-05-01

Selection is recognized to operate on multiple levels. In disease organisms, selection among hosts is thought to provide an important counterbalance to selection for faster growth within hosts. We performed three experiments, each selecting for a divergence in group size in the entomopathogenic nematode, Steinernema carpocapsae. These nematodes infect and kill insect larvae, reproduce inside the host carcass, and emerge as infective juveniles. We imposed selection on group size by selecting among hosts for either high or low numbers of emerging nematodes. Our goal was to determine whether this trait could respond to selection at the group level, and if so, to examine what other traits would evolve as correlated responses. One of the three experiments showed a significant response to group selection. In that experiment, the high-selected treatment consistently produced more emerging nematodes per host than the low-selected treatment. In addition, nematodes were larger and they emerged later from hosts in the low-selected lines. Despite small effective population sizes, the effects of inbreeding were small in this experiment. Thus, selection among hosts can be effective, leading to both a direct evolutionary response at the population level, as well as to correlated responses in populational and individual traits.

HLA DNA sequence variation among human populations: molecular signatures of demographic and selective events.

Directory of Open Access Journals (Sweden)

Stéphane Buhler

2011-02-01

Full Text Available Molecular differences between HLA alleles vary up to 57 nucleotides within the peptide binding coding region of human Major Histocompatibility Complex (MHC genes, but it is still unclear whether this variation results from a stochastic process or from selective constraints related to functional differences among HLA molecules. Although HLA alleles are generally treated as equidistant molecular units in population genetic studies, DNA sequence diversity among populations is also crucial to interpret the observed HLA polymorphism. In this study, we used a large dataset of 2,062 DNA sequences defined for the different HLA alleles to analyze nucleotide diversity of seven HLA genes in 23,500 individuals of about 200 populations spread worldwide. We first analyzed the HLA molecular structure and diversity of these populations in relation to geographic variation and we further investigated possible departures from selective neutrality through Tajima's tests and mismatch distributions. All results were compared to those obtained by classical approaches applied to HLA allele frequencies.Our study shows that the global patterns of HLA nucleotide diversity among populations are significantly correlated to geography, although in some specific cases the molecular information reveals unexpected genetic relationships. At all loci except HLA-DPB1, populations have accumulated a high proportion of very divergent alleles, suggesting an advantage of heterozygotes expressing molecularly distant HLA molecules (asymmetric overdominant selection model. However, both different intensities of selection and unequal levels of gene conversion may explain the heterogeneous mismatch distributions observed among the loci. Also, distinctive patterns of sequence divergence observed at the HLA-DPB1 locus suggest current neutrality but old selective pressures on this gene. We conclude that HLA DNA sequences advantageously complement HLA allele frequencies as a source of data used

Applications of random forest feature selection for fine-scale genetic population assignment.

Science.gov (United States)

Sylvester, Emma V A; Bentzen, Paul; Bradbury, Ian R; Clément, Marie; Pearce, Jon; Horne, John; Beiko, Robert G

2018-02-01

Genetic population assignment used to inform wildlife management and conservation efforts requires panels of highly informative genetic markers and sensitive assignment tests. We explored the utility of machine-learning algorithms (random forest, regularized random forest and guided regularized random forest) compared with F ST ranking for selection of single nucleotide polymorphisms (SNP) for fine-scale population assignment. We applied these methods to an unpublished SNP data set for Atlantic salmon ( Salmo salar ) and a published SNP data set for Alaskan Chinook salmon ( Oncorhynchus tshawytscha ). In each species, we identified the minimum panel size required to obtain a self-assignment accuracy of at least 90% using each method to create panels of 50-700 markers Panels of SNPs identified using random forest-based methods performed up to 7.8 and 11.2 percentage points better than F ST -selected panels of similar size for the Atlantic salmon and Chinook salmon data, respectively. Self-assignment accuracy ≥90% was obtained with panels of 670 and 384 SNPs for each data set, respectively, a level of accuracy never reached for these species using F ST -selected panels. Our results demonstrate a role for machine-learning approaches in marker selection across large genomic data sets to improve assignment for management and conservation of exploited populations.

A selective sweep in a Varroa destructor resistant honeybee (Apis mellifera) population.

Science.gov (United States)

Lattorff, H Michael G; Buchholz, Josephine; Fries, Ingemar; Moritz, Robin F A

2015-04-01

The mite Varroa destructor is one of the most dangerous parasites of the Western honeybee (Apis mellifera) causing enormous colony losses worldwide. Various chemical treatments for the control of the Varroa mite are currently in use, which, however, lead to residues in bee products and often to resistance in mites. This facilitated the exploration of alternative treatment methods and breeding for mite resistant honeybees has been in focus for breeders in many parts of the world with variable results. Another approach has been applied to a honeybee population on Gotland (Sweden) that was exposed to natural selection and survived Varroa-infestation for more than 10years without treatment. Eventually this population became resistant to the parasite by suppressing the reproduction of the mite. A previous QTL mapping study had identified a region on chromosome 7 with major loci contributing to the mite resistance. Here, a microsatellite scan of the significant candidate QTL regions was used to investigate potential footprints of selection in the original population by comparing the study population on Gotland before (2000) and after selection (2007). Genetic drift had caused an extreme loss of genetic diversity in the 2007 population for all genetic markers tested. In addition to this overall reduction of heterozygosity, two loci on chromosome 7 showed an even stronger and significant reduction in diversity than expected from genetic drift alone. Within the selective sweep eleven genes are annotated, one of them being a putative candidate to interfere with reduced mite reproduction. A glucose-methanol-choline oxidoreductase (GMCOX18) might be involved in changing volatiles emitted by bee larvae that might be essential to trigger oogenesis in Varroa. Copyright © 2015 Elsevier B.V. All rights reserved.

Population genomics identifies the origin and signatures of selection of Korean weedy rice

OpenAIRE

He, Qiang; Kim, Kyu?Won; Park, Yong?Jin

2016-01-01

Summary Weedy rice is the same biological species as cultivated rice (Oryza sativa); it is also a noxious weed infesting rice fields worldwide. Its formation and population?selective or ?adaptive signatures are poorly understood. In this study, we investigated the phylogenetics, population structure and signatures of selection of Korean weedy rice by determining the whole genomes of 30 weedy rice, 30 landrace rice and ten wild rice samples. The phylogenetic tree and results of ancestry infere...

Proximity to encroaching coconut palm limits native forest water use and persistence on a Pacific atoll

Science.gov (United States)

Krauss, Ken W.; Duberstein, Jamie A.; Cormier, Nicole; Young, Hillary S.; Hathaway, Stacie A.

2015-01-01

Competition for fresh water between native and introduced plants is one important challenge facing native forests as rainfall variability increases. Competition can be especially acute for vegetation on Pacific atolls, which depend upon consistent rainfall to replenish shallow groundwater stores. Patterns of sap flow, water use, and diameter growth of Pisonia grandis trees were investigated on Sand Islet, Palmyra Atoll, Line Islands, during a period of low rainfall. Sap flow in the outer sapwood was reduced by 53% for P. grandis trees growing within coconut palm (Cocos nucifera) stands (n = 9) versus away from coconut palm (n = 9). This suggested that water uptake was being limited by coconut palm. Radial patterns of sap flow into the sapwood of P. grandis also differed between stands with and without coconut palm, such that individual tree water use for P. grandis ranged from 14 to 67 L day−1, averaging 47·8 L day−1 without coconut palm and 23·6 L day−1 with coconut palm. Diameter growth of P. grandis was measured from nine islets. In contrast to sap flow, competition with coconut palm increased diameter growth by 89%, equating to an individual tree basal area increment of 5·4 versus 10·3 mm2 day−1. Greater diameter growth countered by lower rates of water use by P. grandis trees growing in competition with coconut palm suggests that stem swell may be associated with water storage when positioned in the understory of coconut palm, and may facilitate survival when water becomes limiting until too much shading overwhelms P. grandis. 

Warning signal brightness variation: sexual selection may work under the radar of natural selection in populations of a polytypic poison frog.

Science.gov (United States)

Crothers, Laura R; Cummings, Molly E

2013-05-01

Though theory predicts consistency of warning signals in aposematic species to facilitate predator learning, variation in these signals often occurs in nature. The strawberry poison frog Dendrobates pumilio is an exceptionally polytypic (populations are phenotypically distinct) aposematic frog exhibiting variation in warning color and brightness. In the Solarte population, males and females both respond differentially to male brightness variation. Here, we demonstrate through spectrophotometry and visual modeling that aposematic brightness variation within this population is likely visible to two putative predators (crabs, snakes) and conspecifics but not to the presumed major predator (birds). This study thus suggests that signal brightness within D. pumilio populations can be shaped by sexual selection, with limited opportunity for natural selection to influence this trait due to predator sensory constraints. Because signal brightness changes can ultimately lead to changes in hue, our findings at the within-population level can provide insights into understanding this polytypism at across-population scales.

Population SAMC vs SAMC: Convergence and Applications to Gene Selection Problems

KAUST Repository

Faming Liang, Mingqi Wu

2013-01-01

The Bayesian model selection approach has been adopted by more and more people when analyzing a large data. However, it is known that the reversible jump MCMC (RJMCMC) algorithm, which is perhaps the most popular MCMC algorithm for Bayesian model selection, is prone to get trapped into local modes when the model space is complex. The stochastic approximation Monte Carlo (SAMC) algorithm essentially overcomes the local trap problem suffered by conventional MCMC algorithms by introducing a self-adjusting mechanism based on the past samples. In this paper, we propose a population SAMC (Pop-SAMC) algorithm, which works on a population of SAMC chains and can make use of crossover operators from genetic algorithms to further improve its efficiency. Under mild conditions, we show the convergence of this algorithm. Comparing to the single chain SAMC algorithm, Pop-SAMC provides a more efficient self-adjusting mechanism and thus can converge faster. The effectiveness of Pop-SAMC for Bayesian model selection problems is examined through a change-point identification problem and a gene selection problem. The numerical results indicate that Pop-SAMC significantly outperforms both the single chain SAMC and RJMCMC.

Preliminary hard and soft bottom seafloor substrate map (5m grid) derived from an unsupervised classification of gridded backscatter and bathymetry derivatives at Rose Atoll Lagoon, Territory of American Samoa, USA.

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Preliminary hard and soft seafloor substrate map derived from an unsupervised classification of multibeam backscatter and bathymetry derivatives at Rose Atoll...

The flip-or-flop boutique: Marine debris on the shores of St Brandon's rock, an isolated tropical atoll in the Indian Ocean.

Science.gov (United States)

Bouwman, Hindrik; Evans, Steven W; Cole, Nik; Choong Kwet Yive, Nee Sun; Kylin, Henrik

2016-03-01

Isolated coral atolls are not immune from marine debris accumulation. We identified Southeast Asia, the Indian sub-continent, and the countries on the Arabian Sea as most probable source areas of 50 000 items on the shores of St. Brandon's Rock (SBR), Indian Ocean. 79% of the debris was plastics. Flip-flops, energy drink bottles, and compact fluorescent lights (CFLs) were notable item types. The density of debris (0.74 m(-)(1) shore length) is comparable to similar islands but less than mainland sites. Intact CFLs suggests product-facilitated long-range transport of mercury. We suspect that aggregated marine debris, scavenged by the islands from currents and gyres, could re-concentrate pollutants. SBR islets accumulated debris types in different proportions suggesting that many factors act variably on different debris types. Regular cleaning of selected islets will take care of most of the accumulated debris and may improve the ecology and tourism potential. However, arrangements and logistics require more study. Copyright © 2016 Elsevier Ltd. All rights reserved.

Detecting Signatures of Positive Selection along Defined Branches of a Population Tree Using LSD.

Science.gov (United States)

Librado, Pablo; Orlando, Ludovic

2018-06-01

Identifying the genomic basis underlying local adaptation is paramount to evolutionary biology, and bears many applications in the fields of conservation biology, crop, and animal breeding, as well as personalized medicine. Although many approaches have been developed to detect signatures of positive selection within single populations and population pairs, the increasing wealth of high-throughput sequencing data requires improved methods capable of handling multiple, and ideally large number of, populations in a single analysis. In this study, we introduce LSD (levels of exclusively shared differences), a fast and flexible framework to perform genome-wide selection scans, along the internal and external branches of a given population tree. We use forward simulations to demonstrate that LSD can identify branches targeted by positive selection with remarkable sensitivity and specificity. We illustrate a range of potential applications by analyzing data from the 1000 Genomes Project and uncover a list of adaptive candidates accompanying the expansion of anatomically modern humans out of Africa and their spread to Europe.

Site selection and evaluation for nuclear power plants with respect to population distribution

International Nuclear Information System (INIS)

1980-01-01

This safety guide, relating population distribution to site selection and evaluation, for nuclear power plants, forms part of the IAEA's programme, referred to as the NUSS programme (Nuclear Safety Standards). The guide presents population distribution data, requirements, examples of site screening methods, and an overview of radiological impact assessment with respect to population distribution

Evaluating the potential for near-shore bathymetry on the Majuro Atoll, Republic of the Marshall Islands, using Landsat 8 and WorldView-3 imagery

Science.gov (United States)

Poppenga, Sandra K.; Palaseanu-Lovejoy, Monica; Gesch, Dean B.; Danielson, Jeffrey J.; Tyler, Dean J.

2018-04-16

Satellite-derived near-shore bathymetry (SDB) is becoming an increasingly important method for assessing vulnerability to climate change and natural hazards in low-lying atolls of the northern tropical Pacific Ocean. Satellite imagery has become a cost-effective means for mapping near-shore bathymetry because ships cannot collect soundings safely while operating close to the shore. Also, green laser light detection and ranging (lidar) acquisitions are expensive in remote locations. Previous research has demonstrated that spectral band ratio-based techniques, commonly called the natural logarithm approach, may lead to more precise measurements and modeling of bathymetry because of the phenomenon that different substrates at the same depth have approximately equal ratio values. The goal of this research was to apply the band ratio technique to Landsat 8 at-sensor radiance imagery and WorldView-3 atmospherically corrected imagery in the coastal waters surrounding the Majuro Atoll, Republic of the Marshall Islands, to derive near-shore bathymetry that could be incorporated into a seamless topobathymetric digital elevation model of Majuro. Attenuation of light within the water column was characterized by measuring at-sensor radiance and reflectance at different depths and calculating an attenuation coefficient. Bathymetric lidar data, collected by the U.S. Naval Oceanographic Office in 2006, were used to calibrate the SDB results. The bathymetric lidar yielded a strong linear relation with water depths. The Landsat 8-derived SDB estimates derived from the blue/green band ratio exhibited a water attenuation extinction depth of 6 meters with a coefficient of determination R2=0.9324. Estimates derived from the coastal/red band ratio had an R2=0.9597. At the same extinction depth, SDB estimates derived from WorldView-3 imagery exhibited an R2=0.9574. Because highly dynamic coastal shorelines can be affected by erosion, wetland loss, hurricanes, sea-level rise, urban

A comparison of two methods for prediction of response and rates of inbreeding in selected populations with the results obtained in two selection experiments

NARCIS (Netherlands)

Loywyck, V.; Bijma, P.; Pinard-van der Laan, M.H.; Arendonk, van J.A.M.; Verrier, E.

2005-01-01

Selection programmes are mainly concerned with increasing genetic gain. However, short-term progress should not be obtained at the expense of the within-population genetic variability. Different prediction models for the evolution within a small population of the genetic mean of a selected trait,

Evolution in an Afternoon: Rapid Natural Selection and Adaptation of Bacterial Populations

Science.gov (United States)

Delpech, Roger

2009-01-01

This paper describes a simple, rapid and low-cost technique for growing bacteria (or other microbes) in an environmental gradient, in order to determine the tolerance of the microbial population to varying concentrations of sodium chloride ions, and suggests how the evolutionary response of a microbial population to the selection pressure of the…

Effects of the Ordering of Natural Selection and Population Regulation Mechanisms on Wright-Fisher Models.

Science.gov (United States)

He, Zhangyi; Beaumont, Mark; Yu, Feng

2017-07-05

We explore the effect of different mechanisms of natural selection on the evolution of populations for one- and two-locus systems. We compare the effect of viability and fecundity selection in the context of the Wright-Fisher model with selection under the assumption of multiplicative fitness. We show that these two modes of natural selection correspond to different orderings of the processes of population regulation and natural selection in the Wright-Fisher model. We find that under the Wright-Fisher model these two different orderings can affect the distribution of trajectories of haplotype frequencies evolving with genetic recombination. However, the difference in the distribution of trajectories is only appreciable when the population is in significant linkage disequilibrium. We find that as linkage disequilibrium decays the trajectories for the two different models rapidly become indistinguishable. We discuss the significance of these findings in terms of biological examples of viability and fecundity selection, and speculate that the effect may be significant when factors such as gene migration maintain a degree of linkage disequilibrium. Copyright © 2017 He et al.

Genome-wide Selective Sweeps in Natural Bacterial Populations Revealed by Time-series Metagenomics

Energy Technology Data Exchange (ETDEWEB)

Chan, Leong-Keat; Bendall, Matthew L.; Malfatti, Stephanie; Schwientek, Patrick; Tremblay, Julien; Schackwitz, Wendy; Martin, Joel; Pati, Amrita; Bushnell, Brian; Foster, Brian; Kang, Dongwan; Tringe, Susannah G.; Bertilsson, Stefan; Moran, Mary Ann; Shade, Ashley; Newton, Ryan J.; Stevens, Sarah; McMcahon, Katherine D.; Mamlstrom, Rex R.

2014-05-12

Multiple evolutionary models have been proposed to explain the formation of genetically and ecologically distinct bacterial groups. Time-series metagenomics enables direct observation of evolutionary processes in natural populations, and if applied over a sufficiently long time frame, this approach could capture events such as gene-specific or genome-wide selective sweeps. Direct observations of either process could help resolve how distinct groups form in natural microbial assemblages. Here, from a three-year metagenomic study of a freshwater lake, we explore changes in single nucleotide polymorphism (SNP) frequencies and patterns of gene gain and loss in populations of Chlorobiaceae and Methylophilaceae. SNP analyses revealed substantial genetic heterogeneity within these populations, although the degree of heterogeneity varied considerably among closely related, co-occurring Methylophilaceae populations. SNP allele frequencies, as well as the relative abundance of certain genes, changed dramatically over time in each population. Interestingly, SNP diversity was purged at nearly every genome position in one of the Chlorobiaceae populations over the course of three years, while at the same time multiple genes either swept through or were swept from this population. These patterns were consistent with a genome-wide selective sweep, a process predicted by the ecotype model? of diversification, but not previously observed in natural populations.

Genome-wide Selective Sweeps in Natural Bacterial Populations Revealed by Time-series Metagenomics

Energy Technology Data Exchange (ETDEWEB)

Chan, Leong-Keat; Bendall, Matthew L.; Malfatti, Stephanie; Schwientek, Patrick; Tremblay, Julien; Schackwitz, Wendy; Martin, Joel; Pati, Amrita; Bushnell, Brian; Foster, Brian; Kang, Dongwan; Tringe, Susannah G.; Bertilsson, Stefan; Moran, Mary Ann; Shade, Ashley; Newton, Ryan J.; Stevens, Sarah; McMahon, Katherine D.; Malmstrom, Rex R.

2014-06-18

Multiple evolutionary models have been proposed to explain the formation of genetically and ecologically distinct bacterial groups. Time-series metagenomics enables direct observation of evolutionary processes in natural populations, and if applied over a sufficiently long time frame, this approach could capture events such as gene-specific or genome-wide selective sweeps. Direct observations of either process could help resolve how distinct groups form in natural microbial assemblages. Here, from a three-year metagenomic study of a freshwater lake, we explore changes in single nucleotide polymorphism (SNP) frequencies and patterns of gene gain and loss in populations of Chlorobiaceae and Methylophilaceae. SNP analyses revealed substantial genetic heterogeneity within these populations, although the degree of heterogeneity varied considerably among closely related, co-occurring Methylophilaceae populations. SNP allele frequencies, as well as the relative abundance of certain genes, changed dramatically over time in each population. Interestingly, SNP diversity was purged at nearly every genome position in one of the Chlorobiaceae populations over the course of three years, while at the same time multiple genes either swept through or were swept from this population. These patterns were consistent with a genome-wide selective sweep, a process predicted by the ‘ecotype model’ of diversification, but not previously observed in natural populations.

Host population structure and treatment frequency maintain balancing selection on drug resistance

Science.gov (United States)

Baskerville, Edward B.; Colijn, Caroline; Hanage, William; Fraser, Christophe; Lipsitch, Marc

2017-01-01

It is a truism that antimicrobial drugs select for resistance, but explaining pathogen- and population-specific variation in patterns of resistance remains an open problem. Like other common commensals, Streptococcus pneumoniae has demonstrated persistent coexistence of drug-sensitive and drug-resistant strains. Theoretically, this outcome is unlikely. We modelled the dynamics of competing strains of S. pneumoniae to investigate the impact of transmission dynamics and treatment-induced selective pressures on the probability of stable coexistence. We find that the outcome of competition is extremely sensitive to structure in the host population, although coexistence can arise from age-assortative transmission models with age-varying rates of antibiotic use. Moreover, we find that the selective pressure from antibiotics arises not so much from the rate of antibiotic use per se but from the frequency of treatment: frequent antibiotic therapy disproportionately impacts the fitness of sensitive strains. This same phenomenon explains why serotypes with longer durations of carriage tend to be more resistant. These dynamics may apply to other potentially pathogenic, microbial commensals and highlight how population structure, which is often omitted from models, can have a large impact. PMID:28835542

A genomic portrait of haplotype diversity and signatures of selection in indigenous southern African populations.

Directory of Open Access Journals (Sweden)

Emile R Chimusa

2015-03-01

Full Text Available We report a study of genome-wide, dense SNP (∼ 900K and copy number polymorphism data of indigenous southern Africans. We demonstrate the genetic contribution to southern and eastern African populations, which involved admixture between indigenous San, Niger-Congo-speaking and populations of Eurasian ancestry. This finding illustrates the need to account for stratification in genome-wide association studies, and that admixture mapping would likely be a successful approach in these populations. We developed a strategy to detect the signature of selection prior to and following putative admixture events. Several genomic regions show an unusual excess of Niger-Kordofanian, and unusual deficiency of both San and Eurasian ancestry, which were considered the footprints of selection after population admixture. Several SNPs with strong allele frequency differences were observed predominantly between the admixed indigenous southern African populations, and their ancestral Eurasian populations. Interestingly, many candidate genes, which were identified within the genomic regions showing signals for selection, were associated with southern African-specific high-risk, mostly communicable diseases, such as malaria, influenza, tuberculosis, and human immunodeficiency virus/AIDs. This observation suggests a potentially important role that these genes might have played in adapting to the environment. Additionally, our analyses of haplotype structure, linkage disequilibrium, recombination, copy number variation and genome-wide admixture highlight, and support the unique position of San relative to both African and non-African populations. This study contributes to a better understanding of population ancestry and selection in south-eastern African populations; and the data and results obtained will support research into the genetic contributions to infectious as well as non-communicable diseases in the region.

A genomic portrait of haplotype diversity and signatures of selection in indigenous southern African populations.

Science.gov (United States)

Chimusa, Emile R; Meintjies, Ayton; Tchanga, Milaine; Mulder, Nicola; Seoighe, Cathal; Seioghe, Cathal; Soodyall, Himla; Ramesar, Rajkumar

2015-03-01

We report a study of genome-wide, dense SNP (∼ 900K) and copy number polymorphism data of indigenous southern Africans. We demonstrate the genetic contribution to southern and eastern African populations, which involved admixture between indigenous San, Niger-Congo-speaking and populations of Eurasian ancestry. This finding illustrates the need to account for stratification in genome-wide association studies, and that admixture mapping would likely be a successful approach in these populations. We developed a strategy to detect the signature of selection prior to and following putative admixture events. Several genomic regions show an unusual excess of Niger-Kordofanian, and unusual deficiency of both San and Eurasian ancestry, which were considered the footprints of selection after population admixture. Several SNPs with strong allele frequency differences were observed predominantly between the admixed indigenous southern African populations, and their ancestral Eurasian populations. Interestingly, many candidate genes, which were identified within the genomic regions showing signals for selection, were associated with southern African-specific high-risk, mostly communicable diseases, such as malaria, influenza, tuberculosis, and human immunodeficiency virus/AIDs. This observation suggests a potentially important role that these genes might have played in adapting to the environment. Additionally, our analyses of haplotype structure, linkage disequilibrium, recombination, copy number variation and genome-wide admixture highlight, and support the unique position of San relative to both African and non-African populations. This study contributes to a better understanding of population ancestry and selection in south-eastern African populations; and the data and results obtained will support research into the genetic contributions to infectious as well as non-communicable diseases in the region.

Assessment of plutonium exposures in Rongelap and Utirik populations by fission track analysis of urine

International Nuclear Information System (INIS)

Sun, L.C.; Moorthy, A.R.; Kaplan, E.; Baum, J.W.; Meinhold, C.B.

1994-01-01

A nuclear device, code-named Bravo, detonated at Bikini Atoll at 6:45 a.m. on 1 March 1954, unexpectedly released a large amount of radioactivity. Over 40 years after this incident, the study of its impact on the radiological health and environmental safety of the residents of Rongelap and Utirik Atolls continues. In 1987, researchers at Brookhaven National Laboratory established a fission track analysis (FTA) method for low-level 239 Pu urinalysis. Two years later, a new shipboard protocol was developed for collecting 24-h radiologically clean urine samples. The purpose of this paper is to update information on the FTA method for measuring low-levels of plutonium, and to summarize results on the distribution of 239 Pu in the populations of Rongelap and Utirik between 1981--1991. Plutonium detection levels (99% confidence level) in these samples were 2--3 μBq, which is equivalent to 0.2--0.3 mSv effective dose equivalent (EDE) to age 70 for Marshallese. The latest 1991 FTA data indicate average EDE of 0.62 mSv and 1.6 mSv for the people of Rongelap and Utirik, respectively, which both are the highest values since 1988

Assessment of plutonium exposures in Rongelap and Utirik populations by fission track analysis of urine

International Nuclear Information System (INIS)

Sun, L.C.; Moorthy, A.R.; Kaplan, E.; Baum, J.W.; Meinhold, C.B.

1995-01-01

A nuclear device, code-named Bravo, detonated at Bikini Atoll at 6.45 a.m. on 1 March 1954, unexpectedly released a large amount of radioactivity. Over 40 years after this incident, the study of its impact on the radiological health and environmental safety of the residents of Rongelap and Utirik Atolls continues. In 1987, researchers at Brookhaven National Laboratory established a fission track analysis (FTA) method for low-level 239 Pu urinalysis. Two years later, a new shipboard protocol was developed for collecting 24-h radiologically clean urine samples. The purpose of this paper is to update information on the FTA method for measuring low-levels of plutonium, and to summarize results on the distribution of 239 Pu in the populations of Rongelap and Utirik between 1981-1991. Plutonium detection levels (99% confidence level) in these samples were 2-3 μBq, which is equivalent to 0.2-0.3 mSv effective dose equivalent (EDE) to age 70 for Marshallese. The latest 1991 FTA data indicate average EDE of 0.62 mSv and 1.6 mSv for the people of Rongelap and Utirik, respectively, which both are the highest values since 1988. (author)

Neutral Theory: From Complex Population History to Natural Selection and Sociocultural Phenomena in Human Populations.

Science.gov (United States)

Austerlitz, Frédéric; Heyer, Evelyne

2018-06-01

Here, we present a synthetic view on how Kimura's Neutral theory has helped us gaining insight on the different evolutionary forces that shape human evolution. We put this perspective in the frame of recent emerging challenges: the use of whole genome data for reconstructing population histories, natural selection on complex polygenic traits, and integrating cultural processes in human evolution.

Genome-wide scans between two honeybee populations reveal putative signatures of human-mediated selection.

Science.gov (United States)

Parejo, M; Wragg, D; Henriques, D; Vignal, A; Neuditschko, M

2017-12-01

Human-mediated selection has left signatures in the genomes of many domesticated animals, including the European dark honeybee, Apis mellifera mellifera, which has been selected by apiculturists for centuries. Using whole-genome sequence information, we investigated selection signatures in spatially separated honeybee subpopulations (Switzerland, n = 39 and France, n = 17). Three different test statistics were calculated in windows of 2 kb (fixation index, cross-population extended haplotype homozygosity and cross-population composite likelihood ratio) and combined into a recently developed composite selection score. Applying a stringent false discovery rate of 0.01, we identified six significant selective sweeps distributed across five chromosomes covering eight genes. These genes are associated with multiple molecular and biological functions, including regulation of transcription, receptor binding and signal transduction. Of particular interest is a selection signature on chromosome 1, which corresponds to the WNT4 gene, the family of which is conserved across the animal kingdom with a variety of functions. In Drosophila melanogaster, WNT4 alleles have been associated with differential wing, cross vein and abdominal phenotypes. Defining phenotypic characteristics of different Apis mellifera ssp., which are typically used as selection criteria, include colour and wing venation pattern. This signal is therefore likely to be a good candidate for human mediated-selection arising from different applied breeding practices in the two managed populations. © 2017 The Authors. Animal Genetics published by John Wiley & Sons Ltd on behalf of Stichting International Foundation for Animal Genetics.

Reliability of pedigree-based and genomic evaluations in selected populations

NARCIS (Netherlands)

Gorjanc, G.; Bijma, P.; Hickey, J.M.

2015-01-01

Background: Reliability is an important parameter in breeding. It measures the precision of estimated breeding values (EBV) and, thus, potential response to selection on those EBV. The precision of EBV is commonly measured by relating the prediction error variance (PEV) of EBV to the base population

Algorithms for selecting informative marker panels for population assignment.

Science.gov (United States)

Rosenberg, Noah A

2005-11-01

Given a set of potential source populations, genotypes of an individual of unknown origin at a collection of markers can be used to predict the correct source population of the individual. For improved efficiency, informative markers can be chosen from a larger set of markers to maximize the accuracy of this prediction. However, selecting the loci that are individually most informative does not necessarily produce the optimal panel. Here, using genotypes from eight species--carp, cat, chicken, dog, fly, grayling, human, and maize--this univariate accumulation procedure is compared to new multivariate "greedy" and "maximin" algorithms for choosing marker panels. The procedures generally suggest similar panels, although the greedy method often recommends inclusion of loci that are not chosen by the other algorithms. In seven of the eight species, when applied to five or more markers, all methods achieve at least 94% assignment accuracy on simulated individuals, with one species--dog--producing this level of accuracy with only three markers, and the eighth species--human--requiring approximately 13-16 markers. The new algorithms produce substantial improvements over use of randomly selected markers; where differences among the methods are noticeable, the greedy algorithm leads to slightly higher probabilities of correct assignment. Although none of the approaches necessarily chooses the panel with optimal performance, the algorithms all likely select panels with performance near enough to the maximum that they all are suitable for practical use.

National Coral Reef Monitoring Program: Stratified Random Surveys (StRS) of Coral Demography (Adult and Juvenile Corals) across Rose Atoll from 2016-05-01 to 2016-05-04 (NCEI Accession 0159167)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The data described here result from benthic coral demographic surveys for two life stages (juveniles, adults) across Rose Atoll in 2016. Juvenile colony surveys...

ASM-Triggered Too Observations of Kilohertz Oscillations in Three Atoll Sources

Science.gov (United States)

Kaaret, P.; Swank, Jean (Technical Monitor)

2000-01-01

Three Rossi Timing Explorer (RXTE) observations were carried out for this proposal based on target of opportunity triggers derived from the All-Sky Monitor (ASM) on RXTE. We obtained short observations of 4U1636-536 (15ks) and 4U1735-44 (23ks) and a longer observation of 4U0614+091 (117ks). Our analysis of our observations of the atoll neutron star x-ray binary 4U1735-44 lead to the discovery of a second high frequency quasiperiodic oscillation (QPO) in this source. These results were published in the Astrophysical Journal Letters. The data obtained on the source 4U0614+091 were used in a comprehensive study of this source, which will be published in the Astrophysical Journal. The data from this proposal were particularly critical for that study as they lead to the detection of the highest QPO frequency every found in the x-ray emission from an x-ray binary which will be important in placing limits on the equation of state of nuclear matter.

The value of cows in reference populations for genomic selection of new functional traits

DEFF Research Database (Denmark)

Buch, Line Hjortø; Kargo, Morten; Berg, Peer

2012-01-01

Today, almost all reference populations consist of progeny tested bulls. However, older progeny tested bulls do not have reliable estimated breeding values (EBV) for new traits. Thus, to be able to select for these new traits, it is necessary to build a reference population. We used a deterministic...... of the direct genomic values (DGV) for a new functional trait, regardless of its heritability. For small-scale recording, we compared two scenarios where the reference population consisted of the 2000 cows with phenotypic records or the 30 sires of these cows in the first year with measurements of the new...... to achieve accuracies of the DGV that enable selection for new functional traits recorded on a large scale within 3 years from commencement of recording; and (iv) a higher heritability benefits a reference population of cows more than a reference population of bulls....

Projected atoll shoreline and run-up changes in response to sea-level rise and varying large wave conditions at Wake and Midway Atolls, Northwestern Hawaiian Islands

Science.gov (United States)

Shope, James B.; Storlazzi, Curt; Hoeke, Ron

2017-01-01

Atoll islands are dynamic features that respond to seasonal alterations in wave conditions and sea level. It is unclear how shoreline wave run-up and erosion patterns along these low elevation islands will respond to projected sea-level rise (SLR) and changes in wave climate over the next century, hindering communities' preparation for the future. To elucidate how these processes may respond to climate change, extreme boreal winter and summer wave conditions under future sea-level rise (SLR) and wave climate scenarios were simulated at two atolls, Wake and Midway, using a shallow-water hydrodynamic model. Nearshore wave conditions were used to compute the potential longshore sediment flux along island shorelines via the CERC empirical formula and wave-driven erosion was calculated as the divergence of the longshore drift; run-up and the locations where the run-up exceed the berm elevation were also determined. SLR is projected to predominantly drive future island morphological change and flooding. Seaward shorelines (i.e., ocean fronted shorelines directly facing incident wave energy) were projected to experience greater erosion and flooding with SLR and in hypothetical scenarios where changes to deep water wave directions were altered, as informed by previous climate change forced Pacific wave modeling efforts. These changes caused nearshore waves to become more shore-normal, increasing wave attack along previously protected shorelines. With SLR, leeward shorelines (i.e., an ocean facing shoreline but sheltered from incident wave energy) became more accretive on windward islands and marginally more erosive along leeward islands. These shorelines became more accretionary and subject to more flooding with nearshore waves becoming more shore-normal. Lagoon shorelines demonstrated the greatest SLR-driven increase in erosion and run-up. They exhibited the greatest relative change with increasing wave heights where both erosion and run-up magnitudes increased. Wider

Projected atoll shoreline and run-up changes in response to sea-level rise and varying large wave conditions at Wake and Midway Atolls, Northwestern Hawaiian Islands

Science.gov (United States)

Shope, James B.; Storlazzi, Curt D.; Hoeke, Ron K.

2017-10-01

Atoll islands are dynamic features that respond to seasonal alterations in wave conditions and sea level. It is unclear how shoreline wave run-up and erosion patterns along these low elevation islands will respond to projected sea-level rise (SLR) and changes in wave climate over the next century, hindering communities' preparation for the future. To elucidate how these processes may respond to climate change, extreme boreal winter and summer wave conditions under future sea-level rise (SLR) and wave climate scenarios were simulated at two atolls, Wake and Midway, using a shallow-water hydrodynamic model. Nearshore wave conditions were used to compute the potential longshore sediment flux along island shorelines via the CERC empirical formula and wave-driven erosion was calculated as the divergence of the longshore drift; run-up and the locations where the run-up exceed the berm elevation were also determined. SLR is projected to predominantly drive future island morphological change and flooding. Seaward shorelines (i.e., ocean fronted shorelines directly facing incident wave energy) were projected to experience greater erosion and flooding with SLR and in hypothetical scenarios where changes to deep water wave directions were altered, as informed by previous climate change forced Pacific wave modeling efforts. These changes caused nearshore waves to become more shore-normal, increasing wave attack along previously protected shorelines. With SLR, leeward shorelines (i.e., an ocean facing shoreline but sheltered from incident wave energy) became more accretive on windward islands and marginally more erosive along leeward islands. These shorelines became more accretionary and subject to more flooding with nearshore waves becoming more shore-normal. Lagoon shorelines demonstrated the greatest SLR-driven increase in erosion and run-up. They exhibited the greatest relative change with increasing wave heights where both erosion and run-up magnitudes increased. Wider

Drivers of abundance and spatial distribution of reef-associated sharks in an isolated atoll reef system.

Directory of Open Access Journals (Sweden)

David M Tickler

Full Text Available We investigated drivers of reef shark demography across a large and isolated marine protected area, the British Indian Ocean Territory Marine Reserve, using stereo baited remote underwater video systems. We modelled shark abundance against biotic and abiotic variables at 35 sites across the reserve and found that the biomass of low trophic order fish (specifically planktivores had the greatest effect on shark abundance, although models also included habitat variables (depth, coral cover and site type. There was significant variation in the composition of the shark assemblage at different atolls within the reserve. In particular, the deepest habitat sampled (a seamount at 70-80m visited for the first time in this study recorded large numbers of scalloped hammerhead sharks (Sphyrna lewini not observed elsewhere. Size structure of the most abundant and common species, grey reef sharks (Carcharhinus amblyrhynchos, varied with location. Individuals at an isolated bank were 30% smaller than those at the main atolls, with size structure significantly biased towards the size range for young of year (YOY. The 18 individuals judged to be YOY represented the offspring of between four and six females, so, whilst inconclusive, these data suggest the possible use of a common pupping site by grey reef sharks. The importance of low trophic order fish biomass (i.e. potential prey in predicting spatial variation in shark abundance is consistent with other studies both in marine and terrestrial systems which suggest that prey availability may be a more important predictor of predator distribution than habitat suitability. This result supports the need for ecosystem level rather than species-specific conservation measures to support shark recovery. The observed spatial partitioning amongst sites for species and life-stages also implies the need to include a diversity of habitats and reef types within a protected area for adequate protection of reef-associated shark

The genealogy of sequences containing multiple sites subject to strong selection in a subdivided population.

Science.gov (United States)

Nordborg, Magnus; Innan, Hideki

2003-03-01

A stochastic model for the genealogy of a sample of recombining sequences containing one or more sites subject to selection in a subdivided population is described. Selection is incorporated by dividing the population into allelic classes and then conditioning on the past sizes of these classes. The past allele frequencies at the selected sites are thus treated as parameters rather than as random variables. The purpose of the model is not to investigate the dynamics of selection, but to investigate effects of linkage to the selected sites on the genealogy of the surrounding chromosomal region. This approach is useful for modeling strong selection, when it is natural to parameterize the past allele frequencies at the selected sites. Several models of strong balancing selection are used as examples, and the effects on the pattern of neutral polymorphism in the chromosomal region are discussed. We focus in particular on the statistical power to detect balancing selection when it is present.

Dose assessment in the Marshall Islands

International Nuclear Information System (INIS)

Robison, William L.

1978-01-01

Bikini Atoll and Enewetak Atoll in the Marshall Islands were the sites of major U.S. weapons testing from 1948 through 1958. Both the Bikini and Knewetak people have expressed a desire to return to their native Atolls. In 1968 clean-up and resettlement of Bikini was begun. In 1972-73 the initial survey of Enewetak Atoll was conducted and clean-up began in 1977. Surveys have been conducted at both Atolls to establish the concentrations of radionuclides in the biota and to determine the external exposure rates. Subsequent to the surveys dose assessments have been made to determine the potential dose to returning (100) populations at both Atolls. This talk will include discussions of the relative importance of the critical exposure pathways (i.e., external exposure, inhalation, marine, terrestrial and drinking water), the predominant radionuclides contributing to the predicted doses for each pathway, the doses predicted for alternate living patterns, comparison to Federal Guidelines, the comparison between Atolls, some of the social problems created by adherence to Federal Guidelines and the follow-up research identified and initiated to help refine the dose assessments and better predict the long term use of the Atolls (86). (author)

Evidence for natural selection at the melanocortin-3 receptor gene in European and African populations.

Science.gov (United States)

Yoshiuchi, Issei

2016-08-01

Obesity is increasing steadily in worldwide prevalence and is known to cause serious health problems in association with type 2 diabetes mellitus (T2DM), including hypertension, stroke, and cardiovascular diseases. According to the thrifty gene hypothesis, the natural selection of obesity-related genes is important during feast and famine because they control body weight and fat levels. Past human adaptations to environmental changes in food supply, lifestyle, and geography may have influenced the selection of genes associated with the metabolism of glucose, lipids, and energy. The melanocortin-3 receptor gene (MC3R) is associated with obesity, with MC3R-deficient mice showing increased fat mass. MC3R variations are also linked with childhood obesity and insulin resistance. Here, we aimed to uncover evidence of selection at MC3R. We performed a three-step method to detect selection at MC3R using HapMap population data. We used Wright's F statistics as a measure of population differentiation, the long-range haplotype test to identify extended haplotypes, and the integrated haplotype score (iHS) to detect selection at MC3R. We observed high population differentiation between European and African populations at two MC3R childhood obesity- and insulin resistance-associated single-nucleotide polymorphisms (rs3746619 and rs3827103) using Wright's F statistics. The iHS revealed evidence of natural selection at MC3R. These findings provide evidence for natural selection at MC3R. Further investigation is warranted into adaptive evolution at T2DM- and obesity-associated genes.

Testing for a genetic response to sexual selection in a wild Drosophila population.

Science.gov (United States)

Gosden, T P; Thomson, J R; Blows, M W; Schaul, A; Chenoweth, S F

2016-06-01

In accordance with the consensus that sexual selection is responsible for the rapid evolution of display traits on macroevolutionary scales, microevolutionary studies suggest sexual selection is a widespread and often strong form of directional selection in nature. However, empirical evidence for the contemporary evolution of sexually selected traits via sexual rather than natural selection remains weak. In this study, we used a novel application of quantitative genetic breeding designs to test for a genetic response to sexual selection on eight chemical display traits from a field population of the fly, Drosophila serrata. Using our quantitative genetic approach, we were able to detect a genetically based difference in means between groups of males descended from fathers who had either successfully sired offspring or were randomly collected from the same wild population for one of these display traits, the diene (Z,Z)-5,9-C27 : 2 . Our experimental results, in combination with previous laboratory studies on this system, suggest that both natural and sexual selection may be influencing the evolutionary trajectories of these traits in nature, limiting the capacity for a contemporary evolutionary response. © 2016 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2016 European Society For Evolutionary Biology.

Comparisons of Growth and Survival Performance Among Selected Families and Wild Populations of Fenneropenaeus chinensis

Science.gov (United States)

Luo, Kun; Kong, Jie; Meng, Xianhong; Luan, Sheng; Cao, Baoxiang; Chen, Baolong

2018-04-01

In this study, families of selected population for growth (SP_BWT), selected population for white spot syndrome virus (WSSV) resistance (SP_RW), Bohai wild population (WP_BH) and Huanghai wild population (WP_HH) of F. chinensis were constructed through artificial insemination and with the standardized procedure of larvae rearing. Growth and survival performance were studied among four populations after a 70 days common test. The results showed that the maximum least square mean of body weight was 17.50 g in SP_BWT while the minimum was 13.03 g in WP_HH. Compared with WP_BH, body weight of SP_BWT increased by 23.41% ( P 0.05). Body weights of SP_BWT and SP_RW were significantly higher than that of WP_HH, which increased by 34.31% ( P populations was 0.19, 0.18, 0.17 and 0.16 g d-1, respectively. Coefficient of variation of body weight among four populations was high, which ranged from 32.67% to 35.25%. Such a range showed that there was the potentiality for further improvement in selected populations. Coefficient of variation of survival rate among four populations was low, varying between 3.20% and 5.90%. The difference of survival was highly significant ( P populations ( P growth performances were also observed among different families in each population. The body weight of 798F family was the highest. The absolute growth rate (AGR) was 0.25 g d-1, 150% higher than that of the lowest one, 0.1 g d-1 in 807F family. Survival rate of families among four populations was different. The highest was 94.74%, and the lowest was 71.88%.

Study on Quality Improvement Effect and Separate Character of Soybean Male Sterile (MS1) Recurrent Selection Population

Institute of Scientific and Technical Information of China (English)

ZHAO Shuang-jin; ZHANG Meng-chen; JIANG Chun-zhi; YANG Chun-yan; LIU Bing-qiang; CUI Jue

2007-01-01

To solve the problem that soybean has narrow genetic base, we constructed a series of male sterile recurrent selection populations, and studied the effects of quality improvement and practical value. An LD-base population, which fits to our ecology type was constructed by 6 years' gene enrichment through the introduction of new genes from 23 local varieties and recurrent selection. The LD-base populations were then improved by making crosses with high protein and high oil genotypes. As a result we obtained a high protein sub-population (db) and a high oil sub-population (gy). For the db sub-population, the protein content is 1.18% higher than the base population, 22.38% of the individuals contain 45% or more of protein, which is 10.99% higher than the base population. For the gy sub-population, oil content is 0.24% higher than the base population. Individuals with oil content of 20% or more are 11.05% higher than the base population. The quantitative characters such as flowering date, mature date, pod habit, and hilum color, etc., all showed wide range of separation, and the segregation ratio approached balance. The c.v. of branch number of ms1 recurrent population (72.8%) is higher than general cross-population (57.3%), and the c.v. of 100 seed weight of ms1 (18.1%) is higher than general cross population (16.5%), the coefficient of variation of plant height, pods per plant, and seeds per pod were not significantly different. It was demonstrated in this paper that the quality character of ms1 male sterile recurrent selection population was improved by adding new genes. And the segregation of other characters widened, making the populations suitable for the objective of soybean breeding. In this paper, we also discussed the breeding method, key technology, and selection effect of soybean ms1 population.

Signatures of natural selection at the FTO (fat mass and obesity associated locus in human populations.

Directory of Open Access Journals (Sweden)

Xuanshi Liu

Full Text Available Polymorphisms in the first intron of FTO have been robustly replicated for associations with obesity. In the Sorbs, a Slavic population resident in Germany, the strongest effect on body mass index (BMI was found for a variant in the third intron of FTO (rs17818902. Since this may indicate population specific effects of FTO variants, we initiated studies testing FTO for signatures of selection in vertebrate species and human populations.First, we analyzed the coding region of 35 vertebrate FTO orthologs with Phylogenetic Analysis by Maximum Likelihood (PAML, ω = dN/dS to screen for signatures of selection among species. Second, we investigated human population (Europeans/CEU, Yoruba/YRI, Chinese/CHB, Japanese/JPT, Sorbs SNP data for footprints of selection using DnaSP version 4.5 and the Haplotter/PhaseII. Finally, using ConSite we compared transcription factor (TF binding sites at sequences harbouring FTO SNPs in intron three.PAML analyses revealed strong conservation in coding region of FTO (ω<1. Sliding-window results from population genetic analyses provided highly significant (p<0.001 signatures for balancing selection specifically in the third intron (e.g. Tajima's D in Sorbs = 2.77. We observed several alterations in TF binding sites, e.g. TCF3 binding site introduced by the rs17818902 minor allele.Population genetic analysis revealed signatures of balancing selection at the FTO locus with a prominent signal in intron three, a genomic region with strong association with BMI in the Sorbs. Our data support the hypothesis that genes associated with obesity may have been under evolutionary selective pressure.

Code-specific learning rules improve action selection by populations of spiking neurons.

Science.gov (United States)

Friedrich, Johannes; Urbanczik, Robert; Senn, Walter

2014-08-01

Population coding is widely regarded as a key mechanism for achieving reliable behavioral decisions. We previously introduced reinforcement learning for population-based decision making by spiking neurons. Here we generalize population reinforcement learning to spike-based plasticity rules that take account of the postsynaptic neural code. We consider spike/no-spike, spike count and spike latency codes. The multi-valued and continuous-valued features in the postsynaptic code allow for a generalization of binary decision making to multi-valued decision making and continuous-valued action selection. We show that code-specific learning rules speed up learning both for the discrete classification and the continuous regression tasks. The suggested learning rules also speed up with increasing population size as opposed to standard reinforcement learning rules. Continuous action selection is further shown to explain realistic learning speeds in the Morris water maze. Finally, we introduce the concept of action perturbation as opposed to the classical weight- or node-perturbation as an exploration mechanism underlying reinforcement learning. Exploration in the action space greatly increases the speed of learning as compared to exploration in the neuron or weight space.

Phenotypic selection on leaf water use efficiency and related ecophysiological traits for natural populations of desert sunflowers.

Science.gov (United States)

Donovan, Lisa A; Dudley, Susan A; Rosenthal, David M; Ludwig, Fulco

2007-05-01

Plant water-use efficiency (WUE) is expected to affect plant fitness and thus be under natural selection in arid habitats. Although many natural population studies have assessed plant WUE, only a few related WUE to fitness. The further determination of whether selection on WUE is direct or indirect through functionally related traits has yielded no consistent results. For natural populations of two desert annual sunflowers, Helianthus anomalus and H. deserticola, we used phenotypic selection analysis with vegetative biomass as the proxy for fitness to test (1) whether there was direct and indirect selection on WUE (carbon isotope ratio) and related traits (leaf N, area, succulence) and (2) whether direct selection was consistent with hypothesized drought/dehydration escape and avoidance strategies. There was direct selection for lower WUE in mesic and dry H. anomalus populations, consistent with dehydration escape, even though it is the longer lived of the two species. For mesic H. anomalus, direct selection favored lower WUE and higher N, suggesting that plants may be "wasting water" to increase N delivery via the transpiration stream. For the shorter lived H. deserticola in the direr habitat, there was indirect selection for lower WUE, inconsistent with drought escape. There was also direct selection for higher leaf N, succulence and leaf size. There was no direct selection for higher WUE consistent with dehydration avoidance in either species. Thus, in these natural populations of two desert dune species higher fitness was associated with some combination direct and indirect selection for lower WUE, higher leaf N and larger leaf size. Our understanding of the adaptive value of plant ecophysiological traits will benefit from further consideration of related traits such as leaf nitrogen and more tests in natural populations.

Topology of evolving, mutagenized viral populations: quasispecies expansion, compression, and operation of negative selection.

Science.gov (United States)

Ojosnegros, Samuel; Agudo, Rubén; Sierra, Macarena; Briones, Carlos; Sierra, Saleta; González-López, Claudia; Domingo, Esteban; Cristina, Juan

2008-07-17

The molecular events and evolutionary forces underlying lethal mutagenesis of virus (or virus extinction through an excess of mutations) are not well understood. Here we apply for the first time phylogenetic methods and Partition Analysis of Quasispecies (PAQ) to monitor genetic distances and intra-population structures of mutant spectra of foot-and-mouth disease virus (FMDV) quasispecies subjected to mutagenesis by base and nucleoside analogues. Phylogenetic and PAQ analyses have revealed a highly dynamic variation of intrapopulation diversity of FMDV quasispecies. The population diversity first suffers striking expansions in the presence of mutagens and then compressions either when the presence of the mutagenic analogue was discontinued or when a mutation that decreased sensitivity to a mutagen was selected. The pattern of mutations found in the populations was in agreement with the behavior of the corresponding nucleotide analogues with FMDV in vitro. Mutations accumulated at preferred genomic sites, and dn/ds ratios indicate the operation of negative (or purifying) selection in populations subjected to mutagenesis. No evidence of unusually elevated genetic distances has been obtained for FMDV populations approaching extinction. Phylogenetic and PAQ analysis provide adequate procedures to describe the evolution of viral sequences subjected to lethal mutagenesis. These methods define the changes of intra-population structure more precisely than mutation frequencies and Shannon entropies. PAQ is very sensitive to variations of intrapopulation genetic distances. Strong negative (or purifying) selection operates in FMDV populations subjected to enhanced mutagenesis. The quantifications provide evidence that extinction does not imply unusual increases of intrapopulation complexity, in support of the lethal defection model of virus extinction.

Reproductive habitat selection in alien and native populations of the genus Discoglossus

Science.gov (United States)

Escoriza, Daniel; Boix, Dani

2014-08-01

The existence of suitable breeding habitats is an important factor explaining the regional presence of an anuran species. This study examined patterns of habitat selection in populations of three species of the genus Discoglossus: Discoglossusgalganoi (south-western Iberian Peninsula), Discoglossusscovazzi (Morocco) and Discoglossuspictus (three different areas were included in the study: Sicily, Tunisia and north-eastern Iberian Peninsula). The populations of D. pictus on the Iberian Peninsula are allochthonous, and analysis of these patterns may provide insights into the processes that regulate the invasion phase. The hypotheses tested were: (i) congeneric species show the same patterns of habitat selection, and alien species have been established following these patterns; (ii) there are differences in species associations between assemblages structured deterministically and by chance, i.e. native versus invaded assemblages. The larval habitats of three species of this genus were characterized by measuring physical and chemical parameters of the water bodies. We examined the covariation between the presence of Discoglossus species and the species richness of sympatric anurans, and investigated a possible relationship between morphological similarity (as a proxy of functional group) and overlap in habitat use. The results showed that congeneric species are morphologically conservative and also select very similar types of aquatic habitat. The alien population and other sympatric species showed a high degree of overlap in habitat use, which was greater than that observed in the native assemblage with a similar functional richness. Species associations were not structured on the basis of morphological similarity in any of the assemblages. Among native populations, the presence of Discoglossus was either negatively correlated or not significantly correlated with species richness. Only the alien population showed a positive correlation between its presence and species

Chemical variation in a dominant tree species: population divergence, selection and genetic stability across environments.

Directory of Open Access Journals (Sweden)

Julianne M O'Reilly-Wapstra

Full Text Available Understanding among and within population genetic variation of ecologically important plant traits provides insight into the potential evolutionary processes affecting those traits. The strength and consistency of selection driving variability in traits would be affected by plasticity in differences among genotypes across environments (G×E. We investigated population divergence, selection and environmental plasticity of foliar plant secondary metabolites (PSMs in a dominant tree species, Eucalyptus globulus. Using two common garden trials we examined variation in PSMs at multiple genetic scales; among 12 populations covering the full geographic range of the species and among up to 60 families within populations. Significant genetic variation in the expression of many PSMs resides both among and within populations of E. globulus with moderate (e.g., sideroxylonal A h(2op = 0.24 to high (e.g., macrocarpal G h(2op = 0.48 narrow sense heritabilities and high coefficients of additive genetic variation estimated for some compounds. A comparison of Qst and Fst estimates suggest that variability in some of these traits may be due to selection. Importantly, there was no genetic by environment interaction in the expression of any of the quantitative chemical traits despite often significant site effects. These results provide evidence that natural selection has contributed to population divergence in PSMs in E. globulus, and identifies the formylated phloroglucinol compounds (particularly sideroxylonal and a dominant oil, 1,8-cineole, as candidates for traits whose genetic architecture has been shaped by divergent selection. Additionally, as the genetic differences in these PSMs that influence community phenotypes is stable across environments, the role of plant genotype in structuring communities is strengthened and these genotypic differences may be relatively stable under global environmental changes.

Identifying signatures of natural selection in Tibetan and Andean populations using dense genome scan data.

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Abigail Bigham

2010-09-01

Full Text Available High-altitude hypoxia (reduced inspired oxygen tension due to decreased barometric pressure exerts severe physiological stress on the human body. Two high-altitude regions where humans have lived for millennia are the Andean Altiplano and the Tibetan Plateau. Populations living in these regions exhibit unique circulatory, respiratory, and hematological adaptations to life at high altitude. Although these responses have been well characterized physiologically, their underlying genetic basis remains unknown. We performed a genome scan to identify genes showing evidence of adaptation to hypoxia. We looked across each chromosome to identify genomic regions with previously unknown function with respect to altitude phenotypes. In addition, groups of genes functioning in oxygen metabolism and sensing were examined to test the hypothesis that particular pathways have been involved in genetic adaptation to altitude. Applying four population genetic statistics commonly used for detecting signatures of natural selection, we identified selection-nominated candidate genes and gene regions in these two populations (Andeans and Tibetans separately. The Tibetan and Andean patterns of genetic adaptation are largely distinct from one another, with both populations showing evidence of positive natural selection in different genes or gene regions. Interestingly, one gene previously known to be important in cellular oxygen sensing, EGLN1 (also known as PHD2, shows evidence of positive selection in both Tibetans and Andeans. However, the pattern of variation for this gene differs between the two populations. Our results indicate that several key HIF-regulatory and targeted genes are responsible for adaptation to high altitude in Andeans and Tibetans, and several different chromosomal regions are implicated in the putative response to selection. These data suggest a genetic role in high-altitude adaption and provide a basis for future genotype/phenotype association

A comparison of two methods for prediction of response and rates of inbreeding in selected populations with the results obtained in two selection experiments

Directory of Open Access Journals (Sweden)

Verrier Etienne

2005-05-01

Full Text Available Abstract Selection programmes are mainly concerned with increasing genetic gain. However, short-term progress should not be obtained at the expense of the within-population genetic variability. Different prediction models for the evolution within a small population of the genetic mean of a selected trait, its genetic variance and its inbreeding have been developed but have mainly been validated through Monte Carlo simulation studies. The purpose of this study was to compare theoretical predictions to experimental results. Two deterministic methods were considered, both grounded on a polygenic additive model. Differences between theoretical predictions and experimental results arise from differences between the true and the assumed genetic model, and from mathematical simplifications applied in the prediction methods. Two sets of experimental lines of chickens were used in this study: the Dutch lines undergoing true truncation mass selection, the other lines (French undergoing mass selection with a restriction on the representation of the different families. This study confirmed, on an experimental basis, that modelling is an efficient approach to make useful predictions of the evolution of selected populations although the basic assumptions considered in the models (polygenic additive model, normality of the distribution, base population at the equilibrium, etc. are not met in reality. The two deterministic methods compared yielded results that were close to those observed in real data, especially when the selection scheme followed the rules of strict mass selection: for instance, both predictions overestimated the genetic gain in the French experiment, whereas both predictions were close to the observed values in the Dutch experiment.

Subset selection from Type-I and Type-II generalized logistic populations

NARCIS (Netherlands)

Laan, van der M.J.; Laan, van der P.

1996-01-01

We give an introduction to the logistic and generalized logistic distributions. We obtain exact results for the probability of correct selection from Type-I and Type-II generalized logistic populations which only differ in their location parameter. Some open problems are formulated.

Prevalence of Spondylolysis and Its Relationship with Low Back Pain in Selected Population

OpenAIRE

Ko, Sang-Bong; Lee, Sang-Wook

2011-01-01

Background To determine the prevalence of spondylolysis in a selected population and evaluate the association of spondylolysis with low back pain (LBP). Spondylolysis is widespread in the general population but the prevalence of spondylolysis and its relationship with LBP in the Korean population is controversial. Methods A sample of 855 participants (age, 20 to 86 years) from our medical center who underwent multidetector computed tomography (CT) imaging to assess abdominal and urological le...

Uncertainty and variability in updated estimates of potential dose and risk at a US Nuclear Test Site - Bikini Atoll

International Nuclear Information System (INIS)

Bogen, K.T.; Conrado, C.L.; Robison, W.L.

1997-01-01

Uncertainty and interindividual variability were assessed in estimated doses for a rehabilitation scenario for Bikini Island at Bikini Atoll, in which the top 40 cm of soil would be removed in the housing and village area, and the rest of the island would be treated with potassium fertilizer, prior to an assumed resettlement date of 1999. Doses were estimated for ingested 137 Cs and 90 Sr, external gamma-exposure, and inhalation+ingestion of 241 Am + 239+240 Pu. Two dietary scenarios were considered: imported foods are available (IA); imported foods are unavailable with only local foods consumed (IUA). After ∼5 y of Bikini residence under either IA or IUA assumptions, upper and lower 95% confidence limits on interindividual variability in calculated dose were estimated to lie within a ∼threefold factor of its in population-average value; upper and lower 95% confidence limits on uncertainty in calculated dose were estimated to lie within a ∼twofold factor of its expected value. For reference, the expected values of population-average dose at age 70 y were estimated to be 16 and 52 mSv under IA and IUA dietary assumptions, respectively. Assuming that 200 Bikini resettlers would be exposed to local foods (under both IA and IUA assumptions), the maximum 1-y dose received by any Bikini resident is most likely to be approximately 2 and 8 mSv under the IA and IUA assumptions, respectively. Under the most likely dietary scenario, involving access to imported foods, this analysis indicates that it is most likely that no additional cancer fatalities (above those normally expected) would arise from the increased radiation exposures considered. 33 refs., 4 figs., 4 tabs

Selection for life-history traits to maximize population growth in an invasive marine species

DEFF Research Database (Denmark)

Jaspers, Cornelia; Marty, Lise; Kiørboe, Thomas

2018-01-01

Species establishing outside their natural range, negatively impacting local ecosystems, are of increasing global concern. They often display life-history features characteristic for r-selected populations with fast growth and high reproduction rates to achieve positive population growth rates (r...

Comparing the predictive abilities of phenotypic and marker-assisted selection methods in a biparental lettuce population

Science.gov (United States)

Breeding and selection for the traits with polygenic inheritance is a challenging task that can be done by phenotypic selection, by marker-assisted selection or by genome wide selection. We tested predictive ability of four selection models in a biparental population genotyped with 95 SNP markers an...

Challenges and Opportunities for Sustainable Tourism Development in Ulithi Atoll

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Anna Ongaro

2016-07-01

Full Text Available This article aims to analyze the tourism potential of Ulithi Atoll, in the Federated States of Micronesia. It identifies possibilities for sustainable tourism development, while taking into account the major issues that threaten the environment, the cultural integrity and the future of the local community. Through a review of existing research and an assessment of the web presence, the study develops a diagnosis of the current situation of the tourism sector in the destination. The tourism potential of Ulithi mainly relies on its beautiful physical environment and authentic cultural heritage, but it is still largely untapped due to limited development. Tourism represents a strategic tool for the economic growth and empowerment of Ulithi community. Presently, however, the atoll’s biggest problem is the recovery from the recent disastrous Typhoon Maysak. Other pressing challenges are climate change and the erosion of traditional knowledge. The study identifies ecotourism and voluntourism as key niche market opportunities for the destination. Encouraging greater participation among the stakeholders and a concrete commitment to sustainability within the strategic plans are some of the recommendations that aim to build the tourism industry in a way that supports the local culture, the natural resources and the way of life.

Measuring selection for genes that promote long life in a historical human population.

Science.gov (United States)

Moorad, Jacob A; Walling, Craig A

2017-11-01

The unusually long lifespans of humans and the persistence of post-reproductive lifespans in women represent evolutionary puzzles because natural selection cannot directly favour continued living in post-menopausal women or elderly men. Suggested sources of indirect selection require genetic correlations between fitness and survival or reproduction at younger ages, reproduction in the opposite sex, or late-life contributions to offspring or grandoffspring fitness. Here we apply quantitative genetic analyses to data from a historical human population to explicitly test these evolutionary genetic hypotheses. Total genetic selection increased the male post-50 lifespans by 0.138 years per generation; 94% of this arose from indirect selection acting to favour early-life fitness in both sexes. These results argue strongly against life-history models of ageing that depend on trade-offs between reproduction and late-life survival. No source of indirect selection for female post-50 lifespan was detected, deepening the mystery of why female post-reproductive survival persists. This result is probably due to recent changes in the genetic architecture of female lifespan, and it highlights the need for similar quantitative genetic analyses of human populations at other points along demographic transitions.

Semiparametric efficient and robust estimation of an unknown symmetric population under arbitrary sample selection bias

KAUST Repository

Ma, Yanyuan

2013-09-01

We propose semiparametric methods to estimate the center and shape of a symmetric population when a representative sample of the population is unavailable due to selection bias. We allow an arbitrary sample selection mechanism determined by the data collection procedure, and we do not impose any parametric form on the population distribution. Under this general framework, we construct a family of consistent estimators of the center that is robust to population model misspecification, and we identify the efficient member that reaches the minimum possible estimation variance. The asymptotic properties and finite sample performance of the estimation and inference procedures are illustrated through theoretical analysis and simulations. A data example is also provided to illustrate the usefulness of the methods in practice. © 2013 American Statistical Association.

Topology of evolving, mutagenized viral populations: quasispecies expansion, compression, and operation of negative selection

Directory of Open Access Journals (Sweden)

Sierra Saleta

2008-07-01

Full Text Available Abstract Background The molecular events and evolutionary forces underlying lethal mutagenesis of virus (or virus extinction through an excess of mutations are not well understood. Here we apply for the first time phylogenetic methods and Partition Analysis of Quasispecies (PAQ to monitor genetic distances and intra-population structures of mutant spectra of foot-and-mouth disease virus (FMDV quasispecies subjected to mutagenesis by base and nucleoside analogues. Results Phylogenetic and PAQ analyses have revealed a highly dynamic variation of intrapopulation diversity of FMDV quasispecies. The population diversity first suffers striking expansions in the presence of mutagens and then compressions either when the presence of the mutagenic analogue was discontinued or when a mutation that decreased sensitivity to a mutagen was selected. The pattern of mutations found in the populations was in agreement with the behavior of the corresponding nucleotide analogues with FMDV in vitro. Mutations accumulated at preferred genomic sites, and dn/ds ratios indicate the operation of negative (or purifying selection in populations subjected to mutagenesis. No evidence of unusually elevated genetic distances has been obtained for FMDV populations approaching extinction. Conclusion Phylogenetic and PAQ analysis provide adequate procedures to describe the evolution of viral sequences subjected to lethal mutagenesis. These methods define the changes of intra-population structure more precisely than mutation frequencies and Shannon entropies. PAQ is very sensitive to variations of intrapopulation genetic distances. Strong negative (or purifying selection operates in FMDV populations subjected to enhanced mutagenesis. The quantifications provide evidence that extinction does not imply unusual increases of intrapopulation complexity, in support of the lethal defection model of virus extinction.

Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures.

Science.gov (United States)

Bastiaansen, John W M; Coster, Albart; Calus, Mario P L; van Arendonk, Johan A M; Bovenhuis, Henk

2012-01-24

Genomic selection has become an important tool in the genetic improvement of animals and plants. The objective of this study was to investigate the impacts of breeding value estimation method, reference population structure, and trait genetic architecture, on long-term response to genomic selection without updating marker effects. Three methods were used to estimate genomic breeding values: a BLUP method with relationships estimated from genome-wide markers (GBLUP), a Bayesian method, and a partial least squares regression method (PLSR). A shallow (individuals from one generation) or deep reference population (individuals from five generations) was used with each method. The effects of the different selection approaches were compared under four different genetic architectures for the trait under selection. Selection was based on one of the three genomic breeding values, on pedigree BLUP breeding values, or performed at random. Selection continued for ten generations. Differences in long-term selection response were small. For a genetic architecture with a very small number of three to four quantitative trait loci (QTL), the Bayesian method achieved a response that was 0.05 to 0.1 genetic standard deviation higher than other methods in generation 10. For genetic architectures with approximately 30 to 300 QTL, PLSR (shallow reference) or GBLUP (deep reference) had an average advantage of 0.2 genetic standard deviation over the Bayesian method in generation 10. GBLUP resulted in 0.6% and 0.9% less inbreeding than PLSR and BM and on average a one third smaller reduction of genetic variance. Responses in early generations were greater with the shallow reference population while long-term response was not affected by reference population structure. The ranking of estimation methods was different with than without selection. Under selection, applying GBLUP led to lower inbreeding and a smaller reduction of genetic variance while a similar response to selection was

Certified reference materials for radionuclides in Bikini Atoll sediment (IAEA-410) and Pacific Ocean sediment (IAEA-412)

DEFF Research Database (Denmark)

Pham, M. K.; van Beek, P.; Carvalho, F. P.

2016-01-01

The preparation and characterization of certified reference materials (CRMs) for radionuclide content in sediments collected offshore of Bikini Atoll (IAEA-410) and in the open northwest Pacific Ocean (IAEA-412) are described and the results of the certification process are presented. The certified...... radionuclides include: 40K, 210Pb (210Po), 226Ra, 228Ra, 228Th, 232Th, 234U, 238U, 239Pu, 239+240Pu and 241Am for IAEA-410 and 40K, 137Cs, 210Pb (210Po), 226Ra, 228Ra, 228Th, 232Th, 235U, 238U, 239Pu, 240Pu and 239+240Pu for IAEA-412. The CRMs can be used for quality assurance and quality control purposes...

Population avoidance in aimpoint selection

International Nuclear Information System (INIS)

Andre, C.G.

1978-01-01

In most past studies of the effectiveness of tactical nuclear weapons vs the amount of collateral damage produced (civilian casualties), civilians have been congregated into idealized shaped towns and cities, and criteria for city avoidance were usually formulated in terms relating to a town's population. This treatment was sufficient in those studies where weapon yields were so large that great numbers of civilians were almost always placed at risk. As further studies developed, demonstrating that real progress could be made in reducing the numbers of civilians potentially placed at risk in tactical nuclear warfare situations, the inadequacies of the present treatment became obvious. The need existed for a more detailed description of the distribution of civilians. The method described determines the number of civilians at risk for a weapon under consideration being detonated at a given point and displays a symbol relating to the numbers at risk on a map or a transparency that overlays a 1:50,000 map of the region. Thus, a weapons planner making the selection of aimpoints for inflicting the necessary military damage required has the means to reduce potential civilian casualties by properly choosing the weapon and aimpoints

Prevalence of spondylolysis and its relationship with low back pain in selected population.

Science.gov (United States)

Ko, Sang-Bong; Lee, Sang-Wook

2011-03-01

To determine the prevalence of spondylolysis in a selected population and evaluate the association of spondylolysis with low back pain (LBP). Spondylolysis is widespread in the general population but the prevalence of spondylolysis and its relationship with LBP in the Korean population is controversial. A sample of 855 participants (age, 20 to 86 years) from our medical center who underwent multidetector computed tomography (CT) imaging to assess abdominal and urological lesions were enrolled in this study. The occurrence of LBP requiring medication in the preceding 12 months was evaluated using a self-report questionnaire (a modified Nordic Low Back Pain Questionnaire). The presence of spondylolysis was characterized by CT imaging. Multiple logistic regression models were used to examine the association between spondylolysis and LBP, while adjusting for gender and age. Seventy-eight study subjects (9%) demonstrated spondylolysis on CT imaging. There was no significant difference between the age groups (p = 0.177). The p-value of gender was 0.033 but this was not significant due to the selected population bias. Three hundred eleven study subjects (36%) had back pain. There was a significant difference between gender (p = 0.001). No significant association was identified between spondylolysis and the occurrence of LBP. The prevalence of LBP was 36.37% and the prevalence of lumbar spondylolysis in a selected population, who visited hospital for abdominal or urological lesions except LBP, was 9.12% based on CT imaging. Males demonstrated a similar presence of LBP to females but a significantly higher incidence of spondylolysis (p = 0.033). The prevalence of spondylolysis was not associated with the presence of LBP and age in adulthood.

Ecological dynamics of age selective harvesting of fish population: Maximum sustainable yield and its control strategy

International Nuclear Information System (INIS)

Jana, Debaldev; Agrawal, Rashmi; Upadhyay, Ranjit Kumar; Samanta, G.P.

2016-01-01

Highlights: • Age-selective harvesting of prey and predator are considered by multi-delayed prey-predator system. • System experiences stable coexistence to oscillatory mode and vice versa via Hopf-bifurcation depending upon the parametric restrictions. • MSY, bionomic equilibrium and optimal harvesting policy are also depending upon the age-selection of prey and predator. • All the analytic results are delay dependent. • Numerical examples support the analytical findings. - Abstract: Life history of ecological resource management and empirical studies are increasingly documenting the impact of selective harvesting process on the evolutionary stable strategy of both aquatic and terrestrial ecosystems. In the present study, the interaction between population and their independent and combined selective harvesting are framed by a multi-delayed prey-predator system. Depending upon the age selection strategy, system experiences stable coexistence to oscillatory mode and vice versa via Hopf-bifurcation. Economic evolution of the system which is mainly featured by maximum sustainable yield (MSY), bionomic equilibrium and optimal harvesting vary largely with the commensurate age selections of both population because equilibrium population abundance becomes age-selection dependent. Our study indicates that balance between harvesting delays and harvesting intensities should be maintained for better ecosystem management. Numerical examples support the analytical findings.

Simultaneous inference of selection and population growth from patterns of variation in the human genome

DEFF Research Database (Denmark)

Williamson, Scott H.; Hernandez, Ryan; Fledel-Alon, Adi

2005-01-01

Natural selection and demographic forces can have similar effects on patterns of DNA polymorphism. Therefore, to infer selection from samples of DNA sequences, one must simultaneously account for demographic effects. Here we take a model-based approach to this problem by developing predictions fo......-specific methods, and (iii) strong evidence for very recent population growth....... for patterns of polymorphism in the presence of both population size change and natural selection. If data are available from different functional classes of variation, and a priori information suggests that mutations in one of those classes are selectively neutral, then the putatively neutral class can...... this method to a large polymorphism data set from 301 human genes and find (i) widespread negative selection acting on standing nonsynonymous variation, (ii) that the fitness effects of nonsynonymous mutations are well predicted by several measures of amino acid exchangeability, especially site...

Phenotypic differentiation is associated with divergent sexual selection among closely related barn swallow populations

Czech Academy of Sciences Publication Activity Database

Wilkins, M. R.; Karaardic, H.; Vortman, Y.; Parchman, T. L.; Albrecht, Tomáš; Petrželková, Adéla; Özkan, L.; Pap, P. L.; Hubbard, J. K.; Hund, A. K.; Safran, R. J.

2016-01-01

Roč. 29, č. 12 (2016), s. 2410-2421 ISSN 1010-061X R&D Projects: GA MŠk(CZ) LH14045 Institutional support: RVO:68081766 Keywords : birds * natural selection * population genetics * sexual selection & conflicts * speciation Subject RIV: EG - Zoology Impact factor: 2.792, year: 2016

Magnetic susceptibility evolution and sedimentary environments on carbonate platform sediments and atolls, comparison of the Frasnian from Belgium and Alberta, Canada

Science.gov (United States)

da Silva, Anne-Christine; Potma, Ken; Weissenberger, John A. W.; Whalen, Michael T.; Humblet, Marc; Mabille, Cédric; Boulvain, Frédéric

2009-02-01

Magnetic susceptibility (MS) measurements on carbonate rocks are considered as a proxy for impurities delivered to the carbonate environments. In the absence of strong climatic or tectonic variations, bulk MS values have been linked to sea level variations, because sea-level fall increases clastic supply and therefore increases in magnetic mineral deposition. In this paper we explore the relationship between the average magnitude of bulk MS, with shallowing-up sequences and facies evolution in different Devonian carbonate complexes. Similarities and differences between these parameters have been scrutinized in carbonate attached platform and detached platforms (mounds and/or atolls) from Belgium and Canada. In the carbonate attached platforms from Belgium and Canada, the MS patterns are directly related to depositional environment. Mean MS values increase from the most distal towards the most proximal facies and towards the top of the majority of fourth-order shallowing-up sequences. These trends are in agreement with theoretical background (MS increases with regression). In the Belgian detached platform, the average MS pattern generally shows an opposite behaviour to that observed in the attached carbonate platforms. Average MS decreases towards the most proximal facies and towards the top of a majority of the fourth-order shallowing-up sequences. This behaviour can be explained by the influence of sedimentary rate and water agitation during deposition. A high sedimentary rate will dilute the magnetic minerals in the atoll facies and the high water agitation during deposition may be expected to have prevented the deposition of the magnetic grains. So, the combination of these two effects will result in the observed low values in the atoll crown and lagoonal facies. In the Canadian detached platform, MS is mainly negative. This means that the limestones are very pure. The technique does not appear to be appropriate in these rocks. The variations of average MS

Identifying Copy Number Variants under Selection in Geographically Structured Populations Based on -statistics

Directory of Open Access Journals (Sweden)

Hae-Hiang Song

2012-06-01

Full Text Available Large-scale copy number variants (CNVs in the human provide the raw material for delineating population differences, as natural selection may have affected at least some of the CNVs thus far discovered. Although the examination of relatively large numbers of specific ethnic groups has recently started in regard to inter-ethnic group differences in CNVs, identifying and understanding particular instances of natural selection have not been performed. The traditional FST measure, obtained from differences in allele frequencies between populations, has been used to identify CNVs loci subject to geographically varying selection. Here, we review advances and the application of multinomial-Dirichlet likelihood methods of inference for identifying genome regions that have been subject to natural selection with the FST estimates. The contents of presentation are not new; however, this review clarifies how the application of the methods to CNV data, which remains largely unexplored, is possible. A hierarchical Bayesian method, which is implemented via Markov Chain Monte Carlo, estimates locus-specific FST and can identify outlying CNVs loci with large values of FST. By applying this Bayesian method to the publicly available CNV data, we identified the CNV loci that show signals of natural selection, which may elucidate the genetic basis of human disease and diversity.

Identifying footprints of directional and balancing selection in marine and freshwater three-spined stickleback (Gasterosteus aculeatus) populations.

Science.gov (United States)

Mäkinen, H S; Cano, J M; Merilä, J

2008-08-01

Natural selection is expected to leave an imprint on the neutral polymorphisms at the adjacent genomic regions of a selected gene. While directional selection tends to reduce within-population genetic diversity and increase among-population differentiation, the reverse is expected under balancing selection. To identify targets of natural selection in the three-spined stickleback (Gasterosteus aculeatus) genome, 103 microsatellite and two indel markers including expressed sequence tags (EST) and quantitative trait loci (QTL)-associated loci, were genotyped in four freshwater and three marine populations. The results indicated that a high proportion of loci (14.7%) might be affected by balancing selection and a lower proportion (2.8%) by directional selection. The strongest signatures of directional selection were detected in a microsatellite locus and two indel markers located in the intronic regions of the Eda-gene coding for the number of lateral plates. Yet, other microsatellite loci previously found to be informative in QTL-mapping studies revealed no signatures of selection. Two novel microsatellite loci (Stn12 and Stn90) located in chromosomes I and VIII, respectively, showed signals of directional selection and might be linked to genomic regions containing gene(s) important for adaptive divergence. Although the coverage of the total genomic content was relatively low, the predominance of balancing selection signals is in agreement with the contention that balancing, rather than directional selection is the predominant mode of selection in the wild.

Genome patterns of selection and introgression of haplotypes in natural populations of the house mouse (Mus musculus.

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Fabian Staubach

Full Text Available General parameters of selection, such as the frequency and strength of positive selection in natural populations or the role of introgression, are still insufficiently understood. The house mouse (Mus musculus is a particularly well-suited model system to approach such questions, since it has a defined history of splits into subspecies and populations and since extensive genome information is available. We have used high-density single-nucleotide polymorphism (SNP typing arrays to assess genomic patterns of positive selection and introgression of alleles in two natural populations of each of the subspecies M. m. domesticus and M. m. musculus. Applying different statistical procedures, we find a large number of regions subject to apparent selective sweeps, indicating frequent positive selection on rare alleles or novel mutations. Genes in the regions include well-studied imprinted loci (e.g. Plagl1/Zac1, homologues of human genes involved in adaptations (e.g. alpha-amylase genes or in genetic diseases (e.g. Huntingtin and Parkin. Haplotype matching between the two subspecies reveals a large number of haplotypes that show patterns of introgression from specific populations of the respective other subspecies, with at least 10% of the genome being affected by partial or full introgression. Using neutral simulations for comparison, we find that the size and the fraction of introgressed haplotypes are not compatible with a pure migration or incomplete lineage sorting model. Hence, it appears that introgressed haplotypes can rise in frequency due to positive selection and thus can contribute to the adaptive genomic landscape of natural populations. Our data support the notion that natural genomes are subject to complex adaptive processes, including the introgression of haplotypes from other differentiated populations or species at a larger scale than previously assumed for animals. This implies that some of the admixture found in inbred strains of mice

Mineralogy, geochemistry and microfacies of late Quaternary periplatform sediments: Carbonate export cycles and secondary processes - Sanganeb Atoll and Abington Reef, Sudan, Central Red Sea

OpenAIRE

Emmermann, Peter

2000-01-01

A set of sediment cores was obtained in the periplatform realm close to Sanganeb Atoll and Abington Reef, about 20 miles offshore the Sudanese coast in the central Red Sea. Microfacies, mineralogy and geochemistry of periplatform sediments were analysed to quantify glacial-interglacial variations in carbonate production and sediment export of the reefs in response to late Quaternary sealevel fluctuations. The present study showed that the periplatform sediments from the Sudanese shelf to grea...

Efficient Generation and Selection of Virtual Populations in Quantitative Systems Pharmacology Models.

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Allen, R J; Rieger, T R; Musante, C J

2016-03-01

Quantitative systems pharmacology models mechanistically describe a biological system and the effect of drug treatment on system behavior. Because these models rarely are identifiable from the available data, the uncertainty in physiological parameters may be sampled to create alternative parameterizations of the model, sometimes termed "virtual patients." In order to reproduce the statistics of a clinical population, virtual patients are often weighted to form a virtual population that reflects the baseline characteristics of the clinical cohort. Here we introduce a novel technique to efficiently generate virtual patients and, from this ensemble, demonstrate how to select a virtual population that matches the observed data without the need for weighting. This approach improves confidence in model predictions by mitigating the risk that spurious virtual patients become overrepresented in virtual populations.

Genetic diversity and natural selection footprints of the glycine amidinotransferase gene in various human populations.

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Khan, Asifullah; Tian, Lei; Zhang, Chao; Yuan, Kai; Xu, Shuhua

2016-01-05

The glycine amidinotransferase gene (GATM) plays a vital role in energy metabolism in muscle tissues and is associated with multiple clinically important phenotypes. However, the genetic diversity of the GATM gene remains poorly understood within and between human populations. Here we analyzed the 1,000 Genomes Project data through population genetics approaches and observed significant genetic diversity across the GATM gene among various continental human populations. We observed considerable variations in GATM allele frequencies and haplotype composition among different populations. Substantial genetic differences were observed between East Asian and European populations (FST = 0.56). In addition, the frequency of a distinct major GATM haplotype in these groups was congruent with population-wide diversity at this locus. Furthermore, we identified GATM as the top differentiated gene compared to the other statin drug response-associated genes. Composite multiple analyses identified signatures of positive selection at the GATM locus, which was estimated to have occurred around 850 generations ago in European populations. As GATM catalyzes the key step of creatine biosynthesis involved in energy metabolism, we speculate that the European prehistorical demographic transition from hunter-gatherer to farming cultures was the driving force of selection that fulfilled creatine-based metabolic requirement of the populations.

Efforts to eradicate yellow crazy ants on Johnston Atoll: Results from Crazy Ant Strike Team IX, December 2014-June 2015

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Banko, Paul C.; Peck, Robert W.; Donmoyer, Kevin; Kropidlowski, Stephan; Pollock, Amanda

2015-01-01

The ecologically destructive yellow crazy ant (YCA; Anoplolepis gracilipes) was first detected on Johnston Atoll in January 2010. Within eight months, the U.S. Fish and Wildlife Service had mobilized its first crazy ant strike team (CAST), a group of biologists dedicated to testing and identifying insecticidal baits to be used to eradicate the ant on the atoll. During December 2014‒May 2015 CAST IX focused on testing hydrogel crystals saturated with sucrose solution (25%) carrying the insecticides thiamethoxam and dinotefuran against YCA. A series of experiments, including artificial nest box trials, and field-based palatability trials and eradication tests on small (500 m2 or 0.05 ha) and large plots (2500 m2 or 0.25 ha), were conducted to test concentrations of thiamethoxam ranging from 0.0005% to 0.01%, and dinotefuran at 0.05%. Additionally, the cat food-based matrix containing dinotefuran (0.05%), the standard bait used to suppress YCA on Johnston since 2011, and textured vegetable protein (TVP) carrying dinotefuran at 0.1% and 0.05% were included in large plot tests. Nest box trials were inconclusive due to a consistent loss of queen and worker ants in control boxes, so they were discontinued. Palatability trials suggested higher dosages of thiamethoxam (0.005 and 0.01%) were less attractive than lower dosages (0.0005 and 0.001%) and controls (sucrose only), but small and large plot experiments failed to identify a thiamethoxam concentration that was consistently effective at killing YCA. In contrast, hydrogel containing dinotefuran was consistently effective, killing >95% of YCA on small and large plots. As expected, the cat food bait effectively reduced YCA abundances, but was slightly less effective than hydrogel containing dinotefuran over time. Three successive, approximately weekly treatments of large plots with hydrogel bait, or other baits followed by hydrogel bait, suggest an increasing overall effectiveness, with no aversion of YCA to the bait

Consequences of habitat change and resource selection specialization for population limitation in cavity-nesting birds

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Martin, Thomas E.

2015-01-01

Resource selection specialization may increase vulnerability of populations to environmental change. One environmental change that may negatively impact some populations is the broad decline of quaking aspen Populus tremuloides, a preferred nest tree of cavity-nesting organisms who are commonly limited by nest-site availability. However, the long-term consequences of this habitat change for cavity-nesting bird populations are poorly studied.

Sexual selection by male choice in monogamous and polygynous human populations.

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Ihara, Y; Aoki, K

1999-02-01

The theoretical possibility of coevolution of a viability-reducing female physical trait and a male mating preference for that trait by Fisherian sexual selection in monogamous and polygynous populations is demonstrated using two-locus haploid models. It is assumed that there is dichotomous variation in male resources, resource-rich males have a wider choice among females than resource-poor males, and a female has greater reproductive success when mated with a resource-rich male than a resource-poor one. Under these assumptions, we find that sexual selection operates effectively when female reproductive success is strongly dependent on male resource, the proportion of females that mate with resource-rich males is neither small nor large, the degree of polygyny is low, and resources are inherited from father to son. We suggest that some human female physical traits may have evolved by sexual selection through male choice. The evolution of skin color by sexual selection is discussed as an example. Copyright 1999 Academic Press.

Evolution under domestication: ongoing artificial selection and divergence of wild and managed Stenocereus pruinosus (Cactaceae) populations in the Tehuacan Valley, Mexico.

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Parra, Fabiola; Casas, Alejandro; Peñaloza-Ramírez, Juan Manuel; Cortés-Palomec, Aurea C; Rocha-Ramírez, Víctor; González-Rodríguez, Antonio

2010-09-01

The Tehuacán Valley in Mexico is a principal area of plant domestication in Mesoamerica. There, artificial selection is currently practised on nearly 120 native plant species with coexisting wild, silvicultural and cultivated populations, providing an excellent setting for studying ongoing mechanisms of evolution under domestication. One of these species is the columnar cactus Stenocereus pruinosus, in which we studied how artificial selection is operating through traditional management and whether it has determined morphological and genetic divergence between wild and managed populations. Semi-structured interviews were conducted with 83 households of three villages to investigate motives and mechanisms of artificial selection. Management effects were studied by comparing variation patterns of 14 morphological characters and population genetics (four microsatellite loci) of 264 plants from nine wild, silvicultural and cultivated populations. Variation in fruit characters was recognized by most people, and was the principal target of artificial selection directed to favour larger and sweeter fruits with thinner or thicker peel, fewer spines and pulp colours other than red. Artificial selection operates in agroforestry systems favouring abundance (through not felling plants and planting branches) of the preferred phenotypes, and acts more intensely in household gardens. Significant morphological divergence between wild and managed populations was observed in fruit characters and plant vigour. On average, genetic diversity in silvicultural populations (H(E) = 0.743) was higher than in wild (H(E) = 0.726) and cultivated (H(E) = 0.700) populations. Most of the genetic variation (90.58 %) occurred within populations. High gene flow (Nm(FST) > 2) was identified among almost all populations studied, but was slightly limited by mountains among wild populations, and by artificial selection among wild and managed populations. Traditional management of S. pruinosus involves

Whole-genome sequencing of two North American Drosophila melanogaster populations reveals genetic differentiation and positive selection.

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Campo, D; Lehmann, K; Fjeldsted, C; Souaiaia, T; Kao, J; Nuzhdin, S V

2013-10-01

The prevailing demographic model for Drosophila melanogaster suggests that the colonization of North America occurred very recently from a subset of European flies that rapidly expanded across the continent. This model implies a sudden population growth and range expansion consistent with very low or no population subdivision. As flies adapt to new environments, local adaptation events may be expected. To describe demographic and selective events during North American colonization, we have generated a data set of 35 individual whole-genome sequences from inbred lines of D. melanogaster from a west coast US population (Winters, California, USA) and compared them with a public genome data set from Raleigh (Raleigh, North Carolina, USA). We analysed nuclear and mitochondrial genomes and described levels of variation and divergence within and between these two North American D. melanogaster populations. Both populations exhibit negative values of Tajima's D across the genome, a common signature of demographic expansion. We also detected a low but significant level of genome-wide differentiation between the two populations, as well as multiple allele surfing events, which can be the result of gene drift in local subpopulations on the edge of an expansion wave. In contrast to this genome-wide pattern, we uncovered a 50-kilobase segment in chromosome arm 3L that showed all the hallmarks of a soft selective sweep in both populations. A comparison of allele frequencies within this divergent region among six populations from three continents allowed us to cluster these populations in two differentiated groups, providing evidence for the action of natural selection on a global scale. © 2013 John Wiley & Sons Ltd.

Análisis de las estrategias de gestión del espectro radioeléctrico en un sistema LTE con la herramienta Atoll

OpenAIRE

López Diaz, Eduardo José

2012-01-01

Estudiar el impacto de usar una estrategia ICIC y los posibles esquemas de reuso frecuencial en un sistema LTE. English: the Mobile Communications Research Group as part of the Signal Theory and Communications Department of the Polytechnic University of Catalonia, in order to keep up with the latest technological trends in the mobile networks field, saw the need to study and analyze the new emerging mobile standards such as LTE (Long Term Evolution), and through Atoll, a mobile network rad...

Population structure of a widespread species under balancing selection: the case of Arbutus unedo L.

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Xabier eSantiso

2016-01-01

Full Text Available Arbutus unedo L. is an evergreen shrub with a circum-Mediterranean distribution that also reaches the Eurosiberian region in northern Iberia, Atlantic France, and a disjunct population in southern Ireland. Due to the variety of climatic conditions across its distribution range, the populations of A. unedo were expected to display local adaptation. Conversely, common garden experiments revealed that diverse genotypes from a range of provenances produce similar phenotypes through adaptive plasticity, suggesting the action of stabilizing selection across its climatically heterogeneous range. Nonetheless, since an uniform response might also result from extensive gene flow, we have inferred the population structure of A. unedo and assessed whether its extended and largely one-dimensional range influences gene flow with the help of AFLP genotypes for 491 individuals from 19 populations covering the whole range of the species. As we had anticipated, gene flow is restricted in A. unedo, providing further support to the hypothesis that stabilizing selection is the most likely explanation for the homogeneous phenotypes along the range. The Euro-Siberian populations were not particularly isolated from the Mediterranean. Instead, there was a distinct genetic divide between the populations around the Mediterranean Sea and those sampled along Atlantic coasts from northern Africa up to Ireland. This genetic structure suggests the action of historic rather than biogeographic factors as it seems consistent with a scenario of independent glacial refugia in the Atlantic and Mediterranean portions of the range of A. unedo. Genetic exchange was likewise restricted within each set of populations. Nevertheless, IBD was stronger, and FST increased faster with distance, along the Atlantic, suggesting that gene flow might be larger among Mediterranean populations. Genetic diversity was significantly lower in NW Iberia and Ireland than in other populations whereas

Population Structure of a Widespread Species under Balancing Selection: The Case of Arbutus unedo L.

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Santiso, Xabier; Lopez, Lua; Retuerto, Rubén; Barreiro, Rodolfo

2015-01-01

Arbutus unedo L. is an evergreen shrub with a circum-Mediterranean distribution that also reaches the Eurosiberian region in northern Iberia, Atlantic France, and a disjunct population in southern Ireland. Due to the variety of climatic conditions across its distribution range, the populations of A. unedo were expected to display local adaptation. Conversely, common garden experiments revealed that diverse genotypes from a range of provenances produce similar phenotypes through adaptive plasticity, suggesting the action of stabilizing selection across its climatically heterogeneous range. Nonetheless, since a uniform response might also result from extensive gene flow, we have inferred the population structure of A. unedo and assessed whether its extended and largely one-dimensional range influences gene flow with the help of AFLP genotypes for 491 individuals from 19 populations covering the whole range of the species. As we had anticipated, gene flow is restricted in A. unedo, providing further support to the hypothesis that stabilizing selection is the most likely explanation for the homogeneous phenotypes along the range. The Euro-Siberian populations were not particularly isolated from the Mediterranean. Instead, there was a distinct genetic divide between the populations around the Mediterranean Sea and those sampled along Atlantic coasts from northern Africa up to Ireland. This genetic structure suggests the action of historic rather than biogeographic factors as it seems consistent with a scenario of independent glacial refugia in the Atlantic and Mediterranean portions of the range of A. unedo. Genetic exchange was likewise restricted within each set of populations. Nevertheless, isolation-by-distance (IBD) was stronger, and F ST increased faster with distance, along the Atlantic, suggesting that gene flow might be larger among Mediterranean populations. Genetic diversity was significantly lower in NW Iberia and Ireland than in other populations whereas

Large-scale control site selection for population monitoring: an example assessing Sage-grouse trends

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Fedy, Bradley C.; O'Donnell, Michael; Bowen, Zachary H.

2015-01-01

Human impacts on wildlife populations are widespread and prolific and understanding wildlife responses to human impacts is a fundamental component of wildlife management. The first step to understanding wildlife responses is the documentation of changes in wildlife population parameters, such as population size. Meaningful assessment of population changes in potentially impacted sites requires the establishment of monitoring at similar, nonimpacted, control sites. However, it is often difficult to identify appropriate control sites in wildlife populations. We demonstrated use of Geographic Information System (GIS) data across large spatial scales to select biologically relevant control sites for population monitoring. Greater sage-grouse (Centrocercus urophasianus; hearafter, sage-grouse) are negatively affected by energy development, and monitoring of sage-grouse population within energy development areas is necessary to detect population-level responses. Weused population data (1995–2012) from an energy development area in Wyoming, USA, the Atlantic Rim Project Area (ARPA), and GIS data to identify control sites that were not impacted by energy development for population monitoring. Control sites were surrounded by similar habitat and were within similar climate areas to the ARPA. We developed nonlinear trend models for both the ARPA and control sites and compared long-term trends from the 2 areas. We found little difference between the ARPA and control sites trends over time. This research demonstrated an approach for control site selection across large landscapes and can be used as a template for similar impact-monitoring studies. It is important to note that identification of changes in population parameters between control and treatment sites is only the first step in understanding the mechanisms that underlie those changes. Published 2015. This article is a U.S. Government work and is in the public domain in the USA.

Sedimentary facies and Holocene depositional processes of Laura Island, Majuro Atoll

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Yasukochi, Toru; Kayanne, Hajime; Yamaguchi, Toru; Yamano, Hiroya

2014-10-01

The depositional processes that formed Laura Island, Majuro Atoll, Marshall Islands, were reconstructed based on a facies analysis of island sediments and spine ratios, and radiocarbon ages of foraminifera. Sedimentary facies were analyzed from trenches and drill cores excavated on the island and its adjacent reef flat. Depositional ages were obtained using benthic foraminifera (Calcarina) whose spines had not been abraded. The facies were classified into two types: gravelly and sandy. The initial sediments of these sites consisted of gravelly facies in the lower horizon and sandy facies in the upper horizon. Their ages were approximately 2000 cal BP and coincident with the onset of a 1.1-m decline in regional relative sea level, which enabled deposition of the gravelly facies. Half of the sand fraction of the sediment was composed of larger benthic foraminifera. The spine ratio showed that their supply source on the reef flat was located oceanside of the island. The supply source appears to have been caused by the relative sea-level fall. This indicates that the studied island was formed by a relative reduction in wave energy and enhanced foraminiferal supply, both of which were triggered by the late Holocene relative sea-level fall.

Toxicity of several contact insecticides to Tribolium castaneum (Herbst populations after selection with pirimiphos-methyl and deltamethrin

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Goran Andrić

2015-12-01

Full Text Available Laboratory bioassays were conducted to detect possible alteration in susceptibility of two field Tribolium castaneum (Herbst populations (sampled in a warehouse in Nikinci and a silo in Jakovo to dichlorvos, malathion, chlorpyrifos-methyl, pirimiphos-methyl, deltamethrin and bifenthrin after previous selection with the LD80 of pirimiphos-methyl and deltamethrin. Data from the topical application bioassays show that chlorpyrifos-methyl was the most toxic insecticide to T. castaneum adults of the Nikinci population selected with pirimiphosmethyl and deltamethrin, while malathion was the weakest, and both selection procedures changed/reduced significantly only the toxicity of deltamethrin and bifenthrin, increasing their resistance ratios (RR at the LD50 from 1.1 to 1.8 (bifenthrin and from 0.9 to 2.2 (deltamethrin. Deltamethrin was the most toxic insecticide for Jakovo adults selected with the LD80 of pirimiphosmethyl, while malathion was again the least toxic. Selection of that population had no effect on insecticide toxicity, except of malathion, which had a rise in RR at the LD50 from 26.0 to 29.8.

Whale shark economics: a valuation of wildlife tourism in South Ari Atoll, Maldives

KAUST Repository

Cagua, Edgar F.

2014-08-12

Whale sharks attract large numbers of tourists, divers and snorkelers each year to South Ari Atoll in the Republic of Maldives. Yet without information regarding the use and economic extent of the attraction, it is difficult to prioritize conservation or implement effective management plans. We used empirical recreational data and generalized mixed statistical models to conduct the first economic valuation (with direct spend as the primary proxy) of whale shark tourism in Maldives. We estimated that direct expenditures for whale shark focused tourism in the South Ari Marine Protected Area for 2012 and 2013 accounted for US$7.6 and $9.4 million respectively. These expenditures are based on an estimate of 72,000-78,000 tourists who are involved in whale shark excursions annually. That substantial amount of income to resort owners and operators, and tourism businesses in a relatively small area highlights the need to implement regulations and management that safeguard the sustainability of the industry through ensuring guest satisfaction and whale shark conservation. © 2014 Cagua et al.

Ages of subsurface stratigraphic intervals in the Quaternary of Enewetak Atoll, Marshall Islands

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Szabo, B. J.; Tracey, J.I.; Goter, E.R.

1985-01-01

Drill cores of Enewetak Atoll, Marshall Islands, reveal six stratigraphic intervals, numbered in downward sequence, which represent vertical coral growth during Quaternary interglaciations. Radiocarbon dates indicate that the Holocene sea transgressed the emergent reef platform by about 8000 yr B.P. The reef grew rapidly upward (about 5 to 10 mm/yr) until about 6500 yr B.P. Afterward vertical growth slowed to about 0.5 mm/yr, then lateral development became dominant during the last several thousand years. The second interval is dated at 131,000 ?? 3000 yr B.P. by uranium series. This unit correlates with oxygen-isotope substage 5e and with terrace VIIa of Huon Peninsula, New Guinea, and of Main Reef-2 terrace at Atauro Island. The third interval is not dated because corals were recrystallized and it is tentatively correlated with either oxygen-isotope stages 7 or 9. The age of the fourth interval is estimated at 454,000 ?? 100,000 yr B.P. from measured 234U 238U activity ratios. This unit is correlated with either oxygen-isotope stage 9, 11, or 13. ?? 1985.

Genetic characterization of Apis mellifera macedonica (type “rodopica” populations selectively controlled in Bulgaria

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Vida GEORGIEVA

2016-09-01

Full Text Available The genetic variability in selectively controlled in Bulgaria local honey bee populations, representing Apis mellifera macedonica subspecies (type “rodopica”, has been studied by usage of alloenzymic analysis of six enzymic systems (MDH-1, ME, EST-3, ALP, PGM and HK corresponding to 6 loci. Totally 324 worker bee individuals from 9 different local populations belonging to breeding stock of National Bee Breeding Association were included in this investigation. All of the studied loci were found to be polymorphic in most of the populations with the exception of EST-3 locus which was established to be fixed in two of investigated populations. Polymorphism with three alleles was ascertained for MDH, ME, ALP and PGM loci and with four alleles – for EST-3 and HK loci. The most common alleles in all of the investigated populations were ME 100, EST-3 100, PGM 100 and HK 100. Two private alleles (frequency < 0.05 were found for two of the studied populations. The calculated level of polymorphism was between 88.33% and 100%. The observed and expected heterozygosities were found to range from 0.186 to 0.301, and from 0.205 to 0.305, respectively. The calculated mean Fst level was 0.028. Allele frequencies of all studied loci were used to estimate Nei’s (1972 genetic distance, which was established to range between 0.001 and 0.028 among the selectively controlled populations studied. The assignment test showed a high level of consolidation for the all studied populations.

Evidences for balancing selection from PAH-BglII and PAH-EcoRI polymorphisms in Isfahan population

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Zahra Fazeli Attar

2010-01-01

Full Text Available Two polymorphic markers including BglII and EcoRI, were identified at intron 1 and intron 5 of PAH gene. In order to test whether these polymorphisms are behaving as neutral alleles or are being subjected to selective pressures in Isfahan population, 110 individuals were genotyped by PCR-RFLP. The Arlequin input file was prepared by use of phase-known haplotype data and Neutrality tests (Tajima D test and Fu’s Fs test were done using Arlequin program. 42 individuals were found heterozygous for both polymorphisms whose haplotype phase remained unknown. The BglII-EcoRI haplotype phase was known only at 68 individuals who were used for preparation of input file. Tajima's D value and Fs value at Isfahan population were 1.7 and 1.02, respectively. Positive values of Fs and D>0 indicated that these polymorphisms are under selection pressure at Isfahan population. Although these polymorphisms were in the non-coding region of PAH gene, but these were not neutral alleles and positive values of these tests provided evidence for balancing selection of these polymorphisms at Isfahan population. The results of this study could improve our understanding of evolutionary history and structure of Isfahan population.

Radiation doses and cancer risks in the Marshall Islands associated with exposure to radioactive fallout from Bikini and Enewetak nuclear weapons tests: summary.

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Simon, Steven L; Bouville, André; Land, Charles E; Beck, Harold L

2010-08-01

Nuclear weapons testing conducted at Bikini and Enewetak Atolls during 1946-1958 resulted in exposures of the resident population of the present-day Republic of the Marshall Islands to radioactive fallout. This paper summarizes the results of a thorough and systematic reconstruction of radiation doses to that population, by year, age at exposure, and atoll of residence, and the related cancer risks. Detailed methods and results are presented in a series of companion papers in this volume. From our analysis, we concluded that 20 of the 66 nuclear tests conducted in or near the Marshall Islands resulted in measurable fallout deposition on one or more of the inhabited atolls of the Marshall Islands. In this work, we estimated deposition densities (kBq m(-2)) of all important dose-contributing radionuclides at each of the 32 atolls and separate reef islands of the Marshall Islands. Quantitative deposition estimates were made for 63 radionuclides from each test at each atoll. Those estimates along with reported measurements of exposure rates at various times after fallout were used to estimate radiation absorbed doses to the red bone marrow, thyroid gland, stomach wall, and colon wall of atoll residents from both external and internal exposure. Annual doses were estimated for six age groups ranging from newborns to adults. We found that the total deposition of 137Cs, external dose, internal organ doses, and cancer risks followed the same geographic pattern with the large population of the southern atolls receiving the lowest doses. Permanent residents of the southern atolls who were of adult age at the beginning of the testing period received external doses ranging from 5 to 12 mGy on average; the external doses to adults at the mid-latitude atolls ranged from 22 to 59 mGy on average, while the residents of the northern atolls received external doses in the hundreds to over 1,000 mGy. Internal doses varied significantly by age at exposure, location, and organ. Except

Evolution of increased adult longevity in Drosophila melanogaster populations selected for adaptation to larval crowding.

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Shenoi, V N; Ali, S Z; Prasad, N G

2016-02-01

In holometabolous animals such as Drosophila melanogaster, larval crowding can affect a wide range of larval and adult traits. Adults emerging from high larval density cultures have smaller body size and increased mean life span compared to flies emerging from low larval density cultures. Therefore, adaptation to larval crowding could potentially affect adult longevity as a correlated response. We addressed this issue by studying a set of large, outbred populations of D. melanogaster, experimentally evolved for adaptation to larval crowding for 83 generations. We assayed longevity of adult flies from both selected (MCUs) and control populations (MBs) after growing them at different larval densities. We found that MCUs have evolved increased mean longevity compared to MBs at all larval densities. The interaction between selection regime and larval density was not significant, indicating that the density dependence of mean longevity had not evolved in the MCU populations. The increase in longevity in MCUs can be partially attributed to their lower rates of ageing. It is also noteworthy that reaction norm of dry body weight, a trait probably under direct selection in our populations, has indeed evolved in MCU populations. To the best of our knowledge, this is the first report of the evolution of adult longevity as a correlated response of adaptation to larval crowding. © 2015 European Society For Evolutionary Biology. Journal of Evolutionary Biology © 2015 European Society For Evolutionary Biology.

Unraveling the effects of selection and demography on immune gene variation in free-ranging plains zebra (Equus quagga) populations.

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Kamath, Pauline L; Getz, Wayne M

2012-01-01

Demography, migration and natural selection are predominant processes affecting the distribution of genetic variation among natural populations. Many studies use neutral genetic markers to make inferences about population history. However, the investigation of functional coding loci, which directly reflect fitness, is critical to our understanding of species' ecology and evolution. Immune genes, such as those of the Major Histocompatibility Complex (MHC), play an important role in pathogen recognition and provide a potent model system for studying selection. We contrasted diversity patterns of neutral data with MHC loci, ELA-DRA and -DQA, in two southern African plains zebra (Equus quagga) populations: Etosha National Park, Namibia, and Kruger National Park, South Africa. Results from neutrality tests, along with observations of elevated diversity and low differentiation across populations, supported previous genus-level evidence for balancing selection at these loci. Despite being low, MHC divergence across populations was significant and may be attributed to drift effects typical of geographically separated populations experiencing little to no gene flow, or alternatively to shifting allele frequency distributions driven by spatially variable and fluctuating pathogen communities. At the DRA, zebra exhibited geographic differentiation concordant with microsatellites and reduced levels of diversity in Etosha due to highly skewed allele frequencies that could not be explained by demography, suggestive of spatially heterogeneous selection and local adaptation. This study highlights the complexity in which selection affects immune gene diversity and warrants the need for further research on the ecological mechanisms shaping patterns of adaptive variation among natural populations.

Natural selection on HFE in Asian populations contributes to enhanced non-heme iron absorption.

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Ye, Kaixiong; Cao, Chang; Lin, Xu; O'Brien, Kimberly O; Gu, Zhenglong

2015-06-10

HFE, a major regulator of iron (Fe) homeostasis, has been suggested to be under positive selection in both European and Asian populations. While the genetic variant under selection in Europeans (a non-synonymous mutation, C282Y) has been relatively well-studied, the adaptive variant in Asians and its functional consequences are still unknown. Identifying the adaptive HFE variants in Asians will not only elucidate the evolutionary history and the genetic basis of population difference in Fe status, but also assist the future practice of genome-informed dietary recommendation. Using data from the International HapMap Project, we confirmed the signatures of positive selection on HFE in Asian populations and identified a candidate adaptive haplotype that is common in Asians (52.35-54.71%) but rare in Europeans (5.98%) and Africans (4.35%). The T allele at tag SNP rs9366637 (C/T) captured 95.8% of this Asian-common haplotype. A significantly reduced HFE expression was observed in individuals carrying T/T at rs9366637 compared to C/C and C/T, indicating a possible role of gene regulation in adaptation. We recruited 57 women of Asian descent and measured Fe absorption using stable isotopes in those homozygous at rs9366637. We observed a 22% higher absorption in women homozygous for the Asian-common haplotype (T/T) compared to the control genotype (C/C). Additionally, compared with a group of age-matched Caucasian women, Asian women exhibited significantly elevated Fe absorption. Our results indicate parallel adaptation of HFE gene in Europeans and Asians with different genetic variants. Moreover, natural selection on HFE may have contributed to elevated Fe absorption in Asians. This study regarding population differences in Fe homeostasis has significant medical impact as high Fe level has been linked to an increased disease risk of metabolic syndromes.

Identifying selected regions from heterozygosity and divergence using a light-coverage genomic dataset from two human populations.

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Taras K Oleksyk

2008-03-01

Full Text Available When a selective sweep occurs in the chromosomal region around a target gene in two populations that have recently separated, it produces three dramatic genomic consequences: 1 decreased multi-locus heterozygosity in the region; 2 elevated or diminished genetic divergence (F(ST of multiple polymorphic variants adjacent to the selected locus between the divergent populations, due to the alternative fixation of alleles; and 3 a consequent regional increase in the variance of F(ST (S(2F(ST for the same clustered variants, due to the increased alternative fixation of alleles in the loci surrounding the selection target. In the first part of our study, to search for potential targets of directional selection, we developed and validated a resampling-based computational approach; we then scanned an array of 31 different-sized moving windows of SNP variants (5-65 SNPs across the human genome in a set of European and African American population samples with 183,997 SNP loci after correcting for the recombination rate variation. The analysis revealed 180 regions of recent selection with very strong evidence in either population or both. In the second part of our study, we compared the newly discovered putative regions to those sites previously postulated in the literature, using methods based on inspecting patterns of linkage disequilibrium, population divergence and other methodologies. The newly found regions were cross-validated with those found in nine other studies that have searched for selection signals. Our study was replicated especially well in those regions confirmed by three or more studies. These validated regions were independently verified, using a combination of different methods and different databases in other studies, and should include fewer false positives. The main strength of our analysis method compared to others is that it does not require dense genotyping and therefore can be used with data from population-based genome SNP scans

Recurrent Selection and Participatory Plant Breeding for Improvement of Two Organic Open-Pollinated Sweet Corn (Zea mays L. Populations

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Adrienne C. Shelton

2015-04-01

Full Text Available Organic growers face unique challenges when raising sweet corn, and benefit from varieties that maintain high eating quality, germinate consistently, deter insect pests, and resist diseases. Genotype by environment rank changes can occur in the performance of cultivars grown on conventional and organic farms, yet few varieties have been bred specifically for organic systems. The objective of this experiment was to evaluate the changes made to open-pollinated sweet corn populations using recurrent selection and a participatory plant breeding (PPB methodology. From 2008 to 2011, four cycles of two open-pollinated (OP sweet corn populations were selected on a certified organic farm in Minnesota using a modified ear-to-row recurrent selection scheme. Selections were made in collaboration with an organic farmer, with selection criteria based on traits identified by the farmer. In 2012 and 2013, the population cycles were evaluated in a randomized complete block design in two certified organic locations in Wisconsin, with multiple replications in each environment. Significant linear trends were found among cycles of selection for quantitative and qualitative traits, suggesting the changes were due to recurrent selection and PPB methodology for these populations. However, further improvement is necessary to satisfy the requirements for a useful cultivar for organic growers.

Distribution of events of positive selection and population differentiation in a metabolic pathway: the case of asparagine N-glycosylation

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Dall’Olio Giovanni

2012-06-01

Full Text Available Abstract Background Asparagine N-Glycosylation is one of the most important forms of protein post-translational modification in eukaryotes. This metabolic pathway can be subdivided into two parts: an upstream sub-pathway required for achieving proper folding for most of the proteins synthesized in the secretory pathway, and a downstream sub-pathway required to give variability to trans-membrane proteins, and involved in adaptation to the environment and innate immunity. Here we analyze the nucleotide variability of the genes of this pathway in human populations, identifying which genes show greater population differentiation and which genes show signatures of recent positive selection. We also compare how these signals are distributed between the upstream and the downstream parts of the pathway, with the aim of exploring how forces of population differentiation and positive selection vary among genes involved in the same metabolic pathway but subject to different functional constraints. Results Our results show that genes in the downstream part of the pathway are more likely to show a signature of population differentiation, while events of positive selection are equally distributed among the two parts of the pathway. Moreover, events of positive selection are frequent on genes that are known to be at bifurcation points, and that are identified as being in key position by a network-level analysis such as MGAT3 and GCS1. Conclusions These findings indicate that the upstream part of the Asparagine N-Glycosylation pathway has lower diversity among populations, while the downstream part is freer to tolerate diversity among populations. Moreover, the distribution of signatures of population differentiation and positive selection can change between parts of a pathway, especially between parts that are exposed to different functional constraints. Our results support the hypothesis that genes involved in constitutive processes can be expected to show

Phenotypic selection on flowering phenology and pollination efficiency traits between Primula populations with different pollinator assemblages

OpenAIRE

Wu, Yun; Li, Qing‐Jun

2017-01-01

Abstract Floral traits have largely been attributed to phenotypic selection in plant–pollinator interactions. However, the strength of this link has rarely been ascertained with real pollinators. We conducted pollinator observations and estimated selection through female fitness on flowering phenology and floral traits between two Primula secundiflora populations. We quantified pollinator‐mediated selection by subtracting estimates of selection gradients of plants receiving supplemental hand ...

Phenotypic selection on leaf WUE and related ecophysiological traits for natural populations of desert sunflowers

NARCIS (Netherlands)

Donovan, L.A.; Rosenthal, D.R.; Dudley, S.A.; Ludwig, F.

2007-01-01

Plant water-use efficiency (WUE) is expected to affect plant fitness and thus be under natural selection in arid habitats. Although many natural population studies have assessed plant WUE, only a few related WUE to fitness. The further determination of whether selection on WUE is direct or indirect

Bomb survivor selection and consequences for estimates of population cancer risks

International Nuclear Information System (INIS)

Little, M.P.; Charles, M.W.

1990-01-01

Health records of the Japanese bomb survivor population [with the 1965 (T65D) and 1986 (DS86) dosimetry systems] have been analyzed and some evidence found for the selection effect hypothesized by Stewart and Kneale. This is found to be significant in only the first of the periods examined (1950-1958), and the effect diminishes in magnitude thereafter. There are indications that the effect might be an artifact of the T65D dosimetry, in which it is observed more strongly than in the DS86 data. There is no evidence to suggest that selection on this basis might confer correspondingly reduced susceptibility to radiation-induced cancer. If, however, one makes this assumption, as suggested by Stewart and Kneale, then current estimates of population cancer risks might need to be inflated by between 5% and 35% (for excess cancer deaths, Gy-1) or between 8% and 40% (for years of life lost, Gy-1) to account for this. It is likely that these figures, even assuming them not to be simply an artifact of the T65D dosimetry, overestimate the degree of adjustment required to the risk estimates

Selection bias in population-based cancer case-control studies due to incomplete sampling frame coverage.

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Walsh, Matthew C; Trentham-Dietz, Amy; Gangnon, Ronald E; Nieto, F Javier; Newcomb, Polly A; Palta, Mari

2012-06-01

Increasing numbers of individuals are choosing to opt out of population-based sampling frames due to privacy concerns. This is especially a problem in the selection of controls for case-control studies, as the cases often arise from relatively complete population-based registries, whereas control selection requires a sampling frame. If opt out is also related to risk factors, bias can arise. We linked breast cancer cases who reported having a valid driver's license from the 2004-2008 Wisconsin women's health study (N = 2,988) with a master list of licensed drivers from the Wisconsin Department of Transportation (WDOT). This master list excludes Wisconsin drivers that requested their information not be sold by the state. Multivariate-adjusted selection probability ratios (SPR) were calculated to estimate potential bias when using this driver's license sampling frame to select controls. A total of 962 cases (32%) had opted out of the WDOT sampling frame. Cases age <40 (SPR = 0.90), income either unreported (SPR = 0.89) or greater than $50,000 (SPR = 0.94), lower parity (SPR = 0.96 per one-child decrease), and hormone use (SPR = 0.93) were significantly less likely to be covered by the WDOT sampling frame (α = 0.05 level). Our results indicate the potential for selection bias due to differential opt out between various demographic and behavioral subgroups of controls. As selection bias may differ by exposure and study base, the assessment of potential bias needs to be ongoing. SPRs can be used to predict the direction of bias when cases and controls stem from different sampling frames in population-based case-control studies.

The effects of stabilizing and directional selection on phenotypic and genotypic variation in a population of RNA enzymes.

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Hayden, Eric J; Bratulic, Sinisa; Koenig, Iwo; Ferrada, Evandro; Wagner, Andreas

2014-02-01

The distribution of variation in a quantitative trait and its underlying distribution of genotypic diversity can both be shaped by stabilizing and directional selection. Understanding either distribution is important, because it determines a population's response to natural selection. Unfortunately, existing theory makes conflicting predictions about how selection shapes these distributions, and very little pertinent experimental evidence exists. Here we study a simple genetic system, an evolving RNA enzyme (ribozyme) in which a combination of high throughput genotyping and measurement of a biochemical phenotype allow us to address this question. We show that directional selection, compared to stabilizing selection, increases the genotypic diversity of an evolving ribozyme population. In contrast, it leaves the variance in the phenotypic trait unchanged.

Unraveling the effects of selection and demography on immune gene variation in free-ranging plains zebra (Equus quagga populations.

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Pauline L Kamath

Full Text Available Demography, migration and natural selection are predominant processes affecting the distribution of genetic variation among natural populations. Many studies use neutral genetic markers to make inferences about population history. However, the investigation of functional coding loci, which directly reflect fitness, is critical to our understanding of species' ecology and evolution. Immune genes, such as those of the Major Histocompatibility Complex (MHC, play an important role in pathogen recognition and provide a potent model system for studying selection. We contrasted diversity patterns of neutral data with MHC loci, ELA-DRA and -DQA, in two southern African plains zebra (Equus quagga populations: Etosha National Park, Namibia, and Kruger National Park, South Africa. Results from neutrality tests, along with observations of elevated diversity and low differentiation across populations, supported previous genus-level evidence for balancing selection at these loci. Despite being low, MHC divergence across populations was significant and may be attributed to drift effects typical of geographically separated populations experiencing little to no gene flow, or alternatively to shifting allele frequency distributions driven by spatially variable and fluctuating pathogen communities. At the DRA, zebra exhibited geographic differentiation concordant with microsatellites and reduced levels of diversity in Etosha due to highly skewed allele frequencies that could not be explained by demography, suggestive of spatially heterogeneous selection and local adaptation. This study highlights the complexity in which selection affects immune gene diversity and warrants the need for further research on the ecological mechanisms shaping patterns of adaptive variation among natural populations.

Selection to improve spring fertility in a crossbred sheep population

OpenAIRE

Al-Shorepy, Salih Abdu

1995-01-01

Reproductive and productive performance of a composite sheep population, containing 50% Dorset, 25% Rambouillet and 25% Finnsheep breeding and under selection for ability to lamb in the fall, was evaluated. Traits considered were spring fertility, faIl litter size, live weights at birth, weaning, and at about 90 and 120 d of age, and scrotal circumference at weaning and at about 90 and 120 d of age. Fertility was defined as 1 or 0 depending upon whether a ewe lambed or failed t...

Influence of population selection on the 99th percentile reference value for cardiac troponin assays.

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Collinson, Paul O; Heung, Yen Ming; Gaze, David; Boa, Frances; Senior, Roxy; Christenson, Robert; Apple, Fred S

2012-01-01

We sought to determine the effect of patient selection on the 99th reference percentile of 2 sensitive and 1 high-sensitivity (hs) cardiac troponin assays in a well-defined reference population. Individuals>45 years old were randomly selected from 7 representative local community practices. Detailed information regarding the participants was collected via questionnaires. The healthy reference population was defined as individuals who had no history of vascular disease, hypertension, or heavy alcohol intake; were not receiving cardiac medication; and had blood pressure60 mL·min(-1)·(1.73 m2)(-1), and normal cardiac function according to results of echocardiography. Samples were stored at -70 °C until analysis for cardiac troponin I (cTnI) and cardiac troponin T (cTnT) and N-terminal pro-B-type natriuretic peptide. Application of progressively more stringent population selection strategies to the initial baseline population of 545 participants until the only individuals who remained were completely healthy according to the study criteria reduced the number of outliers seen and led to a progressive decrease in the 99th-percentile value obtained for the Roche hs-cTnT assay and the sensitive Beckman cTnI assay but not for the sensitive Siemens Ultra cTnI assay. Furthermore, a sex difference found in the baseline population for the hs-cTnT (P=0.0018) and Beckman cTnI assays (Pstrategy significantly influenced the 99th percentile reference values determined for troponin assays and the observed sex differences in troponin concentrations.

Persistency of Prediction Accuracy and Genetic Gain in Synthetic Populations Under Recurrent Genomic Selection

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Dominik Müller

2017-03-01

Full Text Available Recurrent selection (RS has been used in plant breeding to successively improve synthetic and other multiparental populations. Synthetics are generated from a limited number of parents ( Np , but little is known about how Np affects genomic selection (GS in RS, especially the persistency of prediction accuracy (rg , g ^ and genetic gain. Synthetics were simulated by intermating Np= 2–32 parent lines from an ancestral population with short- or long-range linkage disequilibrium (LDA and subjected to multiple cycles of GS. We determined rg , g ^ and genetic gain across 30 cycles for different training set (TS sizes, marker densities, and generations of recombination before model training. Contributions to rg , g ^ and genetic gain from pedigree relationships, as well as from cosegregation and LDA between QTL and markers, were analyzed via four scenarios differing in (i the relatedness between TS and selection candidates and (ii whether selection was based on markers or pedigree records. Persistency of rg , g ^ was high for small Np , where predominantly cosegregation contributed to rg , g ^ , but also for large Np , where LDA replaced cosegregation as the dominant information source. Together with increasing genetic variance, this compensation resulted in relatively constant long- and short-term genetic gain for increasing Np > 4, given long-range LDA in the ancestral population. Although our scenarios suggest that information from pedigree relationships contributed to rg , g ^ for only very few generations in GS, we expect a longer contribution than in pedigree BLUP, because capturing Mendelian sampling by markers reduces selective pressure on pedigree relationships. Larger TS size (NTS and higher marker density improved persistency of rg , g ^ and hence genetic gain, but additional recombinations could not increase genetic gain.

The limits of weak selection and large population size in evolutionary game theory.

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Sample, Christine; Allen, Benjamin

2017-11-01

Evolutionary game theory is a mathematical approach to studying how social behaviors evolve. In many recent works, evolutionary competition between strategies is modeled as a stochastic process in a finite population. In this context, two limits are both mathematically convenient and biologically relevant: weak selection and large population size. These limits can be combined in different ways, leading to potentially different results. We consider two orderings: the [Formula: see text] limit, in which weak selection is applied before the large population limit, and the [Formula: see text] limit, in which the order is reversed. Formal mathematical definitions of the [Formula: see text] and [Formula: see text] limits are provided. Applying these definitions to the Moran process of evolutionary game theory, we obtain asymptotic expressions for fixation probability and conditions for success in these limits. We find that the asymptotic expressions for fixation probability, and the conditions for a strategy to be favored over a neutral mutation, are different in the [Formula: see text] and [Formula: see text] limits. However, the ordering of limits does not affect the conditions for one strategy to be favored over another.

Signature of balancing selection at the MC1R gene in Kunming dog populations.

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Guo-dong Wang

Full Text Available Coat color in dog breeds is an excellent character for revealing the power of artificial selection, as it is extremely diverse and likely the result of recent domestication. Coat color is generated by melanocytes, which synthesize pheomelanin (a red or yellow pigment or eumelanin (a black or brown pigment through the pigment type-switching pathway, and is regulated by three genes in dogs: MC1R (melanocortin receptor 1, CBD103 (β-defensin 103, and ASIP (agouti-signaling protein precursor. The genotypes of these three gene loci in dog breeds are associated with coat color pattern. Here, we resequenced these three gene loci in two Kunming dog populations and analyzed these sequences using population genetic approaches to identify evolutionary patterns that have occurred at these loci during the recent domestication and breeding of the Kunming dog. The analysis showed that MC1R undergoes balancing selection in both Kunming dog populations, and that the Fst value for MC1R indicates significant genetic differentiation across the two populations. In contrast, similar results were not observed for CBD103 or ASIP. These results suggest that high heterozygosity and allelic differences at the MC1R locus may explain both the mixed color coat, of yellow and black, and the difference in coat colors in both Kunming dog populations.

AFLP genome scanning reveals divergent selection in natural populations of Liriodendron chinense (Magnoliaceae along a latitudinal transect

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Aihong eYang

2016-05-01

Full Text Available Understanding adaptive genetic variation and its relation to environmental factors are important for understanding how plants adapt to climate change and for managing genetic resources. Genome scans for the loci exhibiting either notably high or low levels of population differentiation (outlier loci provide one means of identifying genomic regions possibly associated with convergent or divergent selection. In this study, we combined AFLP genome scan and environmental association analysis to test for signals of natural selection in natural populations of Liriodendron chinense (Chinese Tulip Tree; Magnoliaceae along a latitudinal transect. We genotyped 276 individuals from 11 populations of L. chinense using 987 AFLP markers. Two complementary methods (Dfdist and BayeScan and association analysis between AFLP loci and climate factors were applied to detect outlier loci. Our analyses recovered both neutral and potentially adaptive genetic differentiation among populations of L. chinense. We found moderate genetic diversity within populations and high genetic differentiation among populations with reduced genetic diversity towards the periphery of the species ranges. Nine AFLP marker loci showed evidence of being outliers for population differentiation for both detection methods. Of these, six were strongly associated with at least one climate factor. Temperature, precipitation and radiation were found to be three important factors influencing local adaptation of L. chinense. The outlier AFLP loci are likely not the target of natural selection, but the neighboring genes of these loci might be involved in local adaptation. Hence, these candidates should be validated by further studies.

GALEX-SELECTED LYMAN BREAK GALAXIES AT z {approx} 2: COMPARISON WITH OTHER POPULATIONS

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Haberzettl, L.; Williger, G. [Department of Physics and Astronomy, University of Louisville, Louisville KY 20492 (United States); Lehnert, M. D. [GEPI, Observatoire de Paris, UMR 8111 du CNRS, 5 Place Jules Janssen, 92195 Meudon (France); Nesvadba, N. [Institut d' Astrophysique Spatiale, CNRS, Universite Paris-Sud, Bat. 120-121, 91405 Orsay (France); Davies, L. [Department of Physics, H H Wills Physics Laboratory, University of Bristol, Tyndall Avenue, Bristol BS8 1TL (United Kingdom)

2012-01-20

We present results of a search for bright Lyman break galaxies (LBGs) at 1.5 {<=} z {<=} 2.5 in the GOODS-S field using an NUV-dropout technique in combination with color selection. We derived a sample of 73 LBG candidates. We compare our selection efficiencies to BM/BX and BzK methods (techniques solely based on ground-based data sets), and find the NUV data to provide greater efficiency for selecting star-forming galaxies. We estimate LBG candidate ages, masses, star formation rates, and extinction from fitting PEGASE synthesis evolution models. We find that about 20% of our LBG candidates are comparable to infrared-luminous LBGs or submillimeter galaxies which are thought to be precursors of massive elliptical galaxies today. Overall, we can show that although BM/BX and BzK methods do identify star-forming galaxies at z {approx} 2, the sample they provide biases against those star-forming galaxies which are more massive and contain sizeable red stellar populations. A true Lyman break criterion at z {approx} 2 is therefore more directly comparable to the populations found at z {approx} 3, which does contain a red fraction.

GALEX-SELECTED LYMAN BREAK GALAXIES AT z ∼ 2: COMPARISON WITH OTHER POPULATIONS

International Nuclear Information System (INIS)

Haberzettl, L.; Williger, G.; Lehnert, M. D.; Nesvadba, N.; Davies, L.

2012-01-01

We present results of a search for bright Lyman break galaxies (LBGs) at 1.5 ≤ z ≤ 2.5 in the GOODS-S field using an NUV-dropout technique in combination with color selection. We derived a sample of 73 LBG candidates. We compare our selection efficiencies to BM/BX and BzK methods (techniques solely based on ground-based data sets), and find the NUV data to provide greater efficiency for selecting star-forming galaxies. We estimate LBG candidate ages, masses, star formation rates, and extinction from fitting PEGASE synthesis evolution models. We find that about 20% of our LBG candidates are comparable to infrared-luminous LBGs or submillimeter galaxies which are thought to be precursors of massive elliptical galaxies today. Overall, we can show that although BM/BX and BzK methods do identify star-forming galaxies at z ∼ 2, the sample they provide biases against those star-forming galaxies which are more massive and contain sizeable red stellar populations. A true Lyman break criterion at z ∼ 2 is therefore more directly comparable to the populations found at z ∼ 3, which does contain a red fraction.

Providing an authorization for an ex gratia payment to the people of Bikini Atoll, in the Marshall Islands of the Trust Territory of the Pacific Islands. Senate, Ninety-Fourth Congress, First Session, June 2, 1975

International Nuclear Information System (INIS)

Anon.

1975-01-01

Proposed legislation for payment of dollars 3 million ex gratia to the people of Bikini Atoll due to their relocation resulting from nuclear-weapons testing and successive contamination of their homeland is presented. The Committee on Interior and Insular Affairs recommends passage

Natural and sexual selection giveth and taketh away reproductive barriers: models of population divergence in guppies.

Science.gov (United States)

Labonne, Jacques; Hendry, Andrew P

2010-07-01

The standard predictions of ecological speciation might be nuanced by the interaction between natural and sexual selection. We investigated this hypothesis with an individual-based model tailored to the biology of guppies (Poecilia reticulata). We specifically modeled the situation where a high-predation population below a waterfall colonizes a low-predation population above a waterfall. Focusing on the evolution of male color, we confirm that divergent selection causes the appreciable evolution of male color within 20 generations. The rate and magnitude of this divergence were reduced when dispersal rates were high and when female choice did not differ between environments. Adaptive divergence was always coupled to the evolution of two reproductive barriers: viability selection against immigrants and hybrids. Different types of sexual selection, however, led to contrasting results for another potential reproductive barrier: mating success of immigrants. In some cases, the effects of natural and sexual selection offset each other, leading to no overall reproductive isolation despite strong adaptive divergence. Sexual selection acting through female choice can thus strongly modify the effects of divergent natural selection and thereby alter the standard predictions of ecological speciation. We also found that under no circumstances did divergent selection cause appreciable divergence in neutral genetic markers.

[Risk factors and coronary heart disease prevention in selected Lódź population--part II].

Science.gov (United States)

Kowalski, Jan; Kos, Małgorzata; Gburek, Jolanta; Wrocławski, Witold; Pawlicki, Lucjan

2005-12-01

Evaluation of the knowledge on CHD risk factors in selected Lódź population was made. Realization of primary and secondary CHD prevention principles was assessed. Over 20% of patients with CHD and over 38% of subjects without CHD did not realize the prevention principles. Hypolipemic therapy was effective only in 44.21% of patients with CHD and 35.9% of subjects without CHD. Antihypertensive therapy was successful in about 55% of patients with CHD and 35% of subjects without CHD. The results of our study have shown low effectiveness of both CHD prevention principles realization and hipolipemic and antihypertensive therapy in selected Lódź population.

Endogamia e limite de seleção em populações selecionadas obtidas por simulação Inbreeding and selection limit in selected population obtained by simulation

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Fernanda Cristina Breda

2004-12-01

Full Text Available Objetivou-se, com este trabalho, avaliar o comportamento do coeficiente de endogamia e do limite de seleção considerando população-base selecionada. Utilizou-se o programa GENESYS para a simulação do genoma constituído de uma única característica quantitativa com valor de herdabilidade igual a 0,40, população-base, população inicial e populações sob seleção. Foram consideradas três gerações distintas como gerações bases, gerações zero (G0PB, três (G3PB e sete (G7PB. As populações foram selecionadas a partir dos valores genéticos obtidos pelo melhor preditor linear não-viesado (BLUP e com base no desempenho individual, sendo considerados: a dois tamanhos efetivos de população (Ne1 = 38,09 e Ne2 = 88,88 e b dois sistemas de acasalamentos dos reprodutores selecionados (reprodutores acasalados aleatoriamente - RAA e exclusão de irmãos completos - EIC. Os parâmetros avaliados foram: coeficiente médio de endogamia, percentagem de locos fixados favoravelmente e limite de seleção. A não-utilização da população-base verdadeira (G0PB subestimou os coeficientes de endogamia. As populações que utilizaram as gerações três e sete como base apresentaram as mesmas taxas de fixação de alelos favoráveis e os mesmos valores do limite de seleção das populações que consideraram a G0PB.Objective was to evaluate the behavior average inbreeding coefficient associated to the selection limit considering selected population as base population. GENESYS program was used for simulation of the genome (one trait of h² = 0.40, base population, initial population and populations under selection. Three different generations were considered as base generations, zero (G0PB, three (G3PB and seven (G7PB. Populations were selected based on best linear unbiased predictor (BLUP and on individual phenotype in which were considered: a two effective population sizes (Ne1 = 38.09 and Ne2 = 88.88 and b two mating systems (random mating

An updated dose assessment for resettlement options at Bikini Atoll--a U.S. nuclear test site.

Science.gov (United States)

Robison, W L; Bogen, K T; Conrado, C L

1997-07-01

On 1 March 1954, a nuclear weapon test, code-named BRAVO, conducted at Bikini Atoll in the northern Marshall Islands contaminated the major residence island. There has been a continuing effort since 1977 to refine dose assessments for resettlement options at Bikini Atoll. Here we provide a radiological dose assessment for the main residence island, Bikini, using extensive radionuclide concentration data derived from analysis of food crops, ground water, cistern water, fish and other marine species, animals, air, and soil collected at Bikini Island as part of our continuing research and monitoring program that began in 1978. The unique composition of coral soil greatly alters the relative contribution of 137Cs and 90Sr to the total estimated dose relative to expectations based on North American and European soils. Without counter measures, 137Cs produces 96% of the estimated dose for returning residents, mostly through uptake from the soil to terrestrial food crops but also from external gamma exposure. The doses are calculated assuming a resettlement date of 1999. The estimated maximum annual effective dose for current island conditions is 4.0 mSv when imported foods, which are now an established part of the diet, are available. The 30-, 50-, and 70-y integral effective doses are 91 mSv, 130 mSv, and 150 mSv, respectively. A detailed uncertainty analysis for these dose estimates is presented in a companion paper in this issue. We have evaluated various countermeasures to reduce 137Cs in food crops. Treatment with potassium reduces the uptake of 137Cs into food crops, and therefore the ingestion dose, to about 5% of pretreatment levels and has essentially no negative environmental consequences. We have calculated the dose for the rehabilitation scenario where the top 40 cm of soil is removed in the housing and village area, and the rest of the island is treated with potassium fertilizer; the maximum annual effective dose is 0.41 mSv and the 30-, 50-, and 70-y

Comparison of Three Plot Selection Methods for Estimating Change in Temporally Variable, Spatially Clustered Populations.

Energy Technology Data Exchange (ETDEWEB)

Thompson, William L. [Bonneville Power Administration, Portland, OR (US). Environment, Fish and Wildlife

2001-07-01

Monitoring population numbers is important for assessing trends and meeting various legislative mandates. However, sampling across time introduces a temporal aspect to survey design in addition to the spatial one. For instance, a sample that is initially representative may lose this attribute if there is a shift in numbers and/or spatial distribution in the underlying population that is not reflected in later sampled plots. Plot selection methods that account for this temporal variability will produce the best trend estimates. Consequently, I used simulation to compare bias and relative precision of estimates of population change among stratified and unstratified sampling designs based on permanent, temporary, and partial replacement plots under varying levels of spatial clustering, density, and temporal shifting of populations. Permanent plots produced more precise estimates of change than temporary plots across all factors. Further, permanent plots performed better than partial replacement plots except for high density (5 and 10 individuals per plot) and 25% - 50% shifts in the population. Stratified designs always produced less precise estimates of population change for all three plot selection methods, and often produced biased change estimates and greatly inflated variance estimates under sampling with partial replacement. Hence, stratification that remains fixed across time should be avoided when monitoring populations that are likely to exhibit large changes in numbers and/or spatial distribution during the study period. Key words: bias; change estimation; monitoring; permanent plots; relative precision; sampling with partial replacement; temporary plots.