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  1. Taxonomic evaluation of putative Streptomyces scabiei strains held in the ARS (NRRL) Culture Collection using multi-locus sequence analysis

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    Multi-locus sequence analysis has been demonstrated to be a useful tool for identification of Streptomyces species and was previously applied to phylogenetically differentiate the type strains of species pathogenic on potatoes (Solanum tuberosum L.). The ARS Culture Collection (NRRL) contains 43 str...

  2. Genotypic characterization by multi locus variable number of tandem repeats analysis international Bordetella pertussis vaccine strains

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    M. Fatah Moghadam

    2017-10-01

    Full Text Available Background: In 1930's first whole cell pertussis vaccines became available to the public heralding a dramatic success in overcoming the global burden of the disease. To date only a handful of B. pertussis strains have been used by international/local pertussis vaccine manufacturers. Inevitable well-documented genetic changes in the world population of this pathogen have prompted serious questions on suitability of traditional vaccine strains protect human against currently circulating wild isolates of Bordetella pertussis. Objective: Analyzing the genetic diversity within the most frequently-used vaccine strains of B. pertussis in the world Methods: A recently developed multi locus variable number of tandem repeats analysis (MLVA genotyping system along with a bioinforamtic piece of analysis was conducted on 11 strain / substrains of B137, B203 (10536, C393, Cs, E476, Tohama I, J445 (134, B202 and J446 (509 plus 2 sub-strains of 134 and 509 that are used at Razi institute for preparation of pertussis vaccine. In this study have used 6 individual loci of VNTR1, VNTR3a, VNTR3b, VNTR4, VNTR5 and VNTR6. Findings: Six distinct genotypes were recognized among the examined strains by comparing our data with the Dutch MLVA databank. These were all new and not reported before in the database. Conclusion: This observation reiterates on necessity for detection of predominant native strains to include in vaccine preparations suitable for different countries.

  3. Identification of Coxiella burnetii genotypes in Croatia using multi-locus VNTR analysis.

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    Račić, Ivana; Spičić, Silvio; Galov, Ana; Duvnjak, Sanja; Zdelar-Tuk, Maja; Vujnović, Anja; Habrun, Boris; Cvetnić, Zeljko

    2014-10-10

    Although Q fever affects humans and animals in Croatia, we are unaware of genotyping studies of Croatian strains of the causative pathogen Coxiella burnetii, which would greatly assist monitoring and control efforts. Here 3261 human and animal samples were screened for C. burnetii DNA by conventional PCR, and 335 (10.3%) were positive. Of these positive samples, 82 were genotyped at 17 loci using the relatively new method of multi-locus variable number tandem repeat analysis (MLVA). We identified 13 C. burnetii genotypes not previously reported anywhere in the world. Two of these 13 genotypes are typical of the continental part of Croatia and share more similarity with genotypes outside Croatia than with genotypes within the country. The remaining 11 novel genotypes are typical of the coastal part of Croatia and show more similarity to one another than to genotypes outside the country. Our findings shed new light on the phylogeny of C. burnetii strains and may help establish MLVA as a standard technique for Coxiella genotyping. Copyright © 2014 Elsevier B.V. All rights reserved.

  4. Adult height, coronary heart disease and stroke : A multi-locus Mendelian randomization meta-analysis

    NARCIS (Netherlands)

    Nüesch, Eveline; Dale, Caroline; Palmer, Tom M.; White, Jon; Keating, Brendan J.; van Iperen, Erik P A; Goel, Anuj; Padmanabhan, Sandosh; Asselbergs, F. W.; Verschuren, W. M.; Wijmenga, C.; Van der Schouw, Y. T.; Onland-Moret, N. C.; Lange, Leslie A.; Hovingh, G. K.; Sivapalaratnam, Suthesh; Morris, Richard W.; Whincup, Peter H.; Wannamethe, Goya S.; Gaunt, Tom R.; Ebrahim, Shah; Steel, Laura; Nair, Nikhil; Reiner, Alexander P.; Kooperberg, Charles; Wilson, James F.; Bolton, Jennifer L.; McLachlan, Stela; Price, Jacqueline F.; Strachan, Mark W J; Robertson, Christine M.; Kleber, Marcus E.; Delgado, Graciela; März, Winfried; Melander, Olle; Dominiczak, Anna F.; Farrall, Martin; Watkins, Hugh; Leusink, Maarten; Maitland-van der Zee, Anke H.; de Groot, Mark C H; Dudbridge, Frank; Hingorani, Aroon; Ben-Shlomo, Yoav; Lawlor, Debbie A.; Amuzu, A.; Caufield, M.; Cavadino, A.; Cooper, J.; Davies, T. L.; Day, I. N.; Drenos, F.; Engmann, J.; Finan, C.; Giambartolomei, C.; Hardy, R.; Humphries, S. E.; Hypponen, E.; Kivimaki, M.; Kuh, D.; Kumari, M.; Ong, K.; Plagnol, V.; Power, C.; Richards, M.; Shah, S.; Shah, T.; Sofat, R.; Talmud, P. J.; Wareham, N.; Warren, H.; Whittaker, J. C.; Wong, A.; Zabaneh, D.; Smith, George Davey; Wells, Jonathan C.; Leon, David A.; Holmes, Michael V.; Casas, Juan P.

    2016-01-01

    Background: We investigated causal effect of completed growth, measured by adult height, on coronary heart disease (CHD), stroke and cardiovascular traits, using instrumental variable (IV) Mendelian randomization meta-analysis. Methods: We developed an allele score based on 69 single nucleotide

  5. Multi-locus variable number tandem repeat analysis of 7th pandemic Vibrio cholerae

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    Lam Connie

    2012-05-01

    Full Text Available Abstract Background Seven pandemics of cholera have been recorded since 1817, with the current and ongoing pandemic affecting almost every continent. Cholera remains endemic in developing countries and is still a significant public health issue. In this study we use multilocus variable number of tandem repeats (VNTRs analysis (MLVA to discriminate between isolates of the 7th pandemic clone of Vibrio cholerae. Results MLVA of six VNTRs selected from previously published data distinguished 66 V. cholerae isolates collected between 1961–1999 into 60 unique MLVA profiles. Only 4 MLVA profiles consisted of more than 2 isolates. The discriminatory power was 0.995. Phylogenetic analysis showed that, except for the closely related profiles, the relationships derived from MLVA profiles were in conflict with that inferred from Single Nucleotide Polymorphism (SNP typing. The six SNP groups share consensus VNTR patterns and two SNP groups contained isolates which differed by only one VNTR locus. Conclusions MLVA is highly discriminatory in differentiating 7th pandemic V. cholerae isolates and MLVA data was most useful in resolving the genetic relationships among isolates within groups previously defined by SNPs. Thus MLVA is best used in conjunction with SNP typing in order to best determine the evolutionary relationships among the 7th pandemic V. cholerae isolates and for longer term epidemiological typing.

  6. A multi locus variable number of tandem repeat analysis (MLVA scheme for Streptococcus agalactiae genotyping

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    Mereghetti Laurent

    2011-07-01

    Full Text Available Abstract Background Multilocus sequence typing (MLST is currently the reference method for genotyping Streptococcus agalactiae strains, the leading cause of infectious disease in newborns and a major cause of disease in immunocompromised children and adults. We describe here a genotyping method based on multiple locus variable number of tandem repeat (VNTR analysis (MLVA applied to a population of S. agalactiae strains of various origins characterized by MLST and serotyping. Results We studied a collection of 186 strains isolated from humans and cattle and three reference strains (A909, NEM316 and 2603 V/R. Among 34 VNTRs, 6 polymorphic VNTRs loci were selected for use in genotyping of the bacterial population. The MLVA profile consists of a series of allele numbers, corresponding to the number of repeats at each VNTR locus. 98 MLVA genotypes were obtained compared to 51 sequences types generated by MLST. The MLVA scheme generated clusters which corresponded well to the main clonal complexes obtained by MLST. However it provided a higher discriminatory power. The diversity index obtained with MLVA was 0.960 compared to 0.881 with MLST for this population of strains. Conclusions The MLVA scheme proposed here is a rapid, cheap and easy genotyping method generating results suitable for exchange and comparison between different laboratories and for the epidemiologic surveillance of S. agalactiae and analyses of outbreaks.

  7. Assessment of MultiLocus Sequence Analysis As a Valuable Tool for the Classification of the Genus Salinivibrio

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    Clara López-Hermoso

    2017-06-01

    Full Text Available The genus Salinivibrio includes obligatory halophilic bacteria and is commonly isolated from hypersaline habitats and salted food products. They grow optimally between 7.5 and 10% salts and are facultative anaerobes. Currently, this genus comprises four species, one of them, S. costicola, with three subspecies. In this study we isolated and characterized an additional 70 strains from solar salterns located in different locations. Comparative 16S rRNA gene sequence analysis identified these strains as belonging to the genus Salinivibrio but could not differentiate strains into species-like groups. To achieve finer phylogenetic resolution, we carried out a MultiLocus Sequence Analysis (MLSA of the new isolates and the type strains of the species of Salinivibrio based on the individual as well as concatenated sequences of four housekeeping genes: gyrB, recA, rpoA, and rpoD. The strains formed four clearly differentiated species-like clusters called phylogroups. All of the known type and subspecies strains were associated with one of these clusters except S. sharmensis. One phylogroup had no previously described species coupled to it. Further DNA–DNA hybridization (DDH experiments with selected representative strains from these phylogroups permitted us to validate the MLSA study, correlating the species level defined by the DDH (70% with a 97% cut-off for the concatenated MLSA gene sequences. Based on these criteria, the novel strains forming phylogroup 1 could constitute a new species while strains constructing the other three phylogroups are members of previously recognized Salinivibrio species. S. costicola subsp. vallismortis co-occurs with S. proteolyticus in phylogroup 4, and separately from other S. costicola strains, indicating its need for reclassification. On the other hand, genome fingerprinting analysis showed that the environmental strains do not form clonal populations and did not cluster according to their site of cultivation. In

  8. Brucella 'HOOF-Prints': strain typing by multi-locus analysis of variable number tandem repeats (VNTRs

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    Halling Shirley M

    2003-07-01

    Full Text Available Abstract Background Currently, there are very few tools available for subtyping Brucella isolates for epidemiological trace-back. Subtyping is difficult because of the genetic homogeneity within the genus. Sequencing of the genomes from three Brucella species has facilitated the search for DNA sequence variability. Recently, hypervariability among short tandem repeat sequences has been exploited for strain-typing of several bacterial pathogens. Results An eight-base pair tandem repeat sequence was discovered in nine genomic loci of the B. abortus genome. Eight loci were hypervariable among the three Brucella species. A PCR-based method was developed to identify the number of repeat units (alleles at each locus, generating strain-specific fingerprints. None of the loci exhibited species- or biovar-specific alleles. Sometimes, a species or biovar contained a specific allele at one or more loci, but the allele also occurred in other species or biovars. The technique successfully differentiated the type strains for all Brucella species and biovars, among unrelated B. abortus biovar 1 field isolates in cattle, and among B. abortus strains isolated from bison and elk. Isolates from the same herd or from short-term in vitro passage exhibited little or no variability in fingerprint pattern. Sometimes, isolates from an animal would have multiple alleles at a locus, possibly from mixed infections in enzootic areas, residual disease from incomplete depopulation of an infected herd or molecular evolution within the strain. Therefore, a mixed population or a pool of colonies from each animal and/or tissue was tested. Conclusion This paper describes a new method for fingerprinting Brucella isolates based on multi-locus characterization of a variable number, eight-base pair, tandem repeat. We have named this technique "HOOF-Prints" for Hypervariable Octameric Oligonucleotide Finger-Prints. The technique is highly discriminatory among Brucella species, among

  9. A New Perspective on Polyploid Fragaria (Strawberry) Genome Composition Based on Large-Scale, Multi-Locus Phylogenetic Analysis

    OpenAIRE

    Yang, Yilong; Davis, Thomas M

    2017-01-01

    Abstract The subgenomic compositions of the octoploid (2n = 8× = 56) strawberry (Fragaria) species, including the economically important cultivated species Fragaria x ananassa, have been a topic of long-standing interest. Phylogenomic approaches utilizing next-generation sequencing technologies offer a new window into species relationships and the subgenomic compositions of polyploids. We have conducted a large-scale phylogenetic analysis of Fragaria (strawberry) species using the Fluidigm Ac...

  10. Multi-locus variable-number tandem repeat analysis of Chinese Brucella strains isolated from 1953 to 2013.

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    Tian, Guo-Zhong; Cui, Bu-Yun; Piao, Dong-Ri; Zhao, Hong-Yan; Li, Lan-Yu; Liu, Xi; Xiao, Pei; Zhao, Zhong-Zhi; Xu, Li-Qing; Jiang, Hai; Li, Zhen-Jun

    2017-05-02

    Brucellosis was a common human and livestock disease caused by Brucella strains, the category B priority pathogens by the US Center for Disease Control (CDC). Identified as a priority disease in human and livestock populations, the increasing incidence in recent years in China needs urgent control measures for this disease but the molecular background important for monitoring the epidemiology of Brucella strains at the national level is still lacking. A total of 600 Brucella isolates collected during 60 years (from 1953 to 2013) in China were genotyped by multiple locus variable-number tandem repeat analysis (MLVA) and the variation degree of MLVA11 loci was calculated by the Hunter Gaston Diversity Index (HGDI) values. The charts and map were processed by Excel 2013, and cluster analysis and epidemiological distribution was performed using BioNumerics (version 5.1). The 600 representative Brucella isolates fell into 104 genotypes with 58 singleton genotypes by the MLVA11 assay, including B. melitensis biovars 2 and 3 (five main genotypes), B. abortus biovars 1 and 3 (two main genotypes), B. suis biovars 1 and 3 (three main genotypes), and B. canis (two main genotypes) respectively. While most B. suis biovar 1 and biovar 3 were respectively found in northern provinces and southern provinces, B. melitensis and B. abortus strains were dominant in China. Canine Brucellosis was only found in animals without any human cases reported. Eight Brucellosis epidemic peaks emerged during the 60 years between 1953 and 2013: 1955 - 1959, 1962 - 1969, 1971 - 1975, 1977 - 1983, 1985 - 1989, 1992 - 1997, 2000 - 2008 and 2010 - 2013 in China. Brucellosis has its unique molecular epidemiological patterns with specific spatial and temporal distribution according to MLVA. IDOP-D-16-00101.

  11. A New Perspective on Polyploid Fragaria (Strawberry) Genome Composition Based on Large-Scale, Multi-Locus Phylogenetic Analysis.

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    Yang, Yilong; Davis, Thomas M

    2017-12-01

    The subgenomic compositions of the octoploid (2n = 8× = 56) strawberry (Fragaria) species, including the economically important cultivated species Fragaria x ananassa, have been a topic of long-standing interest. Phylogenomic approaches utilizing next-generation sequencing technologies offer a new window into species relationships and the subgenomic compositions of polyploids. We have conducted a large-scale phylogenetic analysis of Fragaria (strawberry) species using the Fluidigm Access Array system and 454 sequencing platform. About 24 single-copy or low-copy nuclear genes distributed across the genome were amplified and sequenced from 96 genomic DNA samples representing 16 Fragaria species from diploid (2×) to decaploid (10×), including the most extensive sampling of octoploid taxa yet reported. Individual gene trees were constructed by different tree-building methods. Mosaic genomic structures of diploid Fragaria species consisting of sequences at different phylogenetic positions were observed. Our findings support the presence in octoploid species of genetic signatures from at least five diploid ancestors (F. vesca, F. iinumae, F. bucharica, F. viridis, and at least one additional allele contributor of unknown identity), and questions the extent to which distinct subgenomes are preserved over evolutionary time in the allopolyploid Fragaria species. In addition, our data support divergence between the two wild octoploid species, F. virginiana and F. chiloensis. © The Author 2017. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

  12. Sub-typing of extended-spectrum-β-lactamase-producing isolates from a nosocomial outbreak: application of a 10-loci generic Escherichia coli multi-locus variable number tandem repeat analysis.

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    Nahid Karami

    Full Text Available Extended-spectrum β-lactamase producing Escherichia coli (ESBL-E. coli were isolated from infants hospitalized in a neonatal, post-surgery ward during a four-month-long nosocomial outbreak and six-month follow-up period. A multi-locus variable number tandem repeat analysis (MLVA, using 10 loci (GECM-10, for 'generic' (i.e., non-STEC E. coli was applied for sub-species-level (i.e., sub-typing delineation and characterization of the bacterial isolates. Ten distinct GECM-10 types were detected among 50 isolates, correlating with the types defined by pulsed-field gel electrophoresis (PFGE, which is recognized to be the 'gold-standard' method for clinical epidemiological analyses. Multi-locus sequence typing (MLST, multiplex PCR genotyping of bla CTX-M, bla TEM, bla OXA and bla SHV genes and antibiotic resistance profiling, as well as a PCR assay specific for detecting isolates of the pandemic O25b-ST131 strain, further characterized the outbreak isolates. Two clusters of isolates with distinct GECM-10 types (G06-04 and G07-02, corresponding to two major PFGE types and the MLST-based sequence types (STs 131 and 1444, respectively, were confirmed to be responsible for the outbreak. The application of GECM-10 sub-typing provided reliable, rapid and cost-effective epidemiological characterizations of the ESBL-producing isolates from a nosocomial outbreak that correlated with and may be used to replace the laborious PFGE protocol for analyzing generic E. coli.

  13. MultiLocus Sequence Analysis- and Amplified Fragment Length Polymorphism-based characterization of xanthomonads associated with bacterial spot of tomato and pepper and their relatedness to Xanthomonas species.

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    Hamza, A A; Robene-Soustrade, I; Jouen, E; Lefeuvre, P; Chiroleu, F; Fisher-Le Saux, M; Gagnevin, L; Pruvost, O

    2012-05-01

    MultiLocus Sequence Analysis (MLSA) and Amplified Fragment Length Polymorphism (AFLP) were used to measure the genetic relatedness of a comprehensive collection of xanthomonads pathogenic to solaneous hosts to Xanthomonas species. The MLSA scheme was based on partial sequences of four housekeeping genes (atpD, dnaK, efp and gyrB). Globally, MLSA data unambiguously identified strains causing bacterial spot of tomato and pepper at the species level and was consistent with AFLP data. Genetic distances derived from both techniques showed a close relatedness of (i) X. euvesicatoria, X. perforans and X. alfalfae and (ii) X. gardneri and X. cynarae. Maximum likelihood tree topologies derived from each gene portion and the concatenated data set for species in the X. campestris 16S rRNA core (i.e. the species cluster comprising all strains causing bacterial spot of tomato and pepper) were not congruent, consistent with the detection of several putative recombination events in our data sets by several recombination search algorithms. One recombinant region in atpD was identified in most strains of X. euvesicatoria including the type strain. Copyright © 2012 Elsevier GmbH. All rights reserved.

  14. Application of multi-locus analytical methods to identify interacting loci in case-control studies.

    NARCIS (Netherlands)

    Vermeulen, S.; Heijer, M. den; Sham, P.; Knight, J.

    2007-01-01

    To identify interacting loci in genetic epidemiological studies the application of multi-locus methods of analysis is warranted. Several more advanced classification methods have been developed in the past years, including multiple logistic regression, sum statistics, logic regression, and the

  15. A multi-locus plastid phylogenetic analysis of the pantropical genus Diospyros (Ebenaceae), with an emphasis on the radiation and biogeographic origins of the New Caledonian endemic species

    OpenAIRE

    Duangjai, S.; Samuel, R.; Munzinger, Jérôme; Forest, F.; Wallnofer, B.; Barfuss, M.H.J.; Fischer, G.; Chase, M. W.

    2009-01-01

    We aimed to clarify phylogenetic relationships within the pantropical genus Diospyros (Ebenaceae sensu lato), and ascertain biogeographical patterns in the New Caledonian endemic species. We used DNA sequences from eight plastid regions (rbcL, atpB, matK, ndhF, trnK intron, trnL intron, trnL-trnF spacer, and trnS-trnG spacer) and included 149 accessions representing 119 Diospyros species in our analysis. Results from this study confirmed the monophyly of Diospyros with good support and provid...

  16. A multi-locus plastid phylogenetic analysis of the pantropical genus Diospyros (Ebenaceae), with an emphasis on the radiation and biogeographic origins of the New Caledonian endemic species.

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    Duangjai, Sutee; Samuel, Rosabelle; Munzinger, Jérôme; Forest, Félix; Wallnöfer, Bruno; Barfuss, Michael H J; Fischer, Gunter; Chase, Mark W

    2009-09-01

    We aimed to clarify phylogenetic relationships within the pantropical genus Diospyros (Ebenaceae sensulato), and ascertain biogeographical patterns in the New Caledonian endemic species. We used DNA sequences from eight plastid regions (rbcL, atpB, matK, ndhF, trnK intron, trnL intron, trnL-trnF spacer, and trnS-trnG spacer) and included 149 accessions representing 119 Diospyros species in our analysis. Results from this study confirmed the monophyly of Diospyros with good support and provided a clearer picture of the relationships within the genus than in previous studies. Evidence from phylogenetic analyses suggests that Diospyros colonized New Caledonia multiple times. The four lineages of Diospyros in New Caledonia also differ in their degree of diversification. The molecular data indicate that one lineage is paleoendemic and derived from an ancient Australian species. The other three lineages are more closely related to several Southeast Asian species; two of them are neoendemics, and one has radiated rapidly and recently.

  17. Evaluation of a highly discriminating multiplex multi-locus variable-number of tandem-repeats (MLVA) analysis for Vibrio cholerae.

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    Olsen, Jaran S; Aarskaug, Tone; Skogan, Gunnar; Fykse, Else Marie; Ellingsen, Anette Bauer; Blatny, Janet M

    2009-09-01

    Vibrio cholerae is the etiological agent of cholera and may be used in bioterror actions due to the easiness of its dissemination, and the public fear for acquiring the cholera disease. A simple and highly discriminating method for connecting clinical and environmental isolates of V. cholerae is needed in microbial forensics. Twelve different loci containing variable numbers of tandem-repeats (VNTRs) were evaluated in which six loci were polymorphic. Two multiplex reactions containing PCR primers targeting these six VNTRs resulted in successful DNA amplification of 142 various environmental and clinical V. cholerae isolates. The genetic distribution inside the V. cholerae strain collection was used to evaluate the discriminating power (Simpsons Diversity Index=0.99) of this new MLVA analysis, showing that the assay have a potential to differentiate between various strains, but also to identify those isolates which are collected from a common V. cholerae outbreak. This work has established a rapid and highly discriminating MLVA assay useful for track back analyses and/or forensic studies of V. cholerae infections.

  18. A multi-locus phylogenetic evaluation of Diaporthe (Phomopsis)

    NARCIS (Netherlands)

    Udayanga, D.; Liu, X.; Crous, P.W.; McKenzie, E.H.C.; Chukeatirote, E.; Hyde, K.D.

    2012-01-01

    The genus Diaporthe (Phomopsis) includes important plant pathogenic fungi with wide host ranges and geographic distributions. In the present study, phylogenetic species recognition in Diaporthe is re-evaluated using a multi-locus phylogeny based on a combined data matrix of rDNA ITS, and partial

  19. Multi-locus estimates of population structure and migration in a fence lizard hybrid zone.

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    Adam D Leaché

    Full Text Available A hybrid zone between two species of lizards in the genus Sceloporus (S. cowlesi and S. tristichus on the Mogollon Rim in Arizona provides a unique opportunity to study the processes of lineage divergence and merging. This hybrid zone involves complex interactions between 2 morphologically and ecologically divergent subspecies, 3 chromosomal groups, and 4 mitochondrial DNA (mtDNA clades. The spatial patterns of divergence between morphology, chromosomes and mtDNA are discordant, and determining which of these character types (if any reflects the underlying population-level lineages that are of interest has remained impeded by character conflict. The focus of this study is to estimate the number of populations interacting in the hybrid zone using multi-locus nuclear data, and to then estimate the migration rates and divergence time between the inferred populations. Multi-locus estimates of population structure and gene flow were obtained from 12 anonymous nuclear loci sequenced for 93 specimens of Sceloporus. Population structure estimates support two populations, and this result is robust to changes to the prior probability distribution used in the Bayesian analysis and the use of spatially-explicit or non-spatial models. A coalescent analysis of population divergence suggests that gene flow is high between the two populations, and that the timing of divergence is restricted to the Pleistocene. The hybrid zone is more accurately described as involving two populations belonging to S. tristichus, and the presence of S. cowlesi mtDNA haplotypes in the hybrid zone is an anomaly resulting from mitochondrial introgression.

  20. Investigation of genetic diversity and epidemiological characteristics of Pasteurella multocida isolates from poultry in southwest China by population structure, multi-locus sequence typing and virulence-associated gene profile analysis.

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    Li, Zhangcheng; Cheng, Fangjun; Lan, Shimei; Guo, Jianhua; Liu, Wei; Li, Xiaoyan; Luo, Zeli; Zhang, Manli; Wu, Juan; Shi, Yang

    2018-04-25

    Fowl cholera caused by Pasteurella multocida has always been a disease of global importance for poultry production. The aim of this study was to obtain more information about the epidemiology of avian P. multocida infection in southwest China and the genetic characteristics of clinical isolates. P. multocida isolates were characterized by biochemical and molecular-biological methods. The distributions of the capsular serogroups, the phenotypic antimicrobial resistance profiles, lipopolysaccharide (LPS) genotyping and the presence of 19 virulence genes were investigated in 45 isolates of P. multocida that were associated with clinical disease in poultry. The genetic diversity of P. multocida strains was performed by 16S rRNA and rpoB gene sequence analysis as well as multilocus sequence typing (MLST). The results showed that most (80.0%) of the P. multocida isolates in this study represented special P. multocida subspecies, and 71.1% of the isolates showed multiple-drug resistance. 45 isolates belonged to capsular types: A (100%) and two LPS genotypes: L1 (95.6%) and L3 (4.4%). MLST revealed two new alleles (pmi77 and gdh57) and one new sequence type (ST342). ST129 types dominated in 45 P. multocida isolates. Isolates belonging to ST129 were with the genes ompH+plpB+ptfA+tonB, whereas ST342 included isolates with fur+hgbA+tonB genes. Population genetic analysis and the MLST results revealed that at least one new ST genotype was present in the avian P. multocida in China. These findings provide novel insights into the epidemiological characteristics of avian P. multocida isolates in southwest China.

  1. Genotyping of B. licheniformis based on a novel multi-locus sequence typing (MLST scheme

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    Madslien Elisabeth H

    2012-10-01

    Full Text Available Abstract Background Bacillus licheniformis has for many years been used in the industrial production of enzymes, antibiotics and detergents. However, as a producer of dormant heat-resistant endospores B. licheniformis might contaminate semi-preserved foods. The aim of this study was to establish a robust and novel genotyping scheme for B. licheniformis in order to reveal the evolutionary history of 53 strains of this species. Furthermore, the genotyping scheme was also investigated for its use to detect food-contaminating strains. Results A multi-locus sequence typing (MLST scheme, based on the sequence of six house-keeping genes (adk, ccpA, recF, rpoB, spo0A and sucC of 53 B. licheniformis strains from different sources was established. The result of the MLST analysis supported previous findings of two different subgroups (lineages within this species, named “A” and “B” Statistical analysis of the MLST data indicated a higher rate of recombination within group “A”. Food isolates were widely dispersed in the MLST tree and could not be distinguished from the other strains. However, the food contaminating strain B. licheniformis NVH1032, represented by a unique sequence type (ST8, was distantly related to all other strains. Conclusions In this study, a novel and robust genotyping scheme for B. licheniformis was established, separating the species into two subgroups. This scheme could be used for further studies of evolution and population genetics in B. licheniformis.

  2. Multi-locus variable-number tandem repeat profiling of Salmonella enterica serovar Typhi isolates from blood cultures and gallbladder specimens from Makassar, South-Sulawesi, Indonesia.

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    Mochammad Hatta

    Full Text Available Multi-locus variable-number tandem repeat analysis differentiated 297 Salmonella enterica serovar Typhi blood culture isolates from Makassar in 76 genotypes and a single unique S. Typhi genotype was isolated from the cholecystectomy specimens of four patients with cholelithiasis. The high diversity in S. Typhi genotypes circulating in Makassar indicates that the number of carriers could be very large, which may complicate disease prevention and control.

  3. Integration of least angle regression with empirical Bayes for multi-locus genome-wide association studies

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    Multi-locus genome-wide association studies has become the state-of-the-art procedure to identify quantitative trait loci (QTL) associated with traits simultaneously. However, implementation of multi-locus model is still difficult. In this study, we integrated least angle regression with empirical B...

  4. Systematic characterization of Bacillus Genetic Stock Center Bacillus thuringiensis strains using Multi-Locus Sequence Typing.

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    Wang, Kui; Shu, Changlong; Soberón, Mario; Bravo, Alejandra; Zhang, Jie

    2018-04-30

    The goal of this work was to perform a systematic characterization of Bacillus thuringiensis (Bt) strains from the Bacillus Genetic Stock Center (BGSC) collection using Multi-Locus Sequence Typing (MLST). Different genetic markers of 158 Bacillus thuringiensis (Bt) strains from 73 different serovars stored in the BGSC, that represented 92% of the different Bt serovars of the BGSC were analyzed, the 8% that were not analyzed were not available. In addition, we analyzed 72 Bt strains from 18 serovars available at the pubMLST bcereus database, and Bt strains G03, HBF18 and Bt185, with no H serovars provided by our laboratory. We performed a systematic MLST analysis using seven housekeeping genes (glpF, gmK, ilvD, pta, pur, pycA and tpi) and analyzed correlation of the results of this analysis with strain serovars. The 233 Bt strains analyzed were assigned to 119 STs from which 19 STs were new. Genetic relationships were established by phylogenetic analysis and showed that STs could be grouped in two major Clusters containing 21 sub-groups. We found that a significant number of STs (101 in total) correlated with specific serovars, such as ST13 that corresponded to nine Bt isolates from B. thuringiensis serovar kenyae. However, other serovars showed high genetic variability and correlated with multiple STs; for example, B. thuringiensis serovar morrisoni correlated with 11 different STs. In addition, we found that 16 different STs correlated with multiple serovars (2-4 different serovars); for example, ST12 correlated with B. thuringiensis serovar alesti, dakota, palmanyolensis and sotto/dendrolimus. These data indicated that only partial correspondence between MLST and serotyping can be established. Copyright © 2018 Elsevier Inc. All rights reserved.

  5. Unravelling the Molecular Epidemiology and Genetic Diversity among Burkholderia pseudomallei Isolates from South India Using Multi-Locus Sequence Typing.

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    Tellapragada, Chaitanya; Kamthan, Aayushi; Shaw, Tushar; Ke, Vandana; Kumar, Subodh; Bhat, Vinod; Mukhopadhyay, Chiranjay

    2016-01-01

    There is a slow but steady rise in the case detection rates of melioidosis from various parts of the Indian sub-continent in the past two decades. However, the epidemiology of the disease in India and the surrounding South Asian countries remains far from well elucidated. Multi-locus sequence typing (MLST) is a useful epidemiological tool to study the genetic relatedness of bacterial isolates both with-in and across the countries. With this background, we studied the molecular epidemiology of 32 Burkholderia pseudomallei isolates (31 clinical and 1 soil isolate) obtained during 2006-2015 from various parts of south India using multi-locus sequencing typing and analysis. Of the 32 isolates included in the analysis, 30 (93.7%) had novel allelic profiles that were not reported previously. Sequence type (ST) 1368 (n = 15, 46.8%) with allelic profile (1, 4, 6, 4, 1, 1, 3) was the most common genotype observed. We did not observe a genotypic association of STs with geographical location, type of infection and year of isolation in the present study. Measure of genetic differentiation (FST) between Indian and the rest of world isolates was 0.14413. Occurrence of the same ST across three adjacent states of south India suggest the dispersion of B.pseudomallei across the south western coastal part of India with limited geographical clustering. However, majority of the STs reported from the present study remained as "outliers" on the eBURST "Population snapshot", suggesting the genetic diversity of Indian isolates from the Australasian and Southeast Asian isolates.

  6. Unravelling the Molecular Epidemiology and Genetic Diversity among Burkholderia pseudomallei Isolates from South India Using Multi-Locus Sequence Typing.

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    Chaitanya Tellapragada

    Full Text Available There is a slow but steady rise in the case detection rates of melioidosis from various parts of the Indian sub-continent in the past two decades. However, the epidemiology of the disease in India and the surrounding South Asian countries remains far from well elucidated. Multi-locus sequence typing (MLST is a useful epidemiological tool to study the genetic relatedness of bacterial isolates both with-in and across the countries. With this background, we studied the molecular epidemiology of 32 Burkholderia pseudomallei isolates (31 clinical and 1 soil isolate obtained during 2006-2015 from various parts of south India using multi-locus sequencing typing and analysis. Of the 32 isolates included in the analysis, 30 (93.7% had novel allelic profiles that were not reported previously. Sequence type (ST 1368 (n = 15, 46.8% with allelic profile (1, 4, 6, 4, 1, 1, 3 was the most common genotype observed. We did not observe a genotypic association of STs with geographical location, type of infection and year of isolation in the present study. Measure of genetic differentiation (FST between Indian and the rest of world isolates was 0.14413. Occurrence of the same ST across three adjacent states of south India suggest the dispersion of B.pseudomallei across the south western coastal part of India with limited geographical clustering. However, majority of the STs reported from the present study remained as "outliers" on the eBURST "Population snapshot", suggesting the genetic diversity of Indian isolates from the Australasian and Southeast Asian isolates.

  7. Short read sequence typing (SRST: multi-locus sequence types from short reads

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    Inouye Michael

    2012-07-01

    Full Text Available Abstract Background Multi-locus sequence typing (MLST has become the gold standard for population analyses of bacterial pathogens. This method focuses on the sequences of a small number of loci (usually seven to divide the population and is simple, robust and facilitates comparison of results between laboratories and over time. Over the last decade, researchers and population health specialists have invested substantial effort in building up public MLST databases for nearly 100 different bacterial species, and these databases contain a wealth of important information linked to MLST sequence types such as time and place of isolation, host or niche, serotype and even clinical or drug resistance profiles. Recent advances in sequencing technology mean it is increasingly feasible to perform bacterial population analysis at the whole genome level. This offers massive gains in resolving power and genetic profiling compared to MLST, and will eventually replace MLST for bacterial typing and population analysis. However given the wealth of data currently available in MLST databases, it is crucial to maintain backwards compatibility with MLST schemes so that new genome analyses can be understood in their proper historical context. Results We present a software tool, SRST, for quick and accurate retrieval of sequence types from short read sets, using inputs easily downloaded from public databases. SRST uses read mapping and an allele assignment score incorporating sequence coverage and variability, to determine the most likely allele at each MLST locus. Analysis of over 3,500 loci in more than 500 publicly accessible Illumina read sets showed SRST to be highly accurate at allele assignment. SRST output is compatible with common analysis tools such as eBURST, Clonal Frame or PhyloViz, allowing easy comparison between novel genome data and MLST data. Alignment, fastq and pileup files can also be generated for novel alleles. Conclusions SRST is a novel

  8. Multi locus sequence typing of Chlamydiales: clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis.

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    Pannekoek, Yvonne; Morelli, Giovanna; Kusecek, Barica; Morré, Servaas A; Ossewaarde, Jacobus M; Langerak, Ankie A; van der Ende, Arie

    2008-02-28

    The obligate intracellular growing bacterium Chlamydia trachomatis causes diseases like trachoma, urogenital infection and lymphogranuloma venereum with severe morbidity. Several serovars and genotypes have been identified, but these could not be linked to clinical disease or outcome. The related Chlamydophila pneumoniae, of which no subtypes are recognized, causes respiratory infections worldwide. We developed a multi locus sequence typing (MLST) scheme to understand the population genetic structure and diversity of these species and to evaluate the association between genotype and disease. A collection of 26 strains of C. trachomatis of different serovars and clinical presentation and 18 strains of C. pneumoniae were included in the study. For comparison, sequences of C. abortus, C. psittaci, C. caviae, C. felis, C. pecorum (Chlamydophila), C. muridarum (Chlamydia) and of Candidatus protochlamydia and Simkania negevensis were also included. Sequences of fragments (400 - 500 base pairs) from seven housekeeping genes (enoA, fumC, gatA, gidA, hemN, hlfX, oppA) were analysed. Analysis of allelic profiles by eBurst revealed three non-overlapping clonal complexes among the C. trachomatis strains, while the C. pneumoniae strains formed a single group. An UPGMA tree produced from the allelic profiles resulted in three groups of sequence types. The LGV strains grouped in a single cluster, while the urogenital strains were distributed over two separated groups, one consisted solely of strains with frequent occurring serovars (E, D and F). The distribution of the different serovars over the three groups was not consistent, suggesting exchange of serovar encoding ompA sequences. In one instance, exchange of fumC sequences between strains of different groups was observed. Cluster analyses of concatenated sequences of the Chlamydophila and Chlamydia species together with those of Candidatus Protochlamydia amoebophila and Simkania negevensis resulted in a tree identical to that

  9. Multi locus sequence typing of Chlamydiales: clonal groupings within the obligate intracellular bacteria Chlamydia trachomatis

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    Langerak Ankie A

    2008-02-01

    Full Text Available Abstract Background The obligate intracellular growing bacterium Chlamydia trachomatis causes diseases like trachoma, urogenital infection and lymphogranuloma venereum with severe morbidity. Several serovars and genotypes have been identified, but these could not be linked to clinical disease or outcome. The related Chlamydophila pneumoniae, of which no subtypes are recognized, causes respiratory infections worldwide. We developed a multi locus sequence typing (MLST scheme to understand the population genetic structure and diversity of these species and to evaluate the association between genotype and disease. Results A collection of 26 strains of C. trachomatis of different serovars and clinical presentation and 18 strains of C. pneumoniae were included in the study. For comparison, sequences of C. abortus, C. psittaci, C. caviae, C. felis, C. pecorum (Chlamydophila, C. muridarum (Chlamydia and of Candidatus protochlamydia and Simkania negevensis were also included. Sequences of fragments (400 – 500 base pairs from seven housekeeping genes (enoA, fumC, gatA, gidA, hemN, hlfX, oppA were analysed. Analysis of allelic profiles by eBurst revealed three non-overlapping clonal complexes among the C. trachomatis strains, while the C. pneumoniae strains formed a single group. An UPGMA tree produced from the allelic profiles resulted in three groups of sequence types. The LGV strains grouped in a single cluster, while the urogenital strains were distributed over two separated groups, one consisted solely of strains with frequent occurring serovars (E, D and F. The distribution of the different serovars over the three groups was not consistent, suggesting exchange of serovar encoding ompA sequences. In one instance, exchange of fumC sequences between strains of different groups was observed. Cluster analyses of concatenated sequences of the Chlamydophila and Chlamydia species together with those of Candidatus Protochlamydia amoebophila and Simkania

  10. Multi-locus sequence typing of Bartonella henselae isolates from three continents reveals hypervirulent and feline-associated clones.

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    Mardjan Arvand

    Full Text Available Bartonella henselae is a zoonotic pathogen and the causative agent of cat scratch disease and a variety of other disease manifestations in humans. Previous investigations have suggested that a limited subset of B. henselae isolates may be associated with human disease. In the present study, 182 human and feline B. henselae isolates from Europe, North America and Australia were analysed by multi-locus sequence typing (MLST to detect any associations between sequence type (ST, host species and geographical distribution of the isolates. A total of 14 sequence types were detected, but over 66% (16/24 of the isolates recovered from human disease corresponded to a single genotype, ST1, and this type was detected in all three continents. In contrast, 27.2% (43/158 of the feline isolates corresponded to ST7, but this ST was not recovered from humans and was restricted to Europe. The difference in host association of STs 1 (human and 7 (feline was statistically significant (P< or =0.001. eBURST analysis assigned the 14 STs to three clonal lineages, which contained two or more STs, and a singleton comprising ST7. These groups were broadly consistent with a neighbour-joining tree, although splits decomposition analysis was indicative of a history of recombination. These data indicate that B. henselae lineages differ in their virulence properties for humans and contribute to a better understanding of the population structure of B. henselae.

  11. Comparative genomic assessment of Multi-Locus Sequence Typing: rapid accumulation of genomic heterogeneity among clonal isolates of Campylobacter jejuni

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    Nash John HE

    2008-08-01

    Full Text Available Abstract Background Multi-Locus Sequence Typing (MLST has emerged as a leading molecular typing method owing to its high ability to discriminate among bacterial isolates, the relative ease with which data acquisition and analysis can be standardized, and the high portability of the resulting sequence data. While MLST has been successfully applied to the study of the population structure for a number of different bacterial species, it has also provided compelling evidence for high rates of recombination in some species. We have analyzed a set of Campylobacter jejuni strains using MLST and Comparative Genomic Hybridization (CGH on a full-genome microarray in order to determine whether recombination and high levels of genomic mosaicism adversely affect the inference of strain relationships based on the analysis of a restricted number of genetic loci. Results Our results indicate that, in general, there is significant concordance between strain relationships established by MLST and those based on shared gene content as established by CGH. While MLST has significant predictive power with respect to overall genome similarity of isolates, we also found evidence for significant differences in genomic content among strains that would otherwise appear to be highly related based on their MLST profiles. Conclusion The extensive genomic mosaicism between closely related strains has important implications in the context of establishing strain to strain relationships because it suggests that the exact gene content of strains, and by extension their phenotype, is less likely to be "predicted" based on a small number of typing loci. This in turn suggests that a greater emphasis should be placed on analyzing genes of clinical interest as we forge ahead with the next generation of molecular typing methods.

  12. Sea Fighter Analysis

    Science.gov (United States)

    2007-02-01

    which is used by the model to drive the normal activities of the crew (Figure C.1-2). These routines consist of a sequential list of high- level...separately. Figure C.1-3: Resources & Logic Sheet C.1.1.4 Scenario The scenario that is performed during a model run is a sequential list of all...were marked with a white fore and aft lineup stripe on both landing spots. Current Sea Fighter design does not provide a hangar; however, there

  13. Genetic Dissection of Maize Embryonic Callus Regenerative Capacity Using Multi-Locus Genome-Wide Association Studies

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    Langlang Ma

    2018-04-01

    Full Text Available The regenerative capacity of the embryonic callus, a complex quantitative trait, is one of the main limiting factors for maize transformation. This trait was decomposed into five traits, namely, green callus rate (GCR, callus differentiating rate (CDR, callus plantlet number (CPN, callus rooting rate (CRR, and callus browning rate (CBR. To dissect the genetic foundation of maize transformation, in this study multi-locus genome-wide association studies (GWAS for the five traits were performed in a population of 144 inbred lines genotyped with 43,427 SNPs. Using the phenotypic values in three environments and best linear unbiased prediction (BLUP values, as a result, a total of 127, 56, 160, and 130 significant quantitative trait nucleotides (QTNs were identified by mrMLM, FASTmrEMMA, ISIS EM-BLASSO, and pLARmEB, respectively. Of these QTNs, 63 QTNs were commonly detected, including 15 across multiple environments and 58 across multiple methods. Allele distribution analysis showed that the proportion of superior alleles for 36 QTNs was <50% in 31 elite inbred lines. Meanwhile, these superior alleles had obviously additive effect on the regenerative capacity. This indicates that the regenerative capacity-related traits can be improved by proper integration of the superior alleles using marker-assisted selection. Moreover, a total of 40 candidate genes were found based on these common QTNs. Some annotated genes were previously reported to relate with auxin transport, cell fate, seed germination, or embryo development, especially, GRMZM2G108933 (WOX2 was found to promote maize transgenic embryonic callus regeneration. These identified candidate genes will contribute to a further understanding of the genetic foundation of maize embryonic callus regeneration.

  14. Molecular characterization and multi-locus genotypes of Enterocytozoon bieneusi from captive red kangaroos (Macropus Rufus in Jiangsu province, China.

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    Zhijun Zhong

    Full Text Available Enterocytozoon bieneusi is the most common pathogen of microsporidian species infecting humans worldwide. Although E. bieneusi has been found in a variety of animal hosts, information on the presence of E. bieneusi in captive kangaroos in China is limited. The present study was aimed at determining the occurrence and genetic diversity of E. bieneusi in captive kangaroos. A total of 61 fecal specimens (38 from red kangaroos and 23 from grey kangaroos were collected from Nanjing Hongshan Forest Zoo and Hongshan Kangaroo Breeding Research Base, Jiangsu province, China. Using the nested PCR amplification ITS gene of rRNA of E. bieneusi, totally 23.0% (14/61 of tested samples were PCR-positive with three genotypes (i.e. one known genotype, CHK1, and two novel genotypes, CSK1 and CSK2. Multi-locus sequence typing using three microsatellites (MS1, MS3, and MS7 and one minisatellite (MS4 revealed one, five, two, and one types at these four loci, respectively. In phylogenetic analysis, the two genotypes, CHK1 and CSK1, were clustered into a new group of unknown zoonotic potential, and the novel genotype CSK2 was clustered into a separate clade with PtEb and PtEbIX. To date, this is the first report on the presence of E. bieneusi in captive red kangaroos in Jiangsu province, China. Furthermore, a high degree of genetic diversity was observed in the E. bieneusi genotype and seven MLGs (MLG1-7 were found in red kangaroos. Our findings suggest that infected kangaroo may act as potential reservoirs of E. bieneusi and be source to transmit infections to other animal.

  15. Multi locus sequence typing of Chlamydia reveals an association between Chlamydia psittaci genotypes and host species.

    Science.gov (United States)

    Pannekoek, Yvonne; Dickx, Veerle; Beeckman, Delphine S A; Jolley, Keith A; Keijzers, Wendy C; Vretou, Evangelia; Maiden, Martin C J; Vanrompay, Daisy; van der Ende, Arie

    2010-12-02

    Chlamydia comprises a group of obligate intracellular bacterial parasites responsible for a variety of diseases in humans and animals, including several zoonoses. Chlamydia trachomatis causes diseases such as trachoma, urogenital infection and lymphogranuloma venereum with severe morbidity. Chlamydia pneumoniae is a common cause of community-acquired respiratory tract infections. Chlamydia psittaci, causing zoonotic pneumonia in humans, is usually hosted by birds, while Chlamydia abortus, causing abortion and fetal death in mammals, including humans, is mainly hosted by goats and sheep. We used multi-locus sequence typing to asses the population structure of Chlamydia. In total, 132 Chlamydia isolates were analyzed, including 60 C. trachomatis, 18 C. pneumoniae, 16 C. abortus, 34 C. psittaci and one of each of C. pecorum, C. caviae, C. muridarum and C. felis. Cluster analyses utilizing the Neighbour-Joining algorithm with the maximum composite likelihood model of concatenated sequences of 7 housekeeping fragments showed that C. psittaci 84/2334 isolated from a parrot grouped together with the C. abortus isolates from goats and sheep. Cluster analyses of the individual alleles showed that in all instances C. psittaci 84/2334 formed one group with C. abortus. Moving 84/2334 from the C. psittaci group to the C. abortus group resulted in a significant increase in the number of fixed differences and elimination of the number of shared mutations between C. psittaci and C. abortus. C. psittaci M56 from a muskrat branched separately from the main group of C. psittaci isolates. C. psittaci genotypes appeared to be associated with host species. The phylogenetic tree of C. psittaci did not follow that of its host bird species, suggesting host species jumps. In conclusion, we report for the first time an association between C. psittaci genotypes with host species.

  16. Development and evaluation of a multi-locus sequence typing scheme for Mycoplasma synoviae.

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    Dijkman, R; Feberwee, A; Landman, W J M

    2016-08-01

    Reproducible molecular Mycoplasma synoviae typing techniques with sufficient discriminatory power may help to expand knowledge on its epidemiology and contribute to the improvement of control and eradication programmes of this mycoplasma species. The present study describes the development and validation of a novel multi-locus sequence typing (MLST) scheme for M. synoviae. Thirteen M. synoviae isolates originating from different poultry categories, farms and lesions, were subjected to whole genome sequencing. Their sequences were compared to that of M. synoviae reference strain MS53. A high number of single nucleotide polymorphisms (SNPs) indicating considerable genetic diversity were identified. SNPs were present in over 40 putative target genes for MLST of which five target genes were selected (nanA, uvrA, lepA, ruvB and ugpA) for the MLST scheme. This scheme was evaluated analysing 209 M. synoviae samples from different countries, categories of poultry, farms and lesions. Eleven clonal clusters and 76 different sequence types (STs) were obtained. Clustering occurred following geographical origin, supporting the hypothesis of regional population evolution. M. synoviae samples obtained from epidemiologically linked outbreaks often harboured the same ST. In contrast, multiple M. synoviae lineages were found in samples originating from swollen joints or oviducts from hens that produce eggs with eggshell apex abnormalities indicating that further research is needed to identify the genetic factors of M. synoviae that may explain its variations in tissue tropism and disease inducing potential. Furthermore, MLST proved to have a higher discriminatory power compared to variable lipoprotein and haemagglutinin A typing, which generated 50 different genotypes on the same database.

  17. Multi locus sequence typing of Chlamydia reveals an association between Chlamydia psittaci genotypes and host species.

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    Yvonne Pannekoek

    2010-12-01

    Full Text Available Chlamydia comprises a group of obligate intracellular bacterial parasites responsible for a variety of diseases in humans and animals, including several zoonoses. Chlamydia trachomatis causes diseases such as trachoma, urogenital infection and lymphogranuloma venereum with severe morbidity. Chlamydia pneumoniae is a common cause of community-acquired respiratory tract infections. Chlamydia psittaci, causing zoonotic pneumonia in humans, is usually hosted by birds, while Chlamydia abortus, causing abortion and fetal death in mammals, including humans, is mainly hosted by goats and sheep. We used multi-locus sequence typing to asses the population structure of Chlamydia. In total, 132 Chlamydia isolates were analyzed, including 60 C. trachomatis, 18 C. pneumoniae, 16 C. abortus, 34 C. psittaci and one of each of C. pecorum, C. caviae, C. muridarum and C. felis. Cluster analyses utilizing the Neighbour-Joining algorithm with the maximum composite likelihood model of concatenated sequences of 7 housekeeping fragments showed that C. psittaci 84/2334 isolated from a parrot grouped together with the C. abortus isolates from goats and sheep. Cluster analyses of the individual alleles showed that in all instances C. psittaci 84/2334 formed one group with C. abortus. Moving 84/2334 from the C. psittaci group to the C. abortus group resulted in a significant increase in the number of fixed differences and elimination of the number of shared mutations between C. psittaci and C. abortus. C. psittaci M56 from a muskrat branched separately from the main group of C. psittaci isolates. C. psittaci genotypes appeared to be associated with host species. The phylogenetic tree of C. psittaci did not follow that of its host bird species, suggesting host species jumps. In conclusion, we report for the first time an association between C. psittaci genotypes with host species.

  18. Use of multi-locus sequencing typing as identification method for the food-borne pathogen Listeria monocytogenes: a review

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    Sonia Lamon

    2015-01-01

    Full Text Available Listeria monocytogenes is an ubiquitous, intracellular pathogen which has been implicated within the past decade as the causative organism in several outbreaks of foodborne diseases. In this review, a new approach to molecular typing primarily designed for global epidemiology has been described: multi-locus sequencing typing (MLST. This approach is novel, in that it uses data that allow the unambiguous characterization of bacterial strains via the Internet. Our aim is to present the currently available selection of references on L. monocytogenes MLST detection methods and to discuss its use as gold standard to L. monocytogenes subtyping method.

  19. Integrative taxonomy by molecular species delimitation: multi-locus data corroborate a new species of Balkan Drusinae micro-endemics.

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    Vitecek, Simon; Kučinić, Mladen; Previšić, Ana; Živić, Ivana; Stojanović, Katarina; Keresztes, Lujza; Bálint, Miklós; Hoppeler, Felicitas; Waringer, Johann; Graf, Wolfram; Pauls, Steffen U

    2017-06-06

    Taxonomy offers precise species identification and delimitation and thus provides basic information for biological research, e.g. through assessment of species richness. The importance of molecular taxonomy, i.e., the identification and delimitation of taxa based on molecular markers, has increased in the past decade. Recently developed exploratory tools now allow estimating species-level diversity in multi-locus molecular datasets. Here we use molecular species delimitation tools that either quantify differences in intra- and interspecific variability of loci, or divergence times within and between species, or perform coalescent species tree inference to estimate species-level entities in molecular genetic datasets. We benchmark results from these methods against 14 morphologically readily differentiable species of a well-defined subgroup of the diverse Drusinae subfamily (Trichoptera, Limnephilidae). Using a 3798 bp (6 loci) molecular data set we aim to corroborate a geographically isolated new species by integrating comparative morphological studies and molecular taxonomy. Our results indicate that only multi-locus species delimitation provides taxonomically relevant information. The data further corroborate the new species Drusus zivici sp. nov. We provide differential diagnostic characters and describe the male, female and larva of this new species and discuss diversity patterns of Drusinae in the Balkans. We further discuss potential and significance of molecular species delimitation. Finally we argue that enhancing collaborative integrative taxonomy will accelerate assessment of global diversity and completion of reference libraries for applied fields, e.g., conservation and biomonitoring.

  20. Multi-locus sequence typing provides epidemiological insights for diseased sharks infected with fungi belonging to the Fusarium solani species complex.

    Science.gov (United States)

    Desoubeaux, Guillaume; Debourgogne, Anne; Wiederhold, Nathan P; Zaffino, Marie; Sutton, Deanna; Burns, Rachel E; Frasca, Salvatore; Hyatt, Michael W; Cray, Carolyn

    2018-07-01

    Fusarium spp. are saprobic moulds that are responsible for severe opportunistic infections in humans and animals. However, we need epidemiological tools to reliably trace the circulation of such fungal strains within medical or veterinary facilities, to recognize environmental contaminations that might lead to infection and to improve our understanding of factors responsible for the onset of outbreaks. In this study, we used molecular genotyping to investigate clustered cases of Fusarium solani species complex (FSSC) infection that occurred in eight Sphyrnidae sharks under managed care at a public aquarium. Genetic relationships between fungal strains were determined by multi-locus sequence typing (MLST) analysis based on DNA sequencing at five loci, followed by comparison with sequences of 50 epidemiologically unrelated FSSC strains. Our genotyping approach revealed that F. keratoplasticum and F. solani haplotype 9x were most commonly isolated. In one case, the infection proved to be with another Hypocrealian rare opportunistic pathogen Metarhizium robertsii. Twice, sharks proved to be infected with FSSC strains with the same MLST sequence type, supporting the hypothesis the hypothesis that common environmental populations of fungi existed for these sharks and would suggest the longtime persistence of the two clonal strains within the environment, perhaps in holding pools and life support systems of the aquarium. This study highlights how molecular tools like MLST can be used to investigate outbreaks of microbiological disease. This work reinforces the need for regular controls of water quality to reduce microbiological contamination due to waterborne microorganisms.

  1. Taxonomic evaluation of Streptomyces hirsutus and related species using multi-locus sequence analysis

    Science.gov (United States)

    Phylogenetic analyses of species of Streptomyces based on 16S rRNA gene sequences resulted in a statistically well-supported clade (100% bootstrap value) containing 8 species having very similar gross morphology. These species, including Streptomyces bambergiensis, Streptomyces chlorus, Streptomyces...

  2. Development and validation of a multi-locus DNA metabarcoding method to identify endangered species in complex samples.

    Science.gov (United States)

    Arulandhu, Alfred J; Staats, Martijn; Hagelaar, Rico; Voorhuijzen, Marleen M; Prins, Theo W; Scholtens, Ingrid; Costessi, Adalberto; Duijsings, Danny; Rechenmann, François; Gaspar, Frédéric B; Barreto Crespo, Maria Teresa; Holst-Jensen, Arne; Birck, Matthew; Burns, Malcolm; Haynes, Edward; Hochegger, Rupert; Klingl, Alexander; Lundberg, Lisa; Natale, Chiara; Niekamp, Hauke; Perri, Elena; Barbante, Alessandra; Rosec, Jean-Philippe; Seyfarth, Ralf; Sovová, Tereza; Van Moorleghem, Christoff; van Ruth, Saskia; Peelen, Tamara; Kok, Esther

    2017-10-01

    DNA metabarcoding provides great potential for species identification in complex samples such as food supplements and traditional medicines. Such a method would aid Convention on International Trade in Endangered Species of Wild Fauna and Flora (CITES) enforcement officers to combat wildlife crime by preventing illegal trade of endangered plant and animal species. The objective of this research was to develop a multi-locus DNA metabarcoding method for forensic wildlife species identification and to evaluate the applicability and reproducibility of this approach across different laboratories. A DNA metabarcoding method was developed that makes use of 12 DNA barcode markers that have demonstrated universal applicability across a wide range of plant and animal taxa and that facilitate the identification of species in samples containing degraded DNA. The DNA metabarcoding method was developed based on Illumina MiSeq amplicon sequencing of well-defined experimental mixtures, for which a bioinformatics pipeline with user-friendly web-interface was developed. The performance of the DNA metabarcoding method was assessed in an international validation trial by 16 laboratories, in which the method was found to be highly reproducible and sensitive enough to identify species present in a mixture at 1% dry weight content. The advanced multi-locus DNA metabarcoding method assessed in this study provides reliable and detailed data on the composition of complex food products, including information on the presence of CITES-listed species. The method can provide improved resolution for species identification, while verifying species with multiple DNA barcodes contributes to an enhanced quality assurance. © The Authors 2017. Published by Oxford University Press.

  3. Multi-locus genotypes of Enterocytozoon bieneusi in captive Asiatic black bears in southwestern China: High genetic diversity, broad host range, and zoonotic potential.

    Science.gov (United States)

    Deng, Lei; Li, Wei; Zhong, Zhijun; Gong, Chao; Cao, Xuefeng; Song, Yuan; Wang, Wuyou; Huang, Xiangming; Liu, Xuehan; Hu, Yanchun; Fu, Hualin; He, Min; Wang, Ya; Zhang, Yue; Wu, Kongju; Peng, Guangneng

    2017-01-01

    Enterocytozoon bieneusi is an obligate eukaryotic intracellular parasite that infects a wide variety of vertebrate and invertebrate hosts. Although considerable research has been conducted on this organism, relatively little information is available on the occurrence of E. bieneusi in captive Asiatic black bears. The present study was performed to determine the prevalence, genetic diversity, and zoonotic potential of E. bieneusi in captive Asiatic black bears in zoos in southwestern China. Fecal specimens from Asiatic black bears in four zoos, located in four different cities, were collected and analyzed for the prevalence of E. bieneusi. The average prevalence of E. bieneusi was 27.4% (29/106), with the highest prevalence in Guiyang Zoo (36.4%, 16/44). Altogether, five genotypes of E. bieneusi were identified among the 29 E. bieneusi-positive samples, including three known genotypes (CHB1, SC02, and horse2) and two novel genotypes named ABB1 and ABB2. Multi-locus sequence typing using three microsatellites (MS1, MS3, and MS7) and one minisatellite (MS4) revealed V, III, V, and IV genotypes at these four loci, respectively. Phylogenetic analysis showed that the genotypes SC02 and ABB2 were clustered into group 1 of zoonotic potential, the genotypes CHB1 and ABB1 were clustered into a new group, and the genotype horse2 was clustered into group 6 of unclear zoonotic potential. In conclusion, this study identified two novel E. bieneusi genotypes in captive Asiatic black bears, and used microsatellite and minisatellite markers to reveal E. bieneusi genetic diversity. Moreover, our findings show that genotypes SC02 (identified in humans) and ABB2 belong to group 1 with zoonotic potential, suggesting the risk of transmission of E. bieneusi from Asiatic black bears to humans and other animals.

  4. Multi-locus genotypes of Enterocytozoon bieneusi in captive Asiatic black bears in southwestern China: High genetic diversity, broad host range, and zoonotic potential.

    Directory of Open Access Journals (Sweden)

    Lei Deng

    Full Text Available Enterocytozoon bieneusi is an obligate eukaryotic intracellular parasite that infects a wide variety of vertebrate and invertebrate hosts. Although considerable research has been conducted on this organism, relatively little information is available on the occurrence of E. bieneusi in captive Asiatic black bears. The present study was performed to determine the prevalence, genetic diversity, and zoonotic potential of E. bieneusi in captive Asiatic black bears in zoos in southwestern China. Fecal specimens from Asiatic black bears in four zoos, located in four different cities, were collected and analyzed for the prevalence of E. bieneusi. The average prevalence of E. bieneusi was 27.4% (29/106, with the highest prevalence in Guiyang Zoo (36.4%, 16/44. Altogether, five genotypes of E. bieneusi were identified among the 29 E. bieneusi-positive samples, including three known genotypes (CHB1, SC02, and horse2 and two novel genotypes named ABB1 and ABB2. Multi-locus sequence typing using three microsatellites (MS1, MS3, and MS7 and one minisatellite (MS4 revealed V, III, V, and IV genotypes at these four loci, respectively. Phylogenetic analysis showed that the genotypes SC02 and ABB2 were clustered into group 1 of zoonotic potential, the genotypes CHB1 and ABB1 were clustered into a new group, and the genotype horse2 was clustered into group 6 of unclear zoonotic potential. In conclusion, this study identified two novel E. bieneusi genotypes in captive Asiatic black bears, and used microsatellite and minisatellite markers to reveal E. bieneusi genetic diversity. Moreover, our findings show that genotypes SC02 (identified in humans and ABB2 belong to group 1 with zoonotic potential, suggesting the risk of transmission of E. bieneusi from Asiatic black bears to humans and other animals.

  5. Is the extremely rare Iberian endemic plant species Castrilanthemum debeauxii (Compositae, Anthemideae) a 'living fossil'? Evidence from a multi-locus species tree reconstruction.

    Science.gov (United States)

    Tomasello, Salvatore; Álvarez, Inés; Vargas, Pablo; Oberprieler, Christoph

    2015-01-01

    The present study provides results of multi-species coalescent species tree analyses of DNA sequences sampled from multiple nuclear and plastid regions to infer the phylogenetic relationships among the members of the subtribe Leucanthemopsidinae (Compositae, Anthemideae), to which besides the annual Castrilanthemum debeauxii (Degen, Hervier & É.Rev.) Vogt & Oberp., one of the rarest flowering plant species of the Iberian Peninsula, two other unispecific genera (Hymenostemma, Prolongoa), and the polyploidy complex of the genus Leucanthemopsis belong. Based on sequence information from two single- to low-copy nuclear regions (C16, D35, characterised by Chapman et al. (2007)), the multi-copy region of the nrDNA internal transcribed spacer regions ITS1 and ITS2, and two intergenic spacer regions of the cpDNA gene trees were reconstructed using Bayesian inference methods. For the reconstruction of a multi-locus species tree we applied three different methods: (a) analysis of concatenated sequences using Bayesian inference (MrBayes), (b) a tree reconciliation approach by minimizing the number of deep coalescences (PhyloNet), and (c) a coalescent-based species-tree method in a Bayesian framework ((∗)BEAST). All three species tree reconstruction methods unequivocally support the close relationship of the subtribe with the hitherto unclassified genus Phalacrocarpum, the sister-group relationship of Castrilanthemum with the three remaining genera of the subtribe, and the further sister-group relationship of the clade of Hymenostemma+Prolongoa with a monophyletic genus Leucanthemopsis. Dating of the (∗)BEAST phylogeny supports the long-lasting (Early Miocene, 15-22Ma) taxonomical independence and the switch from the plesiomorphic perennial to the apomorphic annual life-form assumed for the Castrilanthemum lineage that may have occurred not earlier than in the Pliocene (3Ma) when the establishment of a Mediterranean climate with summer droughts triggered evolution towards

  6. Pulsed-field gel electrophoresis and multi locus sequence typing for characterizing genotype variability of Yersinia ruckeri isolated from farmed fish in France.

    Science.gov (United States)

    Calvez, Ségolène; Fournel, Catherine; Douet, Diane-Gaëlle; Daniel, Patrick

    2015-06-23

    Yersinia ruckeri is a pathogen that has an impact on aquaculture worldwide. The disease caused by this bacterial species, yersiniosis or redmouth disease, generates substantial economic losses due to the associated mortality and veterinary costs. For predicting outbreaks and improving control strategies, it is important to characterize the population structure of the bacteria. The phenotypic and genetic homogeneities described previously indicate a clonal population structure as observed in other fish bacteria. In this study, the pulsed-field gel electrophoresis (PFGE) and multi locus sequence typing (MLST) methods were used to describe a population of isolates from outbreaks on French fish farms. For the PFGE analysis, two enzymes (NotI and AscI) were used separately and together. Results from combining the enzymes showed the great homogeneity of the outbreak population with a similarity > 80.0% but a high variability within the cluster (cut-off value = 80.0%) with a total of 43 pulsotypes described and an index of diversity = 0.93. The dominant pulsotypes described with NotI (PtN4 and PtN7) have already been described in other European countries (Finland, Germany, Denmark, Spain and Italy). The MLST approach showed two dominant sequence types (ST31 and ST36), an epidemic structure of the French Y. ruckeri population and a preferentially clonal evolution for rainbow trout isolates. Our results point to multiple types of selection pressure on the Y. ruckeri population attributable to geographical origin, ecological niche specialization and movements of farmed fish.

  7. Multi-locus phylogeny reveals instances of mitochondrial introgression and unrecognized diversity in Kenyan barbs (Cyprininae: Smiliogastrini).

    Science.gov (United States)

    Schmidt, Ray C; Bart, Henry L; Nyingi, Wanja Dorothy

    2017-06-01

    The phylogenetics and taxonomic status of small African barbs (Cyprininae: Smiliogastrini) remains unresolved despite the recent decision to elevate the genus name Enteromius for the group. The main barrier to understanding the origin of African small barbs and evolutionary relationships within the group is the poor resolution of phylogenies published to date. These phylogenies usually rely on mitochondrial markers and have limited taxon sampling. Here we investigate the phylogenetic relationships of small barbs of Kenya utilizing cytochrome b, Growth Hormone (GH) intron 2, and RAG1 markers from multiple populations of many species in the region. This multi-locus study produced well-supported phylogenies and revealed additional issues that complicate understanding the relationships among East African barbs. We observed widespread mtDNA introgression within the Kenyan barbs, highlighting the need to include nuclear markers in phylogenetic studies of the group. The GH intron 2 resolved heterospecific individuals and aided in inferring the species level phylogeny. The study reveals unrecognized diversity within the group, including within species reported to occur throughout East Africa, and it provides the groundwork for future taxonomic work in the region and across Africa. Copyright © 2017 Elsevier Inc. All rights reserved.

  8. Evaluation of two multi-locus sequence typing schemes for commensal Escherichia coli from dairy cattle in Washington State.

    Science.gov (United States)

    Ahmed, Sara; Besser, Thomas E; Call, Douglas R; Weissman, Scott J; Jones, Lisa P; Davis, Margaret A

    2016-05-01

    Multi-locus sequence typing (MLST) is a useful system for phylogenetic and epidemiological studies of multidrug-resistant Escherichiacoli. Most studies utilize a seven-locus MLST, but an alternate two-locus typing method (fumC and fimH; CH typing) has been proposed that may offer a similar degree of discrimination at lower cost. Herein, we compare CH typing to the standard seven-locus method for typing commensal E. coli isolates from dairy cattle. In addition, we evaluated alternative combinations of eight loci to identify combinations that maximize discrimination and congruence with standard seven-locus MLST among commensal E. coli while minimizing the cost. We also compared both methods when used for typing uropathogenic E. coli (UPEC). CH typing was less discriminatory for commensal E. coli than the standard seven-locus method (Simpson's Index of Diversity=0.933 [0.902-0.964] and 0.97 [0.96-0.979], respectively). Combining fimH with housekeeping gene loci improved discriminatory power for commensal E. coli from cattle but resulted in poor congruence with MLST. We found that a four-locus typing method including the housekeeping genes adk, purA, gyrB and recA could be used to minimize cost without sacrificing discriminatory power or congruence with Achtman seven-locus MLST when typing commensal E. coli. Copyright © 2016 Elsevier B.V. All rights reserved.

  9. Serotypes, antibiotic susceptibilities, and multi-locus sequence type profiles of Streptococcus agalactiae isolates circulating in Beijing, China.

    Science.gov (United States)

    Wang, Ping; Tong, Jing-jing; Ma, Xiu-hua; Song, Feng-li; Fan, Ling; Guo, Cui-mei; Shi, Wei; Yu, Sang-jie; Yao, Kai-hu; Yang, Yong-hong

    2015-01-01

    To investigate the serotypes, antibiotic susceptibilities, and multi-locus sequence type (MLST) profiles of Streptococcus agalactiae (S. agalactiae) in Beijing to provide references for the prevention and treatment of S. agalactiae infections. All isolates were identified using the CAMP test and the latex-agglutination assay and serotyped using a Strep-B-Latex kit, after which they were assessed for antibiotic susceptibility, macrolide-resistance genes, and MLST profiles. In total, 56 S. agalactiae isolates were identified in 863 pregnant women (6.5%). Serotypes Ia, Ib, II, III, and V were identified, among which types III (32.1%), Ia (17.9%), Ib (16.1%), and V (14.3%) were the predominant serotypes. All isolates were susceptible to penicillin and ceftriaxone. The nonsusceptiblity rates measured for erythromycin, clarithromycin, azithromycin, telithromycin, clindamycin, tetracycline, and levofloxacin were 85.7%, 92.9%, 98.2%, 30.4%, 73.2%, 91%, and 39.3%, respectively. We identified 14 sequence types (STs) for the 56 isolates, among which ST19 (30.4%) was predominant. The rate of fluoroquinolone resistance was higher in serotype III than in the other serotypes. Among the 44 erythromycin-resistant isolates, 32 (72.7%) carried ermB. S. agalactiae isolates of the serotypes Ia, Ib, III, and V are common in Beijing. Among the S. agalactiae isolates, the macrolide and clindamycin resistance rates are extremely high. Most of the erythromycin-resistant isolates carry ermB.

  10. GHRSST Level 4 DMI_OI North Sea and Baltic Sea Regional Foundation Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis by the Danish...

  11. New Tools for Sea Ice Data Analysis and Visualization: NSIDC's Arctic Sea Ice News and Analysis

    Science.gov (United States)

    Vizcarra, N.; Stroeve, J.; Beam, K.; Beitler, J.; Brandt, M.; Kovarik, J.; Savoie, M. H.; Skaug, M.; Stafford, T.

    2017-12-01

    Arctic sea ice has long been recognized as a sensitive climate indicator and has undergone a dramatic decline over the past thirty years. Antarctic sea ice continues to be an intriguing and active field of research. The National Snow and Ice Data Center's Arctic Sea Ice News & Analysis (ASINA) offers researchers and the public a transparent view of sea ice data and analysis. We have released a new set of tools for sea ice analysis and visualization. In addition to Charctic, our interactive sea ice extent graph, the new Sea Ice Data and Analysis Tools page provides access to Arctic and Antarctic sea ice data organized in seven different data workbooks, updated daily or monthly. An interactive tool lets scientists, or the public, quickly compare changes in ice extent and location. Another tool allows users to map trends, anomalies, and means for user-defined time periods. Animations of September Arctic and Antarctic monthly average sea ice extent and concentration may also be accessed from this page. Our tools help the NSIDC scientists monitor and understand sea ice conditions in near real time. They also allow the public to easily interact with and explore sea ice data. Technical innovations in our data center helped NSIDC quickly build these tools and more easily maintain them. The tools were made publicly accessible to meet the desire from the public and members of the media to access the numbers and calculations that power our visualizations and analysis. This poster explores these tools and how other researchers, the media, and the general public are using them.

  12. Analysis of Sea Level Rise in Action

    Science.gov (United States)

    Gill, K. M.; Huang, T.; Quach, N. T.; Boening, C.

    2016-12-01

    NASA's Sea Level Change Portal provides scientists and the general public with "one-stop" source for current sea level change information and data. Sea Level Rise research is a multidisciplinary research and in order to understand its causes, scientists must be able to access different measurements and to be able to compare them. The portal includes an interactive tool, called the Data Analysis Tool (DAT), for accessing, visualizing, and analyzing observations and models relevant to the study of Sea Level Rise. Using NEXUS, an open source, big data analytic technology developed at the Jet Propulsion Laboratory, the DAT is able provide user on-the-fly data analysis on all relevant parameters. DAT is composed of three major components: A dedicated instance of OnEarth (a WMTS service), NEXUS deep data analytic platform, and the JPL Common Mapping Client (CMC) for web browser based user interface (UI). Utilizing the global imagery, a user is capable of browsing the data in a visual manner and isolate areas of interest for further study. The interfaces "Analysis" tool provides tools for area or point selection, single and/or comparative dataset selection, and a range of options, algorithms, and plotting. This analysis component utilizes the Nexus cloud computing platform to provide on-demand processing of the data within the user-selected parameters and immediate display of the results. A RESTful web API is exposed for users comfortable with other interfaces and who may want to take advantage of the cloud computing capabilities. This talk discuss how DAT enables on-the-fly sea level research. The talk will introduce the DAT with an end-to-end tour of the tool with exploration and animating of available imagery, a demonstration of comparative analysis and plotting, and how to share and export data along with images for use in publications/presentations. The session will cover what kind of data is available, what kind of analysis is possible, and what are the outputs.

  13. Multi-locus genotyping of bottom fermenting yeasts by single nucleotide polymorphisms indicative of brewing characteristics.

    Science.gov (United States)

    Ikushima, Shigehito; Tateishi, Yoshiyuki; Kanai, Keiko; Shimada, Emiko; Tanaka, Misa; Ishiguro, Tatsuji; Mizutani, Satoru; Kobayashi, Osamu

    2012-04-01

    Yeast plays a capital role in brewing fermentation and has a direct impact on flavor and aroma. For the evaluation of competent brewing strains during quality control or development of novel strains it is standard practice to perform fermentation tests, which are costly and time-consuming. Here, we have categorized DNA markers which enable to distinguish and to screen brewing strains more efficiently than ever before. Sequence analysis at 289 loci in the genomes of six bottom fermenting Saccharomyces pastorianus strains revealed that 30 loci contained single nucleotide polymorphisms (SNPs). By determining the nucleotide sequences at the SNP-loci in 26 other S. pastorianus strains and 20 strains of the top fermenting yeast Saccharomyces cerevisiae, almost all these strains could be discriminated solely on the basis of the SNPs. By comparing the fermentative phenotypes of these strains we found that some DNA markers showed a strong association with brewing characteristics, such as the production of ethyl acetate and hydrogen sulphide (H2S). Therefore, the DNA markers we identified will facilitate quality control and the efficient development of brewing yeast strains. Copyright © 2011 The Society for Biotechnology, Japan. Published by Elsevier B.V. All rights reserved.

  14. Diversification of the silverspot butterflies (Nymphalidae) in the Neotropics inferred from multi-locus DNA sequences.

    Science.gov (United States)

    Massardo, Darli; Fornel, Rodrigo; Kronforst, Marcus; Gonçalves, Gislene Lopes; Moreira, Gilson Rudinei Pires

    2015-01-01

    The tribe Heliconiini (Lepidoptera: Nymphalidae) is a diverse group of butterflies distributed throughout the Neotropics, which has been studied extensively, in particular the genus Heliconius. However, most of the other lineages, such as Dione, which are less diverse and considered basal within the group, have received little attention. Basic information, such as species limits and geographical distributions remain uncertain for this genus. Here we used multilocus DNA sequence data and the geographical distribution analysis across the entire range of Dione in the Neotropical region in order to make inferences on the evolutionary history of this poorly explored lineage. Bayesian time-tree reconstruction allows inferring two major diversification events in this tribe around 25mya. Lineages thought to be ancient, such as Dione and Agraulis, are as recent as Heliconius. Dione formed a monophyletic clade, sister to the genus Agraulis. Dione juno, D. glycera and D. moneta were reciprocally monophyletic and formed genetic clusters, with the first two more close related than each other in relation to the third. Divergence time estimates support the hypothesis that speciation in Dione coincided with both the rise of Passifloraceae (the host plants) and the uplift of the Andes. Since the sister species D. glycera and D. moneta are specialized feeders on passion-vine lineages that are endemic to areas located either within or adjacent to the Andes, we inferred that they co-speciated with their host plants during this vicariant event. Copyright © 2014 Elsevier Inc. All rights reserved.

  15. GHRSST Level 4 ODYSSEA Mediterranean Sea Regional Foundation Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at Ifremer/CERSAT...

  16. GHRSST Level 4 EUR Mediterranean Sea Regional Foundation Sea Surface Temperature Analysis (GDS version 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily by Ifremer/CERSAT (France) using optimal...

  17. A multi-locus molecular timescale for the origin and diversification of eels (Order: Anguilliformes).

    Science.gov (United States)

    Santini, Francesco; Kong, Xianghui; Sorenson, Laurie; Carnevale, Giorgio; Mehta, Rita S; Alfaro, Michael E

    2013-12-01

    Anguilliformes are an ecologically diverse group of predominantly marine fishes whose members are easily recognized by their extremely elongate bodies, and universal lack of pelvic fins. Recent studies based on mitochondrial loci, including full mitogenomes, have called into question the monophyly of both the Anguilliformes, which appear to be paraphyletic without the inclusion of the Saccopharyngiformes (gulper eels and allies), as well as other more commonly known eel families (e.g., Congridae, Serrivomeridae). However, no study to date has investigated anguilliform interrelationships using nuclear loci. Here we present a new phylogenetic hypothesis for the Anguilliformes based on five markers (the nuclear loci Early Growth Hormone 3, Myosin Heavy Polypeptide 6 and Recombinase Activating Gene 1, as well as the mitochondrial genes Cytochrome b and Cytochrome Oxidase I). Our sampling spans 148 species and includes 19 of the 20 extant families of anguilliforms and saccopharyngiforms. Maximum likelihood analysis reveals that saccopharyngiform eels are deeply nested within the anguilliforms, and supports the non-monophyly of Congridae and Nettastomatidae, as well as that of Derichthyidae and Chlopsidae. Our analyses suggest that Protanguilla may be the sister group of the Synaphobranchidae, though the recent hypothesis that this species is the sister group to all other anguilliforms cannot be rejected. The molecular phylogeny, time-calibrated using a Bayesian relaxed clock approach and seven fossil calibration points, reveals a Late Cretaceous origin of this expanded anguilliform clade (stem age ~116 Ma, crown age ~99 Ma). Most major (family level) lineages originated between the end of the Cretaceous and Early Eocene, suggesting that anguilliform radiation may have been facilitated by the recovery of marine ecosystems following the KP extinction. Copyright © 2013 Elsevier Inc. All rights reserved.

  18. Distribution and factors associated with Salmonella enterica genotypes in a diverse population of humans and animals in Qatar using multi-locus sequence typing (MLST).

    Science.gov (United States)

    Chang, Yu C; Scaria, Joy; Ibraham, Mariamma; Doiphode, Sanjay; Chang, Yung-Fu; Sultan, Ali; Mohammed, Hussni O

    2016-01-01

    Salmonella enterica is one of the most commonly reported causes of bacterial foodborne illness around the world. Understanding the sources of this pathogen and the associated factors that exacerbate its risk to humans will help in developing risk mitigation strategies. The genetic relatedness among Salmonella isolates recovered from human gastroenteritis cases and food animals in Qatar were investigated in the hope of shedding light on these sources, their possible transmission routes, and any associated factors. A repeat cross-sectional study was conducted in which the samples and associated data were collected from both populations (gastroenteritis cases and animals). Salmonella isolates were initially analyzed using multi-locus sequence typing (MLST) to investigate the genetic diversity and clonality. The relatedness among the isolates was assessed using the minimum spanning tree (MST). Twenty-seven different sequence types (STs) were identified in this study; among them, seven were novel, including ST1695, ST1696, ST1697, ST1698, ST1699, ST1702, and ST1703. The pattern of overall ST distribution was diverse; in particular, it was revealed that ST11 and ST19 were the most common sequence types, presenting 29.5% and 11.5% within the whole population. In addition, 20 eBurst Groups (eBGs) were identified in our data, which indicates that ST11 and ST19 belonged to eBG4 and eBG1, respectively. In addition, the potential association between the putative risk factors and eBGs were evaluated. There was no significant clustering of these eBGs by season; however, a significant association was identified in terms of nationality in that Qataris were six times more likely to present with eBG1 compared to non-Qataris. In the MST analysis, four major clusters were presented, namely, ST11, ST19, ST16, and ST31. The linkages between the clusters alluded to a possible transmission route. The results of the study have provided insight into the ST distributions of S. enterica and

  19. Molecular Methods for Typing of Streptococcus agalactiae with Special Emphasis on the Development and Validation of a Multi-Locus Variable Number of Tandem Repeats Assay (MLVA)

    OpenAIRE

    Radtke, Andreas

    2012-01-01

    Molekylære metoder for typing av Streptococcus agalactiae med særlig vektlegging av utvikling og validering av et multi-locus variable number of tandem repeats assay (MLVA) Sammendraget: Streptococcus agalactiae eller gruppe B streptokokker (GBS) forårsaker livsfarlige infeksjoner hos nyfødte, gravide eller voksne med kroniske sykdommer. Den forårsaker også jurbetennelse i storfe. Typing av GBS gir innblikk i bakteriens epidemiologi og dens fylogenetiske slektskap. Ulike deler av bakterie...

  20. Sea level rise and the geoid: factor analysis approach

    Directory of Open Access Journals (Sweden)

    Alexey Sadovski

    2013-08-01

    Full Text Available Sea levels are rising around the world, and this is a particular concern along most of the coasts of the United States. A 1989 EPA report shows that sea levels rose 5-6 inches more than the global average along the Mid-Atlantic and Gulf Coasts in the last century. The main reason for this is coastal land subsidence. This sea level rise is considered more as relative sea level rise than global sea level rise. Thus, instead of studying sea level rise globally, this paper describes a statistical approach by using factor analysis of regional sea level rates of change. Unlike physical models and semi-empirical models that attempt to approach how much and how fast sea levels are changing, this methodology allows for a discussion of the factor(s that statistically affects sea level rates of change, and seeks patterns to explain spatial correlations.

  1. pKWmEB: integration of Kruskal-Wallis test with empirical Bayes under polygenic background control for multi-locus genome-wide association study.

    Science.gov (United States)

    Ren, Wen-Long; Wen, Yang-Jun; Dunwell, Jim M; Zhang, Yuan-Ming

    2018-03-01

    Although nonparametric methods in genome-wide association studies (GWAS) are robust in quantitative trait nucleotide (QTN) detection, the absence of polygenic background control in single-marker association in genome-wide scans results in a high false positive rate. To overcome this issue, we proposed an integrated nonparametric method for multi-locus GWAS. First, a new model transformation was used to whiten the covariance matrix of polygenic matrix K and environmental noise. Using the transferred model, Kruskal-Wallis test along with least angle regression was then used to select all the markers that were potentially associated with the trait. Finally, all the selected markers were placed into multi-locus model, these effects were estimated by empirical Bayes, and all the nonzero effects were further identified by a likelihood ratio test for true QTN detection. This method, named pKWmEB, was validated by a series of Monte Carlo simulation studies. As a result, pKWmEB effectively controlled false positive rate, although a less stringent significance criterion was adopted. More importantly, pKWmEB retained the high power of Kruskal-Wallis test, and provided QTN effect estimates. To further validate pKWmEB, we re-analyzed four flowering time related traits in Arabidopsis thaliana, and detected some previously reported genes that were not identified by the other methods.

  2. A heavy sea fog event over the Yellow Sea in March 2005: Analysis and numerical modeling

    Science.gov (United States)

    Gao, Shanhong; Lin, Hang; Shen, Biao; Fu, Gang

    2007-02-01

    In this paper, a heavy sea fog episode that occurred over the Yellow Sea on 9 March 2005 is investigated. The sea fog patch, with a spatial scale of several hundred kilometers at its mature stage, reduced visibility along the Shandong Peninsula coast to 100 m or much less at some sites. Satellite images, surface observations and soundings at islands and coasts, and analyses from the Japan Meteorology Agency (JMA) are used to describe and analyze this event. The analysis indicates that this sea fog can be categorized as advection cooling fog. The main features of this sea fog including fog area and its movement are reasonably reproduced by the Fifth-generation Pennsylvania State University/National Center for Atmospheric Research Mesoscale Model (MM5). Model results suggest that the formation and evolution of this event can be outlined as: (1) southerly warm/moist advection of low-level air resulted in a strong sea-surface-based inversion with a thickness of about 600 m; (2) when the inversion moved from the warmer East Sea to the colder Yellow Sea, a thermal internal boundary layer (TIBL) gradually formed at the base of the inversion while the sea fog grew in response to cooling and moistening by turbulence mixing; (3) the sea fog developed as the TIBL moved northward and (4) strong northerly cold and dry wind destroyed the TIBL and dissipated the sea fog. The principal findings of this study are that sea fog forms in response to relatively persistent southerly warm/moist wind and a cold sea surface, and that turbulence mixing by wind shear is the primary mechanism for the cooling and moistening the marine layer. In addition, the study of sensitivity experiments indicates that deterministic numerical modeling offers a promising approach to the prediction of sea fog over the Yellow Sea but it may be more efficient to consider ensemble numerical modeling because of the extreme sensitivity to model input.

  3. Speciation of two gobioid species, Pterogobius elapoides and Pterogobius zonoleucus revealed by multi-locus nuclear and mitochondrial DNA analyses

    KAUST Repository

    Akihito; Akishinonomiya, Fumihito; Ikeda, Yuji; Aizawa, Masahiro; Nakagawa, So; Umehara, Yumi; Yonezawa, Takahiro; Mano, Shuhei; Hasegawa, Masami; Nakabo, Tetsuji; Gojobori, Takashi

    2015-01-01

    To understand how geographical differentiation of gobioid fish species led to speciation, two populations of the Pacific Ocean and the Sea of Japan for each of the two gobioid species, Pterogobius elapoides and Pterogobius zonoleucus, were studied

  4. Observational analysis of air-sea fluxes and sea water temperature offshore South China Sea

    Science.gov (United States)

    Bi, X.; Huang, J.; Gao, Z.; Liu, Y.

    2017-12-01

    This paper investigates the air-sea fluxes (momentum flux, sensible heat flux and latent heat flux) from eddy covariance method based on data collected at an offshore observation tower in the South China Sea from January 2009 to December 2016 and sea water temperature (SWT) on six different levels based on data collected from November 2011 to June 2013. The depth of water at the tower over the sea averages about 15 m. This study presents the in-situ measurements of continuous air-sea fluxes and SWT at different depths. Seasonal and diurnal variations in air-sea fluxes and SWT on different depths are examined. Results show that air-sea fluxes and all SWT changed seasonally; sea-land breeze circulation appears all the year round. Unlike winters where SWT on different depths are fairly consistent, the difference between sea surface temperature (SST) and sea temperature at 10 m water depth fluctuates dramatically and the maximum value reaches 7 °C during summer.

  5. Taxonomic evaluation of unidentified Streptomyces isolates in the ARS Culture Collection (NRRL) using multi-locus sequence analysis

    Science.gov (United States)

    The ARS Culture Collection (NRRL) currently contains 7569 strains within the family Streptomycetaceae but 4368 of them have not been characterized to the species level. A gene sequence database using the Bacterial Isolate Genomic Sequence Database package (BIGSdb) (Jolley & Maiden, 2010) is availabl...

  6. Multi-locus mixed model analysis of stem rust resistance in a worldwide collection of winter wheat

    Science.gov (United States)

    Genome-wide association mapping is a powerful tool for dissecting the relationship between phenotypes and genetic variants in diverse populations. With improved cost efficiency of high-throughput genotyping platforms, association mapping is a desirable method to mine populations for favorable allele...

  7. A novel HURRAH protocol reveals high numbers of monomorphic MHC class II loci and two asymmetric multi-locus haplotypes in the Père David's deer.

    Directory of Open Access Journals (Sweden)

    Qiu-Hong Wan

    Full Text Available The Père David's deer is a highly inbred, but recovered, species, making it interesting to consider their adaptive molecular evolution from an immunological perspective. Prior to this study, genomic sequencing was the only method for isolating all functional MHC genes within a certain species. Here, we report a novel protocol for isolating MHC class II loci from a species, and its use to investigate the adaptive evolution of this endangered deer at the level of multi-locus haplotypes. This protocol was designated "HURRAH" based on its various steps and used to estimate the total number of MHC class II loci. We confirmed the validity of this novel protocol in the giant panda and then used it to examine the Père David's deer. Our results revealed that the Père David's deer possesses nine MHC class II loci and therefore has more functional MHC class II loci than the eight genome-sequenced mammals for which full MHC data are currently available. This could potentially account at least in part for the strong survival ability of this species in the face of severe bottlenecking. The results from the HURRAH protocol also revealed that: (1 All of the identified MHC class II loci were monomorphic at their antigen-binding regions, although DRA was dimorphic at its cytoplasmic tail; and (2 these genes constituted two asymmetric functional MHC class II multi-locus haplotypes: DRA1*01 ∼ DRB1 ∼ DRB3 ∼ DQA1 ∼ DQB2 (H1 and DRA1*02 ∼ DRB2 ∼ DRB4 ∼ DQA2 ∼ DQB1 (H2. The latter finding indicates that the current members of the deer species have lost the powerful ancestral MHC class II haplotypes of nine or more loci, and have instead fixed two relatively weak haplotypes containing five genes. As a result, the Père David's deer are currently at risk for increased susceptibility to infectious pathogens.

  8. Mechanisms of global diversification in the marine species Madeiran Storm-petrel Oceanodroma castro and Monteiro's Storm-petrel O. monteiroi: Insights from a multi-locus approach.

    Science.gov (United States)

    Silva, Mauro F; Smith, Andrea L; Friesen, Vicki L; Bried, Joël; Hasegawa, Osamu; Coelho, M Manuela; Silva, Mónica C

    2016-05-01

    The evolutionary mechanisms underlying the geographic distribution of gene lineages in the marine environment are not as well understood as those affecting terrestrial groups. The continuous nature of the pelagic marine environment may limit opportunities for divergence to occur and lineages to spatially segregate, particularly in highly mobile species. Here, we studied the phylogeography and historical demography of two tropically distributed, pelagic seabirds, the Madeiran Storm-petrel Oceanodroma castro, sampled in the Azores, Madeira, Galapagos and Japan, and its sister species Monteiro's Storm-petrel O. monteiroi (endemic to the Azores), using a multi-locus dataset consisting of 12 anonymous nuclear loci and the mitochondrial locus control region. Both marker types support the existence of four significantly differentiated genetic clusters, including the sampled O. monteiroi population and three populations within O. castro, although only the mitochondrial locus suggests complete lineage sorting. Multi-locus coalescent analyses suggest that most divergence events occurred within the last 200,000years. The proximity in divergence times precluded robust inferences of the species tree, in particular of the evolutionary relationships of the Pacific populations. Despite the great potential for dispersal, divergence among populations apparently proceeded in the absence of gene flow, emphasizing the effect of non-physical barriers, such as those driven by the paleo-oceanographical environments, philopatry and local adaptation, as important mechanisms of population divergence and speciation in highly mobile marine species. In view of the predicted climate change impacts, future changes in the demography and evolutionary dynamics of marine populations might be expected. Copyright © 2016 Elsevier Inc. All rights reserved.

  9. The SeaDAS Processing and Analysis System: SeaWiFS, MODIS, and Beyond

    Science.gov (United States)

    MacDonald, M. D.; Ruebens, M.; Wang, L.; Franz, B. A.

    2005-12-01

    The SeaWiFS Data Analysis System (SeaDAS) is a comprehensive software package for the processing, display, and analysis of ocean data from a variety of satellite sensors. Continuous development and user support by programmers and scientists for more than a decade has helped to make SeaDAS the most widely used software package in the world for ocean color applications, with a growing base of users from the land and sea surface temperature community. Full processing support for past (CZCS, OCTS, MOS) and present (SeaWiFS, MODIS) sensors, and anticipated support for future missions such as NPP/VIIRS, enables end users to reproduce the standard ocean archive product suite distributed by NASA's Ocean Biology Processing Group (OBPG), as well as a variety of evaluation and intermediate ocean, land, and atmospheric products. Availability of the processing algorithm source codes and a software build environment also provide users with the tools to implement custom algorithms. Recent SeaDAS enhancements include synchronization of MODIS processing with the latest code and calibration updates from the MODIS Calibration Support Team (MCST), support for all levels of MODIS processing including Direct Broadcast, a port to the Macintosh OS X operating system, release of the display/analysis-only SeaDAS-Lite, and an extremely active web-based user support forum.

  10. Speciation of two gobioid species, Pterogobius elapoides and Pterogobius zonoleucus revealed by multi-locus nuclear and mitochondrial DNA analyses

    KAUST Repository

    Akihito

    2015-10-28

    To understand how geographical differentiation of gobioid fish species led to speciation, two populations of the Pacific Ocean and the Sea of Japan for each of the two gobioid species, Pterogobius elapoides and Pterogobius zonoleucus, were studied in both morphological and molecular features. Analyzing mitochondrial genes, Akihito et al. (2008) suggested that P. zonoleucus does not form a monophyletic clade relative to P. elapoides, indicating that “Sea of Japan P. zonoleucus” and P. elapoides form a clade excluding “Pacific P. zonoleucus” as an outgroup. Because morphological classification clearly distinguish these two species and a gene tree may differ from a population tree, we examined three nuclear genes, S7RP, RAG1, and TBR1, in this work, in order to determine whether nuclear and mitochondrial trees are concordant, thus shedding light on the evolutionary history of this group of fishes. Importantly, nuclear trees were based on exactly the same individuals that were used for the previously published mtDNA trees. The tree based on RAG1 exon sequences suggested a closer relationship of P. elapoides with “Sea of Japan P. zonoleucus”, which was in agreement with the mitochondrial tree. In contrast, S7RP and TBR1 introns recovered a monophyletic P. zonoleucus. If the mitochondrial tree represents the population tree in which P. elapoides evolved from “Sea of Japan P. zonoleucus”, the population size of P. elapoides is expected to be smaller than that of “Sea of Japan P. zonoleucus”. This is because a smaller population of the new species is usually differentiated from a larger population of the ancestral species when the speciation occurred. However, we found no evidence of such a small population size during the evolution of P. elapoides. Therefore, we conclude that the monophyletic P. zonoleucus as suggested by S7RP and TBR1 most likely represents the population tree, which is consistent with the morphological classification. In this case

  11. A multivariate analysis of Antarctic sea ice since 1979

    Energy Technology Data Exchange (ETDEWEB)

    Magalhaes Neto, Newton de; Evangelista, Heitor [Universidade do Estado do Rio de Janeiro (Uerj), LARAMG - Laboratorio de Radioecologia e Mudancas Globais, Maracana, Rio de Janeiro, RJ (Brazil); Tanizaki-Fonseca, Kenny [Universidade do Estado do Rio de Janeiro (Uerj), LARAMG - Laboratorio de Radioecologia e Mudancas Globais, Maracana, Rio de Janeiro, RJ (Brazil); Universidade Federal Fluminense (UFF), Dept. Analise Geoambiental, Inst. de Geociencias, Niteroi, RJ (Brazil); Penello Meirelles, Margareth Simoes [Universidade do Estado do Rio de Janeiro (UERJ)/Geomatica, Maracana, Rio de Janeiro, RJ (Brazil); Garcia, Carlos Eiras [Universidade Federal do Rio Grande (FURG), Laboratorio de Oceanografia Fisica, Rio Grande, RS (Brazil)

    2012-03-15

    Recent satellite observations have shown an increase in the total extent of Antarctic sea ice, during periods when the atmosphere and oceans tend to be warmer surrounding a significant part of the continent. Despite an increase in total sea ice, regional analyses depict negative trends in the Bellingshausen-Amundsen Sea and positive trends in the Ross Sea. Although several climate parameters are believed to drive the formation of Antarctic sea ice and the local atmosphere, a descriptive mechanism that could trigger such differences in trends are still unknown. In this study we employed a multivariate analysis in order to identify the response of the Antarctic sea ice with respect to commonly utilized climate forcings/parameters, as follows: (1) The global air surface temperature, (2) The global sea surface temperature, (3) The atmospheric CO{sub 2} concentration, (4) The South Annular Mode, (5) The Nino 3, (6) The Nino (3 + 4, 7) The Nino 4, (8) The Southern Oscillation Index, (9) The Multivariate ENSO Index, (10) the Total Solar Irradiance, (11) The maximum O{sub 3} depletion area, and (12) The minimum O{sub 3} concentration over Antarctica. Our results indicate that western Antarctic sea ice is simultaneously impacted by several parameters; and that the minimum, mean, and maximum sea ice extent may respond to a separate set of climatic/geochemical parameters. (orig.)

  12. Biogeography of Persephonella in deep-sea hydrothermal vents of the Western Pacific.

    Directory of Open Access Journals (Sweden)

    Sayaka eMino

    2013-04-01

    Full Text Available Deep-sea hydrothermal vent fields are areas on the seafloor with high biological productivity fueled by microbial chemosynthesis. Members of the Aquificales genus Persephonella are obligately chemosynthetic bacteria, and appear to be key players in carbon, sulfur, and nitrogen cycles in high temperature habitats at deep-sea vents. Although this group of bacteria has cosmopolitan distribution in deep-sea hydrothermal ecosystem around the world, little is known about their population structure such as intraspecific genomic diversity, distribution pattern, and phenotypic diversity. We developed the multi-locus sequence analysis (MLSA scheme for their genomic characterization. Sequence variation was determined in five housekeeping genes and one functional gene of 36 P. hydrogeniphila strains originated from the Okinawa Trough and the South Mariana Trough. Although the strains share > 98.7% similarities in 16S rRNA gene sequences, MLSA revealed 35 different sequence types, indicating their extensive genomic diversity. A phylogenetic tree inferred from all concatenated gene sequences revealed the clustering of isolates according to the geographic origin. In addition, the phenotypic clustering pattern inferred from whole-cell matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF/MS analysis can be correlated to their MLSA clustering pattern. This study represents the first MLSA combined with phenotypic analysis indicative of allopatric speciation of deep-sea hydrothermal vent bacteria.

  13. NOAA High-Resolution Sea Surface Temperature (SST) Analysis Products

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This archive covers two high resolution sea surface temperature (SST) analysis products developed using an optimum interpolation (OI) technique. The analyses have a...

  14. The bioinvasion of Guam: inferring geographic origin, pace, pattern and process of an invasive lizard (Carlia) in the Pacific using multi-locus genomic data

    Science.gov (United States)

    Austin, C.C.; Rittmeyer, E.N.; Oliver, L.A.; Andermann, J.O.; Zug, G.R.; Rodda, G.H.; Jackson, N.D.

    2011-01-01

    Invasive species often have dramatic negative effects that lead to the deterioration and loss of biodiversity frequently coupled with the burden of expensive biocontrol programs and subversion of socioeconomic stability. The fauna and flora of oceanic islands are particularly susceptible to invasive species and the increase of global movements of humans and their products since WW II has caused numerous anthropogenic translocations and increased the ills of human-mediated invasions. We use a multi-locus genomic dataset to identify geographic origin, pace, pattern and historical process of an invasive scincid lizard (Carlia) that has been inadvertently introduced to Guam, the Northern Marianas, and Palau. This lizard is of major importance as its introduction is thought to have assisted in the establishment of the invasive brown treesnake (Boiga irregularis) on Guam by providing a food resource. Our findings demonstrate multiple waves of introductions that appear to be concordant with movements of Allied and Imperial Japanese forces in the Pacific during World War II.

  15. Multi-locus analyses of an Antarctic fish species flock (Teleostei, Notothenioidei, Trematominae): Phylogenetic approach and test of the early-radiation event

    International Nuclear Information System (INIS)

    Janko, K.; Musilova, Z.; Marshall, C.; Van Houdt, J.; Couloux, A.; Cruaud, C.; Lecointre, G.

    2011-01-01

    Clades that have undergone episodes of rapid cladogenesis are challenging from a phylogenetic point of view. They are generally characterised by short or missing internal branches in phylogenetic trees and by conflicting topologies among individual gene trees. This may be the case of the subfamily Trematominae, a group of marine teleosts of coastal Antarctic waters, which is considered to have passed through a period of rapid diversification. Despite much phylogenetic attention, the relationships among Trematominae species remain unclear. In contrast to previous studies that were mostly based on concatenated datasets of mitochondrial and/or single nuclear loci, we applied various single-locus and multi-locus phylogenetic approaches to sequences from 11 loci (eight nuclear) and we also used several methods to assess the hypothesis of a radiation event in Trematominae evolution. Diversification rate analyses support the hypothesis of a period of rapid diversification during Trematominae history and only a few nodes in the hypothetical species tree were consistently resolved with various phylogenetic methods. We detected significant discrepancies among trees from individual genes of these species, most probably resulting from incomplete lineage sorting, suggesting that concatenation of loci is not the most appropriate way to investigate Trematominae species interrelationships. These data also provide information about the possible effects of historic climate changes on the diversification rate of this group of fish. (authors)

  16. An integrative approach to phylogeography: investigating the effects of ancient seaways, climate, and historical geology on multi-locus phylogeographic boundaries of the Arboreal Salamander (Aneides lugubris).

    Science.gov (United States)

    Reilly, Sean B; Corl, Ammon; Wake, David B

    2015-11-04

    Phylogeography is an important tool that can be used to reveal cryptic biodiversity and to better understand the processes that promote lineage diversification. We studied the phylogeographic history of the Arboreal Salamander (Aneides lugubris), a wide-ranging species endemic to the California floristic province. We used multi-locus data to reconstruct the evolutionary history of A. lugubris and to discover the geographic location of major genetic breaks within the species. We also used species distribution modeling and comparative phylogeography to better understand the environmental factors that have shaped the genetic history of A. lugubris. We found six major mitochondrial clades in A. lugubris. Nuclear loci supported the existence of at least three genetically distinct groups, corresponding to populations north of the San Francisco Bay and in the Sierra Nevada, in the Santa Cruz Mountains, and in the central coast and southern California. All of the genetic breaks in mitochondrial and nuclear loci corresponded to regions where historical barriers to dispersal have been observed in other species. Geologic or water barriers likely were the most important factors restricting gene flow among clades. Climatic unsuitability during glacial maximum may have contributed to the isolation of the mitochondrial clades in the central coast and southern California. A projection of our species distribution model to a future scenario with a moderate amount of climate change suggests that most of the range of A. lugubris will remain climatically suitable, but climatic conditions in the Sierra Nevada and low elevation areas in Southern California are likely to deteriorate. Aneides lugubris contains substantial cryptic genetic diversity as a result of historical isolation of populations. At least two (and perhaps three) evolutionarily significant units in A. lugubris merit protection; all six mitochondrial clades should be considered as management units within the species.

  17. Recent speciation in three closely related sympatric specialists: inferences using multi-locus sequence, post-mating isolation and endosymbiont data.

    Directory of Open Access Journals (Sweden)

    Huai-Jun Xue

    Full Text Available Shifting between unrelated host plants is relatively rare for phytophagous insects, and distinct host specificity may play crucial roles in reproductive isolation. However, the isolation status and the relationship between parental divergence and post-mating isolation among closely related sympatric specialists are still poorly understood. Here, multi-locus sequence were used to estimate the relationship among three host plant-specific closely related flea beetles, Altica cirsicola, A. fragariae and A. viridicyanea (abbreviated as AC, AF and AV respectively. The tree topologies were inconsistent using different gene or different combinations of gene fragments. The relationship of AF+(AC+AV was supported, however, by both gene tree and species tree based on concatenated data. Post-mating reproductive data on the results of crossing these three species are best interpreted in the light of a well established phylogeny. Nuclear-induced but not Wolbachia-induced unidirectional cytoplasmic incompatibility, which was detected in AC-AF and AF-AV but not in AC-AV, may also suggest more close genetic affinity between AC and AV. Prevalence of Wolbachia in these three beetles, and the endosymbiont in most individuals of AV and AC sharing a same wsp haplotype may give another evidence of AF+(AC+AV. Our study also suggested that these three flea beetles diverged in a relative short time (0.94 My, which may be the result of shifting between unrelated host plants and distinct host specificity. Incomplete post-mating isolation while almost complete lineage sorting indicated that effective pre-mating isolation among these three species should have evolved.

  18. Rank-based characterization of pollen assemblages collected by honey bees using a multi-locus metabarcoding approach.

    Science.gov (United States)

    Richardson, Rodney T; Lin, Chia-Hua; Quijia, Juan O; Riusech, Natalia S; Goodell, Karen; Johnson, Reed M

    2015-11-01

    Difficulties inherent in microscopic pollen identification have resulted in limited implementation for large-scale studies. Metabarcoding, a relatively novel approach, could make pollen analysis less onerous; however, improved understanding of the quantitative capacity of various plant metabarcode regions and primer sets is needed to ensure that such applications are accurate and precise. We applied metabarcoding, targeting the ITS2, matK, and rbcL loci, to characterize six samples of pollen collected by honey bees, Apis mellifera. Additionally, samples were analyzed by light microscopy. We found significant rank-based associations between the relative abundance of pollen types within our samples as inferred by the two methods. Our findings suggest metabarcoding data from plastid loci, as opposed to the ribosomal locus, are more reliable for quantitative characterization of pollen assemblages. Furthermore, multilocus metabarcoding of pollen may be more reliable than single-locus analyses, underscoring the need for discovering novel barcodes and barcode combinations optimized for molecular palynology.

  19. Assessing models of speciation under different biogeographic scenarios; An empirical study using multi-locus and RNA-seq analyses

    Science.gov (United States)

    Edwards, Taylor; Tollis, Marc; Hsieh, PingHsun; Gutenkunst, Ryan N.; Liu, Zhen; Kusumi, Kenro; Culver, Melanie; Murphy, Robert W.

    2016-01-01

    Evolutionary biology often seeks to decipher the drivers of speciation, and much debate persists over the relative importance of isolation and gene flow in the formation of new species. Genetic studies of closely related species can assess if gene flow was present during speciation, because signatures of past introgression often persist in the genome. We test hypotheses on which mechanisms of speciation drove diversity among three distinct lineages of desert tortoise in the genus Gopherus. These lineages offer a powerful system to study speciation, because different biogeographic patterns (physical vs. ecological segregation) are observed at opposing ends of their distributions. We use 82 samples collected from 38 sites, representing the entire species' distribution and generate sequence data for mtDNA and four nuclear loci. A multilocus phylogenetic analysis in *BEAST estimates the species tree. RNA-seq data yield 20,126 synonymous variants from 7665 contigs from two individuals of each of the three lineages. Analyses of these data using the demographic inference package ∂a∂i serve to test the null hypothesis of no gene flow during divergence. The best-fit demographic model for the three taxa is concordant with the *BEAST species tree, and the ∂a∂i analysis does not indicate gene flow among any of the three lineages during their divergence. These analyses suggest that divergence among the lineages occurred in the absence of gene flow and in this scenario the genetic signature of ecological isolation (parapatric model) cannot be differentiated from geographic isolation (allopatric model).

  20. Spectral analysis of optical emission of microplasma in sea water

    Science.gov (United States)

    Gamaleev, Vladislav; Morita, Hayato; Oh, Jun-Seok; Furuta, Hiroshi; Hatta, Akimitsu

    2016-09-01

    This work presents an analysis of optical emission spectra from microplasma in three types of liquid, namely artificial sea water composed of 10 typical agents (10ASW), reference solutions each containing a single agent (NaCl, MgCl2 + H2O, Na2SO4, CaCl2, KCl, NaHCO3, KBr, NaHCO3, H3BO3, SrCl2 + H2O, NaF) and naturally sampled deep sea water (DSW). Microplasma was operated using a needle(Pd)-to-plate(Pt) electrode system sunk into each liquid in a quartz cuvette. The radius of the tip of the needle was 50 μm and the gap between the electrodes was set at 20 μm. An inpulse generator circuit, consisting of a MOSFET switch, a capacitor, an inductor and the resistance of the liquid between the electrodes, was used as a pulse current source for operation of discharges. In the spectra, the emission peaks for the main components of sea water and contaminants from the electrodes were detected. Spectra for reference solutions were examined to enable the identification of unassigned peaks in the spectra for sea water. Analysis of the Stark broadening of H α peak was carried out to estimate the electron density of the plasma under various conditions. The characteristics of microplasma discharge in sea water and the analysis of the optical emission spectra will be presented. This work was supported by JSPS KAKENHI Grant Number 26600129.

  1. Rank-based characterization of pollen assemblages collected by honey bees using a multi-locus metabarcoding approach1

    Science.gov (United States)

    Richardson, Rodney T.; Lin, Chia-Hua; Quijia, Juan O.; Riusech, Natalia S.; Goodell, Karen; Johnson, Reed M.

    2015-01-01

    Premise of the study: Difficulties inherent in microscopic pollen identification have resulted in limited implementation for large-scale studies. Metabarcoding, a relatively novel approach, could make pollen analysis less onerous; however, improved understanding of the quantitative capacity of various plant metabarcode regions and primer sets is needed to ensure that such applications are accurate and precise. Methods and Results: We applied metabarcoding, targeting the ITS2, matK, and rbcL loci, to characterize six samples of pollen collected by honey bees, Apis mellifera. Additionally, samples were analyzed by light microscopy. We found significant rank-based associations between the relative abundance of pollen types within our samples as inferred by the two methods. Conclusions: Our findings suggest metabarcoding data from plastid loci, as opposed to the ribosomal locus, are more reliable for quantitative characterization of pollen assemblages. Furthermore, multilocus metabarcoding of pollen may be more reliable than single-locus analyses, underscoring the need for discovering novel barcodes and barcode combinations optimized for molecular palynology. PMID:26649264

  2. Chemical analysis of useful trace elements in sea water

    International Nuclear Information System (INIS)

    Katoh, Shunsaku; Fujii, Ayako; Miyai, Yoshitaka; Sakane, Kohji; Ogata, Noboru.

    1983-01-01

    The methods for the analysis of useful trace elements in sea water which have been tried so far are reviewed, and these methods are described briefly from the standpoint of studying the collection of resources. Ag and Au can be determined by concentrating sea water by ion-exchange method, solvent extraction method and electrodeposition method, then the elements are measured quantitatively by activation analysis and atomic absorption spectrochemical analysis. Sr, B and Li, which exist in relatively high concentration in sea water, are determined easily by atomic absorption spectrochemical analysis and absorption spectrometry. U, Mo and V are measured suitably by concentrating the elements by coprecipitation or solvent extraction method, and measuring by fluorescence analysis and arsenazo-3 method for U and through graphite-atomic absorption analysis for Mo and V. It has been revealed that the concentration of Ag and Au in sea water is extremely low, accordingly the recovery study is not conducted recently. On the other hand, the adsorption method using hydrated titanium oxide and amidoxim adsorbents for U, Mo and V, the adsorption method using aluminum adsorbent for Li, and the adsorption method using magnesium oxide and zirconium hydroxide and the solvent extraction method for B are hopeful to recover these elements. (Yoshitake, I.)

  3. Analysis of Sea Ice Cover Sensitivity in Global Climate Model

    Directory of Open Access Journals (Sweden)

    V. P. Parhomenko

    2014-01-01

    Full Text Available The paper presents joint calculations using a 3D atmospheric general circulation model, an ocean model, and a sea ice evolution model. The purpose of the work is to analyze a seasonal and annual evolution of sea ice, long-term variability of a model ice cover, and its sensitivity to some parameters of model as well to define atmosphere-ice-ocean interaction.Results of 100 years simulations of Arctic basin sea ice evolution are analyzed. There are significant (about 0.5 m inter-annual fluctuations of an ice cover.The ice - atmosphere sensible heat flux reduced by 10% leads to the growth of average sea ice thickness within the limits of 0.05 m – 0.1 m. However in separate spatial points the thickness decreases up to 0.5 m. An analysis of the seasonably changing average ice thickness with decreasing, as compared to the basic variant by 0.05 of clear sea ice albedo and that of snow shows the ice thickness reduction in a range from 0.2 m up to 0.6 m, and the change maximum falls for the summer season of intensive melting. The spatial distribution of ice thickness changes shows, that on the large part of the Arctic Ocean there was a reduction of ice thickness down to 1 m. However, there is also an area of some increase of the ice layer basically in a range up to 0.2 m (Beaufort Sea. The 0.05 decrease of sea ice snow albedo leads to reduction of average ice thickness approximately by 0.2 m, and this value slightly depends on a season. In the following experiment the ocean – ice thermal interaction influence on the ice cover is estimated. It is carried out by increase of a heat flux from ocean to the bottom surface of sea ice by 2 W/sq. m in comparison with base variant. The analysis demonstrates, that the average ice thickness reduces in a range from 0.2 m to 0.35 m. There are small seasonal changes of this value.The numerical experiments results have shown, that an ice cover and its seasonal evolution rather strongly depend on varied parameters

  4. Hookworm infection, anaemia and genetic variability of the New Zealand sea lion

    OpenAIRE

    Acevedo-Whitehouse, Karina; Petetti, Laura; Duignan, Padraig; Castinel, Aurelie

    2009-01-01

    Hookworms are intestinal blood-feeding nematodes that parasitize and cause high levels of mortality in a wide range of mammals, including otariid pinnipeds. Recently, an empirical study showed that inbreeding (assessed by individual measures of multi-locus heterozygosity) is associated with hookworm-related mortality of California sea lions. If inbreeding increases susceptibility to hookworms, effects would expectedly be stronger in small, fragmented populations. We tested this assumption in ...

  5. Compositional Analysis of North Sea Oils

    DEFF Research Database (Denmark)

    Dandekar, Abhijit; Andersen, Simon Ivar; Stenby, Erling Halfdan

    2000-01-01

    The molar fluid composition of either the reservoir fluid or the well stream is determined by combining the true boiling point (TBP) distillation data with gas chromatographic (GC) analysis of the light ends. For the purpose of thermodynamic simulation of phase behavior of petroleum reservoir...... fluids, in addition to the compositional data, physical properties of the pseudo fractions, i.e. density and molecular weight are required. A major drawback of the TBP distillation is the fact that the fractions contain typically 20 - 30% of the material outside the defined boiling range. Another...

  6. Potential impacts of climate change on the primary production of regional seas: A comparative analysis of five European seas

    Science.gov (United States)

    Holt, Jason; Schrum, Corinna; Cannaby, Heather; Daewel, Ute; Allen, Icarus; Artioli, Yuri; Bopp, Laurent; Butenschon, Momme; Fach, Bettina A.; Harle, James; Pushpadas, Dhanya; Salihoglu, Baris; Wakelin, Sarah

    2016-01-01

    Regional seas are potentially highly vulnerable to climate change, yet are the most directly societally important regions of the marine environment. The combination of widely varying conditions of mixing, forcing, geography (coastline and bathymetry) and exposure to the open-ocean makes these seas subject to a wide range of physical processes that mediates how large scale climate change impacts on these seas' ecosystems. In this paper we explore the response of five regional sea areas to potential future climate change, acting via atmospheric, oceanic and terrestrial vectors. These include the Barents Sea, Black Sea, Baltic Sea, North Sea, Celtic Seas, and are contrasted with a region of the Northeast Atlantic. Our aim is to elucidate the controlling dynamical processes and how these vary between and within these seas. We focus on primary production and consider the potential climatic impacts on: long term changes in elemental budgets, seasonal and mesoscale processes that control phytoplankton's exposure to light and nutrients, and briefly direct temperature response. We draw examples from the MEECE FP7 project and five regional model systems each using a common global Earth System Model as forcing. We consider a common analysis approach, and additional sensitivity experiments. Comparing projections for the end of the 21st century with mean present day conditions, these simulations generally show an increase in seasonal and permanent stratification (where present). However, the first order (low- and mid-latitude) effect in the open ocean projections of increased permanent stratification leading to reduced nutrient levels, and so to reduced primary production, is largely absent, except in the NE Atlantic. Even in the two highly stratified, deep water seas we consider (Black and Baltic Seas) the increase in stratification is not seen as a first order control on primary production. Instead, results show a highly heterogeneous picture of positive and negative change

  7. [Principal component analysis and cluster analysis of inorganic elements in sea cucumber Apostichopus japonicus].

    Science.gov (United States)

    Liu, Xiao-Fang; Xue, Chang-Hu; Wang, Yu-Ming; Li, Zhao-Jie; Xue, Yong; Xu, Jie

    2011-11-01

    The present study is to investigate the feasibility of multi-elements analysis in determination of the geographical origin of sea cucumber Apostichopus japonicus, and to make choice of the effective tracers in sea cucumber Apostichopus japonicus geographical origin assessment. The content of the elements such as Al, V, Cr, Mn, Fe, Co, Ni, Cu, Zn, As, Se, Mo, Cd, Hg and Pb in sea cucumber Apostichopus japonicus samples from seven places of geographical origin were determined by means of ICP-MS. The results were used for the development of elements database. Cluster analysis(CA) and principal component analysis (PCA) were applied to differentiate the sea cucumber Apostichopus japonicus geographical origin. Three principal components which accounted for over 89% of the total variance were extracted from the standardized data. The results of Q-type cluster analysis showed that the 26 samples could be clustered reasonably into five groups, the classification results were significantly associated with the marine distribution of the sea cucumber Apostichopus japonicus samples. The CA and PCA were the effective methods for elements analysis of sea cucumber Apostichopus japonicus samples. The content of the mineral elements in sea cucumber Apostichopus japonicus samples was good chemical descriptors for differentiating their geographical origins.

  8. GHRSST Level 4 DMI_OI Global Foundation Sea Surface Temperature Analysis (GDS version 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis by the Danish...

  9. GHRSST Level 4 MUR North America Regional Foundation Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced as a retrospective dataset at the JPL Physical...

  10. GHRSST Level 4 OSPO Global Nighttime Foundation Sea Surface Temperature Analysis (GDS version 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the Office of...

  11. GHRSST Level 4 AVHRR_AMSR_OI Global Blended Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) global Level 4 sea surface temperature analysis produced daily on a 0.25 degree grid at the NOAA...

  12. GHRSST Level 4 G1SST Global Foundation Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis by the JPL OurOcean...

  13. GHRSST Level 4 MW_OI Global Foundation Sea Surface Temperature analysis (GDS version 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) global Level 4 sea surface temperature analysis produced daily on a 0.25 degree grid at Remote Sensing...

  14. GHRSST Level 4 K10_SST Global 1 meter Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the Naval...

  15. GHRSST Level 4 ODYSSEA Eastern Central Pacific Regional Foundation Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at Ifremer/CERSAT...

  16. GHRSST Level 4 ODYSSEA Global Foundation Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at Ifremer/CERSAT...

  17. GHRSST Level 4 OSPO Global Foundation Sea Surface Temperature Analysis (GDS version 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the Office of...

  18. GHRSST Level 4 GAMSSA Global Foundation Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the Australian Bureau...

  19. GHRSST Level 4 RAMSSA Australian Regional Foundation Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the Australian Bureau...

  20. GHRSST Level 4 OSTIA Global Foundation Sea Surface Temperature Analysis (GDS versions 1 and 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the UK Met Office...

  1. Indonesian Sea Accident Analysis (Case Study From 2003 – 2013)

    Science.gov (United States)

    Arya Dewanto, Y.; Faturachman, D.

    2018-03-01

    There are so many accidents in sea transportation in Indonesia. Most of the accidents happen because of low concern aspects of the safety and security of the crew. In sailing, a man as transport users to interact with the ship and the surrounding environment (including other ships, cruise lines, ports, and the situation of local conditions). These interactions are sometimes very complex and related to various aspects of. Aware of the multiplicity of aspects related to the third of these factors, seeking the safety of cruise through a reduction in the number of accidents and the risk of death and serious injuries due to accidents and goods transported is certainly not enough attempted through mono-sector approach, but rather takes a multi-sector approach to the efforts. In this paper, we described the Indonesian Sea Transportation accident analysis for eleven years divided into four items: total of ship accident type, ship accident factor, total of casualties, region of ship accidents. All data founded from Marine Court (Mahkamah Pelayaran). From that 4 items we can find Indonesia Sea Accident Analysis from 2003-2013.

  2. REGRESSION ANALYSIS OF SEA-SURFACE-TEMPERATURE PATTERNS FOR THE NORTH PACIFIC OCEAN.

    Science.gov (United States)

    SEA WATER, *SURFACE TEMPERATURE, *OCEANOGRAPHIC DATA, PACIFIC OCEAN, REGRESSION ANALYSIS , STATISTICAL ANALYSIS, UNDERWATER EQUIPMENT, DETECTION, UNDERWATER COMMUNICATIONS, DISTRIBUTION, THERMAL PROPERTIES, COMPUTERS.

  3. The First SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-1)

    Science.gov (United States)

    Hooker, Stanford B. (Editor); Firestone, Elaine R. (Editor); Claustre, Herve; Ras, Josephine; VanHeukelem, Laurie; Berthon, Jean-Francois; Targa, Cristina; vanderLinde, Dirk; Barlow, Ray; Sessions, Heather

    2001-01-01

    Four laboratories, which had contributed to various aspects of SeaWiFS calibration and validation activities, participated in the first SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-1): Horn Point Laboratory (USA), the Joint Research Centre (Italy), the Laboratoire de Physique et Chimie Marines (France), and the Marine and Coastal Management group (South Africa). The analyses of the data are presented in Chapter 1 and the individual methods of the four groups are presented in Chapters 2-5. The average (or overall) conclusions of the round-robin are derived from 12 in situ stations occupied during a cruise in the Mediterranean Sea, although, only 11 stations are used in the analyses. The data set is composed of 12 replicates taken during each sampling opportunity with 3 replicates going to each of the 4 laboratories. The average (or overall) results from the intercomparison of 15 pigments or pigment associations are as follows (in some cases, data subsets that exclude pigments which were not analyzed by all the laboratories, or that had unusually large variances, are used to exclude a variety of problematic pigments): a) the accuracy of the four methods in determining the concentration of total chlorophyll a is 7.9%, (one method did not separate mono- and divinyl chlorophyll a, and if the samples containing significant divinyl chlorophyll a concentrations are ignored, the four methods have an accuracy of 6.7%); b) the accuracy in determining the full set of pigments is 19.1%; c) there is a reduction in accuracy of approximately - 12.2% for every decade (factor of 10) decrease in concentration (based on a data subset); d) the precision of the four methods using a subset data is 8.617( 6.2% for an edited subset); e) the repeatability of the four methods using the subset data is 9.2% (7.2%; for an edited subset, and f) the reproducibility of the four methods using the subset data is 21.31% (15.0% for an edited subset).

  4. Development of a multi-locus sequence typing scheme for Laribacter hongkongensis, a novel bacterium associated with freshwater fish-borne gastroenteritis and traveler's diarrhea

    Directory of Open Access Journals (Sweden)

    Lee Edwin KY

    2009-01-01

    Full Text Available Abstract Background Laribacter hongkongensis is a newly discovered, facultative anaerobic, Gram-negative, motile, sea gull-shaped rod associated with freshwater fish borne gastroenteritis and traveler's diarrhea. A highly reproducible and discriminative typing system is essential for better understanding of the epidemiology of L. hongkongensis. In this study, a multilocus sequence typing (MLST system was developed for L. hongkongensis. The system was used to characterize 146 L. hongkongensis isolates, including 39 from humans and 107 from fish. Results Fragments (362 to 504 bp of seven housekeeping genes were amplified and sequenced. Among the 3068 bp of the seven loci, 332 polymorphic sites were observed. The median number of alleles at each locus was 34 [range 22 (ilvC to 45 (thiC]. All seven genes showed very low dn/ds ratios of ISA measurement showed significant linkage disequilibrium in isolates from both humans and fish. The ISA for the isolates from humans and fish were 0.270 and 0.636, indicating the isolates from fish were more clonal than the isolates from humans. Only one interconnected network (acnB was detected in the split graphs. The P-value (P = 0 of sum of the squares of condensed fragments in Sawyer's test showed evidence of intragenic recombination in the rho, acnB and thiC loci, but the P-value (P = 1 of maximum condensed fragment in these gene loci did not show evidence of intragenic recombination. Congruence analysis showed that all the pairwise comparisons of the 7 MLST loci were incongruent, indicating that recombination played a substantial role in the evolution of L. hongkongensis. A website for L. hongkongensis MLST was set up and can be accessed at http://mlstdb.hku.hk:14206/MLST_index.html. Conclusion A highly reproducible and discriminative MLST system was developed for L. hongkongensis.

  5. Sea level rise and the geoid: factor analysis approach

    OpenAIRE

    Song, Hongzhi; Sadovski, Alexey; Jeffress, Gary

    2013-01-01

    Sea levels are rising around the world, and this is a particular concern along most of the coasts of the United States. A 1989 EPA report shows that sea levels rose 5-6 inches more than the global average along the Mid-Atlantic and Gulf Coasts in the last century. The main reason for this is coastal land subsidence. This sea level rise is considered more as relative sea level rise than global sea level rise. Thus, instead of studying sea level rise globally, this paper describes a statistical...

  6. A Bioeconomic Analysis of Traditional Fisheries in the Red Sea

    KAUST Repository

    Jin, Di

    2012-06-15

    We undertake a bioeconomic analysis of the aggregate traditional fisheries in the Northern and Central areas of Red Sea off the coast of the Kingdom of Saudi Arabia (KSA). Results of our analysis using a Fox model and the Clarke-Yoshimoto-Pooley (CY&P) estimation procedure suggest that the aggregate traditional fisheries have been overfished since the early 1990s. The estimated stock size in recent years is as low as 6,400 MT, while the estimated stock size associated with the maximum economic yield (MEY) is 19,300 MT. The socially optimal level of fishing effort is about 139,000 days. Thus, the current effort level of 300,000 to 350,000 days constitutes a problem of overfishing. The estimated current total gross revenue from the traditional fisheries is Saudi Rials (SR) 147 million with zero net benefit. If total fishing effort is reduced to the socially optimal level, then we estimate gross revenue would be SR 167 million and the potential net benefit from the KSA Red Sea traditional fisheries could be as large as SR 111 million. Copyright © 2012 MRE Foundation, Inc.

  7. Metabarcoding analysis of European hake diet in the Mediterranean Sea

    Directory of Open Access Journals (Sweden)

    Giulia Riccioni

    2015-10-01

    Full Text Available European hake (EH, Merluccius merluccius, is a demersal fish distributed from the North Sea and Atlantic to the Levantine Sea in the Mediterranean. EH is an important predator of deep Mediterranean upper shelf slope communities and it is currently characterised by growth overexploitation. EH adults feed mainly on fish and squids whereas the young (<16 cm feed on crustaceans. All current EH diet studies relied on the morphological identification of prey remains in stomach content, however this method is labour intensive and it precludes the identification of strongly digested food. The development of High-Throughput Sequencing (HTS approaches provide more accurate methods for dietary studies revealing many consumed species simultaneously (DNA metabarcoding. The aim of this study is to use a HTS approach based on COI amplification, contextually to classic microscopic morphological identification, to analyse EH stomach content and to evaluate the efficiency of the molecular method. HTS sequencing has been carried out on the amplicons obtained by PCR amplification (Leray et al. 2013 of stomach remains and all the Miseq Illumina paired-end reads have been analysed by using bioinformatic tools (Boyer et al. 2015 for taxonomic assignment. The selected sequences clustered in OCTUs (Operational Clustered Taxonomic Units and taxonomically assigned, will be used in diversity analyses to compute distance matrices among samples, to compare taxa summaries from different samples, to create networks and perform PCA and PcoA analysis. Classic microscopic morphological analyses on stomach content remains have been carried out contextually to compare the results of the two methods. The molecular approach has proven a promising method to study marine fish dietary habits. All the data will be summarized to reconstruct EH trophic dynamics in the Mediterranean Sea.

  8. Analysis of sea use landscape pattern based on GIS: a case study in Huludao, China.

    Science.gov (United States)

    Suo, Anning; Wang, Chen; Zhang, Minghui

    2016-01-01

    This study aims to analyse sea use landscape patterns on a regional scale based on methods of landscape ecology integrated with sea use spatial characteristics. Several landscape-level analysis indices, such as the dominance index, complex index, intensivity index, diversity index and sea congruency index, were established using Geographic Information System (GIS) and applied in Huludao, China. The results indicated that sea use landscape analysis indices, which were created based on the characteristics of sea use spatial patterns using GIS, are suitable to quantitatively describe the landscape patterns of sea use. They are operable tools for the landscape analysis of sea use. The sea use landscape in Huludao was dominated by fishing use with a landscape dominance index of 0.724. The sea use landscape is a complex mosaic with high diversity and plenty of fishing areas, as shown by the landscape complex index of 27.21 and the landscape diversity index of 1.25. Most sea use patches correspond to the marine functional zonation plan and the sea use congruency index is 0.89 in the fishing zone and 0.92 in the transportation zone.

  9. Characterization of Pasteurella multocida associated with ovine pneumonia using multi-locus sequence typing (MLST) and virulence-associated gene profile analysis and comparison with porcine isolates.

    Science.gov (United States)

    García-Alvarez, Andrés; Vela, Ana Isabel; San Martín, Elvira; Chaves, Fernando; Fernández-Garayzábal, José Francisco; Lucas, Domínguez; Cid, Dolores

    2017-05-01

    Pasteurella multocida is a pathogen causing disease in a wide range of hosts including sheep and pigs. Isolates from ovine pneumonia were characterized by MLST (Multi-host and RIRDC databases) and virulence-associated gene (VAG) typing and compared with porcine isolates. Ovine and porcine isolates did not share any STs as determined by both schemes and exhibited different VAG profiles. With the Multi-host database, sixteen STs were identified among 43 sheep isolates with two STs (ST50 and ST19) comprising 53.5% of the isolates, and seven MLST genotypes (ST3, ST11 and ST62 included 75% of the isolates) among the 48 pig isolates. The most frequent VAG profile among sheep isolates was tbpA+/toxA+ (69.8% of isolates) and pfhA+ (62.5%) and hgbB+ (33.3%) among pig isolates. Representative ovine and porcine isolates of those STs identified by the Multi-host scheme were further typed using the RIRDC scheme. Seven STs were identified among the ovine isolates (ST95 RIRDC , ST131 RIRDC , ST203 RIRDC , ST320 RIRDC , ST324 RIRDC , ST321 RIRDC , and ST323 RIRDC ), with the latter four sequence types being new STs identified in this study, and six STs (ST9 RIRDC , ST13 RIRDC , ST27 RIRDC , ST50 RIRDC , and ST74 RIRDC and a new sequence type ST322 RIRDC ) among the porcine isolates. STs identified among ovine isolates have been detected exclusively in small ruminants, suggesting an adaptation to these hosts, while the genotypes identified among pig isolates have been previously identified in multiple hosts and therefore they are not restricted to pigs. The differences in genotypes and VAG profiles between ovine and pig isolates suggest they could represent different subpopulations of P. multocida. Copyright © 2017 Elsevier B.V. All rights reserved.

  10. Taxonomic evaluation of species in the Streptomyces hirsutus clade using multi-locus sequence analysis and proposals to reclassify several species in this clade

    Science.gov (United States)

    Previous phylogenetic analyses of species of Streptomyces based on 16S rRNA gene sequences resulted in a statistically well-supported clade (100% bootstrap value) containing 8 species that exhibited very similar gross morphology in producing open looped (Retinaculum-Apertum) to spiral (Spira) chains...

  11. Improving SMOS Sea Surface Salinity in the Western Mediterranean Sea through Multivariate and Multifractal Analysis

    Directory of Open Access Journals (Sweden)

    Estrella Olmedo

    2018-03-01

    Full Text Available A new methodology using a combination of debiased non-Bayesian retrieval, DINEOF (Data Interpolating Empirical Orthogonal Functions and multifractal fusion has been used to obtain Soil Moisture and Ocean Salinity (SMOS Sea Surface Salinity (SSS fields over the North Atlantic Ocean and the Mediterranean Sea. The debiased non-Bayesian retrieval mitigates the systematic errors produced by the contamination of the land over the sea. In addition, this retrieval improves the coverage by means of multiyear statistical filtering criteria. This methodology allows obtaining SMOS SSS fields in the Mediterranean Sea. However, the resulting SSS suffers from a seasonal (and other time-dependent bias. This time-dependent bias has been characterized by means of specific Empirical Orthogonal Functions (EOFs. Finally, high resolution Sea Surface Temperature (OSTIA SST maps have been used for improving the spatial and temporal resolution of the SMOS SSS maps. The presented methodology practically reduces the error of the SMOS SSS in the Mediterranean Sea by half. As a result, the SSS dynamics described by the new SMOS maps in the Algerian Basin and the Balearic Front agrees with the one described by in situ SSS, and the mesoscale structures described by SMOS in the Alboran Sea and in the Gulf of Lion coincide with the ones described by the high resolution remotely-sensed SST images (AVHRR.

  12. Stability analysis of chalk sea cliffs using UAV photogrammetry

    Science.gov (United States)

    Barlow, John; Gilham, Jamie

    2017-04-01

    Cliff erosion and instability poses a significant hazard to communities and infrastructure located is coastal areas. We use point cloud and spectral data derived from close range digital photogrammetry to assess the stability of chalk sea cliffs located at Telscombe, UK. Data captured from an unmanned aerial vehicle (UAV) were used to generate dense point clouds for a 712 m section of cliff face which ranges from 20 to 49 m in height. Generated models fitted our ground control network within a standard error of 0.03 m. Structural features such as joints, bedding planes, and faults were manually mapped and are consistent with results from other studies that have been conducted using direct measurement in the field. Kinematic analysis of these data was used to identify the primary modes of failure at the site. Our results indicate that wedge failure is by far the most likely mode of slope instability. An analysis of sequential surveys taken from the summer of 2016 to the winter of 2017 indicate several large failures have occurred at the site. We establish the volume of failure through change detection between sequential data sets and use back analysis to determine the strength of shear surfaces for each failure. Our results show that data capture through UAV photogrammetry can provide useful information for slope stability analysis over long sections of cliff. The use of this technology offers significant benefits in equipment costs and field time over existing methods.

  13. Statistical analysis of global surface air temperature and sea level using cointegration methods

    DEFF Research Database (Denmark)

    Schmith, Torben; Johansen, Søren; Thejll, Peter

    Global sea levels are rising which is widely understood as a consequence of thermal expansion and melting of glaciers and land-based ice caps. Due to physically-based models being unable to simulate observed sea level trends, semi-empirical models have been applied as an alternative for projecting...... of future sea levels. There is in this, however, potential pitfalls due to the trending nature of the time series. We apply a statistical method called cointegration analysis to observed global sea level and surface air temperature, capable of handling such peculiarities. We find a relationship between sea...... level and temperature and find that temperature causally depends on the sea level, which can be understood as a consequence of the large heat capacity of the ocean. We further find that the warming episode in the 1940s is exceptional in the sense that sea level and warming deviates from the expected...

  14. Spectral analysis of highly aliased sea-level signals

    Science.gov (United States)

    Ray, Richard D.

    1998-10-01

    Observing high-wavenumber ocean phenomena with a satellite altimeter generally calls for "along-track" analyses of the data: measurements along a repeating satellite ground track are analyzed in a point-by-point fashion, as opposed to spatially averaging data over multiple tracks. The sea-level aliasing problems encountered in such analyses can be especially challenging. For TOPEX/POSEIDON, all signals with frequency greater than 18 cycles per year (cpy), including both tidal and subdiurnal signals, are folded into the 0-18 cpy band. Because the tidal bands are wider than 18 cpy, residual tidal cusp energy, plus any subdiurnal energy, is capable of corrupting any low-frequency signal of interest. The practical consequences of this are explored here by using real sea-level measurements from conventional tide gauges, for which the true oceanographic spectrum is known and to which a simulated "satellite-measured" spectrum, based on coarsely subsampled data, may be compared. At many locations the spectrum is sufficently red that interannual frequencies remain unaffected. Intra-annual frequencies, however, must be interpreted with greater caution, and even interannual frequencies can be corrupted if the spectrum is flat. The results also suggest that whenever tides must be estimated directly from the altimetry, response methods of analysis are preferable to harmonic methods, even in nonlinear regimes; this will remain so for the foreseeable future. We concentrate on three example tide gauges: two coastal stations on the Malay Peninsula where the closely aliased K1 and Ssa tides are strong and at Canton Island where trapped equatorial waves are aliased.

  15. Seismicity and source spectra analysis in Salton Sea Geothermal Field

    Science.gov (United States)

    Cheng, Y.; Chen, X.

    2016-12-01

    The surge of "man-made" earthquakes in recent years has led to considerable concerns about the associated hazards. Improved monitoring of small earthquakes would significantly help understand such phenomena and the underlying physical mechanisms. In the Salton Sea Geothermal field in southern California, open access of a local borehole network provides a unique opportunity to better understand the seismicity characteristics, the related earthquake hazards, and the relationship with the geothermal system, tectonic faulting and other physical conditions. We obtain high-resolution earthquake locations in the Salton Sea Geothermal Field, analyze characteristics of spatiotemporal isolated earthquake clusters, magnitude-frequency distributions and spatial variation of stress drops. The analysis reveals spatial coherent distributions of different types of clustering, b-value distributions, and stress drop distribution. The mixture type clusters (short-duration rapid bursts with high aftershock productivity) are predominately located within active geothermal field that correlate with high b-value, low stress drop microearthquake clouds, while regular aftershock sequences and swarms are distributed throughout the study area. The differences between earthquakes inside and outside of geothermal operation field suggest a possible way to distinguish directly induced seismicity due to energy operation versus typical seismic slip driven sequences. The spatial coherent b-value distribution enables in-situ estimation of probabilities for M≥3 earthquakes, and shows that the high large-magnitude-event (LME) probability zones with high stress drop are likely associated with tectonic faulting. The high stress drop in shallow (1-3 km) depth indicates the existence of active faults, while low stress drops near injection wells likely corresponds to the seismic response to fluid injection. I interpret the spatial variation of seismicity and source characteristics as the result of fluid

  16. Space Environment Automated Alerts and Anomaly Analysis Assistant (SEA^5) for NASA

    Data.gov (United States)

    National Aeronautics and Space Administration — We propose to develop a comprehensive analysis and dissemination system (Space Environment Automated Alerts  & Anomaly Analysis Assistant: SEA5) that will...

  17. NOAA Optimum Interpolation 1/4 Degree Daily Sea Surface Temperature (OISST) Analysis, Version 2

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This high-resolution sea surface temperature (SST) analysis product was developed using an optimum interpolation (OI) technique. The SST analysis has a spatial grid...

  18. Understanding extreme sea levels for coastal impact and adaptation analysis

    Science.gov (United States)

    Wahl, T.; Haigh, I. D.; Nicholls, R. J.; Arns, A.; Hinkel, J.; Dangendorf, S.; Slangen, A.

    2016-12-01

    Coastal impact and adaptation assessments require detailed knowledge on extreme sea levels, because increasing damage due to extreme events, such as storm surges and tropical cyclones, is one of the major consequences of sea level rise and climate change. In fact, the IPCC has highlighted in its AR4 report that "societal impacts of sea level change primarily occur via the extreme levels rather than as a direct consequence of mean sea level changes". Over the last few decades, substantial research efforts have been directed towards improved understanding of past and future mean sea level; different scenarios were developed with process-based or semi-empirical models and used for coastal impact assessments at various spatial scales to guide coastal management and adaptation efforts. The uncertainties in future sea level rise are typically accounted for by analyzing the impacts associated with a range of scenarios leading to a vertical displacement of the distribution of extreme sea-levels. And indeed most regional and global studies find little or no evidence for changes in storminess with climate change, although there is still low confidence in the results. However, and much more importantly, there is still a limited understanding of present-day extreme sea-levels which is largely ignored in most impact and adaptation analyses. The two key uncertainties stem from: (1) numerical models that are used to generate long time series of extreme sea-levels. The bias of these models varies spatially and can reach values much larger than the expected sea level rise; but it can be accounted for in most regions making use of in-situ measurements; (2) Statistical models used for determining present-day extreme sea-level exceedance probabilities. There is no universally accepted approach to obtain such values for flood risk assessments and while substantial research has explored inter-model uncertainties for mean sea level, we explore here, for the first time, inter

  19. Morphometric analysis of the Marmara Sea river basins, Turkey

    Science.gov (United States)

    Elbaşı, Emre; Ozdemir, Hasan

    2014-05-01

    The drainage basin, the fundamental unit of the fluvial landscape, has been focus of research aimed at understanding the geometric characteristics of the master channel and its tributary network. This geometry is referred to as the basin morphometry and is nicely reviewed by Abrahams (1984). A great amount of research has focused on geometric characteristic of drainage basins, including the topology of the stream networks, and quantitative description of drainage texture, pattern, shape, and relief characteristics. Evaluation of morphometric parameters necessitates the analysis of various drainage parameters such as ordering of the various streams, measurement of basin area and perimeter, length of drainage channels, drainage density (Dd), stream frequency (Fs), bifurcation ratio (Rb), texture ratio (T), basin relief (Bh), Ruggedness number (Rn), time of concentration (Tc), hypsometric curve and integral (Hc and Hi) (Horton, 1932, Schumn, 1956, Strahler, 1957; Verstappen 1983; Keller and Pinter, 2002; Ozdemir and Bird, 2009). These morphometric parameters have generally been used to predict flood peaks, to assess sediment yield, and to estimate erosion rates in the basins. River basins of the Marmara Sea, has an area of approximately 40,000 sqkm, are the most important basins in Turkey based on their dense populations, industry and transportation systems. The primary aim of this study is to determine and analyse of morphometric characteristics of the Marmara Sea river basins using 10 m resolution Digital Elevation Model (DEM) and to evaluate of the results. For these purposes, digital 10 m contour maps scaled 1:25000 and geological maps scaled 1:100000 were used as the main data sources in the study. 10 m resolution DEM data were created using the contour maps and then drainage networks and their watersheds were extracted using D8 pour point model. Finally, linear, areal and relief morphometries were applied to the river basins using Geographic Information Systems

  20. Multi-locus phylogeography of the dusky dolphin (Lagenorhynchus obscurus: passive dispersal via the west-wind drift or response to prey species and climate change?

    Directory of Open Access Journals (Sweden)

    Würsig Bernd

    2007-08-01

    Full Text Available Abstract Background The dusky dolphin (Lagenorhynchus obscurus is distributed along temperate, coastal regions of New Zealand, South Africa, Argentina, and Peru where it feeds on schooling anchovy, sardines, and other small fishes and squid tightly associated with temperate ocean sea surface temperatures. Previous studies have suggested that the dusky dolphin dispersed in the Southern Hemisphere eastward from Peru via a linear, temperate dispersal corridor provided by the circumpolar west-wind drift. With new mitochondrial and nuclear DNA sequence data, we propose an alternative phylogeographic history for the dusky dolphin that was structured by paleoceanographic conditions that repeatedly altered the distribution of its temperate prey species during the Plio-Pleistocene. Results In contrast to the west-wind drift hypothesis, phylogenetic analyses support a Pacific/Indian Ocean origin, with a relatively early and continued isolation of Peru from other regions. Dispersal of the dusky dolphin into the Atlantic is correlated with the history of anchovy populations, including multiple migrations from New Zealand to South Africa. Additionally, the cooling of the Eastern Equatorial Pacific led to the divergence of anchovy populations, which in turn explains the north-south equatorial transgression of L. obliquidens and the subsequent divergence of L. obscurus in the Southern Hemisphere. Conclusion Overall, our study fails to support the west-wind drift hypothesis. Instead, our data indicate that changes in primary productivity and related abundance of prey played a key role in shaping the phylogeography of the dusky dolphin, with periods of ocean change coincident with important events in the history of this temperate dolphin species. Moderate, short-term changes in sea surface temperatures and current systems have a powerful effect on anchovy populations; thus, it is not infeasible that repeated fluctuations in anchovy populations continue to play

  1. Statistical analysis of global surface temperature and sea level using cointegration methods

    DEFF Research Database (Denmark)

    Schmidt, Torben; Johansen, Søren; Thejll, Peter

    2012-01-01

    Global sea levels are rising which is widely understood as a consequence of thermal expansion and melting of glaciers and land-based ice caps. Due to the lack of representation of ice-sheet dynamics in present-day physically-based climate models being unable to simulate observed sea level trends......, semi-empirical models have been applied as an alternative for projecting of future sea levels. There is in this, however, potential pitfalls due to the trending nature of the time series. We apply a statistical method called cointegration analysis to observed global sea level and land-ocean surface air...... temperature, capable of handling such peculiarities. We find a relationship between sea level and temperature and find that temperature causally depends on the sea level, which can be understood as a consequence of the large heat capacity of the ocean. We further find that the warming episode in the 1940s...

  2. Analysis of Sea Level Rise in Singapore Strait

    Science.gov (United States)

    Tkalich, Pavel; Luu, Quang-Hung

    2013-04-01

    Sea level in Singapore Strait is governed by various scale phenomena, from global to local. Global signals are dominated by the climate change and multi-decadal variability and associated sea level rise; at regional scale seasonal sea level variability is caused by ENSO-modulated monsoons; locally, astronomic tides are the strongest force. Tide gauge records in Singapore Strait are analyzed to derive local sea level trend, and attempts are made to attribute observed sea level variability to phenomena at various scales, from global to local. It is found that at annual scale, sea level anomalies in Singapore Strait are quasi-periodic, of the order of ±15 cm, the highest during northeast monsoon and the lowest during southwest monsoon. Interannual regional sea level falls are associated with El Niño events, while the rises are related to La Niña episodes; both variations are in the range of ±9 cm. At multi-decadal scale, sea level in Singapore Strait has been rising at the rate 1.2-1.9 mm/year for the period 1975-2009, 2.0±0.3 mm/year for 1984-2009, and 1.3-4.7 mm/year for 1993-2009. When compared with the respective global trends of 2.0±0.3, 2.4, and 2.8±0.8 mm/year, Singapore Strait sea level rise trend was weaker at the earlier period and stronger at the recent decade.

  3. Safety during sea transport of radioactive materials. Probabilistic safety analysis of package fro sea surface fire accident

    International Nuclear Information System (INIS)

    Matsuoka, Takeshi; Obara, Isonori; Akutsu, Yukio; Aritomi, Masanori

    2000-01-01

    The ships carrying irradiated nuclear fuel, plutonium and high level radioactive wastes(INF materials) are designed to keep integrity of packaging based on the various safety and fireproof measures, even if the ship encounters a maritime fire accident. However, granted that the frequency is very low, realistic severe accidents should be evaluated. In this paper, probabilistic safety assessment method is applied to evaluate safety margin for severe sea fire accidents using event tree analysis. Based on our separate studies, the severest scenario was estimated as follows; an INF transport ship collides with oil tanker and induces a sea surface fire. Probability data such as ship's collision, oil leakage, ignition, escape from fire region, operations of cask cooling system and water flooding systems were also introduced from above mentioned studies. The results indicate that the probability of which packages cannot keep their integrity during the sea surface fire accident is very low and sea transport of INF materials is carried out very safely. (author)

  4. Oceanographic survey for radioactivity analysis in the South Sea of Korea

    International Nuclear Information System (INIS)

    Jung, Kyu Kui; Jeong, Chang Soo; Choi, Yang Ho

    2006-12-01

    The objectives of this work are to collect and provide the samples for radioactivity analysis and the fundamental data for the understanding of distribution and function of radioactive materials through oceanographic investigation and analysis in the South Sea of Korea. To achieve the objectives, we conducted twice oceanographic surveys and analyzed the oceanographic characteristics in the South Sea of Korea. In addition, for the radioactivity analysis, water samples and various marine organism were collected and provided to KINS

  5. Oceanographic survey for radioactivity analysis in the South Sea of Korea

    International Nuclear Information System (INIS)

    Choi, Yong Kyu; Lee, Sam Keum; Lee, Yong Hwa; Choi, Ok In; Oh, Hyun Ju; Seo, Young Il; Yang, Jun Hyuk; Jung, Ra Young

    2005-12-01

    The objectives of this work are to collect and provide the samples for radioactivity analysis and the fundamental data for the understanding of distribution and function of radioactive materials through oceanographic investigation and analysis in the South Sea of Korea. To achieve the objectives, we conducted twice oceanographic surveys and analyzed the oceanographic characteristics in the South Sea of Korea. In addition, for the radioactivity analysis, water samples and various marine organism were collected and provided to KINS

  6. GEOGRAPHICAL ANALYSIS OF THE COASTAL FLORA OF THE AZOV SEA

    Directory of Open Access Journals (Sweden)

    Kolomiychuk V. P.

    2012-11-01

    Full Text Available Quantitative indicators of the coastal flora of the Azov Sea are presented. Geographical features of the flora of the region have been analyzed. The major endemic complexes of the flora being investigated are described.

  7. The Fourth SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-4)

    Science.gov (United States)

    Hooker, Stanford B.; Thomas, Crystal S.; van Heukelem, Laurie; Schlueter, louise; Russ, Mary E.; Ras, Josephine; Claustre, Herve; Clementson, Lesley; Canuti, Elisabetta; Berthon, Jean-Francois; hide

    2010-01-01

    Ten international laboratories specializing in the determination of marine pigment concentrations using high performance liquid chromatography (HPLC) were intercompared using in situ samples and a mixed pigment sample. Although prior Sea-viewing Wide Field-of-view Sensor (SeaWiFS) High Performance Liquid Chromatography (HPLC) Round-Robin Experiment (SeaHARRE) activities conducted in open-ocean waters covered a wide dynamic range in productivity, and some of the samples were collected in the coastal zone, none of the activities involved exclusively coastal samples. Consequently, SeaHARRE-4 was organized and executed as a strictly coastal activity and the field samples were collected from primarily eutrophic waters within the coastal zone of Denmark. The more restrictive perspective limited the dynamic range in chlorophyll concentration to approximately one and a half orders of magnitude (previous activities covered more than two orders of magnitude). The method intercomparisons were used for the following objectives: a) estimate the uncertainties in quantitating individual pigments and higher-order variables formed from sums and ratios; b) confirm if the chlorophyll a accuracy requirements for ocean color validation activities (approximately 25%, although 15% would allow for algorithm refinement) can be met in coastal waters; c) establish the reduction in uncertainties as a result of applying QA procedures; d) show the importance of establishing a properly defined referencing system in the computation of uncertainties; e) quantify the analytical benefits of performance metrics, and f) demonstrate the utility of a laboratory mix in understanding method performance. In addition, the remote sensing requirements for the in situ determination of total chlorophyll a were investigated to determine whether or not the average uncertainty for this measurement is being satisfied.

  8. Analysis of Polluted Oily Water Management in Klaipėda Sea Port Klaipėda sea port contaminated oily water management analysis

    OpenAIRE

    Goda Zobėlaitė; Jolanta Dvarionienė; Gediminas Stonkus

    2010-01-01

    Lithuania is one of the countries that have ratified the Marpol 73/78 Convention which foresees the tools of reduction and prevention of sea pollution with bilge water and other substances. The Directive of the European Parliament and Council 2000/59/EB is addressed to the reduction of waste on board of ships and its wash overboard..
    Analysis of the ships entering Klaipėda Sea Port has estimated that oil waste comprises about 74 % of the whole collected waste amount. The analysis o...

  9. Identification of five sea cucumber species through PCR-RFLP analysis

    Science.gov (United States)

    Lv, Yingchun; Zheng, Rong; Zuo, Tao; Wang, Yuming; Li, Zhaojie; Xue, Yong; Xue, Changhu; Tang, Qingjuan

    2014-10-01

    Sea cucumbers are traditional marine food and Chinese medicine in Asia. The rapid expansion of sea cucumber market has resulted in various problems, such as commercial fraud and mislabeling. Conventionally, sea cucumber species could be distinguished by their morphological and anatomical characteristics; however, their identification becomes difficult when they are processed. The aim of this study was to develop a new convenient method of identifying and distinguishing sea cucumber species. Polymerase chain reaction-restriction fragment length polymorphism (PCR-RFLP) analysis of mitochondrial cytochrome oxidase I gene ( COI) was used to identifing five sea cucumber species ( Apostichopus japonicus, Cucumaria frondosa, Thelenota ananas, Parastichopus californicus and Actinopyga lecanora). A 692 bp fragment of COI was searched for BamHI, KpnI, PstI, XbaI and Eco31I restriction sites with DNAMAN 6.0, which were then used to PCR-RFLP analysis. These five sea cucumber species can be discriminated from mixed sea cucumbers. The developed PCR-RFLP assay will facilitate the identification of sea cucumbers, making their source tracing and quality controlling feasible.

  10. The nonlinear Fourier analysis of internal solitons in the Andaman sea

    International Nuclear Information System (INIS)

    Osborne, A.R.; Provenzale, A.; Bergamasco, L.

    1983-01-01

    A preliminary spectral analysis of large-amplitude internal solitons in the Andaman Sea was conducted, employing method based upon the spectral (or scattering) transform solution of the Korteweg-de Vries equation

  11. AFSC/ABL: 2008 Chum Salmon Bycatch Sample Analysis Bering Sea

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2008 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was...

  12. AFSC/ABL: 2007 Chum Salmon Bycatch Sample Analysis Bering Sea

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2007 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was...

  13. AFSC/ABL: 2012 Chum Salmon Bycatch Sample Analysis Bering Sea

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch from the 2012 Bering Sea walleye pollock (Gadus chalcogrammus) trawl fishery was...

  14. AFSC/ABL: 2009 Chum Salmon Bycatch Sample Analysis Bering Sea

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2009 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was...

  15. AFSC/ABL: 2010 Chum Salmon Bycatch Sample Analysis Bering Sea

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2010 Bering Sea groundfish trawl fishery was undertaken to determine the...

  16. AFSC/ABL: 2011 Chum Salmon Bycatch Sample Analysis Bering Sea

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch from the 2011 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was...

  17. Extended Reconstructed Sea Surface Temperature (ERSST) Monthly Analysis, Version 3b

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Version 3b (v3b) of the Extended Reconstructed Sea Surface Temperature (ERSST) dataset is a monthly SST analysis on a 2-degree global grid based on the International...

  18. AFSC/ABL: 2005 Chum Salmon Bycatch Sample Analysis Bering Sea

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2005 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was...

  19. AFSC/ABL: 2006 Chum Salmon Bycatch Sample Analysis Bering Sea

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A genetic analysis of samples from the chum salmon (Oncorhynchus keta) bycatch of the 2006 Bering Sea walleye pollock (Theragra chalcogramma) trawl fishery was...

  20. GHRSST Level 4 MUR Global Foundation Sea Surface Temperature Analysis (v4.1) (GDS versions 1 and 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced as a retrospective dataset (four day latency) and...

  1. GHRSST Level 4 RTO Terra MODIS-AMSRE Day North America Regional Blended Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the JPL Physical...

  2. GHRSST Level 4 RTO Terra MODIS-AMSRE Night North America Regional Blended Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the JPL Physical...

  3. GHRSST Level 4 ODYSSEA North-Western Europe Regional Foundation Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at Ifremer/CERSAT...

  4. GHRSST Level 4 RTO Aqua MODIS-AMSRE Night North America Regional Blended Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the JPL Physical...

  5. GHRSST Level 4 RTO Aqua MODIS-AMSRE Day North America Regional Blended Sea Surface Temperature Analysis (GDS version 1)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature analysis produced daily on an operational basis at the JPL Physical...

  6. GHRSST Level 4 CMC0.1deg Global Foundation Sea Surface Temperature Analysis (GDS version 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature (SST) analysis produced daily on an operational basis at the Canadian...

  7. GHRSST Level 4 REMO_OI_SST_5km Regional Foundation Sea Surface Temperature Analysis (GDS version 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature (SST) analysis produced daily on an operational basis by the...

  8. GHRSST Level 4 CMC0.2deg Global Foundation Sea Surface Temperature Analysis (GDS version 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) Level 4 sea surface temperature (SST) analysis produced daily on an operational basis at the Canadian...

  9. GHRSST Level 4 MW_IR_OI Global Foundation Sea Surface Temperature analysis (GDS versions 1 and 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) global Level 4 sea surface temperature analysis produced daily on a 0.81 degree grid at Remote Sensing...

  10. Analysis and Prediction of Sea Ice Evolution using Koopman Mode Decomposition Techniques

    Science.gov (United States)

    2018-04-30

    Resources: N/A TOTAL: $18,687 2 TECHNICAL STATUS REPORT Abstract The program goal is analysis of sea ice dynamical behavior using Koopman Mode Decompo...Title: Analysis and Prediction of Sea Ice Evolution using Koopman Mode Decomposition Techniques Subject: Monthly Progress Report Period of...Attn: Code 5596 4555 Overlook Avenue, SW Washington, D.C. 20375-5320 E-mail: reports@library.nrl.navy.mil Defense Technical Information Center

  11. Analysis of Ship Groundings on Soft Sea Beds

    DEFF Research Database (Denmark)

    Simonsen, Bo Cerup; Pedersen, Preben Terndrup

    1997-01-01

    it influences the ship heave and pitch motions as well as the friction between the ship and the soil.In this paper a rational calculation model is presented for the sea bed soil reaction forces on the ship bottom. The model is based on the assumption that the penetration of the ship bow generates a flow of pore......The consequences associated with ships running aground depend very much on the soil characteristics of the sea bed and the geometrical shape of the ship bow. The penetration into the sea bed depends on these factors and the penetration is an important factor for the ship motion because...... by the theory of frictional soils in rupture. Frictional stresses on the bow surface are assumed to be related to the normal pressure by a simple Coulumb relation. The total soil reaction as a function of velocity and penetration is found by integration of normal pressure and frictional stresses over...

  12. Low incidence of clonality in cold water corals revealed through the novel use of a standardized protocol adapted to deep sea sampling

    Science.gov (United States)

    Becheler, Ronan; Cassone, Anne-Laure; Noël, Philippe; Mouchel, Olivier; Morrison, Cheryl L.; Arnaud-Haond, Sophie

    2017-11-01

    Sampling in the deep sea is a technical challenge, which has hindered the acquisition of robust datasets that are necessary to determine the fine-grained biological patterns and processes that may shape genetic diversity. Estimates of the extent of clonality in deep-sea species, despite the importance of clonality in shaping the local dynamics and evolutionary trajectories, have been largely obscured by such limitations. Cold-water coral reefs along European margins are formed mainly by two reef-building species, Lophelia pertusa and Madrepora oculata. Here we present a fine-grained analysis of the genotypic and genetic composition of reefs occurring in the Bay of Biscay, based on an innovative deep-sea sampling protocol. This strategy was designed to be standardized, random, and allowed the georeferencing of all sampled colonies. Clonal lineages discriminated through their Multi-Locus Genotypes (MLG) at 6-7 microsatellite markers could thus be mapped to assess the level of clonality and the spatial spread of clonal lineages. High values of clonal richness were observed for both species across all sites suggesting a limited occurrence of clonality, which likely originated through fragmentation. Additionally, spatial autocorrelation analysis underlined the possible occurrence of fine-grained genetic structure in several populations of both L. pertusa and M. oculata. The two cold-water coral species examined had contrasting patterns of connectivity among canyons, with among-canyon genetic structuring detected in M. oculata, whereas L. pertusa was panmictic at the canyon scale. This study exemplifies that a standardized, random and georeferenced sampling strategy, while challenging, can be applied in the deep sea, and associated benefits outlined here include improved estimates of fine grained patterns of clonality and dispersal that are comparable across sites and among species.

  13. Seismic stratigraphy and regional unconformity analysis of Chukchi Sea Basins

    Science.gov (United States)

    Agasheva, Mariia; Karpov, Yury; Stoupakova, Antonina; Suslova, Anna

    2017-04-01

    Russian Chukchi Sea Shelf one of petroleum potential province and still one of the most uninvestigated area. North and Sough Chukchi Trough that separated by Wrangel-Hearld Arch have different origin. The main challenge is stratigraphic sequences determination that filled North and South Chukchi basins. The joint tectonic evolution of the territory as Canada basin opening and Brooks Range-Wrangel Herald orogenic events enable to expect the analogous stratigraphy sequences in Russian Part. Analysis of 2D seismic data of Russian and American Chukchi Sea represent the major seismic reflectance that traced throughout the basins. Referring to this data North Chukchi basin includes four seismic stratigraphic sequences - Franklian (pre-Mississippian), Ellesmirian (Upper Devonian-Jurassic), Beaufortian (Jurassic-Lower Cretaceous) and Brookian (Lower Cretaceous-Cenozoic), as it is in North Slope Alaska [1]. South Chukchi basin has different tectonic nature, representing only Franclian basement and Brookian sequences. Sedimentary cover of North Chukchi basins starts with Ellesmirian sequence it is marked by bright reflector that separates from chaotic folded Franklian sequence. Lower Ellesmirian sequence fills of grabens that formed during upper Devonian rifting. Devonian extension event was initiated as a result of Post-Caledonian orogenic collapse, terminating with the opening of Arctic oceans. Beaufortian sequence is distinguished in Colville basin and Hanna Trough by seismically defined clinoforms. Paleozoic and Mesozoic strata are eroded by regional Lower Cretaceous Unconformity (LCU) linked with Canada basin opening. LCU is defined at seismic by angular unconformity, tracing at most arctic basins. Lower Cretaceous erosion and uplift event are of Hauterivian to Aptian age in Brooks Range and the Loppa High uplift refer to the early Barremian. The Lower Cretaceous clinoform complex downlaps to LCU horizon and filling North Chukchi basin (as in Colville basin Alska

  14. Distribution by origin and sea age of Atlantic salmon (Salmo salar) in the sea around the Faroe Islands based on analysis of historical tag recoveries

    DEFF Research Database (Denmark)

    Jacobsen, Jan Arge; Hansen, Lars P.; Bakkestuen, Vegar

    2012-01-01

    Distribution by origin and sea age of Atlantic salmon (Salmo salar) in the sea around the Faroe Islands based on analysis of historical tag recoveries. – ICES Journal of Marine Science, 69: 1598–1608.A database of 2651 tags applied to Atlantic salmon (Salmo salar) smolts in 13 countries...

  15. Statistical Analysis of SSMIS Sea Ice Concentration Threshold at the Arctic Sea Ice Edge during Summer Based on MODIS and Ship-Based Observational Data.

    Science.gov (United States)

    Ji, Qing; Li, Fei; Pang, Xiaoping; Luo, Cong

    2018-04-05

    The threshold of sea ice concentration (SIC) is the basis for accurately calculating sea ice extent based on passive microwave (PM) remote sensing data. However, the PM SIC threshold at the sea ice edge used in previous studies and released sea ice products has not always been consistent. To explore the representable value of the PM SIC threshold corresponding on average to the position of the Arctic sea ice edge during summer in recent years, we extracted sea ice edge boundaries from the Moderate-resolution Imaging Spectroradiometer (MODIS) sea ice product (MOD29 with a spatial resolution of 1 km), MODIS images (250 m), and sea ice ship-based observation points (1 km) during the fifth (CHINARE-2012) and sixth (CHINARE-2014) Chinese National Arctic Research Expeditions, and made an overlay and comparison analysis with PM SIC derived from Special Sensor Microwave Imager Sounder (SSMIS, with a spatial resolution of 25 km) in the summer of 2012 and 2014. Results showed that the average SSMIS SIC threshold at the Arctic sea ice edge based on ice-water boundary lines extracted from MOD29 was 33%, which was higher than that of the commonly used 15% discriminant threshold. The average SIC threshold at sea ice edge based on ice-water boundary lines extracted by visual interpretation from four scenes of the MODIS image was 35% when compared to the average value of 36% from the MOD29 extracted ice edge pixels for the same days. The average SIC of 31% at the sea ice edge points extracted from ship-based observations also confirmed that choosing around 30% as the SIC threshold during summer is recommended for sea ice extent calculations based on SSMIS PM data. These results can provide a reference for further studying the variation of sea ice under the rapidly changing Arctic.

  16. Atmospheric forcing of decadal Baltic Sea level variability in the last 200 years. A statistical analysis

    Energy Technology Data Exchange (ETDEWEB)

    Huenicke, B. [GKSS-Forschungszentrum Geesthacht GmbH (Germany). Inst. fuer Kuestenforschung

    2008-11-06

    This study aims at the estimation of the impact of different atmospheric factors on the past sealevel variations (up to 200 years) in the Baltic Sea by statistically analysing the relationship between Baltic Sea level records and observational and proxy-based reconstructed climatic data sets. The focus lies on the identification and possible quantification of the contribution of sealevel pressure (wind), air-temperature and precipitation to the low-frequency (decadal and multi-decadal) variability of Baltic Sea level. It is known that the wind forcing is the main factor explaining average Baltic Sea level variability at inter-annual to decadal timescales, especially in wintertime. In this thesis it is statistically estimated to what extent other regional climate factors contribute to the spatially heterogeneous Baltic Sea level variations around the isostatic trend at multi-decadal timescales. Although the statistical analysis cannot be completely conclusive, as the potential climate drivers are all statistically interrelated to some degree, the results indicate that precipitation should be taken into account as an explanatory variable for sea-level variations. On the one hand it has been detected that the amplitude of the annual cycle of Baltic Sea level has increased throughout the 20th century and precipitation seems to be the only factor among those analysed (wind through SLP field, barometric effect, temperature and precipitation) that can account for this evolution. On the other hand, precipitation increases the ability to hindcast inter-annual variations of sea level in some regions and seasons, especially in the Southern Baltic in summertime. The mechanism by which precipitation exerts its influence on Baltic Sea level is not ascertained in this statistical analysis due to the lack of long salinity time series. This result, however, represents a working hypothesis that can be confirmed or disproved by long simulations of the Baltic Sea system - ocean

  17. Analysis of North Sea Offshore Wind Power Variability

    NARCIS (Netherlands)

    Buatois, A.; Gibescu, M.; Rawn, B.G.; Van der Meijden, M.A.M.M.

    2014-01-01

    This paper evaluates, for a 2030 scenario, the impact on onshore power systems in terms of the variability of the power generated by 81 GW of offshore wind farms installed in the North Sea. Meso-scale reanalysis data are used as input for computing the hourly power production for offshore wind

  18. Safety analysis of sea transportation of solidified reactor wastes

    International Nuclear Information System (INIS)

    Devell, L.; Edlund, O.; Kjellbert, N.; Grundfelt, B.; Milchert, T.

    1980-06-01

    A central handling and storage facility (ALMA) for low- and medium-level reactor waste from Swedish nuclear power plants is being planned and the transportation to it will be by sea. A safety assessment devoted to the potential environmental impacts from the transportation is presented. (Auth.)

  19. A novel multi-locus sequence typing (MLST) protocol for Leuconostoc lactis isolates from traditional dairy products in China and Mongolia.

    Science.gov (United States)

    Dan, Tong; Liu, Wenjun; Sun, Zhihong; Lv, Qiang; Xu, Haiyan; Song, Yuqin; Zhang, Heping

    2014-06-09

    Economically, Leuconostoc lactis is one of the most important species in the genus Leuconostoc. It plays an important role in the food industry including the production of dextrans and bacteriocins. Currently, traditional molecular typing approaches for characterisation of this species at the isolate level are either unavailable or are not sufficiently reliable for practical use. Multilocus sequence typing (MLST) is a robust and reliable method for characterising bacterial and fungal species at the molecular level. In this study, a novel MLST protocol was developed for 50 L. lactis isolates from Mongolia and China. Sequences from eight targeted genes (groEL, carB, recA, pheS, murC, pyrG, rpoB and uvrC) were obtained. Sequence analysis indicated 20 different sequence types (STs), with 13 of them being represented by a single isolate. Phylogenetic analysis based on the sequences of eight MLST loci indicated that the isolates belonged to two major groups, A (34 isolates) and B (16 isolates). Linkage disequilibrium analyses indicated that recombination occurred at a low frequency in L. lactis, indicating a clonal population structure. Split-decomposition analysis indicated that intraspecies recombination played a role in generating genotypic diversity amongst isolates. Our results indicated that MLST is a valuable tool for typing L. lactis isolates that can be used for further monitoring of evolutionary changes and population genetics.

  20. Statistical Energy Analysis (SEA) and Energy Finite Element Analysis (EFEA) Predictions for a Floor-Equipped Composite Cylinder

    Science.gov (United States)

    Grosveld, Ferdinand W.; Schiller, Noah H.; Cabell, Randolph H.

    2011-01-01

    Comet Enflow is a commercially available, high frequency vibroacoustic analysis software founded on Energy Finite Element Analysis (EFEA) and Energy Boundary Element Analysis (EBEA). Energy Finite Element Analysis (EFEA) was validated on a floor-equipped composite cylinder by comparing EFEA vibroacoustic response predictions with Statistical Energy Analysis (SEA) and experimental results. Statistical Energy Analysis (SEA) predictions were made using the commercial software program VA One 2009 from ESI Group. The frequency region of interest for this study covers the one-third octave bands with center frequencies from 100 Hz to 4000 Hz.

  1. Analysis of Delayed Sea Breeze Onset for Fort Ord Prescribed Burning Operations

    Science.gov (United States)

    2015-12-01

    DELAYED SEA BREEZE ONSET FOR FORT ORD PRESCRIBED BURNING OPERATIONS by Dustin D. Hocking December 2015 Thesis Advisor: Wendell Nuss Second...AND DATES COVERED Master’s thesis 4. TITLE AND SUBTITLE ANALYSIS OF DELAYED SEA BREEZE ONSET FOR FORT ORD PRESCRIBED BURNING OPERATIONS 5...release; distribution is unlimited 12b. DISTRIBUTION CODE 13. ABSTRACT (maximum 200 words) The U.S. Army conducts prescribed burns at Fort Ord

  2. Use of offshore mooring platform for sea wave motion analysis

    International Nuclear Information System (INIS)

    Cicconi, G.; Dagnino, I.; Papa, L.

    1979-01-01

    An offshore mooring platform for supertankers may often turn out to be an ideal solution for the problem of installing a meteorological station. Its location may be particularly desirable for the purpose of recording and analysing sea wave motion in deep water or in the intermediate zone between shallow and deep water. The preliminary results obtained through the operation of a subsurface sensor at the mooring platform off the harbour of Genova are reported. (author)

  3. Use of offshore mooring platform for sea wave motion analysis

    Energy Technology Data Exchange (ETDEWEB)

    Cicconi, G.; Dagnino, I.; Papa, L. (Genova Univ. (Italy). Ist. Geofisica e Geodetico); Basano, L.; Ottonello, P. (Genoa Univ. (Italy))

    An offshore mooring platform for supertankers may often turn out to be an ideal solution for the problem of installing a meteorological station. Its location may be particularly desirable for the purpose of recording and analysing sea wave motion in deep water or in the intermediate zone between shallow and deep water. The preliminary results obtained through the operation of a subsurface sensor at the mooring platform off the harbour of Genova are reported.

  4. Topography of multi-locus deletions induced by gamma-rays and neutrons in the black, cinnabar and vestigial regions of drosophila melanogaster

    International Nuclear Information System (INIS)

    Alexandrov, I.V.; Lapidus, I.L.; Alexandrova, M.V.

    1997-01-01

    The extend and breakpoint location of 85 chromosomal-scale deletions induced by gamma-rays or fission neutrons in the black, cinnabar and vestigial regions of Drosophila genome have been examined by conventional cytogenetic analysis of the polytene chromosomes. It was found that the topographies of deletions are similar for both type of radiation and for all regions under study: the largest deletions have 3.5 Mb length, i.e. more than 2 divisions of the polytene chromosome; the breakpoints of deletions are located within the inter-bands and mapped more often in the centro-metric directions; the sizes of deletions are multiple to one, two or more visible chromomeres of polytene chromosome. These findings seem to be very well explained within the framework of the rosette-loopy model of higher (super-chromosome) level of the chromatin organization and of the notions about the illegitimate recombination promoted by the clustered damages of the core DNA resulting from the one-hit events of energy deposition at this target supported by the linear relationship observed between the delation yield and the dose of radiations studied. (authors)

  5. ANALYSIS OF SEA WATER POLLUTION IN COASTAL MARINE DISTRICT TUBAN TO THE QUALITY STANDARDS OF SEA WATER WITH USING STORET METHOD

    Directory of Open Access Journals (Sweden)

    Perdana Ixbal Spanton

    2017-05-01

    Full Text Available The sea water is a component that interacts with the terrestrial environment, where sewage from the land will lead to the sea. Waste containing these pollutants will enter into coastal waters and marine ecosystems. Partially soluble in water, partially sinks to the bottom and was concentrated sediment, and partly into the body tissues of marine organisms. This study was conducted to determine the level of pollution of sea water on the coast in the district of Tuban. This research was conducted in the Coastal Water Tuban, East Java. The main material used in research on Analysis of Water Pollution in Coastal Sea on Tuban. The method used in this research is using storet method and compared to the quality standards of the Environment Decree No. 51 in 2004. Based on the analysis of testing at five sampling point’s seawater around Bodies Tuban, obtained by sea water quality measurement results either in physics, chemistry, and microbiology varied. The level of pollution of sea water around Coastal Tuban obtained by using Storet Method average value of analysis is -4.2 included in class B are lightly blackened, while using values obtained Pollution Index average pollution index of 3.60 is included in the category lightly blackened. Keywords: Analysis of the pollution level of seawater on the coast in Tuban, Quality Standards of Sea Water, Storet Method.

  6. Future Arctic marine access: analysis and evaluation of observations, models, and projections of sea ice

    Directory of Open Access Journals (Sweden)

    T. S. Rogers

    2013-02-01

    Full Text Available There is an emerging need for regional applications of sea ice projections to provide more accuracy and greater detail to scientists, national, state and local planners, and other stakeholders. The present study offers a prototype for a comprehensive, interdisciplinary study to bridge observational data, climate model simulations, and user needs. The study's first component is an observationally based evaluation of Arctic sea ice trends during 1980–2008, with an emphasis on seasonal and regional differences relative to the overall pan-Arctic trend. Regional sea ice loss has varied, with a significantly larger decline of winter maximum (January–March extent in the Atlantic region than in other sectors. A lead–lag regression analysis of Atlantic sea ice extent and ocean temperatures indicates that reduced sea ice extent is associated with increased Atlantic Ocean temperatures. Correlations between the two variables are greater when ocean temperatures lag rather than lead sea ice. The performance of 13 global climate models is evaluated using three metrics to compare sea ice simulations with the observed record. We rank models over the pan-Arctic domain and regional quadrants and synthesize model performance across several different studies. The best performing models project reduced ice cover across key access routes in the Arctic through 2100, with a lengthening of seasons for marine operations by 1–3 months. This assessment suggests that the Northwest and Northeast Passages hold potential for enhanced marine access to the Arctic in the future, including shipping and resource development opportunities.

  7. Sensitivity analysis of hydrogeological parameters affecting groundwater storage change caused by sea level rise

    Science.gov (United States)

    Shin, J.; Kim, K.-H.; Lee, K.-K.

    2012-04-01

    Sea level rise, which is one of the representative phenomena of climate changes caused by global warming, can affect groundwater system. The rising trend of the sea level caused by the global warming is reported to be about 3 mm/year for the most recent 10 year average (IPCC, 2007). The rate of sea level rise around the Korean peninsula is reported to be 2.30±2.22 mm/yr during the 1960-1999 period (Cho, 2002) and 2.16±1.77 mm/yr (Kim et al., 2009) during the 1968-2007 period. Both of these rates are faster than the 1.8±0.5 mm/yr global average for the similar 1961-2003 period (IPCC, 2007). In this study, we analyzed changes in the groundwater environment affected by the sea level rise by using an analytical methodology. We tried to find the most effective parameters of groundwater amount change in order to estimate the change in fresh water amount in coastal groundwater. A hypothetical island model of a cylindrical shape in considered. The groundwater storage change is bi-directional as the sea level rises according to the natural and hydrogeological conditions. Analysis of the computation results shows that topographic slope and hydraulic conductivity are the most sensitive factors. The contributions of the groundwater recharge rate and the thickness of aquifer below sea level are relatively less effective. In the island with steep seashore slopes larger than 1~2 degrees or so, the storage amount of fresh water in a coastal area increases as sea level rises. On the other hand, when sea level drops, the storage amount decreases. This is because the groundwater level also rises with the rising sea level in steep seashores. For relatively flat seashores, where the slope is smaller than around 1-2 degrees, the storage amount of coastal fresh water decreases when the sea level rises because the area flooded by the rising sea water is increased. The volume of aquifer fresh water in this circumstance is greatly reduced in proportion to the flooded area with the sea

  8. Comprehensive EST analysis of the symbiotic sea anemone, Anemonia viridis

    Directory of Open Access Journals (Sweden)

    Deleury Emeline

    2009-07-01

    Full Text Available Abstract Background Coral reef ecosystems are renowned for their diversity and beauty. Their immense ecological success is due to a symbiotic association between cnidarian hosts and unicellular dinoflagellate algae, known as zooxanthellae. These algae are photosynthetic and the cnidarian-zooxanthellae association is based on nutritional exchanges. Maintenance of such an intimate cellular partnership involves many crosstalks between the partners. To better characterize symbiotic relationships between a cnidarian host and its dinoflagellate symbionts, we conducted a large-scale EST study on a symbiotic sea anemone, Anemonia viridis, in which the two tissue layers (epiderm and gastroderm can be easily separated. Results A single cDNA library was constructed from symbiotic tissue of sea anemones A. viridis in various environmental conditions (both normal and stressed. We generated 39,939 high quality ESTs, which were assembled into 14,504 unique sequences (UniSeqs. Sequences were analysed and sorted according to their putative origin (animal, algal or bacterial. We identified many new repeated elements in the 3'UTR of most animal genes, suggesting that these elements potentially have a biological role, especially with respect to gene expression regulation. We identified genes of animal origin that have no homolog in the non-symbiotic starlet sea anemone Nematostella vectensis genome, but in other symbiotic cnidarians, and may therefore be involved in the symbiosis relationship in A. viridis. Comparison of protein domain occurrence in A. viridis with that in N. vectensis demonstrated an increase in abundance of some molecular functions, such as protein binding or antioxidant activity, suggesting that these functions are essential for the symbiotic state and may be specific adaptations. Conclusion This large dataset of sequences provides a valuable resource for future studies on symbiotic interactions in Cnidaria. The comparison with the closest

  9. Arctic sea-level reconstruction analysis using recent satellite altimetry

    DEFF Research Database (Denmark)

    Svendsen, Peter Limkilde; Andersen, Ole Baltazar; Nielsen, Allan Aasbjerg

    2014-01-01

    We present a sea-level reconstruction for the Arctic Ocean using recent satellite altimetry data. The model, forced by historical tide gauge data, is based on empirical orthogonal functions (EOFs) from a calibration period; for this purpose, newly retracked satellite altimetry from ERS-1 and -2...... and Envisat has been used. Despite the limited coverage of these datasets, we have made a reconstruction up to 82 degrees north for the period 1950–2010. We place particular emphasis on determining appropriate preprocessing for the tide gauge data, and on validation of the model, including the ability...

  10. Comprehensive EST analysis of the symbiotic sea anemone, Anemonia viridis.

    Science.gov (United States)

    Sabourault, Cécile; Ganot, Philippe; Deleury, Emeline; Allemand, Denis; Furla, Paola

    2009-07-23

    Coral reef ecosystems are renowned for their diversity and beauty. Their immense ecological success is due to a symbiotic association between cnidarian hosts and unicellular dinoflagellate algae, known as zooxanthellae. These algae are photosynthetic and the cnidarian-zooxanthellae association is based on nutritional exchanges. Maintenance of such an intimate cellular partnership involves many crosstalks between the partners. To better characterize symbiotic relationships between a cnidarian host and its dinoflagellate symbionts, we conducted a large-scale EST study on a symbiotic sea anemone, Anemonia viridis, in which the two tissue layers (epiderm and gastroderm) can be easily separated. A single cDNA library was constructed from symbiotic tissue of sea anemones A. viridis in various environmental conditions (both normal and stressed). We generated 39,939 high quality ESTs, which were assembled into 14,504 unique sequences (UniSeqs). Sequences were analysed and sorted according to their putative origin (animal, algal or bacterial). We identified many new repeated elements in the 3'UTR of most animal genes, suggesting that these elements potentially have a biological role, especially with respect to gene expression regulation. We identified genes of animal origin that have no homolog in the non-symbiotic starlet sea anemone Nematostella vectensis genome, but in other symbiotic cnidarians, and may therefore be involved in the symbiosis relationship in A. viridis. Comparison of protein domain occurrence in A. viridis with that in N. vectensis demonstrated an increase in abundance of some molecular functions, such as protein binding or antioxidant activity, suggesting that these functions are essential for the symbiotic state and may be specific adaptations. This large dataset of sequences provides a valuable resource for future studies on symbiotic interactions in Cnidaria. The comparison with the closest available genome, the sea anemone N. vectensis, as well as

  11. An analysis of mussel bed habitats in the Dutch Wadden Sea

    NARCIS (Netherlands)

    Brinkman, A.G.; Dankers, N.M.J.A.; Stralen, van M.

    2002-01-01

    A habitat suitability analysis for littoral mussel beds in the Dutch Wadden Sea was carried out. The analysis was based on the presence of mussel beds in the years 1960-1970, and a number of environmental characteristics: wave action, flow velocity, median grain size, emersion times and distance to

  12. Analysis of North Sea Offshore Wind Power Variability

    Directory of Open Access Journals (Sweden)

    Aymeric Buatois

    2014-05-01

    Full Text Available This paper evaluates, for a 2030 scenario, the impact on onshore power systems in terms of the variability of the power generated by 81 GW of offshore wind farms installed in the North Sea. Meso-scale reanalysis data are used as input for computing the hourly power production for offshore wind farms, and this total production is analyzed to identify the largest aggregated hourly power variations. Based on publicly available information, a simplified representation of the coastal power grid is built for the countries bordering the North Sea. Wind farms less than 60 km from shore are connected radially to the mainland, while the rest are connected to a hypothetical offshore HVDC (High-Voltage Direct Current power grid, designed such that wind curtailment does not exceed 1% of production. Loads and conventional power plants by technology and associated cost curves are computed for the various national power systems, based on 2030 projections. Using the MATLAB-based MATPOWER toolbox, the hourly optimal power flow for this regional hybrid AC/DC grid is computed for high, low and medium years from the meso-scale database. The largest net load variations are evaluated per market area and related to the extra load-following reserves that may be needed from conventional generators.

  13. Sea level reconstructions from altimetry and tide gauges using independent component analysis

    Science.gov (United States)

    Brunnabend, Sandra-Esther; Kusche, Jürgen; Forootan, Ehsan

    2017-04-01

    Many reconstructions of global and regional sea level rise derived from tide gauges and satellite altimetry used the method of empirical orthogonal functions (EOF) to reduce noise, improving the spatial resolution of the reconstructed outputs and investigate the different signals in climate time series. However, the second order EOF method has some limitations, e.g. in the separation of individual physical signals into different modes of sea level variations and in the capability to physically interpret the different modes as they are assumed to be orthogonal. Therefore, we investigate the use of the more advanced statistical signal decomposition technique called independent component analysis (ICA) to reconstruct global and regional sea level change from satellite altimetry and tide gauge records. Our results indicate that the used method has almost no influence on the reconstruction of global mean sea level change (1.6 mm/yr from 1960-2010 and 2.9 mm/yr from 1993-2013). Only different numbers of modes are needed for the reconstruction. Using the ICA method is advantageous for separating independent climate variability signals from regional sea level variations as the mixing problem of the EOF method is strongly reduced. As an example, the modes most dominated by the El Niño-Southern Oscillation (ENSO) signal are compared. Regional sea level changes near Tianjin, China, Los Angeles, USA, and Majuro, Marshall Islands are reconstructed and the contributions from ENSO are identified.

  14. De novo transcriptome assembly and positive selection analysis of an individual deep-sea fish.

    Science.gov (United States)

    Lan, Yi; Sun, Jin; Xu, Ting; Chen, Chong; Tian, Renmao; Qiu, Jian-Wen; Qian, Pei-Yuan

    2018-05-24

    High hydrostatic pressure and low temperatures make the deep sea a harsh environment for life forms. Actin organization and microtubules assembly, which are essential for intracellular transport and cell motility, can be disrupted by high hydrostatic pressure. High hydrostatic pressure can also damage DNA. Nucleic acids exposed to low temperatures can form secondary structures that hinder genetic information processing. To study how deep-sea creatures adapt to such a hostile environment, one of the most straightforward ways is to sequence and compare their genes with those of their shallow-water relatives. We captured an individual of the fish species Aldrovandia affinis, which is a typical deep-sea inhabitant, from the Okinawa Trough at a depth of 1550 m using a remotely operated vehicle (ROV). We sequenced its transcriptome and analyzed its molecular adaptation. We obtained 27,633 protein coding sequences using an Illumina platform and compared them with those of several shallow-water fish species. Analysis of 4918 single-copy orthologs identified 138 positively selected genes in A. affinis, including genes involved in microtubule regulation. Particularly, functional domains related to cold shock as well as DNA repair are exposed to positive selection pressure in both deep-sea fish and hadal amphipod. Overall, we have identified a set of positively selected genes related to cytoskeleton structures, DNA repair and genetic information processing, which shed light on molecular adaptation to the deep sea. These results suggest that amino acid substitutions of these positively selected genes may contribute crucially to the adaptation of deep-sea animals. Additionally, we provide a high-quality transcriptome of a deep-sea fish for future deep-sea studies.

  15. Topex-Poseidon analysis of sea level variability over the Atlantic Ocean

    Science.gov (United States)

    Catalan P-U, M.; Villares, P.; Catalan, M.; Gomez-Enri, J.

    2003-04-01

    The variability of sea level and surface geostrophic currents in Atlantic Ocean is investigated using 333 cycles of altimeter information obtained by TOPEX-POSEIDON satellite. After the improvements of orbit accuracy, the most important concern to studies of sea level variability from altimeter height data are related with the formalism used for modelling the altimetric measurement corrections. Presently, one of the main sources of potential error is the correction for atmospheric pressure loading, the so-called ‘inverse barometer effect’. As is well known, this correction is intended to adjust the sea surface elevation for the static effects of the downward force of the mass of the atmosphere on the sea surface, adjusted, in this oversimplified model in 1cm/mbar. The exact response of the sea surface to atmospheric pressure loading depends on the space and time scales of the pressure field and must be specially a concern at high latitudes where atmospheric pressure fluctuations are large due to the intensity of low pressure fields at these latitudes and the additional uncertainty in the model estimates of the local sea level pressure. To study these effects over the whole Atlantic Ocean we compute a linear regression adjustment and an Empirical Orthogonal Functions Decomposition (EOFD), between sea level variation without inverse barometer correction and the atmospheric pressure, in all the Topex-Poseidon cross points over the whole Atlantic, including both the Artic and Antarctic Oceans. We use the barometric factor computed from the linear regression to correct the satellite mean sea level variation, comparing the correlation with the pressure. Our results show an important improvement in the decorrelation between sea level and atmospheric pressure time series, compared with the use of Inverse Barometer model, at most of the satellite cross points. The complicated nature of sea level variability at high latitudes justify that EOFD analysis conclusions

  16. Failure analysis of motor bearing of sea water pump in nuclear power plant

    International Nuclear Information System (INIS)

    Bian Chunhua; Zhang Wei

    2015-01-01

    The motor bearing of sea water pump in Qinshan Phase II Nuclear Power plant broke after only one year's using. This paper introduces failure analysis process of the motor bearing. Chemical composition analysis, metallic phase analysis, micrographic examination, and hardness analysis, dimension analysis of each part of the bearing, as well as the high temperature and low temperature performance analysis of lubricating grease are performed. According to the analysis above mentioned, the failure mode of the bearing is wearing, and the reason of wearing is inappropriate installation of the bearing. (authors)

  17. Egypt’s Red Sea Coast: Phylogenetic analysis of cultured microbial consortia in industrialized sites

    Directory of Open Access Journals (Sweden)

    Ghada A. Mustafa

    2014-08-01

    Full Text Available The Red Sea has a unique geography and ecosystem and its shores are very rich in mangrove, macro-algae and coral reefs. Different sources of pollution are affecting the Red Sea shores and waters which impacts biological life including microbial life. We assessed the effects of industrialization, along the Egyptian Red Sea coast in eight coastal sites and two lakes, on microbial life. The bacterial community in sediment samples was analyzed using bacterial 16S rDNApyrosequencing of V6-V4 hypervariable regions. Taxonomical assignment of 131,402 significant reads to major bacterial taxa revealed five main bacterial phyla dominating the sampled Red Sea sites. This includes Proteobacteria (68%, Firmicutes (13%, Fusobacteria (12%, Bacteriodetes (6% and Spirochetes (0.03%. Further analysis revealed distinct bacterial consortium formed mainly of: 1 marine Vibrio’s- suggesting a Marine Vibrio phenomenon 2 potential human pathogens and 3 oil-degrading bacteria. We discuss a distinct microbial consortium in Solar Lake West near Taba/Eilat and Saline Lake in Ras Muhammad; revealing the highest abundance of human pathogens versus no pathogens, respectively. Our results draw attention to the affects of industrialization on the Red Sea, and suggest further analysis to overcome hazardous affects on the impacted sites.

  18. Bayesian Statistical Analysis of Historical and Late Holocene Rates of Sea-Level Change

    Science.gov (United States)

    Cahill, Niamh; Parnell, Andrew; Kemp, Andrew; Horton, Benjamin

    2014-05-01

    A fundamental concern associated with climate change is the rate at which sea levels are rising. Studies of past sea level (particularly beyond the instrumental data range) allow modern sea-level rise to be placed in a more complete context. Considering this, we perform a Bayesian statistical analysis on historical and late Holocene rates of sea-level change. The data that form the input to the statistical model are tide-gauge measurements and proxy reconstructions from cores of coastal sediment. The aims are to estimate rates of sea-level rise, to determine when modern rates of sea-level rise began and to observe how these rates have been changing over time. Many of the current methods for doing this use simple linear regression to estimate rates. This is often inappropriate as it is too rigid and it can ignore uncertainties that arise as part of the data collection exercise. This can lead to over confidence in the sea-level trends being characterized. The proposed Bayesian model places a Gaussian process prior on the rate process (i.e. the process that determines how rates of sea-level are changing over time). The likelihood of the observed data is the integral of this process. When dealing with proxy reconstructions, this is set in an errors-in-variables framework so as to take account of age uncertainty. It is also necessary, in this case, for the model to account for glacio-isostatic adjustment, which introduces a covariance between individual age and sea-level observations. This method provides a flexible fit and it allows for the direct estimation of the rate process with full consideration of all sources of uncertainty. Analysis of tide-gauge datasets and proxy reconstructions in this way means that changing rates of sea level can be estimated more comprehensively and accurately than previously possible. The model captures the continuous and dynamic evolution of sea-level change and results show that not only are modern sea levels rising but that the rates

  19. Global analysis of anthropogenic debris ingestion by sea turtles.

    Science.gov (United States)

    Schuyler, Qamar; Hardesty, Britta Denise; Wilcox, Chris; Townsend, Kathy

    2014-02-01

    Ingestion of marine debris can have lethal and sublethal effects on sea turtles and other wildlife. Although researchers have reported on ingestion of anthropogenic debris by marine turtles and implied incidences of debris ingestion have increased over time, there has not been a global synthesis of the phenomenon since 1985. Thus, we analyzed 37 studies published from 1985 to 2012 that report on data collected from before 1900 through 2011. Specifically, we investigated whether ingestion prevalence has changed over time, what types of debris are most commonly ingested, the geographic distribution of debris ingestion by marine turtles relative to global debris distribution, and which species and life-history stages are most likely to ingest debris. The probability of green (Chelonia mydas) and leatherback turtles (Dermochelys coriacea) ingesting debris increased significantly over time, and plastic was the most commonly ingested debris. Turtles in nearly all regions studied ingest debris, but the probability of ingestion was not related to modeled debris densities. Furthermore, smaller, oceanic-stage turtles were more likely to ingest debris than coastal foragers, whereas carnivorous species were less likely to ingest debris than herbivores or gelatinovores. Our results indicate oceanic leatherback turtles and green turtles are at the greatest risk of both lethal and sublethal effects from ingested marine debris. To reduce this risk, anthropogenic debris must be managed at a global level. © 2013 The Authors. Conservation Biology published by Wiley Periodicals, Inc., on behalf of the Society for Conservation Biology.

  20. Risk analysis reveals global hotspots for marine debris ingestion by sea turtles

    NARCIS (Netherlands)

    Schuyler, Qamar A.; Wilcox, Chris; Townsend, Kathy A.; Wedemeyer-Strombel, Kathryn R.; Balazs, George; van Sebille, Erik|info:eu-repo/dai/nl/304831921; Hardesty, Britta Denise

    2016-01-01

    Plastic marine debris pollution is rapidly becoming one of the critical environmental concerns facing wildlife in the 21st century. Here we present a risk analysis for plastic ingestion by sea turtles on a global scale. We combined global marine plastic distributions based on ocean drifter data with

  1. Modelling and analysis of offshore energy systems on North Sea oil and gas platforms

    DEFF Research Database (Denmark)

    Nguyen, Tuong-Van; Elmegaard, Brian; Pierobon, Leonardo

    2012-01-01

    export, and power generation. In this paper, a generic model of a North Sea oil and gas platform is described and the most thermodynamically inefficient processes are identified by performing an exergy analysis. Models and simulations are built and run with the tools Aspen Plus R, DNA and Aspen HYSYS R...

  2. Risk Analysis Reveals Global Hotspots for Marine Debris Ingestion by Sea Turtles

    Science.gov (United States)

    Schuyler, Q. A.; Wilcox, C.; Townsend, K.; Wedemeyer-Strombel, K.; Balazs, G.; van Sebille, E.; Hardesty, B. D.

    2016-02-01

    Plastic marine debris pollution is rapidly becoming one of the critical environmental concerns facing wildlife in the 21st century. Here we present a risk analysis for plastic ingestion by sea turtles on a global scale. We combined global marine plastic distributions based on ocean drifter data with sea turtle habitat maps to predict exposure levels to plastic pollution. Empirical data from necropsies of deceased animals were then utilised to assess the consequence of exposure to plastics. We modelled the risk (probability of debris ingestion) by incorporating exposure to debris and consequence of exposure, and included life history stage, species of sea turtle, and date of stranding observation as possible additional explanatory factors. Life history stage is the best predictor of debris ingestion, but the best-fit model also incorporates encounter rates within a limited distance from stranding location, marine debris predictions specific to the date of the stranding study, and turtle species. There was no difference in ingestion rates between stranded turtles vs. those caught as bycatch from fishing activity, suggesting that stranded animals are not a biased representation of debris ingestion rates in the background population. Oceanic life-stage sea turtles are at the highest risk of debris ingestion, and olive ridley turtles are the most at-risk species. The regions of highest risk to global sea turtle populations are off of the east coasts of the USA, Australia, and South Africa; the east Indian Ocean, and Southeast Asia. Model results can be used to predict the number of sea turtles globally at risk of debris ingestion. Based on currently available data, initial calculations indicate that up to 52% of sea turtles may have ingested debris.

  3. Risk analysis reveals global hotspots for marine debris ingestion by sea turtles.

    Science.gov (United States)

    Schuyler, Qamar A; Wilcox, Chris; Townsend, Kathy A; Wedemeyer-Strombel, Kathryn R; Balazs, George; van Sebille, Erik; Hardesty, Britta Denise

    2016-02-01

    Plastic marine debris pollution is rapidly becoming one of the critical environmental concerns facing wildlife in the 21st century. Here we present a risk analysis for plastic ingestion by sea turtles on a global scale. We combined global marine plastic distributions based on ocean drifter data with sea turtle habitat maps to predict exposure levels to plastic pollution. Empirical data from necropsies of deceased animals were then utilised to assess the consequence of exposure to plastics. We modelled the risk (probability of debris ingestion) by incorporating exposure to debris and consequence of exposure, and included life history stage, species of sea turtle and date of stranding observation as possible additional explanatory factors. Life history stage is the best predictor of debris ingestion, but the best-fit model also incorporates encounter rates within a limited distance from stranding location, marine debris predictions specific to the date of the stranding study and turtle species. There is no difference in ingestion rates between stranded turtles vs. those caught as bycatch from fishing activity, suggesting that stranded animals are not a biased representation of debris ingestion rates in the background population. Oceanic life-stage sea turtles are at the highest risk of debris ingestion, and olive ridley turtles are the most at-risk species. The regions of highest risk to global sea turtle populations are off of the east coasts of the USA, Australia and South Africa; the east Indian Ocean, and Southeast Asia. Model results can be used to predict the number of sea turtles globally at risk of debris ingestion. Based on currently available data, initial calculations indicate that up to 52% of sea turtles may have ingested debris. © 2015 John Wiley & Sons Ltd.

  4. The Second SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-2)

    Science.gov (United States)

    2005-01-01

    Eight international laboratories specializing in the determination of marine pigment concentrations using high performance liquid chromatography (HPLC) were intercompared using in situ samples and a variety of laboratory standards. The field samples were collected primarily from eutrophic waters, although mesotrophic waters were also sampled to create a dynamic range in chlorophyll concentration spanning approximately two orders of magnitude (0.3 25.8 mg m-3). The intercomparisons were used to establish the following: a) the uncertainties in quantitating individual pigments and higher-order variables (sums, ratios, and indices); b) an evaluation of spectrophotometric versus HPLC uncertainties in the determination of total chlorophyll a; and c) the reduction in uncertainties as a result of applying quality assurance (QA) procedures associated with extraction, separation, injection, degradation, detection, calibration, and reporting (particularly limits of detection and quantitation). In addition, the remote sensing requirements for the in situ determination of total chlorophyll a were investigated to determine whether or not the average uncertainty for this measurement is being satisfied. The culmination of the activity was a validation of the round-robin methodology plus the development of the requirements for validating an individual HPLC method. The validation process includes the measurements required to initially demonstrate a pigment is validated, and the measurements that must be made during sample analysis to confirm a method remains validated. The so-called performance-based metrics developed here describe a set of thresholds for a variety of easily-measured parameters with a corresponding set of performance categories. The aggregate set of performance parameters and categories establish a) the overall performance capability of the method, and b) whether or not the capability is consistent with the required accuracy objectives.

  5. Radiochemical analysis of radio-nuclides in sea water collected near Bikini Atoll

    Energy Technology Data Exchange (ETDEWEB)

    Miyake, Y; Sugiura, Y

    1955-01-01

    A radiochemical analysis of sea water containing fission materials collected near Bikini Atoll in June, 1954, was performed. The sea water was boiled with hydrochloric acid, iron and lanthanum salts each 5 mg as Fe and La were added to it. They were precipitated as hydroxide, which was dissolved in hydrochloric acid and ferric chloride was extracted with ethyl ether. The remaining solution was evaporated to dryness and the residue was dissolved in hydrochloric acid. Using the latter solution the group separation was done with cation exchanger resins.

  6. SeaWiFS technical report series. Volume 11: Analysis of selected orbit propagation models for the SeaWiFS mission

    Science.gov (United States)

    Patt, Frederick S.; Hoisington, Charles M.; Gregg, Watson W.; Coronado, Patrick L.; Hooker, Stanford B. (Editor); Firestone, Elaine R. (Editor); Indest, A. W. (Editor)

    1993-01-01

    An analysis of orbit propagation models was performed by the Mission Operations element of the Sea-viewing Wide Field-of-View Sensor (SeaWiFS) Project, which has overall responsibility for the instrument scheduling. The orbit propagators selected for this analysis are widely available general perturbations models. The analysis includes both absolute accuracy determination and comparisons of different versions of the models. The results show that all of the models tested meet accuracy requirements for scheduling and data acquisition purposes. For internal Project use the SGP4 propagator, developed by the North American Air Defense (NORAD) Command, has been selected. This model includes atmospheric drag effects and, therefore, provides better accuracy. For High Resolution Picture Transmission (HRPT) ground stations, which have less stringent accuracy requirements, the publicly available Brouwer-Lyddane models are recommended. The SeaWiFS Project will make available portable source code for a version of this model developed by the Data Capture Facility (DCF).

  7. The major tectonic boundaries of the Northern Red Sea rift, Egypt derived from geophysical data analysis

    Science.gov (United States)

    Saleh, Salah; Pamukçu, Oya; Brimich, Ladislav

    2017-09-01

    In the present study, we have attempted to map the plate boundary between Arabia and Africa at the Northern Red Sea rift region including the Suez rift, Gulf of Aqaba-Dead Sea transform and southeastern Mediterranean region by using gravity data analysis. In the boundary analysis method which was used; low-pass filtered gravity anomalies of the Northern Red Sea rift region were computed. Different crustal types and thicknesses, sediment thicknesses and different heat flow anomalies were evaluated. According to the results, there are six subzones (crustal blocks) separated from each other by tectonic plate boundaries and/or lineaments. It seems that these tectonic boundaries reveal complex structural lineaments, which are mostly influenced by a predominant set of NNW-SSE to NW-SE trending lineaments bordering the Red Sea and Suez rift regions. On the other side, the E-W and N-S to NNE-SSW trended lineaments bordering the South-eastern Mediterranean, Northern Sinai and Aqaba-Dead Sea transform regions, respectively. The analysis of the low pass filtered Bouguer anomaly maps reveals that the positive regional anomaly over both the Red Sea rift and South-eastern Mediterranean basin subzones are considered to be caused by the high density of the oceanic crust and/or the anomalous upper mantle structures beneath these regions whereas, the broad medium anomalies along the western half of Central Sinai with the Suez rift and the Eastern Desert subzones are attributed to low-density sediments of the Suez rift and/or the thick upper continental crustal thickness below these zones. There are observable negative anomalies over the Northern Arabia subzone, particularly in the areas covered by Cenozoic volcanics. These negative anomalies may be attributed to both the low densities of the surface volcanics and/or to a very thick upper continental crust. On the contrary, the negative anomaly which belongs to the Gulf of Aqaba-Dead Sea transform zone is due to crustal thickening

  8. Comparative transcriptome analysis of papilla and skin in the sea cucumber, Apostichopus japonicus.

    Science.gov (United States)

    Zhou, Xiaoxu; Cui, Jun; Liu, Shikai; Kong, Derong; Sun, He; Gu, Chenlei; Wang, Hongdi; Qiu, Xuemei; Chang, Yaqing; Liu, Zhanjiang; Wang, Xiuli

    2016-01-01

    Papilla and skin are two important organs of the sea cucumber. Both tissues have ectodermic origin, but they are morphologically and functionally very different. In the present study, we performed comparative transcriptome analysis of the papilla and skin from the sea cucumber (Apostichopus japonicus) in order to identify and characterize gene expression profiles by using RNA-Seq technology. We generated 30.6 and 36.4 million clean reads from the papilla and skin and de novo assembled in 156,501 transcripts. The Gene Ontology (GO) analysis indicated that cell part, metabolic process and catalytic activity were the most abundant GO category in cell component, biological process and molecular funcation, respectively. Comparative transcriptome analysis between the papilla and skin allowed the identification of 1,059 differentially expressed genes, of which 739 genes were expressed at higher levels in papilla, while 320 were expressed at higher levels in skin. In addition, 236 differentially expressed unigenes were not annotated with any database, 160 of which were apparently expressed at higher levels in papilla, 76 were expressed at higher levels in skin. We identified a total of 288 papilla-specific genes, 171 skin-specific genes and 600 co-expressed genes. Also, 40 genes in papilla-specific were not annotated with any database, 2 in skin-specific. Development-related genes were also enriched, such as fibroblast growth factor, transforming growth factor-β, collagen-α2 and Integrin-α2, which may be related to the formation of the papilla and skin in sea cucumber. Further pathway analysis identified ten KEGG pathways that were differently enriched between the papilla and skin. The findings on expression profiles between two key organs of the sea cucumber should be valuable to reveal molecular mechanisms involved in the development of organs that are related but with morphological differences in the sea cucumber.

  9. Comparative transcriptome analysis of papilla and skin in the sea cucumber, Apostichopus japonicus

    Directory of Open Access Journals (Sweden)

    Xiaoxu Zhou

    2016-03-01

    Full Text Available Papilla and skin are two important organs of the sea cucumber. Both tissues have ectodermic origin, but they are morphologically and functionally very different. In the present study, we performed comparative transcriptome analysis of the papilla and skin from the sea cucumber (Apostichopus japonicus in order to identify and characterize gene expression profiles by using RNA-Seq technology. We generated 30.6 and 36.4 million clean reads from the papilla and skin and de novo assembled in 156,501 transcripts. The Gene Ontology (GO analysis indicated that cell part, metabolic process and catalytic activity were the most abundant GO category in cell component, biological process and molecular funcation, respectively. Comparative transcriptome analysis between the papilla and skin allowed the identification of 1,059 differentially expressed genes, of which 739 genes were expressed at higher levels in papilla, while 320 were expressed at higher levels in skin. In addition, 236 differentially expressed unigenes were not annotated with any database, 160 of which were apparently expressed at higher levels in papilla, 76 were expressed at higher levels in skin. We identified a total of 288 papilla-specific genes, 171 skin-specific genes and 600 co-expressed genes. Also, 40 genes in papilla-specific were not annotated with any database, 2 in skin-specific. Development-related genes were also enriched, such as fibroblast growth factor, transforming growth factor-β, collagen-α2 and Integrin-α2, which may be related to the formation of the papilla and skin in sea cucumber. Further pathway analysis identified ten KEGG pathways that were differently enriched between the papilla and skin. The findings on expression profiles between two key organs of the sea cucumber should be valuable to reveal molecular mechanisms involved in the development of organs that are related but with morphological differences in the sea cucumber.

  10. Exchanges between the shelf and the deep Black Sea: an integrated analysis of physical mechanisms

    Science.gov (United States)

    Shapiro, Georgy; Wobus, Fred; Zatsepin, Andrei; Akivis, Tatiana; Zhou, Feng

    2017-04-01

    This study provides an integrated analysis of exchanges of water, salt and heat between the north-western Black Sea shelf and the deep basin. Three contributing physical mechanisms are quantified, namely: Ekman drift, transport by mesoscale eddies at the edge of the NW Black Sea shelf and non-local cascading assisted by the rim current and mesoscale eddies. The semi-enclosed nature of the Black Sea together with its unique combination of an extensive shelf area in the North West and the deep central part make it sensitive to natural variations of fluxes, including the fluxes between the biologically productive shelf and predominantly anoxic deep sea. Exchanges between the shelf and deep sea play an important role in forming the balance of waters, nutrients and pollution within the coastal areas, and hence the level of human-induced eutrophication of coastal waters (MSFD Descriptor 5). In this study we analyse physical mechanisms and quantify shelf-deep sea exchange processes in the Black Sea sector using the NEMO ocean circulation model. The model is configured and optimized taking into account specific features of the Black Sea, and validated against in-situ and satellite observations. The study uses NEMO-BLS24 numerical model which is based on the NEMO codebase v3.2.1 with amendments introduced by the UK Met Office. The model has a horizontal resolution of 1/24×1/24° and a hybrid s-on-top-of-z vertical coordinate system with a total of 33 layers. The horizontal viscosity/diffusivity operator is rotated to reduce the contamination of vertical diffusion/viscosity by large values of their horizontal counterparts. The bathymetry is processed from ETOPO5 and capped to 1550m. Atmospheric forcing for the period 1989-2012 is given by the Drakkar Forcing Set v5.2. For comparison, the NCEP atmospheric forcing also used for 2005. The climatological runoff from 8 major rivers is included. We run the model individually for 24 calendar years without data assimilation. For

  11. Statistical analysis of temperature data sampled at Station-M in the Norwegian Sea

    Science.gov (United States)

    Lorentzen, Torbjørn

    2014-02-01

    The paper analyzes sea temperature data sampled at Station-M in the Norwegian Sea. The data cover the period 1948-2010. The following questions are addressed: What type of stochastic process characterizes the temperature series? Are there any changes or patterns which indicate climate change? Are there any characteristics in the data which can be linked to the shrinking sea-ice in the Arctic area? Can the series be modeled consistently and applied in forecasting of the future sea temperature? The paper applies the following methods: Augmented Dickey-Fuller tests for testing of unit-root and stationarity, ARIMA-models in univariate modeling, cointegration and error-correcting models are applied in estimating short- and long-term dynamics of non-stationary series, Granger-causality tests in analyzing the interaction pattern between the deep and upper layer temperatures, and simultaneous equation systems are applied in forecasting future temperature. The paper shows that temperature at 2000 m Granger-causes temperature at 150 m, and that the 2000 m series can represent an important information carrier of the long-term development of the sea temperature in the geographical area. Descriptive statistics shows that the temperature level has been on a positive trend since the beginning of the 1980s which is also measured in most of the oceans in the North Atlantic. The analysis shows that the temperature series are cointegrated which means they share the same long-term stochastic trend and they do not diverge too far from each other. The measured long-term temperature increase is one of the factors that can explain the shrinking summer sea-ice in the Arctic region. The analysis shows that there is a significant negative correlation between the shrinking sea ice and the sea temperature at Station-M. The paper shows that the temperature forecasts are conditioned on the properties of the stochastic processes, causality pattern between the variables and specification of model

  12. Global Analysis of Anthropogenic Debris Ingestion by Sea Turtles

    Science.gov (United States)

    Schuyler, Qamar; Hardesty, Britta Denise; Wilcox, Chris; Townsend, Kathy

    2014-01-01

    Ingestion of marine debris can have lethal and sublethal effects on sea turtles and other wildlife. Although researchers have reported on ingestion of anthropogenic debris by marine turtles and implied incidences of debris ingestion have increased over time, there has not been a global synthesis of the phenomenon since 1985. Thus, we analyzed 37 studies published from 1985 to 2012 that report on data collected from before 1900 through 2011. Specifically, we investigated whether ingestion prevalence has changed over time, what types of debris are most commonly ingested, the geographic distribution of debris ingestion by marine turtles relative to global debris distribution, and which species and life-history stages are most likely to ingest debris. The probability of green (Chelonia mydas) and leatherback turtles (Dermochelys coriacea) ingesting debris increased significantly over time, and plastic was the most commonly ingested debris. Turtles in nearly all regions studied ingest debris, but the probability of ingestion was not related to modeled debris densities. Furthermore, smaller, oceanic-stage turtles were more likely to ingest debris than coastal foragers, whereas carnivorous species were less likely to ingest debris than herbivores or gelatinovores. Our results indicate oceanic leatherback turtles and green turtles are at the greatest risk of both lethal and sublethal effects from ingested marine debris. To reduce this risk, anthropogenic debris must be managed at a global level. Análisis Global de la Ingesta de Residuos Antropogénicos por Tortugas Marinas La ingesta de residuos marinos puede tener efectos letales y subletales sobre las tortugas marinas y otros animales. Aunque hay investigadores que han reportado la ingesta de residuos antropogénicos por tortugas marinas y la incidencia de la ingesta de residuos ha incrementado con el tiempo, no ha habido una síntesis global del fenómeno desde 1985. Por esto analizamos 37 estudios publicados, desde

  13. Egypt's Red Sea coast: phylogenetic analysis of cultured microbial consortia in industrialized sites.

    Science.gov (United States)

    Mustafa, Ghada A; Abd-Elgawad, Amr; Abdel-Haleem, Alyaa M; Siam, Rania

    2014-01-01

    The Red Sea possesses a unique geography, and its shores are rich in mangrove, macro-algal and coral reef ecosystems. Various sources of pollution affect Red Sea biota, including microbial life. We assessed the effects of industrialization on microbes along the Egyptian Red Sea coast at eight coastal sites and two lakes. The bacterial communities of sediment samples were analyzed using bacterial 16S rDNA pyrosequencing of V6-V4 hypervariable regions. The taxonomic assignment of 131,402 significant reads to major bacterial taxa revealed five main bacterial phyla dominating the sampled sites: Proteobacteria (68%), Firmicutes (13%), Fusobacteria (12%), Bacteriodetes (6%), and Spirochetes (0.03%). Further analysis revealed distinct bacterial consortia that primarily included (1) marine Vibrio spp.-suggesting a "marine Vibrio phenomenon"; (2) potential human pathogens; and (3) oil-degrading bacteria. We discuss two divergent microbial consortia that were sampled from Solar Lake West near Taba/Eilat and Saline Lake in Ras Muhammad; these consortia contained the highest abundance of human pathogens and no pathogens, respectively. Our results draw attention to the effects of industrialization on the Red Sea and suggest the need for further analysis to overcome the hazardous effects observed at the impacted sites.

  14. Analysis of tidal currents in the North Sea from shipboard acoustic Doppler current profiler data

    Science.gov (United States)

    Vindenes, Håvard; Orvik, Kjell Arild; Søiland, Henrik; Wehde, Henning

    2018-06-01

    North Sea tidal currents are determined by applying harmonic analysis to ship-borne acoustic Doppler current profiler data recorded from 1999 to 2016, covering large areas of the northern North Sea. Direct current measurement data sets of this magnitude are rare in the otherwise well investigated North Sea, and thus it is a valuable asset in studying and expanding our understanding of its tidal currents and circulation in general. The harmonic analysis is applied to a least squares fit of the current observations at a set of knot points. Results from the harmonic analysis compare favorably to tidal parameters estimated from observations from moored instruments. The analysis shows that the tides are characterized by strong semi-diurnal component, with amplitudes of the principal Lunar constituent ranging from 1.6 cm/s in the Skagerrak to 67 cm/s in the Fair Isle Channel. Diurnal tides are found to be approximately one fifth the strength of the predominant semi-diurnal constituent. Output from a regional barotropic tide model compares well to tidal current determined from the harmonic analysis of the Acoustic Doppler Current Profiler data.

  15. SeaWiFS technical report series. Volume 26: Results of the SeaWiFS Data Analysis Round-Robin, July 1994 (DARR-1994)

    Science.gov (United States)

    Hooker, Stanford B. (Editor); Firestone, Elaine R. (Editor); Siegel, David A.; Obrien, Margaret C.; Sorensen, Jen C.; Konnoff, Daniel A.; Brody, Eric A.; Mueller, James L.; Davis, Curtiss O.; Rhea, W. Joseph

    1995-01-01

    The accurate determination of upper ocean apparent optical properties (AOP's) is essential for the vicarious calibration of the sea-viewing wide field-of-view sensor (SeaWiFS) instrument and the validation of the derived data products. To evaluate the role that data analysis methods have upon values of derived AOP's, the first Data Analysis Round-Robin (DARR-94) workshop was sponsored by the SeaWiFS Project during 21-23 July, 1994. The focus of this intercomparison study was the estimation of the downwelling irradiance spectrum just beneath the sea surface, E(sub d)(0(sup -), lambda); the upwelling nadir radiance just beneath the sea surface, L(sub u)(0(sup -), lambda); and the vertical profile of the diffuse attenuation coefficient spectrum, K(sub d)(z, lambda). In the results reported here, different methodologies from four research groups were applied to an identical set of 10 spectroradiometry casts in order to evaluate the degree to which data analysis methods influence AOP estimation, and whether any general improvements can be made. The overall results of DARR-94 are presented in Chapter 1 and the individual methods of the four groups are presented in Chapters 2-5. The DARR-94 results do not show a clear winner among data analysis methods evaluated. It is apparent, however, that some degree of outlier rejection is required in order to accurately estimate L(sub u)(0(sup -), lambda) or E(sub d)(0(sup -), lambda). Furthermore, the calculation, evaluation and exploitation of confidence intervals for the AOP determinations needs to be explored. That is, the SeaWiFS calibration and validation problem should be recast in statistical terms where the in situ AOP values are statistical estimates with known confidence intervals.

  16. Spectral analysis of underwater explosions in the Dead Sea

    Science.gov (United States)

    Gitterman, Y.; Ben-Avraham, Z.; Ginzburg, A.

    1998-08-01

    The present study utilizes the Israel Seismic Network (ISN) as a spatially distributed multichannel system for the discrimination of low-magnitude events (ML UWEs) and 16 earthquakes in the magnitude range ML = 1.6-2.8, within distances of 10-150 km, recorded by the ISN, were selected for the analysis. The analysis is based on a smoothed (0.5 Hz window) Fourier spectrum of the whole signal (defined by the signal-to-noise criterion), without picking separate wave phases. It was found that the classical discriminant of the seismic energy ratio between the relatively low-frequency (1-6 Hz) and high-frequency (6-11 Hz) bands, averaged over an ISN subnetwork, showed an overlap between UWEs and earthquakes and cannot itself provide reliable identification. We developed and tested a new multistation discriminant based on the low- frequency spectral modulation (LFSM) method. In our case the LFSM is associated with the bubbling effect in underwater explosions. The method demonstrates a distinct azimuth-invariant coherency of spectral shapes in the low-frequency range (1-12 Hz) of short-period seismometer systems. The coherency of the modulated spectra for different ISN stations was measured by semblance statistics commonly used in seismic prospecting for phase correlation in the time domain. The modified statistics provided an almost complete separation between earthquakes and underwater explosions.

  17. Taxonomic analysis of extremely halophilic archaea isolated from 56-years-old dead sea brine samples.

    Science.gov (United States)

    Arahal, D R; Gutiérrez, M C; Volcani, B E; Ventosa, A

    2000-10-01

    A taxonomic study comprising both phenotypic and genotypic characterization, has been carried out on a total of 158 extremely halophilic aerobic archaeal strains. These strains were isolated from enrichments prepared from Dead Sea water samples dating from 1936 that were collected by B. E. Volcani for the demonstration of microbial life in the Dead Sea. The isolates were examined for 126 morphological, physiological, biochemical and nutritional tests. Numerical analysis of the data, by using the S(J) coefficient and UPGMA clustering method, showed that the isolates clustered into six phenons. Twenty-two out of the 158 strains used in this study were characterized previously (ARAHAL et al., 1996) and were placed into five phenotypic groups. The genotypic study included both the determination of the guanineplus-cytosine content of the DNA and DNA-DNA hybridization studies. For this purpose, representative strains from the six phenons were chosen. These groups were found to represent some members of three different genera - Haloarcula (phenons A, B, and C), Haloferax (phenons D and E) and Halobacterium (phenon F) - of the family Halobacteriaceae, some of them never reported to occur in the Dead Sea, such as Haloarcula hispanica, while Haloferax volcanii (phenons D and E) was described in the Dead Sea by studies carried out several decades later than Volcani's work.

  18. Evaluating stress analysis and failure criteria for offshore structures for Pechora Sea conditions

    Science.gov (United States)

    Nesic, S.; Donskoy, Y.; Zolotukhin, A.

    2017-12-01

    Development of Arctic hydrocarbon resources has faced many challenges due to sensitive environmental conditions including low temperatures, ice cover and terrestrial permafrost and extreme seasonal variation in sunlight. Russian offshore field development in Arctic region is usually associated with annual ice cover, which can cause serious damage on the offshore platforms. The Pechora Sea has claimed as one of the most perspective oil and gas region of the Russian Arctic with seven discovered oil and gas fields and several dozens of structures. Our rough assessment, based on in-place hydrocarbon volumes and recovery factor evaluation concept, indicates that Pechora Sea alone has in-place volumes amounting to ca. 20 billion barrel oil equivalent (BOE). This quantity is enough to secure produced volumes by 2040 exceeding 3 billion BOE [1] that indicates huge resource potential of the region. The environmental conditions are primarily function of water dynamics and ice cover. The sea is covered by the ice for greatest part of the year. In this article, the ice load simulations were performed using explicit dynamic analysis system in ANSYS software to determine best shape and size of an offshore platform for the Pechora Sea ice conditions. Different gravity based structures (GBS) were analyzed: artificial island, hollow cylindrical and conical concrete structures and four-leg GBS. Relationships between the stress, deformations and time were analyzed and important observations from the simulation results were a basis for selecting the most preferable structures.

  19. Analysis of sea level data sequences in Colombian pacific ands its relationship to climate change

    International Nuclear Information System (INIS)

    Rangel, Ernesto Santiago; Montealegre; Jose Edgar

    2003-01-01

    By analyzing series of mean sea level (MSL), data for the towns of Tumaco (01 degrades N 78 degrades 44 minutes W, elevation: 0 meters) and Buenaventura (03 degrades 51 degrades N, 76 degrades 58 minutes W, elevation: 1 meter) the seasonal, intra-annual and inter-annual variability of the MSL are studied in the Colombian pacific, in connection with the el Nino-La Nina - southern oscillation (ENSO) cycle. The detection and the analysis of possible trends are examined in search of likely signal of global change in Colombia. This work concludes that the mean sea level (MSL) data for Tumaco and Buenaventura, are a good indicator, the first one, and a relatively acceptable indicator, the second, of the ENSO cycle, although of very low resolution during the La Nina episodes, in both cases. It was detected equally, a marked tendency for increasing of the mean sea level, approximately starting from the beginnings of the decade of the seventies, which could be related to the higher frequency of warm episodes. Although the longitude of the analyzed series doesn't allow arriving to conclusive results, the increasing tendency of the sea levels during the last twenty years could serve as an early warning in connection with possible manifestations of the global change in Colombia

  20. Analysis of sea water by difference chromatography. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Mangelsdorf, P.C. Jr.

    1977-02-01

    During the final period of this research contract the principal results obtained were: (a) the development of anion analysis by difference chromatography to the extent that SO/sub 4//sup =//Cl/sup -/ can be determined to better than 0.1 percent using an 0.5 ml seawater sample, (b) the determination of the ion-exchange cation complements of a variety of sediments in river water and in seawater, and (c) the discovery of a simple technique for the qualitative removal of NH/sub 4//sup +/ from seawater samples without altering the ratios of the other cations. This method supersedes the use of Cu-Chelex which has proved impossible to sustain.

  1. Genetic analysis of floating Enteromorpha prolifera in the Yellow Sea with AFLP marker

    Science.gov (United States)

    Liu, Cui; Zhang, Jing; Sun, Xiaoyu; Li, Jian; Zhang, Xi; Liu, Tao

    2011-09-01

    Extremely large accumulation of green algae Enteromorpha prolifera floated along China' coastal region of the Yellow Sea ever since the summer of 2008. Amplified Fragment Length Polymorphism (AFLP) analysis was applied to assess the genetic diversity and relationships among E. prolifera samples collected from 9 affected areas of the Yellow Sea. Two hundred reproducible fragments were generated with 8 AFLP primer combinations, of which 194 (97%) were polymorphic. The average Nei's genetic diversity, the coefficiency of genetic differentiation (Gst), and the average gene flow estimated from Gst in the 9 populations were 0.4018, 0.6404 and 0.2807 respectively. Cluster analysis based on the unweighed pair group method with arithmetic averages (UPGMA) showed that the genetic relationships within one population or among different populations were all related to their collecting locations and sampling time. Large genetic differentiation was detected among the populations. The E. prolifera originated from different areas and were undergoing a course of mixing.

  2. Multi-scale dynamical analysis (MSDA) of sea level records versus PDO, AMO, and NAO indexes

    OpenAIRE

    Scafetta, Nicola

    2013-01-01

    Herein I propose a multi-scale dynamical analysis to facilitate the physical interpretation of tide gauge records. The technique uses graphical diagrams. It is applied to six secular-long tide gauge records representative of the world oceans: Sydney, Pacific coast of Australia; Fremantle, Indian Ocean coast of Australia; New York City, Atlantic coast of USA; Honolulu, U.S. state of Hawaii; San Diego, U.S. state of California; and Venice, Mediterranean Sea, Italy. For comparison, an equivalent...

  3. PIXE analysis of otoliths from reared red sea bream, pagrus major (temminck et schlegl)

    International Nuclear Information System (INIS)

    Arai, Nobuaki; Sakamoto, Wataru

    1993-01-01

    PIXE analysis was applied to estimate mineral concentration in red sea bream otoliths without cutting or polishing. Detected elements include Sr, Fe, Mn and Zn, which are commonly found in the otoliths in marine fishes. Strontium-Calcium concentration ratio is calculated by means of combined X-ray yields. The ratio doesn't indicate clear correlaion with mean reared seawater temperature. It is caused by the diffraction error induced by rough topographies of the otoliths surface. (author)

  4. Study on the methods of rational analysis about the area of the Planning of Sea Usage of Regional Construction

    Science.gov (United States)

    Ya-Juan, Li; Tian-Yu, Mao; Mingjing-Tian

    2018-03-01

    The Planning of Sea Usage of Regional Construction is a new area, and the rational analysis about the area of which is one of its difficulties. Based on “Urban land classification and land use planning and construction standards”, the land use control index method study the rationality of the sea usage area of the whole region, by accumulating for specific land use indicators for each land type within the planning area. This paper, takeing the project named “caofeidian integrated service area” for example, make a little study on the land use control index method used by the sea usage demonstration of the planning of sea usage of regional construction. The study will be good for improving the technical methods of rational analysis about the area of the planning of sea usage of regional construction.

  5. Estimation of austral summer net community production in the Amundsen Sea: Self-organizing map analysis approach

    Science.gov (United States)

    Park, K.; Hahm, D.; Lee, D. G.; Rhee, T. S.; Kim, H. C.

    2014-12-01

    The Amundsen Sea, Antarctica, has been known for one of the most susceptible region to the current climate change such as sea ice melting and sea surface temperature change. In the Southern Ocean, a predominant amount of primary production is occurring in the continental shelf region. Phytoplankton blooms take place during the austral summer due to the limited sunlit and sea ice cover. Thus, quantifying the variation of summer season net community production (NCP) in the Amundsen Sea is essential to analyze the influence of climate change to the variation of biogeochemical cycle in the Southern Ocean. During the past three years of 2011, 2012 and 2014 in austral summer, we have conducted underway observations of ΔO2/Ar and derived NCP of the Amundsen Sea. Despite the importance of NCP for understanding biological carbon cycle of the ocean, the observations are rather limited to see the spatio-temporal variation in the Amundsen Sea. Therefore, we applied self-organizing map (SOM) analysis to expand our observed data sets and estimate the NCP during the summer season. SOM analysis, a type of artificial neural network, has been proved to be a useful method for extracting and classifying features in geoscience. In oceanography, SOM has applied for the analysis of various properties of the seawater such as sea surface temperature, chlorophyll concentration, pCO2, and NCP. Especially it is useful to expand a spatial coverage of direct measurements or to estimate properties whose satellite observations are technically or spatially limited. In this study, we estimate summer season NCP and find a variables set which optimally delineates the NCP variation in the Amundsen Sea as well. Moreover, we attempt to analyze the interannual variation of the Amundsen Sea NCP by taking climatological factors into account for the SOM analysis.

  6. Determination of rare earth elements in sea sediments from the Cuban northwestern coast by instrumental neutron activation analysis

    International Nuclear Information System (INIS)

    Capote Rodriguez, G.; Perez Zayas, G.; Pena Fortes, B.; Diaz Riso, O.; Hernandez Rivero, A.T.

    1998-01-01

    The multielemental characterization of sea sediments from an important Cuban coast was performed using instrumental Neutron activation analysis. The obtained results shown an impoverishment of in the studied zone, in comparison with the data taken from other Cuban coaster zones

  7. GHRSST Level 4 AVHRR_OI Global Blended Sea Surface Temperature Analysis (GDS version 2) from NCEI (GDS versions 1 and 2)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — A Group for High Resolution Sea Surface Temperature (GHRSST) global Level 4 sea surface temperature analysis produced daily on a 0.25 degree grid at the NOAA...

  8. GEOSTAR deep sea floor missions: magnetic data analysis and 1D geo electric structure underneath the Southern Tyrrhenian Sea

    International Nuclear Information System (INIS)

    Vitale, S.; De Santis, A.; Di Mauro, D.; Cafarella, L.; Palangio, P.; Beranzoli, L.; Favali, P.

    2009-01-01

    From 2000 to 2005 two geophysical exploration missions were undertaken in the Tyrrenian deep sea floor at depth between -2000 and -3000 m in the framework of the European-funded GEOSTAR Projects. The considered missions in this work are GEOSTAR-2 and ORION-GEOSTAR-3 with the main scientific objective of investigating the deep-sea floor by means of an automatic multiparameter benthic observatory station working continuously from around 5 to 12 months each time. During the two GEOSTAR deep sea floor missions, scalar and vector magnetometers acquired useful magnetic data both to improve global and regional geomagnetic reference models and to infer specific geo electric information about the two sites of magnetic measurements by means of a forward modelling.

  9. A 35-year hindcast for the Baltic Sea (1980-2014) - a statistical analysis

    Science.gov (United States)

    Gräwe, Ulf; Holtermann, Peter

    2015-04-01

    The Baltic Sea is a semi-enclosed sea with limited water exchange. The most important process that leads to deep water renewal of the Baltic Sea are inflows of dense, saline North Sea water. These water masses have to pass narrow channels and sills in the Danish Straits and three basins with increasing depth. Along this path, the inflowing gravity currents are subject to entrainment, vertical and horizontal mixing. Thus, physical and numerical mixing are crucial for the proper propagation of these inflows. Additionally, a permanent halocline and a summer thermocline are challenging for state of the art ocean models. Moreover, Holtermann et al (2014) could show, that boundary mixing in the deep basins dominates the vertical mixing of tracers. To tackle these challenges, we used the General Estuarine Transport Model (GETM) to give a state estimate for the Baltic Sea for the period 1980-2014. The setup has a horizontal resolution of 1 nm. In the vertical, terain following coordinates are used. A special feature of GETM is that it can run with vertical adaptive coordinates. Here we use an adaptation towards stratification. The minimum layer thickness is limited to 30 cm. We also include the effects of wind waves (by radiation stresses, and changes in the bottom stresses) into our simulations. The atmospheric forcing is taken from the global reanalysis of the NCEP-CFSR (Saha et al 2011) with a spatial resolution of 30 km and hourly values. The model validation at selected stations in the Baltic Sea shows an average Bias of ±0.15 psu and a RMSE of 0.4 psu. These values are similar to the data assimilation runs of Fu et al (2011) or Liu et al (2013). However, one has to note that our simulations are free runs without any nudging or data assimilation. Driven by the good performance of the model, we use the model output to provide a state estimate of the actual climate period (1980-2010). The analysis includes a quantification and estimation of: surge levels with a 30-year

  10. Compositional analysis of sulfated polysaccharides from sea cucumber (Stichopus japonicus) released by autolysis reaction.

    Science.gov (United States)

    Song, Shuang; Wu, Sufeng; Ai, Chunqing; Xu, Xin; Zhu, Zhenjun; Cao, Chunyang; Yang, Jingfeng; Wen, Chengrong

    2018-07-15

    Autolysis is not only a major reason for postharvest quality deterioration of sea cucumber, but also a promising alternative for exogenous protease to produce peptides or polysaccharides. However, little has been known about the effects of autolysis on bioactive polysaccharides of sea cucumber. Concerning the quality and safety of sea cucumber products involved autolysis reaction, the present study focused on the chemical composition of sulfated polysaccharides (SPs) released by autolysis reaction. Chemical analysis indicated that after 3-day autolysis 63% of sulfated polysaccharides were liberated but with protein chains at their reducing ends. Then the composition of SP obtained by autolysis (A-SP) was compared with that of total SPs (T-SP) via a series of analysis techniques, including FTIR, 1 H NMR, HPLC and mass spectroscopy. As indicated by the results, fucan to fucosylated chondroitin sulfate ratio was found high in A-SP compared to T-SP, fucan with a lower molecular weight was the major fraction in A-SP, and the di-sulfated Fuc residue observed in T-SP was absent in A-SP. To conclude, A-SP differed greatly from T-SP in the chemical composition, suggesting possible changes on their bioactivities. Copyright © 2018. Published by Elsevier B.V.

  11. Transcriptome analysis of the sea cucumber (Apostichopus japonicus) with variation in individual growth.

    Science.gov (United States)

    Gao, Lei; He, Chongbo; Bao, Xiangbo; Tian, Meilin; Ma, Zhen

    2017-01-01

    The sea cucumber (Apostichopus japonicus) is an economically important aquaculture species in China. However, the serious individual growth variation often caused financial losses to farmers and the genetic mechanisms are poorly understood. In the present study, the extensively analysis at the transcriptome level for individual growth variation in sea cucumber was carried out. A total of 118946 unigenes were assembled from 255861 transcripts, with N50 of 1700. Of all unigenes, about 23% were identified with at least one significant match to known databases. In all four pair of comparison, 1840 genes were found to be expressed differently. Global hypometabolism was found to be occurred in the slow growing population, based on which the hypothesis was raised that growth retardation in individual growth variation of sea cucumber is one type of dormancy which is used to be against to adverse circumstances. Besides, the pathways such as ECM-receptor interaction and focal adhesion were enriched in the maintenance of cell and tissue structure and communication. Further, 76645 SSRs, 765242 SNPs and 146886 ins-dels were detected in the current study providing an extensive set of data for future studies of genetic mapping and selective breeding. In summary, these results will provides deep insight into the molecular basis of individual growth variation in marine invertebrates, and be valuable for understanding the physiological differences of growth process.

  12. Structural analysis and anticoagulant activities of two sulfated polysaccharides from the sea cucumber Holothuria coluber.

    Science.gov (United States)

    Yang, Wenjiao; Cai, Ying; Yin, Ronghua; Lin, Lisha; Li, Zhongkun; Wu, Mingyi; Zhao, Jinhua

    2018-05-01

    Sulfated polysaccharides such as fucosylated glycosaminoglycan and fucan sulfate from echinoderm possess complex chemical structure and various biological activities. The two sulfated polysaccharides were purified from the low-value sea cucumber Holothuria coluber. Their physicochemical properties and chemical structures were analyzed and characterized by chemical and instrumental methods. Structural analysis clarified that the sea cucumber fucosylated glycosaminoglycan contains a chondroitin sulfate-like backbone and fucosyl branches with four various sulfation patterns. The fucan sulfate with molecular weight of 64.6 kDa comprises a central core of regular α(1 → 4)-linked tetrasaccharide repeating units, each of which is linked by a 4-O-sulfated fucose residue. Anticoagulant assays indicated that these sulfated polysaccharides possessed strong APTT prolonging activities and intrinsic factor Xase inhibitory activities, both of which decreased with the reduction of their molecular weights. Our results expand knowledge on the structural types of sulfated polysaccharides from sea cucumbers and further illustrate their functionality. Copyright © 2018. Published by Elsevier B.V.

  13. Transcriptome analysis of the sea cucumber (Apostichopus japonicus with variation in individual growth.

    Directory of Open Access Journals (Sweden)

    Lei Gao

    Full Text Available The sea cucumber (Apostichopus japonicus is an economically important aquaculture species in China. However, the serious individual growth variation often caused financial losses to farmers and the genetic mechanisms are poorly understood. In the present study, the extensively analysis at the transcriptome level for individual growth variation in sea cucumber was carried out. A total of 118946 unigenes were assembled from 255861 transcripts, with N50 of 1700. Of all unigenes, about 23% were identified with at least one significant match to known databases. In all four pair of comparison, 1840 genes were found to be expressed differently. Global hypometabolism was found to be occurred in the slow growing population, based on which the hypothesis was raised that growth retardation in individual growth variation of sea cucumber is one type of dormancy which is used to be against to adverse circumstances. Besides, the pathways such as ECM-receptor interaction and focal adhesion were enriched in the maintenance of cell and tissue structure and communication. Further, 76645 SSRs, 765242 SNPs and 146886 ins-dels were detected in the current study providing an extensive set of data for future studies of genetic mapping and selective breeding. In summary, these results will provides deep insight into the molecular basis of individual growth variation in marine invertebrates, and be valuable for understanding the physiological differences of growth process.

  14. Sensitivity Analysis of Arctic Sea Ice Extent Trends and Statistical Projections Using Satellite Data

    Directory of Open Access Journals (Sweden)

    Ge Peng

    2018-02-01

    Full Text Available An ice-free Arctic summer would have pronounced impacts on global climate, coastal habitats, national security, and the shipping industry. Rapid and accelerated Arctic sea ice loss has placed the reality of an ice-free Arctic summer even closer to the present day. Accurate projection of the first Arctic ice-free summer year is extremely important for business planning and climate change mitigation, but the projection can be affected by many factors. Using an inter-calibrated satellite sea ice product, this article examines the sensitivity of decadal trends of Arctic sea ice extent and statistical projections of the first occurrence of an ice-free Arctic summer. The projection based on the linear trend of the last 20 years of data places the first Arctic ice-free summer year at 2036, 12 years earlier compared to that of the trend over the last 30 years. The results from a sensitivity analysis of six commonly used curve-fitting models show that the projected timings of the first Arctic ice-free summer year tend to be earlier for exponential, Gompertz, quadratic, and linear with lag fittings, and later for linear and log fittings. Projections of the first Arctic ice-free summer year by all six statistical models appear to converge to the 2037 ± 6 timeframe, with a spread of 17 years, and the earliest first ice-free Arctic summer year at 2031.

  15. Forecasting Antarctic Sea Ice Concentrations Using Results of Temporal Mixture Analysis

    Science.gov (United States)

    Chi, Junhwa; Kim, Hyun-Cheol

    2016-06-01

    Sea ice concentration (SIC) data acquired by passive microwave sensors at daily temporal frequencies over extended areas provide seasonal characteristics of sea ice dynamics and play a key role as an indicator of global climate trends; however, it is typically challenging to study long-term time series. Of the various advanced remote sensing techniques that address this issue, temporal mixture analysis (TMA) methods are often used to investigate the temporal characteristics of environmental factors, including SICs in the case of the present study. This study aims to forecast daily SICs for one year using a combination of TMA and time series modeling in two stages. First, we identify temporally meaningful sea ice signatures, referred to as temporal endmembers, using machine learning algorithms, and then we decompose each pixel into a linear combination of temporal endmembers. Using these corresponding fractional abundances of endmembers, we apply a autoregressive model that generally fits all Antarctic SIC data for 1979 to 2013 to forecast SIC values for 2014. We compare our results using the proposed approach based on daily SIC data reconstructed from real fractional abundances derived from a pixel unmixing method and temporal endmember signatures. The proposed method successfully forecasts new fractional abundance values, and the resulting images are qualitatively and quantitatively similar to the reference data.

  16. Simulation and analysis of the mesoscale circulation in the northwestern Mediterranean Sea

    Directory of Open Access Journals (Sweden)

    V. Echevin

    Full Text Available The large-scale and mesoscale circulation of the northwestern Mediterranean Sea are simulated with an eddy-resolving primitive-equation regional model (RM of 1/16° resolution embedded in a general circulation model (GM of the Mediterranean Sea of 1/8° resolution. The RM is forced by a monthly climatology of heat fluxes, precipitation and wind stress. The GM, which uses the same atmospheric forcing, provides initial and boundary conditions for the RM. Analysis of the RM results shows that several realistic features of the large-scale and mesoscale circulation are evident in this region. The mean cyclonic circulation is in good agreement with observations. Mesoscale variability is intense along the coasts of Sardinia and Corsica, in the Gulf of Lions and in the Catalan Sea. The length scales of the Northern Current meanders along the Provence coast and in the Gulf of Lions’ shelf are in good agreement with observations. Winter Intermediate Water is formed along most of the north-coast shelves, between the Gulf of Genoa and Cape Creus. Advection of this water by the mean cyclonic circulation generates a complex eddy field in the Catalan Sea. Intense anticyclonic eddies are generated northeast of the Balearic Islands. These results are in good agreement with mesoscale activity inferred from satellite altimetric data. This work demonstrates the feasibility of a down-scaling system composed of a general-circulation, a regional and a coastal model, which is one of the goals of the Mediterranean Forecasting System Pilot Project.

    Key words. Oceanography: physical (currents; eddies and mesoscale processes; general circulation

  17. ATSR sea surface temperature data in a global analysis with TOPEX/POSEIDON altimetry

    DEFF Research Database (Denmark)

    Knudsen, Per; Andersen, Ole Baltazar; Knudsen, Thomas

    1996-01-01

    Along Track Scanning Radiometer (ATSR) data from the ERS 1 satellite mission are used in a global analysis of the surface temperature of the oceans. The data are the low resolution 0.5 degrees by 0.5 degrees average temperatures and cover about 24 months. At global scales a significant seasonal...... variability is found. On each of the hemispheres the surface temperatures reach their maximum after summer heating. The seasonal sea level variability, as observed from TOPEX/POSEIDON, reaches its maximum 1.1-1.4 months later....

  18. DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea)

    OpenAIRE

    Berry, Tina E.; Osterrieder, Sylvia K.; Murray, D?ith? C.; Coghlan, Megan L.; Richardson, Anthony J.; Grealy, Alicia K.; Stat, Michael; Bejder, Lars; Bunce, Michael

    2017-01-01

    Abstract The analysis of apex predator diet has the ability to deliver valuable insights into ecosystem health, and the potential impacts a predator might have on commercially relevant species. The Australian sea lion (Neophoca cinerea) is an endemic apex predator and one of the world's most endangered pinnipeds. Given that prey availability is vital to the survival of top predators, this study set out to understand what dietary information DNA metabarcoding could yield from 36 sea lion scats...

  19. Sound speed in the Mediterranean Sea: an analysis from a climatological data set

    Directory of Open Access Journals (Sweden)

    S. Salon

    2003-03-01

    Full Text Available This paper presents an analysis of sound speed distribution in the Mediterranean Sea based on climatological temperature and salinity data. In the upper layers, propagation is characterised by upward refraction in winter and an acoustic channel in summer. The seasonal cycle of the Mediterranean and the presence of gyres and fronts create a wide range of spatial and temporal variabilities, with relevant differences between the western and eastern basins. It is shown that the analysis of a climatological data set can help in defining regions suitable for successful monitoring by means of acoustic tomography. Empirical Orthogonal Functions (EOF decomposition on the profiles, performed on the seasonal cycle for some selected areas, demonstrates that two modes account for more than 98% of the variability of the climatological distribution. Reduced order EOF analysis is able to correctly represent sound speed profiles within each zone, thus providing the a priori knowledge for Matched Field Tomography. It is also demonstrated that salinity can affect the tomographic inversion, creating a higher degree of complexity than in the open oceans.Key words. Oceanography: general (marginal and semi-enclosed seas; ocean acoustics

  20. Rhodopsin in the Dark Hot Sea: Molecular Analysis of Rhodopsin in a Snailfish, Careproctus rhodomelas, Living near the Deep-Sea Hydrothermal Vent.

    Directory of Open Access Journals (Sweden)

    Rie Sakata

    Full Text Available Visual systems in deep-sea fishes have been previously studied from a photobiological aspect; however, those of deep-sea fish inhabiting the hydrothermal vents are far less understood due to sampling difficulties. In this study, we analyzed the visual pigment of a deep-sea snailfish, Careproctus rhodomelas, discovered and collected only near the hydrothermal vents of oceans around Japan. Proteins were solubilized from the C. rhodomelas eyeball and subjected to spectroscopic analysis, which revealed the presence of a pigment characterized by an absorption maximum (λmax at 480 nm. Immunoblot analysis of the ocular protein showed a rhodopsin-like immunoreactivity. We also isolated a retinal cDNA encoding the entire coding sequence of putative C. rhodomelas rhodopsin (CrRh. HEK293EBNA cells were transfected with the CrRh cDNA and the proteins extracted from the cells were subjected to spectroscopic analysis. The recombinant CrRh showed the absorption maximum at 480 nm in the presence of 11-cis retinal. Comparison of the results from the eyeball extract and the recombinant CrRh strongly suggests that CrRh has an A1-based 11-cis-retinal chromophore and works as a photoreceptor in the C. rhodomelas retina, and hence that C. rhodomelas responds to dim blue light much the same as other deep-sea fishes. Because hydrothermal vent is a huge supply of viable food, C. rhodomelas likely do not need to participate diel vertical migration and may recognize the bioluminescence produced by aquatic animals living near the hydrothermal vents.

  1. Tsunami Hazard Analysis for the Eastern Mediterranean and its Connected Seas

    Science.gov (United States)

    Necmioglu, Ocal; Meral Ozel, Nurcan

    2015-04-01

    Accurate earthquake source parameters are essential for any tsunami hazard assessment and mitigation, including early warning systems. Complex tectonic setting makes the a priori accurate assumptions of earthquake source parameters difficult and characterization of the faulting type is a challenge. Information on tsunamigenic sources is of crucial importance in the Eastern Mediterranean and its Connected Seas, especially considering the short arrival times and lack of offshore sea-level measurements. In addition, the scientific community have had to abandon the paradigm of a ''maximum earthquake'' predictable from simple tectonic parameters (Ruff and Kanamori, 1980) in the wake of the 2004 Sumatra event (Okal, 2010) and one of the lessons learnt from the 2011 Tohoku event was that tsunami hazard maps may need to be prepared for infrequent gigantic earthquakes as well as more frequent smaller-sized earthquakes (Satake, 2011). We have initiated an extensive modeling study to perform a deterministic Tsunami Hazard Analysis for the Eastern Mediterranean and its Connected Seas. Characteristic earthquake source parameters (strike, dip, rake, depth, Mwmax) at each 0.5° x 0.5° size bin for 0-40 km depth (total of 310 bins) and for 40-100 km depth (total of 92 bins) in the Eastern Mediterranean, Aegean and Black Sea region (30°N-48°N and 22°E-44°E) have been assigned from the harmonization of the available databases and previous studies. These parameters have been used as input parameters for the deterministic tsunami hazard modeling. Nested Tsunami simulations of 6h duration with a coarse (2 arc-min) grid resolution have been simulated at EC-JRC premises for Black Sea and Eastern and Central Mediterranean (30°N-41.5°N and 8°E-37°E) for each source defined using shallow water finite-difference SWAN code (Mader, 2004) for the magnitude range of 6.5 - Mwmax defined for that bin with a Mw increment of 0.1. Results show that not only the earthquakes resembling the

  2. Deterministic Tectonic Origin Tsunami Hazard Analysis for the Eastern Mediterranean and its Connected Seas

    Science.gov (United States)

    Necmioglu, O.; Meral Ozel, N.

    2014-12-01

    Accurate earthquake source parameters are essential for any tsunami hazard assessment and mitigation, including early warning systems. Complex tectonic setting makes the a priori accurate assumptions of earthquake source parameters difficult and characterization of the faulting type is a challenge. Information on tsunamigenic sources is of crucial importance in the Eastern Mediterranean and its Connected Seas, especially considering the short arrival times and lack of offshore sea-level measurements. In addition, the scientific community have had to abandon the paradigm of a ''maximum earthquake'' predictable from simple tectonic parameters (Ruff and Kanamori, 1980) in the wake of the 2004 Sumatra event (Okal, 2010) and one of the lessons learnt from the 2011 Tohoku event was that tsunami hazard maps may need to be prepared for infrequent gigantic earthquakes as well as more frequent smaller-sized earthquakes (Satake, 2011). We have initiated an extensive modeling study to perform a deterministic Tsunami Hazard Analysis for the Eastern Mediterranean and its Connected Seas. Characteristic earthquake source parameters (strike, dip, rake, depth, Mwmax) at each 0.5° x 0.5° size bin for 0-40 km depth (total of 310 bins) and for 40-100 km depth (total of 92 bins) in the Eastern Mediterranean, Aegean and Black Sea region (30°N-48°N and 22°E-44°E) have been assigned from the harmonization of the available databases and previous studies. These parameters have been used as input parameters for the deterministic tsunami hazard modeling. Nested Tsunami simulations of 6h duration with a coarse (2 arc-min) and medium (1 arc-min) grid resolution have been simulated at EC-JRC premises for Black Sea and Eastern and Central Mediterranean (30°N-41.5°N and 8°E-37°E) for each source defined using shallow water finite-difference SWAN code (Mader, 2004) for the magnitude range of 6.5 - Mwmax defined for that bin with a Mw increment of 0.1. Results show that not only the

  3. Modeling and Analysis of Sea-level Rise Impacts on Salinity in the Lower St. Johns River

    Science.gov (United States)

    Bacopoulos, P.

    2015-12-01

    There is deliberate attention being paid to studying sea-level rise impacts on the lower St. Johns River, a drowned coastal plain-type estuary with low topographic drive, located in northeastern Florida. One area of attention is salinity in the river, which influences the entire food web, including sea and marsh grasses, juvenile crustaceans and fishes, wading birds and migratory waterfowl, marine mammals and other predator animals. It is expected that elevated ocean levels will increase the salinity of the estuarine waters, leading to deleterious effects on dependent species of the river biology. The objective of the modeling and analysis was: 1) to establish baseline conditions of salinity for the lower St. Johns River; and 2) to examine future conditions of salinity, as impacted by sea-level rise. Establishing baseline conditions entailed validation of the model for present-day salinity in the lower St. Johns River via comparison to available data. Examining future conditions entailed application of the model for sea-level rise scenarios, with comparison to the baseline conditions, for evaluation of sea-level rise impacts on salinity. While the central focus was on the physics of sea-level rise impacts on salinity, some level of salinity-biological assessment was conducted to identify sea-level rise/salinity thresholds, as related to negatively impacting different species of the river biology.

  4. Siderophile element concentrations in magnetic spherules from deep sea sediments revealed by instrumental neutron activation analysis

    International Nuclear Information System (INIS)

    Nogami, Ken-ichi; Shimamura, Tadashi; Tazawa, Yuji; Yamakoshi, Kazuo.

    1980-01-01

    For the purpose of deciding the extraterrestrial origin of the magnetic spherules found in deep sea sediments, the siderophile elements Co, Ni, Ir and/or Au etc., were measured by instrumental neutron activation analysis. Spherules were collected from red clay samples which were dredged from Mid Pacific Ocean. Only spherules which had smooth surfaces and relatively high specific gravities were chosen for analysis. Existence of Co, Ni and Ir in most spherules suggests the possibility of an extraterrestrial origin for these spherules. It is not clear whether these spherules are droplets ablated from iron meteorites entering into the Earth's atmosphere or they are cosmic iron grains themselves. X-ray diffraction analysis suggested that these spherules are the products of rapid cooling materials. (author)

  5. Comparative Transcriptome Analysis Reveals Growth-Related Genes in Juvenile Chinese Sea Cucumber, Russian Sea Cucumber, and Their Hybrids.

    Science.gov (United States)

    Wang, Zhicheng; Cui, Jun; Song, Jian; Wang, Haoze; Gao, Kailun; Qiu, Xuemei; Gou, Meng; Li, Xin; Hu, Ziwen; Wang, Xiuli; Chang, Yaqing

    2018-04-01

    Heterosis is important for sea cucumber breeding, but its molecular mechanism remains largely unexplored. In this study, parental lines of Apostichopus japonicus from Russia (R) and China (C) were used to construct hybrids (CR and RC) by reciprocal crossing. We examined the transcriptional profiles of the hybrids (CR and RC) and the purebreds (CC and RR) at different developmental times. A total of 60.27 Gb of clean data was obtained, and 176,649 unigenes were identified, of which 50,312 unigenes were annotated. A total of 414,536 SNPs were identified. A total of 7011 differentially expressed genes (DEGs) were obtained between the purebreds and hybrids at 45 days after fertilization (DAF), and a total of 8218 DEGs were obtained between the purebreds and hybrids at 75 DAF. In addition, a total of 7652 DEGs were obtained between 45 DAF and 75 DAF. The significant DEGs were mainly involved in the MAPK and FOXO signaling pathways, especially in the Ras-Raf-MEK1/2-ERK module, which may be a key regulator of development and growth in juvenile A. japonicus. In addition, we also identified key growth-related genes, such as fgfs, igfs, megfs and hgfs, which were upregulated in the hybrids (RC and CR); these genes may play important roles in heterosis in A. japonicus. Our study provides fundamental information on the molecular mechanisms underlying heterosis in sea cucumber and might suggest strategies for the selection of rapidly growing strains of sea cucumber in aquaculture.

  6. Assessment of genetic diversity using RAPD analysis in a germplasm collection of sea buckthorn

    Directory of Open Access Journals (Sweden)

    G.I. BARTISH

    2008-12-01

    Full Text Available Random amplified polymorphic DNA (RAPD markers were used to characterize a part of a sea buckthorn gene bank collected for plant breeding purposes. Molecular markers were generated in 55 cultivars and accessions, representing five subspecies of Hippophae rhamnoides L. and intraspecific hybrids between different subspecies. Sixty-three markers were used to generate a Dice's similarity coefficient matrix of pairwise comparisons between individual RAPD profiles. Cluster (UPGMA and principal co-ordinate analyses, based on this matrix, revealed clustering of plants into groups which generally correspond to their taxonomic classification or geographic origin. The analysis of molecular variance (AMOVA was found useful for estimating components of genetic variation between and within taxonomic and geographic groups of accessions and cultivars. Whereas both alternatives for grouping the material (taxonomic or geographic origin resulted in significant between-group variation, the major part of molecular variance (approximately 75% was still attributed to variation within groups. We conclude that the RAPD analysis is useful for clarification of taxonomic and geographic origin of accessions and cultivars of sea buckthorn.

  7. Analysis of lanthanides and actinides in sea sediments from the Gulf of Tehuantepec

    International Nuclear Information System (INIS)

    Eduardo Ordonez-Regil; Genoveva Garcia-Rosales; Omar Eduardo Gutierrez-Muniz

    2011-01-01

    Seawater contains trace elements in solution, such as lanthanides and uranium, which can act as natural tracers when they flocculate to form the sediments of the seabed. Uranium is a special case because it is a radioactive element with isotopic ratio close to 1.14 ( 234 U/ 238 U) in sea water. Uranium is also present in all fractions of sediments, although the isotopic ratio in each fraction takes a specific value depending on its origin and surrounding environment. This work has been conducted in order to analyze lanthanides and uranium in a core of sea sediments. It is focused on separating the fractions forming the layers along the depth profile of the core sample so as to determine the 234 U/ 238 U activity ratios in fractions of organic matter, aquatic life skeletons and dissolved minerals. The Neutron Activation Analysis showed the presence of U, Lu, Hf, Eu, Ce and Yb ranging up to 50 ppm while alpha spectrometry gave a series of 234 U/ 238 U activity ratios which are discussed on the basis of statistical analysis. (author)

  8. SYSTEMATIC ANALYSIS OF PERSPECTIVE TRENDS IN ECOLOGICAL AND BIOLOGICAL STUDIES OF THE CASPIAN SEA

    Directory of Open Access Journals (Sweden)

    G. M. Abdurakhmanov

    2016-01-01

    Full Text Available RETRACTED ARTICLEAim. The main purpose of the ecological and biological research (EBR of the Caspian Sea is the information and technical support of decision-making to ensure the environmental management in the region taking into account the increase of anthropogenic impact and change in climatic conditions.Methods. As a basis, we have adopted the method of theoretical and mathematical generalization of a number of scientific papers and systematic analysis of the proposed solutions.Results. Analysis and mathematical processing of published literature sources has convincingly demonstrated the need for international cooperation to optimize the ecological and biological research. It has also confirmed the usefulness of the ecological and biological studies of the Caspian Sea in different directions, and the distribution of effort (cost between them requires coordinated management.Conclusion. It is shown that the data obtained by EBI have both rapid and long-term value. In the future, it is rational to develop suitable approaches to unified structuring of the EBR data, including their spatial and timing. An important task is to create a single interstate information space on the results of EBR using information and communication technologies.

  9. A dynamically consistent analysis of circulation and transports in the southwestern Weddell Sea

    Directory of Open Access Journals (Sweden)

    M. Yaremchuk

    Full Text Available An inverse model is applied for the analysis of hydrographic and current meter data collected on the repeat WOCE section SR4 in the Weddell Sea in 1989–1992. The section crosses the Weddell Sea cyclonic gyre from Kapp Norvegia to the northern end of the Antarctic Peninsula. The concepts of geostrophy, conservation of planetary vorticity and hydrostatics are combined with advective balances of active and passive properties to provide a dynamically consistent circulation pattern. Our variational assimilation scheme allows the calculation of three-dimensional velocities in the section plane. Current speeds are small except along the coasts where they reach up to 12 cm/s. We diagnose a gyre transport of 34 Sverdrup which is associated with a poleward heat transport of 28×1012 W corresponding to an average heat flux of 15 Wm–2 in the Weddell Sea south of the transect. This exceeds the estimated local flux on the transect of 2 Wm–2. As the transect is located mostly in the open ocean, we conclude that the shelf areas contribute significantly to the ocean-atmosphere exchange and are consequently key areas for the contribution of the Weddell Sea to global ocean ventilation. Conversion of water masses occuring south of the section transform 6.6±1.1 Sv of the inflowing warm deep water into approximately equal amounts of Weddell Sea deep water and Weddell Sea bottom water. The volume transport of surface water equals in the in- and outflow. This means that almost all newly formed surface water is involved in the deep and bottom water formation. Comparison with the results obtained by pure velocity interpolation combined with a hydrographic data subset indicates major differences in the derived salt transports and the water mass conversion of the surface water. The differences can be explained by deviations in the structure of the upper ocean currents to which shelf areas contribute significantly. Additionally a

  10. Comparative transcriptome analysis of three color variants of the sea cucumber Apostichopus japonicus.

    Science.gov (United States)

    Jo, Jihoon; Park, Jongsun; Lee, Hyun-Gwan; Kern, Elizabeth M A; Cheon, Seongmin; Jin, Soyeong; Park, Joong-Ki; Cho, Sung-Jin; Park, Chungoo

    2016-08-01

    The sea cucumber Apostichopus japonicus Selenka 1867 represents an important resource in biomedical research, traditional medicine, and the seafood industry. Much of the commercial value of A. japonicus is determined by dorsal/ventral color variation (red, green, and black), yet the taxonomic relationships between these color variants are not clearly understood. We performed the first comparative analysis of de novo assembled transcriptome data from three color variants of A. japonicus. Using the Illumina platform, we sequenced nearly 177,596,774 clean reads representing a total of 18.2Gbp of sea cucumber transcriptome. A comparison of over 0.3 million transcript scaffolds against the Uniprot/Swiss-Prot database yielded 8513, 8602, and 8588 positive matches for green, red, and black body color transcriptomes, respectively. Using the Panther gene classification system, we assessed an extensive and diverse set of expressed genes in three color variants and found that (1) among the three color variants of A. japonicus, genes associated with RNA binding protein, oxidoreductase, nucleic acid binding, transferase, and KRAB box transcription factor were most commonly expressed; and (2) the main protein functional classes are differently regulated in all three color variants (extracellular matrix protein and phosphatase for green color, transporter and potassium channel for red color, and G-protein modulator and enzyme modulator for black color). This work will assist in the discovery and annotation of novel genes that play significant morphological and physiological roles in color variants of A. japonicus, and these sequence data will provide a useful set of resources for the rapidly growing sea cucumber aquaculture industry. Copyright © 2016 Elsevier B.V. All rights reserved.

  11. Worldwide Analysis of Sedimentary DNA Reveals Major Gaps in Taxonomic Knowledge of Deep-Sea Benthos

    DEFF Research Database (Denmark)

    Sinniger, Frédéric; Pawlowski, Jan; Harii, Saki

    2016-01-01

    in 39 deep-sea sediment samples from bathyal and abyssal depths worldwide. The eDNA dataset was dominated by meiobenthic taxa and we identified all animal phyla commonly found in the deep-sea benthos; yet, the diversity within these phyla remains largely unknown. The large numbers of taxonomically...... for pure and applied deep-sea environmental research but also emphasizes the necessity to integrate such new approaches with traditional morphology-based examination of deep-sea organisms....

  12. Pitfalls in velocity analysis for strongly contrasting, layered media - Example from the Chalk Group, North Sea

    Science.gov (United States)

    Montazeri, Mahboubeh; Uldall, Anette; Moreau, Julien; Nielsen, Lars

    2018-02-01

    Knowledge about the velocity structure of the subsurface is critical in key seismic processing sequences, for instance, migration, depth conversion, and construction of initial P- and S-wave velocity models for full-waveform inversion. Therefore, the quality of subsurface imaging is highly dependent upon the quality of the seismic velocity analysis. Based on a case study from the Danish part of the North Sea, we show how interference caused by multiples, converted waves, and thin-layer effects may lead to incorrect velocity estimation, if such effects are not accounted for. Seismic wave propagation inside finely layered reservoir rocks dominated by chalk is described by two-dimensional finite-difference wave field simulation. The rock physical properties used for the modeling are based on an exploration well from the Halfdan field in the Danish sector of the North Sea. The modeling results are compared to seismic data from the study area. The modeling shows that interference of primaries with multiples, converted waves and thin-bed effects can give rise to strong anomalies in standard velocity analysis plots. Consequently, root-mean-square (RMS) velocity profiles may be erroneously picked. In our study area, such mis-picking can introduce errors in, for example, the thickness estimation of the layers near the base of the studied sedimentary strata by 11% to 26%. Tests show that front muting and bandpass filtering cannot significantly improve the quality of velocity analysis in our study. However, we notice that spiking deconvolution applied before velocity analysis may to some extent reduce the impact of interference and, therefore, reduce the risk of erroneous picking of the velocity function.

  13. Molecular epidemiology of Neisseria gonorrhoeae strains circulating in Indonesia using multi-locus variable number tandem repeat analysis (MLVA) and Neisseria gonorrhoeae multi-antigen sequence typing (NG-NAST) techniques

    NARCIS (Netherlands)

    Hananta, I. Putu Yuda; van Dam, Alje Pieter; Schim van der Loeff, Maarten Franciscus; Dierdorp, Mirjam; Wind, Carolien Marleen; Soebono, Hardyanto; de Vries, Henry John Christiaan; Bruisten, Sylvia Maria

    2018-01-01

    Background: Control of gonorrhea in resource-limited countries, such as Indonesia, is mostly unsuccessful. Examining Neisseria gonorrhoeae (Ng) transmission networks using strain typing might help prioritizing public health interventions. Methods: In 2014, urogenital Ng strains were isolated from

  14. Analysis and modeling of the seasonal South China Sea temperature cycle using remote sensing

    Science.gov (United States)

    Twigt, Daniel J.; de Goede, Erik D.; Schrama, Ernst J. O.; Gerritsen, Herman

    2007-10-01

    The present paper describes the analysis and modeling of the South China Sea (SCS) temperature cycle on a seasonal scale. It investigates the possibility to model this cycle in a consistent way while not taking into account tidal forcing and associated tidal mixing and exchange. This is motivated by the possibility to significantly increase the model’s computational efficiency when neglecting tides. The goal is to develop a flexible and efficient tool for seasonal scenario analysis and to generate transport boundary forcing for local models. Given the significant spatial extent of the SCS basin and the focus on seasonal time scales, synoptic remote sensing is an ideal tool in this analysis. Remote sensing is used to assess the seasonal temperature cycle to identify the relevant driving forces and is a valuable source of input data for modeling. Model simulations are performed using a three-dimensional baroclinic-reduced depth model, driven by monthly mean sea surface anomaly boundary forcing, monthly mean lateral temperature, and salinity forcing obtained from the World Ocean Atlas 2001 climatology, six hourly meteorological forcing from the European Center for Medium range Weather Forecasting ERA-40 dataset, and remotely sensed sea surface temperature (SST) data. A sensitivity analysis of model forcing and coefficients is performed. The model results are quantitatively assessed against climatological temperature profiles using a goodness-of-fit norm. In the deep regions, the model results are in good agreement with this validation data. In the shallow regions, discrepancies are found. To improve the agreement there, we apply a SST nudging method at the free water surface. This considerably improves the model’s vertical temperature representation in the shallow regions. Based on the model validation against climatological in situ and SST data, we conclude that the seasonal temperature cycle for the deep SCS basin can be represented to a good degree. For shallow

  15. Statistical analysis of accident data associated with sea transport (data from 1994-1997). Annex 1

    International Nuclear Information System (INIS)

    Schneider, T.; Tabarre, M.; Armingaud, F.

    2001-01-01

    This analysis is based on Lloyd's database concerning sea transport accidents for the 1994-1997 period and completes the previous analysis based on 1994 data. It gives an accurate description of the world fleet and the most severe ship accidents (total losses), as well as the frequencies of accident (in average on the 1994-1997 period the frequency of accident for cargo carrying ships is 2.57.10 -3 loss /ship.year). Furthermore, an analysis has been performed on the ship casualties recorded by the Marine Accident Investigation Branch (MAIB) for UK vessels for the 1990-1996 period, this database including all accidents for which a declaration has been made to authorities (for example, the average frequency of fires derived from this analysis is 1.36.10 -2 per ship.year, this occurrence corresponding to the occurrence of initiating events of fire). Concerning fire accidents aboard ships supposed to be representative of the radioactive material transporters, a specific analysis was achieved by the French Bureau Veritas, on a selection of the world casualties (total losses) for the 1978-1988 period. This analysis related to the origin of the fire points out that it originates mainly in the machinery room and quarters. In a few cases the fire duration recorded is more than one day. (author)

  16. Odor-conditioned rheotaxis of the sea lamprey: modeling, analysis and validation

    International Nuclear Information System (INIS)

    Choi, Jongeun; Jeon, Soo; Johnson, Nicholas S; Brant, Cory O; Li, Weiming

    2013-01-01

    Mechanisms for orienting toward and locating an odor source are sought in both biology and engineering. Chemical ecology studies have demonstrated that adult female sea lamprey show rheotaxis in response to a male pheromone with dichotomous outcomes: sexually mature females locate the source of the pheromone whereas immature females swim by the source and continue moving upstream. Here we introduce a simple switching mechanism modeled after odor-conditioned rheotaxis for the sea lamprey as they search for the source of a pheromone in a one-dimensional riverine environment. In this strategy, the females move upstream only if they detect that the pheromone concentration is higher than a threshold value and drifts down (by turning off control action to save energy) otherwise. In addition, we propose various uncertainty models such as measurement noise, actuator disturbance, and a probabilistic model of a concentration field in turbulent flow. Based on the proposed model with uncertainties, a convergence analysis showed that with this simplistic switching mechanism, the lamprey converges to the source location on average in spite of all such uncertainties. Furthermore, a slightly modified model and its extensive simulation results explain the behaviors of immature female lamprey near the source location. (paper)

  17. Gene expression patterns during the larval development of European sea bass (dicentrarchus labrax) by microarray analysis.

    Science.gov (United States)

    Darias, M J; Zambonino-Infante, J L; Hugot, K; Cahu, C L; Mazurais, D

    2008-01-01

    During the larval period, marine teleosts undergo very fast growth and dramatic changes in morphology, metabolism, and behavior to accomplish their metamorphosis into juvenile fish. Regulation of gene expression is widely thought to be a key mechanism underlying the management of the biological processes required for harmonious development over this phase of life. To provide an overall analysis of gene expression in the whole body during sea bass larval development, we monitored the expression of 6,626 distinct genes at 10 different points in time between 7 and 43 days post-hatching (dph) by using heterologous hybridization of a rainbow trout cDNA microarray. The differentially expressed genes (n = 485) could be grouped into two categories: genes that were generally up-expressed early, between 7 and 23 dph, and genes up-expressed between 25 and 43 dph. Interestingly, among the genes regulated during the larval period, those related to organogenesis, energy pathways, biosynthesis, and digestion were over-represented compared with total set of analyzed genes. We discuss the quantitative regulation of whole-body contents of these specific transcripts with regard to the ontogenesis and maturation of essential functions that take place over larval development. Our study is the first utilization of a transcriptomic approach in sea bass and reveals dynamic changes in gene expression patterns in relation to marine finfish larval development.

  18. Microsatellite Analysis for Identification of Individuals Using Bone from the Extinct Steller's Sea Cow (Hydrodamalis gigas).

    Science.gov (United States)

    Warner, Jeffery F; Harpole, Michael G; Crerar, Lorelei D

    2017-01-01

    Microsatellite DNA can provide more detailed population genetic information than mitochondrial DNA which is normally used to research ancient bone. The methods detailed in this chapter can be utilized for any type of bone. However, for this example, four microsatellite loci were isolated from Steller's sea cow (Hydrodamalis gigas) using published primers for manatee and dugong microsatellites. The primers DduC05 (Broderick et al., Mol Ecol Notes 6:1275-1277, 2007), Tmakb60, TmaSC5 (Pause et al., Mol Ecol Notes 6: 1073-1076, 2007), and TmaE11 (Garcia-Rodriguez et al., Mol Ecol 12:2161-2163, 2000) all successfully amplified microsatellites from H. gigas. The DNA samples were from bone collected on Bering or St. Lawrence Islands. DNA was analyzed using primers with the fluorescent label FAM-6. Sequenced alleles were then used to indicate a difference in the number of repeats and thus a difference in individuals. This is the first time that H. gigas microsatellite loci have been isolated. These techniques for ancient bone microsatellite analysis allow an estimate of population size for a newly discovered St. Lawrence Island sea cow population.

  19. Analysis of the Scattering Characteristics of Sea Surface with the Influence from Internal Wave

    Directory of Open Access Journals (Sweden)

    Wei Yi-wen

    2015-06-01

    Full Text Available The internal wave travels beneath the sea surface and modulate the roughness of the sea surface through the wave-current interaction. This makes some dark and bright bands can be observed in the Synthetic Aperture Radar (SAR images. In this paper, we first establish the profile of the internal wave based on the KdV equations; then, the action balance equation and the wave-current interaction source function are used to modify the sea spectrum; finally, the two-scale theory based facet model is combined with the modified sea spectrum to calculate the scattering characteristics of the sea. We have simulated the scattering coefficient distribution of the sea with an internal wave traveling through. The influence on the scattering coefficients and the Doppler spectra under different internal wave parameters and sea state parameters are analyzed.

  20. Coupling analysis on the soft ground settlement laws in Qinshan nuclear power phase I sea wall project

    International Nuclear Information System (INIS)

    Sun Feng; Pan Rong; Zhu Xiuyun; Zhang Dingli

    2011-01-01

    Qinshan Nuclear Power Phase I sea wall project is a barrier engineering in defending the design basis flooding, which is of importance to the safety of NPP. The geological condition has the feature of high compressibility and low penetration, such as the soft ground of 1 + 450 section of Qinshan Nuclear Power Phase I sea wall. Based on parameters acquired from the site experiment, 3-D finite difference analysis is put forward to study the feature of consolidation settlement laws, which can embody the fluid-solid coupling interaction. The conclusions of numerical analysis agree well with the in-site measured data, and it, can contribute to the design and construction of raising sea wall project. (authors)

  1. Weighted gene co-expression network analysis reveals potential genes involved in early metamorphosis process in sea cucumber Apostichopus japonicus.

    Science.gov (United States)

    Li, Yongxin; Kikuchi, Mani; Li, Xueyan; Gao, Qionghua; Xiong, Zijun; Ren, Yandong; Zhao, Ruoping; Mao, Bingyu; Kondo, Mariko; Irie, Naoki; Wang, Wen

    2018-01-01

    Sea cucumbers, one main class of Echinoderms, have a very fast and drastic metamorphosis process during their development. However, the molecular basis under this process remains largely unknown. Here we systematically examined the gene expression profiles of Japanese common sea cucumber (Apostichopus japonicus) for the first time by RNA sequencing across 16 developmental time points from fertilized egg to juvenile stage. Based on the weighted gene co-expression network analysis (WGCNA), we identified 21 modules. Among them, MEdarkmagenta was highly expressed and correlated with the early metamorphosis process from late auricularia to doliolaria larva. Furthermore, gene enrichment and differentially expressed gene analysis identified several genes in the module that may play key roles in the metamorphosis process. Our results not only provide a molecular basis for experimentally studying the development and morphological complexity of sea cucumber, but also lay a foundation for improving its emergence rate. Copyright © 2017 Elsevier Inc. All rights reserved.

  2. Protocol for Microplastics Sampling on the Sea Surface and Sample Analysis

    Science.gov (United States)

    Kovač Viršek, Manca; Palatinus, Andreja; Koren, Špela; Peterlin, Monika; Horvat, Petra; Kržan, Andrej

    2016-01-01

    Microplastic pollution in the marine environment is a scientific topic that has received increasing attention over the last decade. The majority of scientific publications address microplastic pollution of the sea surface. The protocol below describes the methodology for sampling, sample preparation, separation and chemical identification of microplastic particles. A manta net fixed on an »A frame« attached to the side of the vessel was used for sampling. Microplastic particles caught in the cod end of the net were separated from samples by visual identification and use of stereomicroscopes. Particles were analyzed for their size using an image analysis program and for their chemical structure using ATR-FTIR and micro FTIR spectroscopy. The described protocol is in line with recommendations for microplastics monitoring published by the Marine Strategy Framework Directive (MSFD) Technical Subgroup on Marine Litter. This written protocol with video guide will support the work of researchers that deal with microplastics monitoring all over the world. PMID:28060297

  3. Estimation of Heavy Elements Pollution in Sea Plants (Algae) by Using Neutron Activation Analysis

    International Nuclear Information System (INIS)

    El-Ghondi, A. A.; El-Mismary, Y. A.; Etwir, R. H.; Machiouf, M. A.; Ben Shaban, Y.; Abia, R.

    2007-01-01

    The total content of trace elements were determined in 50 samples of sea plants (macro algae) collected from Tripoli coast area (Tajura, El schab, Dat Elemad ) in Libya. The samples were investigated as an indication of heavy elements pollution. In this paper, the total amounts of Zn, Sc, Fe, Co, Cr, Ba, Cs, Sb, Rb, and Hf concentration were determined by using Neutron Activation Analysis in Tajura research center. High levels of Zn and Cr and slightly increasing in amount of Co and Fe are considered as normal values comparing with polluted area particularly with Fe and Co in investigated samples. Statistical calculation of the results have shown a positive relationship between the contents of Ba, Sc, Hf, Cr and Fe-Sb but no relation with Zn and other investigated trace elements contents. Further investigation should be carried out to confirm these findings and correlate them to source attribution.

  4. Time-lapse seismic analysis of the North Sea Fulmar Field

    Energy Technology Data Exchange (ETDEWEB)

    Johnston, David H.; McKenny, Robert S.; Burkhart, Tucker D.

    1998-12-31

    Time-lapse seismic analysis has been applied to two 3-D seismic surveys acquired over the central North Sea Fulmar field in a pre-production survey shot in 1977, reprocessed in 1987, and a survey in 1992. The Upper Jurassic reservoirs in the field have been under production since 1982. Differences in averaged impedance between the 1977 and 1992 surveys clearly show the effects of water influx and pressure decline. The changes observed in the seismic data are overall consistent with predictions obtained from a full-field, history-matched simulation. Differences in details may suggest areas of bypassed oil. Dta quality is not sufficient to serve as the sole basis for drilling decisions. 1 ref., 6 figs.

  5. INAA, AAS, and lead isotope analysis of ancient lead anchors from the black SEA

    International Nuclear Information System (INIS)

    Kuleff, I.; Djingova, R.; Alexandrova, A.

    1995-01-01

    Lead stock of wooden-lead anchors found along the Bulgarian Black Sea coast and typo logically dated VI c. B.C. - III c. A.D. have been analyzed for chemical composition and lead isotope ratios by INAA, AAS and mass spectrometry. Using multivariate methods for analysis as well as simple bi variate plots the lead for production of the stocks was localized as originating from Laurion, Thassos, Troas, Chalkidike and the Rhodopes. In general, the chemical composition is not recommended to be used for provenance study of lead artefacts. Combining the results from this study with the existing typo logical classification certain conclusion about the production and distribution of lead anchors in the Aegean region are made. (author). 22 refs., 3 figs., 4 tabs

  6. Risk Analysis of Coastal hazard Considering Sea-level Rise and Local Environment in Coastal Area

    Science.gov (United States)

    Sangjin, P.; Lee, D. K.; KIM, H.; Ryu, J. E.; Yoo, S.; Ryoo, H.

    2014-12-01

    Recently, natural hazards has been more unpredictable with increasing frequency and strength due to climate change. Especially, coastal areas would be more vulnerable in the future because of sea-level rise (SLR). In case of Korea, it is surrounded by oceans and has many big cities at coastal area, thus a hazard prevention plan in coastal area is absolutely necessary. However, prior to making the plan, finding areas at risk would be the first step. In order to find the vulnerable area, local characteristics of coastal areas should also be considered along with SLR. Therefore, the objective of the research is to find vulnerable areas, which could be damaged by coastal hazards considering local environment and SLR of coastal areas. Spatial scope of the research was set up as 1km from the coastline according to the 'coastal management law' in Korea. The assessment was done up to the year of 2050, and the highest sea level rise scenario was used. For risk analysis, biophysical and socioeconomic characteristics were considered as to represent local characteristics of coastal area. Risk analysis was carried out through the combination of 'possibility of hazard' and the 'level of damages', and both of them reflect the above-mentioned regional characteristics. Since the range of inundation was narrowed down to the inundation from typhoon in this research, the possibility of inundation caused by typhoon was estimated by using numerical model, which calculated the height of storm surge considering wave, tide, sea-level pressure and SLR. Also the level of damage was estimated by categorizing the socioeconomic character into four factors; human, infrastructure, ecology and socioeconomic. Variables that represent each factor were selected and used in damage estimation with their classification and weighting value. The result shows that the urban coastal areas are more vulnerable and hazardous than other areas because of socioeconomic factors. The east and the south coast are

  7. Trace metal analysis in sea grasses from Mexican Caribbean Coast by particle induced X-ray emission (PIXE)

    International Nuclear Information System (INIS)

    Solis, C.; Issac O, K.; Martinez, A.; Lavoisier, E.; Martinez, M. A.

    2008-01-01

    The growing urban and tourist activity in the Mexican Caribbean coasts has resulted in an increase of chemical substances, metals in particular, discharged to the coastal waters. In order to reach an adequate management and conservation of these marine ecosystems it is necessary to perform an inventory of the actual conditions that reflect the vulnerability and the level of damage. Sea-grasses are considered good biological indicators of heavy metal contamination in marine systems. The goal of this preliminary work is to evaluate the concentrations of trace metals such as Cr, Mn, Fe, Co, Cu, Zn, and Pb in Thalassia testudinum, a very common sea-grass in the Mexican Caribbean Sea. Samples were collected from several locations in the coasts of the Yucatan Peninsula: Holbox, Blanquizal and Punta Allen, areas virtually uninfluenced by anthropogenic activities. Trace elements in different part plants were determined by particle induced X-ray emission (PIXE). This is a very suitable technique since it offers a fast, accurate and multi-element analysis. Also, the analysis by PIXE can be performed directly on powdered leaves without a laborious sample preparation. The trace metal concentration determined in sea-grasses growing in Caribbean generally fall in the range of the lowest valuables reported for sea grasses from the Gulf of Mexico. The results indicate that the studied areas do not present contamination by heavy metals. (Author)

  8. Effects of Repeated-Sprint Training in Hypoxia on Sea-Level Performance: A Meta-Analysis.

    Science.gov (United States)

    Brocherie, Franck; Girard, Olivier; Faiss, Raphaël; Millet, Grégoire P

    2017-08-01

    Repeated-sprint training in hypoxia (RSH) is a recent intervention regarding which numerous studies have reported effects on sea-level physical performance outcomes that are debated. No previous study has performed a meta-analysis of the effects of RSH. We systematically reviewed the literature and meta-analyzed the effects of RSH versus repeated-sprint training in normoxia (RSN) on key components of sea-level physical performance, i.e., best and mean (all sprint) performance during repeated-sprint exercise and aerobic capacity (i.e., maximal oxygen uptake [[Formula: see text

  9. Energy analysis of a desalination process of sea water with nuclear energy

    International Nuclear Information System (INIS)

    Martinez L, G.; Valle H, J.

    2016-09-01

    In the present work, is theoretically proven that the residual heat, removed by the chillers in the stage prior to the compression of the recuperative Brayton cycle with which nuclear power plants operate with high temperature gas reactors (HTGR), can be used to produce stem and desalinate seawater. The desalination process selected for the analysis, based on its operating characteristics, is the Multi-Stage Distillation (Med). The Med process will use as energy source, for the flash evaporation process in the flash trap, the residual heat that the reactor coolant dissipates to the environment in order to increase the compression efficiency of the same; the energy dissipated depends on the operating conditions of the reactor. The Med distillation process requires saturated steam at low pressure which can be obtained by means of a heat exchanger, taking advantage of the residual heat, where the relative low temperatures with which the process operates make the nuclear plants with HTGR reactors ideal for desalination of sea water, because they do not require major modifications to their design of their operation. In this work the energy analysis of a six-stage Med module coupled to the chillers of an HTGR reactor of the Pebble Bed Modular Reactor type is presented. Mathematical modeling was obtained by differential equations of mass and energy balances in the system. The results of the analysis are presented in a table for each distillation stage, estimating the pure water obtained as a function of the heat supplied. (Author)

  10. Observations of the thermal environment on Red Sea platform reefs: a heat budget analysis

    KAUST Repository

    Davis, K. A.

    2011-03-11

    Hydrographic measurements were collected on nine offshore reef platforms in the eastern Red Sea shelf region, north of Jeddah, Saudi Arabia. The data were analyzed for spatial and temporal patterns of temperature variation, and a simple heat budget analysis was performed with the goal of advancing our understanding of the physical processes that control temperature variability on the reef. In 2009 and 2010, temperature variability on Red Sea reef platforms was dominated by diurnal variability. The daily temperature range on the reefs, at times, exceeded 5°C-as large as the annual range of water temperature on the shelf. Additionally, our observations reveal the proximity of distinct thermal microclimates within the bounds of one reef platform. Circulation on the reef flat is largely wave driven. The greatest diurnal variation in water temperature occurs in the center of larger reef flats and on reefs protected from direct wave forcing, while smaller knolls or sites on the edges of the reef flat tend to experience less diurnal temperature variability. We found that both the temporal and spatial variability in water temperature on the reef platforms is well predicted by a heat budget model that includes the transfer of heat at the air-water interface and the advection of heat by currents flowing over the reef. Using this simple model, we predicted the temperature across three different reefs to within 0.4°C on the outer shelf using only information about bathymetry, surface heat flux, and offshore wave conditions. © 2011 Springer-Verlag.

  11. Controlled source electromagnetic data analysis with seismic constraints and rigorous uncertainty estimation in the Black Sea

    Science.gov (United States)

    Gehrmann, R. A. S.; Schwalenberg, K.; Hölz, S.; Zander, T.; Dettmer, J.; Bialas, J.

    2016-12-01

    In 2014 an interdisciplinary survey was conducted as part of the German SUGAR project in the Western Black Sea targeting gas hydrate occurrences in the Danube Delta. Marine controlled source electromagnetic (CSEM) data were acquired with an inline seafloor-towed array (BGR), and a two-polarization horizontal ocean-bottom source and receiver configuration (GEOMAR). The CSEM data are co-located with high-resolution 2-D and 3-D seismic reflection data (GEOMAR). We present results from 2-D regularized inversion (MARE2DEM by Kerry Key), which provides a smooth model of the electrical resistivity distribution beneath the source and multiple receivers. The 2-D approach includes seafloor topography and structural constraints from seismic data. We estimate uncertainties from the regularized inversion and compare them to 1-D Bayesian inversion results. The probabilistic inversion for a layered subsurface treats the parameter values and the number of layers as unknown by applying reversible-jump Markov-chain Monte Carlo sampling. A non-diagonal data covariance matrix obtained from residual error analysis accounts for correlated errors. The resulting resistivity models show generally high resistivity values between 3 and 10 Ωm on average which can be partly attributed to depleted pore water salinities due to sea-level low stands in the past, and locally up to 30 Ωm which is likely caused by gas hydrates. At the base of the gas hydrate stability zone resistivities rise up to more than 100 Ωm which could be due to gas hydrate as well as a layer of free gas underneath. However, the deeper parts also show the largest model parameter uncertainties. Archie's Law is used to derive estimates of the gas hydrate saturation, which vary between 30 and 80% within the anomalous layers considering salinity and porosity profiles from a distant DSDP bore hole.

  12. Concerted evolution of sea anemone neurotoxin genes is revealed through analysis of the Nematostella vectensis genome.

    Science.gov (United States)

    Moran, Yehu; Weinberger, Hagar; Sullivan, James C; Reitzel, Adam M; Finnerty, John R; Gurevitz, Michael

    2008-04-01

    Gene families, which encode toxins, are found in many poisonous animals, yet there is limited understanding of their evolution at the nucleotide level. The release of the genome draft sequence for the sea anemone Nematostella vectensis enabled a comprehensive study of a gene family whose neurotoxin products affect voltage-gated sodium channels. All gene family members are clustered in a highly repetitive approximately 30-kb genomic region and encode a single toxin, Nv1. These genes exhibit extreme conservation at the nucleotide level which cannot be explained by purifying selection. This conservation greatly differs from the toxin gene families of other animals (e.g., snakes, scorpions, and cone snails), whose evolution was driven by diversifying selection, thereby generating a high degree of genetic diversity. The low nucleotide diversity at the Nv1 genes is reminiscent of that reported for DNA encoding ribosomal RNA (rDNA) and 2 hsp70 genes from Drosophila, which have evolved via concerted evolution. This evolutionary pattern was experimentally demonstrated in yeast rDNA and was shown to involve unequal crossing-over. Through sequence analysis of toxin genes from multiple N. vectensis populations and 2 other anemone species, Anemonia viridis and Actinia equina, we observed that the toxin genes for each sea anemone species are more similar to one another than to those of other species, suggesting they evolved by manner of concerted evolution. Furthermore, in 2 of the species (A. viridis and A. equina) we found genes that evolved under diversifying selection, suggesting that concerted evolution and accelerated evolution may occur simultaneously.

  13. An analysis of resistivity monitoring data on the sea dike, Teaan, South Korea

    Science.gov (United States)

    Song, S. Y.; Nam, M. J.; Cho, S. O.; Lim, S. K.

    2017-12-01

    Many coastal levees have been constructed within the peninsula of the South Korea to prevent tidal waves from overflowing. For a proper maintenance of the levees, it is important to monitor the embankments from being deteriorated. For the monitoring, this study make a feasibility study on the application of time-lapse (TL) electrical resistivity surveys. The survey can detect anomalies within the embankments, which are possibly generated by defects of facilities or seawater intrusion. Among coastal levees in Korea, we made TL surveys over the Iwon dike located on the Taean-gun, Chungcheongnam-do in the south-west of the South Korea in April 2015. Since visible seepage of the seewater was observed nearby the dike, we conducted monitoring in this area. TL resistivity surveys had been made 11 times for the duration of nine days along a survey line, which located 10 m away from the crest and parallel to the dike. For the analysis and interpretation of the TL data, we first analysed the effects of sea-level variation on the TL electrical resistivity data through numerical simulation. The simulation of TL data are made using dipole-dipole array with an electrode spacing of 3 m along a survey line longer than 100 m. Numerical test showed that it can be difficult to analyse effects of seawater on the dike in single data. So we conducted 4D DC inversion of TL data to analyse spatial distribution of seawater to detect possible seepage region. For the improvement of inversion resolution, we considered a spatial regularization properly representing the characteristics of levees whose major seepage occur across the embankment in order to improve the resolution. In making 4D inversion, we chose several TL data sets which are obtained at a similar conditions, e.g., similar sea level or similar time of a day. From this 4D inversion, we could analyse weak zone to be necessary to monitor continuously.

  14. Comparative de novo transcriptome analysis of male and female Sea buckthorn.

    Science.gov (United States)

    Bansal, Ankush; Salaria, Mehul; Sharma, Tashil; Stobdan, Tsering; Kant, Anil

    2018-02-01

    Sea buckthorn is a dioecious medicinal plant found at high altitude. The plant has both male and female reproductive organs in separate individuals. In this article, whole transcriptome de novo assemblies of male and female flower bud samples were carried out using Illumina NextSeq 500 platform to determine the role of the genes involved in sex determination. Moreover, genes with differential expression in male and female transcriptomes were identified to understand the underlying sex determination mechanism. The current study showed 63,904 and 62,272 coding sequences (CDS) in female and male transcriptome data sets, respectively. 16,831 common CDS were screened out from both transcriptomes, out of which 625 were upregulated and 491 were found to be downregulated. To understand the potential regulatory roles of differentially expressed genes in metabolic networks and biosynthetic pathways: KEGG mapping, gene ontology, and co-expression network analysis were performed. Comparison with Flowering Interactive Database (FLOR-ID) resulted in eight differentially expressed genes viz. CHD3-type chromatin-remodeling factor PICKLE ( PKL ), phytochrome-associated serine/threonine-protein phosphatase ( FYPP ), protein TOPLESS ( TPL ), sensitive to freezing 6 ( SFR6 ), lysine-specific histone demethylase 1 homolog 1 ( LDL1 ), pre-mRNA-processing-splicing factor 8A ( PRP8A ), sucrose synthase 4 ( SUS4 ), ubiquitin carboxyl-terminal hydrolase 12 ( UBP12 ), known to be broadly involved in flowering, photoperiodism, embryo development, and cold response pathways. Male and female flower bud transcriptome data of Sea buckthorn may provide comprehensive information at genomic level for the identification of genetic regulation involved in sex determination.

  15. Measurement and Elemental Analysis of Muria Sea Water for Primary Water of PWR

    International Nuclear Information System (INIS)

    Dwi Biyantoro; Kris Tri Basuki

    2007-01-01

    Treatment process of water of free mineral and study area of processing of sea water to meet the need of water cooling of PWR. Desalination is a separation process used to reduce the dissolved salt content of saline water. All desalination processes involve three liquid streams: the saline feedwater (brackish water or seawater), low salinity product water, and very saline concentrate. Seawater Muria Jepara is feed type 1 with content salt is low and relative suspension and weight metals is low. There are two types of membrane process used for desalination: reverse osmosis (RO) and electrodialysis (ED). The starting of process is difficult and expensive. However, starting since 1950, desalination process appear to be economically practical for ordinary use. There are 3 key elements significantly affect to the technical performance and long term characteristic type, i.e. 1) energy, 2) corrosivity of seawater, and 3) desalination process technology. These elements closely inter related and important for design improvements and technical performance optimization. From the analysis of sea water of gulf Muria Jepara was found as follows : Fe = 0.176 ± 0.012 ppm, Pb = 0.612 ± 0.017 ppm, Cd = 52.567 ± 0.750 ppm, Cu = 0.044 ± 0.005 ppm, Zn = 0.061 ± 0.003 ppm, Mn = 0.057 ± 0.003 ppm, Ca between = 365.256 - 368.654 ppm, Na between = 9572.000 - 9775.000 ppm, Mg between 759.000 - 779.00 ppm and Ni = 0.524 ± 0.005 ppm. Cost production of process using reverse osmosis as around 0.9 - 1 US$/m3, while using electrodialysis is around 1.2 US$/m3, and by using evaporation process or distillation process is around 1.4 - 1.6 US$/m3. (author)

  16. Determination of gold and indium in sea water by neutron activation analysis

    International Nuclear Information System (INIS)

    Tateno, Yukio; Ohta, Naoichi

    1979-01-01

    A combination of electrodeposition on graphite with neutron activation analysis was used for the determination of gold and indium in sea water. At a potential of -0.70 V vs. the silver-silver chloride electrode, gold and indium were electrolyzed on to a graphite electrode (1.1 cm phi x 0.2 cm) from 100 ml of 0.5 M sodium chloride. Recovery yield of gold was constant at pH from 1 to 3 and was independent of the initial concentration of gold, (0.01 -- 1) ppb. For a 72-h electrolysis at pH 2 the recovery yield of gold was 92%, while that of indium was 32%. The graphite electrode was exposed to a thermal neutron flux of 5.1 x 10 11 or 1.5 x 10 12 n cm -2 s -1 : 5 min exposure for indium and 6 to 12 h for gold. After appropriate decay periods the activities of 198 Au and sup(116m)In were measured for 2000 s and 300 s, respectively, with a 4000-channel pulse-height analyser and a Ge(Li) detector. The total amount of gold in 1 l of a sea water sample (Tokyo Bay) was (0.023 +- 0.001)μg, in which nonelectrolyzable gold was estimated to be 0.005 μg. Indium concentration in the sample was too low to be determined by the present method. Detection limit for indium was 1 ppb. (author)

  17. Metagenomic Analysis of Genes Encoding Nutrient Cycling Pathways in the Microbiota of Deep-Sea and Shallow-Water Sponges.

    Science.gov (United States)

    Li, Zhiyong; Wang, Yuezhu; Li, Jinlong; Liu, Fang; He, Liming; He, Ying; Wang, Shenyue

    2016-12-01

    Sponges host complex symbiotic communities, but to date, the whole picture of the metabolic potential of sponge microbiota remains unclear, particularly the difference between the shallow-water and deep-sea sponge holobionts. In this study, two completely different sponges, shallow-water sponge Theonella swinhoei from the South China Sea and deep-sea sponge Neamphius huxleyi from the Indian Ocean, were selected to compare their whole symbiotic communities and metabolic potential, particularly in element transformation. Phylogenetically diverse bacteria, archaea, fungi, and algae were detected in both shallow-water sponge T. swinhoei and deep-sea sponge N. huxleyi, and different microbial community structures were indicated between these two sponges. Metagenome-based gene abundance analysis indicated that, though the two sponge microbiota have similar core functions, they showed different potential strategies in detailed metabolic processes, e.g., in the transformation and utilization of carbon, nitrogen, phosphorus, and sulfur by corresponding microbial symbionts. This study provides insight into the putative metabolic potentials of the microbiota associated with the shallow-water and deep-sea sponges at the whole community level, extending our knowledge of the sponge microbiota's functions, the association of sponge- microbes, as well as the adaption of sponge microbiota to the marine environment.

  18. Development of Procedures for the Analysis of Components of Dumped Chemical Weapons and Their Principal Transformation Products in Sea Water

    International Nuclear Information System (INIS)

    Saveleva, E. I.; Koryagina, N. L.; Radilov, A. S.; Khlebnikova, N. S.; Khrustaleva, V. S.

    2007-01-01

    A package of chemical analytical procedures was developed for the detection of products indicative of the presence of damped chemical weapons in the Baltic Sea. The principal requirements imposed upon the procedures were the following: high sensitivity, reliable identification of target compounds, wide range of components covered by survey analysis, and lack of interferences from sea salts. Thiodiglycol, a product of hydrolysis of sulfur mustard reportedly always detected in the sites of damping chemical weapons in the Baltic Sea, was considered the principal marker. We developed a high-sensitivity procedure for the determination of thiodiglycol in sea water, involving evaporation of samples to dryness in a vacuum concentrator, followed by tert-butyldimethylsilylation of the residue and GCMS analysis in the SIM mode with meta-fluorobenzoic acid as internal reference. The detection limit of thiodiglycol was 0.001 mg/l, and the procedure throughput was up to 30 samples per day. The same procedure, but with BSTFA as derivatizing agent instead of MTBSTFA, was used for preparing samples for survey analysis of nonvolatile components. In this case, full mass spectra were measured in the GCMS analysis. The use of BSTFA was motivated by the fact that trimethylsilyl derivatives are much wider represented in electronic mass spectral databases. The identification of sulfur mustard, volatile transformation products of sulfur mustard and lewisite, as well as chloroacetophenone in sea water was performed by means of GCMS in combination with SPME. The survey GC-MS analysis was focused on the identification of volatile and nonvolatile toxic chemicals whose mass spectra are included in the OPCW database (3219 toxic chemicals, precursors, and transformation products) with the use of AMDIS software (version 2.62). Using 2 GC-MS instruments, we could perform the survey analysis for volatile and nonvolatile components of up to 20 samples per day. Thus, the package of three procedures

  19. Information and analysis document. Hydrocarbons of the Caspian sea: actors and stakes; Dossier d'information et d'analyse. Les hydrocarbures de mer Caspienne: acteurs et enjeux

    Energy Technology Data Exchange (ETDEWEB)

    Noel, P

    1998-03-01

    The Caspian sea basin constitutes an important petroleum reserve from which the exploration and development just begin. It should provide near 5 % of the world petroleum offer in 2015. To evaluate the stakes of the situation, the author presents an analysis of the Caspian sea reserves in three main parts: the Caspian sea hydrocarbons and the energy geo-politics, the realizations and the projects of the transport infrastructures, the international participations in the main petroleum and gaseous contracts. (A.L.B.)

  20. Understanding extreme sea levels for broad-scale coastal impact and adaptation analysis

    NARCIS (Netherlands)

    Wahl, T.; Haigh, I.D.; Nicholls, R.J.; Arns, A.; Dangendorf, S.; Hinkel, J.; Slangen, A.B.A.

    2017-01-01

    One of the main consequences of mean sea level rise (SLR) on human settlements is an increase in flood risk due to an increase in the intensity and frequency of extreme sea levels (ESL). While substantial research efforts are directed towards quantifying projections and uncertainties of future

  1. Microfaunal analysis of late Quaternary deposits of the northern Bering Sea.

    Science.gov (United States)

    McDougall, K.

    1982-01-01

    Holocene microfaunal associations and distribution patterns define three inner-shelf (1-20m) biofacies in Norton Sound, northern Bering Sea. The Holocene facies relations are the basis for interpreting early Holocene and late Pleistocene environmental conditions in the NE Bering Sea area. Norton Sound cores provide evidence of two marine transgressions and a varying river input.-from Author

  2. Nonlinear analysis of the occurrence of hurricanes in the Gulf of Mexico and the Caribbean Sea

    Directory of Open Access Journals (Sweden)

    B. Rojo-Garibaldi

    2018-04-01

    Full Text Available Hurricanes are complex systems that carry large amounts of energy. Their impact often produces natural disasters involving the loss of human lives and materials, such as infrastructure, valued at billions of US dollars. However, not everything about hurricanes is negative, as hurricanes are the main source of rainwater for the regions where they develop. This study shows a nonlinear analysis of the time series of the occurrence of hurricanes in the Gulf of Mexico and the Caribbean Sea obtained from 1749 to 2012. The construction of the hurricane time series was carried out based on the hurricane database of the North Atlantic basin hurricane database (HURDAT and the published historical information. The hurricane time series provides a unique historical record on information about ocean–atmosphere interactions. The Lyapunov exponent indicated that the system presented chaotic dynamics, and the spectral analysis and nonlinear analyses of the time series of the hurricanes showed chaotic edge behavior. One possible explanation for this chaotic edge is the individual chaotic behavior of hurricanes, either by category or individually regardless of their category and their behavior on a regular basis.

  3. Integrated analysis of beach ridge and lagoon systems as indicator of sea-level changes

    Science.gov (United States)

    Sander, Lasse; Hede, Mikkel U.; Fruergaard, Mikkel; Morigi, Caterina; Johannessen, Peter N.; Nielsen, Lars; Clemmensen, Lars B.; Nielsen, Lars H.; Pejrup, Morten

    2015-04-01

    Beach ridges and lagoons are common features of the modern coastal landscape in much of Denmark and represent an important part of the Holocene raised marine deposits. We here present our results from investigations into the possibilities of retrieving continuous relative sea-level (RSL) information from these sedimentary archives, as facilitated by the analysis of surface morphology, coring, subsurface imaging, absolute chronology, and modern analogues. The island of Samsø (55˚51'N, 10˚36'E) was chosen as a case study example. While each of the used archives merely covers a part of the mid to late Holocene developments, their joint analysis allows identifying and separating periods of rapid RSL rise, stability and fall over most of the island's marine stage. We present possible correlations of the data from the lagoons with data from a wide beach-ridge system and suggest causal relations of the RSL reconstruction with the spatial arrangements of marine and glacial landforms on Samsø. The integrated use of a geographical perspective combined with geological precision and methodology has proven to be of great value for understanding temporal, spatial, and process relations in the investigated coastal environment. The study stresses the value of analyzing genetically independent though complementary sedimentary archives to retrieve more complete and potentially more robust results. The presented approach may be useful in microtidal, sediment-surplus environments with a transgressive-regressive Holocene RSL history.

  4. Nonlinear analysis of the occurrence of hurricanes in the Gulf of Mexico and the Caribbean Sea

    Science.gov (United States)

    Rojo-Garibaldi, Berenice; Salas-de-León, David Alberto; Adela Monreal-Gómez, María; Sánchez-Santillán, Norma Leticia; Salas-Monreal, David

    2018-04-01

    Hurricanes are complex systems that carry large amounts of energy. Their impact often produces natural disasters involving the loss of human lives and materials, such as infrastructure, valued at billions of US dollars. However, not everything about hurricanes is negative, as hurricanes are the main source of rainwater for the regions where they develop. This study shows a nonlinear analysis of the time series of the occurrence of hurricanes in the Gulf of Mexico and the Caribbean Sea obtained from 1749 to 2012. The construction of the hurricane time series was carried out based on the hurricane database of the North Atlantic basin hurricane database (HURDAT) and the published historical information. The hurricane time series provides a unique historical record on information about ocean-atmosphere interactions. The Lyapunov exponent indicated that the system presented chaotic dynamics, and the spectral analysis and nonlinear analyses of the time series of the hurricanes showed chaotic edge behavior. One possible explanation for this chaotic edge is the individual chaotic behavior of hurricanes, either by category or individually regardless of their category and their behavior on a regular basis.

  5. Analysis of hydrodynamic characteristics of unmanned underwater vehicle moving close to the sea bottom

    Directory of Open Access Journals (Sweden)

    Xiao-xu Du

    2014-03-01

    Full Text Available The accurate research on the hydrodynamics of unmanned underwater vehicle (UUV, which moves close to the sea bottom, has a great significance for its maneuverability. The structured grid of the computational models with different distances to the sea bottom and attack angles is generated by Ansys ICEM, and the flow field near the sea bottom is simulated using CFX. The characteristics of the drag, lift, pitching moment influenced by the distance to sea bottom and the attack angle are studied. The result shows that the drag coefficient increases with the decrease of distance, while it increases with the increase of attack angle. There exists attraction force when UUV moves close to the sea bottom, and the attraction force increases with the decrease in distance. The lift coefficient increases with the increase in attack angle. The absolute value of the pitching moment coefficient increases with the decrease in distance and the increase in attack angle.

  6. Intricate patterns of phylogenetic relationships in the olive family as inferred from multi-locus plastid and nuclear DNA sequence analyses: a close-up on Chionanthus and Noronhia (Oleaceae).

    Science.gov (United States)

    Hong-Wa, Cynthia; Besnard, Guillaume

    2013-05-01

    Noronhia represents the most successful radiation of the olive family (Oleaceae) in Madagascar with more than 40 named endemic species distributed in all ecoregions from sea level to high mountains. Its position within the subtribe Oleinae has, however, been largely unresolved and its evolutionary history has remained unexplored. In this study, we generated a dataset of plastid (trnL-F, trnT-L, trnS-G, trnK-matK) and nuclear (internal transcribed spacer [ITS]) DNA sequences to infer phylogenetic relationships within Oleinae and to examine evolutionary patterns within Noronhia. Our sample included most species of Noronhia and representatives of the ten other extant genera within the subtribe with an emphasis on Chionanthus. Bayesian inferences and maximum likelihood analyses of plastid and nuclear data indicated several instances of paraphyly and polyphyly within Oleinae, with some geographic signal. Both plastid and ITS data showed a polyphyletic Noronhia that included Indian Ocean species of Chionanthus. They also found close relationships between Noronhia and African Chionanthus. However, the plastid data showed little clear differentiation between Noronhia and the African Chionanthus whereas relationships suggested by the nuclear ITS data were more consistent with taxonomy and geography. We used molecular dating to discriminate between hybridization and lineage sorting/gene duplication as alternative explanations for these topological discordances and to infer the biogeographic history of Noronhia. Hybridization between African Chionanthus and Noronhia could not be ruled out. However, Noronhia has long been established in Madagascar after a likely Cenozoic dispersal from Africa, suggesting any hybridization between representatives of African and Malagasy taxa was ancient. In any case, the African and Indian Ocean Chionanthus and Noronhia together formed a strongly supported monophyletic clade distinct and distant from other Chionanthus, which calls for a revised

  7. Analysis of hyper-baric biofilms on engineering surfaces formed in the Deep Sea

    Science.gov (United States)

    Meier, A.; Tsaloglou, N. M.; Connelly, D.; Keevil, B.; Mowlem, M.

    2012-04-01

    Long-term monitoring of the environment is essential to our understanding of global processes, such as global warming, and their impact. As biofilm formation occurs after only short deployment periods in the marine environment, it is a major problem in long-term operation of environmental sensors. This makes the development of anti-fouling strategies for in situ sensors critical to their function. The effects on sensors can range from measurement drift, which can be compensated, to blockage of channels and material degradation, rendering them inoperative. In general, the longer the deployment period the more severe the effects of the biofouling become. Until now, biofilm research has focused mainly on the eutrophic and euphotic zones of the oceans. Hyper-baric biofilms are poorly understood due to difficulties in experimental setup and the assumption that biofouling in these oligotrophic regions could be regarded as insignificant. Our study shows significant biofilm formation occurs in the deep sea. We deployed a variety of materials, typically used in engineering structures, on a 4500 metre deep mooring during a cruise to the Cayman Trough, for 10 days. The materials were clear plain glass, poly-methyl methacrylate (PMMA), Delrin™, and copper, a known antifouling agent. The biofilms were studied by fluorescence microscopy and molecular analysis. For microscopy the nucleic acid stain, SYTO©9, was used and surface coverage was quantified by using a custom MATLAB™ program. Further molecular analyses, including UV Vis spectrometric quantification of DNA, nucleic acid amplification using Polymerase Chain Reaction (PCR), and Denaturing Gradient Gel Electrophoresis (DGGE), were utilised for the analysis of the microbial community composition of these biofilms. Six 16S/18S universal primer sets representative for the three kingdoms, Archea, Bacteria, and Eukarya were used for the PCR and DGGE. Preliminary results from fluorescence microscopy showed that the biofilm

  8. Statistical analysis of the acceleration of Baltic mean sea-level rise, 1900-2012

    Directory of Open Access Journals (Sweden)

    Birgit Hünicke

    2016-07-01

    Full Text Available We analyse annual mean sea-level records from tide-gauges located in the Baltic and parts of the North Sea with the aim of detecting an acceleration of sea-level rise over the 20textsuperscript{th} and 21textsuperscript{st} centuries. The acceleration is estimated as a (1 fit to a polynomial of order two in time, (2 a long-term linear increase in the rates computed over gliding overlapping decadal time segments, and (3 a long-term increase of the annual increments of sea level.The estimation methods (1 and (2 prove to be more powerful in detecting acceleration when tested with sea-level records produced in global climate model simulations. These methods applied to the Baltic-Sea tide-gauges are, however, not powerful enough to detect a significant acceleration in most of individual records, although most estimated accelerations are positive. This lack of detection of statistically significant acceleration at the individual tide-gauge level can be due to the high-level of local noise and not necessarily to the absence of acceleration.The estimated accelerations tend to be stronger in the north and east of the Baltic Sea. Two hypothesis to explain this spatial pattern have been explored. One is that this pattern reflects the slow-down of the Glacial Isostatic Adjustment. However, a simple estimation of this effect suggests that this slow-down cannot explain the estimated acceleration. The second hypothesis is related to the diminishing sea-ice cover over the 20textsuperscript{th} century. The melting o of less saline and colder sea-ice can lead to changes in sea-level. Also, the melting of sea-ice can reduce the number of missing values in the tide-gauge records in winter, potentially influencing the estimated trends and acceleration of seasonal mean sea-level This hypothesis cannot be ascertained either since the spatial pattern of acceleration computed for winter and summer separately are very similar. The all-station-average-record displays an

  9. Modelling tsunami inundation for risk analysis at the Andaman Sea Coast of Thailand

    Science.gov (United States)

    Kaiser, G.; Kortenhaus, A.

    2009-04-01

    The mega-tsunami of Dec. 26, 2004 strongly impacted the Andaman Sea coast of Thailand and devastated coastal ecosystems as well as towns, settlements and tourism resorts. In addition to the tragic loss of many lives, the destruction or damage of life-supporting infrastructure, such as buildings, roads, water & power supply etc. caused high economic losses in the region. To mitigate future tsunami impacts there is a need to assess the tsunami hazard and vulnerability in flood prone areas at the Andaman Sea coast in order to determine the spatial distribution of risk and to develop risk management strategies. In the bilateral German-Thai project TRAIT research is performed on integrated risk assessment for the Provinces Phang Nga and Phuket in southern Thailand, including a hazard analysis, i.e. modelling tsunami propagation to the coast, tsunami wave breaking and inundation characteristics, as well as vulnerability analysis of the socio-economic and the ecological system in order to determine the scenario-based, specific risk for the region. In this presentation results of the hazard analysis and the inundation simulation are presented and discussed. Numerical modelling of tsunami propagation and inundation simulation is an inevitable tool for risk analysis, risk management and evacuation planning. While numerous investigations have been made to model tsunami wave generation and propagation in the Indian Ocean, there is still a lack in determining detailed inundation patterns, i.e. water depth and flow dynamics. However, for risk management and evacuation planning this knowledge is essential. As the accuracy of the inundation simulation is strongly depending on the available bathymetric and the topographic data, a multi-scale approach is chosen in this work. The ETOPO Global Relief Model as a bathymetric basis and the Shuttle Radar Topography Mission (SRTM90) have been widely applied in tsunami modelling approaches as these data are free and almost world

  10. Sea surface temperature predictions using a multi-ocean analysis ensemble scheme

    Science.gov (United States)

    Zhang, Ying; Zhu, Jieshun; Li, Zhongxian; Chen, Haishan; Zeng, Gang

    2017-08-01

    This study examined the global sea surface temperature (SST) predictions by a so-called multiple-ocean analysis ensemble (MAE) initialization method which was applied in the National Centers for Environmental Prediction (NCEP) Climate Forecast System Version 2 (CFSv2). Different from most operational climate prediction practices which are initialized by a specific ocean analysis system, the MAE method is based on multiple ocean analyses. In the paper, the MAE method was first justified by analyzing the ocean temperature variability in four ocean analyses which all are/were applied for operational climate predictions either at the European Centre for Medium-range Weather Forecasts or at NCEP. It was found that these systems exhibit substantial uncertainties in estimating the ocean states, especially at the deep layers. Further, a set of MAE hindcasts was conducted based on the four ocean analyses with CFSv2, starting from each April during 1982-2007. The MAE hindcasts were verified against a subset of hindcasts from the NCEP CFS Reanalysis and Reforecast (CFSRR) Project. Comparisons suggested that MAE shows better SST predictions than CFSRR over most regions where ocean dynamics plays a vital role in SST evolutions, such as the El Niño and Atlantic Niño regions. Furthermore, significant improvements were also found in summer precipitation predictions over the equatorial eastern Pacific and Atlantic oceans, for which the local SST prediction improvements should be responsible. The prediction improvements by MAE imply a problem for most current climate predictions which are based on a specific ocean analysis system. That is, their predictions would drift towards states biased by errors inherent in their ocean initialization system, and thus have large prediction errors. In contrast, MAE arguably has an advantage by sampling such structural uncertainties, and could efficiently cancel these errors out in their predictions.

  11. Phase analysis of corrosion products of carbon steel in sea water

    International Nuclear Information System (INIS)

    Garcia R, J.; Yee M, H.; Maldonado M, H.; Nunez, L.; Reguera, E.

    1998-01-01

    Nowadays carbon steel continues being the most widely used metallic material in marine and coastal buildings. The economic losses, due to corrosion processes, of those countries with important industrial and social activities in coastal regions are highly significant. In this sense the evaluation of the corrosion process of carbon steel and other materials in seawater or in coastal zones is a primary task for protection methods or to predict the hfe of an specific installation. In this communication we present the phases analysis, using XRD and Moessbauer techniques, of corrosion products of a carbon steel (CT3, equivalent to AISI C1020) exposed in two natural corrosion stations in the Caribbean sea (Cuba). The exposition time run from days to 36 months and the evaluated rust are characteristic of samples totally immersed in seawater, from the splash zone and form coastal zones at different distance from the shoreline. Quantitative phase analysis shown presence of magnetite (Fe 3 O 4 ), maghemite (y-Fe 2 O 3 ), akaganeite (B-FeOOH), lepidocrocite (y-FeOOH) and goethite (a-FeOOH) as iron bearing phases, and CaCO 3 (Calcite and aragonite), these last ones mainly in the immersed samples. Quantitative phase analysis by XRD was implemented as a linear combination of the patterns characteristic of all the detected phases and an appropriate model for the background. The quantitative results were used in kinetic models to understand the phase transformation between the iron oxides and oxy hydroxides in the studied conditions. The XRD qualitative and quantitative results were corroborated by Moessbauer spectroscopy in the temperature range of 20 to 300 K. (Author)

  12. Systems analysis for disposal of radioactive wastes in deep sea bottom

    International Nuclear Information System (INIS)

    Karpf, A.D.

    1988-12-01

    Part I of the report outlines substantial fundamentals and results that impart sufficient knowledge to understand the resepctive calculations, the influence of essential parameters and to allow unambiguous conclusions as regards the potential riks of a repository in the deep sea bottom. In addition, significant features of the developed programme are described and an overview of international cooperation in this field is given. The more detailed parts II and III deal with the actual repository in the sea sediment layer and its sea biosphere, respectively. (orig./DG) [de

  13. Comparative bacterial community analysis in relatively pristine and anthropogenically influenced mangrove ecosystems on the Red Sea.

    Science.gov (United States)

    Ullah, Riaz; Yasir, Muhammad; Khan, Imran; Bibi, Fehmida; Sohrab, Sayed Sartaj; Al-Ansari, Ahmed; Al-Abbasi, Fahad; Al-Sofyani, Abdulmohsin A; Daur, Ihsanullah; Lee, Seon-Woo; Azhar, Esam I

    2017-08-01

    Mangrove habitats are ecologically important ecosystems that are under severe pressure worldwide because of environmental changes and human activities. In this study, 16S rRNA gene amplicon deep-sequencing was used to compare bacterial communities in Red Sea mangrove ecosystems at anthropogenically influenced coastal sites with those at a relatively pristine island site. In total, 32 phyla were identified from the mangrove rhizospheres, with Proteobacteria predominating at each of the studied sites; however, the relative abundance was significantly decreased at the coastal sites (Mastorah, MG-MS; Ar-Rayis, MG-AR) compared with the pristine island site near Dhahban (MG-DBI). The phyla Actinobacteria, Firmicutes, Acidobacteria, Chloroflexi, Spirochetes, and Planctomycetes were present at a relative abundance of >1% at the MG-MS and MG-AR sites, but their concentration was <1% at the MG-DBI site. A total of 1659 operational taxonomic units (OTUs) were identified at the species level, and approximately 945 OTUs were shared across the different sampling sites. Multivariate principal coordinate data analysis separated the MG-DBI site from the MG-AR and MG-MS cluster. Specific bacterial taxa were enriched at each location, and in particular, the genera Pseudoalteromonas and Cobetia were predominantly identified in the MG-DBI site compared with the anthropogenically influenced coastal sites.

  14. Simulation and Analysis of Passive Rolling Compensation of High Sea Salvage System

    Directory of Open Access Journals (Sweden)

    Lin Liqun

    2017-01-01

    Full Text Available Method and device of a flexible interception and salvage system was introduced in this paper. In order to study the effect of wave motion on salvage operation, we proposed a passive wave compensation scheme that utilizes a combination of variable-pitch cylinders and accumulators, and established the mathematical vibration model of the rolling motion of the salvage compensation system. With the relationships between the stiffness coefficient and the accumulator parametric of passive compensated gas-liquid system, we determined the effective compensation stiffness range through Mathematica simulation analysis. The relationship between the roll displacement of the salvage arm and the initial volume Vo of the accumulator has been analysed. The results show that the accumulatorVo in a certain range has a great influence on the passive compensation. However, when the volume is greater than 20m3, the compensation effect is weakened, and tend to a certain value, irrespective of the passive system accumulator volume capacity, it does not achieve full compensation. The results have important guidance on the design and optimization of rolling passive compensation of the practical high sea salvage system.

  15. Application of PIXE analysis to environmental samples stable element distribution in sea algae by scanning microprobe analysis

    International Nuclear Information System (INIS)

    Ishikawa, M.; Kitao, K.; Imaseki, H.; Ishii, T.; Uchida, S.

    1984-01-01

    The resolution of a 33+-3 μm microprobe focussed with quadrupole doublet installed at the 3 MV Van de Graaff of the National Institute of Radiological Sciences, Japan, was used for the present analysis. Brown algae, Hizikia fusiforme was the sample target bombarded with a 2 MeV proton beam collimated mechanically into a rectangular image of 100 μm x 700 μm. Scanning across the sample target prepared into a longitudinal section from the caulis of the algae provided the following observations. More than 12 elements such as Al, Si, P, Cl, Ca, Mn, Fe, Cu, Zn, As, Br and Sr were determined simultaneously, together with their distributional information across the diameter. In the medullary layer, Mn and Zn were specific in their accumulation, while the deposition of Fe, Cu, As and Br were observed to be high in the epithelial layer, especially Fe and Cu which were found on the surface, where they contacted ambient sea water, but no significant change in pattern was indicated for such elements as Al, P and Cl. The PIXE microprobe analysis was, therefore, effective in its detectability for elements below a few ppm level, resultantly providing further possibilities for collecting information from bio-medical and environmental samples on trace characterization of elements. (author)

  16. DNA metabarcoding for diet analysis and biodiversity: A case study using the endangered Australian sea lion (Neophoca cinerea).

    Science.gov (United States)

    Berry, Tina E; Osterrieder, Sylvia K; Murray, Dáithí C; Coghlan, Megan L; Richardson, Anthony J; Grealy, Alicia K; Stat, Michael; Bejder, Lars; Bunce, Michael

    2017-07-01

    The analysis of apex predator diet has the ability to deliver valuable insights into ecosystem health, and the potential impacts a predator might have on commercially relevant species. The Australian sea lion ( Neophoca cinerea ) is an endemic apex predator and one of the world's most endangered pinnipeds. Given that prey availability is vital to the survival of top predators, this study set out to understand what dietary information DNA metabarcoding could yield from 36 sea lion scats collected across 1,500 km of its distribution in southwest Western Australia. A combination of PCR assays were designed to target a variety of potential sea lion prey, including mammals, fish, crustaceans, cephalopods, and birds. Over 1.2 million metabarcodes identified six classes from three phyla, together representing over 80 taxa. The results confirm that the Australian sea lion is a wide-ranging opportunistic predator that consumes an array of mainly demersal fauna. Further, the important commercial species Sepioteuthis australis (southern calamari squid) and Panulirus cygnus (western rock lobster) were detected, but were present in fish, sharks and rays, clarify previous knowledge of sea lion prey, and some, such as eel taxa and two gastropod species, represent new dietary insights. Even with modest sample sizes, a spatial analysis of taxa and operational taxonomic units found within the scat shows significant differences in diet between many of the sample locations and identifies the primary taxa that are driving this variance. This study provides new insights into the diet of this endangered predator and confirms the efficacy of DNA metabarcoding of scat as a noninvasive tool to more broadly define regional biodiversity.

  17. Analysis of fatty acid composition of sea cucumber Apostichopus japonicus using multivariate statistics

    Science.gov (United States)

    Xu, Qinzeng; Gao, Fei; Xu, Qiang; Yang, Hongsheng

    2014-11-01

    Fatty acids (FAs) provide energy and also can be used to trace trophic relationships among organisms. Sea cucumber Apostichopus japonicus goes into a state of aestivation during warm summer months. We examined fatty acid profiles in aestivated and non-aestivated A. japonicus using multivariate analyses (PERMANOVA, MDS, ANOSIM, and SIMPER). The results indicate that the fatty acid profiles of aestivated and non-aestivated sea cucumbers differed significantly. The FAs that were produced by bacteria and brown kelp contributed the most to the differences in the fatty acid composition of aestivated and nonaestivated sea cucumbers. Aestivated sea cucumbers may synthesize FAs from heterotrophic bacteria during early aestivation, and long chain FAs such as eicosapentaenoic (EPA) and docosahexaenoic acid (DHA) that produced from intestinal degradation, are digested during deep aestivation. Specific changes in the fatty acid composition of A. japonicus during aestivation needs more detailed study in the future.

  18. Observations of the thermal environment on Red Sea platform reefs: a heat budget analysis

    KAUST Repository

    Davis, K. A.; Lentz, S. J.; Pineda, J.; Farrar, J. T.; Starczak, V. R.; Churchill, J. H.

    2011-01-01

    Hydrographic measurements were collected on nine offshore reef platforms in the eastern Red Sea shelf region, north of Jeddah, Saudi Arabia. The data were analyzed for spatial and temporal patterns of temperature variation, and a simple heat budget

  19. Bacterial community composition of South China Sea sediments through pyrosequencing-based analysis of 16S rRNA genes.

    Science.gov (United States)

    Zhu, Daochen; Tanabe, Shoko-Hosoi; Yang, Chong; Zhang, Weimin; Sun, Jianzhong

    2013-01-01

    Subseafloor sediments accumulate large amounts of organic and inorganic materials that contain a highly diverse microbial ecosystem. The aim of this study was to survey the bacterial community of subseafloor sediments from the South China Sea. Pyrosequencing of over 265,000 amplicons of the V3 hypervariable region of the 16S ribosomal RNA gene was performed on 16 sediment samples collected from multiple locations in the northern region of the South China Sea from depths ranging from 35 to 4000 m. A total of 9,726 operational taxonomic units (OTUs; between 695 and 2819 unique OTUs per sample) at 97% sequence similarity level were generated. In total, 40 bacterial phyla including 22 formally described phyla and 18 candidate phyla, with Proteobacteria, Firmicutes, Planctomycetes, Actinobacteria and Chloroflexi being most diverse, were identified. The most abundant phylotype, accounting for 42.6% of all sequences, belonged to Gammaproteobacteria, which possessed absolute predominance in the samples analyzed. Among the 18 candidate phyla, 12 were found for the first time in the South China Sea. This study provided a novel insight into the composition of bacterial communities of the South China Sea subseafloor. Furthermore, abundances and community similarity analysis showed that the compositions of the bacterial communities are very similar at phylum level at different depths from 35-4000 m.

  20. Cloning and expression analysis of innate immune genes from red sea bream to assess different susceptibility to megalocytivirus infection.

    Science.gov (United States)

    Jin, J W; Kim, Y C; Hong, S; Kim, M S; Jeong, J B; Jeong, H D

    2017-04-01

    As suggested by the Office International des Epizooties (OIE), fishes belonging to the genus Oplegnathus are more sensitive to megalocytivirus infection than other fish species including red sea bream (Pagrus major). To assess the roles of the innate immune response to these different susceptibilities, we cloned the genes encoding inflammatory factors including IL-8 and COX-2, and the antiviral factor like Mx from red sea bream for the first time and performed phylogenetic and structural analysis. Analysed expression levels of IL-1β, IL-8 and COX-2 and the antiviral factor like Mx genes performed with in vivo challenge experiment showed no difference in inflammatory gene expression or respiratory burst activity between red sea bream and rock bream (Oplegnathus fasciatus). However, the Mx gene expression levels in red sea bream were markedly higher than those in rock bream, suggesting the importance of type I interferon (IFN)-induced proteins, particularly Mx, during megalocytivirus infection, rather than inflammation-related genes. The in vitro challenge experiments using embryonic primary cultures derived from both fish species showed no difference in cytopathic effects (CPE), viral replication profiles, and inflammatory and Mx gene expression pattern between the two fish species. © 2016 John Wiley & Sons Ltd.

  1. Bacterial community composition of South China Sea sediments through pyrosequencing-based analysis of 16S rRNA genes.

    Directory of Open Access Journals (Sweden)

    Daochen Zhu

    Full Text Available BACKGROUND: Subseafloor sediments accumulate large amounts of organic and inorganic materials that contain a highly diverse microbial ecosystem. The aim of this study was to survey the bacterial community of subseafloor sediments from the South China Sea. METHODOLOGY/PRINCIPAL FINDINGS: Pyrosequencing of over 265,000 amplicons of the V3 hypervariable region of the 16S ribosomal RNA gene was performed on 16 sediment samples collected from multiple locations in the northern region of the South China Sea from depths ranging from 35 to 4000 m. A total of 9,726 operational taxonomic units (OTUs; between 695 and 2819 unique OTUs per sample at 97% sequence similarity level were generated. In total, 40 bacterial phyla including 22 formally described phyla and 18 candidate phyla, with Proteobacteria, Firmicutes, Planctomycetes, Actinobacteria and Chloroflexi being most diverse, were identified. The most abundant phylotype, accounting for 42.6% of all sequences, belonged to Gammaproteobacteria, which possessed absolute predominance in the samples analyzed. Among the 18 candidate phyla, 12 were found for the first time in the South China Sea. CONCLUSIONS: This study provided a novel insight into the composition of bacterial communities of the South China Sea subseafloor. Furthermore, abundances and community similarity analysis showed that the compositions of the bacterial communities are very similar at phylum level at different depths from 35-4000 m.

  2. [Spatial heterogeneity in body condition of small yellow croaker in Yellow Sea and East China Sea based on mixed-effects model and quantile regression analysis].

    Science.gov (United States)

    Liu, Zun-Lei; Yuan, Xing-Wei; Yan, Li-Ping; Yang, Lin-Lin; Cheng, Jia-Hua

    2013-09-01

    By using the 2008-2010 investigation data about the body condition of small yellow croaker in the offshore waters of southern Yellow Sea (SYS), open waters of northern East China Sea (NECS), and offshore waters of middle East China Sea (MECS), this paper analyzed the spatial heterogeneity of body length-body mass of juvenile and adult small yellow croakers by the statistical approaches of mean regression model and quantile regression model. The results showed that the residual standard errors from the analysis of covariance (ANCOVA) and the linear mixed-effects model were similar, and those from the simple linear regression were the highest. For the juvenile small yellow croakers, their mean body mass in SYS and NECS estimated by the mixed-effects mean regression model was higher than the overall average mass across the three regions, while the mean body mass in MECS was below the overall average. For the adult small yellow croakers, their mean body mass in NECS was higher than the overall average, while the mean body mass in SYS and MECS was below the overall average. The results from quantile regression indicated the substantial differences in the allometric relationships of juvenile small yellow croakers between SYS, NECS, and MECS, with the estimated mean exponent of the allometric relationship in SYS being 2.85, and the interquartile range being from 2.63 to 2.96, which indicated the heterogeneity of body form. The results from ANCOVA showed that the allometric body length-body mass relationships were significantly different between the 25th and 75th percentile exponent values (F=6.38, df=1737, P<0.01) and the 25th percentile and median exponent values (F=2.35, df=1737, P=0.039). The relationship was marginally different between the median and 75th percentile exponent values (F=2.21, df=1737, P=0.051). The estimated body length-body mass exponent of adult small yellow croakers in SYS was 3.01 (10th and 95th percentiles = 2.77 and 3.1, respectively). The

  3. Comparative Analysis of Total Phenolic Content in Sea Buckthorn Wine and Other Selected Fruit Wines

    OpenAIRE

    Bharti Negi; Gargi Dey

    2009-01-01

    This is the first report from India on a beverage resulting from alcoholic fermentation of the juice of sea buckthorn (Hippophae rhamnoides L) using lab isolated yeast strain. The health promoting potential of the product was evaluated based on its total phenolic content. The most important finding was that under the present fermentation condition, the total phenolic content of the wine product was 689 mg GAE/L. Investigation of influence of bottle ageing on the sea buckthorn wine showed a sl...

  4. Dry well analysis of well 6407/10-5 at 793 area, Norwegian Sea.

    OpenAIRE

    Qamar, Javeria

    2017-01-01

    Master's thesis in Petroleum Geosciences Engineering. The region of investigation is located in the Norwegian Sea, which is an area of high hydrocarbon activity. Many reservoirs have been successfully identified, drilled, and now they are producing in large oil & gas fields. However, the Norwegian Sea has a complex geology as it resulted from Permian to Late Jurassic crustal extension, which created rift basins and several horst and graben structures. Most of the important hydrocarbon rese...

  5. Modeling and analysis of Off-beam lidar returns from thick clouds, snow, and sea ice

    International Nuclear Information System (INIS)

    Varnai, T.; Cahalan, R. F.

    2009-01-01

    A group of recently developed lidar (laser ranging and detection) systems can detect signals returning from several wide field-of-views, allowing them to observe the way laser pulses spread in thick media. The new capability enabled accurate measurements of cloud geometrical thickness and promises improved measurements of internal cloud structure as well as snow and sea ice thickness. This paper presents a brief overview of radiation transport simulation techniques and data analysis methods that were developed for multi-view lidar applications and for and considering multiple scattering effects in single-view lidar data. In discussing methods for simulating the three-dimensional spread of lidar pulses, we present initial results from Phase 3 of the Intercomparison of 3-D Radiation Codes (I3RC) project. The results reveal some differences in the capabilities of participating models, while good agreement among several models provides consensus results suitable for testing future models. Detailed numerical results are available at the I3RC web site at http://i3rc.gsfc.nasa. gov. In considering data analysis methods, we focus on the Thickness from Off-beam Returns (THOR) lidar. THOR proved successful in measuring the geometrical thickness of optically thick clouds; here we focus on its potential for retrieving the vertical profile of scattering coefficient in clouds and for measuring snow thickness. Initial observations suggest considerable promise but also reveal some limitations, for example that the maximum retrievable snow thickness drops from about 0.5 m in pristine areas to about 0.15 m in polluted regions. (authors)

  6. Allergen analysis of sea urchin roe using sera from five patients.

    Science.gov (United States)

    Tanaka, Kenichi; Kondo, Yasuto; Inuo, Chisato; Nakajima, Yoichi; Tsuge, Ikuya; Doi, Satoru; Yanagihara, Shigeto; Yoshikawa, Tetsushi; Urisu, Atsuo

    2014-01-01

    Sea urchin roe can cause anaphylactic reactions the first time they are consumed; therefore, careful clinical attention should be paid to their effects. However, no previous study has examined the allergens in sea urchin roe using sera from more than one patient. We attempted to identify sea urchin allergens using sera from 5 patients with sea urchin allergies. We enrolled 5 patients with relevant medical histories, positive results on a skin prick test and/or a food challenge test, and high levels of sea urchin-specific IgE in an enzyme-linked immunosorbent assay. We performed SDS-PAGE, immunoblotting, immunoblot inhibition, and N-terminal amino acid sequence detection. Ten protein bands ranging from 18 to 170 kDa were detected in more than 2 patients' sera. In immunoblotting, the protein band for the 170-kDa major yolk protein was recognized by 4 of the 5 sera. Furthermore, the reaction between IgE and the protein band for egg cortical vesicle protein (18 kDa) was inhibited by the addition of salmon roe extract. Major yolk protein was confirmed to be one of the main allergens in sea urchin roe. In addition, egg cortical vesicle protein (18 kDa) was demonstrated to be an important protein for cross-reactivity with salmon roe. © 2014 S. Karger AG, Basel.

  7. Chemical compositions of magnetic, stony spherules from deep-sea sediments determined by instrumental neutron activation analysis

    International Nuclear Information System (INIS)

    Yamakoshi, Kazuo

    1984-01-01

    Chemical compositions of magnetic, stony spherules from deep sea sediments were determined by instrumental neutron activation analysis. High Ir, Au, Ni and Co contents indicate their extraterrestrial origin. The obtained compositions are considerably different from those of chondrites. It can be qualitatively interpreted, however, that cosmic matters having the compositions of chondrites are changed into magnetic, stony spherules by thermal degenerations during their atmospheric entry. (author)

  8. Baltic Sea ice and environmental and societal implications from the comparative analysis of the Bay of Bothnia and the Gulf of Riga

    Directory of Open Access Journals (Sweden)

    Élise Lépy

    2012-12-01

    Full Text Available This article contributes to many studies on sea ice often carried out by geophysicists and rarely by geographers. Thus, it aims to understand climatic and marine processes of ice formation and break-up of littoral waters and coastal sea, and their environmental, economic and societal consequences in the Baltic Sea. The interest of this research lies in the comparative analysis of two regions: the Bay of Bothnia and the Gulf of Riga. These two case studies are politically, economically and culturally different and help to understand the diversity of reactions and adaptations to the human management of the natural constraint imposed by sea ice phenomena. By using a systemic approach, quite common when studying geographical issues of nature and societies, the work has contributed to a better knowledge of the natural environment of Baltic Sea ice showing a significant interannual variability and a spatial internal diversity of sea ice conditions in the Baltic Sea. It also raises the questions of the environmental determinism which is rejected by the remarkable adaptability of coastal population. Finally, the socio-economic implications of historical changes of sea ice features are emphasized showing that future Baltic Sea ice conditions should be carefully considered when talking about global evolution.

  9. Trend Analysis of Nitrogen Deposition to Baltic Sea and its sub basins

    Science.gov (United States)

    Semeena, V. S.; Jerzy, Bartnicki

    2009-04-01

    Since the beginning of last century, Baltic Sea has changed from a clear-water sea into a eutrophic marine environment. Eutrophication is the major problem in the Baltic Sea. Excessive nitrogen and phosphorus loads coming from land-based sources within and outside the catchment area of the bordering countries of the Baltic Sea are the main cause of the eutrophication in the sea. Even though a major part of nitrogen(75%) and phosphorus load(95%) enter the sea via rivers or as water-born discharges, 25% of the nitrogen load comes as atmospheric deposition. Numerical models are the best tools to measure atmospheric deposition into sea waters. We have used the latest version of the Unified EMEP model - which has been developed at the EMEP/MSC-W (Meteorological Synthesizing Centre - West of EMEP) for simulating atmospheric transport and deposition of acidifying and eutrophying compounds as well as photo-oxidants in Europe- to study the trends in atmospheric deposition of nitrogen into Baltic Sea for the period 1995-2006. The model domain covers Europe and the Atlantic Ocean. The model grid (of the size 170×133) has a horizontal resolution of 50 km at 60o N, which is consistent with the resolution of emission data reported to CLRTAP. Approximately 10 of these layers are placed below 2 km to obtain high resolution of the boundary layer which is of special importance to the long range transport of air pollution. EMEP model has been thouroughly validated (Fagerli et.al.[1], Simpson et.al.[2], Simpson et.al.[3] ) The contribution of deposition of nitrogen into Baltic Sea from each of the bordering countries of the Baltic Sea and the deposition trends for the period 1995-2006 has been analysed and the results will be presented. References: [1]. Fagerli H., Simpson D. and Aas W.: Model performance for sulphur and nitrogen compounds for the period 1980 to 2000. [In:] L. Tarraśon, (editor), Transboundary Acidification, Eutrophication and Ground Level Ozone in Europe. EMEP

  10. Biogeochemical analysis of ancient Pacific Cod bone suggests Hg bioaccumulation was linked to paleo sea level rise and climate change

    Directory of Open Access Journals (Sweden)

    Maribeth S. Murray

    2015-02-01

    Full Text Available Deglaciation at the end of the Pleistocene initiated major changes in ocean circulation and distribution. Within a brief geological time, large areas of land were inundated by sea-level rise and today global sea level is 120 m above its minimum stand during the last glacial maximum. This was the era of modern sea shelf formation; climate change caused coastal plain flooding and created broad continental shelves with innumerable consequences to marine and terrestrial ecosystems and human populations. In Alaska, the Bering Sea nearly doubled in size and stretches of coastline to the south were flooded, with regional variability in the timing and extent of submergence. Here we suggest how past climate change and coastal flooding are linked to mercury bioaccumulation that could have had profound impacts on past human populations and that, under conditions of continued climate warming, may have future impacts. Biogeochemical analysis of total mercury (tHg and 13C/15N ratios in the bone collagen of archaeologically recovered Pacific Cod (Gadus macrocephalus bone shows high levels of tHg during early/mid-Holocene. This pattern cannot be linked to anthropogenic activity or to food web trophic changes, but may result from natural phenomena such as increases in productivity, carbon supply and coastal flooding driven by glacial melting and sea-level rise. The coastal flooding could have led to increased methylation of Hg in newly submerged terrestrial land and vegetation. Methylmercury is bioaccumulated through aquatic food webs with attendant consequences for the health of fish and their consumers, including people. This is the first study of tHg levels in a marine species from the Gulf of Alaska to provide a time series spanning nearly the entire Holocene and we propose that past coastal flooding resulting from climate change had the potential to input significant quantities of Hg into marine food webs and subsequently to human consumers.

  11. Environmental Factors and Intermodal Freight Transportation: Analysis of the Decision Bases in the Case of Spanish Motorways of the Sea

    Directory of Open Access Journals (Sweden)

    Miguel Ángel López-Navarro

    2014-03-01

    Full Text Available Today, there is widespread consensus about the notable, yet simultaneously growing, negative environmental impacts generated by the transportation sector. Experts working in a number of different fields consider the current situation to be unsustainable and possible measures to reduce emissions and foster sustainability are being encouraged. The European Commission has highlighted the need to shift away from unimodal road transport toward a greater use of intermodal transport through, for example, motorways of the sea, in light of the evidence that the former makes a significant contribution to increased CO2 emissions. However, although there is a general perception that sea transport is environmentally preferable to road transport, recent studies are beginning to question this assumption. Moreover, little research has been conducted to quantify environmental aspects and incorporate them into the decision-making processes involved in the modal shift. This study first reviews the existing literature to examine the extent to which environmental aspects are relevant in the modal choice in the case of short sea shipping and motorways of the sea. Related to this, the study also evaluates the role that different agents may play in making decisions about choice of mode, taking into consideration environmental aspects. Secondly, we use the values the European Commission provides to calculate external costs for the Marco Polo freight transport project proposals (call 2013 to estimate the environmental costs for several routes (a total of 72, comparing the use of road haulage with the intermodal option that incorporates the Spanish motorways of the sea. The results of this comparative analysis show that the intermodal option is not always the best choice in environmental terms. Consequently, the traditional environmental argument to justify this alternative must be used carefully.

  12. Reconstruction of the sea surface elevation from the analysis of the data collected by a wave radar system

    Science.gov (United States)

    Ludeno, Giovanni; Soldovieri, Francesco; Serafino, Francesco; Lugni, Claudio; Fucile, Fabio; Bulian, Gabriele

    2016-04-01

    X-band radar system is able to provide information about direction and intensity of the sea surface currents and dominant waves in a range of few kilometers from the observation point (up to 3 nautical miles). This capability, together with their flexibility and low cost, makes these devices useful tools for the sea monitoring either coastal or off-shore area. The data collected from wave radar system can be analyzed by using the inversion strategy presented in [1,2] to obtain the estimation of the following sea parameters: peak wave direction; peak period; peak wavelength; significant wave height; sea surface current and bathymetry. The estimation of the significant wave height represents a limitation of the wave radar system because of the radar backscatter is not directly related to the sea surface elevation. In fact, in the last period, substantial research has been carried out to estimate significant wave height from radar images either with or without calibration using in-situ measurements. In this work, we will present two alternative approaches for the reconstruction of the sea surface elevation from wave radar images. In particular, the first approach is based on the basis of an approximated version of the modulation transfer function (MTF) tuned from a series of numerical simulation, following the line of[3]. The second approach is based on the inversion of radar images using a direct regularised least square technique. Assuming a linearised model for the tilt modulation, the sea elevation has been reconstructed as a least square fitting of the radar imaging data[4]. References [1]F. Serafino, C. Lugni, and F. Soldovieri, "A novel strategy for the surface current determination from marine X-band radar data," IEEE Geosci.Remote Sens. Lett., vol. 7, no. 2, pp. 231-235, Apr. 2010. [2]Ludeno, G., Brandini, C., Lugni, C., Arturi, D., Natale, A., Soldovieri, F., Serafino, F. (2014). Remocean System for the Detection of the Reflected Waves from the Costa

  13. The analysis of Last Interglacial (MIS 5e) relative sea-level indicators: Reconstructing sea-level in a warmer world

    NARCIS (Netherlands)

    Rovere, A.; Raymo, M.E.; Vacchi, M.; Lorscheid, T; Stocchi, P.; Gómez-Pujolf, L.; Harris, D.L.; Casella, E.; O'Leary, M.J.; Hearty, P.J.

    2016-01-01

    The Last Interglacial (MIS 5e, 128–116 ka) is among the most studied past periods in Earth's history. The climate at that time was warmer than today, primarily due to different orbital conditions, with smaller ice sheets and higher sea-level. Field evidence for MIS 5e sea-level was reported from

  14. Characterization and expression analysis of a complement component gene in sea cucumber ( Apostichopus japonicus)

    Science.gov (United States)

    Chen, Zhong; Zhou, Zunchun; Yang, Aifu; Dong, Ying; Guan, Xiaoyan; Jiang, Bei; Wang, Bai

    2015-12-01

    The complement system plays a crucial role in the innate immune system of animals. It can be activated by distinct yet overlapping classical, alternative and lectin pathways. In the alternative pathway, complement factor B (Bf) serves as the catalytic subunit of complement component 3 (C3) convertase, which plays the central role among three activation pathways. In this study, the Bf gene in sea cucumber ( Apostichopus japonicus), termed AjBf, was obtained by rapid amplification of cDNA ends (RACE). The full-length cDNA of AjBf was 3231 bp in length barring the poly (A) tail. It contained an open reading frame (ORF) of 2742 bp encoding 913 amino acids, a 105 bp 5'-UTR (5'-terminal untranslated region) and a 384 bp 3'-UTR. AjBf was a mosaic protein with six CCP (complement control protein) domains, a VWA (von Willebrand factor A) domain, and a serine protease domain. The deduced molecular weight of AjBf protein was 101 kDa. Quantitative real time PCR (qRT-PCR) analysis indicated that the expression level of AjBf in A. japonicus was obviously higher at larval stage than that at embryonic stage. Expression detection in different tissues showed that AjBf expressed higher in coelomocytes than in other four tissues. In addation, AjBf expression in different tissues was induced significantly after LPS or PolyI:C challenge. These results indicated that AjBf plays an important role in immune responses to pathogen infection.

  15. An Ensemble Analysis of Antarctic Glacial Isostatic Adjustment and Sea Level

    Science.gov (United States)

    Lecavalier, B.; Tarasov, L.

    2016-12-01

    Inferences of past ice sheet evolution that lack any uncertainty assessment (implicit or explicit), have little value. A developing technique for explicit uncertainty quantification of glacial systems is Bayesian calibration of models against large observational data-sets (Tarasov et al., 2012). The foundation for a Bayesian calibration of a 3D glacial systems model (GSM) for Antarctica has recently been completed (Briggs et al., 2013; 2014; Briggs and Tarasov, 2013). Bayesian calibration thoroughly samples model uncertainties against fits to observational data to generate a probability distribution for the Antarctic Ice Sheet deglaciation with explicit and well-defined confidence intervals. To have validity as a complete inference of past ice sheet evolution, Bayesian calibration requires a model that "brackets reality".Past work has shown the GSM to have likely inadequate range of grounding line migration in certain sectors as well as persistent ice thickness biases in topographically complex regions (Briggs et al., 2014). To advance towards full calibration, these deficiencies are being addressed through a number of model developments. The grounding line scheme has been revised (Pollard and DeConto, 2012), the horizontal resolution is increased to 20 km, and boundary conditions are updated. The basal drag representation now includes the sub-grid treatment of the thermo-mechanical impacts of high basal roughness. Parametric uncertainties in basal drag for regions that are presently marine have been re-evaluated. The impact of past changes in ocean temperature on sub ice shelf melt is explicitly incorporated in the current ocean forcing parametric scheme. Uncertainties in earth rheology are also probed to robustly quantify uncertainties affiliated with glacial isostatic adjustment. The ensemble analysis of the Antarctic glacial system provides dynamical bounds on past and present Antarctica glacial isostatic adjustment and sea level contributions. This research

  16. Optimization of water resources management using SWOT analysis: the case of Zakynthos Island, Ionian Sea, Greece

    Science.gov (United States)

    Diamantopoulou, P.; Voudouris, K.

    2008-03-01

    Zakynthos, an island of 408 km2 in the Ionian Sea, is completely dependent on its groundwater resources for fulfilling the demands of the water supplies. The use of groundwater resources has become particularly intensive during the last decades because of the intense urbanization, the tourist development and the irrigated land expansion that took place. The main aquifers are developed in limestones (karstic), sandstones of neogene deposits (confined) and alluvial deposits (phreatic). This paper focuses on the assessment of their hydrogeological characteristics and the groundwater quality. For this investigation, groundwater level measurements, drilling data, pumping tests and chemical analyses of groundwater samples were used. The average annual consumption that is abstracted from the aquifer systems, is 4.9 × 106 m3 year-1. The exploitable groundwater reserves were estimated to be 3.3 × 106 m3 year-1. In the last decades, the total abstractions exceed the natural recharge, due to the tourist development; therefore the aquifer systems are not used safely. The results of chemical analyses showed a deterioration of the groundwater quality. According to the analyses the shallow alluvial aquifer and the confined aquifer are polluted by nitrates at concentrations in excess of 25 mg L-1. High sulphate concentrations might be related to the dissolution of gypsum. Seawater intrusion phenomena are recorded in coastal parts of aquifer systems. The increased Cl- concentrations in karstic aquifer indicate signs of overexploitation. Strengths, weaknesses, opportunities and threats (SWOT) analysis was applied in order to evaluate the SWOT of the groundwater resources. Moreover, some recommendations are made to assist the rational management that aim at improving the sustainability of the groundwater resources of Zakynthos Island.

  17. Global cost analysis on adaptation to sea level rise based on RCP/SSP scenarios

    Science.gov (United States)

    Kumano, N.; Tamura, M.; Yotsukuri, M.; Kuwahara, Y.; Yokoki, H.

    2017-12-01

    Low-lying areas are the most vulnerable to sea level rise (SLR) due to climate change in the future. In order to adapt to SLR, it is necessary to decide whether to retreat from vulnerable areas or to install dykes to protect them from inundation. Therefore, cost- analysis of adaptation using coastal dykes is one of the most essential issues in the context of climate change and its countermeasures. However, few studies have globally evaluated the future costs of adaptation in coastal areas. This study tries to globally analyze the cost of adaptation in coastal areas. First, global distributions of projected inundation impacts induced by SLR including astronomical high tide were assessed. Economic damage was estimated on the basis of the econometric relationship between past hydrological disasters, affected population, and per capita GDP using CRED's EM-DAT database. Second, the cost of adaptation was also determined using the cost database and future scenarios. The authors have built a cost database for installed coastal dykes worldwide and applied it to estimating the future cost of adaptation. The unit costs of dyke construction will increase with socio-economic scenario (SSP) such as per capita GDP. Length of vulnerable coastline is calculated by identifying inundation areas using ETOPO1. Future cost was obtained by multiplying the length of vulnerable coastline and the unit cost of dyke construction. Third, the effectiveness of dyke construction was estimated by comparing cases with and without adaptation.As a result, it was found that incremental adaptation cost is lower than economic damage in the cases of SSP1 and SSP3 under RCP scenario, while the cost of adaptation depends on the durability of the coastal dykes.

  18. An Analysis of Sea Turtle Demographics along Maryland Shores, 1990-2015

    Science.gov (United States)

    Rhoades, C.; Driscoll, C.; Weschler, A.; Crawford, M.

    2016-02-01

    The Maryland Department of Natural Resources Marine Mammal and Sea Turtle Stranding Program was established in the fall of 1990, and responded to their first documented sea turtle stranding in the summer of 1991. Over this twenty-five year period, 575 dead strandings of sea turtles have been documented. This research project analyzes all sea turtle case files from the initiation of this program for the following parameters in order to associate stranding trends; species, location (Atlantic Ocean v. Chesapeake Bay), seasonality, length, relative age, condition code, and sex. Further understanding these protected species will assist in conserving their coastal ecosystem and securing these species a sustainable future. Along with the parameters previously discussed, this study will also consider the factors contributing to the animal's death, if determined. These potential causes incorporate natural causes such as disease, and also detail instances of human interaction, including: dredge takes, commercial or recreational fishing interaction, power plant entrainment, propeller and boat strikes. A total of approximately 17% of the dead stranded sea turtles Maryland Department of Natural Resources responded to were found to have some proven aspect of human interaction. Lastly, in order to further investigate for human interaction stomach contents were analyzed for plastics or other forms of marine debris. This project will contribute to MD DNR and NOAA's mission, goals, and objectives by further understanding these protected species in order to conserve their coastal ecosystem and secure these species a sustainable future.

  19. Grain size analysis data collected by sediment corer and sediment grabber casts in the Chukchi sea from 1986-08-29 to 1987-10-07 (NODC Accession 9500158)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Grain size analysis data were collected by using sediment corer and sediment graber casts in the Chukchi Sea and NW Coast of Alaska by the Chukchi Sea. Data were...

  20. Understanding extreme sea levels for broad-scale coastal impact and adaptation analysis

    Science.gov (United States)

    Wahl, T.; Haigh, I. D.; Nicholls, R. J.; Arns, A.; Dangendorf, S.; Hinkel, J.; Slangen, A. B. A.

    2017-07-01

    One of the main consequences of mean sea level rise (SLR) on human settlements is an increase in flood risk due to an increase in the intensity and frequency of extreme sea levels (ESL). While substantial research efforts are directed towards quantifying projections and uncertainties of future global and regional SLR, corresponding uncertainties in contemporary ESL have not been assessed and projections are limited. Here we quantify, for the first time at global scale, the uncertainties in present-day ESL estimates, which have by default been ignored in broad-scale sea-level rise impact assessments to date. ESL uncertainties exceed those from global SLR projections and, assuming that we meet the Paris agreement goals, the projected SLR itself by the end of the century in many regions. Both uncertainties in SLR projections and ESL estimates need to be understood and combined to fully assess potential impacts and adaptation needs.

  1. Analysis of Arctic Sea ice coverage in 2012 using multi-source scatterometer data

    Science.gov (United States)

    Zhai, M.

    2013-12-01

    Arctic sea ice extent, regarded as an indicator of climate change, has been declining for the past few decades and reached the lowest ice extent in satellite record during the summer of 2012. Scatterometers can be used in sea ice identification, due to its ability to measure the backscatter characteristics of surface coverage. Thus, daily scatterometer data can be used in Arctic sea ice monitoring. In this paper, we compared the similarity and difference of three different scatterometer datasets, including ASCAT(METOP-A/B Advanced scatterometer) data, OSCAT(Oceansat-2 scatterometer)data and China's HY-2 scatterometer data, and then evaluated their performance in Artic sea ice investigation. We also constructed the sea ice coverage time series in 2012 using different scatterometer data and analyzed its temporal and spatial variation. Preliminary Results show that the maximum extent was set on 19 March, 2012. Cracks started to appear in Arctic sea ice coverage near New Siberian Islands on 18,May. Later, melt process accelerates in July and August. The northeast passage is not open until late August. On 18 September, the extent reached the minimum level and the refreezing process began. The duration of melting season is slightly shorter than the average level over the period of 1978 to 2012(ERS-1/2 scattermeter and Quickscat scatterometer data are used as supplementary records). The record low extent is likely resulted from (1)Arctic dipole pressure pattern, bringing in warm southerly winds and enhancing arctic ice discharge in Fram Strait and (2)relatively warm conditions over the Arctic areas.

  2. Dissolved organic nitrogen dynamics in the North Sea: A time series analysis (1995-2005)

    Science.gov (United States)

    Van Engeland, T.; Soetaert, K.; Knuijt, A.; Laane, R. W. P. M.; Middelburg, J. J.

    2010-09-01

    Dissolved organic nitrogen (DON) dynamics in the North Sea was explored by means of long-term time series of nitrogen parameters from the Dutch national monitoring program. Generally, the data quality was good with little missing data points. Different imputation methods were used to verify the robustness of the patterns against these missing data. No long-term trends in DON concentrations were found over the sampling period (1995-2005). Inter-annual variability in the different time series showed both common and station-specific behavior. The stations could be divided into two regions, based on absolute concentrations and the dominant times scales of variability. Average DON concentrations were 11 μmol l -1 in the coastal region and 5 μmol l -1 in the open sea. Organic fractions of total dissolved nitrogen (TDN) averaged 38 and 71% in the coastal zone and open sea, respectively, but increased over time due to decreasing dissolved inorganic nitrogen (DIN) concentrations. In both regions intra-annual variability dominated over inter-annual variability, but DON variation in the open sea was markedly shifted towards shorter time scales relative to coastal stations. In the coastal zone a consistent seasonal DON cycle existed with high values in spring-summer and low values in autumn-winter. In the open sea seasonality was weak. A marked shift in the seasonality was found at the Dogger Bank, with DON accumulation towards summer and low values in winter prior to 1999, and accumulation in spring and decline throughout summer after 1999. This study clearly shows that DON is a dynamic actor in the North Sea and should be monitored systematically to enable us to understand fully the functioning of this ecosystem.

  3. Uncertainty Quantification and Sensitivity Analysis in the CICE v5.1 Sea Ice Model

    Science.gov (United States)

    Urrego-Blanco, J. R.; Urban, N. M.

    2015-12-01

    Changes in the high latitude climate system have the potential to affect global climate through feedbacks with the atmosphere and connections with mid latitudes. Sea ice and climate models used to understand these changes have uncertainties that need to be characterized and quantified. In this work we characterize parametric uncertainty in Los Alamos Sea Ice model (CICE) and quantify the sensitivity of sea ice area, extent and volume with respect to uncertainty in about 40 individual model parameters. Unlike common sensitivity analyses conducted in previous studies where parameters are varied one-at-a-time, this study uses a global variance-based approach in which Sobol sequences are used to efficiently sample the full 40-dimensional parameter space. This approach requires a very large number of model evaluations, which are expensive to run. A more computationally efficient approach is implemented by training and cross-validating a surrogate (emulator) of the sea ice model with model output from 400 model runs. The emulator is used to make predictions of sea ice extent, area, and volume at several model configurations, which are then used to compute the Sobol sensitivity indices of the 40 parameters. A ranking based on the sensitivity indices indicates that model output is most sensitive to snow parameters such as conductivity and grain size, and the drainage of melt ponds. The main effects and interactions among the most influential parameters are also estimated by a non-parametric regression technique based on generalized additive models. It is recommended research to be prioritized towards more accurately determining these most influential parameters values by observational studies or by improving existing parameterizations in the sea ice model.

  4. The Impact of Sea Level Rise on Developing Countries: A Comparative Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Dasgupta, S. [World Bank, Washington, DC (United States)

    2008-07-01

    Sea-level rise (SLR) due to climate change is a serious global threat: The scientific evidence is now overwhelming. In this paper, Geographic Information System software has been used to overlay the best available, spatially-disaggregated global data on land, population, agriculture, urban extent, wetlands, and GDP, to assess the consequences of continued SLR for 84 coastal developing countries. Estimates suggest that even a one-meter rise in sea level in coastal countries of the developing world would submerge 194,000 square kilometers of land area, and turn at least 56 million people into environmental refugees. At the country level results are extremely skewed.

  5. The Impact of Sea Level Rise on Developing Countries: A Comparative Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Dasgupta, Susmita (World Bank, Washington, DC (United States))

    2008-07-01

    Sea-level rise (SLR) due to climate change is a serious global threat: The scientific evidence is now overwhelming. In this paper, Geographic Information System software has been used to overlay the best available, spatially-disaggregated global data on land, population, agriculture, urban extent, wetlands, and GDP, to assess the consequences of continued SLR for 84 coastal developing countries. Estimates suggest that even a one-meter rise in sea level in coastal countries of the developing world would submerge 194,000 square kilometers of land area, and turn at least 56 million people into environmental refugees. At the country level results are extremely skewed

  6. Complementary biomarker-based methods for characterising Arctic sea ice conditions: A case study comparison between multivariate analysis and the PIP25 index

    Science.gov (United States)

    Köseoğlu, Denizcan; Belt, Simon T.; Smik, Lukas; Yao, Haoyi; Panieri, Giuliana; Knies, Jochen

    2018-02-01

    The discovery of IP25 as a qualitative biomarker proxy for Arctic sea ice and subsequent introduction of the so-called PIP25 index for semi-quantitative descriptions of sea ice conditions has significantly advanced our understanding of long-term paleo Arctic sea ice conditions over the past decade. We investigated the potential for classification tree (CT) models to provide a further approach to paleo Arctic sea ice reconstruction through analysis of a suite of highly branched isoprenoid (HBI) biomarkers in ca. 200 surface sediments from the Barents Sea. Four CT models constructed using different HBI assemblages revealed IP25 and an HBI triene as the most appropriate classifiers of sea ice conditions, achieving a >90% cross-validated classification rate. Additionally, lower model performance for locations in the Marginal Ice Zone (MIZ) highlighted difficulties in characterisation of this climatically-sensitive region. CT model classification and semi-quantitative PIP25-derived estimates of spring sea ice concentration (SpSIC) for four downcore records from the region were consistent, although agreement between proxy and satellite/observational records was weaker for a core from the west Svalbard margin, likely due to the highly variable sea ice conditions. The automatic selection of appropriate biomarkers for description of sea ice conditions, quantitative model assessment, and insensitivity to the c-factor used in the calculation of the PIP25 index are key attributes of the CT approach, and we provide an initial comparative assessment between these potentially complementary methods. The CT model should be capable of generating longer-term temporal shifts in sea ice conditions for the climatically sensitive Barents Sea.

  7. Expanding research capabilities with sea ice climate records for analysis of long-term climate change and short-term variability

    Science.gov (United States)

    Scott, D. J.; Meier, W. N.

    2008-12-01

    Recent sea ice analysis is leading to predictions of a sea ice-free summertime in the Arctic within 20 years, or even sooner. Sea ice topics, such as concentration, extent, motion, and age, are predominately studied using satellite data. At the National Snow and Ice Data Center (NSIDC), passive microwave sea ice data sets provide timely assessments of seasonal-scale variability as well as consistent long-term climate data records. Such data sets are crucial to understanding changes and assessing their impacts. Noticeable impacts of changing sea ice conditions on native cultures and wildlife in the Arctic region are now being documented. With continued deterioration in Arctic sea ice, global economic impacts will be seen as new shipping routes open. NSIDC is at the forefront of making climate data records available to address the changes in sea ice and its global impacts. By focusing on integrated data sets, NSIDC leads the way by broadening the studies of sea ice beyond the traditional cryospheric community.

  8. Foulant analysis of hollow fine fiber (HFF) membranes in Red Sea SWRO plants using membrane punch autopsy (MPA)

    KAUST Repository

    Green, Troy N.

    2017-06-12

    Membrane punch autopsy (MPA) is a procedure for quantitative foulant analysis of hollow fine fiber (HFF) permeators. In the past, quantitative autopsies of membranes were restricted to spiral wound. This procedure was developed at SWCC laboratories and tested on permeators of two commercial Red Sea reverse osmosis plants. For membrane autopsies, stainless steel hollow bore picks were penetrated to membrane cores and fibers extracted for foulant analysis. Quantitative analysis of extracted materials contained inorganic and organic foulants including bacteria. Fourier transform infrared spectroscopy analysis confirmed the presence of organic fouling functional groups and scanning electron microscopy with energy dispersive X-ray spectroscopy in the presence of diatoms and silica most likely not from particulate sand. API analysis revealed the presence of Shewanella and two Vibrio microbial species confirmed by 16S rDNA sequence library. It was observed that fouling content of HFF cellulose triacetate (CTA) membranes were more than 800 times than polyamide spiral wound membranes.

  9. Technological and profitable analysis of airlifting in deep sea mining systems

    NARCIS (Netherlands)

    Ma, W.; van Rhee, C.; Schott, D.L.

    2017-01-01

    Airlifting technology utilized in deep-sea mining (DSM) industry was proposed in the 70s of last century, which was triggered by the discovery of vast amounts of mineral resources on the seabed. The objective of this paper is to assess the technological feasibility and profitability analyses in

  10. Dissolved organic nitrogen dynamics in the North Sea: A time series analysis (1995-2005)

    NARCIS (Netherlands)

    Van Engeland, T.; Soetaert, K.E.R.; Knuijt, A.; Laane, R.W.P.M.; Middelburg, J.J.

    2010-01-01

    Dissolved organic nitrogen (DON) dynamics in the North Sea was explored by means of long-term time series of nitrogen parameters from the Dutch national monitoring program. Generally, the data quality was good with little missing data points. Different imputation methods were used to verify the

  11. Cascade-sea : Computer Assisted Curriculum Analysis, Design & Evaluation for Science Education in Africa.

    NARCIS (Netherlands)

    McKenney, Susan; van den Akker, Jan; Maribe, Robert; Gustafson, Kent; Nieveen, Nienke; Plomp, Tjeerd

    1999-01-01

    The CASCADE-SEA program aims to support curriculum development within the context of secondary level science and mathematics education in sub-Saharan Africa. This project focuses on the iterative design of a computer-based curriculum development support system for the creation of classroom

  12. Size analysis of planktic foraminifera from the Arabian Sea: Marine Micropaleontology,

    NARCIS (Netherlands)

    Peeters, F.J.C.; Ivanova, E.; Conan, S.M.H.; Brummer, G.J.A.; Ganssen, G.M.; Troelstra, S.R.; van Weering, T.; van Hinte, J.E.

    1999-01-01

    Planktic foraminiferal faunas from different environments in the Arabian Sea were size fractionated using 14 sieves with meshes between 100 and 710 μm, to assess the effect of the sieve mesh size cut off level on the faunal composition and to determine the size frequency distribution of individual

  13. Analysis of extreme sea level along the east coast of India

    Digital Repository Service at National Institute of Oceanography (India)

    Unnikrishnan, A.S.; Sundar, D.; Blackman, D.

    the r-largest annual maximum method, the joint probability method (JPM) as well as the revised joint probability method (RJPM) was performed to estimate the return periods of extreme sea level. JPM gave an underestimate of levels for long return periods...

  14. Analysis of the competitive position of short sea shipping : Development of policy measures

    NARCIS (Netherlands)

    Peeters, C.; Verbeke, A.; Declercq, E.; Wijnolst, N.

    1995-01-01

    This study on the potentialof Short Sea Shipping (SSS) in Europe, with a focus on four corridors, consists of four parts. In the first part (Chapter I) the existing intra-European SSS-traffic is identified and analyzed for each relevant category of goods and transport corridor. In the second part

  15. Hookworm infection, anaemia and genetic variability of the New Zealand sea lion.

    Science.gov (United States)

    Acevedo-Whitehouse, Karina; Petetti, Laura; Duignan, Padraig; Castinel, Aurelie

    2009-10-07

    Hookworms are intestinal blood-feeding nematodes that parasitize and cause high levels of mortality in a wide range of mammals, including otariid pinnipeds. Recently, an empirical study showed that inbreeding (assessed by individual measures of multi-locus heterozygosity) is associated with hookworm-related mortality of California sea lions. If inbreeding increases susceptibility to hookworms, effects would expectedly be stronger in small, fragmented populations. We tested this assumption in the New Zealand sea lion, a threatened otariid that has low levels of genetic variability and high hookworm infection rates. Using a panel of 22 microsatellites, we found that average allelic diversity (5.9) and mean heterozygosity (0.72) were higher than expected for a small population with restricted breeding, and we found no evidence of an association between genetic variability and hookworm resistance. However, similar to what was observed for the California sea lion, homozygosity at a single locus explained the occurrence of anaemia and thrombocytopenia in hookworm-infected pups (generalized linear model, F = 11.81, p < 0.001) and the effect was apparently driven by a particular allele (odds ratio = 34.95%; CI: 7.12-162.41; p < 0.00001). Our study offers further evidence that these haematophagus parasites exert selective pressure on otariid blood-clotting processes.

  16. Neutron activation analysis and scanning electron microscopy of phytoplankton in the coastal zone of the Crimea (Black sea)

    International Nuclear Information System (INIS)

    Nekhoroshkov, P.S.; Kravtsova, A.V.; Frontas'eva, M.V.; Tokarev, Yu.N.

    2014-01-01

    For the first time the concentrations of 45 elements in the coastal phytoplankton communities used as bioindicator of inorganic contamination of the Black Sea coastal area near Sevastopol, Ukraine, were determined by means of neutron activation analysis and scanning electron microscopy with energy dispersive spectrometer. Phytoplankton samples were collected by total tows of the plankton net with 35 μm pore size at 3 stations situated in polluted and relatively pristine water areas of the Sevastopol coastal zone during autumn period of the phytoplankton active growth. The concentration of Mg, Al, Sc, Ti, V, Mn, As, Rb, Ba, Th and Fe, Cr increases exponentially from relatively pristine station to more polluted station and 10 and 3 times greater, respectively, in the phytoplankton of the Sevastopol Bay. The rare-earth elements have relatively the same concentration values of about 1 μg/g and tend to accumulate in the phytoplankton from the polluted station in the Sevastopol Bay. The obtained results are in good agreement with the elemental concentration data in the oceanic plankton, plankton communities from the White Sea and the Black Sea. Using energy-dispersive X-ray spectrometry the mineral particles of unknown origin and impurities of copper (0.42% by weight) in the phytoplankton at the polluted station and zinc (0.57% by weight) at the relatively pristine station were determined

  17. Downscaling of Open Coarse Precipitation Data through Spatial and Statistical Analysis, Integrating NDVI, NDWI, Elevation, and Distance from Sea

    Directory of Open Access Journals (Sweden)

    Hicham Ezzine

    2017-01-01

    Full Text Available This study aims to improve the statistical spatial downscaling of coarse precipitation (TRMM 3B43 product and also to explore its limitations in the Mediterranean area. It was carried out in Morocco and was based on an open dataset including four predictors (NDVI, NDWI, DEM, and distance from sea that explain TRMM 3B43 product. For this purpose, four groups of models were established based on different combinations of the four predictors, in order to compare from one side NDVI and NDWI based models and the other side stepwise with multiple regression. The models that have given rise to the best approximations and best fits were used to downscale TRMM 3B43 product. The resulting downscaled and calibrated precipitations were validated by independent RGS. Aside from that, the limitations of the proposed approach were assessed in five bioclimatic stages. Furthermore, the influence of the sea was analyzed in five classes of distance. The findings showed that the models built using NDVI and NDWI have a high correlation and therefore can be used to downscale precipitation. The integration of elevation and distance improved the correlation models. According to R2, RMSE, bias, and MAE, the study revealed that there is a great agreement between downscaled precipitations and RGS measurements. In addition, the analysis showed that the contribution of the variable (distance from sea is evident around the coastal area and decreases progressively. Likewise, the study demonstrated that the approach performs well in humid and arid bioclimatic stages compared to others.

  18. Monte Carlo analysis of an ODE Model of the Sea Urchin Endomesoderm Network

    Directory of Open Access Journals (Sweden)

    Klipp Edda

    2009-08-01

    Full Text Available Abstract Background Gene Regulatory Networks (GRNs control the differentiation, specification and function of cells at the genomic level. The levels of interactions within large GRNs are of enormous depth and complexity. Details about many GRNs are emerging, but in most cases it is unknown to what extent they control a given process, i.e. the grade of completeness is uncertain. This uncertainty stems from limited experimental data, which is the main bottleneck for creating detailed dynamical models of cellular processes. Parameter estimation for each node is often infeasible for very large GRNs. We propose a method, based on random parameter estimations through Monte-Carlo simulations to measure completeness grades of GRNs. Results We developed a heuristic to assess the completeness of large GRNs, using ODE simulations under different conditions and randomly sampled parameter sets to detect parameter-invariant effects of perturbations. To test this heuristic, we constructed the first ODE model of the whole sea urchin endomesoderm GRN, one of the best studied large GRNs. We find that nearly 48% of the parameter-invariant effects correspond with experimental data, which is 65% of the expected optimal agreement obtained from a submodel for which kinetic parameters were estimated and used for simulations. Randomized versions of the model reproduce only 23.5% of the experimental data. Conclusion The method described in this paper enables an evaluation of network topologies of GRNs without requiring any parameter values. The benefit of this method is exemplified in the first mathematical analysis of the complete Endomesoderm Network Model. The predictions we provide deliver candidate nodes in the network that are likely to be erroneous or miss unknown connections, which may need additional experiments to improve the network topology. This mathematical model can serve as a scaffold for detailed and more realistic models. We propose that our method can

  19. Algorithms for MDC-Based Multi-locus Phylogeny Inference

    Science.gov (United States)

    Yu, Yun; Warnow, Tandy; Nakhleh, Luay

    One of the criteria for inferring a species tree from a collection of gene trees, when gene tree incongruence is assumed to be due to incomplete lineage sorting (ILS), is minimize deep coalescence, or MDC. Exact algorithms for inferring the species tree from rooted, binary trees under MDC were recently introduced. Nevertheless, in phylogenetic analyses of biological data sets, estimated gene trees may differ from true gene trees, be incompletely resolved, and not necessarily rooted. In this paper, we propose new MDC formulations for the cases where the gene trees are unrooted/binary, rooted/non-binary, and unrooted/non-binary. Further, we prove structural theorems that allow us to extend the algorithms for the rooted/binary gene tree case to these cases in a straightforward manner. Finally, we study the performance of these methods in coalescent-based computer simulations.

  20. Comparison of multi-locus enzyme and protein gel electrophoresis ...

    African Journals Online (AJOL)

    The obtained data revealed that SDS-PAGE and esterase isozymes are more efficient in grouping isolates in their respective species while peroxidase and malate dehydrogenase isozyme has much limited resolution in organizing all isolates in their respective species-specific clusters. A low correlations was detected ...

  1. Multi-locus phylogeny and taxonomy of Exserohilum

    NARCIS (Netherlands)

    Hernandez Restrepo, Margarita Ines; Madrid, H.; Tan, Y.P.; da Cunha, K.C.; Gene, Josepa; Guarro, Josep; Crous, P.W.

    2018-01-01

    Exserohilum includes a number of plant pathogenic, saprobic and clinically relevant fungi. Some of these species are of great importance in human activities, but the genus has never been revised in a phylogenetic framework. In this study, we revise Exserohilum based on available ex-type cultures

  2. Phylogenetic relationships of Scomberomorus commerson using sequence analysis of the mtDNA D-loop region in the Persian Gulf, Oman Sea and Arabian Sea

    Directory of Open Access Journals (Sweden)

    Ana Mansourkiaei

    2016-04-01

    Full Text Available Abstract Narrow-barred Spanish mackerel, Scomberomorus commerson, is an epipelagic and migratory species of family Scombridae which have a significant role in terms of ecology and fishery. 100 samples were collected from the Persian Gulf, Oman Sea and Arabian Sea. Part of their dorsal fins was snipped and transferred to micro-tubes containing ethanol; then, DNAs were extracted and HRM-Real Time PCR was performed to designate representative specimens for sequencing. Phylogenetic relationships of S. commerson from Persian Gulf, Oman Sea and Arabian Sea were investigated using sequence data of mitochondrial DNA D-loop region. None clustered Neighbor Joining tree indicated the proximity amid S. commerson in four sites. As numbers demonstrated in sequence analyses of mitochondrial DNA D-Loop region a sublimely high degree of genetic similarity among S. commerson from the Persian Gulf and Oman Sea were perceived, thereafter, having one stock structure of S. commerson in four regions were proved, and this approximation can be merely justified by their migration process along the coasts of Oman Sea and Persian Gulf. Therefore, the assessment of distribution patterns of 20 haplotypes in the constructed phylogenetic tree using mtDNA D-Loop sequences ascertained that no significant clustering according to the sampling sites was concluded.

  3. Study on the use of neutron activation analysis within a new separation method in order to determine element traces in sea water

    International Nuclear Information System (INIS)

    Amman, K.

    1982-01-01

    Starting from the problematic situation of neutron activation analysis of sea salt it is outlined, that an early separation of disturbing nuclides of chief components will considerably increase the number of elements which can be determined by NAA of sea salt. Referring to this, a new separation method is presented which allows the selective separation of chief activities with the high decontamination factors required. For 21 elements limits of detection achieved by this method are compared with the average content of sea water. (orig.) [de

  4. A Change Oriented Extension of EOF Analysis Applied to the 1996-1997 AVHRR Sea Surface Temperature Data

    DEFF Research Database (Denmark)

    Nielsen, Allan Aasbjerg; Conradsen, Knut; Andersen, Ole Baltazar

    2002-01-01

    correlation analysis, and maximum autocorrelation factors (MAFs). The method described can be considered as an extension to EOF analysis that is specially tailored for change detection in spatial data since it first maximises differences in the data between two points in time and then maximises...... autocorrelation between neighbouring observations. The results show that the large scale ocean events associated with the El Nino/Southern Oscillation (ENSO) related changes are concentrated in the first SST MAF/MAD mode and the two first SSH MAF/MAD modes. The MAD/MAF analysis also revealed a spatially...... correlated structure in the Western Mediterranean Sea that turned out to be related to a strong semi-annual variation in the SST for 1997 which was difficult to resolve from a traditional principal component analysis....

  5. Comparative Morphometric Analysis of the Smallscaled Scorpionfish, Scorpaena Porcus (Scorpaenidae, Scorpaeniformes, from the Southern Coast of the Crimea and Eastern Part of the Adriatic Sea

    Directory of Open Access Journals (Sweden)

    Manilo L. G.

    2016-12-01

    Full Text Available Comparative analysis of morphometric characters of small-scaled scorpionfish from the Black Sea (near the southern coast of the Crimea and from the eastern part of the Adriatic Sea showed significant differences in males and females on thirteen plastic and three meristic characters. These differences may be due to unequal abiotic and biotic habitat conditions, and refer about the geographical variability of the species, indicating the presence of two different populations in the study area.

  6. Correlation and SVD Analysis of Anomalous Spring Precipitation in Northwest China and Sea Surface Temperature in Key Region in Recent 50 Years

    Institute of Scientific and Technical Information of China (English)

    2011-01-01

    [Objective] The aim was to study the relationship between spring precipitation anomaly in Northwest China and sea surface temperature anomaly (SSTA) in Key region in recent 50 years. [Method] Based on monthly average precipitation in Northwest China and global monthly sea surface temperature (SST) grid data, the effects of SSTA in equatorial central and eastern Pacific on spring precipitation in Northwest China were discussed by means of correlation and SVD analysis. [Result] For spring precipitation in Nor...

  7. Analysis of sea-level reconstruction techniques for the Arctic Ocean

    DEFF Research Database (Denmark)

    Svendsen, Peter Limkilde; Andersen, Ole Baltazar; Nielsen, Allan Aasbjerg

    Sea-level reconstructions spanning several decades have been examined in numerous studies for most of the world's ocean areas, where satellite missions such as TOPEX/Poseidon and Jason-1 and -2 have provided much-improved knowledge of variability and long-term changes in sea level. However......, these dedicated oceanographic missions are limited in coverage to between ±66° latitude, and satellite altimeter data at higher latitudes is of a substantially worse quality. Following the approach of Church et al. (2004), we apply a model based on empirical orthogonal functions (EOFs) to the Arctic Ocean......, constrained by tide gauge records. A major challenge for this area is the sparsity of both satellite and tide gauge data beyond what can be covered with interpolation, necessitating a time-variable model and consideration to data preprocessing, including selection of appropriate tide gauges. In order to have...

  8. Observation and analysis of tidal and residual current in the North Yellow Sea in the spring

    Science.gov (United States)

    Miao, Qingsheng; Yang, Jinkun; Yang, Yang; Wan, Fangfang; Yu, Jia

    2018-02-01

    In order to study the current characteristics of the North Yellow Sea (NYS), 4 moored ADCPs (Acoustic Doppler Current Profilers) were deployed and Current characteristics were analyzed based on the observations. Results show that tidal current is the dominant and M2 is the main constituent. Shallow water constituents are obvious in the near-shore area, and tidal current ellipses directions have relations with topography. Residual currents in the Bohai Strait point to the Bohai Sea interior and the magnitude have a connection with terrain. Residual current in south NYS can be divided into two layers, and energy of residual current only accounts for about 13% of the total energy. Barotropic eddy kinetic energy plays a major role and the average in NYS accounts for 87%, baroclinic mean kinetic energy is larger in north NYS, in other regions barotropic mean kinetic energy take the leading position.

  9. Sensitivity analysis of the model for estimation of the Adriatic sea turnover time using fallout 90Sr as a radioactive tracer

    International Nuclear Information System (INIS)

    Franic, Z.

    2005-01-01

    Reliable data on the turnover time of water in the Adriatic Sea (approximately 35000 cubic kilometres) is extremely important for any risk analysis involving various economic activities, tourism, etc. Water exchange through the Strait of Otranto between the Adriatic and the Ionian seas has been the subject of a series of experimental investigations and more recently, of some numerical studies, is extensively presented by Cushman-Roisin et al. [1]. The turnover time of the Adriatic sea water can be easily calculated from the data on water fluxes through the Strait by calculating annual water mass flowing through the Strait and dividing it by the total volume of the Adriatic sea. Literature data on the Adriatic Sea water turnover time range from minimal 0.7 to maximal 5.0 years. Using a model describing the rate of change of 9 0S r activity concentrations in the Adriatic Sea water by function minimisation to long-term experimental data, the turnover time for 9 0S r in the Adriatic was calculated to be 3.3±0.4 years. The uncertainty was estimated by Monte Carlo analysis. As 9 0S r is a reliable radiotracer for seawater, this value also reflects the sea water turnover time. Sensitivity analysis of the model, applied by varying critical parameters over their nominal values, showed that ±25% uncertainty in the estimation of the Adriatic sea water activity results in approximately ±10% change in 9 0S r mean residence time. On the other hand, a larger input of 9 0S r, either by fallout or water influx from the Ionian Sea may lead to a shorter mean residence time.Direct proportionality between 9 0S r input into the Adriatic sea and its mean residence time in the sea water suggests that 3.3 years is the upper limit of the Adriatic sea water turnover time. Namely, re-suspension from sediments could affect 9 0S r activity concentrations, acting as additional input, especially in the northern, relatively shallow part of the Adriatic.(author)

  10. New tools and paradigms for the analysis of sea spray aerosols by single particle mass spectrometry

    OpenAIRE

    Sultana, Camille M.

    2017-01-01

    Aerosols can influence the chemistry of the atmosphere as well as also impact global climate by directly scattering light and modifying cloud properties. Sea spray aerosols (SSA) are the second most abundant natural aerosol globally and have the potential to strongly influence atmospheric chemistry and scattering of solar radiation in marine regions. In this dissertation, an ATOFMS was utilized to characterize the chemistry of SSA, focusing on describing the mixing state of the population an...

  11. The Analysis Regarding the Building of a Hydraulic Power Plant on the Black Sea Shore

    Directory of Open Access Journals (Sweden)

    Gheorghe Samoilescu

    2013-09-01

    Full Text Available The present paper represents the result of a research project regarding the construction of a wave driven hydraulic plant that is going to be installed on the Black Sea shore in the area of the city of Constanta. Several phases were analyzed: numerical simulations for the micro plant – wave energy theory; finite element simulation – results and conclusions; generating the blueprint for the construction of the plant.

  12. By land, sea, or air? A comparative analysis of cartel smuggling strategies

    OpenAIRE

    Harney, Sean M.

    2017-01-01

    Approved for public release; distribution is unlimited Cartels are known for their innovative smuggling techniques, across land, sea, or air, which allow them to clandestinely transport drugs across any point of entry into the United States. With this in mind, it is worth asking: why do cartels choose a certain drug smuggling technique over another, which domain is more commonly used and potentially more successful, and what sorts of structural changes would it take to shift from one metho...

  13. A Mesoscale Model Analysis of Sea Fog Formation and Dissipation Near Kunsan Air Base

    Science.gov (United States)

    2012-03-01

    vapor YS Yellow Sea Z Zulu time xvii ACKNOWLEDGMENTS This process has been the most enjoyable, and at times, the...most daunting; however, I have a few people to thank for making it more of the former rather than the latter. Without this person I would not have...coordinated universal time (UTC) or Zulu time (Z), which is minus nine hours to Korean Standard Time (KST). For the period of interest to this

  14. Analysis of Organic Anionic Surfactants in Fine and Coarse Fractions of Freshly Emitted Sea Spray Aerosol

    Energy Technology Data Exchange (ETDEWEB)

    Cochran, Richard E.; Laskina, Olga; Jayarathne, Thilina; Laskin, Alexander; Laskin, Julia; Lin, Peng; Sultana, Camile M.; Lee, Christopher; Moore, Kathryn A.; Cappa, Christopher; Bertram, Timothy; Prather, Kimberly; Grassian, Vicki H.; Stone, Elizabeth

    2016-02-01

    The inclusion of organic compounds in freshly emitted sea spray aerosol (SSA) has been shown to be size-dependent, with an increasing organic fraction in smaller particles. Defining the molecular composition of sea spray aerosol has proven challenging, due to the mix of continental and background particles even in remote marine environments. Here we have used electrospray ionization-high resolution mass spectrometry in negative ion mode to identify organic compounds in nascent sea spray collected throughout a 25-day mesocosm experiment. Over 280 organic compounds from ten major homologous series were identified. These compounds were operationally defined as molecules containing a hydrophobic alkyl chain with a hydrophilic head group making them surface active. The most abundant class of molecules detected were saturated (C8–C24) and unsaturated (C12–C22) fatty acids. Fatty acid derivatives (including saturated oxo-fatty acids (C5–C18) and saturated hydroxy-fatty acids (C5–C18) were also identified. Interestingly, anthropogenic influences on SSA from the seawater were observed in the form of sulfate (C2–C7, C12–C17) and sulfonate (C16–C22) species. During the mesocosm, the distributions of molecules within each homologous series were observed to respond to variations among the levels of phytoplankton and bacteria in the seawater, indicating an important role of biological processes in determining the composition of SSA.

  15. Variability of mesoscale features in the Mediterranean Sea from XBT data analysis

    Directory of Open Access Journals (Sweden)

    G. Fusco

    2003-01-01

    Full Text Available During the period 1998–2000, the Mediterranean Forecasting System Pilot Project, aiming to build a forecasting system for the physical state of the sea, has been carried out. A ship-of-opportunity programme sampled the Mediterranean upper ocean thermal structure by means of eXpendable Bathy-Thermographs (XBTs, along seven tracks, from September 1999 to May 2000. The tracks were designed to detect some of the main circulation features, such as the stream of surface Atlantic water flowing from the Alboran Sea to the Eastern Levantine Basin. The cyclonic gyres in the Liguro-Provenal Basin, the southern Adriatic and Ionian Seas and the anticyclonic gyres in the Levantine Basin were also features to be detected. The monitoring system confirmed a long-term persistence of structures (at least during the entire observing period, which were previously thought to be transient features. In particular, in the Levantine Basin anticyclonic Shikmona and Ierapetra Gyres have been observed during the monitoring period. In order to identify the major changes in the thermal structures and the dynamical implications, the XBT data are compared with historical measurements collected in the 1980s and 1990s. The results indicate that some thermal features are being restored to the situation that existed in the 1980s, after the changes induced by the so-called "Eastern Mediterranean Transient". Key words. Oceanography: physical (eddies and mesoscale processes; general circulation; instruments and techniques

  16. The Analysis of Heavy Metal in Sea Water and Sediment from MuriaPeninsula Coastal Area by NAA Method

    International Nuclear Information System (INIS)

    TS, Susanna; Sukirno

    2000-01-01

    The analysis of heavy metal in sea water and sediment taken from Muriacoastal sites in Central Java has been carried out. This research aimed tosupport the EMSB and Ocean Radioecology programme. The sea water sample wasdried with electrical brazier till crystal form, and balanced. Whereas thesediment sample was cleaned, dried at opened air, powdered, screened andhomogenized. Irradiation of samples and standard were done for twelve hoursusing Lazy Susan facility, Kartini reactor with neutron flux of 5.85 x10 10 .n.cm -2 .s -1 . Comparative method of measurements was used foravoiding the effects of neutron flux parameters on the results. Using gammaspectrometer equipment with a Ge(Li) detector and multi channel analyzer with4096 channels, 7 elements were concealed in the sea water; i.e. Fe, Se, Co,Cr, Ce, Sm and Sc were detected, whereas in the sediment sample concealed 10elements were detected, i.e. Fe, Se, Co, Cr, As, Ce, Sm, Th, U and Sc. It wasfound that the elements concentrations in the sediment sample from Muria baywere higher than those elements concentrations in the sea water sample. Theconcentrations of Fe, Se, Co, Cr, Ce, Sm and Sc in the sediment sample fromMuria peninsula coastal area were Fe = 19.923 ± 2.162%, Se = 1.320 ±0.141 ppm, Co = 0.570 ± 0.066 ppm, Cr = 0.410 ± 0.031 ppm, As = 0.500± 0.043 ppm, Ce = 0.774 ± 0.210 ppm, Sm = 1.860 ± 0.210 ppm, Th1.930 ± 0.173 ppm, U = 0.663 ± 0.027 ppm, dan Sc = 0.190 ± 0.003ppm, whereas the concentration elements in the sea water sample were Fe 0.112± 0.007%, Se = 0.305 ± 0.008 ppm, Co = 0.047 ± 0.002 ppm, Cr 0.023± 0.001 ppm, Ce = 0.022 ± 0.001 ppm, Sm = 14 ± 0.8 ppb dan Sc = 2.4ppb, respectively. (author)

  17. Genome-wide analysis of the ATP-binding cassette (ABC) transporter gene family in sea lamprey and Japanese lamprey.

    Science.gov (United States)

    Ren, Jianfeng; Chung-Davidson, Yu-Wen; Yeh, Chu-Yin; Scott, Camille; Brown, Titus; Li, Weiming

    2015-06-06

    Lampreys are extant representatives of the jawless vertebrate lineage that diverged from jawed vertebrates around 500 million years ago. Lamprey genomes contain information crucial for understanding the evolution of gene families in vertebrates. The ATP-binding cassette (ABC) gene family is found from prokaryotes to eukaryotes. The recent availability of two lamprey draft genomes from sea lamprey Petromyzon marinus and Japanese lamprey Lethenteron japonicum presents an opportunity to infer early evolutionary events of ABC genes in vertebrates. We conducted a genome-wide survey of the ABC gene family in two lamprey draft genomes. A total of 37 ABC transporters were identified and classified into seven subfamilies; namely seven ABCA genes, 10 ABCB genes, 10 ABCC genes, three ABCD genes, one ABCE gene, three ABCF genes, and three ABCG genes. The ABCA subfamily has expanded from three genes in sea squirts, seven and nine in lampreys and zebrafish, to 13 and 16 in human and mouse. Conversely, the multiple copies of ABCB1-, ABCG1-, and ABCG2-like genes found in sea squirts have contracted in the other species examined. ABCB2 and ABCB3 seem to be new additions in gnathostomes (not in sea squirts or lampreys), which coincides with the emergence of the gnathostome-specific adaptive immune system. All the genes in the ABCD, ABCE and ABCF subfamilies were conserved and had undergone limited duplication and loss events. In the sea lamprey transcriptomes, the ABCE and ABCF gene subfamilies were ubiquitously and highly expressed in all tissues while the members in other gene subfamilies were differentially expressed. Thirteen more lamprey ABC transporter genes were identified in this study compared with a previous study. By concatenating the same gene sequences from the two lampreys, more full length sequences were obtained, which significantly improved both the assignment of gene names and the phylogenetic trees compared with a previous analysis using partial sequences. The ABC

  18. First Principles Analysis of Convection in the Earth's Mantle, Eustatic Sea Level and Earth Volume

    Science.gov (United States)

    Kinsland, G. L.

    2011-12-01

    Steady state convection (convection whereby heat leaving the mantle at the top is equal to the heat entering the mantle across the core mantle boundary and that created within the mantle) of the Earth's mantle is, to a very good approximation, both a constant mass and constant volume process. Mass or volume which moves to one place; e.g., an oceanic ridge; must be accompanied by mass or volume removed from another place. The location of removal, whether from underneath of an ocean or a continent, determines the relationship between oceanic ridge volume and eustatic sea level. If all of the volume entering a ridge were to come from under an oceanic basin then the size of the ridge would not affect eustatic sea level as it would be compensated by a lowering of the sea floor elsewhere. If the volume comes from under a continent then the hypsometry of the continent becomes important. Thus, eustatic sea level is not simply related to convection rate and oceanic ridge volume as posited by Hays and Pitman(1973). Non-steady state convection is still a constant mass process but is not a constant volume process. The mantle experiences a net gain of heat, warms and expands during periods of relatively slow convection (that being convection rate which is less than that necessary to transport incoming and internally created heat to the surface). Conversely, the mantle has a net loss of heat, cools and contracts during periods of relatively rapid convection. The Earth itself expands and contracts as the mantle does. During rapid convection more volume is delivered from the interior of the mantle to the Earth's ridge system than during slow convection. The integral of the difference of ridge system volume between fast and slow convection over a fast-slow convection cycle is a measure of the difference in volume of the mantle over a cycle. The magnitude of the Earth's volume expansion and contraction as calculated from published values for the volume of ocean ridges and is about

  19. Advanced SAR Interferometric Analysis to Support Geomorphological Interpretation of Slow-Moving Coastal Landslides (Malta, Mediterranean Sea

    Directory of Open Access Journals (Sweden)

    Matteo Mantovani

    2016-05-01

    Full Text Available An advanced SAR interferometric analysis has been combined with a methodology for the automatic classification of radar reflectors phase histories to interpret slope-failure kinematics and trend of displacements of slow-moving landslides. To accomplish this goal, the large dataset of radar images, acquired in more than 20 years by the two European Space Agency (ESA missions ERS-1/2 and ENVISAT, was exploited. The analysis was performed over the northern sector of Island of Malta (central Mediterranean Sea, where extensive landslides occur. The study was assisted by field surveys and with the analysis of existing thematic maps and landslide inventories. The outcomes allowed definition of a model capable of describing the geomorphological evolution of slow-moving landslides, providing a key for interpreting such phenomena that, due to their slowness, are usually scarcely investigated.

  20. Elements of seismic imaging and velocity analysis – Forward modeling and diffraction analysis of conventional seismic data from the North Sea

    DEFF Research Database (Denmark)

    Montazeri, Mahboubeh

    2018-01-01

    comprises important oil and gas reservoirs. By application of well-established conventional velocity analysis methods and high-quality diffraction imaging techniques, this study aims to increase the resolution and the image quality of the seismic data. In order to analyze seismic wave propagation......-outs and salt delineations, which can be extracted from the diffractions. The potential of diffraction imaging techniques was studied for 2D seismic stacked data from the North Sea. In this approach, the applied plane-wave destruction method was successful in order to suppress the reflections from the stacked....... This improved seismic imaging is demonstrated for a salt structure as well as for Overpressured Shale structures and the Top Chalk of the North Sea....

  1. Revealing discriminating power of the elements in edible sea salts: Line-intensity correlation analysis from laser-induced plasma emission spectra

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Yonghoon, E-mail: yhlee@mokpo.ac.kr [Department of Chemistry, Mokpo National University, Jeonnam 534-729 (Korea, Republic of); Ham, Kyung-Sik [Department of Food Engineering, Mokpo National University, Jeonnam 534-729 (Korea, Republic of); Han, Song-Hee [Division of Maritime Transportation System, Mokpo National Maritime University, Jeonnam 530-729 (Korea, Republic of); Yoo, Jonghyun, E-mail: jyoo@appliedspectra.com [Applied Spectra, Inc., 46665 Fremont Boulevard, Fremont, CA 94538 (United States); Jeong, Sungho [School of Mechatronics, Gwangju Institute of Science and Technology, Gwangju 500-712 (Korea, Republic of)

    2014-11-01

    We have investigated the discriminating power of the elements in edible sea salts using Laser-Induced Breakdown Spectroscopy (LIBS). For the ten different sea salts from South Korea, China, Japan, France, Mexico and New Zealand, LIBS spectra were recorded in the spectral range between 190 and 1040 nm, identifying the presence of Na, Cl, K, Ca, Mg, Li, Sr, Al, Si, Ti, Fe, C, O, N, and H. Intensity correlation analysis of the observed emission lines provided a valuable insight into the discriminating power of the different elements in the sea salts. The correlation analysis suggests that the elements with independent discrimination power can be categorized into three groups; those that represent dissolved ions in seawater (K, Li, and Mg), those that are associated with calcified particles (Ca and Sr), and those that are present in soils contained in the sea salts (Al, Si, Ti, and Fe). Classification models using a few emission lines selected based on the results from intensity correlation analysis and full broadband LIBS spectra were developed based on Principal Component Analysis (PCA) and Partial Least Squares-Discriminant Analysis (PLS-DA) and their performances were compared. Our results indicate that effective combination of a few emission lines can provide a dependable model for discriminating the edible sea salts and the performance is not much degraded from that based on the full broadband spectra. This can be rationalized by the intensity correlation results. - Highlights: • Broadband LIBS spectra of various edible sea salts were obtained. • Intensity correlation of emission lines of the elements in edible sea salts was analyzed. • The elements were categorized into three groups with independent discriminating power. • The effective combination of a few lines can provide dependable classification models.

  2. Coastal Flooding in Florida's Big Bend Region with Application to Sea Level Rise Based on Synthetic Storms Analysis

    Directory of Open Access Journals (Sweden)

    Scott C. Hagen Peter Bacopoulos

    2012-01-01

    Full Text Available Flooding is examined by comparing maximum envelopes of water against the 0.2% (= 1-in-500-year return-period flooding surface generated as part of revising the Federal Emergency Management Agency¡¦s flood insurance rate maps for Franklin, Wakulla, and Jefferson counties in Florida¡¦s Big Bend Region. The analysis condenses the number of storms to a small fraction of the original 159 used in production. The analysis is performed by assessing which synthetic storms contributed to inundation extent (the extent of inundation into the floodplain, coverage (the overall surface area of the inundated floodplain and the spatially variable 0.2% flooding surface. The results are interpreted in terms of storm attributes (pressure deficit, radius to maximum winds, translation speed, storm heading, and landfall location and the physical processes occurring within the natural system (storms surge and waves; both are contextualized against existing and new hurricane scales. The approach identifies what types of storms and storm attributes lead to what types of inundation, as measured in terms of extent and coverage, in Florida¡¦s Big Bend Region and provides a basis in the identification of a select subset of synthetic storms for studying the impact of sea level rise. The sea level rise application provides a clear contrast between a dynamic approach versus that of a static approach.

  3. Time-Series Analysis of Remotely-Sensed SeaWiFS Chlorophyll in River-Influenced Coastal Regions

    Science.gov (United States)

    Acker, James G.; McMahon, Erin; Shen, Suhung; Hearty, Thomas; Casey, Nancy

    2009-01-01

    The availability of a nearly-continuous record of remotely-sensed chlorophyll a data (chl a) from the Sea-viewing Wide Field-of-view Sensor (SeaWiFS) mission, now longer than ten years, enables examination of time-series trends for multiple global locations. Innovative data analysis technology available on the World Wide Web facilitates such analyses. In coastal regions influenced by river outflows, chl a is not always indicative of actual trends in phytoplankton chlorophyll due to the interference of colored dissolved organic matter and suspended sediments; significant chl a timeseries trends for coastal regions influenced by river outflows may nonetheless be indicative of important alterations of the hydrologic and coastal environment. Chl a time-series analysis of nine marine regions influenced by river outflows demonstrates the simplicity and usefulness of this technique. The analyses indicate that coastal time-series are significantly influenced by unusual flood events. Major river systems in regions with relatively low human impact did not exhibit significant trends. Most river systems with demonstrated human impact exhibited significant negative trends, with the noteworthy exception of the Pearl River in China, which has a positive trend.

  4. Fluid-Dynamics of Underwater Flight in Sea Butterflies: Analysis using Tomographic PIV

    Science.gov (United States)

    Adhikari, D.; Murphy, D. W.; Webster, D. R.; Yen, J.

    2014-11-01

    Sea butterflies, Limacina helicina, swim in sea water with a pair of gelatinous ``wings'' (or parapodia). Their unique propulsion mechanism has been hypothesized to consist of a combination of drag-based propulsion (rowing) and lift-based propulsion (flapping). Drag-based propulsion utilizes maximum drag on the wings during power stroke, followed by minimum drag during recovery stroke. Lift-based propulsion, in contrast, utilizes a pressure difference between the top and bottom of the wings. We present the 3D kinematics of a free-swimming sea butterfly and its induced volumetric velocity field using tomographic PIV. Both upstroke and downstroke motions propel the animal (1 - 3 mm) upward in a sawtooth-like trajectory with average speed of 5 - 15 mm/s (Re = 5 - 45) and roll the calcareous shell forwards-and-backwards at 4 - 5 Hz. The rolling motion effectively positions the wings such that they stroke downward during both the power and recovery strokes, hence inducing upward motion during both phases. A clap-and-fling mechanism is observed at the beginning of the flapping cycle. As the wings come into contact, the velocity of the organism is 2 mm/s. During fling motion, high (unsteady) lift causes the organism velocity to reach 35 mm/s. Separation vortices are observed during the fling motion, and vortices with an opposite sense of rotation form closer to the base of the wing due to the upward translation of the organism. The separation vortices shed into the wake, as the organism translates upward, in the form of separate vortex pairs.

  5. Spatial and Temporal Analysis of Sea Surface Salinity Using Satellite Imagery in Gulf of Mexico

    Science.gov (United States)

    Rajabi, S.; Hasanlou, M.; Safari, A. R.

    2017-09-01

    The recent development of satellite sea surface salinity (SSS) observations has enabled us to analyse SSS variations with high spatiotemporal resolution. In this regards, The Level3-version4 data observed by Aquarius are used to examine the variability of SSS in Gulf of Mexico for the 2012-2014 time periods. The highest SSS value occurred in April 2013 with the value of 36.72 psu while the lowest value (35.91 psu) was observed in July 2014. Based on the monthly distribution maps which will be demonstrated in the literature, it was observed that east part of the region has lower salinity values than the west part for all months mainly because of the currents which originate from low saline waters of the Caribbean Sea and furthermore the eastward currents like loop current. Also the minimum amounts of salinity occur in coastal waters where the river runoffs make fresh the high saline waters. Our next goal here is to study the patterns of sea surface temperature (SST), chlorophyll-a (CHLa) and fresh water flux (FWF) and examine the contributions of them to SSS variations. So by computing correlation coefficients, the values obtained for SST, FWF and CHLa are 0.7, 0.22 and 0.01 respectively which indicated high correlation of SST on SSS variations. Also by considering the spatial distribution based on the annual means, it found that there is a relationship between the SSS, SST, CHLa and the latitude in the study region which can be interpreted by developing a mathematical model.

  6. North Sea oil, the UK economy and macroeconomic adjustment -an overview, theoretical and simulation analysis

    International Nuclear Information System (INIS)

    Harvie, Charles

    1992-01-01

    The discovery and production of oil from the UK sector of the North Sea has had, and will continue to have for some time yet, an important impact upon developments in that economy. This paper is concerned with identifying the major characteristics of this oil production, and the macroeconomic developments which have arisen in the UK during its period of production. A theoretical framework, incorporating these characteristics, is developed, to identify the contribution of oil production and price changes to these as well as future developments. (author)

  7. Sea-Boson Analysis of the Infinite-U Hubbard Model

    OpenAIRE

    Setlur, Girish S.

    2004-01-01

    By expanding the projection operator in powers of the density fluctuations, we conjecture a hamiltonian purely quadratic in the sea-bosons that reproduces the right spin and charge velocities and exponent for the $ U = \\infty $ case in one dimension known from the work of Schulz. Then we argue that by simply promoting wavenumbers to wave vectors we are able to study the two dimensional case. We find that the quasiparticle residue takes a value $ Z_{F} = 0.79 $ close to half-filling where it i...

  8. ANALYSIS OF LOW-FREQUENCY OSCILLATIONS FOR THE SOUTH CHINA SEA SUMMER MONSOON IN 1998

    Institute of Scientific and Technical Information of China (English)

    徐国强; 朱乾根

    2003-01-01

    With NCEP/NCAR reanalysis daily data and SST for 1998, the paper investigates the features of summer monsoon low-frequency oscillation (LFO) over the South China Sea (SCS). Results show that SCS summer monsoon onset is enhanced because of its LFO. Low-frequency (LF) low-level convergence (divergence) region of SCS is in the LF positive (negative) rainfall area. LFO of the SCS region migrates from south to north in the meridian and from west to east in zonal direction. LF divergence of SCS is vertically compensating to each other between high and low level.

  9. Analysis of Complex Marine Hazards on the Romanian Black Sea Shelf Using Combined Geophysical Methods

    Science.gov (United States)

    Samoila, I. V.; Radulescu, V.; Moise, G.; Diaconu, A.; Radulescu, R.

    2017-12-01

    Combined geophysical acquisition technologies including High Resolution 2D Seismic (HR2D), Multi-Beam Echo-Sounding (MBES), Sub-Bottom Profiling (SBP) and Magnetometry were used in the Western Black Sea (offshore Romania) to identify possible geohazards, such as gas escaping surface sediments and tectonic hazard areas up to 1 km below the seafloor. The National Project was funded by the Research and Innovation Ministry of Romania, and has taken place over 1.5 years with the purpose of creating risk maps for the surveyed pilot area. Using an array of geophysical methods and creating a workflow to identify geohazard susceptible areas on the Romanian Black Sea continental shelf is important and beneficial for future research projects. The SBP and MBES data show disturbed areas that can be interpreted as gas escapes on the surface of the seafloor, and some escapes were confirmed on the HR2D profiles. Shallow gas indicators like gas chimneys and acoustic blanking are usually delimited by vertical, sub-vertical and/or quasi-horizontal faults that mark possible hazard areas on shallow sedimentary sections. Interpreted seismic profiles show three main markers: one delimiting the Pliocene-Quaternary boundary and two for the Miocene (Upper and Lower). Vertical and quasi-horizontal faults are characteristic for the Upper Miocene, while the Lower Miocene has NW-SE horizontal faults. Faults and possible hazard areas were marked on seismic sections and were further correlated with the MBES, SBP, Magnetometry and previously recorded data, such as earthquake epicenters scattered offshore in the Western Black Sea. The main fault systems likely to cause those earthquakes also aid the migration of gas if the faults are not sealed. We observed that the gas escapes were correlated with faults described on the recent seismic profiles. Mapping hazard areas will have an important contribution to better understand the recent evolution of the Western Black Sea basin but also for projecting

  10. Instrumental neutron activation analysis of the spatial distribution of uranium, thorium and rare earth elements of surficial sediments from Black sea coast nearby Istanbul

    International Nuclear Information System (INIS)

    Akyuz, T; Bolcal, C.; Akyuz, S.; Mukhamedshina, N.M.; Mirsagatova, A.A

    2006-01-01

    Full text: The Black Sea is an inland sea between south-eastern Europe and Asia minor. It is the largest anoxic marine basin in the word and connected to the Mediterranean Sea by the Bosporus and the Sea of Marmara, to the Sea of Azov by the Strait of Kerch. One of the most useful approaches to long-term monitoring of aquatic systems is the analysis of marine sediments. In this study the abundance of uranium, thorium and some rare earth elements was analysed in surface sediments of the Southern part of the Black Sea using instrumental neutron activation analysis. The spatial distribution patterns of the elements studied were investigated. The surficial sediment samples (0-4 cm) were collected during 1999-2005, from 18 sampling stations of the Turkish Coast of the Black Sea, by using a Lenz Bottom Sampler and were deposited into plastic bags. The samples were dried at 40 degrees Celcius for 24 hours, crushed and homogenised prior to the analysis and were irradiated simultaneously with reference materials at a fission spectra neutron flux of the density of 5.10 1 3 cm - 2.s - 1 (WWR-SM) nuclear reactor of Institute of Nuclear Physics, Tashkent, Uzbekistan. The gamma-spectra were measured in a gamma-spectrometer. A linear regression correlation test was performed to investigate the correlation between the elemental concentrations of our sediment samples. Correlation analysis revealed close relationships between Th and U (r=0.82), Th and La (r=0.87), Th and Ce (r=0.89). In nature, rare earth elements are often associated to thorium, thus the results indicate that Th and Lanthanides have a natural origin. The mean values of thorium (8.38) to uranium (3.80) is found to be Th/U= 2.20

  11. Revised South China Sea spreading history based on macrostructure analysis of IODP Expedition 349 core samples and geophysical data

    Science.gov (United States)

    Sun, Z.; Ding, W.; Zhao, X.; Qiu, N.; Lin, J.; Li, C.

    2017-12-01

    In Internaltional Ocean Discovery Program (IODP) Expedition 349, four sites were drilled and cored successfully in the South China Sea (SCS). Three of them are close to the central spreading ridge (Sites U1431, U1433 and U1434), and one (Site U1435) is located on an outer rise,,providingsignificant information on the spreading history of the SCS.In order to constrain the spreading historymore accurately with the core results, we analyzed the identifiable macrostructures (over 300 fractures, veins and slickensides)from all the consolidated samples of these four drill sites. Then we made a retrograde reconstruction of the SCS spreading history with the constraints of the estimated fractures and veins, post-spreading volcanism,seismic interpretation, as well as free-air gravity and magnetic anomaly and topography analysis. Our study indicates that the spreading of the SCS experienced at least one ridge jump event and two events of ridge orientation and spreading direction adjustment, which mademagnetic anomaly orientation, ridge positionand facture zone directionskeep changing in the South China Sea. During the last spreading stage, the spreading direction was north-southward but lasted for a very short time period. The oceanic crust is wider in the eastern SCS and tapers out toward west.Due to the subductionof SCS beneath the Philippine Sea plate, the seafloor began to develop new fractures:the NWW-to EW-trending R' shear faults and the NE-trending P faultsbecame dominant faults and controlled the eruption of post-drift volcanism.

  12. Data-adaptive harmonic analysis and prediction of sea level change in North Atlantic region

    Science.gov (United States)

    Kondrashov, D. A.; Chekroun, M.

    2017-12-01

    This study aims to characterize North Atlantic sea level variability across the temporal and spatial scales. We apply recently developed data-adaptive Harmonic Decomposition (DAH) and Multilayer Stuart-Landau Models (MSLM) stochastic modeling techniques [Chekroun and Kondrashov, 2017] to monthly 1993-2017 dataset of Combined TOPEX/Poseidon, Jason-1 and Jason-2/OSTM altimetry fields over North Atlantic region. The key numerical feature of the DAH relies on the eigendecomposition of a matrix constructed from time-lagged spatial cross-correlations. In particular, eigenmodes form an orthogonal set of oscillating data-adaptive harmonic modes (DAHMs) that come in pairs and in exact phase quadrature for a given temporal frequency. Furthermore, the pairs of data-adaptive harmonic coefficients (DAHCs), obtained by projecting the dataset onto associated DAHMs, can be very efficiently modeled by a universal parametric family of simple nonlinear stochastic models - coupled Stuart-Landau oscillators stacked per frequency, and synchronized across different frequencies by the stochastic forcing. Despite the short record of altimetry dataset, developed DAH-MSLM model provides for skillful prediction of key dynamical and statistical features of sea level variability. References M. D. Chekroun and D. Kondrashov, Data-adaptive harmonic spectra and multilayer Stuart-Landau models. HAL preprint, 2017, https://hal.archives-ouvertes.fr/hal-01537797

  13. Isotope analysis of water trapped in fluid inclusions in deep sea corals

    Science.gov (United States)

    Vonhof, Hubert; Reijmer, John; Feenstra, Eline; Mienis, Furu

    2015-04-01

    Extant Lophelia pertusa deep sea coral specimens from the Loachev mound region in the North Atlantic Ocean contain water filled fluid inclusions in their skeleton. This fluid inclusion water was extracted with a crushing device, and its hydrogen and oxygen isotope ratios analysed. The resulting data span a wide range of isotope values which are remarkably different from the seawater isotope composition of the sites studied. Comparison with food source isotope signatures suggests that coral inclusion water contains a high, but variable proportion of metabolic water. The isotope composition of the inclusion water appears to vary with the position on the deep see coral reef, and shows a correlation with the stable isotope composition of the coral aragonite. This correlation seems to suggest that growth rate and other ecological factors play an important role in determining the isotope composition of fluids trapped in the coral skeleton, which can potentially be developed as a proxy for non-equilibrium isotope fractionation observed in the aragonite skeleton of many of the common deep sea coral species.

  14. Adaptation to Sea Level Rise: A Multidisciplinary Analysis for Ho Chi Minh City, Vietnam

    Science.gov (United States)

    Scussolini, Paolo; Tran, Thi Van Thu; Koks, Elco; Diaz-Loaiza, Andres; Ho, Phi Long; Lasage, Ralph

    2017-12-01

    One of the most critical impacts of sea level rise is that flooding suffered by ever larger settlements in tropical deltas will increase. Here we look at Ho Chi Minh City, Vietnam, and quantify the threats that coastal floods pose to safety and to the economy. For this, we produce flood maps through hydrodynamic modeling and, by combining these with data sets of exposure and vulnerability, we estimate two indicators of risk: the damage to assets and the number of potential casualties. We simulate current and future (2050 and 2100) flood risk using IPCC scenarios of sea level rise and socioeconomic change. We find that annual damage may grow by more than 1 order of magnitude, and potential casualties may grow 5-20-fold until the end of the century, in the absence of adaptation. Impacts depend strongly on the climate and socioeconomic scenarios considered. Next, we simulate the implementation of adaptation measures and calculate their effectiveness in reducing impacts. We find that a ring dike would protect the inner city but increase risk in more rural districts, whereas elevating areas at risk and dryproofing buildings will reduce impacts to the city as a whole. Most measures perform well from an economic standpoint. Combinations of measures seem to be the optimal solution and may address potential equity conflicts. Based on our results, we design possible adaptation pathways for Ho Chi Minh City for the coming decades; these can inform policy-making and strategic thinking.

  15. Performance analysis of coupled and uncoupled hydrodynamic and wave models in the northern Adriatic Sea

    Science.gov (United States)

    Busca, Claudia; Coluccelli, Alessandro; Valentini, Andrea; Benetazzo, Alvise; Bonaldo, Davide; Bortoluzzi, Giovanni; Carniel, Sandro; Falcieri, Francesco; Paccagnella, Tiziana; Ravaioli, Mariangela; Riminucci, Francesco; Sclavo, Mauro; Russo, Aniello

    2014-05-01

    The complex dynamics of the Adriatic Sea are the result of geographical position, orography and bathymetry, as well as rivers discharge and meteorological conditions that influence, more strongly, the shallow northern part. Such complexity requires a constant monitoring of marine conditions in order to support several activities (marine resources management, naval operations, emergency management, shipping, tourism, as well as scientific ones). Platforms, buoys and mooring located in Adriatic Sea supply almost continuously real time punctual information, which can be spatially extended, with some limitations, by drifters and remote sensing. Operational forecasting systems represent valid tools to provide a complete tridimensional coverage of the area, with a high spatial and temporal resolution. The Hydro-Meteo-Clima Service of the Emilia-Romagna Environmental Agency (ARPA-SIMC, Bologna, Italy) and the Dept. of Life and Environmental Sciences of Università Politecnica delle Marche (DISVA-UNIVPM, Ancona, Italy), in collaboration with the Institute of Marine Science of the National Research Council (ISMAR-CNR, Italy) operationally run several wave and hydrodynamic models on the Adriatic Sea. The main implementations are based on the Regional Ocean Modeling System (ROMS), the wave model Simulating WAves Nearshore (SWAN), and the coupling of the former two models in the Coupled Ocean-Atmosphere-Wave-Sediment Transport (COAWST) system. Horizontal resolutions of the different systems range from the 2 km of AdriaROMS to the 0.5 km of the recently implemented northern Adriatic COAWST. Forecasts are produced every day for the subsequent 72 hour with hourly resolution. All the systems compute the fluxes exchanged through the interface with the atmosphere from the numerical weather prediction system named COSMO-I7, an implementation for Italy of the Consortium for Small-scale Modeling (COSMO) model, at 7 km horizontal resolution. Considering the several operational

  16. Determination of iridium in the Bering Sea and Arctic Ocean seawaters by anion exchange preconcentration-neutron activation analysis

    International Nuclear Information System (INIS)

    Li Shihong; Mao Xueying; Chai Zhifang

    2004-01-01

    Anion exchange method is investigated to separate and enrich iridium in seawater by radiotracer 192 Ir. The adsorption of Ir in the resin increases with the decreasing acidity in the 0.05-1.2 mol/L HCl media, The recovery of iridium in pH=1.5 seawater reaches 89% by a single anion-exchange column. The polyethylene container of acidity of pH=1.5 are suitable for storing trace Ir in seawater. An anion exchange preconcentration-neutron activation analysis procedure is developed to determine iridium in seawaters sampled from the Bering Sea and Arctic Ocean at different depth. The reagent blank value of the whole procedures is (0.18-0.20) x 10 -12 g Ir. The iridium concentrations in the Bering Sea and Arctic Ocean seawater samples are (0.85-3.58) x 10 -12 g/L (0-3504 m) and (1.26-1.97) x 10 -12 g/L (25-1900 m), respectively

  17. Use of X-ray computed tomography in core analysis of tight North Sea Chalk. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Mogensen, K.; Stenby, E.H.

    1997-12-01

    This EFP-95 final report summarizes work performed at the Engineering Research Center (IVC-SEP) on the use of CT scanning in core analysis of tight core material from the North Sea. In this work, CT scanning has been applied to chalk material from Danish North Sea oil reservoirs. Results indicate that CT is fast and reliable for prediction of porosity. Typical errors lie within 2-3%. Calculation of fluid saturations requires considerable care from the experimentalists. Saturating a core ought to be performed by pulling vacuum to avoid trapped air bubbles. These bubbles may be produced after subsequent water and gas flooding, thereby ruining the mass balance calculations. Results performed at Stanford University show that if these simple precautions are taken, fluid saturations calculated from CT scanning are generally very accurate. Moreover, it appears that contrast agents need not be added to either phase. Regarding three-phase measurements the results are somewhat disappointing. Previous work using the dual-energy technique has indicated that the accuracy is less than satisfactory, due to an increased noise level at the low-energy setting. More work needs to be done in the future to develop the necessary expertise. The image analysis of the residual oil saturation after a gas flood can be simplified if water is assumed to be immobile during the injection. In that case, the resulting prediction of residual oil saturation is in excellent agreement with measured values. The general conclusion is that CT scanning holds a great potential as an assisting tool in modern core analysis, despite its limitations and the numerous implementation-related problems encountered during this work. (au) EFP-95. 57 refs.

  18. Sea urchin neural alpha2 tubulin gene: isolation and promoter analysis.

    Science.gov (United States)

    Costa, S; Ragusa, M A; Drago, G; Casano, C; Alaimo, G; Guida, N; Gianguzza, F

    2004-04-02

    Expression of Talpha2 gene, during sea urchin Paracentrotus lividus development, is spatially and temporally regulated. In order to characterize this gene, we isolated the relevant genomic sequences and scanned the isolated 5'-flanking region in searching for cis-regulatory elements required for proper expression. Gel mobility shift and footprinting assays, as well as reporter gene (CAT and beta-gal) expression assays, were used to address cis-regulatory elements involved in regulation. Here we report that an upstream 5'-flanking fragment of PlTalpha2 gene drives temporal expression of reporter genes congruent with that of endogenous Talpha2 gene. The fragment contains cis-elements able to bind nuclear proteins from the gastrula stage (at which the Talpha2 gene is expressed) whose sequences could be consistent with the consensus sequences for transcription factors present in data bank.

  19. Numerical Analysis of Surge Phenomena, Currents, and Pollution Transport in the Sea of Azov

    Science.gov (United States)

    Ivanov, V. A.; Shul'ga, T. Ya.

    2018-04-01

    Dynamic processes and features of transformation of pollution in the Sea of Azov, caused by the action of a real wind and atmospheric pressure in the presence of stationary currents, are studied using a three-dimensional nonlinear hydrodynamic model. On the basis of numerical calculations, conclusions are reached about the influence of the velocities of stationary background currents on maximal deviations and the velocities of nonstationary currents generated by wind fields in the SKIRON model. It is shown that the combined effect of the constant wind and wind in the SKIRON atmospheric model leads to a significant expansion of the polluted area and to a longer dispersion time compared to the effects of solely stationary currents.

  20. Analysis of the strength of sea gas pipelines of positive buoyancy conditioned by glaciation

    Science.gov (United States)

    Malkov, Venyamin; Kurbatova, Galina; Ermolaeva, Nadezhda; Malkova, Yulia; Petrukhin, Ruslan

    2018-05-01

    A technique for estimating the stress state of a gas pipeline laid along the seabed in northern latitudes in the presence of glaciation is proposed. It is assumed that the pipeline lies on the bottom of the seabed, but under certain conditions on the some part of the pipeline a glaciation is formed and the gas pipeline section in the place of glaciation can come off the ground due to the positive buoyancy of the ice. Calculation of additional stresses caused by bending of the pipeline is of practical interest for strength evaluation. The gas pipeline is a two-layer cylindrical shell of circular cross section. The inner layer is made of high-strength steel, the outer layer is made of reinforced ferroconcrete. The proposed methodology for calculating the gas pipeline for strength is based on the equations of the theory of shells. The procedure takes into account the effect of internal gas pressure, external pressure of sea water, the weight of two-layer gas pipeline and the weight of the ice layer. The lifting force created by the displaced fluid and the positive buoyancy of the ice is also taken into account. It is significant that the listed loads cause only two types of deformation of the gas pipeline: axisymmetric and antisymmetric. The interaction of the pipeline with the ground as an elastic foundation is not considered. The main objective of the research is to establish the fact of separation of part of the pipeline from the ground. The method of calculations of stresses and deformations occurring in a model sea gas pipeline is presented.

  1. Thawed chilled Barents Sea cod fillets in modified atmosphere packaging-application of multivariate data analysis to select key parameters in good manufacturing practice

    DEFF Research Database (Denmark)

    Bøknæs, Niels; Jensen, K.N.; Guldager, H.S.

    2002-01-01

    The purpose of the present study was to select key parameters in good manufacturing practice for production of thawed chilled modified atmosphere packed (MAP) cod (Gadus morhua) fillets. The effect of frozen storage temperature (-20 and -30 C), frozen storage period (3, 6, 9 and 12 mo) and chill...... storage periods up to 21 d at 2 C were evaluated for thawed MAP Barents Sea cod fillets. Sensory, chemical, microbiological and physical quality attributes were evaluated and multivariate data analysis (principal component analysis and partial least- squares regression) applied for identification of key...... storage was low for thawed MAP Barents Sea cod and this fish raw material seemed the more appropriate for production of thawed chilled MAP products. Frozen storage inactivation of the spoilage bacteria of Photobacterium phosphorcum was modest in Barnets Sea cod, possibly due to high trimethylamine oxide...

  2. Haplotype association analysis of human disease traits using genotype data of unrelated individuals

    DEFF Research Database (Denmark)

    Tan, Qihua; Christiansen, Lene; Christensen, Kaare

    2005-01-01

    unphased multi-locus genotype data, ranging from the early approach by the simple gene-counting method to the recent work using the generalized linear model. However, these methods are either confined to case – control design or unable to yield unbiased point and interval estimates of haplotype effects....... Based on the popular logistic regression model, we present a new approach for haplotype association analysis of human disease traits. Using haplotype-based parameterization, our model infers the effects of specific haplotypes (point estimation) and constructs confidence interval for the risks...... on the well-known logistic regression model is a useful tool for haplotype association analysis of human disease traits....

  3. Reconstruction of deglacial sea surface temperature in the tropical Pacific from selective analysis of a fossil coral

    Energy Technology Data Exchange (ETDEWEB)

    Allison, N.; Finch, A.A.; Tudhope, A.W.; Newville, M.; Sutton, S.R.; Ellam, R.M. (St Andrews); (Edinburgh); (Scottish); (UC); (St Andrews)

    2010-07-13

    The Sr/Ca of coral skeletons demonstrates potential as an indicator of sea surface temperatures (SSTs). However, the glacial-interglacial SST ranges predicted from Sr/Ca of fossil corals are usually higher than from other marine proxies. We observed infilling of secondary aragonite, characterized by high Sr/Ca ratios, along intraskeletal pores of a fossil coral from Papua New Guinea that grew during the penultimate deglaciation (130 {+-} 2 ka). Selective microanalysis of unaltered areas of the fossil coral indicates that SSTs at {approx}130 ka were {le} 1 C cooler than at present in contrast with bulk measurements (combining infilled and unaltered areas) which indicate a difference of 6-7 C. The analysis of unaltered areas of fossil skeletons by microprobe techniques may offer a route to more accurate reconstruction of past SSTs.

  4. Neutron activation analysis determination of trace elements in suspended particulate material and in central Thyrrenian sea sediments

    International Nuclear Information System (INIS)

    Madaro, M.; Moauro, R.; Boniforti, R.

    1985-01-01

    Neutron activation analysis and gamma-spectrometry have been applied to the instrumental determination of 26 elements (As, Au, Ca, Ce, Co, Cr, Cs, Eu, Fe, Hf, Hg, La, Lu, Mn, Rb, Sb, Sc, Se, Sm, Ta, Tb, Th, W, Yb, Zn, Zr) in samples of suspended particulate matter and sediments collected in the stretch of Tyrrhenian Sea between the Volturno River mouth and the Cape of Circeo. Some of these elements have particular importance because they can be toxic to the organisms or can be used as tracers in the aquatic environment of radioisotopes generated in activation or fission processes. Results show that some elements, not constituting particular crystal lattices, are more concentrated in particulate matter than in sediments. Such results agree with the hypothesis, supported also by others, that particulate matter acts as a scavenger with respect to most microelements, because of both biological and physico-chemical phenomena

  5. Antibiotics in the coastal environment of the Hailing Bay region, South China Sea: Spatial distribution, source analysis and ecological risks.

    Science.gov (United States)

    Chen, Hui; Liu, Shan; Xu, Xiang-Rong; Zhou, Guang-Jie; Liu, Shuang-Shuang; Yue, Wei-Zhong; Sun, Kai-Feng; Ying, Guang-Guo

    2015-06-15

    In this study, the occurrence and spatial distribution of 38 antibiotics in surface water and sediment samples of the Hailing Bay region, South China Sea, were investigated. Twenty-one, 16 and 15 of 38 antibiotics were detected with the concentrations ranging from antibiotics in the water phase were correlated positively with chemical oxygen demand and nitrate. The source analysis indicated that untreated domestic sewage was the primary source of antibiotics in the study region. Fluoroquinolones showed strong sorption capacity onto sediments due to their high pseudo-partitioning coefficients. Risk assessment indicated that oxytetracycline, norfloxacin and erythromycin-H2O posed high risks to aquatic organisms. Copyright © 2015 Elsevier Ltd. All rights reserved.

  6. Neutron activation analysis for environmental trace element research determination of elemental composition of sediments in the Sea of Galillee, Israel

    Energy Technology Data Exchange (ETDEWEB)

    Lavi, N; Ne` eman, E; Brenner, S; Butenko, V [Tel Aviv Univ. (Israel). Medical School

    1996-12-01

    The aims of this work were to: a) demonstrate the effectiveness of instrumental neutron activation analysis for determining the background concentrations of trace elements in the sediments collected from the Sea of Gallile. b) determine the advantage factors for epithermal neutron irradiation. c) determine the contribution of silicon to the total {sup 28}Al activity by the {sup 28}Si(n,p){sup 28}Al reaction. c) check the validity of the method by determining the elemental content of U.S. NBS Standard Reference Material SRM-1633a (fly ash). d) calculate the average enrichment factors for the elements in sediments . e) determine the concentrations of the artificial radionuclides {sup 134}Cs, {sup 137}Cs and the naturally occurring radionuclides {sup 40}K, {sup 226}Ra and {sup 232}Th (authors).

  7. Characterization and phylogenetic analysis of lectin gene cDNA isolated from sea cucumber ( Apostichopus japonicus) body wall

    Science.gov (United States)

    Xue, Zhuang; Li, Hui; Liu, Yang; Zhou, Wei; Sun, Jing; Wang, Xiuli

    2017-12-01

    As a `living fossil' of species origin and `rich treasure' of food and nutrition development, sea cucumber has received a lot of attentions from researchers. The cDNA library construction and EST sequencing of blood had been conducted previously in our lab. The bioinformatic analysis provided a gene fragment which is highly homologous with the genes of lectin family, named AjL ( Apostichopus japonicus lectin). To characterize and determine the phylogeny of AjL genes in early evolution, we isolated a full-length cDNA of lectin gene from the body wall of A. japonicus. The open reading frame of this gene contained 489 bp and encoded a 163 amino acids secretory protein being homologous to lectins of mammals and aquatic organisms. The deduced protein included a lectin-like domain. SDS-PAGE analysis showed that AjL migrated as a specific band (about 36.09 kDa under reducing), and agglutinated against rabbit red blood cells. AjL was similar to chain A of CEL-IV in space structure. We predicted that AjL may play the same role of CEL-IV. Our results suggested that more than one lectin gene functioned in sea cucumber and most of other species, which was fused by uncertain sequences during the evolution and encoded different proteins with diverse functions. Our findings provided the insights into the function and characteristics of lectin genes invertebrates. The results will also be helpful for the identification and structural, functional, and evolutionary analyses of lectin genes.

  8. Comparative proteome analysis of cryopreserved flagella and head plasma membrane proteins from sea bream spermatozoa: effect of antifreeze proteins.

    Science.gov (United States)

    Zilli, Loredana; Beirão, José; Schiavone, Roberta; Herraez, Maria Paz; Gnoni, Antonio; Vilella, Sebastiano

    2014-01-01

    Cryopreservation induces injuries to fish spermatozoa that in turn affect sperm quality in terms of fertilization ability, motility, DNA and protein integrity and larval survival. To reduce the loss of sperm quality due to freezing-thawing, it is necessary to improve these procedures. In the present study we investigated the ability of two antifreeze proteins (AFPI and AFPIII) to reduce the loss of quality of sea bream spermatozoa due to cryopreservation. To do so, we compared viability, motility, straight-line velocity and curvilinear velocity of fresh and (AFPs)-cryopreserved spermatozoa. AFPIII addition to cryopreservation medium improved viability, motility and straight-line velocity with respect to DMSO or DMSO plus AFPI. To clarify the molecular mechanism(s) underlying these findings, the protein profile of two different cryopreserved sperm domains, flagella and head plasma membranes, was analysed. The protein profiles differed between fresh and frozen-thawed semen and results of the image analysis demonstrated that, after cryopreservation, out of 270 proteins 12 were decreased and 7 were increased in isolated flagella, and out of 150 proteins 6 showed a significant decrease and 4 showed a significant increase in head membranes. Mass spectrometry analysis identified 6 proteins (4 from isolated flagella and 2 present both in flagella and head plasma membranes) within the protein spots affected by the freezing-thawing procedure. 3 out of 4 proteins from isolated flagella were involved in the sperm bioenergetic system. Our results indicate that the ability of AFPIII to protect sea bream sperm quality can be, at least in part, ascribed to reducing changes in the sperm protein profile occurring during the freezing-thawing procedure. Our results clearly demonstrated that AFPIII addition to cryopreservation medium improved the protection against freezing respect to DMSO or DMSO plus AFPI. In addition we propose specific proteins of spermatozoa as markers related to

  9. Analysis of P- and S-wave VSP (vertical seismic profile) data from the Salton Sea Geothermal Field

    Energy Technology Data Exchange (ETDEWEB)

    Daley, T.M.

    1987-09-01

    To understand any geophysical data, geologic information is necessary. This thesis will begin with a summary of the geology of the Salton Trough region and the Salton Sea Geothermal Field (SSGF). The information available from the SSSDP will also be summarized. After the geologic summary, the design of the VSP will be discussed, including acquisition equipment and procedures. The data processing procedures and software used will be discussed as a separate section. Processing procedures will also be described at various times in the thesis where more specialized procedures are used. Data analysis makes up the bulk of the thesis and it is divided into a number of sections detailing the basic VSP interpretation, the anisotropy analysis and the fracture detection and orientation analysis. A combined interpretation of the results, with probable geologic causes for observed events, is presented as a separate section from the data analysis. Finally, a summary of results for each of the goals stated above will be given. The reader should note that a large volume of data were collected and various display methods were used (from the standard wiggle-trace to three-component hodographs). Much of these data are left in the appendices with important or representative figures given in the body of the thesis. Also given in the appendices are listings of FORTRAN programs developed in conjunction with the thesis work. 46 refs., 63 figs., 12 tabs.

  10. Analysis of monthly variability of thermocline in the South China Sea

    Science.gov (United States)

    Peng, Hanbang; Pan, Aijun; Zheng, Quan'an; Hu, Jianyu

    2018-03-01

    This study analyzes monthly variability of thermocline and its mechanism in the South China Sea (SCS). The study is based on 51-year (1960-2010) monthly seawater temperature and surface wind stress data from Simple Ocean Data Assimilation (SODA), together with heat flux, precipitation and evaporation data from the National Centers for Environmental Prediction (NCEP), the National Oceanic and Atmospheric Administration (NOAA) and the Woods Hole Oceanographic Institution, respectively. The results reveal that the upper boundary depth ( Z up), lower boundary depth ( Z low), thickness (Δ Z) and intensity ( T z ) of thermocline in the SCS show remarkable monthly variability. Being averaged for the deep basin of SCS, Z up deepens gradually from May to the following January and then shoals from February to May, while Z low varies little throughout the whole year. Further diagnostics indicates that the monthly variability of Z up is mainly caused by the buoyancy flux and wind stress curl. Using a linear method, the impacts of the buoyancy flux and wind stress curl on Z up can be quantitatively distinguished. The results suggest that Z up tends to deepen about 4.6 m when the buoyancy flux increases by 1×10 -5 kg/(m•s 3), while it shoals about 2.5 m when the wind stress curl strengthens by 1×10 -7 N/m³.

  11. Analysis of Exoelectrogenic Bacterial Communities Present in Different Brine Pools of the Red Sea

    KAUST Repository

    Ortiz Medina, Juan F.

    2014-05-01

    One contemporary issue experienced worldwide is the climate change due to the combustion of fossil fuels. Microbial Electrochemical Systems pose as an alternative for energy generation. In this technology, microorganisms are primarily responsible for electricity production. To improve the performance it is reasonable to think that bacteria from diverse environments, such as the brine pools of the Red Sea, can be utilized in these systems. Samples from three brine pools: Atlantis II, Valdivia, and Kebrit Deeps, were analyzed using Microbial Electrochemical Cells, with a poised potential at +0.2 V (vs. Ag/AgCl) and acetate as electron donor, to evaluate the exoelectrogenic activity by the present microorganisms. Only samples from Valdivia Deep were able to produce a noticeable current of 6 A/m2. This result, along with acetate consumption and changes on the redox activity measured with cyclic voltammetry, provides arguments to con rm the presence of exoelectrogenic bacteria in this environment. Further characterization using microscopy and molecular biology techniques is required, to obtain the most amount of information about these microorganisms and their potential use in bioelectrochemical technologies.

  12. Nuclear terrorism risk analysis using game theory. Case study of sea transportation of MOX fuel

    International Nuclear Information System (INIS)

    Nakatani, Eri; Tanaka, Satoru; Choi, Jor-Shan

    2010-01-01

    While considerable attention and resources have been directed towards improving nuclear security in Japan in response to the threat of nuclear terrorism, the transport of nuclear material raises concern by the public as indicated in the recent return of MOX fuel from Europe. This concern cannot be adequately addressed by the government through communications with the public because of the confidential nature of such transport. Also, it remains a challenge for adequately assessing the nuclear terrorism risk because many key parameters associated with such assessment cannot be derived from statistical data and reflect actors' intentions unlike assessment on natural disasters. This study proposes an assessment methodology which introduces game theory to deduce the correlations between those key parameters and can be used to analyze the nuclear terrorism risk, both quantitatively and qualitatively for the civilian use of nuclear power. Risk will be calculated by Monte Carlo methods based on probability distributions set for actors' utilities. A case-study of transporting the MOX fuel by sea is also included. (author)

  13. Mid-Piacensian mean annual sea surface temperature: an analysis for data-model comparisons

    Science.gov (United States)

    Dowsett, Harry J.; Robinson, Marci M.; Foley, Kevin M.; Stoll, Danielle K.

    2010-01-01

    Numerical models of the global climate system are the primary tools used to understand and project climate disruptions in the form of future global warming. The Pliocene has been identified as the closest, albeit imperfect, analog to climate conditions expected for the end of this century, making an independent data set of Pliocene conditions necessary for ground truthing model results. Because most climate model output is produced in the form ofmean annual conditions, we present a derivative of the USGS PRISM3 Global Climate Reconstruction which integrates multiple proxies of sea surface temperature (SST) into single surface temperature anomalies. We analyze temperature estimates from faunal and floral assemblage data,Mg/Ca values and alkenone unsaturation indices to arrive at a single mean annual SST anomaly (Pliocene minus modern) best describing each PRISM site, understanding that multiple proxies should not necessarily show concordance. The power of themultiple proxy approach lies within its diversity, as no two proxies measure the same environmental variable. This data set can be used to verify climate model output, to serve as a starting point for model inter-comparisons, and for quantifying uncertainty in Pliocene model prediction in perturbed physics ensembles.

  14. Salinity stratification of the Mediterranean Sea during the Messinian crisis: A first model analysis

    Science.gov (United States)

    Simon, Dirk; Meijer, Paul Th.

    2017-12-01

    In the late Miocene, a thick and complex sequence of evaporites was deposited in the Mediterranean Sea during an interruption of normal marine sedimentation known as the Messinian Salinity Crisis. Because the related deposits are mostly hidden from scrutiny in the deep basin, correlation between onshore and offshore sediments is difficult, hampering the development of a comprehensive stratigraphic model. Since the various facies correspond to different salinities of the basin waters, it would help to have physics-based understanding of the spatial distribution of salt concentration. Here, we focus on modelling salinity as a function of depth, i.e., on the stratification of the water column. A box model is set up that includes a simple representation of a haline overturning circulation and of mixing. It is forced by Atlantic exchange and evaporative loss and is used to systematically explore the degree of stratification that results under a wide range of combinations of parameter values. The model demonstrates counterintuitive behaviour close to the saturation of halite. For parameter values that may well be realistic for the Messinian, we show that a significantly stratified Mediterranean water column can be established. In this case, Atlantic connectivity is limited but may be closer to modern magnitudes than previously thought. In addition, a slowing of Mediterranean overturning and a larger deep-water formation region (both in comparison to the present day) are required. Under these conditions, we would expect a longer duration of halite deposition than currently considered in the MSC stratigraphic consensus model.

  15. Transcriptome analysis of tube foot and large scale marker discovery in sea cucumber, Apostichopus japonicus.

    Science.gov (United States)

    Zhou, Xiaoxu; Wang, Hongdi; Cui, Jun; Qiu, Xuemei; Chang, Yaqing; Wang, Xiuli

    2016-12-01

    Tube foot as one of the ambulacral appendages types in Aspidochirote holothurioids, is known for their functions in locomotion, feeding, chemoreception, light sensitivity and respiration. In this study, we explored the characteristic of transcriptome in the tube foot of sea cucumber (Apostichopus japonicus). Our results showed that among 390 unigenes which specifically expressed in the tube foot, 190 of them were annotated. Based on the assembly transcriptome, we found 219,860 SNPs from 34,749 unigenes, 97,683, 53,624, 27,767 and 40,786 were located in CDSs, 5'-UTRs, 3'-UTRs and non-CDS separately. Furthermore, 12,114 SSRs were detected from 7394 unigenes. Target genes of four specifically expressed miRNAs (miR-29a, miR-29b, miR-278-3p and miR-2005) in tube foot were also predicted based on the transcriptome, which contain immune-related factors (MBL, VLRA, AjC3, MyD88, CFB), skin pigmentation (MITF), candidate regeneration factor (TRP) and holothurians autolysis-related factor (CL). These results develop a relatively large number of molecular markers and transcriptome resources, and will provide a foundation for further analyses on the function and molecular mechanisms underlying A. japonicas tube foot. Copyright © 2016 Elsevier Inc. All rights reserved.

  16. Isolation, Phylogenetic Analysis and Antibiotic Activity Screening of Red Sea Sponge-Associated Actinobacteria

    KAUST Repository

    Yang, Chen

    2013-06-01

    Infectious disease has always been and will continue to be a heavy burden on human society worldwide. Terrestrial actinobacteria, notable as a source of antibiotics, have been well investigated in the past. In constrast, marine actinobacteria, especially sponge-associated species, have received much less attention and isolates are sparse. With the aim of studying and discovering novel marine actinobacteria, 11 different species of sponges were collected from the Central Red Sea in Saudi Arabia and cultured with three different types of media. 16S rRNA gene-sequencing revealed that among all 75 isolated bacterial strains 13 belonged to the order actinomycetales. These 13 actinomycetes fall into four different families and can be assigned to six different genera. Antibiotic activity tests using disc diffusion assay were performed against Gram-positive bacteria (Bacillus sp.), Gram-negative bacteria (Escherichia coli), fungi (Fusarium sp.) and West Nile virus NS3 protease. Nine strains presented different level of bioactivity against these pathogens. These findings provide evidence that actinomycetes are presented in marine sponges and that they have the potential to be good candidates in the search for new effective antibiotic, antifungal, and antiviral compounds.

  17. Screen and effect analysis of immunostimulants for sea cucumber, Apostichopus japonicus

    Science.gov (United States)

    Li, Jiye; Sun, Xiuqin; Zheng, Fengrong; Hao, Linhua

    2009-02-01

    Immunostimulants may improve disease resistance of aquaculture animals by promoting the nonspecific immunity response of the organisms. Five types of saccharides, including chitosan, yeast polysaccharide, burdock oligosaccharide, seaweed polysaccharide and lentinus edodes polysaccharide, were screened for potential use as immunostimulants by using spectrophotometry. The saccharides were injected into Apostichopus japonicus, a sea cucumber, and the lysozyme and superoxide dismutase (SOD) activities of the coelomic fluid and epidermal slime were monitored in six consecutive days. The results show that the lysozyme activity of the animal’s coelomic fluid was significantly stimulated on day 2, day 4 and day 6 after the injection of the saccharides ( P<0.05). The effects of chitosan and yeast polysaccharide were the most notable. The lysozyme activity of the epidermal slime was significantly increased by chitosana, yeast polysaccharide, seaweed polysaccharide, and burdock oligosaccharide on day 1 and day 2 after the injection ( P<0.05). The SOD activity of the coelomic fluid was significantly promoted by the saccharides on day 2 and day 4 post-injection ( P<0.05), while the SOD activity of the epidermal slime increased on day 2. These findings indicate that chitosan and yeast polysaccharide are the most effective immunostimulants and potential healthy anti-disease feedstuff for A. japonicus.

  18. Analysis on shock wave speed of water hammer of lifting pipes for deep-sea mining

    Science.gov (United States)

    Zhou, Zhi-jin; Yang, Ning; Wang, Zhao

    2013-04-01

    Water hammer occurs whenever the fluid velocity in vertical lifting pipe systems for deep-sea mining suddenly changes. In this work, the shock wave was proven to play an important role in changing pressures and periods, and mathematical and numerical modeling technology was presented for simulated transient pressure in the abnormal pump operation. As volume concentrations were taken into account of shock wave speed, the experiment results about the pressure-time history, discharge-time history and period for the lifting pipe system showed that: as its concentrations rose up, the maximum transient pressure went down, so did its discharges; when its volume concentrations increased gradually, the period numbers of pressure decay were getting less and less, and the corresponding shock wave speed decreased. These results have highly coincided with simulation results. The conclusions are important to design lifting transporting system to prevent water hammer in order to avoid potentially devastating consequences, such as damage to components and equipment and risks to personnel.

  19. Characterization and Analysis of Ionic Zinc Alloy Running a Potential Dynamic Polarization in Sea Water

    International Nuclear Information System (INIS)

    Zaifol Samsu; Muhammad Daud; Siti Radiah Mohd Kamarudin

    2011-01-01

    Zinc is an active metal. The reactive nature of zinc allows it to be used for sacrificial anode in cathodic protection systems by electrically coupled to the protected metal. Zinc is especially well suited for cathodic protection on ships that move between salt water and harbors in brackish rivers or estuaries (1). Zinc anodes also are used to protect ballast tank, heat exchangers, and many mechanical components on ships, coastal power plants, and similar structures. Cathodic protective by zinc is used in sea water, brackish water, fresh water, and in some soil. The relative reactivity of zinc and its ability to attract oxidation to itself makes it an efficient sacrificial anode in cathodic protection (2). For example, cathodic protection of a buried pipeline can be achieved by connecting anodes made from zinc to the pipe. Zinc acts as the anode (negative terminus) by slowly corroding away as it passes electric current to the steel pipeline. When exposed to environment containing halide ions, of which the chloride (Cl-) is the most frequently encountered in service, the oxide film breaks down at specific points leading to the formation of pits on the zinc surface (3). (author)

  20. Rapid discrimination of sea buckthorn berries from different H. rhamnoides subspecies by multi-step IR spectroscopy coupled with multivariate data analysis

    Science.gov (United States)

    Liu, Yue; Zhang, Ying; Zhang, Jing; Fan, Gang; Tu, Ya; Sun, Suqin; Shen, Xudong; Li, Qingzhu; Zhang, Yi

    2018-03-01

    As an important ethnic medicine, sea buckthorn was widely used to prevent and treat various diseases due to its nutritional and medicinal properties. According to the Chinese Pharmacopoeia, sea buckthorn was originated from H. rhamnoides, which includes five subspecies distributed in China. Confusion and misidentification usually occurred due to their similar morphology, especially in dried and powdered forms. Additionally, these five subspecies have vital differences in quality and physiological efficacy. This paper focused on the quick classification and identification method of sea buckthorn berry powders from five H. rhamnoides subspecies using multi-step IR spectroscopy coupled with multivariate data analysis. The holistic chemical compositions revealed by the FT-IR spectra demonstrated that flavonoids, fatty acids and sugars were the main chemical components. Further, the differences in FT-IR spectra regarding their peaks, positions and intensities were used to identify H. rhamnoides subspecies samples. The discrimination was achieved using principal component analysis (PCA) and partial least square-discriminant analysis (PLS-DA). The results showed that the combination of multi-step IR spectroscopy and chemometric analysis offered a simple, fast and reliable method for the classification and identification of the sea buckthorn berry powders from different H. rhamnoides subspecies.

  1. Analysis of Knickzones over a Coastal Mountain Range of the Korean Peninsula Implies Intensive Uplifts during the Opening of the East Sea

    Science.gov (United States)

    Byun, J.; Paik, K.

    2017-12-01

    The Korean Peninsula jutting out from the Eurasia Continent is bordered to the east by the East Sea (or Sea of Japan), a back-arc sea behind the Japan Islands Arc. Along the eastern margin of the peninsula, a coastal mountain range over 800 km long including peaks reaching up to ca 2,500 m develops with great escarpments facing the East Sea. Compared to the substantial studies related to drifting of the Japanese Islands from the peninsula and consequent the opening of the East Sea as back-arc basin (23 12 Ma), the development of the coastal mountain range assumed to be associated with the East Sea opening is poorly understood. In particular, no consensus has been made regarding the timing of the coastal mountain range: Continuous uplift from the Early Tertiary over the Pliocene versus intensive uplift during the Early Miocene near ca 22 Ma. Addressing this problem could help reveal the relation between the formation of the coastal mountain range and the East Sea opening. In this study, to figure out the timing of the formation of the coastal mountain range, we extracted quantitatively the knickzones in a drainage basin over the coastal mountain range and attempted to analyze the spatial distribution of potential transient knickzones which were induced by the development of the coastal mountain range and then would migrate upstream. According to our analysis, all the identified knickzones (n=19) are revealed as steady-state responses to 1) different lithologies, 2) coarse bed material inputs from tributaries, and 3) more resistant rock patch or local faults. Non-existence of the potential transient knickzones suggests that the transient knickzones due to the coastal mountain range building had already propagated up to each watershed boundary. Sequent analysis on the time spent for knickzone migration up to the boundary reveals that the time when the coastal mountain range had formed back to at least 6 8 Ma. Therefore, it becomes evident that the development of the

  2. Determination of essential and toxic elements in sea bass (Centropomus sp.) and hake (Cynoscion leiarchus) consumed in the city of Sao Paulo by neutron activation analysis

    International Nuclear Information System (INIS)

    Fabiano, Karen C.; Moreira, Edson G.; Vasconcellos, Marina B.A.

    2013-01-01

    The goal was to use the Instrumental Neutron Activation Analysis (INAA) to evaluate the levels of essential and toxic elements in samples of hake (Cynoscion leiarchus) and sea bass (Centropomus sp.) that are most consumed fish in the town of some Sao Paulo. Ten specimens of hake and sea bass were acquired in Companhia de Entrepostos e Armazens Gerais de Sao Paulo (CEAGESP), main supply center for the population of the metropolitan area of Sao Paulo. After gutted and cleaned, the edible tissue was freeze-dried, ground and sieved. The elements were determined through the use of hyperpure germanium spectrometer after irradiation in the nuclear research reactor IEAR-1

  3. Growth conditions of 0-group plaice Pleuronectes platessa in the western Wadden Sea as revealed by otolith microstructure analysis

    Science.gov (United States)

    Cardoso, Joana F. M. F.; Freitas, Vânia; de Paoli, Hélène; Witte, Johannes IJ.; van der Veer, Henk W.

    2016-05-01

    Growth studies based on population-based growth estimates are limited by the fact that they do not take into account differences in age/size structure within the population. To overcome these problems, otolith microstructure analysis is often used to estimate individual growth. Here, we analyse growth of 0-group plaice in the western Wadden Sea in two years: a year preceded by a mild winter (1995) and a year preceded by a severe winter (1996). Growth was analysed by combining information on individual growth based on otolith analysis with predictions of maximum growth (= under optimal food conditions) based on a Dynamic Energy Budget model. Otolith analysis revealed that settlement occurred earlier in 1995 than in 1996. In both years, one main cohort was found, followed by a group of late settlers. No differences in mean length-at-age were found between these groups. DEB modelling suggested that growth was not maximal during the whole growing season: realized growth (the fraction of maximum growth realized by 0-group plaice) declined in the summer, although this decline was relatively small. In addition, late settling individuals exhibited lower realized growth than individuals from the main cohort. This study confirms that growth conditions for 0-group plaice are not optimal and that a growth reduction occurs in summer, as suggested in previous studies.

  4. South China Sea Dispute

    OpenAIRE

    Tanderup, Kasper Buch; Grinderslev, Emil Juhler; Tønnesen-Højbjerg, Asser Laurits Svend

    2017-01-01

    China is rising rapidly in terms of economics, military spending, sphere of influence and claims to in their view former territory. This paper has aimed to discuss the latter through analysis of the present dispute concerning islands and maritime territory in the South China Sea. The Chinese have become increasingly assertive in their claims formulated through a U-shaped line entailing most of the area within the South China Sea. The claims are contested by Vietnam, the Philippines, Indonesia...

  5. Analysis of the projected regional sea-ice changes in the Southern Ocean during the twenty-first century

    Energy Technology Data Exchange (ETDEWEB)

    Lefebvre, W.; Goosse, H. [Universite Catholique de Louvain, Institut d' Astronomie et de Geophysique Georges Lemaitre, Louvain-la-Neuve (Belgium)

    2008-01-15

    Using the set of simulations performed with atmosphere-ocean general circulation models (AOGCMs) for the Fourth Assessment Report of the Intergovernmental Panel on Climate Change (IPCC AR4), the projected regional distribution of sea ice for the twenty-first century has been investigated. Averaged over all those model simulations, the current climate is reasonably well reproduced. However, this averaging procedure hides the errors from individual models. Over the twentieth century, the multimodel average simulates a larger sea-ice concentration decrease around the Antarctic Peninsula compared to other regions, which is in qualitative agreement with observations. This is likely related to the positive trend in the Southern Annular Mode (SAM) index over the twentieth century, in both observations and in the multimodel average. Despite the simulated positive future trend in SAM, such a regional feature around the Antarctic Peninsula is absent in the projected sea-ice change for the end of the twenty-first century. The maximum decrease is indeed located over the central Weddell Sea and the Amundsen-Bellingshausen Seas. In most models, changes in the oceanic currents could play a role in the regional distribution of the sea ice, especially in the Ross Sea, where stronger southward currents could be responsible for a smaller sea-ice decrease during the twenty-first century. Finally, changes in the mixed layer depth can be found in some models, inducing locally strong changes in the sea-ice concentration. (orig.)

  6. Characterization and comparison of proteomes of albino sea cucumber Apostichopus japonicus (Selenka) by iTRAQ analysis.

    Science.gov (United States)

    Xia, Chang-Ge; Zhang, Dijun; Ma, Chengnv; Zhou, Jun; He, Shan; Su, Xiu-Rong

    2016-04-01

    Sea cucumber is a commercially important marine organism in China. Of the different colored varieties sold in China, albino sea cucumber has the greatest appeal among consumers. Identification of factors contributing to albinism in sea cucumber is therefore likely to provide a scientific basis for improving the cultivability of these strains. In this study, two-dimensional liquid chromatography-tandem mass spectrometry coupled with isobaric tags for relative and absolute quantification labeling was used for the first time to quantitatively define the proteome of sea cucumbers and reveal proteomic characteristics unique to albino sea cucumbers. A total of 549 proteins were identified and quantified in albino sea cucumber and the functional annotations of 485 proteins have been exhibited based on COG database. Compared with green sea cucumber, 12 proteins were identified as differentially expressed in the intestine and 16 proteins in the body wall of albino sea cucumber. Among them, 5 proteins were up-regulated in the intestine and 8 proteins were down-regulated in body wall. Gene ontology annotations of these differentially expressed proteins consisted mostly of 'biological process'. The large number of differentially expressed proteins identified here should be highly useful in further elucidating the mechanisms underlying albinism in sea cucumber. Copyright © 2015 Elsevier Ltd. All rights reserved.

  7. Understanding the Spatial Scale of Genetic Connectivity at Sea: Unique Insights from a Land Fish and a Meta-Analysis.

    Directory of Open Access Journals (Sweden)

    Georgina M Cooke

    Full Text Available Quantifying the spatial scale of population connectivity is important for understanding the evolutionary potential of ecologically divergent populations and for designing conservation strategies to preserve those populations. For marine organisms like fish, the spatial scale of connectivity is generally set by a pelagic larval phase. This has complicated past estimates of connectivity because detailed information on larval movements are difficult to obtain. Genetic approaches provide a tractable alternative and have the added benefit of estimating directly the reproductive isolation of populations. In this study, we leveraged empirical estimates of genetic differentiation among populations with simulations and a meta-analysis to provide a general estimate of the spatial scale of genetic connectivity in marine environments. We used neutral genetic markers to first quantify the genetic differentiation of ecologically-isolated adult populations of a land dwelling fish, the Pacific leaping blenny (Alticus arnoldorum, where marine larval dispersal is the only probable means of connectivity among populations. We then compared these estimates to simulations of a range of marine dispersal scenarios and to collated FST and distance data from the literature for marine fish across diverse spatial scales. We found genetic connectivity at sea was extensive among marine populations and in the case of A. arnoldorum, apparently little affected by the presence of ecological barriers. We estimated that ~5000 km (with broad confidence intervals ranging from 810-11,692 km was the spatial scale at which evolutionarily meaningful barriers to gene flow start to occur at sea, although substantially shorter distances are also possible for some taxa. In general, however, such a large estimate of connectivity has important implications for the evolutionary and conservation potential of many marine fish communities.

  8. A global analysis of erosion of sandy beaches and sea-level rise: An application of DIVA

    Science.gov (United States)

    Hinkel, Jochen; Nicholls, Robert J.; Tol, Richard S. J.; Wang, Zheng B.; Hamilton, Jacqueline M.; Boot, Gerben; Vafeidis, Athanasios T.; McFadden, Loraine; Ganopolski, Andrey; Klein, Richard J. T.

    2013-12-01

    This paper presents a first assessment of the global effects of climate-induced sea-level rise on the erosion of sandy beaches, and its consequent impacts in the form of land loss and forced migration of people. We consider direct erosion on open sandy coasts and indirect erosion near selected tidal inlets and estuaries, using six global mean sea-level scenarios (in the range of 0.2-0.8 m) and six SRES socio-economic development scenarios for the 21st century. Impacts are assessed both without and with adaptation in the form of shore and beach nourishment, based on cost-benefit analysis that includes the benefits of maintaining sandy beaches for tourism. Without nourishment, global land loss would amount to about 6000-17,000 km2 during the 21st century, leading to 1.6-5.3 million people being forced to migrate and migration costs of US 300-1000 billion (not discounted). Optimal beach and shore nourishment would cost about US 65-220 billion (not discounted) during the 21st century and would reduce land loss by 8-14%, forced migration by 56-68% and the cost of forced migration by 77-84% (not discounted). The global share of erodible coast that is nourished increases from about 4% in 2000 to 18-33% in 2100, with beach nourishment being 3-4 times more frequent than shore nourishment, reflecting the importance of tourism benefits. In absolute terms, with or without nourishment, large countries with long shorelines appear to have the largest costs, but in relative terms, small island states appear most impacted by erosion. Considerable uncertainty remains due to the limited availability of basic coastal geomorphological data and models on a global scale. Future work should also further explore the effects of beach tourism, including considering sub-national distributions of beach tourists.

  9. Planktonic foraminiferal oxygen isotope analysis by ion microprobe technique suggests warm tropical sea surface temperatures during the Early Paleogene

    Science.gov (United States)

    Kozdon, Reinhard; Kelly, D. Clay; Kita, Noriko T.; Fournelle, John H.; Valley, John W.

    2011-09-01

    Cool tropical sea surface temperatures (SSTs) are reported for warm Paleogene greenhouse climates based on the δ18O of planktonic foraminiferal tests. These results are difficult to reconcile with models of greenhouse gas-forced climate. It has been suggested that this "cool tropics paradox" arises from postdepositional alteration of foraminiferal calcite, yielding erroneously high δ18O values. Recrystallization of foraminiferal tests is cryptic and difficult to quantify, and the compilation of robust δ18O records from moderately altered material remains challenging. Scanning electron microscopy of planktonic foraminiferal chamber-wall cross sections reveals that the basal area of muricae, pustular outgrowths on the chamber walls of species belonging to the genus Morozovella, contain no mural pores and may be less susceptible to postdepositional alteration. We analyzed the δ18O in muricae bases of morozovellids from the central Pacific (Ocean Drilling Program Site 865) by ion microprobe using 10 μm pits with an analytical reproducibility of ±0.34‰ (2 standard deviations). In situ measurements of δ18O in these domains yield consistently lower values than those published for conventional multispecimen analyses. Assuming that the original δ18O is largely preserved in the basal areas of muricae, this new δ18O record indicates Early Paleogene (˜49-56 Ma) tropical SSTs in the central Pacific were 4°-8°C higher than inferred from the previously published δ18O record and that SSTs reached at least ˜33°C during the Paleocene-Eocene thermal maximum. This study demonstrates the utility of ion microprobe analysis for generating more reliable paleoclimate records from moderately altered foraminiferal tests preserved in deep-sea sediments.

  10. Multivariate Empirical Orthogonal Function analysis of the upper thermocline structure of the Mediterranean Sea from observations and model simulations

    Directory of Open Access Journals (Sweden)

    S. Sparnocchia

    Full Text Available Multivariate vertical Empirical Orthogonal Functions (EOF are calculated for the entire Mediterranean Sea both from observations and model simulations, in order to find the optimal number of vertical modes to represent the upper thermocline vertical structure. For the first time, we show that the large-scale Mediterranean thermohaline vertical structure can be represented by a limited number of vertical multivariate EOFs, and that the "optimal set" can be selected on the basis of general principles. In particular, the EOFs are calculated for the combined temperature and salinity statistics, dividing the Mediterranean Sea into 9 regions and grouping the data seasonally. The criterion used to establish whether a reduced set of EOFs is optimal is based on the analysis of the root mean square residual error between the original data and the profiles reconstructed by the reduced set of EOFs. It was found that the number of EOFs needed to capture the variability contained in the original data changes with geographical region and seasons. In particular, winter data require a smaller number of modes (4–8, depending on the region than the other seasons (8–9 in summer. Moreover, western Mediterranean regions require more modes than the eastern Mediterranean ones, but this result may depend on the data scarcity in the latter regions. The EOFs computed from the in situ data set are compared to those calculated using data obtained from a model simulation. The main results of this exercise are that the two groups of modes are not strictly comparable but their ability to reproduce observations is the same. Thus, they may be thought of as equivalent sets of basis functions, upon which to project the thermohaline variability of the basin.

    Key words. Oceanography: general (water masses – Oceanography: physical (hydrography; instruments and techniques

  11. Multivariate Empirical Orthogonal Function analysis of the upper thermocline structure of the Mediterranean Sea from observations and model simulations

    Directory of Open Access Journals (Sweden)

    S. Sparnocchia

    2003-01-01

    Full Text Available Multivariate vertical Empirical Orthogonal Functions (EOF are calculated for the entire Mediterranean Sea both from observations and model simulations, in order to find the optimal number of vertical modes to represent the upper thermocline vertical structure. For the first time, we show that the large-scale Mediterranean thermohaline vertical structure can be represented by a limited number of vertical multivariate EOFs, and that the "optimal set" can be selected on the basis of general principles. In particular, the EOFs are calculated for the combined temperature and salinity statistics, dividing the Mediterranean Sea into 9 regions and grouping the data seasonally. The criterion used to establish whether a reduced set of EOFs is optimal is based on the analysis of the root mean square residual error between the original data and the profiles reconstructed by the reduced set of EOFs. It was found that the number of EOFs needed to capture the variability contained in the original data changes with geographical region and seasons. In particular, winter data require a smaller number of modes (4–8, depending on the region than the other seasons (8–9 in summer. Moreover, western Mediterranean regions require more modes than the eastern Mediterranean ones, but this result may depend on the data scarcity in the latter regions. The EOFs computed from the in situ data set are compared to those calculated using data obtained from a model simulation. The main results of this exercise are that the two groups of modes are not strictly comparable but their ability to reproduce observations is the same. Thus, they may be thought of as equivalent sets of basis functions, upon which to project the thermohaline variability of the basin. Key words. Oceanography: general (water masses – Oceanography: physical (hydrography; instruments and techniques

  12. Stratigraphic, regional unconformity analysis and potential petroleum plays of East Siberian Sea Basin

    Science.gov (United States)

    Karpov, Yury; Stoupakova, Antonina; Suslova, Anna; Agasheva, Mariia

    2017-04-01

    The East Siberian Sea basin (ESSB) one of the most unexplored part of the Russian Arctic shelf, extending for over 1000 km from New Siberian Islands archipelago to Wrangel Island. This region is considered as a region with probable high petroleum potential. Within the ESSB several phases of orogeny are recognized [1]: Elsmerian orogeny in Early Devonian, Early Brooks orogeny in Early Cretaceous, Late Brooks orogeny in Late Cretaceous. Two generations of the basins could be outlined. Both of these generations are controlled by the basement domains [1]: Paleozoic (post-Devonian) to Mesozoic basins preserved north of the Late Mesozoic frontal thrusts; Aptian-Albian to Quaternary basins, postdating the Verkhoyansk-Brookian orogeny, and evolving mainly over the New-Siberian-Chukchi Fold Belt. Basin is filled with siliclastic sediments and in the deepest depocentres sediments thickness exceeds 8-10 km in average. Seismic data was interpreted using methods of seismic stratigraphy. Finally, main seismic horizons were indicated and each horizon follows regional stratigraphic unconformities: mBU - in base of Cenozoic, BU - in base of Upper Cretaceous, LCU - in base of Cretaceous, JU - in middle of Jurassic, F - in top of Basement. In ESSB, we can identify Permian, Triassic, Jurassic, Cretaceous, Paleogene and Neogene seismic stratigraphy complexes. Perspective structures, investigated in ESSB were founded out by comparing seismogeological cross-sections with explored analogs in other onshore and offshore basins [2, 3, 4]. The majority of structures could be connected with stratigraphic and fault traps. The most perspective prospects are probably connected with grabens and depressions, where thickness of sediments exceed 10 km. Reservoirs in ESSB are proposed by regional geological explorations on New Siberian Islands Archipelago and Wrangel Island. Potential seals are predominantly assigned to Jurassic and Cretaceous periods. Thick clinoform units of various geometry and

  13. Mesozooplankton grazing on picocyanobacteria in the Baltic Sea as inferred from molecular diet analysis.

    Directory of Open Access Journals (Sweden)

    Nisha H Motwani

    Full Text Available Our current knowledge on the microbial component of zooplankton diet is limited, and it is generally assumed that bacteria-sized prey is not directly consumed by most mesozooplankton grazers in the marine food webs. We questioned this assumption and conducted field and laboratory studies to examine picocyanobacteria contribution to the diets of Baltic Sea zooplankton, including copepods. First, qPCR targeting ITS-1 rDNA sequence of the picocyanobacteria Synechococcus spp. was used to examine picocyanobacterial DNA occurrence in the guts of Baltic zooplankton (copepods, cladocerans and rotifers. All field-collected zooplankton were found to consume picocyanobacteria in substantial quantities. In terms of Synechococcus quantity, the individual gut content was highest in cladocerans, whereas biomass-specific gut content was highest in rotifers and copepod nauplii. Moreover, the gut content in copepods was positively related to the picocyanobacteria abundance and negatively to the total phytoplankton abundance in the water column at the time of sampling. This indicates that increased availability of picocyanobacteria resulted in the increased intake of this prey and that copepods may rely more on picoplankton when food in the preferred size range declines. Second, a feeding experiments with a laboratory reared copepod Acartia tonsa fed a mixture of the picocyanobacterium Synechococcus bacillaris and microalga Rhodomonas salina confirmed that copepods ingested Synechococcus, even when the alternative food was plentiful. Finally, palatability of the picocyanobacteria for A. tonsa was demonstrated using uptake of (13C by the copepods as a proxy for carbon uptake in feeding experiment with (13C-labeled S. bacillaris. These findings suggest that, if abundant, picoplankton may become an important component of mesozooplankton diet, which needs to be accounted for in food web models and productivity assessments.

  14. Sea Dragon

    National Research Council Canada - National Science Library

    1997-01-01

    .... In preparation for these changes, the Navy is exploring new command and control relationships, and the Marine Corps established Sea Dragon to experiment with emerging technologies, operational...

  15. Comprehensive enzymatic analysis of the cellulolytic system in digestive fluid of the Sea Hare Aplysia kurodai. Efficient glucose release from sea lettuce by synergistic action of 45 kDa endoglucanase and 210 kDa ß-glucosidase.

    Directory of Open Access Journals (Sweden)

    Akihiko Tsuji

    Full Text Available Although many endo-ß-1,4-glucanases have been isolated in invertebrates, their cellulolytic systems are not fully understood. In particular, gastropod feeding on seaweed is considered an excellent model system for production of bioethanol and renewable bioenergy from third-generation feedstocks (microalgae and seaweeds. In this study, enzymes involved in the conversion of cellulose and other polysaccharides to glucose in digestive fluids of the sea hare (Aplysia kurodai were screened and characterized to determine how the sea hare obtains glucose from sea lettuce (Ulva pertusa. Four endo-ß-1,4-glucanases (21K, 45K, 65K, and 95K cellulase and 2 ß-glucosidases (110K and 210K were purified to a homogeneous state, and the synergistic action of these enzymes during cellulose digestion was analyzed. All cellulases exhibited cellulase and lichenase activities and showed distinct cleavage specificities against cellooligosaccharides and filter paper. Filter paper was digested to cellobiose, cellotriose, and cellotetraose by 21K cellulase, whereas 45K and 65K enzymes hydrolyzed the filter paper to cellobiose and glucose. 210K ß-glucosidase showed unique substrate specificity against synthetic and natural substrates, and 4-methylumbelliferyl (4MU-ß-glucoside, 4MU-ß-galactoside, cello-oligosaccharides, laminarin, and lichenan were suitable substrates. Furthermore, 210K ß-glucosidase possesses lactase activity. Although ß-glucosidase and cellulase are necessary for efficient hydrolysis of carboxymethylcellulose to glucose, laminarin is hydrolyzed to glucose only by 210K ß-glucosidase. Kinetic analysis of the inhibition of 210K ß-glucosidase by D-glucono-1,5-lactone suggested the presence of 2 active sites similar to those of mammalian lactase-phlorizin hydrolase. Saccharification of sea lettuce was considerably stimulated by the synergistic action of 45K cellulase and 210K ß-glucosidase. Our results indicate that 45K cellulase and 210K

  16. cDNA cloning, expression and immune function analysis of a novel Rac1 gene (AjRac1) in the sea cucumber Apostichopus japonicus.

    Science.gov (United States)

    Li, Kaiquan; Liu, Lin; Shang, Shengnan; Wang, Yi; Zhan, Yaoyao; Song, Jian; Zhang, Xiangxiang; Chang, Yaqing

    2017-10-01

    The ras-related C3 botulinum toxin substrate 1 (Rac1) belongs to Ras homolog (Rho) small GTPases subfamily. As an important molecular switch, Rac1 regulates various processes in the cell, especially in cellular immune response. With attempt to clarify characters and functions of Rac1 in sea cucumbers, full length cDNA of a Rac1 homolog in the sea cucumber Apostichopus japonicus (AjRac1) was cloned by transcriptome database mining and rapid amplification of cDNA ends (RACE) techniques. The open reading frame of AjRac1 is 579 bp encoding a protein with a length of 192 aa. Sequence analysis showed that AjRac1 is highly conserved as compared to those from other eukaryotic species. Phylogenetic analysis revealed that amino acid sequence of AjRac1 closely related to those from Strongylocentrotus purpuratus. Results of expression analysis showed that AjRac1 exhibited a relative high expression in blastula stage, adult coelomocytes and respiratory tree in A. japonicus. The transcription of AjRac1 in adult coelomocytes altered significantly at 4 h- and 12 h-after Vibrio splendidus infection, respectively, which indicated that AjRac1 involved in sea cucumber innate immunity. All data presented in this study will deepen our understanding of characterizations and immunological functions of Rac1 in sea cucumbers. Copyright © 2017 Elsevier Ltd. All rights reserved.

  17. Information and analysis document. Hydrocarbons of the Caspian sea: actors and stakes; Dossier d'information et d'analyse. Les hydrocarbures de mer Caspienne: acteurs et enjeux

    Energy Technology Data Exchange (ETDEWEB)

    Noel, P.

    1998-03-01

    The Caspian sea basin constitutes an important petroleum reserve from which the exploration and development just begin. It should provide near 5 % of the world petroleum offer in 2015. To evaluate the stakes of the situation, the author presents an analysis of the Caspian sea reserves in three main parts: the Caspian sea hydrocarbons and the energy geo-politics, the realizations and the projects of the transport infrastructures, the international participations in the main petroleum and gaseous contracts. (A.L.B.)

  18. Analysis of chlorophyll pigment concentration in the northern Arabian Sea using remote sensing and GIS

    Digital Repository Service at National Institute of Oceanography (India)

    Thapa, S.

    hits a phytoplankton, all of the li absorbed. All light, which is not abso back to the human eye, which is w Chlorophyll a absorbs maximally at 440 and 675nm. Using this principle of light absorption by phytoplankton, it is possible to detect them... and lanning, transportation and infrastructure planning, market analysis, visual pact analysis, facilities management, tax assessment, real estate analysis nd many other applications.�1�1 .2 FUNCTIONS OF GIS ata entry ata display ata management ata Output .3...

  19. Analysis of earthquake clustering and source spectra in the Salton Sea Geothermal Field

    Science.gov (United States)

    Cheng, Y.; Chen, X.

    2015-12-01

    The Salton Sea Geothermal field is located within the tectonic step-over between San Andreas Fault and Imperial Fault. Since the 1980s, geothermal energy exploration has resulted with step-like increase of microearthquake activities, which mirror the expansion of geothermal field. Distinguishing naturally occurred and induced seismicity, and their corresponding characteristics (e.g., energy release) is important for hazard assessment. Between 2008 and 2014, seismic data recorded by a local borehole array were provided public access from CalEnergy through SCEC data center; and the high quality local recording of over 7000 microearthquakes provides unique opportunity to sort out characteristics of induced versus natural activities. We obtain high-resolution earthquake location using improved S-wave picks, waveform cross-correlation and a new 3D velocity model. We then develop method to identify spatial-temporally isolated earthquake clusters. These clusters are classified into aftershock-type, swarm-type, and mixed-type (aftershock-like, with low skew, low magnitude and shorter duration), based on the relative timing of largest earthquakes and moment-release. The mixed-type clusters are mostly located at 3 - 4 km depth near injection well; while aftershock-type clusters and swarm-type clusters also occur further from injection well. By counting number of aftershocks within 1day following mainshock in each cluster, we find that the mixed-type clusters have much higher aftershock productivity compared with other types and historic M4 earthquakes. We analyze detailed spatial variation of 'b-value'. We find that the mixed-type clusters are mostly located within high b-value patches, while large (M>3) earthquakes and other types of clusters are located within low b-value patches. We are currently processing P and S-wave spectra to analyze the spatial-temporal correlation of earthquake stress parameter and seismicity characteristics. Preliminary results suggest that the

  20. Spatial-Temporal Variations of Turbidity and Ocean Current Velocity of the Ariake Sea Area, Kyushu, Japan Through Regression Analysis with Remote Sensing Satellite Data

    OpenAIRE

    Yuichi Sarusawa; Kohei Arai

    2013-01-01

    Regression analysis based method for turbidity and ocean current velocity estimation with remote sensing satellite data is proposed. Through regressive analysis with MODIS data and measured data of turbidity and ocean current velocity, regressive equation which allows estimation of turbidity and ocean current velocity is obtained. With the regressive equation as well as long term MODIS data, turbidity and ocean current velocity trends in Ariake Sea area are clarified. It is also confirmed tha...

  1. Statistical properties of coastal long waves analysed through sea-level time-gradient functions: exemplary analysis of the Siracusa, Italy, tide-gauge data

    Directory of Open Access Journals (Sweden)

    L. Bressan

    2016-01-01

    reconstructed sea level (RSL, the background slope (BS and the control function (CF. These functions are examined through a traditional spectral fast Fourier transform (FFT analysis and also through a statistical analysis, showing that they can be characterised by probability distribution functions PDFs such as the Student's t distribution (IS and RSL and the beta distribution (CF. As an example, the method has been applied to data from the tide-gauge station of Siracusa, Italy.

  2. New high-resolution record of Holocene climate change in the Weddell Sea from combined biomarker analysis of the Patriot Hills blue ice area

    Science.gov (United States)

    Fogwill, Christopher; Turney, Chris; Baker, Andy; Ellis, Bethany; Cooper, Alan; Etheridge, David; Rubino, Mauro; Thornton, David; Fernando, Francisco; Bird, Michale; Munksgaard, Niels

    2017-04-01

    We report preliminary analysis of biomarkers (including dissolved organic matter (DOM) and DNA) from the Patriot Hills blue ice area (BIA), from the Ellsworth Mountains in the Weddell Sea Embayment. Preliminary isotopic and multiple gas analysis (CO2, CH4, N2O and CO) demonstrate that the Holocene comprises more than 50% of the 800m long BIA record, and in combination isotopic and biomarker analysis reveals a remarkable record of centennial variability through the Holocene in this sector of the Weddell Sea. Analysis using a Horiba Aqualog - which measures the fluorescence of DOM by producing a map of the fluorescence through an excitation-emission matrix (EEM) - identifies the presence of two marine protein-like components in both modern snow pit samples and within the Holocene part of Patriot Hills BIA transect. Intriguingly, the modern seasonal trends in DOM, recorded in contemporary snow pits, have relatively low signals compared to those recorded in the mid-Holocene record, suggesting a reduction in DOM signal in contemporary times. Given that the δD excess data suggests the source of precipitation has remained constant through the Holocene, the biomarker signal must relate to multi-year marine productivity signals from the Weddell Sea. The marked variability in DOM between the mid-Holocene and contemporary times can only relate to periods of sustained, enhanced biological productivity in the Weddell Sea associated with shifts in Southern Annular Mode, sea ice variability, changes in ventilation or polynya activity. Here we discuss the possible drivers of these changes and describe how this approach at this BIA could benefit conventional ice core records regionally.

  3. The Potential for Renewable Energy Development to Benefit Restoration of the Salton Sea. Analysis of Technical and Market Potential

    Energy Technology Data Exchange (ETDEWEB)

    Gagne, Douglas [National Renewable Energy Lab. (NREL), Golden, CO (United States); Haase, Scott [National Renewable Energy Lab. (NREL), Golden, CO (United States); Oakleaf, Brett [National Renewable Energy Lab. (NREL), Golden, CO (United States); Hurlbut, David [National Renewable Energy Lab. (NREL), Golden, CO (United States); Akar, Sertac [National Renewable Energy Lab. (NREL), Golden, CO (United States); Wall, Anna [National Renewable Energy Lab. (NREL), Golden, CO (United States); Turchi, Craig [National Renewable Energy Lab. (NREL), Golden, CO (United States); Pienkos, Philip [National Renewable Energy Lab. (NREL), Golden, CO (United States); Melius, Jennifer [National Renewable Energy Lab. (NREL), Golden, CO (United States); Melaina, Marc [National Renewable Energy Lab. (NREL), Golden, CO (United States)

    2015-11-01

    This report summarizes the potential for renewable energy development in the Salton Sea region, as well as the potential for revenues from this development to contribute financially to Salton Sea restoration costs. It considers solar, geothermal, biofuels or nutraceutical production from algae pond cultivation, desalination using renewable energy, and mineral recovery from geothermal fluids.


  4. Analysis of vector magnetic anomalies over the Bayonnaise Knoll caldera obtained from a deep-sea magnetic exploration by AUV

    Science.gov (United States)

    Sayanagi, K.; Isezaki, N.; Matsuo, J.; Harada, M.; Kasaya, T.

    2011-12-01

    Geophysical surveys near the seafloor are very effective methods in order to investigate fine structures of the oceanic crust. Such surveys have increased in researches and developments of the seafloor, and will be more and more necessary in the future. For example, seabed resources like hydrothermal deposits have recently focused attention behind the international situation for natural resources like a competition of resources development. In order to estimate accurate abundance of those resources, the above detailed investigations should be needed because of low resolution of geophysical surveys on the sea and low efficiency of exploratory drilling. From such a viewpoint, we have been developing a measurement system for magnetic explorations using an AUV and a deep-tow system. The magnetic exploration system consists of two 3-axis flux-gate magnetometers, one/two Overhauser magnetometer(s), an optical fiber gyro, a main unit (control, communication, recording), and an onboard unit. These devices except for the onboard unit are installed in pressure cases (depth limit: 6000m). Thus this system can measure three components and total intensity of the geomagnetic field in the deep sea. In 2009, the first test of the magnetic exploration system was carried out in the Kumano Basin using AUV Urashima and towing vehicle Yokosuka Deep-Tow during the R/V Yokosuka YK09-09 cruise. In this test, we sank a small magnetic target to the seafloor, and examined how the system worked. As a result, we successfully detected magnetic anomaly of the target to confirm the expected performance of that in the sea. In 2010, the magnetic exploration system was further tested in the Bayonnaise Knoll area both using a titanium towing frame during the R/V Bosei-maru cruise and using AUV Urashima during the R/V Yokosuka YK10-17 cruise. The purpose of these tests was to evaluate the performance of the system in an actual hydrothermal deposit area for practical applications of that. The

  5. Black Sea aerosols

    International Nuclear Information System (INIS)

    Hacisalihoglu, G.; Eliyakut, F.; Anwari, M.A.; Ataman, O.Y.; Balkas, T.I.; Tuncel, G.; Olmez, I.

    1991-01-01

    Shipboard, high volume air particulate samples were collected from the Black Sea atmosphere and analyzed by instrumental neutron activation analysis, atomic absorption spectrophotometry and ion chromatography for about 40 elements and ions. Concentrations of elements in the eastern and western parts of the Black Sea are different at the 95% confidence level, with lower concentrations in the eastern Black Sea. Back-trajectories and concentrations of elements in trajectory groups show that Europe accounts for more than 70% of the anthropogenic elements in the atmosphere. The average sulfate concentration was 7 μg/m 3 , which is comparable with rural sulfate levels in western Europe. Fluxes of elements from the atmosphere to the Black Sea are in good agreement with the results of similar flux calculations for other regions

  6. Sea Surface Height Variability and Eddy Statistical Properties in the Red Sea

    KAUST Repository

    Zhan, Peng

    2013-01-01

    Satellite sea surface height (SSH) data over 1992-2012 are analyzed to study the spatial and temporal variability of sea level in the Red Sea. Empirical orthogonal functions (EOF) analysis suggests the remarkable seasonality of SSH in the Red Sea

  7. Monitoring sea level and sea surface temperature trends from ERS satellites

    DEFF Research Database (Denmark)

    Andersen, Ole Baltazar; Knudsen, Per; Beckley, B.

    2002-01-01

    Data from the two ESA satellites ERS-1 and ERS-2 are used in global and regional analysis of sea level and sea surface temperature trends over the last, 7.8 years. T he ERS satellites and in the future the ENVISAT satellite provide unique opportunity for monitoring both changes in sea level and sea...

  8. Transcriptome Analysis and Discovery of Genes Involved in Immune Pathways from Coelomocytes of Sea Cucumber (Apostichopus japonicus after Vibrio splendidus Challenge

    Directory of Open Access Journals (Sweden)

    Qiong Gao

    2015-07-01

    Full Text Available Vibrio splendidus is identified as one of the major pathogenic factors for the skin ulceration syndrome in sea cucumber (Apostichopus japonicus, which has vastly limited the development of the sea cucumber culture industry. In order to screen the immune genes involving Vibrio splendidus challenge in sea cucumber and explore the molecular mechanism of this process, the related transcriptome and gene expression profiling of resistant and susceptible biotypes of sea cucumber with Vibrio splendidus challenge were collected for analysis. A total of 319,455,942 trimmed reads were obtained, which were assembled into 186,658 contigs. After that, 89,891 representative contigs (without isoform were clustered. The analysis of the gene expression profiling identified 358 differentially expression genes (DEGs in the bacterial-resistant group, and 102 DEGs in the bacterial-susceptible group, compared with that in control group. According to the reported references and annotation information from BLAST, GO and KEGG, 30 putative bacterial-resistant genes and 19 putative bacterial-susceptible genes were identified from DEGs. The qRT-PCR results were consistent with the RNA-Seq results. Furthermore, many DGEs were involved in immune signaling related pathways, such as Endocytosis, Lysosome, MAPK, Chemokine and the ERBB signaling pathway.

  9. Transcriptome Analysis and Discovery of Genes Involved in Immune Pathways from Coelomocytes of Sea Cucumber (Apostichopus japonicus) after Vibrio splendidus Challenge.

    Science.gov (United States)

    Gao, Qiong; Liao, Meijie; Wang, Yingeng; Li, Bin; Zhang, Zheng; Rong, Xiaojun; Chen, Guiping; Wang, Lan

    2015-07-17

    Vibrio splendidus is identified as one of the major pathogenic factors for the skin ulceration syndrome in sea cucumber (Apostichopus japonicus), which has vastly limited the development of the sea cucumber culture industry. In order to screen the immune genes involving Vibrio splendidus challenge in sea cucumber and explore the molecular mechanism of this process, the related transcriptome and gene expression profiling of resistant and susceptible biotypes of sea cucumber with Vibrio splendidus challenge were collected for analysis. A total of 319,455,942 trimmed reads were obtained, which were assembled into 186,658 contigs. After that, 89,891 representative contigs (without isoform) were clustered. The analysis of the gene expression profiling identified 358 differentially expression genes (DEGs) in the bacterial-resistant group, and 102 DEGs in the bacterial-susceptible group, compared with that in control group. According to the reported references and annotation information from BLAST, GO and KEGG, 30 putative bacterial-resistant genes and 19 putative bacterial-susceptible genes were identified from DEGs. The qRT-PCR results were consistent with the RNA-Seq results. Furthermore, many DGEs were involved in immune signaling related pathways, such as Endocytosis, Lysosome, MAPK, Chemokine and the ERBB signaling pathway.

  10. Pattern Analysis of El Nino and La Nina Phenomenon Based on Sea Surface Temperature (SST) and Rainfall Intensity using Oceanic Nino Index (ONI) in West Java Area

    Science.gov (United States)

    Prasetyo, Yudo; Nabilah, Farras

    2017-12-01

    Climate change occurs in 1998-2016 brings significant alteration in the earth surface. It is affects an extremely anomaly temperature such as El Nino and La Nina or mostly known as ENSO (El Nino Southern Oscillation). West Java is one of the regions in Indonesia that encounters the impact of this phenomenon. Climate change due to ENSO also affects food production and other commodities. In this research, processing data method is conducted using programming language to process SST data and rainfall data from 1998 to 2016. The data are sea surface temperature from NOAA satellite, SST Reynolds (Sea Surface Temperature) and daily rainfall temperature from TRMM satellite. Data examination is done using analysis of rainfall spatial pattern and sea surface temperature (SST) where is affected by El Nino and La Nina phenomenon. This research results distribution map of SST and rainfall for each season to find out the impacts of El Nino and La Nina around West Java. El Nino and La Nina in Java Sea are occurring every August to February. During El Nino, sea surface temperature is between 27°C - 28°C with average temperature on 27.71°C. Rainfall intensity is 1.0 mm/day - 2.0 mm/day and the average are 1.63 mm/day. During La Nina, sea surface temperature is between 29°C - 30°C with average temperature on 29.06°C. Rainfall intensity is 9.0 mm/day - 10 mm/day, and the average is 9.74 mm/day. The correlation between rainfall and SST is 0,413 which is expresses a fairly strong correlation between parameters. The conclusion is, during La Nina SST and rainfall increase. While during El Nino SST and rainfall decrease. Hopefully this research could be a guideline to plan disaster mitigation in West Java region that is related extreme climate change.

  11. Exergy analysis of offshore processes on North Sea oil and gas platforms

    DEFF Research Database (Denmark)

    Nguyen, Tuong-Van; Pierobon, Leonardo; Elmegaard, Brian

    2012-01-01

    generation. In this paper, the most thermodynamically inefficient processes are identified by performing an exergy analysis, based on models built with the simulation tools Aspen Plus®, DNA and Aspen HYSYS®. Results reveal that the total exergy destruction of the system amounts to 69.4 MW, while the total...

  12. Climatology of sea breezes along the Red Sea coast of Saudi Arabia

    KAUST Repository

    Khan, Basit

    2018-04-25

    Long-term near-surface observations from five coastal stations, high-resolution model data from Modern Era Retrospective-Analysis for Research and Applications (MERRA) and high-resolution daily sea surface temperature (SST) from National Ocean and Atmospheric Administration (NOAA) are used to investigate the climatology of sea breezes over the eastern side of the Red Sea region. Results show existence of separate sea breeze systems along different segments of the Red Sea coastline. Based on the physical character and synoptic influences, sea breezes in the Red Sea are broadly divided into three regions: the north and the middle Red Sea (NMRS), the Red Sea convergence zone (RSCZ) and the southern Red Sea (SRS) regions. On average, sea breezes developed on 67% of days of the 10-year study period. Although sea breezes occur almost all year, this mesoscale phenomenon is most frequent from May to October (78% of the total sea breeze days). The sea breeze frequency increases from north to south (equatorwards), and sea breeze characteristics appear to vary both temporally and spatially. In addition to land-sea thermal differential, coastline shape, latitude and topography, the prevailing northwesterly at NMRS region, the convergence of northwesterly and southeasterly wind system at RSCZ region and the northeast and southwest monsoon at SRS region play an important role in defining the sea breeze characteristics over the Red Sea.

  13. Spatial gene expression quantification: a tool for analysis of in situ hybridizations in sea anemone Nematostella vectensis

    Directory of Open Access Journals (Sweden)

    Botman Daniel

    2012-10-01

    Full Text Available Abstract Background Spatial gene expression quantification is required for modeling gene regulation in developing organisms. The fruit fly Drosophila melanogaster is the model system most widely applied for spatial gene expression analysis due to its unique embryonic properties: the shape does not change significantly during its early cleavage cycles and most genes are differentially expressed along a straight axis. This system of development is quite exceptional in the animal kingdom. In the sea anemone Nematostella vectensis the embryo changes its shape during early development; there are cell divisions and cell movement, like in most other metazoans. Nematostella is an attractive case study for spatial gene expression since its transparent body wall makes it accessible to various imaging techniques. Findings Our new quantification method produces standardized gene expression profiles from raw or annotated Nematostella in situ hybridizations by measuring the expression intensity along its cell layer. The procedure is based on digital morphologies derived from high-resolution fluorescence pictures. Additionally, complete descriptions of nonsymmetric expression patterns have been constructed by transforming the gene expression images into a three-dimensional representation. Conclusions We created a standard format for gene expression data, which enables quantitative analysis of in situ hybridizations from embryos with various shapes in different developmental stages. The obtained expression profiles are suitable as input for optimization of gene regulatory network models, and for correlation analysis of genes from dissimilar Nematostella morphologies. This approach is potentially applicable to many other metazoan model organisms and may also be suitable for processing data from three-dimensional imaging techniques.

  14. Stable isotope tracking of endangered sea turtles: validation with satellite telemetry and δ15N analysis of amino acids.

    Directory of Open Access Journals (Sweden)

    Jeffrey A Seminoff

    Full Text Available Effective conservation strategies for highly migratory species must incorporate information about long-distance movements and locations of high-use foraging areas. However, the inherent challenges of directly monitoring these factors call for creative research approaches and innovative application of existing tools. Highly migratory marine species, such as marine turtles, regularly travel hundreds or thousands of kilometers between breeding and feeding areas, but identification of migratory routes and habitat use patterns remains elusive. Here we use satellite telemetry in combination with compound-specific isotope analysis of amino acids to confirm that insights from bulk tissue stable isotope analysis can reveal divergent migratory strategies and within-population segregation of foraging groups of critically endangered leatherback sea turtles (Dermochelys coriacea across the Pacific Ocean. Among the 78 turtles studied, we found a distinct dichotomy in δ(15N values of bulk skin, with distinct "low δ(15N" and "high δ(15N" groups. δ(15N analysis of amino acids confirmed that this disparity resulted from isotopic differences at the base of the food chain and not from differences in trophic position between the two groups. Satellite tracking of 13 individuals indicated that their bulk skin δ(15N value was linked to the particular foraging region of each turtle. These findings confirm that prevailing marine isoscapes of foraging areas can be reflected in the isotopic compositions of marine turtle body tissues sampled at nesting beaches. We use a Bayesian mixture model to show that between 82 and 100% of the 78 skin-sampled turtles could be assigned with confidence to either the eastern Pacific or western Pacific, with 33 to 66% of all turtles foraging in the eastern Pacific. Our forensic approach validates the use of stable isotopes to depict leatherback turtle movements over broad spatial ranges and is timely for establishing wise conservation

  15. Stable isotope tracking of endangered sea turtles: validation with satellite telemetry and δ15N analysis of amino acids.

    Science.gov (United States)

    Seminoff, Jeffrey A; Benson, Scott R; Arthur, Karen E; Eguchi, Tomoharu; Dutton, Peter H; Tapilatu, Ricardo F; Popp, Brian N

    2012-01-01

    Effective conservation strategies for highly migratory species must incorporate information about long-distance movements and locations of high-use foraging areas. However, the inherent challenges of directly monitoring these factors call for creative research approaches and innovative application of existing tools. Highly migratory marine species, such as marine turtles, regularly travel hundreds or thousands of kilometers between breeding and feeding areas, but identification of migratory routes and habitat use patterns remains elusive. Here we use satellite telemetry in combination with compound-specific isotope analysis of amino acids to confirm that insights from bulk tissue stable isotope analysis can reveal divergent migratory strategies and within-population segregation of foraging groups of critically endangered leatherback sea turtles (Dermochelys coriacea) across the Pacific Ocean. Among the 78 turtles studied, we found a distinct dichotomy in δ(15)N values of bulk skin, with distinct "low δ(15)N" and "high δ(15)N" groups. δ(15)N analysis of amino acids confirmed that this disparity resulted from isotopic differences at the base of the food chain and not from differences in trophic position between the two groups. Satellite tracking of 13 individuals indicated that their bulk skin δ(15)N value was linked to the particular foraging region of each turtle. These findings confirm that prevailing marine isoscapes of foraging areas can be reflected in the isotopic compositions of marine turtle body tissues sampled at nesting beaches. We use a Bayesian mixture model to show that between 82 and 100% of the 78 skin-sampled turtles could be assigned with confidence to either the eastern Pacific or western Pacific, with 33 to 66% of all turtles foraging in the eastern Pacific. Our forensic approach validates the use of stable isotopes to depict leatherback turtle movements over broad spatial ranges and is timely for establishing wise conservation efforts in

  16. Numerical Simulation of Heavy Rainfall in August 2014 over Japan and Analysis of Its Sensitivity to Sea Surface Temperature

    Directory of Open Access Journals (Sweden)

    Yuki Minamiguchi

    2018-02-01

    Full Text Available This study evaluated the performance of the Weather Research and Forecasting (WRF model version 3.7 for simulating a series of rainfall events in August 2014 over Japan and investigated the impact of uncertainty in sea surface temperature (SST on simulated rainfall in the record-high precipitation period. WRF simulations for the heavy rainfall were conducted for six different cases. The heavy rainfall events caused by typhoons and rain fronts were similarly accurately reproduced by three cases: the TQW_5km case with grid nudging for air temperature, humidity, and wind and with a horizontal resolution of 5 km; W_5km with wind nudging and 5-km resolution; and W_2.5km with wind nudging and 2.5-km resolution. Because the nudging for air temperature and humidity in TQW_5km suppresses the influence of SST change, and because W_2.5km requires larger computational load, W_5km was selected as the baseline case for a sensitivity analysis of SST. In the sensitivity analysis, SST around Japan was homogeneously changed by 1 K from the original SST data. The analysis showed that the SST increase led to a larger amount of precipitation in the study period in Japan, with the mean increase rate of precipitation being 13 ± 8% K−1. In addition, 99 percentile precipitation (100 mm d−1 in the baseline case increased by 13% K−1 of SST warming. These results also indicate that an uncertainty of approximately 13% in the simulated heavy rainfall corresponds to an uncertainty of 1 K in SST data around Japan in the study period.

  17. Extended Reconstructed Sea Surface Temperature (ERSST)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — The Extended Reconstructed Sea Surface Temperature (ERSST) dataset is a global monthly sea surface temperature analysis derived from the International Comprehensive...

  18. Analysis and Experiments on Sea Load and Fastened Mechanics on Pipe Clamps

    Directory of Open Access Journals (Sweden)

    Wang Zhuo

    2017-08-01

    Full Text Available When an offshore oil field completed and put into production, new subsea pipelines and the new cable need to be established. Cable protection pipe clamp is used to fix cable protection pipe on the jacket. In order to avoid the problem of traditional steel structure clamp splice, counterpoint, fastening difficulty when installed cable protection pipe under water, reduce the risk and workload of under water, This paper develop a new type of portable connecting riser clamp -“backpack clamp” which solve the riser cable protection pipe difficult underwater installation problem. The main structure of backpack clamp used three valves type structure. The load characteristic of a clamping device was determined by the Morison equation which was a classical theory. Clamp device underwater mechanics analysis model was established. The minimum tension pre-tightening force was determined. The results show that the strength of the base meets the requirements after strength analysis with finite element analysis method, stability and strength experiments, which means the clamp based on resin matrix composite is feasible.

  19. [Application of excitation-emission matrix spectrum combined with parallel factor analysis in dissolved organic matter in East China Sea].

    Science.gov (United States)

    Lü, Li-Sha; Zhao, Wei-Hong; Miao, Hui

    2013-03-01

    Using excitation-emission matrix spectrum(EEMs) combined with parallel factor analysis (PARAFAC) examine the fluorescent components feature of dissolved organic matter (DOM) sampled from East China Sea in the summer and autumn was examined. The type, distribution and origin of the fluorescence dissolved organic matter were also discussed. Three fluorescent components were identified by PARAFAC, including protein-like component C1 (235, 280/330), terrestrial or marine humic-like component C2 (255, 330/400) and terrestrial humic-like component C3 (275, 360/480). The good linearity of the two humic-like components showed the same source or some relationship between the chemical constitutions. As a whole, the level of the fluorescence intensity in coastal ocean was higher than that of the open ocean in different water layers in two seasons. The relationship of three components with chlorophyll-a and salinity showed the DOM in the study area is almost not influenced by the living algal matter, but the fresh water outflow of the Yangtze River might be the source of them in the Yangtze River estuary in Summer. From what has been discussed above, we can draw the conclusion that the application of EEM-PARAFAC modeling will exert a profound influence upon the research of the dissolved organic matter.

  20. Selection of reference genes for qRT-PCR analysis of gene expression in sea cucumber Apostichopus japonicus during aestivation

    Science.gov (United States)

    Zhao, Ye; Chen, Muyan; Wang, Tianming; Sun, Lina; Xu, Dongxue; Yang, Hongsheng

    2014-11-01

    Quantitative real-time reverse transcription-polymerase chain reaction (qRT-PCR) is a technique that is widely used for gene expression analysis, and its accuracy depends on the expression stability of the internal reference genes used as normalization factors. However, many applications of qRT-PCR used housekeeping genes as internal controls without validation. In this study, the expression stability of eight candidate reference genes in three tissues (intestine, respiratory tree, and muscle) of the sea cucumber Apostichopus japonicus was assessed during normal growth and aestivation using the geNorm, NormFinder, delta CT, and RefFinder algorithms. The results indicate that the reference genes exhibited significantly different expression patterns among the three tissues during aestivation. In general, the β-tubulin (TUBB) gene was relatively stable in the intestine and respiratory tree tissues. The optimal reference gene combination for intestine was 40S ribosomal protein S18 (RPS18), TUBB, and NADH dehydrogenase (NADH); for respiratory tree, it was β-actin (ACTB), TUBB, and succinate dehydrogenase cytochrome B small subunit (SDHC); and for muscle it was α-tubulin (TUBA) and NADH dehydrogenase [ubiquinone] 1 α subcomplex subunit 13 (NDUFA13). These combinations of internal control genes should be considered for use in further studies of gene expression in A. japonicus during aestivation.

  1. Expression Analysis of Immune Related Genes Identified from the Coelomocytes of Sea Cucumber (Apostichopus japonicus in Response to LPS Challenge

    Directory of Open Access Journals (Sweden)

    Ying Dong

    2014-10-01

    Full Text Available The sea cucumber (Apostichopus japonicus occupies a basal position during the evolution of deuterostomes and is also an important aquaculture species. In order to identify more immune effectors, transcriptome sequencing of A. japonicus coelomocytes in response to lipopolysaccharide (LPS challenge was performed using the Illumina HiSeq™ 2000 platform. One hundred and seven differentially expressed genes were selected and divided into four functional categories including pathogen recognition (25 genes, reorganization of cytoskeleton (27 genes, inflammation (41 genes and apoptosis (14 genes. They were analyzed to elucidate the mechanisms of host-pathogen interactions and downstream signaling transduction. Quantitative real-time polymerase chain reactions (qRT-PCRs of 10 representative genes validated the accuracy and reliability of RNA sequencing results with the correlation coefficients from 0.88 to 0.98 and p-value <0.05. Expression analysis of immune-related genes after LPS challenge will be useful in understanding the immune response mechanisms of A. japonicus against pathogen invasion and developing strategies for resistant markers selection.

  2. Inside versus Outside: Ion Redistribution in Nitric Acid Reacted Sea Spray Aerosol Particles as Determined by Single Particle Analysis (Invited)

    Science.gov (United States)

    Ault, A. P.; Guasco, T.; Ryder, O. S.; Baltrusaitis, J.; Cuadra-Rodriguez, L. A.; Collins, D. B.; Ruppel, M. J.; Bertram, T. H.; Prather, K. A.; Grassian, V. H.

    2013-12-01

    Sea spray aerosol (SSA) particles were generated under real-world conditions using natural seawater and a unique ocean-atmosphere facility equipped with actual breaking waves or a marine aerosol reference tank (MART) that replicates those conditions. The SSA particles were exposed to nitric acid in situ in a flow tube and the well-known chloride displacement and nitrate formation reaction was observed. However, as discussed here, little is known about how this anion displacement reaction affects the distribution of cations and other chemical constituents within and phase state of individual SSA particles. Single particle analysis of individual SSA particles shows that cations (Na+, K+, Mg2+ and Ca2+) within individual particles undergo a spatial redistribution after heterogeneous reaction with nitric acid, along with a more concentrated layer of organic matter at the surface of the particle. These data suggest that specific ion and aerosol pH effects play an important role in aerosol particle structure in ways that have not been previously recognized. The ordering of organic coatings can impact trace gas uptake, and subsequently impact trace gas budgets of O3 and NOx.

  3. Antibiotics in the coastal environment of the Hailing Bay region, South China Sea: Spatial distribution, source analysis and ecological risks

    International Nuclear Information System (INIS)

    Chen, Hui; Liu, Shan; Xu, Xiang-Rong; Zhou, Guang-Jie; Liu, Shuang-Shuang; Yue, Wei-Zhong; Sun, Kai-Feng; Ying, Guang-Guo

    2015-01-01

    Highlights: • Thirty-eight antibiotics were systematically investigated in marine environment. • The distribution of antibiotics was significantly correlated with COD and NO 3 –N. • Untreated domestic sewage was the primary source of antibiotics. • Fluoroquinolones showed a strong sorption capacity onto sediments. • Oxytetracycline, norfloxacin and erythromycin–H 2 O indicated high risks. - Abstract: In this study, the occurrence and spatial distribution of 38 antibiotics in surface water and sediment samples of the Hailing Bay region, South China Sea, were investigated. Twenty-one, 16 and 15 of 38 antibiotics were detected with the concentrations ranging from <0.08 (clarithromycin) to 15,163 ng/L (oxytetracycline), 2.12 (methacycline) to 1318 ng/L (erythromycin–H 2 O), <1.95 (ciprofloxacin) to 184 ng/g (chlortetracycline) in the seawater, discharged effluent and sediment samples, respectively. The concentrations of antibiotics in the water phase were correlated positively with chemical oxygen demand and nitrate. The source analysis indicated that untreated domestic sewage was the primary source of antibiotics in the study region. Fluoroquinolones showed strong sorption capacity onto sediments due to their high pseudo-partitioning coefficients. Risk assessment indicated that oxytetracycline, norfloxacin and erythromycin–H 2 O posed high risks to aquatic organisms

  4. Analysis of beak morphometry of the horned octopus Eledone cirrhosa (Cephalopoda: Octopoda in the Thracian Sea (NE Mediterranean

    Directory of Open Access Journals (Sweden)

    E. LEFKADITOU

    2004-06-01

    Full Text Available Cephalopod beaks are chitinous structures situated in the buccal mass lying at the base of their arms. Because they are among the few hard structures of cephalopods with high resistance to erosion during digestive process in predator stomachs, the study of the beak morphometry is of major importance for the species taxonomy, as well as, for the size estimation of the cephalopods consumed. In this study new information is provided on the dimensions and pigmentation process of the upper and lower beak of the horned octopus Eledone cirrhosa derived from 67 female and 47 male specimens caught by trawl in the Thracian Sea (NE Mediterranean. The growth of both beaks was allometric in relation to the mantle length and body weight. According to the results of covariance analysis, no difference was found in growth pattern of beaks between sexes. Four degrees of pigmentation were identified in both upper and lower beaks, the darkening process starting in females at a smaller size.

  5. The El Salvador and Philippines Tsunamis of August 2012: Insights from Sea Level Data Analysis and Numerical Modeling

    Science.gov (United States)

    Heidarzadeh, Mohammad; Satake, Kenji

    2014-12-01

    We studied two tsunamis from 2012, one generated by the El Salvador earthquake of 27 August ( Mw 7.3) and the other generated by the Philippines earthquake of 31 August ( Mw 7.6), using sea level data analysis and numerical modeling. For the El Salvador tsunami, the largest wave height was observed in Baltra, Galapagos Islands (71.1 cm) located about 1,400 km away from the source. The tsunami governing periods were around 9 and 19 min. Numerical modeling indicated that most of the tsunami energy was directed towards the Galapagos Islands, explaining the relatively large wave height there. For the Philippines tsunami, the maximum wave height of 30.5 cm was observed at Kushimoto in Japan located about 2,700 km away from the source. The tsunami governing periods were around 8, 12 and 29 min. Numerical modeling showed that a significant part of the far-field tsunami energy was directed towards the southern coast of Japan. Fourier and wavelet analyses as well as numerical modeling suggested that the dominant period of the first wave at stations normal to the fault strike is related to the fault width, while the period of the first wave at stations in the direction of fault strike is representative of the fault length.

  6. Statistical analysis of accident data associated with sea transport (invited paper)

    International Nuclear Information System (INIS)

    Raffestin, D.; Armingaud, F.; Schneider, T.; Delaigue, S.

    1998-01-01

    This analysis, based on Lloyd's database, gives an accurate description of the world fleet and the most severe ship accidents, as well as the frequencies of accident per ship type, accident category and age category. Complementary analyses were achieved using fire accident databases from AEA Technology and the French Bureau Veritas. The results should be used in the perspective of safety assessments of maritime shipments of radioactive material. For this purpose the existence of the regulations of the International Maritime Organisation has to be considered, leading to the introduction of correction factors to these statistical data derived from general cargo-carrying ships. (author)

  7. Analysis of coelom development in the sea urchin Holopneustes purpurescens yielding a deuterostome body plan

    Directory of Open Access Journals (Sweden)

    Valerie B. Morris

    2016-03-01

    Full Text Available An analysis of early coelom development in the echinoid Holopneustes purpurescens yields a deuterostome body plan that explains the disparity between the pentameral plan of echinoderms and the bilateral plans of chordates and hemichordates, the three major phyla of the monophyletic deuterostomes. The analysis shows an early separation into a medial hydrocoele and lateral coelomic mesoderm with an enteric channel between them before the hydrocoele forms the pentameral plan of five primary podia. The deuterostome body plan thus has a single axial or medial coelom and a pair of lateral coeloms, all surrounding an enteric channel, the gut channel. Applied to the phyla, the medial coelom is the hydrocoele in echinoderms, the notochord in chordates and the proboscis coelom in hemichordates: the lateral coeloms are the coelomic mesoderm in echinoderms, the paraxial mesoderm in chordates and the lateral coeloms in hemichordates. The plan fits frog and chick development and the echinoderm fossil record, and predicts genes involved in coelomogenesis as the source of deuterostome macroevolution.

  8. Spatial and temporal analysis of extreme sea level and storm surge events around the coastline of the UK.

    Science.gov (United States)

    Haigh, Ivan D; Wadey, Matthew P; Wahl, Thomas; Ozsoy, Ozgun; Nicholls, Robert J; Brown, Jennifer M; Horsburgh, Kevin; Gouldby, Ben

    2016-12-06

    In this paper we analyse the spatial footprint and temporal clustering of extreme sea level and skew surge events around the UK coast over the last 100 years (1915-2014). The vast majority of the extreme sea level events are generated by moderate, rather than extreme skew surges, combined with spring astronomical high tides. We distinguish four broad categories of spatial footprints of events and the distinct storm tracks that generated them. There have been rare events when extreme levels have occurred along two unconnected coastal regions during the same storm. The events that occur in closest succession (sea level events from happening within 4-8 days. Finally, the 2013/14 season was highly unusual in the context of the last 100 years from an extreme sea level perspective.

  9. Improving capacity of stock assessment for sea turtles: using ocean circulation modeling to inform genetic mixed stock analysis

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Genetic approaches have been useful for assigning stock ID to sea turtles caught as bycatch in fisheries, or determining stock composition at foraging grounds. In...

  10. Natural radionuclides tracing in marine surface waters along the northern coast of Oman Sea by combining the radioactivity analysis, oceanic currents and the SWAN model results

    International Nuclear Information System (INIS)

    Zare, Mohammad Reza; Mostajaboddavati, Mojtaba; Kamali, Mahdi; Tari, Marziyeh; Mosayebi, Sanaz; Mortazavi, Mohammad Seddigh

    2015-01-01

    Highlights: • This study estimates radioactive pollution diffusion in coastline of the Oman Sea. • 36 high volume surface water samples were analyzed using a portable HPGe detector. • Oceanic currents in the northern coast of Oman Sea were investigated. • The spectral wave model SWAN was used for wave parameters simulation. • Currents and preferable wave directions were coupled with higher radioactivity. - Abstract: This study aims to establish a managed sampling plan for rapid estimate of natural radio-nuclides diffusion in the northern coast of the Oman Sea. First, the natural radioactivity analysis in 36 high volume surface water samples was carried out using a portable high-resolution gamma-ray spectrometry. Second, the oceanic currents in the northern coast were investigated. Then, the third generation spectral SWAN model was utilized to simulate wave parameters. Direction of natural radioactivity propagation was coupled with the preferable wave vectors and oceanic currents direction that face to any marine pollution, these last two factors will contribute to increase or decrease of pollution in each grid. The results were indicated that the natural radioactivity concentration between the grids 8600 and 8604 is gathered in the grid 8600 and between the grids 8605 and 8608 is propagated toward middle part of Oman Sea

  11. Magnetic Base Station Deceptions, a magnetovariational analysis along the Ligurian Sea coast, Italy

    Directory of Open Access Journals (Sweden)

    E. Bozzo

    2007-06-01

    Full Text Available Reliability of high resolution airborne and shipborne magnetic surveys depends on accurate removal of temporal variations from the recorded total magnetic field intensity data. At mid latitudes, one or a few base stations are typically located within or near the survey area and are used to monitor and remove time dependent variations. These are usually assumed to be of external origin and uniform throughout the survey area. Here we investigate the influence on the magnetic base station correction of the time varying magnetic field variations generated by internal telluric currents flowing in anomalous regional 2D/3D conductivity structures. The study is based on the statistical analysis of a data set collected by four magnetovariational stations installed in northwestern Italy. The variometer stations were evenly placed with a spacing of about 60 km along a profile roughly parallel to the coastline. They recorded the geomagnetic field from the beginning to the end of April 2005, with a sampling rate of 0.33 Hz. Cross-correlation and coherence analysis applied to a subset of 125 five hours long magnetic events indicates that, for periods longer than 400 s, there is an high correlation between the horizontal magnetic field components at the different stations. This indicates spatial uniformity of the source field and of the induced currents in the 1D Earth. Additionally, the pattern of the induction arrows, estimated from single site transfer functions, reveals a clear electromagnetic signature of the Sestri-Voltaggio line, interpreted as a major regional tectonic boundary. Induced telluric currents flowing through this 2D/3D electrical conductivity discontinuity affect mainly the vertical magnetic component at the closer locations. By comparing this component at near (32 km and far (70 km stations, we have found that the mean value of the power spectra ratio, due to the electromagnetic induced field, is about 1.8 in the frequency

  12. Analysis of calibrated sea clutter and boat reflectivity data at C- and X-band in South African coastal waters

    CSIR Research Space (South Africa)

    Herselman, PLR

    2007-10-01

    Full Text Available datasets of sea clutter returns at different frequencies, range resolutions, grazing angles, look angles and environmental conditions to validate the state-of-the-art sea clutter models on South African coastal seawaters. Secondly, the aim was to record... boat reflectivity datasets for a number of small boats to investigate its detectability with state-of-the-art detectors. This will lead to the development of improved detection algorithms for radar systems employing adaptive dwell times. Figure 1...

  13. Vegetation Analysis in the Red Sea-Eastern Desert Ecotone at the Area between Safaga and South Qusseir, Egypt

    Directory of Open Access Journals (Sweden)

    Mohamed G. Sheded

    2014-12-01

    Full Text Available The current work is concerned with the studying the impact of environmental conditions on the vegetation in the arid ecotone located between Red Sea and Eastern Desert from Safaga to south Qusseir. Ninety eight quadrats inside 13 transects were selected to cover the environmental gradient across the ecotone, from the coastal region to the boundary of Eastern Desert. Forty five species were recorded belonged to 24 different families and 38 genera. The perennial species were 38 while the annuals were seven species. Zygophyllum coccineum had the highest presence value (89.8% followed by Tamarix nilotica (56.1% and Zilla spinosa (51.02%. Chamaephytes and Hemicryptophytes were the most prevailed life-forms. Chrological analysis exhibited that SaharoSindian and Sahro-Sindian with its extension to Sudano-Zambezian elements were the most dominant. TWINSPAN classification technique produced three vegetation groups include nine clusters at the fourth level. These groups identified according to the first and second dominant species as follows: Convolvulus hystrix - Panicum turgidum, Tamarix aphylla - Limonium pruinosum and Nitraria retusa - Tamarix nilotica. DECORANA results indicated a reasonable segregation among these groups along the ordination axis 1 and 2. Vegetation analysis showed that ecotonal clusters have highest number of species/cluster, high species richness and high species turnover. Therefore, the largest group existed in the ecotone (34 species while the desert group contained eight species and the coastal group included three species. Among the estimated soil variables in this study, pH, coarse sand, HCO3-, SO42- , clay and PO43- have the highest effect on species distribution. Sodium adsorption ratio (SAR was the effective factor in detecting the ecotonal species, Aeluropus lagopoides and Limonium pruinosum.

  14. Analysis of multi-scale morphodynamic behaviour of a high energy beach facing the Sea of Japan

    Directory of Open Access Journals (Sweden)

    Harshinie Urmila Karunarathna

    2015-07-01

    Full Text Available Monthly cross shore beach profiles measured at the Ogata Wave Observation pier located in Joetsu-Ogata Coast, Niigata Prefecture, Japan, was analysed to investigate multi-scale morphodynamic beach behaviour. The Ogata beach, facing the Sea of Japan, is subjected to high energy wave conditions with that has a strong winter/summer seasonal signature. The measured beach profiles at the beach show very significant variability where cross-shore movement of shoreline position and lowering of the beach at the location of measurements exceed 20 m and 4 m respectively. The shoreline position seems to follow the seasonal variability of incident wave climate where a correlation coefficient of 0.77 was found between monthly averaged incident significant wave height and the measured monthly shoreline position. During the summer months, the beach variability mostly concentrated to in the sub-tidal part of the profile, while a significant amount of upper beach change was observed during the winter months. The beach profile shape was found to rotate between three different beach states in time; (i concave reflective profile; (ii profile with sub-tidal berm; and (iii gentle, dissipative profile. Empirical Orthogonal Function (EOF analysis of the profiles show that the variability of beach profile shape is dominated by (a upper shoreface steepening; (b sub tidal berm development and dissipation; and (c variability of the overall profile slope, which have some longer than seasonal cyclic signatures. Comparison of temporal EOFs with climate indices such as Southern Oscillation Index and Pacific Decadal Oscillation index shows notable some correlations between profile change and climatic variability in the region. The analysis also shows that the morphological variability of Joetsu-Ogata Coast has similarities and some distinct spatial and temporal differences to beaches of similar kind found elsewhere.

  15. Epithermal neutron activation analysis of major and trace elements in Red Sea scleractinian corals

    International Nuclear Information System (INIS)

    Abdo, S.Y.; Sherif, M.M.; Frontasyeva, M.V.

    2017-01-01

    Five corals belonging to common scleractinian reef-building species, and collected from Gulf of Suez, Egypt were subjected to neutron activation analysis. The content of 26 elements: Na, Mg, Cl, Ca, Sc, Ti, V, Cr, Mn, Fe, Co, Zn, As, Br, Rb, Sr, Sb, I, Cs, Ba, La, Ce, Gd, Hf, Th, and U was experimentally determined. Ca and Sr have the highest content i.e. 38.4-39.5% and 0.73-0.78% respectively while, the content of all other elements was within the ranges reported for the worldwide corals. For a better understanding of the coral exoskeleton elemental content, the partition coefficient calculated for all determined elements showed a wide range of values varying from 2 × 10 -4 in the case of Cl to 2 × 10 3 for Ce and other insoluble elements. Although all corals were collected in the vicinity of the Port Suez no traces of anthropogenic contamination were evidenced. (author)

  16. Methods of trend analysis for atmospheric deposition into the sea; Trendabschaetzung atmosphaerischer Stoffeintraege in die Meere

    Energy Technology Data Exchange (ETDEWEB)

    Kuhbier, P.; Uhlig, S.; Fraenzel, A.; Schick, N.

    2001-02-01

    In order to prevent a considerable deterioration in the detectability of time trends in depositions as a result of fluctuations in the climatic conditions, an adjustment whereby the entry data are recomputed into an 'average' weather conditions appears inevitable. Accordingly, the aim of the project was the development of a concept for the adjustment and trend analysis of depositions including the examination of a number of statistical methods, with the form of the adjustment being the focus of the work. As per this concept, adjustment takes place on the basis of monthly data. The adjusted depositions are then summarized before trend analysis follows on the basis of these adjusted annual depositions. Finally the trend sensitivity of the method is examined as part of a power analysis. A data bank-based software was developed as part of the project in order to carry out the extensive calculations. With this software, the most diverse trend analysis and adjustment methods were realised and tested. It may first of all be noted that the evaluations conducted confirm the practicality of the adjustment concept developed, with various methods being deployable for fixing the adjustment parameter according to the measurement site and parameter concerned. The average reduction in the scatter of the annual depositions vis-'a-vis the non-adjusted depositions is over 40%. This amounts to a substantial improvement in trend sensitivity and makes for a clear reduction in the length of the requisite time series. However, there is no method among the adjustment methods investigated which, considering all the prerequisites, may be regarded as being superior to the other methods. The question as to which form of adjustment yields the most favourable results depends on the pollutants and the site-related conditions in each case. (orig.) [German] Um zu verhindern, dass durch klimatische Schwankungen die Nachweisbarkeit zeitlicher Trends in Depositionen wesentlich

  17. Analysis of toxic trace elements in sea food samples by neutron activation

    International Nuclear Information System (INIS)

    Sarmani, S.; Majid, A.A.; Wood, A.K.; Hamzah, Z.

    1993-01-01

    The contents of toxic and essential trace element were analysed such as As, Hg, Se and Zn by neutron activation analysis in coastal fishes consumed by the general population of Malaysia. The mean values of the elements analysed expressed in mg/kg fresh weight ranged 1.42-5.61, 0.06-0.42, 4.2-20.6, 0.41-1.28 for As, Hg, Zn and Se, respectively. The maximum permissible limit for As in food was set at 1.0 mg/kg under the Malaysian Food Regulations. The results showed that consumption of coastal fishes is not permitted under the regulations, while the levels of Hg, Se and Zn were within the permissible limits. The daily dietary intake of As and Hg at 400 μg and 30 μg respectively are still within the tolerance levels. (author) 9 refs.; 2 tabs

  18. An 11-year analysis of satellite retrievals of dust aerosol over the Red Sea and the Persian Gulf

    Science.gov (United States)

    Banks, Jamie; Brindley, Helen; Schepanski, Kerstin; Stenchikov, Georgiy

    2017-04-01

    As enclosed seas bordering two large desert regions, the Saharan and Arabian deserts, the maritime environments of the Red Sea and the Persian Gulf are heavily influenced by the presence of desert dust aerosol. The inter-annual variability of dust presence over the Red Sea is analysed and presented, with respect to the summer-time latitudinal gradient in dust loading, which is at a maximum in the far south of the Red Sea and at a minimum in the far north. Two satellite aerosol optical depth (AOD) products from the Spinning Enhanced Visible and Infrared Imager (SEVIRI) and the MODerate resolution Imaging Spectroradiometer (MODIS) instruments are used to quantify this loading over the region. Over an eleven-year period from 2005-2015 the July mean SEVIRI AODs at 630 nm vary between 0.48 and 1.45 in the southern half of the Sea, while in the north this varies between 0.22 and 0.66. Inter-retrieval offsets are observed to occur at higher dust loadings, with pronounced positive MODIS-SEVIRI AOD offsets at AODs greater than 1, indicating substantial and systematic differences between the retrievals over the Red Sea at high dust loadings. These differences appear to be influenced in part by the differences in scattering angle range of the satellite measurements, implying that assumptions of particle shape introduce more substantial biases at the highest dust loadings.

  19. Sea Legs

    Science.gov (United States)

    Macdonald, Kenneth C.

    Forty-foot, storm-swept seas, Spitzbergen polar bears roaming vast expanses of Arctic ice, furtive exchanges of forbidden manuscripts in Cold War Moscow, the New York city fashion scene, diving in mini-subs to the sea floor hot srings, life with the astronauts, romance and heartbreak, and invading the last bastions of male exclusivity: all are present in this fast-moving, non-fiction account of one woman' fascinating adventures in the world of marine geology and oceanography.

  20. Baseline analysis of the existing capacities and needs for capacity building for Marine Strategy Framework Directive implementation in the Celtic Seas sub-region.

    OpenAIRE

    Twomey, Sarah; O'Mahony, Cathal

    2013-01-01

    This report evaluates the existing situation in the Celtic Seas sub-region and determines the current state of preparedness for transboundary management of marine ecosystems and MSFD implementation. Recommendations for capacity building are provided through the analysis of the existing conflicts and potential synergies between relevant policies, institutions and information resources for MSFD implementation across the region. This report strives to empower stakeholders through the provision o...

  1. Simulation-Based Analysis of Ship Motions in Short-Crested Irregular Seas

    Directory of Open Access Journals (Sweden)

    Kıvanç Ali ANIL

    2017-03-01

    Full Text Available Demonstration of the seakeeping calculation results other than polar diagrams and Cartesian plots is important during the initial and detail design stages of naval platforms due to the necessity of numerical simulations (time series data for the design and validation of the systems on board. These time series simulations are called as “real time computer experiments”. Similar simulation algorithms for ship motions and wave elevation are also used by ship-handling simulators for realistic visualization. The goal of this paper is to create a basis for the simulation-based analysis of ship motions and wave elevation for future design and validation studies for both the naval platform itself and the systems on board. The focus of this paper is the clarification of the theoretical background of this process, i.e. all formulations required to create and validate a ship motion and wave surface simulation are given in detail. The results of this study may also be used in ship-handling simulators or helicopter landing on ship simulations.

  2. Microbiome analysis of a disease affecting the deep-sea sponge Geodia barretti.

    Science.gov (United States)

    Luter, Heidi M; Bannister, Raymond J; Whalan, Steve; Kutti, Tina; Pineda, Mari-Carmen; Webster, Nicole S

    2017-05-24

    Reports of sponge disease are becoming increasingly frequent, although almost all instances involve shallow-water, tropical species. Here, we describe the first disease affecting the deep-water sponge, Geodia barretti. The disease is characterised by brown/black discolouration of the sponge tissue, extensive levels of tissue disintegration and increased levels of fouling. Disease prevalence was quantified using video survey transects conducted between 100 and 220 meters in Korsfjorden, Norway and the microbial communities of healthy and diseased sponges were compared using 16S rRNA gene sequencing. Highly divergent community profiles were evident between the different health states; with distinct community shifts involving higher relative abundances of Bacteroidetes, Firmicutes and Deltaproteobacteria in diseased individuals. In addition, three Operational Taxonomic Units (OTUs) were exclusively present in diseased individuals and were shared between the disease lesions and the apparently healthy tissue of diseased individuals, suggesting a non-localised infection or dysbiosis. Genomic analysis of the G. barretti microbiome combined with experimental work to assess the mechanisms of infection will further elucidate the role of microorganisms in the disease. © FEMS 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

  3. Optimization of preservation and processing of sea anemones for microbial community analysis using molecular tools.

    Science.gov (United States)

    Rocha, Joana; Coelho, Francisco J R C; Peixe, Luísa; Gomes, Newton C M; Calado, Ricardo

    2014-11-11

    For several years, knowledge on the microbiome associated with marine invertebrates was impaired by the challenges associated with the characterization of bacterial communities. With the advent of culture independent molecular tools it is possible to gain new insights on the diversity and richness of microorganisms associated with marine invertebrates. In the present study, we evaluated if different preservation and processing methodologies (prior to DNA extraction) can affect the bacterial diversity retrieved from snakelocks anemone Anemonia viridis. Denaturing gradient gel electrophoresis (DGGE) community fingerprints were used as proxy to determine the bacterial diversity retrieved (H'). Statistical analyses indicated that preservation significantly affects H'. The best approach to preserve and process A. viridis biomass for bacterial community fingerprint analysis was flash freezing in liquid nitrogen (preservation) followed by the use of a mechanical homogenizer (process), as it consistently yielded higher H'. Alternatively, biomass samples can be processed fresh followed by cell lyses using a mechanical homogenizer or mortar &pestle. The suitability of employing these two alternative procedures was further reinforced by the quantification of the 16S rRNA gene; no significant differences were recorded when comparing these two approaches and the use of liquid nitrogen followed by processing with a mechanical homogenizer.

  4. Motion analysis and trials of the deep sea hybrid underwater glider Petrel-II

    Science.gov (United States)

    Liu, Fang; Wang, Yan-hui; Wu, Zhi-liang; Wang, Shu-xin

    2017-03-01

    A hybrid underwater glider Petrel-II has been developed and field tested. It is equipped with an active buoyancy unit and a compact propeller unit. Its working modes have been expanded to buoyancy driven gliding and propeller driven level-flight, which can make the glider work in strong currents, as well as many other complicated ocean environments. Its maximal gliding speed reaches 1 knot and the propelling speed is up to 3 knots. In this paper, a 3D dynamic model of Petrel-II is derived using linear momentum and angular momentum equations. According to the dynamic model, the spiral motion in the underwater space is simulated for the gliding mode. Similarly the cycle motion on water surface and the depth-keeping motion underwater are simulated for the level-flight mode. These simulations are important to the performance analysis and parameter optimization for the Petrel-II underwater glider. The simulation results show a good agreement with field trials.

  5. Methodological basis of the analysis and forecasting of trend-seasonal fluctuations in navigation maintenance in the sea of Аzov

    Directory of Open Access Journals (Sweden)

    Андрій Олександрович Лисий

    2015-11-01

    Full Text Available The necessity to use trend-seasonal processes analysis and forecasting to manage seaports activities have been shown in the article. The statistic data showing the sea of Аzov ports freight turnover essential reduction in ice conditions is cited. The cited data has shown that in ice conditions the Azov sea ports freight turnover reduces considerably; in case of poor weather conditions and storm warnings the vessels arriving at ports can’t be loaded and unloaded in time. The concept of seasonal prevalence which is understood as regular periodical changes in weather conditions resulting from season change has been defined. Seasonal fluctuations are rather complicated -they are generated in one navigation area, transmitted to others, transformed and keep moving on calling forth subsequent fluctuations and interfering with sea transportation. From the point of view of this analysis seasonal prevalence is expressed in the form of oscillatory processes. In statistical researches seasonal prevalence indices and factors are used to describe seasonal fluctuations. Various models forecasting seasonal time series have been studied. A special approach to forming the information base and, considering all the activities of the port in the ice conditions, meeting the demands of continuous planning and regulation has been developed. Statistical forecasting including all stages of dynamic series processing has been offered and improved: the analysis of seasonal processes and forecasting of a seasonal wave. Such approach to forecasting can be applied to a wide range of the problems concerning the scheduling of fleet and ports

  6. Proper joint analysis of summary association statistics requires the adjustment of heterogeneity in SNP coverage pattern.

    Science.gov (United States)

    Zhang, Han; Wheeler, William; Song, Lei; Yu, Kai

    2017-07-07

    As meta-analysis results published by consortia of genome-wide association studies (GWASs) become increasingly available, many association summary statistics-based multi-locus tests have been developed to jointly evaluate multiple single-nucleotide polymorphisms (SNPs) to reveal novel genetic architectures of various complex traits. The validity of these approaches relies on the accurate estimate of z-score correlations at considered SNPs, which in turn requires knowledge on the set of SNPs assessed by each study participating in the meta-analysis. However, this exact SNP coverage information is usually unavailable from the meta-analysis results published by GWAS consortia. In the absence of the coverage information, researchers typically estimate the z-score correlations by making oversimplified coverage assumptions. We show through real studies that such a practice can generate highly inflated type I errors, and we demonstrate the proper way to incorporate correct coverage information into multi-locus analyses. We advocate that consortia should make SNP coverage information available when posting their meta-analysis results, and that investigators who develop analytic tools for joint analyses based on summary data should pay attention to the variation in SNP coverage and adjust for it appropriately. Published by Oxford University Press 2017. This work is written by US Government employees and is in the public domain in the US.

  7. In vitro antibacterial analysis of phenoloxidase reaction products from the sea cucumber Apostichopus japonicus.

    Science.gov (United States)

    Jiang, Jingwei; Zhou, Zunchun; Dong, Ying; Cong, Cong; Guan, Xiaoyan; Wang, Bai; Chen, Zhong; Jiang, Bei; Yang, Aifu; Gao, Shan; Sun, Hongjuan

    2014-08-01

    Three phenoloxidases (POs) of Apostichopus japonicus, AjPOs (AjPO1, AjPO2 and AjPO3), were partially purified from the coelomocytes with an electrophoretic method, and then employed for the in vitro antibacterial analysis. Using L-3,4-dihydroxyphenylalanine (L-DOPA) as a substrate, AjPO1 and AjPO2-derived compounds inhibited the growth of Vibrio splendidus and Staphylococcus aureus, while AjPO3-derived compounds only inhibited the growth of V. splendidus. When dopamine was used as a substrate, AjPO1 and AjPO3-derived compounds inhibited the growth of V. splendidus and Vibrio harveyi, while AjPO2-derived compounds only inhibited the growth of V. splendidus. Moreover, AjPO1-derived compounds showed stronger inhibition in V. harveyi than AjPO3-derived compounds did. However, all of the three AjPO reaction products showed no inhibitions on the growth of Pseudoalteromonas nigrifaciens, Shewanella baltica, Micrococcus lysodeikticus, Streptococcus dysgalactiae and Nocardiopsis sp. with L-DOPA or dopamine as a substrate. Scanning electron microscope (SEM) observation of V. harveyi treated by AjPOs and dopamine showed that AjPO1-derived compounds resulted in massive bacteriolysis, AjPO2-derived compounds caused no obvious alteration on bacterial morphology, and AjPO3-derived compounds increased the ratio of spheroidal bacteria. All these results suggested that AjPO reaction products derived by L-DOPA and dopamine had different but limited antibacterial spectrum, and the different antibacterial effects observed among three AjPOs resulted from the different reaction products generated by AjPOs with the same substrate. Copyright © 2014 Elsevier Ltd. All rights reserved.

  8. Proteomic Analysis of Plasma from California Sea Lions (Zalophus californianus Reveals Apolipoprotein E as a Candidate Biomarker of Chronic Domoic Acid Toxicosis.

    Directory of Open Access Journals (Sweden)

    Benjamin A Neely

    Full Text Available Domoic acid toxicosis (DAT in California sea lions (Zalophus californianus is caused by exposure to the marine biotoxin domoic acid and has been linked to massive stranding events and mortality. Diagnosis is based on clinical signs in addition to the presence of domoic acid in body fluids. Chronic DAT further is characterized by reoccurring seizures progressing to status epilepticus. Diagnosis of chronic DAT is often slow and problematic, and minimally invasive tests for DAT have been the focus of numerous recent biomarker studies. The goal of this study was to retrospectively profile plasma proteins in a population of sea lions with chronic DAT and those without DAT using two dimensional gel electrophoresis to discover whether individual, multiple, or combinations of protein and clinical data could be utilized to identify sea lions with DAT. Using a training set of 32 sea lion sera, 20 proteins and their isoforms were identified that were significantly different between the two groups (p<0.05. Interestingly, 11 apolipoprotein E (ApoE charge forms were decreased in DAT samples, indicating that ApoE charge form distributions may be important in the progression of DAT. In order to develop a classifier of chronic DAT, an independent blinded test set of 20 sea lions, seven with chronic DAT, was used to validate models utilizing ApoE charge forms and eosinophil counts. The resulting support vector machine had high sensitivity (85.7% with 92.3% negative predictive value and high specificity (92.3% with 85.7% positive predictive value. These results suggest that ApoE and eosinophil counts along with machine learning can perform as a robust and accurate tool to diagnose chronic DAT. Although this analysis is specifically focused on blood biomarkers and routine clinical data, the results demonstrate promise for future studies combining additional variables in multidimensional space to create robust classifiers.

  9. Analysis of potentials and costs of CO{sub 2} storage in the Utsira aquifer in the North Sea

    Energy Technology Data Exchange (ETDEWEB)

    Fidje, Audun; Espegren, Kari; Wangen, Magnus; Seljom, Pernille; Ramirez, Andrea; Hoefnagels, Ric; Wu, Zhenxue; Broek, Machteld van den; Strachan, Neil; Blesl, Markus; Kober, Tom; Grohnheit, Poul Erik; Luethje, Mikael

    2010-10-22

    lower energy prices tend to favor CCS technologies or natural gas technologies. CCS and nuclear appear in the same cost range so, without further limitations impose by policy, these two technologies appear to compete with each other. Further, the deployment of CCS technologies is also influenced by the national electricity supply options and the opportunity for cross-boundary CO{sub 2} transport. For the CO{sub 2} transport to Utsira, three different network layouts have been analysed. The analysis showed that electricity generation structure of the neighboring countries of the North Sea is not influenced by the type of network but rather by climate policies. Different CO{sub 2} infrastructure layouts for the North Sea region primary affect the transported quantities of CO{sub 2} from the Netherlands (acting as a regional hub) to Utsira. However, the different infrastructures options have little impact on the CO{sub 2} storage from the other North Sea countries. (Author)

  10. Proteomic analysis reveals the important roles of alpha-5-collagen and ATP5β during skin ulceration syndrome progression of sea cucumber Apostichopus japonicus.

    Science.gov (United States)

    Zhao, Zelong; Jiang, Jingwei; Pan, Yongjia; Sun, Hongjuan; Guan, Xiaoyan; Gao, Shan; Chen, Zhong; Dong, Ying; Zhou, Zunchun

    2018-03-20

    proteins based on Gene Ontology and Kyoto Encyclopedia of Genes and Genomes, a draft view of how the sea cucumber affected by SUS has been drawn. The common and unique differentially expressed proteins by Venn analysis showed that alpha-5-collagen was down-regulated at all stages of SUS, which had the potential as a target component for the host-directed SUS therapy. In addition, ATP5β, a subunit of mitochondrial ATP synthase, interacting with a variety of proteins with different functions during the SUS progression. This result illustrated that energy production and metabolism could play an important role in the formation of skin ulceration and resistance to pathogens in sea cucumber. The results of this study will be helpful for researchers to gain insights into the complex molecular mechanism of SUS in sea cucumber. Copyright © 2018 Elsevier B.V. All rights reserved.

  11. Two-Year Monitoring of Water Samples from Dam of Iskar and the Black Sea, Bulgaria, by Molecular Analysis: Focus on Mycobacterium spp.

    Directory of Open Access Journals (Sweden)

    Stefan Panaiotov

    2015-06-01

    Full Text Available The coast of the Bulgarian Black Sea is a popular summer holiday destination. The Dam of Iskar is the largest artificial dam in Bulgaria, with a capacity of 675 million m3. It is the main source of tap water for the capital Sofia and for irrigating the surrounding valley. There is a close relationship between the quality of aquatic ecosystems and human health as many infections are waterborne. Rapid molecular methods for the analysis of highly pathogenic bacteria have been developed for monitoring quality. Mycobacterial species can be isolated from waste, surface, recreational, ground and tap waters and human pathogenicity of nontuberculose mycobacteria (NTM is well recognized. The objective of our study was to perform molecular analysis for key-pathogens, with a focus on mycobacteria, in water samples collected from the Black Sea and the Dam of Iskar. In a two year period, 38 water samples were collected—24 from the Dam of Iskar and 14 from the Black Sea coastal zone. Fifty liter water samples were concentrated by ultrafiltration. Molecular analysis for 15 pathogens, including all species of genus Mycobacterium was performed. Our results showed presence of Vibrio spp. in the Black Sea. Rotavirus A was also identified in four samples from the Dam of Iskar. Toxigenic Escherichia coli was present in both locations, based on markers for stx1 and stx2 genes. No detectable amounts of Cryptosporidium were detected in either location using immunomagnetic separation and fluorescence microscopy. Furthermore, mass spectrometry analyses did not detect key cyanobacterial toxins. On the basis of the results obtained we can conclude that for the period 2012–2014 no Mycobacterium species were present in the water samples. During the study period no cases of waterborne infections were reported.

  12. The Use of Surrogate Data in Demographic Population Viability Analysis: A Case Study of California Sea Lions.

    Directory of Open Access Journals (Sweden)

    Claudia J Hernández-Camacho

    Full Text Available Reliable data necessary to parameterize population models are seldom available for imperiled species. As an alternative, data from populations of the same species or from ecologically similar species have been used to construct models. In this study, we evaluated the use of demographic data collected at one California sea lion colony (Los Islotes to predict the population dynamics of the same species from two other colonies (San Jorge and Granito in the Gulf of California, Mexico, for which demographic data are lacking. To do so, we developed a stochastic demographic age-structured matrix model and conducted a population viability analysis for each colony. For the Los Islotes colony we used site-specific pup, juvenile, and adult survival probabilities, as well as birth rates for older females. For the other colonies, we used site-specific pup and juvenile survival probabilities, but used surrogate data from Los Islotes for adult survival probabilities and birth rates. We assessed these models by comparing simulated retrospective population trajectories to observed population trends based on count data. The projected population trajectories approximated the observed trends when surrogate data were used for one colony but failed to match for a second colony. Our results indicate that species-specific and even region-specific surrogate data may lead to erroneous conservation decisions. These results highlight the importance of using population-specific demographic data in assessing extinction risk. When vital rates are not available and immediate management actions must be taken, in particular for imperiled species, we recommend the use of surrogate data only when the populations appear to have similar population trends.

  13. The Use of Surrogate Data in Demographic Population Viability Analysis: A Case Study of California Sea Lions

    Science.gov (United States)

    2015-01-01

    Reliable data necessary to parameterize population models are seldom available for imperiled species. As an alternative, data from populations of the same species or from ecologically similar species have been used to construct models. In this study, we evaluated the use of demographic data collected at one California sea lion colony (Los Islotes) to predict the population dynamics of the same species from two other colonies (San Jorge and Granito) in the Gulf of California, Mexico, for which demographic data are lacking. To do so, we developed a stochastic demographic age-structured matrix model and conducted a population viability analysis for each colony. For the Los Islotes colony we used site-specific pup, juvenile, and adult survival probabilities, as well as birth rates for older females. For the other colonies, we used site-specific pup and juvenile survival probabilities, but used surrogate data from Los Islotes for adult survival probabilities and birth rates. We assessed these models by comparing simulated retrospective population trajectories to observed population trends based on count data. The projected population trajectories approximated the observed trends when surrogate data were used for one colony but failed to match for a second colony. Our results indicate that species-specific and even region-specific surrogate data may lead to erroneous conservation decisions. These results highlight the importance of using population-specific demographic data in assessing extinction risk. When vital rates are not available and immediate management actions must be taken, in particular for imperiled species, we recommend the use of surrogate data only when the populations appear to have similar population trends. PMID:26413746

  14. Updated analysis of flatfish recruitment response to climate variability and ocean conditions in the Eastern Bering Sea

    Science.gov (United States)

    Wilderbuer, Thomas; Stockhausen, William; Bond, Nicholas

    2013-10-01

    This study provides a retrospective analysis of the relationship between physical oceanography, biology and recruitment of three Eastern Bering Sea flatfish stocks: flathead sole (Hippoglossoides elassodon), northern rock sole (Lepidopsetta polyxystra), and arrowtooth flounder (Atheresthes stomias) during the period 1978-2005. Stock assessment model estimates of recruitment and spawning stock size indicate that temporal patterns in productivity are consistent with decadal scale (or shorter) patterns in climate variability, which may influence marine survival during the early life history phases. Density-dependence (through spawning stock size) was statistically significant in a Ricker stock-recruit model of flatfish recruitment that included environmental terms. Wind-driven advection of northern rock sole and flathead sole larvae to favorable nursery grounds was found to coincide with years of above-average recruitment. Ocean forcing of Bristol Bay surface waters during springtime was mostly on-shelf (eastward) during the 1980s and again in the early 2000s, but was off-shelf (westerly) during the 1990s, corresponding with periods of good and poor recruitment, respectively. Finally, the Arctic Oscillation was found to be an important indicator of arrowtooth flounder productivity. Model results were applied to IPCC (Intergovernmental Panel on Climate Change) future springtime wind scenarios to predict the future impact of climate on northern rock sole productivity and indicated that a moderate future increase in recruitment might be expected because the climate trends favor on-shelf transport but that density-dependence will dampen this effect such that northern rock sole abundance will not be substantially affected by climate change.

  15. Sea level trends in South East Asian Seas (SEAS)

    Science.gov (United States)

    Strassburg, M. W.; Hamlington, B. D.; Leben, R. R.; Manurung, P.; Lumban Gaol, J.; Nababan, B.; Vignudelli, S.; Kim, K.-Y.

    2014-10-01

    Southeast Asian Seas (SEAS) span the largest archipelago in the global ocean and provide a complex oceanic pathway connecting the Pacific and Indian Oceans. The SEAS regional sea level trends are some of the highest observed in the modern satellite altimeter record that now spans almost two decades. Initial comparisons of global sea level reconstructions find that 17 year sea level trends over the past 60 years exhibit good agreement in areas and at times of strong signal to noise associated decadal variability forced by low frequency variations in Pacific trade winds. The SEAS region exhibits sea level trends that vary dramatically over the studied time period. This historical variation suggests that the strong regional sea level trends observed during the modern satellite altimeter record will abate as trade winds fluctuate on decadal and longer time scales. Furthermore, after removing the contribution of the Pacific Decadal Oscillation (PDO) to sea level trends in the past twenty years, the rate of sea level rise is greatly reduced in the SEAS region. As a result of the influence of the PDO, the SEAS regional sea level trends during 2010s and 2020s are likely to be less than the global mean sea level (GMSL) trend if the observed oscillations in wind forcing and sea level persist. Nevertheless, long-term sea level trends in the SEAS will continue to be affected by GMSL rise occurring now and in the future.

  16. Analysis of L-band radiometric data over the Mediterranean Sea from the SMOS Validation Rehearsal campaign

    Science.gov (United States)

    Gabarro, C.; Talone, M.; Font, J.

    2009-04-01

    L-band radiometric data obtained with a real aperture airborne radiometer during SMOS validation Rehearsal campaign (April-May 2008) over the NW Mediterranean Sea have been analysed. EMIRAD, a fully polarimetric radiometer developed by the Technical University of Denmark operating in the 1400 - 1427 MHz band, was mounted on board a Skyvan aircraft from the Helsinki University of Technology. Two antennas were used: one facing nadir with 37.6° full aperture at half-power; and one placed towards the rear of the aircraft at 40° zenith angle with 30.6° full aperture at half-power. Two transit flights over the sea from Marseille to Valencia (19 April 2008) and from Valencia to Marseille (3 May 2008) have been studied. Two meteorological and oceanographic buoys were moored 40 Km offshore in front of Tarragona and were overflown during these transits. Additionally, information on sea surface temperature (SST) and sea surface salinity (SSS) was obtained from operational model outputs (Mediterranean Forecasting System - Mediterranean Operational Oceanography Network) and wind speed from QuikSCAT. Measured brightness temperatures (Tb) have been compared with modelled Tb, using a semi-empirical emissivity model: Klein and Swift model is used to define the dielectric constant and Hollinger model for the rough sea emissivity contribution. Comparisons show that in general measured Tb variability fits with modelled variability, although a bias is observed in the aft V channel.

  17. Revised paleoenvironmental analysis of the Holocene portion of the Barbados sea-level record: Cobbler's Reef revisited

    Science.gov (United States)

    Toscano, Marguerite A.

    2016-06-01

    Sample elevations corrected for tectonic uplift and assessed relative to local modeled sea levels provide a new perspective on paleoenvironmental history at Cobbler's Reef, Barbados. Previously, 14C-dated surface samples of fragmented Acropora palmata plotted above paleo sea level based on their present (uplifted) elevations, suggesting supratidal rubble deposited during a period of extreme storms (4500-3000 cal BP), precipitating reef demise. At several sites, however, A. palmata persisted, existing until ~370 cal BP. Uplift-corrected A. palmata sample elevations lie below the western Atlantic sea-level curve, and ~2 m below ICE-6G-modeled paleo sea level, under slow rates of sea-level rise, negating the possibility that Cobbler's Reef is a supratidal storm ridge. Most sites show limited age ranges from corals likely damaged/killed on the reef crest, not the mixed ages of rubble ridges, strongly suggesting the reef framework died off in stages over 6500 yr. Reef crest death assemblages invoke multiple paleohistoric causes, from ubiquitous hurricanes to anthropogenic impacts. Comparison of death assemblage ages to dated regional paleotempestological sequences, proxy-based paleotemperatures, recorded hurricanes, tsunamis, European settlement, deforestation, and resulting turbidity, reveals many possible factors inimical to the survival of A. palmata along Cobbler's Reef.

  18. Projected sea level rise, gyre circulation and water mass formation in the western North Pacific: CMIP5 inter-model analysis

    Science.gov (United States)

    Terada, Mio; Minobe, Shoshiro

    2018-06-01

    Future changes in the dynamic sea level (DSL), which is defined as sea-level deviation from the global mean sea level, is investigated over the North Pacific, by analyzing data from the Coupled Model Intercomparison Project Phase 5. The analysis provides more comprehensive descriptions of DSL responses to the global warming in this region than available from previous studies, by using surface and subsurface data until the year 2300 under middle and high greenhouse-gas emission scenarios. The DSL changes in the North Pacific are characterized by a DSL rise in the western North Pacific around the Kuroshio Extension (KE), as also reported by previous studies. Subsurface density analysis indicates that DSL rise around the KE is associated with decrease in density of subtropical mode water (STMW) and with northward KE migration, the former (latter) of which is relatively strong between 2000 and 2100 for both RCP4.5 and RCP8.5 (between 2100 and 2300 for RCP8.5). The STMW density decrease is related to large heat uptake to the south and southeast of Japan, while the northward KE migration is associated with the poleward shift of the wind stress field. These features are commonly found in multi-model ensemble means and the relations among representative quantities produced by different climate models.

  19. SeaWiFS technical report series. Volume 4: An analysis of GAC sampling algorithms. A case study

    Science.gov (United States)

    Yeh, Eueng-Nan (Editor); Hooker, Stanford B. (Editor); Hooker, Stanford B. (Editor); Mccain, Charles R. (Editor); Fu, Gary (Editor)

    1992-01-01

    The Sea-viewing Wide Field-of-view Sensor (SeaWiFS) instrument will sample at approximately a 1 km resolution at nadir which will be broadcast for reception by realtime ground stations. However, the global data set will be comprised of coarser four kilometer data which will be recorded and broadcast to the SeaWiFS Project for processing. Several algorithms for degrading the one kilometer data to four kilometer data are examined using imagery from the Coastal Zone Color Scanner (CZCS) in an effort to determine which algorithm would best preserve the statistical characteristics of the derived products generated from the one kilometer data. Of the algorithms tested, subsampling based on a fixed pixel within a 4 x 4 pixel array is judged to yield the most consistent results when compared to the one kilometer data products.

  20. A comparative analysis of the sea ice freeboard from CryoSat. CryoVEx and IceBridge

    DEFF Research Database (Denmark)

    Kildegaard Rose, Stine; Connor, Laurence N.; Farrell, Sinead L.

    The CryoSat Validation Experiment (CryoVEx) has been conducted by ESA, to examine the uncertainties in the satellite measurement of e.g. sea ice thickness. In this study, we aim to estimate the sea ice freeboard from CryoSat-2, and compare it with the high-resolution Airborne Laser Scanner (ALS......) measurements collected along CryoSat-2 ground tracks from the CryoVEx 2012 campaign, together with NASA’s Operation IceBridge data. We will use the CryoSat SAR data level 1b (L1b) to discriminate the leads and from this, estimate the sea ice freeboard. Furthermore, we are looking at the CryoSat level 2 (L2...

  1. High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus

    Directory of Open Access Journals (Sweden)

    Gomes Paula

    2010-10-01

    Full Text Available Abstract Background Bathymodiolus azoricus is a deep-sea hydrothermal vent mussel found in association with large faunal communities living in chemosynthetic environments at the bottom of the sea floor near the Azores Islands. Investigation of the exceptional physiological reactions that vent mussels have adopted in their habitat, including responses to environmental microbes, remains a difficult challenge for deep-sea biologists. In an attempt to reveal genes potentially involved in the deep-sea mussel innate immunity we carried out a high-throughput sequence analysis of freshly collected B. azoricus transcriptome using gills tissues as the primary source of immune transcripts given its strategic role in filtering the surrounding waterborne potentially infectious microorganisms. Additionally, a substantial EST data set was produced and from which a comprehensive collection of genes coding for putative proteins was organized in a dedicated database, "DeepSeaVent" the first deep-sea vent animal transcriptome database based on the 454 pyrosequencing technology. Results A normalized cDNA library from gills tissue was sequenced in a full 454 GS-FLX run, producing 778,996 sequencing reads. Assembly of the high quality reads resulted in 75,407 contigs of which 3,071 were singletons. A total of 39,425 transcripts were conceptually translated into amino-sequences of which 22,023 matched known proteins in the NCBI non-redundant protein database, 15,839 revealed conserved protein domains through InterPro functional classification and 9,584 were assigned with Gene Ontology terms. Queries conducted within the database enabled the identification of genes putatively involved in immune and inflammatory reactions which had not been previously evidenced in the vent mussel. Their physical counterpart was confirmed by semi-quantitative quantitative Reverse-Transcription-Polymerase Chain Reactions (RT-PCR and their RNA transcription level by quantitative PCR (q

  2. Analysis of tourism destination image influence on satisfaction e loyalty to sun and sea tourism destinations: A study in Natal/RN

    Directory of Open Access Journals (Sweden)

    Márcio Marreiro das Chagas

    2013-08-01

    Full Text Available This paper analysis tourism destination image influences on satisfaction and loyalty to Sun and Sea tourism destinations, investigating Natal/RN as a case. Quality dimensions were control variables. Therefore, it was conducted an exploratory and descriptive research with quantitative analytical approach. Data collection was performed by a questionnaire addressed to International tourists at the Augusto Severo International Airport. The composition was a simple random sampling by reaching the final number of 300 international tourists interviewed. Among the main results, it was noted that nine are the dimensions of perceived Quality of Sun and Sea segment, it means, Beaches, Public Equipment, Restaurants, Transportation, Information and Finance Services, Hotel Equipment, Diversity of Restaurants and Food, Complementary Services and Access to the hotel and Tourism Attractions, Urban and Natural Scenery. From the results, it was concluded that tourism destination image influences satisfaction and loyalty. Moreover, quality seems to be other important dimension for the satisfaction and loyalty process.

  3. Analysis of Thematic Mapper data for studying the suspended matter distribution in the coastal area of the German Bight (North Sea)

    Science.gov (United States)

    Doerffer, R.; Fischer, J.; Stoessel, M.; Brockmann, C.; Grassl, H.

    1989-01-01

    Thematic Mapper data were analyzed with respect to its capability for mapping the complex structure and dynamics of suspended matter distribution in the coastal area of the German Bight (North Sea). Three independent pieces of information were found by factor analysis of all seven TM channels: suspended matter concentration, atmospheric scattering, and sea surface temperature. For the required atmospheric correction, the signal-to-noise ratios of Channels 5 and 7 have to be improved by averaging over 25 x 25 pixels, which also makes it possible to monitor the aerosol optical depth and aerosol type over cloud-free water surfaces. Near-surface suspended matter concentrations may be detected with an accuracy of factor less than 2 by using an algorithm derived from radiative transfer model calculation. The patchiness of suspended matter and its relation to underwater topography was analyzed with autocorrelation and cross-correlation.

  4. Investigating Arctic Sea Ice Survivability in the Beaufort Sea

    Directory of Open Access Journals (Sweden)

    Matthew Tooth

    2018-02-01

    Full Text Available Arctic sea ice extent has continued to decline in recent years, and the fractional coverage of multi-year sea ice has decreased significantly during this period. The Beaufort Sea region has been the site of much of the loss of multi-year sea ice, and it continues to play a large role in the extinction of ice during the melt season. We present an analysis of the influence of satellite-derived ice surface temperature, ice thickness, albedo, and downwelling longwave/shortwave radiation as well as latitude and airborne snow depth estimates on the change in sea ice concentration in the Beaufort Sea from 2009 to 2016 using a Lagrangian tracking database. Results from this analysis indicate that parcels that melt during summer in the Beaufort Sea reside at lower latitudes and have lower ice thickness at the beginning of the melt season in most cases. The influence of sea ice thickness and snow depth observed by IceBridge offers less conclusive results, with some years exhibiting higher thicknesses/depths for melted parcels. Parcels that melted along IceBridge tracks do exhibit lower latitudes and ice thicknesses, however, which indicates that earlier melt and breakup of ice may contribute to a greater likelihood of extinction of parcels in the summer.

  5. The deeper structure of the southern Dead Sea basin derived from neural network analysis of velocity and attenuation tomography

    Science.gov (United States)

    Braeuer, Benjamin; Haberland, Christian; Bauer, Klaus; Weber, Michael

    2014-05-01

    The Dead Sea basin is a pull-apart basin at the Dead Sea transform fault, the boundary between the African and the Arabian plates. Though the DSB has been studied for a long time, the available knowledge - based mainly on surface geology, drilling and seismic reflection surveys - gives only a partial picture of its shallow structure. Therefore, within the framework of the international DESIRE (DEad Sea Integrated REsearch) project, a dense temporary local seismological network was operated in the southern Dead Sea area. Within 18 month of recording 650 events were detected. In addition to an already published tomography study revealing the distribution of P velocities and the Vp/Vs ratios a 2D P-wave attenuation tomography (parameter Qp) was performed. The neural network technique of Self-organizing maps (SOM) is used for the joint interpretation of these three parameters (Vp, Vp/Vs, Qp). The resulting clusters in the petrophysical parameter space are assigned to the main lithological units below the southern part of the Dead Sea basin: (1) The basin sediments characterized by strong attenuation, high vp/vs ratios and low P velocities. (2) The pre-basin sediments characterized by medium to strong attenuation, low Vp/Vs ratios and medium P velocities. (3) The basement characterized by low to moderate attenuation, medium vp/vs ratios and high P velocities. Thus, the asymmetric southern Dead Sea basin is filled with basin sediments down to depth of 7 to 12 km. Below the basin sediments, the pre-basin sediments are extending to a depth between 13 and 18 km.

  6. The use of a chelating resin column for preconcentration of trace elements from sea-water in their determination by neutron-activation analysis

    International Nuclear Information System (INIS)

    Lee, C.; Kim, N.B.; Lee, I.C.; Chung, K.S.

    1977-01-01

    A Chelex-100 resin column has been employed for the preliminary concentration of trace elements in water samples before their determination by neutron-activation analysis. The column filled with a 1 : 1 mixture of the resin (50 to 100 mesh) and Pyrex glass powder of the same mesh size, is shown to maintain a constant flow-rate and give reproducible results. By a combination of preconcentration and neutron-activation analysis it is possible to determine Ba, Ca, Cd, Ce, Co, Cr, Cu, Fe, La, Mg, Mn, Sc, U, V and Zn in sea-water and/or fresh water simultaneously at the parts per milliard level. (author)

  7. The lowering of sea surface temperature in the east central Arabian sea associated with a cyclone

    Digital Repository Service at National Institute of Oceanography (India)

    Murty, V.S.N.; Rao, D.P.; Sastry, J.S.

    An analysis of thermal Structure in the East Central Arabian Sea associated with a moderate cyclone is presented. The heat storage and the heat budget components have been computed. Under the influence of the cyclone the Sea Surface Temperature (SST...

  8. A statistical approach to coastal upwelling in the Baltic Sea based on the analysis of satellite data for 1990-2009

    Directory of Open Access Journals (Sweden)

    Andreas Lehmann

    2012-06-01

    Full Text Available A statistical analysis of Baltic Sea upwelling has been carried out to cover, for the first time, the entire sea area for the period 1990-2009. Weekly composite SST maps based on NOAA/AVHRR satellite data were used to evaluate the location and frequency of upwelling. The results obtained were analysed and compared with earlier studies with excellent agreement. Our study enables the most intense upwelling areas in the entire Baltic Sea to be evaluated. According to the analysis of 443 SST maps, the most common upwelling regions are found off the Swedish south and east coasts (frequency 10-25%, the Swedish coast of the Bothnian Bay (16%, the southern tip of Gotland (up to 15%, and the Finnish coast of the Gulf of Finland (up to 15%. Pronounced upwelling also occurs off the Estonian coast and the Baltic east coast (up to 15%, the Polish coast and the west coast of Rügen (10-15%; otherwise the upwelling frequency was between 5 and 10%. Additionally, simulated SST distributions derived from a Baltic Sea numerical model were analysed for the same period. Furthermore, at specific positions close to the coastline, surface winds based on the SMHI meteorological data base were analysed for the same 20-year period. Wind components parallel to the coast were discriminated into favourable and unfavourable winds forcing upwelling. The obtained frequencies of upwelling-favourable winds fit very well the observed upwelling frequencies derived from satellite SST maps. A positive trend of upwelling frequencies along the Swedish east coast and the Finnish coast of the Gulf of Finland was calculated for the period 1990-2009.

  9. Metagenomic analysis and metabolite profiling of deep-sea sediments from the Gulf of Mexico following the Deepwater Horizon oil spill

    Directory of Open Access Journals (Sweden)

    Nikole Elizabeth Kimes

    2013-03-01

    Full Text Available Marine subsurface environments, such as deep-sea sediments, house abundant and diverse microbial communities that are believed to influence large-scale geochemical processes. These processes include the biotransformation and mineralization of numerous petroleum constituents. Thus, microbial communities in the Gulf of Mexico are thought to be responsible for the intrinsic bioremediation of crude oil released by the Deepwater Horizon (DWH oil spill. While hydrocarbon contamination is known to enrich for aerobic, oil-degrading bacteria in deep-seawater habitats, relatively little is known about the response of communities in deep-sea sediments, where low oxygen levels may hinder such a response. Here, we examined the hypothesis that increased hydrocarbon exposure results in an altered sediment microbial community structure that reflects the prospects for oil biodegradation under the prevailing conditions. We explore this hypothesis using metagenomic analysis and metabolite profiling of deep-sea sediment samples following the DWH oil spill. The presence of aerobic microbial communities and associated functional genes was consistent among all samples, whereas, a greater number of Deltaproteobacteria and anaerobic functional genes were found in sediments closest to the DWH blowout site. Metabolite profiling also revealed a greater number of putative metabolites in sediments surrounding the blowout zone relative to a background site located 127 km away. The mass spectral analysis of the putative metabolites revealed that alkylsuccinates remained below detection levels, but a homologous series of benzylsuccinates (with carbon chain lengths from 5 to 10 could be detected. Our findings suggest that increased exposure to hydrocarbons enriches for Deltaproteobacteria, which are known to be capable of anaerobic hydrocarbon metabolism. We also provide evidence for an active microbial community metabolizing aromatic hydrocarbons in deep-sea sediments of the

  10. Ecological effects of full and partial protection in the crowded Mediterranean Sea: a regional meta-analysis

    DEFF Research Database (Denmark)

    Giakoumi, Sylvaine; Scianna, Claudia; Plass-Johnson, Jeremiah Grahm

    2017-01-01

    the relationships between the level of protection and MPA size, age, and enforcement. Results revealed significant positive effects of protection for fisheries target species and negative effects for urchins as their predators benefited from protection. Full protection provided stronger effects than partial...... to inform decisions. In the human-dominated Mediterranean Sea, fully protected areas occupy only 0.04% of its surface. We evaluated the impacts of full and partial protection on biomass and density of fish assemblages, some commercially important fishes, and sea urchins in 24 Mediterranean MPAs. We explored...

  11. Draft genome analysis of Dietzia sp. 111N12-1, isolated from the South China Sea with bioremediation activity.

    Science.gov (United States)

    Yang, Shanjun; Yu, Mingjia; Chen, Jianming

    Dietzia sp. 111N12-1, isolated from the seawater of South China Sea, shows strong petroleum hydrocarbons degradation activity. Here, we report the draft sequence of approximately 3.7-Mbp genome of this strain. To the best of our knowledge, this is the first genome sequence of Dietzia strain isolated from the sea. The genome sequence may provide fundamental molecular information on elucidating the metabolic pathway of hydrocarbons degradation in this strain. Copyright © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. All rights reserved.

  12. Functional analysis of Steller’s sea cow (Hydrodamalis gigas) hemoglobin provides new insights to cold adaptation

    DEFF Research Database (Denmark)

    Signore, Anthony V.; Fago, Angela; Weber, Roy E.

    sensitivity that can maintain adequate O2 delivery at low temperatures. This phenotype has primarily been attributed to the binding of additional allosteric effectors to the Hb moiety relative to those of non-cold adapted species. However, we find that Hb from the extinct Steller’s sea cow binds fewer...... paenungulate Hbs (woolly mammoth, Asian elephant, Steller’s sea cow, dugong, ancestral dugongid, and Florida manatee) in the presence of serially increasing Cl- and 2,3-diphosphoglycerate (DPG) concentrations at both 25 and 37C. Quantitation of effector binding revealed that the number of oxygenation...

  13. Regional intensity-duration-frequency analysis in the Eastern Black Sea Basin, Turkey, by using L-moments and regression analysis

    Science.gov (United States)

    Ghiaei, Farhad; Kankal, Murat; Anilan, Tugce; Yuksek, Omer

    2018-01-01

    The analysis of rainfall frequency is an important step in hydrology and water resources engineering. However, a lack of measuring stations, short duration of statistical periods, and unreliable outliers are among the most important problems when designing hydrology projects. In this study, regional rainfall analysis based on L-moments was used to overcome these problems in the Eastern Black Sea Basin (EBSB) of Turkey. The L-moments technique was applied at all stages of the regional analysis, including determining homogeneous regions, in addition to fitting and estimating parameters from appropriate distribution functions in each homogeneous region. We studied annual maximum rainfall height values of various durations (5 min to 24 h) from seven rain gauge stations located in the EBSB in Turkey, which have gauging periods of 39 to 70 years. Homogeneity of the region was evaluated by using L-moments. The goodness-of-fit criterion for each distribution was defined as the ZDIST statistics, depending on various distributions, including generalized logistic (GLO), generalized extreme value (GEV), generalized normal (GNO), Pearson type 3 (PE3), and generalized Pareto (GPA). GLO and GEV determined the best distributions for short (5 to 30 min) and long (1 to 24 h) period data, respectively. Based on the distribution functions, the governing equations were extracted for calculation of intensities of 2, 5, 25, 50, 100, 250, and 500 years return periods (T). Subsequently, the T values for different rainfall intensities were estimated using data quantifying maximum amount of rainfall at different times. Using these T values, duration, altitude, latitude, and longitude values were used as independent variables in a regression model of the data. The determination coefficient ( R 2) value indicated that the model yields suitable results for the regional relationship of intensity-duration-frequency (IDF), which is necessary for the design of hydraulic structures in small and

  14. Selective hydride generation- cryotrapping- ICP-MS for arsenic speciation analysis at picogram levels: analysis of river and sea water reference materials and human bladder epithelial cells

    Science.gov (United States)

    Matoušek, Tomáš; Currier, Jenna M.; Trojánková, Nikola; Saunders, R. Jesse; Ishida, María C.; González-Horta, Carmen; Musil, Stanislav; Mester, Zoltán; Stýblo, Miroslav; Dědina, Jiří

    2013-01-01

    An ultra sensitive method for arsenic (As) speciation analysis based on selective hydride generation (HG) with preconcentration by cryotrapping (CT) and inductively coupled plasma- mass spectrometry (ICP-MS) detection is presented. Determination of valence of the As species is performed by selective HG without prereduction (trivalent species only) or with L-cysteine prereduction (sum of tri- and pentavalent species). Methylated species are resolved on the basis of thermal desorption of formed methyl substituted arsines after collection at −196°C. Limits of detection of 3.4, 0.04, 0.14 and 0.10 pg mL−1 (ppt) were achieved for inorganic As, mono-, di- and trimethylated species, respectively, from a 500 μL sample. Speciation analysis of river water (NRC SLRS-4 and SLRS-5) and sea water (NRC CASS-4, CASS-5 and NASS-5) reference materials certified to contain 0.4 to 1.3 ng mL−1 total As was performed. The concentrations of methylated As species in tens of pg mL−1 range obtained by HG-CT-ICP-MS systems in three laboratories were in excellent agreement and compared well with results of HG-CT-atomic absorption spectrometry and anion exchange liquid chromatography- ICP-MS; sums of detected species agreed well with the certified total As content. HG-CT-ICP-MS method was successfully used for analysis of microsamples of exfoliated bladder epithelial cells isolated from human urine. Here, samples of lysates of 25 to 550 thousand cells contained typically tens pg up to ng of iAs species and from single to hundreds pg of methylated species, well within detection power of the presented method. A significant portion of As in the cells was found in the form of the highly toxic trivalent species. PMID:24014931

  15. Sea Ice

    Science.gov (United States)

    Perovich, D.; Gerland, S.; Hendricks, S.; Meier, Walter N.; Nicolaus, M.; Richter-Menge, J.; Tschudi, M.

    2013-01-01

    During 2013, Arctic sea ice extent remained well below normal, but the September 2013 minimum extent was substantially higher than the record-breaking minimum in 2012. Nonetheless, the minimum was still much lower than normal and the long-term trend Arctic September extent is -13.7 per decade relative to the 1981-2010 average. The less extreme conditions this year compared to 2012 were due to cooler temperatures and wind patterns that favored retention of ice through the summer. Sea ice thickness and volume remained near record-low levels, though indications are of slightly thicker ice compared to the record low of 2012.

  16. Initial assessment and treatment of refugees in the Mediterranean Sea (a secondary data analysis concerning the initial assessment and treatment of 2656 refugees rescued from distress at sea in support of the EUNAVFOR MED relief mission of the EU).

    Science.gov (United States)

    Kulla, M; Josse, F; Stierholz, M; Hossfeld, B; Lampl, L; Helm, M

    2016-05-20

    As a part of the European Union Naval Force - Mediterranean Operation Sophia (EUNAVFOR Med), the Federal Republic of Germany is contributing to avoid further loss of lives at sea by supplying two naval vessels. In the study presented here we analyse the medical requirements of such rescue missions, as well as the potential benefits of various additional monitoring devices in identifying sick/injured refugees within the primary onboard medical assessment process. Retrospective analysis of the data collected between May - September 2015 from a German Naval Force frigate. Initial data collection focused on the primary medical assessment and treatment process of refugees rescued from distress at sea. Descriptive statistics, uni- and multivariate analysis were performed. The study has received a positive vote from the Ethics Commission of the University of Ulm, Germany (request no. 284/15) and has been registered in the German Register of Clinical Studies (no. DRKS00009535). A total of 2656 refugees had been rescued. 16.9 % of them were classified as "medical treatment required" within the initial onboard medical assessment process. In addition to the clinical assessment by an emergency physician, pulse rate (PR), core body temperature (CBT) and oxygen saturation (SpO2) were evaluated. Sick/injured refugees displayed a statistically significant higher PR (114/min vs. 107/min; p refugee boats. A cut-off value of clinical importance could not be found. Predominant diagnoses have been dermatological diseases (55.4), followed by internal diseases (27.7) and trauma (12.1 %). None of the refugees classified as "healthy" within the primary medical assessment process changed to "medical treatment required" during further observation. The initial medical assessment by an emergency physician has proved successful. PR, CBT and SpO2 didn't have any clinical impact to improve the identification of sick/injured refugees within the primary onboard assessment process.

  17. Analysis of Fe, Ca, Ti, Ba, Ce, Zr and La element in the Sea sediment at Muria peninsula by X RF method

    International Nuclear Information System (INIS)

    Sukirno and Sri Murniasih

    2009-01-01

    he analysis of metals (Fe, Ca, Ti, Ba, Ce, Zr and La) in the sea sediment environmental samples at Muria peninsula has been carried out with X-Ray Fluorescence (XRF) method. The aim of this analysis is to know the distribution metals which accommodate the recent environmental data in supporting the license of site and Environmental Impact Assessment (EIA) for the Nuclear Power Plants (NPP). Samples taken preparation and analysis based on the procedures of environmental analysis. The result analysis that contents of mayor elements in 7 sea sediment location of sampling were Ca, Ti and Fe with concentration are (6.74 – 11.69 ) %; (0.74 – 6.89 ) % and (0.45 -1.94 ) % successively; while minor elements were Ba, Ce, Zr and La with concentration are 451.4 – 1331.6 ) mg/kg; (201.8 – 427.3) mg/kg; (192.3 – 338.5) mg/kg dan (171.7 – 298.4) mg/kg. The statistic test result shows that sampling location there is a significant difference all of element with the level significant of 95 %. (author)

  18. Sea level change

    Digital Repository Service at National Institute of Oceanography (India)

    Church, J.A.; Clark, P.U.; Cazenave, A.; Gregory, J.M.; Jevrejeva, S.; Levermann, A.; Merrifield, M.A.; Milne, G.A.; Nerem, R.S.; Nunn, P.D.; Payne, A.J.; Pfeffer, W.T.; Stammer, D.; Unnikrishnan, A.S.

    This chapter considers changes in global mean sea level, regional sea level, sea level extremes, and waves. Confidence in projections of global mean sea level rise has increased since the Fourth Assessment Report (AR4) because of the improved...

  19. Underestimated effect sizes in GWAS: fundamental limitations of single SNP analysis for dichotomous phenotypes.

    Directory of Open Access Journals (Sweden)

    Sven Stringer

    Full Text Available Complex diseases are often highly heritable. However, for many complex traits only a small proportion of the heritability can be explained by observed genetic variants in traditional genome-wide association (GWA studies. Moreover, for some of those traits few significant SNPs have been identified. Single SNP association methods test for association at a single SNP, ignoring the effect of other SNPs. We show using a simple multi-locus odds model of complex disease that moderate to large effect sizes of causal variants may be estimated as relatively small effect sizes in single SNP association testing. This underestimation effect is most severe for diseases influenced by numerous risk variants. We relate the underestimation effect to the concept of non-collapsibility found in the statistics literature. As described, continuous phenotypes generated with linear genetic models are not affected by this underestimation effect. Since many GWA studies apply single SNP analysis to dichotomous phenotypes, previously reported results potentially underestimate true effect sizes, thereby impeding identification of true effect SNPs. Therefore, when a multi-locus model of disease risk is assumed, a multi SNP analysis may be more appropriate.

  20. Core genome conservation of Staphylococcus haemolyticus limits sequence based population structure analysis.

    Science.gov (United States)

    Cavanagh, Jorunn Pauline; Klingenberg, Claus; Hanssen, Anne-Merethe; Fredheim, Elizabeth Aarag; Francois, Patrice; Schrenzel, Jacques; Flægstad, Trond; Sollid, Johanna Ericson

    2012-06-01

    The notoriously multi-resistant Staphylococcus haemolyticus is an emerging pathogen causing serious infections in immunocompromised patients. Defining the population structure is important to detect outbreaks and spread of antimicrobial resistant clones. Currently, the standard typing technique is pulsed-field gel electrophoresis (PFGE). In this study we describe novel molecular typing schemes for S. haemolyticus using multi locus sequence typing (MLST) and multi locus variable number of tandem repeats (VNTR) analysis. Seven housekeeping genes (MLST) and five VNTR loci (MLVF) were selected for the novel typing schemes. A panel of 45 human and veterinary S. haemolyticus isolates was investigated. The collection had diverse PFGE patterns (38 PFGE types) and was sampled over a 20 year-period from eight countries. MLST resolved 17 sequence types (Simpsons index of diversity [SID]=0.877) and MLVF resolved 14 repeat types (SID=0.831). We found a low sequence diversity. Phylogenetic analysis clustered the isolates in three (MLST) and one (MLVF) clonal complexes, respectively. Taken together, neither the MLST nor the MLVF scheme was suitable to resolve the population structure of this S. haemolyticus collection. Future MLVF and MLST schemes will benefit from addition of more variable core genome sequences identified by comparing different fully sequenced S. haemolyticus genomes. Copyright © 2012 Elsevier B.V. All rights reserved.

  1. Black Sea Bass genetic connectivity

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Microsatellite analysis of black sea bass was undertaken to determine magnitude and direction of mixing of black seabass across the Hatteras boundary, as well as...

  2. Spatial and temporal multiyear sea ice distributions in the Arctic: A neural network analysis of SSM/I data, 1988-2001

    Science.gov (United States)

    Belchansky, G.I.; Douglas, D.C.; Alpatsky, I.V.; Platonov, Nikita G.

    2004-01-01

    Arctic multiyear sea ice concentration maps for January 1988-2001 were generated from SSM/I brightness temperatures (19H, 19V, and 37V) using modified multiple layer perceptron neural networks. Learning data for the neural networks were extracted from ice maps derived from Okean and ERS satellite imagery to capitalize on the stability of active radar multiyear ice signatures. Evaluations of three learning algorithms and several topologies indicated that networks constructed with error back propagation learning and 3-20-1 topology produced the most consistent and physically plausible results. Operational neural networks were developed specifically with January learning data, and then used to estimate daily multiyear ice concentrations from daily-averaged SSM/I brightness temperatures during January. Monthly mean maps were produced for analysis by averaging the respective daily estimates. The 14-year series of January multiyear ice distributions revealed dense and persistent cover in the central Arctic surrounded by expansive regions of highly fluctuating interannual cover. Estimates of total multiyear ice area by the neural network were intermediate to those of other passive microwave algorithms, but annual fluctuations and trends were similar among all algorithms. When compared to Radarsat estimates of multiyear ice concentration in the Beaufort and Chukchi Seas (1997-1999), average discrepancies were small (0.9-2.5%) and spatial coherency was reasonable, indicating the neural network's Okean and ERS learning data facilitated passive microwave inversion that emulated backscatter signatures. During 1988-2001, total January multiyear ice area declined at a significant linear rate of -54.3 x 103 km2/yr-1 (-1.4%/yr-1). The most persistent and extensive decline in multiyear ice concentration (-3.3%/yr-1) occurred in the southern Beaufort and Chukchi Seas. In autumn 1996, a large multiyear ice recruitment of over 106 km2 (mostly in the Siberian Arctic) fully replenished

  3. Coupling otolith microstructure analysis and hydrographic backtracking suggests a mechanism for the 2000s North Sea herring recruitment failure

    DEFF Research Database (Denmark)

    Ross, Stine Dalmann; Payne, Mark; Worsøe Clausen, Lotte

    2012-01-01

    The North Sea autumn spawning herring (Clupea harengus) has, since the 2002 year class, shown an unprecedented sequence of ten years of sharply reduced recruitment, in spite of a high spawning biomass and low fishing mortality. Recent work has identified this reduction in recruitment level (or st...

  4. Grain size analysis of sediments from the northern Andaman Sea: Comparison of laser diffraction and sieve-pipette techniques

    Digital Repository Service at National Institute of Oceanography (India)

    Ramaswamy, V.; Rao, P.S.

    measured with laser diffraction show that 99% of the particles have an upper size range between 4.8 and 7.7 mu m. A calibration relationship between pipette and laser diffraction techniques has been developed for the northern Andaman Sea. A clay particle...

  5. Element availability of bivalve with symbiotic zooxanthellae in coral sea area as studied by multielement profiling analysis

    Science.gov (United States)

    Itoh, A.; Kabe, N.

    2008-12-01

    In coral sea, a characteristic ecosystem is formed by many kinds of marine animals and plants, although seawater is uneutrophic. This may be explained by the fact that various chemical species with bioessentiality are effectively taken and used by lower animals and plants in coral sea area. A symbiotic relationship often found among different animals and plants in this area is considered to be working as one of such processes. However, the specific bioavailability of the elements for the marine animals and plants in coral reef area has not been studied from the viewpoints of trace and ultratrace elements. It is found by the present authors that bivalve with symbiotic zooxanthellae (Tridacna crocea) living on coral reef had relatively higher bio- accumulation factors for many bio-essential elements than other kinds of bivalves, although they live in the uneutrophic sea area. The present authors focused on Tridacna crocea as one of the symbiotic animals. Thus, in the present study, at first, multielement determination of major-to-ultratrace elements (about 20 elements) in each organ of Tridacna crocea with symbiotic zooxanthellae, were carried out by ICP-AES, ICP- MS, and CHN coder. At Second, the specific bioavailability of trace and ultratrace elements in Tridacna crocea was discussed on the multielement data for seawater, seaweeds, and other bivalves in coral sea area.

  6. Iron Fertilization of the Southern Ocean: Regional Simulation and Analysis of C-Sequestration in the Ross Sea

    Energy Technology Data Exchange (ETDEWEB)

    Kevin Arrigo

    2012-03-13

    A modified version of the dynamic 3-dimensional mesoscale Coupled Ice, Atmosphere, and Ocean model (CIAO) of the Ross Sea ecosystem has been used to simulate the impact of environmental perturbations upon primary production and biogenic CO2 uptake. The Ross Sea supports two taxonomically, and spatially distinct phytoplankton populations; the haptophyte Phaeocystis antarctica and diatoms. Nutrient utilization ratios predict that P. antarctica and diatoms will be driven to nitrate and phosphate limitation, respectively. Model and field data have confirmed that the Ross Sea is iron limited with only two-thirds of the macronutrients consumed by the phytoplankton by the end of the growing season. In this study, the CIAO model was improved to simulate a third macronutrient (phosphate), dissolved organic carbon, air-sea gas exchange, and the carbonate system. This enabled us to effectively model pCO2 and subsequently oceanic CO2 uptake via gas exchange, allowing investigations into the affect of alleviating iron limitation on both pCO2 and nutrient drawdown.

  7. Regional and seasonal differences in growth of larval North Sea herring (clupea harengus L.) estimated by otolith microstructure analysis

    DEFF Research Database (Denmark)

    Munk, Peter; Heath, Mike; Skaarup, Bo

    1991-01-01

    The ecology processes of the larval life of autumn-spawned North Sea herring have been studied in a multidisciplinary and internationally coordinated research programme (ACE). The programme focused on larval advection and the importance of the autumn/winter circulation in determining larval distr...

  8. Ship Detection in Gaofen-3 SAR Images Based on Sea Clutter Distribution Analysis and Deep Convolutional Neural Network.

    Science.gov (United States)

    An, Quanzhi; Pan, Zongxu; You, Hongjian

    2018-01-24

    Target detection is one of the important applications in the field of remote sensing. The Gaofen-3 (GF-3) Synthetic Aperture Radar (SAR) satellite launched by China is a powerful tool for maritime monitoring. This work aims at detecting ships in GF-3 SAR images using a new land masking strategy, the appropriate model for sea clutter and a neural network as the discrimination scheme. Firstly, the fully convolutional network (FCN) is applied to separate the sea from the land. Then, by analyzing the sea clutter distribution in GF-3 SAR images, we choose the probability distribution model of Constant False Alarm Rate (CFAR) detector from K-distribution, Gamma distribution and Rayleigh distribution based on a tradeoff between the sea clutter modeling accuracy and the computational complexity. Furthermore, in order to better implement CFAR detection, we also use truncated statistic (TS) as a preprocessing scheme and iterative censoring scheme (ICS) for boosting the performance of detector. Finally, we employ a neural network to re-examine the results as the discrimination stage. Experiment results on three GF-3 SAR images verify the effectiveness and efficiency of this approach.

  9. Results and analysis of the Armara sea water intercomparison for 137Cs, 238Pu and 239,240Pu

    International Nuclear Information System (INIS)

    Mitchell, P.I.; Holm, E.; Dahlgaard, H.

    1999-01-01

    With the initiation of the EC-supported Arctic Marine Radioecology (ARMARA) project in late-1995, the need to ensure comparability of radionuclide measurement in sea water between the participating laboratories became apparent, as extensive data sets obtained in the course of separate expeditions, sometimes using different preconcentration and radiochemical techniques, were combined for modelling purposes

  10. Particle size analysis of sediments used in studies of the distribution of oil-derived contaminants from the ''Sea Empress''

    International Nuclear Information System (INIS)

    1998-01-01

    Following the Sea Empress oil-spill, sediment samples were collected around the approaches to Milford Haven and analysed for PAHs. In order to facilitate the interpretation of these results it was decided to analyse the particle size distribution of the sediments. This report presents the results of particle-size measurements of 150 of those offshore samples. (author)

  11. A multi-proxy analysis of Late Quaternary ocean and climate variability for the Maldives, Inner Sea

    Science.gov (United States)

    Bunzel, Dorothea; Schmiedl, Gerhard; Lindhorst, Sebastian; Mackensen, Andreas; Reolid, Jesús; Romahn, Sarah; Betzler, Christian

    2017-12-01

    As a natural sediment trap, the marine sediments of the sheltered central part of the Maldives Inner Sea represent an exceptional archive for paleoenvironmental and climate changes in the equatorial Indian Ocean. To evaluate the complex interplay between high-latitude and monsoonal climate variability, related dust fluxes, and regional oceanographic responses, we focused on Fe / Al, Ti / Al and Si / Ca ratios as proxies for terrigenous sediment delivery and total organic carbon (TOC) and Br XRF counts as proxies for marine productivity. Benthic foraminiferal fauna distributions, grain size and stable δ18O and δ13C data were used for evaluating changes in the benthic ecosystem and changes in the intermediate water circulation, bottom water current velocity and oxygenation. Our multi-proxy data record reveals an enhanced dust supply during the glacial intervals, causing elevated Fe / Al and Si / Ca ratios, an overall coarsening of the sediment and an increasing amount of agglutinated benthic foraminifera. The enhanced dust fluxes can be attributed to higher dust availability in the Asian desert and loess areas and its transport by intensified winter monsoon winds during glacial conditions. These combined effects of wind-induced mixing of surface waters and dust fertilization during the cold phases resulted in an increased surface water productivity and related organic carbon fluxes. Thus, the development of highly diverse benthic foraminiferal faunas with certain detritus and suspension feeders was fostered. The difference in the δ13C signal between epifaunal and deep infaunal benthic foraminifera reveals intermediate water oxygen concentrations between approximately 40 and 100 µmol kg-1 during this time. The precessional fluctuation pattern of oxygen changes resembles that from the deep Arabian Sea, suggesting an expansion of the oxygen minimum zone (OMZ) from the Arabian Sea into the tropical Indian Ocean with a probable regional signal of strengthened winter

  12. Photoquadrat Analysis of how Sea Urchins Reduce Abundance of Kappaphycus and Analysis of Regrowth of Coral on Plots in Kaneohe Bay, Oahu, Hawaii in 2002 (NODC Accession 0001022)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — An experiment was performed to assess the potential to use native sea urchins as biocontrols for alien/invasive seaweeds. One species of urchin, tripneustes...

  13. Photoquadrat analysis of how sea urchins reduce abundance of Kappaphycus and analysis of regrowth of coral on plots in Kaneohe Bay, Oahu, Hawaii in 2002 (NODC Accession 0001022)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — An experiment was performed to assess the potential to use native sea urchins as biocontrols for alien/invasive seaweeds. One species of urchin, tripneustes...

  14. Retrospective analysis of seasonal ocean growth rates of two sea winter Atlantic Salmon in eastern Maine using historic scales

    Science.gov (United States)

    Izzo, Lisa K.; Zydlewski, Joseph D.

    2017-01-01

    Substantial declines of anadromous Atlantic Salmon Salmo salar have occurred throughout its range, with many populations at the southern extent of the distribution currently extirpated or endangered. While both one sea winter (1SW) and two sea winter (2SW) spawner numbers for the North American stocks have declined since the 1950s, the decline has been most severe in 2SW spawners. The first months at sea are considered a period of high mortality. However, early ocean mortality alone cannot explain the more pronounced decline of 2SW spawners, suggesting that the second year at sea may be more critical than previously thought. Atlantic Salmon scales collected by anglers and the state agency from 1946 to 2013 from five rivers in eastern Maine were used to estimate smolt age and ocean age of returning adults. Additionally, seasonal growth rates of maiden 2SW spawners were estimated using intercirculi measurements and linear back-calculation methods. Generalized linear mixed models (Gaussian family, log link function) were used to investigate the influence of average sea surface temperature, accumulated thermal units, the Atlantic Multidecadal Oscillation (AMO) and North Atlantic Oscillation indices, smolt age, smolt length, postsmolt growth, and river of origin on growth rate during the oceanic migration of North American Atlantic Salmon. Results suggest that different factors influence salmon growth throughout their oceanic migration, and previous growth can be a strong predictor of future size. Growth was negatively impacted by the phase of the AMO, which has been linked to salmon abundance trends, in early spring following the postsmolt period. This is likely when the 1SW and 2SW stock components separate, and our results suggest that this period may be of interest in future work examining the disproportionate decline in 2SW spawners.

  15. New data on Weddell seal (Leptonychotes weddellii colonies: A genetic analysis of a top predator from the Ross Sea, Antarctica.

    Directory of Open Access Journals (Sweden)

    Ighor Antunes Zappes

    Full Text Available In this paper, we studied the genetic variability in Weddell seal from colonies in Terra Nova Bay and Wood Bay, both sites located in the Ross Sea area, Antarctica. Two mitochondrial genes and one nuclear gene, with different mutation rates, were sequenced to investigate the haplotype diversity of the colonies and to test for a possible recent expansion. Fifteen microsatellites were used to analyze their genetic structure. Sequenced genes and microsatellites were also used to estimate the effective population size of the studied colonies and the Ross Sea seal population. The Ross Sea has a high density population of Weddel seals, with an estimated effective number of 50,000 females, and 1,341 individuals for the sampling area, possibly due to its high primary production. The colonies showed high diversity (Hd > 0.90 and many exclusive haplotypes (> 75%, likely a consequence of the surprisingly high site fidelity of Weddell seals, despite the proximity of the colonies. Nevertheless, there was low microsatellite differentiation between colonies, suggesting that they are part of a single larger population. Their expansion seemed to have started during the last glacial cycle (around 58,000 years ago, indicating that the Ross Sea seal populations have been present in the area for long time, probably due to the lack of hunting by humans and terrestrial predation. As a top predator, the role of Weddell seals in the Ross Sea ecology is crucial, and its demographic dynamics should be monitored to follow the future changes of such an important ecosystem.

  16. Ulva and Enteromorpha (Ulvaceae, Chlorophyta) from two sides of the Yellow Sea: analysis of nuclear rDNA ITS and plastid rbcL sequence data

    Science.gov (United States)

    Wang, Jinfeng; Li, Nan; Jiang, Peng; Boo, Sung Min; Lee, Wook Jae; Cui, Yulin; Lin, Hanzhi; Zhao, Jin; Liu, Zhengyi; Qin, Song

    2010-07-01

    Ulvacean green seaweeds are common worldwide; they formed massive green tides in the Yellow Sea in recent years, which caused marine ecological problems as well as a social issue. We investigated two major genera of the Ulvaceae, Ulva and Enteromorpha, and collected the plastid rbcL and nuclear ITS sequences of specimens of the genera in two sides of the Yellow Sea and analyzed them. Phylogenetic trees of rbcL data show the occurrence of five species of Enteromorpha ( E. compressa, E. flexuosa, E. intestinalis, E. linza and E. prolifera) and three species of Ulva ( U. pertusa, U. rigida and U. ohnoi). However, we found U. ohnoi, which is known as a subtropical to tropical species, at two sites on Jeju Island, Korea. Four ribotypes in partial sequences of 5.8S rDNA and ITS2 from E. compressa were also found. Ribotype network analysis revealed that the common ribotype, occurring in China, Korea and Europe, is connected with ribotypes from Europe and China/Japan. Although samples of the same species were collected from both sides of the Yellow Sea, intraspecific genetic polymorphism of each species was low among samples collected worldwide.

  17. Nord stream: not just a pipeline. An analysis of the political debates in the Baltic Sea region regarding the planned gas pipeline from Russia to Germany

    Energy Technology Data Exchange (ETDEWEB)

    Whist, Bendik Solum

    2008-11-15

    This report is an analysis of the planned gas pipeline from Russia to Germany through the Baltic Sea known as Nord Stream. Although not yet realised, the project has, since its birth, been the subject of harsh criticism and opposition by a significant number of states that consider themselves affected by the pipeline. Whereas the Baltic States and Poland have interpreted the pipeline as a politically motivated strategy that will increase Russia's leverage on them and threaten their energy security, the debate in Sweden was at first mostly concerned with the prospect of increased Russian military presence in the Swedish Exclusive Economic Zone. The potential environmental impact of the pipeline has been, and continues to be, an overarching concern shared by all the littoral states of the Baltic Sea. Proponents of Nord Stream, most notably Germany, Russia and the Nord Stream consortium, have largely dismissed the concerns as unwarranted and argue that the pipeline is a common European project that all EU-members should embrace, as it will provide much-needed gas to an increasingly energy-thirsty union. This report is an extensive study of the divergent attitudes and debates that have surged in the region regarding Nord Stream, and the aim is to provide plausible explanations as to why the interpretations of the project have been so different in the various states. The report is based on a variety of sources, including several first-hand interviews with researchers and government officials in the Baltic Sea region. (author). refs.,fig.,tabs

  18. Analysis of gravity anomalies in the Ulleung Basin (East Sea/Sea of Japan) and its implications for the crustal structure of rift-dominated back-arc basin

    Science.gov (United States)

    Kim, Yoon-Mi; Lee, Sang-Mook

    2018-01-01

    The Ulleung Basin (UB), one of three major basins in the East Sea/Sea of Japan, is considered to represent a continental-rifting end-member of back-arc basin system, but is much less understood compared to the nearby Yamato Basin (YB) and Japan Basin (JB). This study examines the gravity anomalies of the UB since the variation in crustal thickness can provide important insights on the mode of extension during basin opening. Our analysis shows that the Moho depth (from the sea surface) varies from 16 km at the basin center to 22 km at the edges. However, within the central part of the basin, the crustal thickness (not including sediment) is more or less the same (10-12 km), by varying only about 10-20% of the total thickness, contrary to the previous suggestions. Our finding of anomalous but uniformly thick crust is consistent with the recent seismic results from the YB (14 km on average). A mantle residual gravity anomaly high (∼20 mGal) exists in the northeastern part of the UB. This feature is interpreted as the location of maximum extension (slightly thinner crust by ∼1 km). Together with another moderate gravity high to the southwest, the two anomalies form a NNE-SSW line, which corresponds to the direction of the major tectonic structures of the Korean Peninsula. We argue that the a massive magmatic emplacement took place extensively in the lower crust of the UB during the opening, significantly increasing its overall thickness to almost twice as that of the JB where a mid-ocean-ridge style seafloor spreading occurred. Two important post-opening processes took place after the formation of uniformly thick crust: post-rift volcanic intrusions in the north, especially in its northeast sections but had little effect on the residual gravity anomaly itself, and the deflection of crust in response to differential sediment loading towards the south, producing the median high in the basement in response to the flexural bending. We also conducted a simple test to

  19. Sea level trends in Southeast Asian seas

    Science.gov (United States)

    Strassburg, M. W.; Hamlington, B. D.; Leben, R. R.; Manurung, P.; Lumban Gaol, J.; Nababan, B.; Vignudelli, S.; Kim, K.-Y.

    2015-05-01

    Southeast Asian seas span the largest archipelago in the global ocean and provide a complex oceanic pathway connecting the Pacific and Indian oceans. The Southeast Asian sea regional sea level trends are some of the highest observed in the modern satellite altimeter record that now spans almost 2 decades. Initial comparisons of global sea level reconstructions find that 17-year sea level trends over the past 60 years exhibit good agreement with decadal variability associated with the Pacific Decadal Oscillation and related fluctuations of trade winds in the region. The Southeast Asian sea region exhibits sea level trends that vary dramatically over the studied time period. This historical variation suggests that the strong regional sea level trends observed during the modern satellite altimeter record will abate as trade winds fluctuate on decadal and longer timescales. Furthermore, after removing the contribution of the Pacific Decadal Oscillation (PDO) to sea level trends in the past 20 years, the rate of sea level rise is greatly reduced in the Southeast Asian sea region. As a result of the influence of the PDO, the Southeast Asian sea regional sea level trends during the 2010s and 2020s are likely to be less than the global mean sea level (GMSL) trend if the observed oscillations in wind forcing and sea level persist. Nevertheless, long-term sea level trends in the Southeast Asian seas will continue to be affected by GMSL rise occurring now and in the future.

  20. Sea Level Rise Data Discovery

    Science.gov (United States)

    Quach, N.; Huang, T.; Boening, C.; Gill, K. M.

    2016-12-01

    Research related to sea level rise crosses multiple disciplines from sea ice to land hydrology. The NASA Sea Level Change Portal (SLCP) is a one-stop source for current sea level change information and data, including interactive tools for accessing and viewing regional data, a virtual dashboard of sea level indicators, and ongoing updates through a suite of editorial products that include content articles, graphics, videos, and animations. The architecture behind the SLCP makes it possible to integrate web content and data relevant to sea level change that are archived across various data centers as well as new data generated by sea level change principal investigators. The Extensible Data Gateway Environment (EDGE) is incorporated into the SLCP architectur