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Sample records for sars nucleocapsid measured

  1. Mesodynamics in the SARS nucleocapsid measured by NMR field cycling

    Energy Technology Data Exchange (ETDEWEB)

    Clarkson, Michael W.; Lei Ming; Eisenmesser, Elan Z.; Labeikovsky, Wladimir [MS009 Brandeis University, Department of Biochemistry and Howard Hughes Medical Institute (United States); Redfield, Alfred [MS009 Brandeis University, Department of Biochemistry (United States)], E-mail: redfield@brandeis.edu; Kern, Dorothee [MS009 Brandeis University, Department of Biochemistry and Howard Hughes Medical Institute (United States)], E-mail: dkern@brandeis.edu

    2009-09-15

    Protein motions on all timescales faster than molecular tumbling are encoded in the spectral density. The dissection of complex protein dynamics is typically performed using relaxation rates determined at high and ultra-high field. Here we expand this range of the spectral density to low fields through field cycling using the nucleocapsid protein of the SARS coronavirus as a model system. The field-cycling approach enables site-specific measurements of R{sub 1} at low fields with the sensitivity and resolution of a high-field magnet. These data, together with high-field relaxation and heteronuclear NOE, provide evidence for correlated rigid-body motions of the entire {beta}-hairpin, and corresponding motions of adjacent loops with a time constant of 0.8 ns (mesodynamics). MD simulations substantiate these findings and provide direct verification of the time scale and collective nature of these motions.

  2. Immune responses against SARS-coronavirus nucleocapsid protein induced by DNA vaccine

    International Nuclear Information System (INIS)

    Zhao Ping; Cao Jie; Zhao Lanjuan; Qin Zhaolin; Ke Jinshan; Pan Wei; Ren Hao; Yu Jianguo; Qi Zhongtian

    2005-01-01

    The nucleocapsid (N) protein of SARS-coronavirus (SARS-CoV) is the key protein for the formation of the helical nucleocapsid during virion assembly. This protein is believed to be more conserved than other proteins of the virus, such as spike and membrane glycoprotein. In this study, the N protein of SARS-CoV was expressed in Escherichia coli DH5α and identified with pooled sera from patients in the convalescence phase of SARS. A plasmid pCI-N, encoding the full-length N gene of SARS-CoV, was constructed. Expression of the N protein was observed in COS1 cells following transfection with pCI-N. The immune responses induced by intramuscular immunization with pCI-N were evaluated in a murine model. Serum anti-N immunoglobulins and splenocytes proliferative responses against N protein were observed in immunized BALB/c mice. The major immunoglobulin G subclass recognizing N protein was immunoglobulin G2a, and stimulated splenocytes secreted high levels of gamma interferon and IL-2 in response to N protein. More importantly, the immunized mice produced strong delayed-type hypersensitivity (DTH) and CD8 + CTL responses to N protein. The study shows that N protein of SARS-CoV not only is an important B cell immunogen, but also can elicit broad-based cellular immune responses. The results indicate that the N protein may be of potential value in vaccine development for specific prophylaxis and treatment against SARS

  3. Dendritic Cell Targeted Chitosan Nanoparticles for Nasal DNA Immunization against SARS CoV Nucleocapsid Protein

    OpenAIRE

    Raghuwanshi, Dharmendra; Mishra, Vivek; Das, Dipankar; Kaur, Kamaljit; Suresh, Mavanur R.

    2012-01-01

    This work investigates the formulation and in vivo efficacy of dendritic cell (DC) targeted plasmid DNA loaded biotinylated chitosan nanoparticles for nasal immunization against nucleocapsid (N) protein of severe acute respiratory syndrome coronavirus (SARS-CoV) as antigen. The induction of antigen-specific mucosal and systemic immune response at the site of virus entry is a major challenge for vaccine design. Here, we designed a strategy for non-invasive receptor mediated gene delivery to na...

  4. Dendritic cell targeted chitosan nanoparticles for nasal DNA immunization against SARS CoV nucleocapsid protein.

    Science.gov (United States)

    Raghuwanshi, Dharmendra; Mishra, Vivek; Das, Dipankar; Kaur, Kamaljit; Suresh, Mavanur R

    2012-04-02

    This work investigates the formulation and in vivo efficacy of dendritic cell (DC) targeted plasmid DNA loaded biotinylated chitosan nanoparticles for nasal immunization against nucleocapsid (N) protein of severe acute respiratory syndrome coronavirus (SARS-CoV) as antigen. The induction of antigen-specific mucosal and systemic immune response at the site of virus entry is a major challenge for vaccine design. Here, we designed a strategy for noninvasive receptor mediated gene delivery to nasal resident DCs. The pDNA loaded biotinylated chitosan nanoparticles were prepared using a complex coacervation process and characterized for size, shape, surface charge, plasmid DNA loading and protection against nuclease digestion. The pDNA loaded biotinylated chitosan nanoparticles were targeted with bifunctional fusion protein (bfFp) vector for achieving DC selective targeting. The bfFp is a recombinant fusion protein consisting of truncated core-streptavidin fused with anti-DEC-205 single chain antibody (scFv). The core-streptavidin arm of fusion protein binds with biotinylated nanoparticles, while anti-DEC-205 scFv imparts targeting specificity to DC DEC-205 receptor. We demonstrate that intranasal administration of bfFp targeted formulations along with anti-CD40 DC maturation stimuli enhanced magnitude of mucosal IgA as well as systemic IgG against N protein. The strategy led to the detection of augmented levels of N protein specific systemic IgG and nasal IgA antibodies. However, following intranasal delivery of naked pDNA no mucosal and systemic immune responses were detected. A parallel comparison of targeted formulations using intramuscular and intranasal routes showed that the intramuscular route is superior for induction of systemic IgG responses compared with the intranasal route. Our results suggest that targeted pDNA delivery through a noninvasive intranasal route can be a strategy for designing low-dose vaccines.

  5. Determination and application of immunodominant regions of SARS coronavirus spike and nucleocapsid proteins recognized by sera from different animal species.

    Science.gov (United States)

    Yu, Meng; Stevens, Vicky; Berry, Jody D; Crameri, Gary; McEachern, Jennifer; Tu, Changchun; Shi, Zhengli; Liang, Guodong; Weingartl, Hana; Cardosa, Jane; Eaton, Bryan T; Wang, Lin-Fa

    2008-02-29

    Knowledge of immunodominant regions in major viral antigens is important for rational design of effective vaccines and diagnostic tests. Although there have been many reports of such work done for SARS-CoV, these were mainly focused on the immune responses of humans and mice. In this study, we aim to search for and compare immunodominant regions of the spike (S) and nucleocapsid (N) proteins which are recognized by sera from different animal species, including mouse, rat, rabbit, civet, pig and horse. Twelve overlapping recombinant protein fragments were produced in Escherichia coli, six each for the S and N proteins, which covered the entire coding region of the two proteins. Using a membrane-strip based Western blot approach, the reactivity of each antigen fragment against a panel of animal sera was determined. Immunodominant regions containing linear epitopes, which reacted with sera from all the species tested, were identified for both proteins. The S3 fragment (aa 402-622) and the N4 fragment (aa 220-336) were the most immunodominant among the six S and N fragments, respectively. Antibodies raised against the S3 fragment were able to block the binding of a panel of S-specific monoclonal antibodies (mAb) to SARS-CoV in ELISA, further demonstrating the immunodominance of this region. Based on these findings, one-step competition ELISAs were established which were able to detect SARS-CoV antibodies from human and at least seven different animal species. Considering that a large number of animal species are known to be susceptible to SARS-CoV, these assays will be a useful tool to trace the origin and transmission of SARS-CoV and to minimise the risk of animal-to-human transmission.

  6. Boosted expression of the SARS-CoV nucleocapsid protein in tobacco and its immunogenicity in mice.

    Science.gov (United States)

    Zheng, Nuoyan; Xia, Ran; Yang, Cuiping; Yin, Bojiao; Li, Yin; Duan, Chengguo; Liang, Liming; Guo, Huishan; Xie, Qi

    2009-08-06

    Vaccines produced in plant systems are safe and economical; however, the extensive application of plant-based vaccines is mainly hindered by low expression levels of heterologous proteins in plant systems. Here, we demonstrated that the post-transcriptional gene silencing suppressor p19 protein from tomato bushy stunt virus substantially enhanced the transient expression of recombinant SARS-CoV nucleocapsid (rN) protein in Nicotiana benthamiana. The rN protein in the agrobacteria-infiltrated plant leaf accumulated up to a concentration of 79 microg per g fresh leaf weight at 3 days post infiltration. BALB/c mice were intraperitoneally vaccinated with pre-treated plant extract emulsified in Freund's adjuvant. The rN protein-specific IgG in the mouse sera attained a titer about 1:1,800 following three doses of immunization, which suggested effective B-cell maturation and differentiation in mice. Antibodies of the subclasses IgG1 and IgG2a were abundantly present in the mouse sera. During vaccination of rN protein, the expression of IFN-gamma and IL-10 was evidently up-regulated in splenocytes at different time points, while the expression of IL-2 and IL-4 was not. Up to now, this is the first study that plant-expressed recombinant SARS-CoV N protein can induce strong humoral and cellular responses in mice.

  7. Generation of human antibody fragments recognizing distinct epitopes of the nucleocapsid (N SARS-CoV protein using a phage display approach

    Directory of Open Access Journals (Sweden)

    Grasso Felicia

    2005-09-01

    Full Text Available Abstract Background Severe acute respiratory syndrome (SARS-CoV is a newly emerging virus that causes SARS with high mortality rate in infected people. Successful control of the global SARS epidemic will require rapid and sensitive diagnostic tests to monitor its spread, as well as, the development of vaccines and new antiviral compounds including neutralizing antibodies that effectively prevent or treat this disease. Methods The human synthetic single-chain fragment variable (scFv ETH-2 phage antibody library was used for the isolation of scFvs against the nucleocapsid (N protein of SARS-CoV using a bio panning-based strategy. The selected scFvs were characterized under genetics-molecular aspects and for SARS-CoV N protein detection in ELISA, western blotting and immunocytochemistry. Results Human scFv antibodies to N protein of SARS-CoV can be easily isolated by selecting the ETH-2 phage library on immunotubes coated with antigen. These in vitro selected human scFvs specifically recognize in ELISA and western blotting studies distinct epitopes in N protein domains and detect in immunohistochemistry investigations SARS-CoV particles in infected Vero cells. Conclusion The human scFv antibodies isolated and described in this study represent useful reagents for rapid detection of N SARS-CoV protein and SARS virus particles in infected target cells.

  8. Solution structure of the c-terminal dimerization domain of SARS coronavirus nucleocapsid protein solved by the SAIL-NMR method.

    Science.gov (United States)

    Takeda, Mitsuhiro; Chang, Chung-ke; Ikeya, Teppei; Güntert, Peter; Chang, Yuan-hsiang; Hsu, Yen-lan; Huang, Tai-huang; Kainosho, Masatsune

    2008-07-18

    The C-terminal domain (CTD) of the severe acute respiratory syndrome coronavirus (SARS-CoV) nucleocapsid protein (NP) contains a potential RNA-binding region in its N-terminal portion and also serves as a dimerization domain by forming a homodimer with a molecular mass of 28 kDa. So far, the structure determination of the SARS-CoV NP CTD in solution has been impeded by the poor quality of NMR spectra, especially for aromatic resonances. We have recently developed the stereo-array isotope labeling (SAIL) method to overcome the size problem of NMR structure determination by utilizing a protein exclusively composed of stereo- and regio-specifically isotope-labeled amino acids. Here, we employed the SAIL method to determine the high-quality solution structure of the SARS-CoV NP CTD by NMR. The SAIL protein yielded less crowded and better resolved spectra than uniform (13)C and (15)N labeling, and enabled the homodimeric solution structure of this protein to be determined. The NMR structure is almost identical with the previously solved crystal structure, except for a disordered putative RNA-binding domain at the N-terminus. Studies of the chemical shift perturbations caused by the binding of single-stranded DNA and mutational analyses have identified the disordered region at the N-termini as the prime site for nucleic acid binding. In addition, residues in the beta-sheet region also showed significant perturbations. Mapping of the locations of these residues onto the helical model observed in the crystal revealed that these two regions are parts of the interior lining of the positively charged helical groove, supporting the hypothesis that the helical oligomer may form in solution.

  9. HLA-A*0201 T-cell epitopes in severe acute respiratory syndrome (SARS) coronavirus nucleocapsid and spike proteins

    International Nuclear Information System (INIS)

    Tsao, Y.-P.; Lin, J.-Y.; Jan, J.-T.; Leng, C.-H.; Chu, C.-C.; Yang, Y.-C.; Chen, S.-L.

    2006-01-01

    The immunogenicity of HLA-A*0201-restricted cytotoxic T lymphocyte (CTL) peptide in severe acute respiratory syndrome coronavirus (SARS-CoV) nuclear capsid (N) and spike (S) proteins was determined by testing the proteins' ability to elicit a specific cellular immune response after immunization of HLA-A2.1 transgenic mice and in vitro vaccination of HLA-A2.1 positive human peripheral blood mononuclearcytes (PBMCs). First, we screened SARS N and S amino acid sequences for allele-specific motif matching those in human HLA-A2.1 MHC-I molecules. From HLA peptide binding predictions (http://thr.cit.nih.gov/molbio/hla_bind/), ten each potential N- and S-specific HLA-A2.1-binding peptides were synthesized. The high affinity HLA-A2.1 peptides were validated by T2-cell stabilization assays, with immunogenicity assays revealing peptides N223-231, N227-235, and N317-325 to be First identified HLA-A*0201-restricted CTL epitopes of SARS-CoV N protein. In addition, previous reports identified three HLA-A*0201-restricted CTL epitopes of S protein (S978-986, S1203-1211, and S1167-1175), here we found two novel peptides S787-795 and S1042-1050 as S-specific CTL epitopes. Moreover, our identified N317-325 and S1042-1050 CTL epitopes could induce recall responses when IFN-γ stimulation of blood CD8 + T-cells revealed significant difference between normal healthy donors and SARS-recovered patients after those PBMCs were in vitro vaccinated with their cognate antigen. Our results would provide a new insight into the development of therapeutic vaccine in SARS

  10. False-Positive Results in a Recombinant Severe Acute Respiratory Syndrome-Associated Coronavirus (SARS-CoV) Nucleocapsid Enzyme-Linked Immunosorbent Assay Due to HCoV-OC43 and HCoV-229E Rectified by Western Blotting with Recombinant SARS-CoV Spike Polypeptide

    OpenAIRE

    Woo, Patrick C. Y.; Lau, Susanna K. P.; Wong, Beatrice H. L.; Chan, Kwok-Hung; Hui, Wai-Ting; Kwan, Grace S. W.; Peiris, J. S. Malik; Couch, Robert B.; Yuen, Kwok-Yung

    2004-01-01

    Using paired serum samples obtained from patients with illness associated with increases in anti-human coronavirus OC43 (HCoV-OC43) or anti-HCoV-229E antibodies, we examined the possibility of false-positive results detected in a recombinant severe acute respiratory syndrome (SARS)-associated coronavirus (SARS-CoV) nucleocapsid protein immunoglobulin G enzyme-linked immunosorbent assay (ELISA). Three of the 21 and 1 of the 7 convalescent-phase serum samples from persons with increases in anti...

  11. The Radiometric Measurement Quantity for SAR Images

    OpenAIRE

    Döring, Björn J.; Schwerdt, Marco

    2013-01-01

    A Synthetic Aperture Radar (SAR) system measures among other quantities the terrain radar reflectivity. After image calibration, the pixel intensities are commonly expressed in terms of radar cross sections (for point targets) or as backscatter coefficients (for distributed targets), which are directly related. This paper argues that pixel intensities are not generally proportional to radar cross section or derived physical quantities. The paper further proposes to replace the inaccurate term...

  12. Spaceborne Differential SAR Interferometry: Data Analysis Tools for Deformation Measurement

    Directory of Open Access Journals (Sweden)

    Michele Crosetto

    2011-02-01

    Full Text Available This paper is focused on spaceborne Differential Interferometric SAR (DInSAR for land deformation measurement and monitoring. In the last two decades several DInSAR data analysis procedures have been proposed. The objective of this paper is to describe the DInSAR data processing and analysis tools developed at the Institute of Geomatics in almost ten years of research activities. Four main DInSAR analysis procedures are described, which range from the standard DInSAR analysis based on a single interferogram to more advanced Persistent Scatterer Interferometry (PSI approaches. These different procedures guarantee a sufficient flexibility in DInSAR data processing. In order to provide a technical insight into these analysis procedures, a whole section discusses their main data processing and analysis steps, especially those needed in PSI analyses. A specific section is devoted to the core of our PSI analysis tools: the so-called 2+1D phase unwrapping procedure, which couples a 2D phase unwrapping, performed interferogram-wise, with a kind of 1D phase unwrapping along time, performed pixel-wise. In the last part of the paper, some examples of DInSAR results are discussed, which were derived by standard DInSAR or PSI analyses. Most of these results were derived from X-band SAR data coming from the TerraSAR-X and CosmoSkyMed sensors.

  13. Heterogeneity Measurement Based on Distance Measure for Polarimetric SAR Data

    Science.gov (United States)

    Xing, Xiaoli; Chen, Qihao; Liu, Xiuguo

    2018-04-01

    To effectively test the scene heterogeneity for polarimetric synthetic aperture radar (PolSAR) data, in this paper, the distance measure is introduced by utilizing the similarity between the sample and pixels. Moreover, given the influence of the distribution and modeling texture, the K distance measure is deduced according to the Wishart distance measure. Specifically, the average of the pixels in the local window replaces the class center coherency or covariance matrix. The Wishart and K distance measure are calculated between the average matrix and the pixels. Then, the ratio of the standard deviation to the mean is established for the Wishart and K distance measure, and the two features are defined and applied to reflect the complexity of the scene. The proposed heterogeneity measure is proceeded by integrating the two features using the Pauli basis. The experiments conducted on the single-look and multilook PolSAR data demonstrate the effectiveness of the proposed method for the detection of the scene heterogeneity.

  14. Empirical wind retrieval model based on SAR spectrum measurements

    Science.gov (United States)

    Panfilova, Maria; Karaev, Vladimir; Balandina, Galina; Kanevsky, Mikhail; Portabella, Marcos; Stoffelen, Ad

    The present paper considers polarimetric SAR wind vector applications. Remote-sensing measurements of the near-surface wind over the ocean are of great importance for the understanding of atmosphere-ocean interaction. In recent years investigations for wind vector retrieval using Synthetic Aperture Radar (SAR) data have been performed. In contrast with scatterometers, a SAR has a finer spatial resolution that makes it a more suitable microwave instrument to explore wind conditions in the marginal ice zones, coastal regions and lakes. The wind speed retrieval procedure from scatterometer data matches the measured radar backscattering signal with the geophysical model function (GMF). The GMF determines the radar cross section dependence on the wind speed and direction with respect to the azimuthal angle of the radar beam. Scatterometers provide information on wind speed and direction simultaneously due to the fact that each wind vector cell (WVC) is observed at several azimuth angles. However, SAR is not designed to be used as a high resolution scatterometer. In this case, each WVC is observed at only one single azimuth angle. That is why for wind vector determination additional information such as wind streak orientation over the sea surface is required. It is shown that the wind vector can be obtained using polarimetric SAR without additional information. The main idea is to analyze the spectrum of a homogeneous SAR image area instead of the backscattering normalized radar cross section. Preliminary numerical simulations revealed that SAR image spectral maxima positions depend on the wind vector. Thus the following method for wind speed retrieval is proposed. In the first stage of the algorithm, the SAR spectrum maxima are determined. This procedure is carried out to estimate the wind speed and direction with ambiguities separated by 180 degrees due to the SAR spectrum symmetry. The second stage of the algorithm allows us to select the correct wind direction

  15. The Ecosystems SAR (EcoSAR) an Airborne P-band Polarimetric InSAR for the Measurement of Vegetation Structure, Biomass and Permafrost

    Science.gov (United States)

    Rincon, Rafael F.; Fatoyinbo, Temilola; Ranson, K. Jon; Osmanoglu, Batuhan; Sun, Guoqing; Deshpande, Manohar D.; Perrine, Martin L.; Du Toit, Cornelis F.; Bonds, Quenton; Beck, Jaclyn; hide

    2014-01-01

    EcoSAR is a new synthetic aperture radar (SAR) instrument being developed at the NASA/ Goddard Space Flight Center (GSFC) for the polarimetric and interferometric measurements of ecosystem structure and biomass. The instrument uses a phased-array beamforming architecture and supports full polarimetric measurements and single pass interferometry. This Instrument development is part of NASA's Earth Science Technology Office Instrument Incubator Program (ESTO IIP).

  16. Application of postured human model for SAR measurements

    Science.gov (United States)

    Vuchkovikj, M.; Munteanu, I.; Weiland, T.

    2013-07-01

    In the last two decades, the increasing number of electronic devices used in day-to-day life led to a growing interest in the study of the electromagnetic field interaction with biological tissues. The design of medical devices and wireless communication devices such as mobile phones benefits a lot from the bio-electromagnetic simulations in which digital human models are used. The digital human models currently available have an upright position which limits the research activities in realistic scenarios, where postured human bodies must be considered. For this reason, a software application called "BodyFlex for CST STUDIO SUITE" was developed. In its current version, this application can deform the voxel-based human model named HUGO (Dipp GmbH, 2010) to allow the generation of common postures that people use in normal life, ensuring the continuity of tissues and conserving the mass to an acceptable level. This paper describes the enhancement of the "BodyFlex" application, which is related to the movements of the forearm and the wrist of a digital human model. One of the electromagnetic applications in which the forearm and the wrist movement of a voxel based human model has a significant meaning is the measurement of the specific absorption rate (SAR) when a model is exposed to a radio frequency electromagnetic field produced by a mobile phone. Current SAR measurements of the exposure from mobile phones are performed with the SAM (Specific Anthropomorphic Mannequin) phantom which is filled with a dispersive but homogeneous material. We are interested what happens with the SAR values if a realistic inhomogeneous human model is used. To this aim, two human models, a homogeneous and an inhomogeneous one, in two simulation scenarios are used, in order to examine and observe the differences in the results for the SAR values.

  17. SU-F-I-27: Measurement of SAR and Temperature Elevation During MRI Scans

    Energy Technology Data Exchange (ETDEWEB)

    Seo, Y [Korea Research Institute of Standards and Science, Daejeon (Korea, Republic of)

    2016-06-15

    Purpose: The poor reliability and repeatability of the manufacturer-reported SAR values on clinical MRI systems have been acknowledged. The purpose of this study is to not only measure SAR values, but also RF-induced temperature elevation at 1.5 and 3T MRI systems. Methods: SAR measurement experiment was performed at 1.5 and 3T. Three MRI RF sequences (T1w TSE, T1w inversion recovery, and T2w TSE) with imaging parameters were selected. A hydroxyl-ethylcelluose (HEC) gelled saline phantom mimicking human body tissue was made. Human torso phantom were constructed, based on Korean adult standard anthropometric reference data (Fig.1). FDTD method was utilized to calculate the SAR distribution using Sim4Life software. Based on the results of the simulation, 4 electrical field (E-field) sensors were located inside the phantom. 55 Fiber Bragg Grating (FBG) temperature sensors (27 sensors in upper and lower cover lids, and one sensor located in the center as a reference) were located inside the phantom to measure temperature change during MRI scan (Fig.2). Results: Simulation shows that SAR value is 0.4 W/kg in the periphery and 0.001 W/kg in the center (Fig.2). One 1.5T and one of two 3T MRI systems represent that the measured SAR values were lower than MRI scanner-reported SAR values. However, the other 3T MRI scanner shows that the averaged SAR values measured by probe 2, 3, and 4 are 6.83, 7.59, and 6.01 W/kg, compared to MRI scanner-reported whole body SAR value (<1.5 W/kg) for T2w TSE (Table 1). The temperature elevation measured by FBG sensors is 5.2°C in the lateral shoulder, 5.1°C in the underarm, 4.7°C in the anterior axilla, 4.8°C in the posterior axilla, and 4.8°C in the lateral waist for T2w TSE (Fig.3). Conclusion: It is essential to assess the safety of MRI system for patient by measuring accurate SAR deposited in the body during clinical MRI.

  18. High-speed railway bridge dynamic measurement based on GB-InSAR technology

    Science.gov (United States)

    Liu, Miao; Ding, Ke-liang; Liu, Xianglei; Song, Zichao

    2015-12-01

    It is an important task to evaluate the safety during the life of bridges using the corresponding vibration parameters. With the advantages of non-contact and high accuracy, the new remote measurement technology of GB-InSAR is suitable to make dynamic measurement for bridges to acquire the vibration parameters. Three key technologies, including stepped frequency-continuous wave technique, synthetic aperture radar and interferometric measurement technique, are introduced in this paper. The GB-InSAR is applied for a high-speed railway bridge to measure of dynamic characteristics with the train passing which can be used to analyze the safety of the monitored bridge. The test results shown that it is an reliable non-contact technique for GB-InSAR to acquire the dynamic vibration parameter for the high-speed railway bridges.

  19. Ionospheric effects on DInSAR measurements of interseismic deformation in China

    Science.gov (United States)

    Gong, W.; Shan, X.; Song, X.; Liao, H.; Meyer, F. J.

    2017-12-01

    Interseismic deformation signals are small ground displacement that is critical to monitor the strain accumulates of major faults to foresee the potential seismic hazard. Accurate measurements of surface deformation could help recognize and interpret even subtle displacement and to give a better understanding of active fault behavior. However, the value and applicability of InSAR for inter-seismic monitoring problems is limited by the influence of temporal decorrelation and electromagnetic path delay variations (atmospheric disturbance), both reducing the sensitivity and accuracy of the technique. Ionospheric signal, a major part of atmospheric disturbance in InSAR, is related to the density of free electrons along the ray path, thus, that is dependent on the SAR signal frequency. Ionosphere induced phase distortions can lead to azimuth/range defocusing, geometry distortions and interferometric phase distortions. Some ionosphere phenomenon have been reported more severe at equatorial region and polar zones, e.g., ionosphere irregularity, while for middle latitude regions like West China it has not been thoroughly analyzed. Thus, this study is focus on the evaluation of ionosphere impacts in middle latitude zone, and its impacts in monitoring interseismic deformation in West China. The outcome would be useful to provide an empiric prior error condition of ionosphere disturbance, which can further benefit InSAR result interpretation and geophysical inversion, as well as the SAR data arrangement in future operational-(cloud) InSAR processing system. The study focus on two parts: 1. We will analyze the temporal-spatial variation of ionosphere and its magnitude at middle latitude zone, and investigate its impacts to current satellite SAR (C-band (Sentinel-1) and L-band (ALOS2) dataset) in earthquake-related deformation studies, especially inter-seismic study. 2. Ionosphere phase patterns at mid latitudes is typically small and the structure is compatibly smooth. This

  20. Estimation of Atmospheric Path Delays in TerraSAR-X Data using Models vs. Measurements

    Directory of Open Access Journals (Sweden)

    Donat Perler

    2008-12-01

    Full Text Available Spaceborne synthetic aperture radar (SAR measurements of the Earth’s surface depend on electromagnetic waves that are subject to atmospheric path delays, in turn affecting geolocation accuracy. The atmosphere influences radar signal propagation by modifying its velocity and direction, effects which can be modeled. We use TerraSAR-X (TSX data to investigate improvements in the knowledge of the scene geometry. To precisely estimate atmospheric path delays, we analyse the signal return of four corner reflectors with accurately surveyed positions (based on differential GPS, placed at different altitudes yet with nearly identical slant ranges to the sensor. The comparison of multiple measurements with path delay models under these geometric conditions also makes it possible to evaluate the corrections for the atmospheric path delay made by the TerraSAR processor and to propose possible improvements.

  1. Soil gases and SAR measurements reveal hidden faults on the sliding flank of Mt. Etna (Italy)

    Science.gov (United States)

    Bonforte, Alessandro; Federico, Cinzia; Giammanco, Salvatore; Guglielmino, Francesco; Liuzzo, Marco; Neri, Marco

    2013-02-01

    From October 2008 to November 2009, soil CO2, radon and structural field surveys were performed on Mt. Etna, in order to acquire insights into active tectonic structures in a densely populated sector of the south-eastern flank of the volcano, which is involved in the flank dynamics, as highlighted by satellite data (InSAR). The studied area extends about 150 km2, in a sector of the volcano where InSAR results detected several lineaments that were not well-defined from previous geological surveys. In order to validate and better constrain these features with ground data evidences, soil CO2 and soil radon measurements were performed along transects roughly orthogonal to the newly detected faults, with measurement points spaced about 100 m. In each transect, the highest CO2 values were found very close to the lineaments evidenced by InSAR observations. Anomalous soil CO2 and radon values were also measured at old eruptive fractures. In some portions of the investigated area soil gas anomalies were rather broad over transects, probably suggesting a complex structural framework consisting of several parallel volcano-tectonic structures, instead of a single one. Soil gas measurements proved particularly useful in areas at higher altitude on Mt. Etna (i.e. above 900 m asl), where InSAR results are not very informative/are fairly limited, and allowed recognizing the prolongation of some tectonic lineaments towards the summit of the volcano. At a lower altitude on the volcanic edifice, soil gas anomalies define the active structures indicated by InSAR results prominently, down to almost the coastline and through the northern periphery of the city of Catania. Coupling InSAR with soil gas prospecting methods has thus proved to be a powerful tool in detecting hidden active structures that do not show significant field evidences.

  2. Confined aquifer head measurements and storage properties in the San Luis Valley, Colorado, from spaceborne InSAR observations

    Science.gov (United States)

    Chen, Jingyi; Knight, Rosemary; Zebker, Howard A.; Schreüder, Willem A.

    2016-05-01

    Interferometric Synthetic Aperture Radar (InSAR), a remote sensing technique for measuring centimeter-level surface deformation, is used to estimate hydraulic head in the confined aquifer of the San Luis Valley (SLV), Colorado. Reconstructing head measurements from InSAR in agricultural regions can be difficult, as InSAR phase data are often decorrelated due to vegetation growth. Analysis of 17 L-band ALOS PALSAR scenes, acquired between January 2007 and March 2011, demonstrates that comprehensive InSAR deformation measurements can be recovered over the vegetated groundwater basin with an improved processing strategy. Local skeletal storage coefficients and time delays between the head change and deformation are estimated through a joint InSAR-well data analysis. InSAR subsidence estimates are transformed to head changes with finer temporal and spatial resolution than is possible using existing well records alone. Both InSAR and well data suggest that little long-term water-storage loss occurred in the SLV over the study period and that inelastic compaction was negligible. The seasonal head variations derived from InSAR are consistent with the existing well data at most locations where confined aquifer pumping activity dominates. Our results demonstrate the advantages of InSAR measurements for basin-wide characterization of aquifer storage properties and groundwater levels over agricultural regions.

  3. The Measuring of the Gamma Dose Rate in the Air at Location of the Sar-Mountain

    International Nuclear Information System (INIS)

    Adrovic, F.; Ninkovic, M.; Adrovic, S.

    1999-01-01

    The results of the measured values of gamma dose rate in the air at the location of Sar-mountain (Balkan Peninsula) using autonomous ADL-probe Gamma Tracer system. The difference between levels of the natural background radiation and natural environment has been pointed out at the different chosen measuring overall research of natural radioactivity at the location of Sar-mountain

  4. Topography and Penetration of the Greenland Ice Sheet Measured with Airborne SAR Interferometry

    DEFF Research Database (Denmark)

    Dall, Jørgen; Madsen, Søren Nørvang; Keller, K.

    2001-01-01

    . The accuracy of the SAR DEM is about 1.5 m. The mean difference between the laser heights and the SAR heights changes from 0 m in the soaked zone to a maximum of 13 m in the percolation zone. This is explained by the fact that the snow in the soaked zone contains liquid water which attenuates the radar signals......, while the transparency of the firn in the percolation zone makes volume scattering dominate at the higher elevations. For the first time, the effective penetration has been measured directly as the difference between the interferometric heights and reference heights obtained with GPS and laser altimetry....

  5. Using Airborne SAR Interferometry to Measure the Elevation of a Greenland Ice Cap

    DEFF Research Database (Denmark)

    Dall, Jørgen; Keller, K.; Madsen, S.N.

    2000-01-01

    A digital elevation model (DEM) of an ice cap in Greenland has been generated from airborne SAR interferometry data, calibrated with a new algorithm, and compared with airborne laser altimetry profiles and carrier-phase differential GPS measurements of radar reflectors deployed on the ice cap...... with GPS data and calibrated laser data....

  6. The artificial object detection and current velocity measurement using SAR ocean surface images

    Science.gov (United States)

    Alpatov, Boris; Strotov, Valery; Ershov, Maksim; Muraviev, Vadim; Feldman, Alexander; Smirnov, Sergey

    2017-10-01

    Due to the fact that water surface covers wide areas, remote sensing is the most appropriate way of getting information about ocean environment for vessel tracking, security purposes, ecological studies and others. Processing of synthetic aperture radar (SAR) images is extensively used for control and monitoring of the ocean surface. Image data can be acquired from Earth observation satellites, such as TerraSAR-X, ERS, and COSMO-SkyMed. Thus, SAR image processing can be used to solve many problems arising in this field of research. This paper discusses some of them including ship detection, oil pollution control and ocean currents mapping. Due to complexity of the problem several specialized algorithm are necessary to develop. The oil spill detection algorithm consists of the following main steps: image preprocessing, detection of dark areas, parameter extraction and classification. The ship detection algorithm consists of the following main steps: prescreening, land masking, image segmentation combined with parameter measurement, ship orientation estimation and object discrimination. The proposed approach to ocean currents mapping is based on Doppler's law. The results of computer modeling on real SAR images are presented. Based on these results it is concluded that the proposed approaches can be used in maritime applications.

  7. Temperature and SAR measurement errors in the evaluation of metallic linear structures heating during MRI using fluoroptic (registered) probes

    Energy Technology Data Exchange (ETDEWEB)

    Mattei, E [Department of Technologies and Health, Italian National Institute of Health, Rome (Italy); Triventi, M [Department of Technologies and Health, Italian National Institute of Health, Rome (Italy); Calcagnini, G [Department of Technologies and Health, Italian National Institute of Health, Rome (Italy); Censi, F [Department of Technologies and Health, Italian National Institute of Health, Rome (Italy); Kainz, W [Center for Devices and Radiological Health, Food and Drug Administration, Rockville, MD (United States); Bassen, H I [Center for Devices and Radiological Health, Food and Drug Administration, Rockville, MD (United States); Bartolini, P [Department of Technologies and Health, Italian National Institute of Health, Rome (Italy)

    2007-03-21

    The purpose of this work is to evaluate the error associated with temperature and SAR measurements using fluoroptic (registered) temperature probes on pacemaker (PM) leads during magnetic resonance imaging (MRI). We performed temperature measurements on pacemaker leads, excited with a 25, 64, and 128 MHz current. The PM lead tip heating was measured with a fluoroptic (registered) thermometer (Luxtron, Model 3100, USA). Different contact configurations between the pigmented portion of the temperature probe and the PM lead tip were investigated to find the contact position minimizing the temperature and SAR underestimation. A computer model was used to estimate the error made by fluoroptic (registered) probes in temperature and SAR measurement. The transversal contact of the pigmented portion of the temperature probe and the PM lead tip minimizes the underestimation for temperature and SAR. This contact position also has the lowest temperature and SAR error. For other contact positions, the maximum temperature error can be as high as -45%, whereas the maximum SAR error can be as high as -54%. MRI heating evaluations with temperature probes should use a contact position minimizing the maximum error, need to be accompanied by a thorough uncertainty budget and the temperature and SAR errors should be specified.

  8. Improved SAR Amplitude Image Offset Measurements for Deriving Three-Dimensional Coseismic Displacements

    KAUST Repository

    Wang, Teng; Jonsson, Sigurjon

    2015-01-01

    Offsets of synthetic aperture radar (SAR) images have played an important role in deriving complete three-dimensional (3-D) surface displacement fields in geoscientific applications. However, offset maps often suffer from multiple outliers and patch-like artifacts, because the standard offset-measurement method is a regular moving-window operation that does not consider the scattering characteristics of the ground. Here, we show that by focusing the offset measurements on predetected strong reflectors, the reliability and accuracy of SAR offsets can be significantly improved. Application to the 2011 Van (Turkey) earthquake reveals a clear deformation signal from an otherwise decorrelated interferogram, making derivation of the 3-D coseismic displacement field possible. Our proposed method can improve mapping of coseismic deformation and other ground displacements, such as glacier flow and landslide movement when strong reflectors exist.

  9. Improved SAR Amplitude Image Offset Measurements for Deriving Three-Dimensional Coseismic Displacements

    KAUST Repository

    Wang, Teng

    2015-02-03

    Offsets of synthetic aperture radar (SAR) images have played an important role in deriving complete three-dimensional (3-D) surface displacement fields in geoscientific applications. However, offset maps often suffer from multiple outliers and patch-like artifacts, because the standard offset-measurement method is a regular moving-window operation that does not consider the scattering characteristics of the ground. Here, we show that by focusing the offset measurements on predetected strong reflectors, the reliability and accuracy of SAR offsets can be significantly improved. Application to the 2011 Van (Turkey) earthquake reveals a clear deformation signal from an otherwise decorrelated interferogram, making derivation of the 3-D coseismic displacement field possible. Our proposed method can improve mapping of coseismic deformation and other ground displacements, such as glacier flow and landslide movement when strong reflectors exist.

  10. Seasonal and multi-year surface displacements measured by DInSAR in a High Arctic permafrost environment

    Science.gov (United States)

    Rudy, Ashley C. A.; Lamoureux, Scott F.; Treitz, Paul; Short, Naomi; Brisco, Brian

    2018-02-01

    Arctic landscapes undergo seasonal and long-term changes as the active layer thaws and freezes, which can result in localized or irregular subsidence leading to the formation of thermokarst terrain. Differential Interferometric Synthetic Aperture Radar (DInSAR) is a technique capable of measuring ground surface displacements resulting from thawing permafrost at centimetre precision and is quickly gaining acceptance as a means of measuring ground displacement in permafrost regions. Using RADARSAT-2 stacked DInSAR data from 2013 and 2015 we determined the magnitude and patterns of land surface change in a continuous permafrost environment. At our study site situated in the Canadian High Arctic, DInSAR seasonal ground displacement patterns were consistent with field observations of permafrost degradation. As expected, many DInSAR values are close to the detection threshold (i.e., 1 cm) and therefore do not indicate significant change; however, DInSAR seasonal ground displacement patterns aligned well with climatological and soil conditions and offer geomorphological insight into subsurface processes in permafrost environments. While our dataset is limited to two years of data representing a three-year time period, the displacements derived from DInSAR provide insight into permafrost change in a High Arctic environment and demonstrate that DInSAR is an applicable tool for understanding environmental change in remote permafrost regions.

  11. Interseismic Deformation along the Red River Fault from InSAR Measurements

    Science.gov (United States)

    Chen, J.; Li, Z.; Clarke, P. J.

    2017-12-01

    The Red River Fault (RRF) zone is a profound geological discontinuity separating South China from Indochina. Right lateral movements along this >900 km fault are considered to accommodate the extrusion of SE China. Crustal deformation monitoring at high resolution is the key to understand the present-day mode of deformation in this zone and its interaction with the adjacent regions. This is the first study to measure the interseismic deformation of the entire fault with ALOS-1/2 and Sentinel-1 observations. Nine ascending tracks of ALOS-1 data between 2007 and 2011 are collected from the Alaska Satellite Facility (ASF), four descending tracks of Sentinel-1 data are acquired every 24 days since October 2014, and ALOS-2 data are being systematically acquired since 2014. The long wavelength (L-band) of ALOS-1/2 and short temporal baseline of Sentinel-1 ensure good coherence to overcome the limitations of heavy vegetation and variable climate in the region. Stacks of interferograms are generated by our automatic processing chain based on the InSAR Scientific Computing Environment (ISCE) software, ionospheric errors are estimated and corrected using the split-spectrum method (Fattahi et al., IEEE Trans. Geosci. Remote Sens., 2017) and the tropospheric delays are calibrated using the Generic Atmospheric Correction Online Service for InSAR (GACOS: http://ceg-research.ncl.ac.uk/v2/gacos) with high-resolution ECMWF products (Yu et al., J. Geophys. Res., 2017). Time series analysis is performed to determine the interseismic deformation rate of the RRF using the in-house InSAR time series with atmospheric estimation model (InSAR TS + AEM) package based on the Small Baseline Subset (SBAS) algorithm. Our results reveal the decrease of slip rate from north to south. We map the interseismic strain rate field to characterize the deformation patterns and seismic hazard throughout the RRF zone.

  12. River Delta Subsidence Measured with Interferometric Synthetic Aperture Radar (InSAR)

    Science.gov (United States)

    Higgins, Stephanie

    This thesis addresses the need for high-resolution subsidence maps of major world river deltas. Driven by a combination of rising water, sediment compaction, and reduced sediment supply due to damming and flood control, many deltas are sinking relative to sea level. A lack of data constraining rates and patterns of subsidence has made it difficult to determine the relative contributions of each factor in any given delta, however, or to assess whether the primary drivers of land subsidence are natural or anthropogenic. In recent years, Interferometric Synthetic Aperture Radar (InSAR) has emerged as a satellite-based technique that can map ground deformation with mm-scale accuracy over thousands of square kilometers. These maps could provide critical insight into the drivers of subsidence in deltas, but InSAR is not typically applied to non-urban delta areas due to the difficulties of performing the technique in wet, vegetated settings. This thesis addresses those difficulties and achieves high-resolution measurements of ground deformation in rural deltaic areas. Chapter 1 introduces the processes that drive relative sea level rise in river deltas and investigates open questions in delta subsidence research. Chapter 2 assesses the performance of InSAR in delta settings and reviews interferogram generation in the context of delta analysis, presenting delta-specific processing details and guiding interpretation in these challenging areas. Chapter 3 applies Differential (D-) InSAR to the coast of the Yellow River Delta in China. Results show that subsidence rates are as high as 250 mm/y due to groundwater extraction at aquaculture facilities, a rate that exceeds local and global average sea level rise by nearly two orders of magnitude and suggests a significant hazard for Asian megadeltas. Chapter 4 applies interferometric stacking and Small Baseline Subset (SBAS)-InSAR to the Ganges-Brahmaputra Delta, Bangladesh. Results show that stratigraphy controls subsidence in

  13. Integrating interferometric SAR data with levelling measurements of land subsidence using geostatistics

    NARCIS (Netherlands)

    Zhou, Y.; Stein, A.; Molenaar, M.

    2003-01-01

    Differential Synthetic Aperture Radar (SAR) interferometric (D-InSAR) data of ground surface deformation are affected by several error sources associated with image acquisitions and data processing. In this paper, we study the use of D-InSAR for quantifying land subsidence due to groundwater

  14. Analysis of the effect of mobile phone base station antenna loading on localized SAR and its consequences for measurements.

    Science.gov (United States)

    Hansson, Björn; Thors, Björn; Törnevik, Christer

    2011-12-01

    In this work, the effect of antenna element loading on the localized specific absorption rate (SAR) has been analyzed for base station antennas. The analysis was conducted in order to determine whether localized SAR measurements of large multi-element base station antennas can be conducted using standardized procedures and commercially available equipment. More specifically, it was investigated if the antenna shifting measurement procedure, specified in the European base station exposure assessment standard EN 50383, will produce accurate localized SAR results for base station antennas larger than the specified measurement phantom. The obtained results show that SAR accuracy is affected by the presence of lossy material within distances of one wavelength from the tested antennas as a consequence of coupling and redistribution of transmitted power among the antenna elements. It was also found that the existing standardized phantom is not optimal for SAR measurements of large base station antennas. A new methodology is instead proposed based on a larger, box-shaped, whole-body phantom. Copyright © 2011 Wiley Periodicals, Inc.

  15. Rapid SAR and GPS Measurements and Models for Hazard Science and Situational Awareness

    Science.gov (United States)

    Owen, S. E.; Yun, S. H.; Hua, H.; Agram, P. S.; Liu, Z.; Moore, A. W.; Rosen, P. A.; Simons, M.; Webb, F.; Linick, J.; Fielding, E. J.; Lundgren, P.; Sacco, G. F.; Polet, J.; Manipon, G.

    2016-12-01

    The Advanced Rapid Imaging and Analysis (ARIA) project for Natural Hazards is focused on rapidly generating higher level geodetic imaging products and placing them in the hands of the solid earth science and local, national, and international natural hazard communities by providing science product generation, exploration, and delivery capabilities at an operational level. Space-based geodetic measurement techniques such as Interferometric Synthetic Aperture Radar (InSAR), Differential Global Positioning System (DGPS), SAR-based change detection, and image pixel tracking have recently become critical additions to our toolset for understanding and mapping the damage caused by earthquakes, volcanic eruptions, landslides, and floods. Analyses of these data sets are still largely handcrafted following each event and are not generated rapidly and reliably enough for response to natural disasters or for timely analysis of large data sets. The ARIA project, a joint venture co-sponsored by California Institute of Technology (Caltech) and by NASA through the Jet Propulsion Laboratory (JPL), has been capturing the knowledge applied to these responses and building it into an automated infrastructure to generate imaging products in near real-time that can improve situational awareness for disaster response. In addition, the ARIA project is developing the capabilities to provide automated imaging and analysis capabilities necessary to keep up with the imminent increase in raw data from geodetic imaging missions planned for launch by NASA, as well as international space agencies. We will present the progress we have made on automating the analysis of SAR data for hazard monitoring and response using data from Sentinel 1a/b as well as continuous GPS stations. Since the beginning of our project, our team has imaged events and generated response products for events around the world. These response products have enabled many conversations with those in the disaster response community

  16. Covariance estimation for dInSAR surface deformation measurements in the presence of anisotropic atmospheric noise

    KAUST Repository

    Knospe, Steffen H G

    2010-04-01

    We study anisotropic spatial autocorrelation in differential synthetic aperture radar interferometric (dInSAR) measurements and its impact on geophysical parameter estimations. The dInSAR phase acquired by the satellite sensor is a superposition of different contributions, and when studying geophysical processes, we are usually only interested in the surface deformation part of the signal. Therefore, to obtain high-quality results, we would like to characterize and/or remove other phase components. A stochastic model has been found to be appropriate to describe atmospheric phase delay in dInSAR images. However, these phase delays are usually modeled as being isotropic, which is a simplification, because InSAR images often show directional atmospheric anomalies. Here, we analyze anisotropic structures and show validation results using both real and simulated data. We calculate experimental semivariograms of the dInSAR phase in several European Remote Sensing satellite-1/2 tandem interferograms. Based on the theory of random functions (RFs), we then fit anisotropic variogram models in the spatial domain, employing Matérn-and Bessel-family correlation functions in nested models to represent complex dInSAR covariance structures. The presented covariance function types, in the statistical framework of stationary RFs, are consistent with tropospheric delay models. We find that by using anisotropic data covariance information to weight dInSAR measurements, we can significantly improve both the precision and accuracy of geophysical parameter estimations. Furthermore, the improvement is dependent on how similar the deformation pattern is to the dominant structure of the anisotropic atmospheric signals. © 2009 IEEE.

  17. Measurement of Subsidence in the Yangbajain Geothermal Fields from TerraSAR-X

    Science.gov (United States)

    Li, Yongsheng; Zhang, Jingfa; Li, Zhenhong

    2016-08-01

    Yangbajain contains the largest geothermal energy power station in China. Geothermal explorations in Yangbajain first started in 1976, and two plants were subsequently built in 1981 and 1986. A large amount of geothermal fluids have been extracted since then, leading to considerable surface subsidence around the geothermal fields. In this paper, InSAR time series analysis is applied to map the subsidence of the Yangbajain geothermal fields during the period from December 2011 to November 2012 using 16 senses of TerraSAR-X stripmap SAR images. Due to its high resolution and short repeat cycle, TerraSAR-X provides detailed surface deformation information at the Yangbajain geothermal fields.

  18. ALGORITHM OF SAR SATELLITE ATTITUDE MEASUREMENT USING GPS AIDED BY KINEMATIC VECTOR

    Institute of Scientific and Technical Information of China (English)

    2007-01-01

    In this paper, in order to improve the accuracy of the Synthetic Aperture Radar (SAR)satellite attitude using Global Positioning System (GPS) wide-band carrier phase, the SAR satellite attitude kinematic vector and Kalman filter are introduced. Introducing the state variable function of GPS attitude determination algorithm in SAR satellite by means of kinematic vector and describing the observation function by the GPS wide-band carrier phase, the paper uses the Kalman filter algorithm to obtian the attitude variables of SAR satellite. Compared the simulation results of Kalman filter algorithm with the least square algorithm and explicit solution, it is indicated that the Kalman filter algorithm is the best.

  19. Measurement of pressure ridges in SAR images of sea ice - Preliminary results on scattering theory

    Science.gov (United States)

    Vesecky, J. F.; Smith, M. P.; Daida, J. M.; Samadani, R.; Camiso, J. C.

    1992-01-01

    Sea ice ridges and keels (hummocks and bummocks) are important in sea ice research for both scientific and practical reasons. A long-term objective is to make quantitative measurements of sea ice ridges using synthetic aperture radar (SAR) images. The preliminary results of a scattering model for sea ice ridge are reported. The approach is through the ridge height variance spectrum Psi(K), where K is the spatial wavenumber, and the two-scale scattering model. The height spectrum model is constructed to mimic height statistics observed with an airborne optical laser. The spectrum model is used to drive a two-scale scattering model. Model results for ridges observed at C- and X-band yield normalized radar cross sections that are 10 to 15 dB larger than the observed cross sections of multiyear ice over the range of angles of incidence from 10 to 70 deg.

  20. Non-interferometric GB-SAR measurement: application to the Vallcebre landslide (eastern Pyrenees, Spain

    Directory of Open Access Journals (Sweden)

    O. Monserrat

    2013-07-01

    Full Text Available In the last decade, ground-based interferometry has proven to be a powerful technique for continuous deformation monitoring of landslides, glaciers, volcanoes, or manmade structures, among others. However, several limitations need to be addressed in order to improve the performances of the technique, especially for long-term monitoring. These limitations include the reduction of measurable points with an increase in the period of observation, the ambiguous nature of the phase measurements, and the influence of the atmospheric phase component. In this paper, a new procedure to process the amplitude component of ground-based synthetic aperture radar (GB-SAR data acquired in discontinuous mode is compared and validated. The use of geometric features of the amplitude images combined with a matching technique will allow the estimation of the displacements over specific targets. Experimental results obtained during 19 months, in eight different campaigns carried out in the active landslide of Vallcebre (eastern Pyrenees, Spain, were analysed. During the observed period, from February 2010 to September 2011, displacements up to 80 cm were measured. The comparison with other surveying technique shows that the precision of the method is below 1 cm.

  1. PolinSAR coherence optimisation for deformation measurement in an agricultural region

    CSIR Research Space (South Africa)

    Engelbrecht, Jeanine

    2015-10-01

    Full Text Available of the scattering processes implied that different phase centres were present in interferograms which introduced a spatially heterogeneous topographic phase contribution. Consequently, the polInSAR techniques are considered to be unsuccessful in enhancing...

  2. The nonstructural protein 8 (nsp8) of the SARS coronavirus interacts with its ORF6 accessory protein

    International Nuclear Information System (INIS)

    Kumar, Purnima; Gunalan, Vithiagaran; Liu Boping; Chow, Vincent T.K.; Druce, Julian; Birch, Chris; Catton, Mike; Fielding, Burtram C.; Tan, Yee-Joo; Lal, Sunil K.

    2007-01-01

    Severe acute respiratory syndrome (SARS) coronavirus (SARS-CoV) caused a severe outbreak in several regions of the world in 2003. The SARS-CoV genome is predicted to contain 14 functional open reading frames (ORFs). The first ORF (1a and 1b) encodes a large polyprotein that is cleaved into nonstructural proteins (nsp). The other ORFs encode for four structural proteins (spike, membrane, nucleocapsid and envelope) as well as eight SARS-CoV-specific accessory proteins (3a, 3b, 6, 7a, 7b, 8a, 8b and 9b). In this report we have cloned the predicted nsp8 gene and the ORF6 gene of the SARS-CoV and studied their abilities to interact with each other. We expressed the two proteins as fusion proteins in the yeast two-hybrid system to demonstrate protein-protein interactions and tested the same using a yeast genetic cross. Further the strength of the interaction was measured by challenging growth of the positive interaction clones on increasing gradients of 2-amino trizole. The interaction was then verified by expressing both proteins separately in-vitro in a coupled-transcription translation system and by coimmunoprecipitation in mammalian cells. Finally, colocalization experiments were performed in SARS-CoV infected Vero E6 mammalian cells to confirm the nsp8-ORF6 interaction. To the best of our knowledge, this is the first report of the interaction between a SARS-CoV accessory protein and nsp8 and our findings suggest that ORF6 protein may play a role in virus replication

  3. SAR: Stroke Authorship Recognition

    KAUST Repository

    Shaheen, Sara

    2015-10-15

    Are simple strokes unique to the artist or designer who renders them? If so, can this idea be used to identify authorship or to classify artistic drawings? Also, could training methods be devised to develop particular styles? To answer these questions, we propose the Stroke Authorship Recognition (SAR) approach, a novel method that distinguishes the authorship of 2D digitized drawings. SAR converts a drawing into a histogram of stroke attributes that is discriminative of authorship. We provide extensive classification experiments on a large variety of data sets, which validate SAR\\'s ability to distinguish unique authorship of artists and designers. We also demonstrate the usefulness of SAR in several applications including the detection of fraudulent sketches, the training and monitoring of artists in learning a particular new style and the first quantitative way to measure the quality of automatic sketch synthesis tools. © 2015 The Eurographics Association and John Wiley & Sons Ltd.

  4. Three-Dimensional Human Bronchial-Tracheal Epithelial Tissue-Like Assemblies (TLAs) as Hosts for Severe Acute Respiratory Syndrome (SARS)-CoV Infection

    Science.gov (United States)

    Suderman, M. T.; McCarthy, M.; Mossell, E.; Watts, D. M.; Peters, C. J.; Shope, R.; Goodwin, T. J.

    2006-01-01

    A three-dimensional (3-D) tissue-like assembly (TLA) of human bronchial-tracheal mesenchymal (HBTC) cells with an overlay of human bronchial epithelial (BEAS-2B) cells was constructed using a NASA Bioreactor to survey the infectivity of SARS-CoV. This TLA was inoculated with a low passage number Urbani strain of SARS-CoV. At selected intervals over a 10-day period, media and cell aliquots of the 3-D TLA were harvested for viral titer assay and for light and electron microscopy examination. All viral titer assays were negative in both BEAS-2B two-dimensional monolayer and TLA. Light microscopy immunohistochemistry demonstrated antigen-antibody reactivity with anti-SARS-CoV polyclonal antibody to spike and nuclear proteins on cell membranes and cytoplasm. Coronavirus Group 2 cross-reactivity was demonstrated by positive reaction to anti-FIPV 1 and anti-FIPV 1 and 2 antibodies. TLA examination by transmission electron microscopy indicated increasing cytoplasmic vacuolation with numerous electron-dense bodies measuring 45 to 270 nm from days 4 through 10. There was no evidence of membrane blebbing, membrane duplication, or fragmentation of organelles in the TLAs. However, progressive disruption of endoplasmic reticulum was observed throughout the cells. Antibody response to SARS-CoV specific spike and nucleocapsid glycoproteins, cross-reactivity with FIPV antibodies, and the cytoplasmic pathology suggests this HBTE TLA model is permissive to SARS-CoV infection.

  5. Sea ice local surface topography from single-pass satellite InSAR measurements: a feasibility study

    Directory of Open Access Journals (Sweden)

    W. Dierking

    2017-08-01

    Full Text Available Quantitative parameters characterizing the sea ice surface topography are needed in geophysical investigations such as studies on atmosphere–ice interactions or sea ice mechanics. Recently, the use of space-borne single-pass interferometric synthetic aperture radar (InSAR for retrieving the ice surface topography has attracted notice among geophysicists. In this paper the potential of InSAR measurements is examined for several satellite configurations and radar frequencies, considering statistics of heights and widths of ice ridges as well as possible magnitudes of ice drift. It is shown that, theoretically, surface height variations can be retrieved with relative errors  ≤  0.5 m. In practice, however, the sea ice drift and open water leads may contribute significantly to the measured interferometric phase. Another essential factor is the dependence of the achievable interferometric baseline on the satellite orbit configurations. Possibilities to assess the influence of different factors on the measurement accuracy are demonstrated: signal-to-noise ratio, presence of a snow layer, and the penetration depth into the ice. Practical examples of sea surface height retrievals from bistatic SAR images collected during the TanDEM-X Science Phase are presented.

  6. Evaluation of the Oh, Dubois and IEM Backscatter Models Using a Large Dataset of SAR Data and Experimental Soil Measurements

    Directory of Open Access Journals (Sweden)

    Mohammad Choker

    2017-01-01

    Full Text Available The aim of this paper is to evaluate the most used radar backscattering models (Integral Equation Model “IEM”, Oh, Dubois, and Advanced Integral Equation Model “AIEM” using a wide dataset of SAR (Synthetic Aperture Radar data and experimental soil measurements. These forward models reproduce the radar backscattering coefficients ( σ 0 from soil surface characteristics (dielectric constant, roughness and SAR sensor parameters (radar wavelength, incidence angle, polarization. The analysis dataset is composed of AIRSAR, SIR-C, JERS-1, PALSAR-1, ESAR, ERS, RADARSAT, ASAR and TerraSAR-X data and in situ measurements (soil moisture and surface roughness. Results show that Oh model version developed in 1992 gives the best fitting of the backscattering coefficients in HH and VV polarizations with RMSE values of 2.6 dB and 2.4 dB, respectively. Simulations performed with the Dubois model show a poor correlation between real data and model simulations in HH polarization (RMSE = 4.0 dB and better correlation with real data in VV polarization (RMSE = 2.9 dB. The IEM and the AIEM simulate the backscattering coefficient with high RMSE when using a Gaussian correlation function. However, better simulations are performed with IEM and AIEM by using an exponential correlation function (slightly better fitting with AIEM than IEM. Good agreement was found between the radar data and the simulations using the calibrated version of the IEM modified by Baghdadi (IEM_B with bias less than 1.0 dB and RMSE less than 2.0 dB. These results confirm that, up to date, the IEM modified by Baghdadi (IEM_B is the most adequate to estimate soil moisture and roughness from SAR data.

  7. SARS - Diagnosis

    Indian Academy of Sciences (India)

    SARS - Diagnosis. Mainly by exclusion of known causes of atypical pneumonia; * X ray Chest; * PCR on body fluids- primers defined by WHO centres available from website.-ve result does not exclude SARS. * Sequencing of amplicons; * Viral Cultures – demanding; * Antibody tests.

  8. A study of the exposure of subjects to RF radiation during MRI examinations. Measurement of the SAR of head parts and the evaluation of the measured values

    International Nuclear Information System (INIS)

    Yamada, Masayuki; Koga, Sukehiko; Sugie, Masami; Kinoshita, Kazuo; Anno, Hirofumi; Katada, Kazuhiro.

    1996-01-01

    Recently, as the fast spin echo technique has become prevailing among all the techniques in this line, there has been an increasing interest in the exposure of subjects to radiofrequency (RF) radiation during magnetic resonance imaging (MRI) examinations. On the other hand, there have been no reports about the safety of the MRI examination in Japan. For this reason, in this study, the authors aimed to evaluate the extent of the exposure of subjects to RF radiation during MRI examinations, and measured the specific absorption rate (SAR) of spherical phantoms, which assumed to be adult heads, by using the procedures set forth in two safety guidelines respectively: the 1988 Guideline of the Food and Drug Administration (FDA), and the 1995 Standards of the International Electrotechnical Commission (IEC). As a result of the measurement, it was found that the highest value of the SAR was 1.361 W/kg, which stayed far below the upper limits set forth by the respective safety guidelines referred to in the above. However, the measured values of the SAR varied depending on the respective measuring procedures. As both the measuring procedures are equivalent theoretically, the authors consider the variance to be very important. (author)

  9. SAR: Stroke Authorship Recognition

    KAUST Repository

    Shaheen, Sara; Rockwood, Alyn; Ghanem, Bernard

    2015-01-01

    Are simple strokes unique to the artist or designer who renders them? If so, can this idea be used to identify authorship or to classify artistic drawings? Also, could training methods be devised to develop particular styles? To answer these questions, we propose the Stroke Authorship Recognition (SAR) approach, a novel method that distinguishes the authorship of 2D digitized drawings. SAR converts a drawing into a histogram of stroke attributes that is discriminative of authorship. We provide extensive classification experiments on a large variety of data sets, which validate SAR's ability to distinguish unique authorship of artists and designers. We also demonstrate the usefulness of SAR in several applications including the detection of fraudulent sketches, the training and monitoring of artists in learning a particular new style and the first quantitative way to measure the quality of automatic sketch synthesis tools. © 2015 The Eurographics Association and John Wiley & Sons Ltd.

  10. A study of exposure to RF radiation during MRI examinations. 2. A comparison of two procedures measuring the whole body SAR

    International Nuclear Information System (INIS)

    Yamada, Masayuki; Imaeda, Isao; Koga, Sukehiko; Sugie, Masami; Anno, Hirofumi; Kinoshita, Kazuo; Okada, Tatsuhiko; Endou, Yukio; Katada, Kazuhiro.

    1997-01-01

    The purpose of this study is to evaluate exposure to radiofrequency (RF) radiation during magnetic resonance imaging (MRI) examinations. Particularly, in this paper, the authors compared the measuring procedures of a whole body specific absorption rate (SAR) set forth in two safety guidelines respectively: the safety guideline of MRI equipments in Japan which based on the 1988 guideline of the Food and Drug Administration (FDA), and the 1995 standard of the International Electrotechnical Commission (IEC). As a result of the measurement, the measuring procedure set forth in the Japanese guideline underestimated the whole body SAR of a torso phantom in a tuneless type QD coil. The result of our experiment clearly showed that the measuring procedure set forth in the Japanese guideline did not adjust to the tuneless type QD coil. Therefore, the authors recommended ''the pulse energy method'' which is provided by the IEC standard as a measuring procedure of the whole body SAR. (author)

  11. Dynamic behavior of the Bering Glacier-Bagley icefield system during a surge, and other measurements of Alaskan glaciers with ERS SAR imagery

    Science.gov (United States)

    Lingle, Craig S.; Fatland, Dennis R.; Voronina, Vera A.; Ahlnaes, Kristina; Troshina, Elena N.

    1997-01-01

    ERS-1 synthetic aperture radar (SAR) imagery was employed for the measurement of the dynamics of the Bagley icefield during a major surge in 1993-1994, the measurement of ice velocities on the Malaspina piedmont glacier during a quiescent phase between surges, and for mapping the snow lines and the position of the terminus of Nabesna glacier on Mount Wrangell (a 4317 m andesitic shield volcano) in the heavily glacierized Saint Elias and Wrangell Mountains of Alaska. An overview and summary of results is given. The methods used include interferometry, cross-correlation of sequential images, and digitization of boundaries using terrain-corrected SAR imagery.

  12. Retrospective dosimetry: Preliminary use of the single aliquot regeneration (SAR) protocol for the measurement of quartz dose in young house bricks

    DEFF Research Database (Denmark)

    Banerjee, D.; Bøtter-Jensen, L.; Murray, A.S.

    1999-01-01

    with the expected values based on their known age and confirms the absolute accuracy of the SAR method. It is concluded that a similar to 18 mGy fallout dose component can be detected on a background of similar to 100 mGy; this detection limit is controlled by uncertainties in the natural dose rare measurement......In retrospective dosimetry, the total dose absorbed by some pre-existing dosemeters, such as house bricks or tiles, is used to derive the dose to the population arising from a nuclear accident. This paper uses the newly developed SAR protocol to determine the total dose in young house bricks from...... the vicinity of the Chernobyl reactor site and from Roskilde, Denmark. For these samples, it is shown that high precision (similar to 1%) on the mean estimates of total dose can be achieved with similar to 20 independent measurements. The SAR total dose estimates of two Danish house bricks agree...

  13. Impact of the interfaces for wind and wave modeling - interpretation using COAWST, SAR and point measurements

    DEFF Research Database (Denmark)

    Air and sea interacts, where winds generate waves and waves affect the winds. This topic is ever relevant for offshore functions such as shipping, portal routines, wind farm operation and maintenance. In a coupled modeling system, the atmospheric modeling and the wave modeling interfere with each...... use the stress directly, thus avoiding the uncertainties caused by parameterizations. This study examines the efficiency of the wave impact transfer to the atmospheric modeling through the two types of interfaces, roughness length and stress, through the coupled......-ocean-atmosphere-wave-sediment-transport (COAWST) modeling system. The roughness length has been calculated using seven schemes (Charnock, Fan, Oost, Drennen, Liu, Andreas, Taylor-Yelland). The stress approach is applied through a wave boundary layer model in SWAN. The experiments are done to a case where the Synthetic Aperture Radar (SAR) image...

  14. Induction of Th1 type response by DNA vaccinations with N, M, and E genes against SARS-CoV in mice

    International Nuclear Information System (INIS)

    Jin Huali; Xiao Chong; Chen Ze; Kang Youmin; Ma Yijie; Zhu Kaichun; Xie Qifa; Tu Yixian; Yu Yang; Wang Bin

    2005-01-01

    Vaccination against the SARS-CoV infection is an attractive means to control the spread of viruses in public. In this study, we employed a DNA vaccine technology with the levamisole, our newly discovered chemical adjuvant, to generate Th1 type of response. To avoid the enhancement antibody issue, genes encoding the nucleocapsid, membrane, and envelope protein of SARS-CoV were cloned and their expressions in mammalian cells were determined. After the intramuscular introduction into animals, we observed that the constructs of the E, M, and N genes could induce high levels of specific antibodies, T cell proliferations, IFN-γ, DTH responses, and in vivo cytotoxic T cells activities specifically against SARS-CoV antigens. The highest immune responses were generated by the construct encoding the nucleocapsid protein. The results suggest that the N, M, and E genes could be used as the targets to prevent SARS-CoV infection in the DNA vaccine development

  15. Improved oceanographic measurements fom SAR altimetry: Results and scientific roadmap from ESA cryosat plus for oceans project

    DEFF Research Database (Denmark)

    Cotton, P. D.; Andersen, Ole Baltazar; Stenseng, Lars

    The ESA CryoSat mission is the first space mission to carry a radar altimeter that can operate in Synthetic Aperture Radar (SAR) mode. It thus provides the first opportunity to test and evaluate, using real data, the significant potential benefits of SAR altimetry for ocean applications. The obje...

  16. The sequence of the Helicoverpa armigera single nucleocapsid nucleopolyhedrovirus genome

    NARCIS (Netherlands)

    Chen, X.; IJkel, W.F.J.; Tarchini, R.; Sun, X.; Sandbrink, H.; Wang, H.; Peters, S.; Zuidema, D.; Klein Lankhorst, R.; Vlak, J.M.; Hu, Z.

    2001-01-01

    The nucleotide sequence of the Helicoverpa armigera single-nucleocapsid nucleopolyhedrovirus (HaSNPV) DNA genome was determined and analysed. The circular genome encompasses 131 403 bp, has a G C content of 39.1 molnd contains five homologous regions with a unique pattern of repeats.

  17. Nucleocytoplasmic transport of nucleocapsid proteins of enveloped RNA viruses

    Directory of Open Access Journals (Sweden)

    Wahyu eWulan

    2015-06-01

    Full Text Available Most viruses with non-segmented single stranded RNA genomes complete their life cycle in the cytoplasm of infected cells. However, despite undergoing replication in the cytoplasm, the structural proteins of some of these RNA viruses localize to the nucleus at specific times in the virus life cycle, primarily early in infection. Limited evidence suggests that this enhances successful viral replication by interfering with or inhibiting the host antiviral response. Nucleocapsid proteins of RNA viruses have a well-established, essential cytoplasmic role in virus replication and assembly. Intriguingly, nucleocapsid proteins of some RNA viruses also localize to the nucleus/nucleolus of infected cells. Their nuclear function is less well understood although significant advances have been made in recent years. This review will focus on the nucleocapsid protein of cytoplasmic enveloped RNA viruses, including their localization to the nucleus/nucleolus and function therein. A greater understanding of the nuclear localization of nucleocapsid proteins has the potential to enhance therapeutic strategies as it can be a target for the development of live-attenuated vaccines or antiviral drugs.

  18. Coronavirus nucleocapsid proteins assemble constitutively in high molecular oligomers

    NARCIS (Netherlands)

    Cong, Yingying; Kriegenburg, Franziska; de Haan, Cornelis A. M.; Reggiori, Fulvio

    2017-01-01

    Coronaviruses (CoV) are enveloped viruses and rely on their nucleocapsid N protein to incorporate the positive-stranded genomic RNA into the virions. CoV N proteins form oligomers but the mechanism and relevance underlying their multimerization remain to be fully understood. Using in vitro pull-down

  19. Preliminary Analysis of Chinese GF-3 SAR Quad-Polarization Measurements to Extract Winds in Each Polarization

    Directory of Open Access Journals (Sweden)

    Lin Ren

    2017-11-01

    Full Text Available This study analyzed the noise equivalent sigma zero (NESZ and ocean wind sensitivity for Chinese C-band Gaofen-3 (GF-3 quad-polarization synthetic aperture radar (SAR measurements to facilitate further operational wind extraction from GF-3 data. Data from the GF-3 quad-polarization SAR and collocated winds from both NOAA/NCEP Global Forecast System (GFS atmospheric model and National Data Buoy Center (NDBC buoys were used in the analysis. For NESZ, the co-polarization was slightly higher compared to the cross-polarization. Regarding co-polarization and cross-polarization, NESZ was close to RadarSAT-2 and Sentinel-1 A. Wind sensitivity was analyzed by evaluating the dependence on winds in terms of normalized radar cross-sections (NRCS and polarization combinations. The closest geophysical model function (GMF and the polarization ratio (PR model to GF-3 data were determined by comparing data and the model results. The dependence of co-polarized NRCS on wind speed and azimuth angle was consistent with the proposed GMF models. The combination of CMOD5 and CMOD5.N was considered to be the closest GMF in co-polarization. The cross-polarized NRCS exhibited a strong linear relationship with moderate wind speeds higher than 4 m·s−1, but a weak correlation with the azimuth angle. The proposed model was considered as the closest GMF in cross-polarization. For polarization combinations, PR and polarization difference (PD were considered. PR increased only with the incidence angle, whereas PD increased with wind speed and varied with azimuth angle. There were three very close PR models and each can be considered as the closest. Preliminary results indicate that GF-3 quad-polarization data are valid and have the ability to extract winds in each polarization.

  20. Deformation responses of slow moving landslides to seasonal rainfall in the Northern Apennines, measured by InSAR

    Science.gov (United States)

    Bayer, Benedikt; Simoni, Alessandro; Mulas, Marco; Corsini, Alessandro; Schmidt, David

    2018-05-01

    Slow moving landslides are widespread geomorphological features in the Northern Apennines of Italy where they represent one of the main landscape forming processes. The lithology of the Northern Apennines fold and thrust belt is characterized by alternations of sandstone, siltstone and clayshales, also known as flysch, and clay shales with a chaotic block in matrix fabric, which are often interpreted as tectonic or sedimentary mélanges. While flysch rocks with a high pelitic fraction host earthslides that occasionally evolve into flow like movements, earthflows are the dominant landslide type in chaotic clay shales. In the present work, we document the kinematic response to rainfall of landslides in these different lithologies using radar interferometry. The study area includes three river catchments in the Northern Apennines. Here, the Mediterranean climate is characterized by two wet seasons during autumn and spring respectively, separated by dry summers and winters with moderate precipitation. We use SAR imagery from the X-band satellite COSMO SkyMed and from the C-band satellite Sentinel 1 to retrieve spatial displacement measurements between 2009 and 2016 for 25 landslides in our area of interest. We also document detailed temporal and spatial deformation signals for eight representative landslides, although the InSAR derived deformation signal is only well constrained by our dataset during the years 2013 and 2015. In spring 2013, long enduring rainfalls struck the study area and numerous landslide reactivations were documented by the regional authorities. During 2013, we measured higher displacement rates on the landslides in pelitic flysch formations compared to the earthflows in the clay shales. Slower mean velocities were measured on most landslides during 2015. We analyse the temporal deformation signal of our eight representative landslides and compare the temporal response to precipitation. We show that earthslides in pelitic flysch formations

  1. Constraints on Pressure-Driven Flow Beneath Askja Volcano, Iceland, from Microgravity and InSAR Measurements

    Science.gov (United States)

    Giniaux, J. M.; Hooper, A. J.; Dumont, S.; Bagnardi, M.; Drouin, V.; Sigmundsson, F.

    2017-12-01

    Askja is an active volcano in the Northern Volcanic Zone of Iceland, lying within a spreading segment of the mid-Atlantic ridge. There have been at least 40 eruptions in the last 1100 years, including the 1875 VEI-5 caldera-forming Plinian event. However the current state of the complex magmatic system and the probability of an eruption in the near future are not well understood. Steadily decaying subsidence within the main caldera has been recorded with a variety of geodetic measurements since at least 1983. It has been postulated that rifting extension and shallow magmatic processes, e.g. outflow and/or crystallisation, could be responsible for this subsidence. All models using surface deformation data agree that there is at least one shallow source at 2-2.5 km b.s.l. (3-3.5 km below the surface), shrinking at a rate of approximately -1.4 to -2.1x106 km3yr-1. This depth is consistent with results from seismic tomography, which also reveal the presence of two melt storage regions at about 5-7 and 9-11 km b.s.l. The subsidence has been accompanied by a gravity decrease (mass loss) since at least 1988, except for a measured increase between 2007 and 2008. These gravity signals have been interpreted as the result of magma drainage and magma intrusion, respectively. Here, we present new gravity results from 2015-2017, measured over an extended network within the caldera, together with new InSAR time series results. We use these data to model the location, depth, volume and mass changes beneath Askja from 2002-2017. Our results show a gravity decrease over a larger area than previously recognised, implying greater mass loss than previously thought. The InSAR results show a gradually decreasing rate of subsidence, consistent with earlier results from levelling and GPS, but the spatial pattern is more complicated than a simple spherical source would imply. Taken together the volume and mass decreases can be explained by magmatic drainage from shallow to deeper reservoirs

  2. Covariance estimation for dInSAR surface deformation measurements in the presence of anisotropic atmospheric noise

    KAUST Repository

    Knospe, Steffen H G; Jonsson, Sigurjon

    2010-01-01

    anomalies. Here, we analyze anisotropic structures and show validation results using both real and simulated data. We calculate experimental semivariograms of the dInSAR phase in several European Remote Sensing satellite-1/2 tandem interferograms. Based

  3. Performance Analysis of Measurement Inaccuracies of IMU/GPS on Airborne Repeat-pass Interferometric SAR in the Presence of Squint

    Directory of Open Access Journals (Sweden)

    Deng Yuan

    2014-08-01

    Full Text Available In the MOtion COmpensation (MOCO approach to airborne repeat-pass interferometric Synthetic Aperture Radar (SAR based on motion measurement data, the measurement inaccuracies of Inertial Measurement Unit/Global Positioning System (IMU/GPS and the positioning errors of the target, which may contribute to the residual uncompensated motion errors, affect the imaging result and interferometric measurement. Considering the effects of the two types of error, this paper builds a mathematical model of residual motion errors in presence of squint, and analyzes the effects on the residual motion errors induced by the measurement inaccuracies of IMU/GPS and the positioning errors of the target. In particular, the effects of various measurement inaccuracies of IMU/GPS on interferometric SAR image quality, interferometric phase, and digital elevation model precision are disscussed. Moreover, the paper quantitatively researches the effects of residual motion errors on airborne repeat-pass interferometric SAR through theoretical and simulated analyses and provides theoretical bases for system design and signal processing.

  4. Interacting partners of M-PMV nucleocapsid-dUTPase

    Czech Academy of Sciences Publication Activity Database

    Németh-Pongrácz, V.; Snášel, Jan; Rumlová, Michaela; Pichová, Iva; Vértessy, B. G.

    2006-01-01

    Roč. 25, č. 9/11 (2006), s. 1197-1200 ISSN 1525-7770 R&D Projects: GA MŠk 1M0508; GA ČR GP203/05/P557 Institutional research plan: CEZ:AV0Z40550506 Keywords : dUTPase * nucleocapsid * fusion protein * preintegration complex Subject RIV: CE - Biochemistry Impact factor: 0.671, year: 2006

  5. New insights into the 2012 Emilia (Italy) seismic sequence through advanced numerical modeling of ground deformation InSAR measurements

    Science.gov (United States)

    Tizzani, P.; Castaldo, R.; Solaro, G.; Pepe, S.; Bonano, M.; Casu, F.; Manunta, M.; Manzo, M.; Pepe, A.; Samsonov, S.; Lanari, R.; Sansosti, E.

    2013-05-01

    We provide new insights into the two main seismic events that occurred in 2012 in the Emilia region, Italy. We extend the results from previous studies based on analytical inversion modeling of GPS and RADARSAT-1 InSAR measurements by exploiting RADARSAT-2 data. Moreover, we benefit from the available large amount of geological and geophysical information through finite element method (FEM) modeling implemented in a structural-mechanical context to investigate the impact of known buried structures on the modulation of the ground deformation field. We find that the displacement pattern associated with the 20 May event is consistent with the activation of a single fault segment of the inner Ferrara thrust, in good agreement with the analytical solution. In contrast, the interpretation of the 29 May episode requires the activation of three different fault segments and a block roto-translation of the Mirandola anticline. The proposed FEM-based methodology is applicable to other seismic areas where the complexity of buried structures is known and plays a fundamental role in the modulation of the associated surface deformation pattern.

  6. Antibody study in canine distemper virus nucleocapsid protein gene-immunized mice.

    Science.gov (United States)

    Yuan, B; Li, X Y; Zhu, T; Yuan, L; Hu, J P; Chen, J; Gao, W; Ren, W Z

    2015-04-10

    The gene for the nucleocapsid (N) protein of canine distemper virus was cloned into the pMD-18T vector, and positive recombinant plasmids were obtained by enzyme digestion and sequencing. After digestion by both EcoRI and KpnI, the plasmid was directionally cloned into the eukaryotic expression vector pcDNA; the positive clone pcDNA-N was screened by electrophoresis and then transfected into COS-7 cells. Immunofluorescence analysis results showed that the canine distemper virus N protein was expressed in the cytoplasm of transfected COS-7 cells. After emulsification in Freund's adjuvant, the recombinant plasmid pcDNA-N was injected into the abdominal cavity of 8-week-old BABL/c mice, with the pcDNA original vector used as a negative control. Mice were immunized 3 times every 2 weeks. The blood of immunized mice was drawn 2 weeks after completing the immunizations to measure titer levels. The antibody titer in the pcDNA-N test was 10(1.62 ± 0.164), while in the control group this value was 10(0.52 ± 0.56), indicating that specific humoral immunity was induced in canine distemper virus nucleocapsid protein-immunized mice.

  7. Post-Eruption Deformation Processes Measured Using ALOS-1 and UAVSAR InSAR at Pacaya Volcano, Guatemala

    Directory of Open Access Journals (Sweden)

    Lauren N. Schaefer

    2016-01-01

    Full Text Available Pacaya volcano is a persistently active basaltic cone complex located in the Central American Volcanic Arc in Guatemala. In May of 2010, violent Volcanic Explosivity Index-3 (VEI-3 eruptions caused significant topographic changes to the edifice, including a linear collapse feature 600 m long originating from the summit, the dispersion of ~20 cm of tephra and ash on the cone, the emplacement of a 5.4 km long lava flow, and ~3 m of co-eruptive movement of the southwest flank. For this study, Interferometric Synthetic Aperture Radar (InSAR images (interferograms processed from both spaceborne Advanced Land Observing Satellite-1 (ALOS-1 and aerial Uninhabited Aerial Vehicle Synthetic Aperture Radar (UAVSAR data acquired between 31 May 2010 and 10 April 2014 were used to measure post-eruptive deformation events. Interferograms suggest three distinct deformation processes after the May 2010 eruptions, including: (1 subsidence of the area involved in the co-eruptive slope movement; (2 localized deformation near the summit; and (3 emplacement and subsequent subsidence of about a 5.4 km lava flow. The detection of several different geophysical signals emphasizes the utility of measuring volcanic deformation using remote sensing techniques with broad spatial coverage. Additionally, the high spatial resolution of UAVSAR has proven to be an excellent compliment to satellite data, particularly for constraining motion components. Measuring the rapid initiation and cessation of flank instability, followed by stabilization and subsequent influence on eruptive features, provides a rare glimpse into volcanic slope stability processes. Observing these and other deformation events contributes both to hazard assessment at Pacaya and to the study of the stability of stratovolcanoes.

  8. Improved oceanographic measurements with cryosat sar altimetry: Application to the coastal zone and arctic

    DEFF Research Database (Denmark)

    Cotton, P. D.; Garcia, P. N.; Cancet, M.

    in the CryoSat Plus for Oceans project (CP4O), each investigating different aspects of the opportunities offered by this new technology. The first two studies address the coastal zone, a critical region for providing a link between open-ocean and shelf sea measurements with those from coastal in......, a thorough analysis was made of the performance of “SAR” altimeter data (delay-Doppler processed) in the coastal zone. This quantified the performance, confirming the significant improvement over “conventional” pulse-limited altimetry. In the second study a processing scheme was developed with CryoSat SARin......-situ measurements, in particular tide gauges. Although much has been achieved in recent years through the Coastal Altimetry community, (http://www.coastalt.eu/community) there is a limit to the capabilities of pulse-limited altimetry which often leaves an un-measured “white strip” right at the coastline. Firstly...

  9. Evaluation of the subsidence based on dInSAR and GPS measurements near Karviná, Czech Republic

    Czech Academy of Sciences Publication Activity Database

    Kadlečík, Pavel; Kajzar, Vlastimil; Nekvasilová, Z.; Wegmüller, U.; Doležalová, Hana

    2015-01-01

    Roč. 50, č. 1 (2015), s. 51-61 ISSN 0300-5402 R&D Projects: GA MŠk(CZ) LC506; GA MŠk(CZ) LO1406 Institutional support: RVO:67985891 ; RVO:68145535 Keywords : InSAR * subsidence * Karviná region * undermining Subject RIV: DE - Earth Magnetism, Geodesy, Geography

  10. SARS-related Perceptions in Hong Kong

    OpenAIRE

    Lau, Joseph T.F.; Yang, Xilin; Pang, Ellie; Tsui, H.Y.; Wong, Eric; Wing, Yun Kwok

    2005-01-01

    To understand different aspects of community responses related to severe acute respiratory syndrome (SARS), 2 population-based, random telephone surveys were conducted in June 2003 and January 2004 in Hong Kong. More than 70% of respondents would avoid visiting hospitals or mainland China to avoid contracting SARS. Most respondents believed that SARS could be transmitted through droplets, fomites, sewage, and animals. More than 90% believed that public health measures were efficacious means o...

  11. Forecasting slope failures from space-based synthetic aperture radar (SAR) measurements

    Science.gov (United States)

    Wasowski, J.; Bovenga, F.; Nutricato, R.; Nitti, D. O.; Chiaradia, M. T.; Tijani, K.; Morea, A.

    2017-12-01

    New space-borne radar sensors enable multi-scale monitoring of potentially unstable slopes thanks to wide-area coverage (tens of thousands km2), regular long-term image acquisition schedule with increasing re-visit frequency (weekly to daily), and high measurement precision (mm). In particular, the recent radar satellite missions e.g., COSMO-SkyMed (CSK), Sentinel-1 (S-1) and improved multi-temporal interferometry (MTI) processing techniques allow timely delivery of information on slow ground surface displacements. Here we use two case study examples to show that it is possible to capture pre-failure slope strains through long-term MTI-based monitoring. The first case is a retrospective investigation of a huge 500ML m3 landslide, which occurred in Sept. 2016 in a large, active open-cast coal mine in central Europe. We processed over 100 S-1 images acquired since Fall 2014. The MTI results showed that the slope that failed had been unstable at least since 2014. Importantly, we detected consistent displacement trends and trend changes, which can be used for slope failure forecasting. Specifically, we documented significant acceleration in slope surface displacement in the two months preceding the catastrophic failure. The second case of retrospectively captured pre-failure slope strains regards our earlier study of a small 50 m long landslide, which occurred on Jan. 2014 and caused the derailment of a train on the railway line connecting NW Italy to France. We processed 56 CSK images acquired from Fall 2008 to Spring 2014. The MTI results revealed pre-failure displacements of the engineering structures on the slope subsequently affected by the 2014 slide. The analysis of the MTI time series further showed that the displacements had been occurring since 2009. This information could have been used to forewarn the railway authority about the slope instability hazard. The above examples indicate that more frequent and consistent image acquisitions by the new radar

  12. SARS-related perceptions in Hong Kong.

    Science.gov (United States)

    Lau, Joseph T F; Yang, Xilin; Pang, Ellie; Tsui, H Y; Wong, Eric; Wing, Yun Kwok

    2005-03-01

    To understand different aspects of community responses related to severe acute respiratory syndrome (SARS), 2 population-based, random telephone surveys were conducted in June 2003 and January 2004 in Hong Kong. More than 70% of respondents would avoid visiting hospitals or mainland China to avoid contracting SARS. Most respondents believed that SARS could be transmitted through droplets, fomites, sewage, and animals. More than 90% believed that public health measures were efficacious means of prevention; 40.4% believed that SARS would resurge in Hong Kong; and approximately equals 70% would then wear masks in public places. High percentages of respondents felt helpless, horrified, and apprehensive because of SARS. Approximately 16% showed signs of posttraumatic symptoms, and approximately equals 40% perceived increased stress in family or work settings. The general public in Hong Kong has been very vigilant about SARS but needs to be more psychologically prepared to face a resurgence of the epidemic.

  13. Integrated analysis of differential interferometric synthetic aperture radar (DInSAR) and geological data for measuring deformation movement of Kaligarang fault, Semarang-Indonesia

    Science.gov (United States)

    Prasetyo, Y.; Fakhrudin, Warasambi, S. M.

    2016-05-01

    Semarang is one of the densely populated city in Central Java which is has Kaligarang's fault. It is lie in Kaligarang River and across several dense urban settlement. The position of Kaligarang's river itself divides in the direction nearly north-south city of Semarang. The impact of the fault can be seen in severals indication such as a land subsidence phenomenon in Tinjomoyo village area which is make impact to house and road destruction. In this research, we have used combination methods between InSAR, DinSAR and geomorphology (geology data) where is this techniques used to identity the fault area and estimate Kaligarang's fault movement velocity. In fault movement velocity observation, we only compute the movement in vertical with neglect horizontal movement. The data used in this study of one pair ALOS PALSAR level 1.0 which was acquired on June 8, 2007and 10 of September 2009. Besides that third ALOS PALSAR earlier, also used data of SRTM DEM 4th version, is used for the correction of the topography. The use of the three methods already mentioned earlier have different functions. For the lnSAR method used for the establishment of a digital model in Semarang. After getting high models digital city of Semarang, the identification process can be done layout, length, width and area of the Kaligarang fault using geomorphology. Results of such identification can be calculated using the rate of deformation and fault movement. From the result generated DinSAR method of land subsidence rate between 3 em to II em. To know the truth measurement that used DinSAR method, is performed with the decline of validation that measured using GPS. After validating obtained standard deviation of 3,073 em. To estimate the Kaligarang's fault pattern and direction is using the geomorphology method. The results that Kaligarang's is an active fault that has fault strike slip as fault pattern. It makes this research is useful because could be used as an inquick assessment in fault

  14. The management of scarce water resources using GNSS, InSAR and in-situ micro gravity measurements as monitoring tools

    CSIR Research Space (South Africa)

    Wonnacott, R

    2015-08-01

    Full Text Available of Geomatics, Vol. 4, No. 3, August 2015 213  The management of scarce water resources using GNSS, InSAR and in-situ micro gravity measurements as monitoring tools Richard Wonnacott1, Chris Hartnady1, Jeanine Engelbrecht2 1Umvoto Africa (Pty) Ltd... shown to provide a useful tool for the measurement and monitoring of ground subsidence resulting from numerous natural and anthropogenic causes including the abstraction of groundwater and gas. Zerbini et al (2007) processed and combined data from a...

  15. Porcine Epidemic Diarrhea Virus 3C-Like Protease-Mediated Nucleocapsid Processing: Possible Link to Viral Cell Culture Adaptability.

    Science.gov (United States)

    Jaru-Ampornpan, Peera; Jengarn, Juggragarn; Wanitchang, Asawin; Jongkaewwattana, Anan

    2017-01-15

    Porcine epidemic diarrhea virus (PEDV) causes severe diarrhea and high mortality rates in newborn piglets, leading to massive losses to the swine industry worldwide during recent epidemics. Intense research efforts are now focusing on defining viral characteristics that confer a growth advantage, pathogenicity, or cell adaptability in order to better understand the PEDV life cycle and identify suitable targets for antiviral or vaccine development. Here, we report a unique phenomenon of PEDV nucleocapsid (N) cleavage by the PEDV-encoded 3C-like protease (3Cpro) during infection. The identification of the 3Cpro cleavage site at the C terminus of N supported previous observations that PEDV 3Cpro showed a substrate requirement slightly different from that of severe acute respiratory syndrome coronavirus (SARS-CoV) 3Cpro and revealed a greater flexibility in its substrate recognition site. This cleavage motif is present in the majority of cell culture-adapted PEDV strains but is missing in emerging field isolates. Remarkably, reverse-genetics-derived cell culture-adapted PEDV AVCT12 harboring uncleavable N displayed growth retardation in Vero E6-APN cells compared to the wild-type virus. These observations altogether shed new light on the investigation and characterization of the PEDV nucleocapsid protein and its possible link to cell culture adaptation. Recurrent PEDV outbreaks have resulted in enormous economic losses to swine industries worldwide. To gain the upper hand in combating this disease, it is necessary to understand how this virus replicates and evades host immunity. Characterization of viral proteins provides important clues to mechanisms by which viruses survive and spread. Here, we characterized an intriguing phenomenon in which the nucleocapsids of some PEDV strains are proteolytically processed by the virally encoded main protease. Growth retardation in recombinant PEDV carrying uncleavable N suggests a replication advantage provided by the cleavage

  16. Transient oligomerization of the SARS-CoV N protein--implication for virus ribonucleoprotein packaging.

    Science.gov (United States)

    Chang, Chung-ke; Chen, Chia-Min Michael; Chiang, Ming-hui; Hsu, Yen-lan; Huang, Tai-huang

    2013-01-01

    The nucleocapsid (N) phosphoprotein of the severe acute respiratory syndrome coronavirus (SARS-CoV) packages the viral genome into a helical ribonucleocapsid and plays a fundamental role during viral self-assembly. The N protein consists of two structural domains interspersed between intrinsically disordered regions and dimerizes through the C-terminal structural domain (CTD). A key activity of the protein is the ability to oligomerize during capsid formation by utilizing the dimer as a building block, but the structural and mechanistic bases of this activity are not well understood. By disulfide trapping technique we measured the amount of transient oligomers of N protein mutants with strategically located cysteine residues and showed that CTD acts as a primary transient oligomerization domain in solution. The data is consistent with the helical oligomer packing model of N protein observed in crystal. A systematic study of the oligomerization behavior revealed that altering the intermolecular electrostatic repulsion through changes in solution salt concentration or phosphorylation-mimicking mutations affects oligomerization propensity. We propose a biophysical mechanism where electrostatic repulsion acts as a switch to regulate N protein oligomerization.

  17. Transient oligomerization of the SARS-CoV N protein--implication for virus ribonucleoprotein packaging.

    Directory of Open Access Journals (Sweden)

    Chung-ke Chang

    Full Text Available The nucleocapsid (N phosphoprotein of the severe acute respiratory syndrome coronavirus (SARS-CoV packages the viral genome into a helical ribonucleocapsid and plays a fundamental role during viral self-assembly. The N protein consists of two structural domains interspersed between intrinsically disordered regions and dimerizes through the C-terminal structural domain (CTD. A key activity of the protein is the ability to oligomerize during capsid formation by utilizing the dimer as a building block, but the structural and mechanistic bases of this activity are not well understood. By disulfide trapping technique we measured the amount of transient oligomers of N protein mutants with strategically located cysteine residues and showed that CTD acts as a primary transient oligomerization domain in solution. The data is consistent with the helical oligomer packing model of N protein observed in crystal. A systematic study of the oligomerization behavior revealed that altering the intermolecular electrostatic repulsion through changes in solution salt concentration or phosphorylation-mimicking mutations affects oligomerization propensity. We propose a biophysical mechanism where electrostatic repulsion acts as a switch to regulate N protein oligomerization.

  18. Improving older adults' knowledge and practice of preventive measures through a telephone health education during the SARS epidemic in Hong Kong: a pilot study.

    Science.gov (United States)

    Chan, Sophia S C; So, Winnie K W; Wong, David C N; Lee, Angel C K; Tiwari, Agnes

    2007-09-01

    The outbreak of severe acute respiratory syndrome (SARS) in Hong Kong posed many challenges for health promotion activities among a group of older adults with low socio-economic status (SES). With concerns that this vulnerable group could be at higher risk of contracting the disease or spreading it to others, the implementation of health promotion activities appropriate to this group was considered to be essential during the epidemic. To assess the effectiveness of delivering a telephone health education programme dealing with anxiety levels, and knowledge and practice of measures to prevent transmission of SARS among a group of older adults with low SES. Pretest/posttest design. Subjects were recruited from registered members of a government subsidized social service center in Hong Kong and living in low-cost housing estates. The eligibility criteria were: (1) aged 55 or above; (2) able to speak Cantonese; (3) no hearing impairment, and (4) reachable by telephone. Of the 295 eligible subjects, 122 older adults completed the whole study. The interviewers approached all eligible subjects by telephone during the period of 15-25 May 2003. After obtaining the participants' verbal consent, the interviewer collected baseline data by use of a questionnaire and implemented a health education programme. A follow-up telephone call was made a week later using the same questionnaire. The level of anxiety was lowered (t=3.28, p<0.001), and knowledge regarding the transmission routes of droplets (p<0.001) and urine and feces (p<0.01) were improved after the intervention. Although statistical significant difference was found in the practice of identified preventive measures before and after intervention, influence on behavioral changes needed further exploration. The telephone health education seemed to be effective in relieving anxiety and improving knowledge of the main transmission routes of SARS in this group, but not the practice of preventing SARS. Telephone contact appears

  19. Keynote presentation : SAR systems

    NARCIS (Netherlands)

    Halsema, D. van; Otten, M.P.G.; Maas, A.P.M.; Bolt, R.J.; Anitori, L.

    2011-01-01

    Synthetic Aperture Radar (SAR) systems are becoming increasingly important sensors in as well the military environment as in the civilian market. In this keynote presentation an overview will be given over more than 2 decades of SAR system∼ and SAR application development at TNO in the Netherlands.

  20. In vitro assembly of Ebola virus nucleocapsid-like complex expressed in E. coli

    Directory of Open Access Journals (Sweden)

    Ruchao Peng

    2016-09-01

    Full Text Available Abstract Ebola virus (EBOV harbors an RNA genome encapsidated by nucleoprotein (NP along with other viral proteins to form a nucleocapsid complex. Previous Cryo-eletron tomography and biochemical studies have shown the helical structure of EBOV nucleocapsid at nanometer resolution and the first 450 amino-acid of NP (NPΔ451–739 alone is capable of forming a helical nucleocapsid-like complex (NLC. However, the structural basis for NP-NP interaction and the dynamic procedure of the nucleocapsid assembly is yet poorly understood. In this work, we, by using an E. coli expression system, captured a series of images of NPΔ451–739 conformers at different stages of NLC assembly by negative-stain electron microscopy, which allowed us to picture the dynamic procedure of EBOV nucleocapsid assembly. Along with further biochemical studies, we showed the assembly of NLC is salt-sensitive, and also established an indispensible role of RNA in this process. We propose the diverse modes of NLC elongation might be the key determinants shaping the plasticity of EBOV virions. Our findings provide a new model for characterizing the self-oligomerization of viral nucleoproteins and studying the dynamic assembly process of viral nucleocapsid in vitro.

  1. In-Situ Measurement of Soil Permittivity at Various Depths for the Calibration and Validation of Low-Frequency SAR Soil Moisture Models by Using GPR

    Directory of Open Access Journals (Sweden)

    Christian N. Koyama

    2017-06-01

    Full Text Available At radar frequencies below 2 GHz, the mismatch between the 5 to 15 cm sensing depth of classical time domain reflectometry (TDR probe soil moisture measurements and the radar penetration depth can easily lead to unreliable in situ data. Accurate quantitative measurements of soil water contents at various depths by classical methods are cumbersome and usually highly invasive. We propose an improved method for the estimation of vertical soil moisture profiles from multi-offset ground penetrating radar (GPR data. A semi-automated data acquisition technique allows for very fast and robust measurements in the field. Advanced common mid-point (CMP processing is applied to obtain quantitative estimates of the permittivity and depth of the reflecting soil layers. The method is validated against TDR measurements using data acquired in different environments. Depth and soil moisture contents of the reflecting layers were estimated with root mean square errors (RMSE on the order of 5 cm and 1.9 Vol.-%, respectively. Application of the proposed technique for the validation of synthetic aperture radar (SAR soil moisture estimates is demonstrated based on a case study using airborne L-band data and ground-based P-band data. For the L-band case we found good agreement between the near-surface GPR estimates and extended integral equation model (I2EM based SAR retrievals, comparable to those obtained by TDR. At the P-band, the GPR based method significantly outperformed the TDR method when using soil moisture estimates at depths below 30 cm.

  2. A Polyamide Inhibits Replication of Vesicular Stomatitis Virus by Targeting RNA in the Nucleocapsid

    Energy Technology Data Exchange (ETDEWEB)

    Gumpper, Ryan H.; Li, Weike; Castañeda, Carlos H.; Scuderi, M. José; Bashkin, James K.; Luo, Ming; Dutch, Rebecca Ellis

    2018-02-07

    Polyamides have been shown to bind double-stranded DNA by complementing the curvature of the minor groove and forming various hydrogen bonds with DNA. Several polyamide molecules have been found to have potent antiviral activities against papillomavirus, a double-stranded DNA virus. By analogy, we reason that polyamides may also interact with the structured RNA bound in the nucleocapsid of a negative-strand RNA virus. Vesicular stomatitis virus (VSV) was selected as a prototype virus to test this possibility since its genomic RNA encapsidated in the nucleocapsid forms a structure resembling one strand of an A-form RNA duplex. One polyamide molecule, UMSL1011, was found to inhibit infection of VSV. To confirm that the polyamide targeted the nucleocapsid, a nucleocapsid-like particle (NLP) was incubated with UMSL1011. The encapsidated RNA in the polyamide-treated NLP was protected from thermo-release and digestion by RNase A. UMSL1011 also inhibits viral RNA synthesis in the intracellular activity assay for the viral RNA-dependent RNA polymerase. The crystal structure revealed that UMSL1011 binds the structured RNA in the nucleocapsid. The conclusion of our studies is that the RNA in the nucleocapsid is a viable antiviral target of polyamides. Since the RNA structure in the nucleocapsid is similar in all negative-strand RNA viruses, polyamides may be optimized to target the specific RNA genome of a negative-strand RNA virus, such as respiratory syncytial virus and Ebola virus.

    IMPORTANCENegative-strand RNA viruses (NSVs) include several life-threatening pathogens, such as rabies virus, respiratory syncytial virus, and Ebola virus. There are no effective antiviral drugs against these viruses. Polyamides offer an exceptional opportunity because they may be optimized to target each NSV. Our studies on vesicular stomatitis virus, an NSV, demonstrated that a polyamide molecule could specifically target the viral RNA in the nucleocapsid and inhibit

  3. Estimating Elevation Angles From SAR Crosstalk

    Science.gov (United States)

    Freeman, Anthony

    1994-01-01

    Scheme for processing polarimetric synthetic-aperture-radar (SAR) image data yields estimates of elevation angles along radar beam to target resolution cells. By use of estimated elevation angles, measured distances along radar beam to targets (slant ranges), and measured altitude of aircraft carrying SAR equipment, one can estimate height of target terrain in each resolution cell. Monopulselike scheme yields low-resolution topographical data.

  4. Mapping of a Hydrological Ice Sheet Drainage Basin on the West Greenland Ice Sheet Margin from ERS-1/2 SAR Interferometry, Ice-Radar Measurement, and Modelling

    DEFF Research Database (Denmark)

    Ahlstrøm, Andreas P.; Bøggild, C.E.; Stenseng, L.

    2002-01-01

    importance of the potential of the ice overburden pressure compared to the bedrock topography. The meltwater run-off for the basin delineations was modelled with an energy-balance model calibrated with observed ice-sheet ablation and compared to a 25 year time series of measured basin run-off. The standard......The hydrological ice-sheet basin draining into the Tasersiaq lake, West Greenland (66°13'N, 50°30'W), was delineated, First using standard digital elevation models (DEMs) for ice-sheet surface and bedrock, and subsequently using a new high-resolution dataset, with a surface DEM derived from repeat......-track interferometric synthetic aperture radar (SAR) and a bedrock topography derived from an airborne 60 MHz ice-penetrating radar. The extent of the delineation was calculated from a water-pressure potential as a function of the ice-sheet surface and bedrock elevations and a hydraulic factor κ describing the relative...

  5. Severe acute respiratory syndrome (SARS)

    Science.gov (United States)

    SARS; Respiratory failure - SARS ... Complications may include: Respiratory failure Liver failure Heart failure ... 366. McIntosh K, Perlman S. Coronaviruses, including severe acute respiratory syndrome (SARS) and Middle East respiratory syndrome (MERS). ...

  6. Probing Mercaptobenzamides as HIV Inactivators via Nucleocapsid Protein 7.

    Science.gov (United States)

    Saha, Mrinmoy; Scerba, Michael T; Shank, Nathaniel I; Hartman, Tracy L; Buchholz, Caitlin A; Buckheit, Robert W; Durell, Stewart R; Appella, Daniel H

    2017-05-22

    Human immunodeficiency virus type 1 (HIV-1) nucleocapsid protein 7 (NCp7), a zinc finger protein, plays critical roles in viral replication and maturation and is an attractive target for drug development. However, the development of drug-like molecules that inhibit NCp7 has been a significant challenge. In this study, a series of novel 2-mercaptobenzamide prodrugs were investigated for anti-HIV activity in the context of NCp7 inactivation. The molecules were synthesized from the corresponding thiosalicylic acids, and they are all crystalline solids and stable at room temperature. Derivatives with a range of amide side chains and aromatic substituents were synthesized and screened for anti-HIV activity. Wide ranges of antiviral activity were observed, with IC 50 values ranging from 1 to 100 μm depending on subtle changes to the substituents on the aromatic ring and side chain. Results from these structure-activity relationships were fit to a probable mode of intracellular activation and interaction with NCp7 to explain variations in antiviral activity. Our strategy to make a series of mercaptobenzamide prodrugs represents a general new direction to make libraries that can be screened for anti-HIV activity. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

  7. Low-SAR metamaterial-inspired printed monopole antenna

    Science.gov (United States)

    Hossain, M. I.; Faruque, M. R. I.; Islam, M. T.; Ali, M. T.

    2017-01-01

    In this paper, a low-SAR metamaterial-embedded planar monopole antenna is introduced for a wireless communication system. A printed monopole antenna is designed for modern mobile, which operates in GSM, UMTS, LTE, WLAN, and Bluetooth frequency bands. A metamaterial structure is designed to use in the mobile handset with a multi-band printed monopole antenna. The finite integration technique of the CST microwave studio is used in this study. The measurement of antenna performances is taken in an anechoic chamber, and the SAR values are measured using COMOSAR system. The results indicate that metamaterial structure leads to reduce SAR without affecting antenna performance significantly. According to the measured results, the metamaterial attachment leads to reduce 87.7% peak SAR, 68.2% 1-g SAR, and 46.78% 10-g SAR compared to antenna without metamaterial.

  8. Measurement of long-term land subsidence by combination of InSAR and time series analysis - Application study to Kanto Plains of Japan -

    Science.gov (United States)

    Deguchi, T.; Rokugawa, S.; Matsushima, J.

    2009-04-01

    InSAR is an application technique of synthetic aperture radars and is now drawing attention as a methodology capable of measuring subtle surface deformation over a wide area with a high spatial resolution. In this study, the authors applied the method of measuring long-term land subsidence by combining InSAR and time series analysis to Kanto Plains of Japan using 28 images of ENVISAT/ASAR data. In this measuring method, the value of land deformation is set as an unknown parameter and the optimal solution to the land deformation amount is derived by applying a smoothness-constrained inversion algorithm. The vicinity of the Kanto Plain started to subside in the 1910s, and became exposed to extreme land subsidence supposedly in accordance with the reconstruction efforts after the Second World War and the economic development activities. The main causes of the land subsidence include the intake of underground water for the use in industries, agriculture, waterworks, and other fields. In the Kujukuri area, the exploitation of soluble natural gas also counts. The Ministry of Environment reported in its documents created in fiscal 2006 that a total of 214 km2 in Tokyo and the six prefectures around the Plain had undergone a subsidence of 1 cm or more per a year. As a result of long-term land subsidence over approximately five and a half years from 13th January, 2003, to 30th June, 2008, unambiguous land deformation was detected in six areas: (i) Haneda Airport, (ii) Urayasu City, (iii) Kasukabe-Koshigaya, (iv) Southern Kanagawa, (v) Toride-Ryugasaki, and (vi) Kujukuri in Chiba Prefecture. In particular, the results for the Kujukuri area were compared with the leveling data taken around the same area to verify the measuring accuracy. The comparative study revealed that the regression formula between the results obtained by time series analysis and those by the leveling can be expressed as a straight line with a gradient of approximately 1, though including a bias of about

  9. Transport of Ebolavirus Nucleocapsids Is Dependent on Actin Polymerization: Live-Cell Imaging Analysis of Ebolavirus-Infected Cells.

    Science.gov (United States)

    Schudt, Gordian; Dolnik, Olga; Kolesnikova, Larissa; Biedenkopf, Nadine; Herwig, Astrid; Becker, Stephan

    2015-10-01

    Transport of ebolavirus (EBOV) nucleocapsids from perinuclear viral inclusions, where they are formed, to the site of budding at the plasma membrane represents an obligatory step of virus assembly. Until now, no live-cell studies on EBOV nucleocapsid transport have been performed, and participation of host cellular factors in this process, as well as the trajectories and speed of nucleocapsid transport, remain unknown. Live-cell imaging of EBOV-infected cells treated with different inhibitors of cellular cytoskeleton was used for the identification of cellular proteins involved in the nucleocapsid transport. EBOV nucleocapsids were visualized by expression of green fluorescent protein (GFP)-labeled nucleocapsid viral protein 30 (VP30) in EBOV-infected cells. Incorporation of the fusion protein VP30-GFP into EBOV nucleocapsids was confirmed by Western blot and indirect immunofluorescence analyses. Importantly, VP30-GFP fluorescence was readily detectable in the densely packed nucleocapsids inside perinuclear viral inclusions and in the dispersed rod-like nucleocapsids located outside of viral inclusions. Live-cell imaging of EBOV-infected cells revealed exit of single nucleocapsids from the viral inclusions and their intricate transport within the cytoplasm before budding at the plasma membrane. Nucleocapsid transport was arrested upon depolymerization of actin filaments (F-actin) and inhibition of the actin-nucleating Arp2/3 complex, and it was not altered upon depolymerization of microtubules or inhibition of N-WASP. Actin comet tails were often detected at the rear end of nucleocapsids. Marginally located nucleocapsids entered filopodia, moved inside, and budded from the tip of these thin cellular protrusions. Live-cell imaging of EBOV-infected cells revealed actin-dependent long-distance transport of EBOV nucleocapsids before budding at the cell surface. These findings provide useful insights into EBOV assembly and have potential application in the development

  10. Ground Deformation and Sources geometry of the 2016 Central Italy Earthquake Sequence Investigated through Analytical and Numerical Modeling of DInSAR Measurements and Structural-Geological Data

    Science.gov (United States)

    Solaro, G.; Bonano, M.; Boncio, P.; Brozzetti, F.; Castaldo, R.; Casu, F.; Cirillo, D.; Cheloni, D.; De Luca, C.; De Nardis, R.; De Novellis, V.; Ferrarini, F.; Lanari, R.; Lavecchia, G.; Manunta, M.; Manzo, M.; Pepe, A.; Pepe, S.; Tizzani, P.; Zinno, I.

    2017-12-01

    The 2016 Central Italy seismic sequence started on 24th August with a MW 6.1 event, where the intra-Apennine WSW-dipping Vettore-Gorzano extensional fault system released a destructive earthquake, causing 300 casualties and extensive damage to the town of Amatrice and surroundings. We generated several interferograms by using ALOS and Sentinel 1-A and B constellation data acquired on both ascending and descending orbits to show that most displacement is characterized by two main subsiding lobes of about 20 cm on the fault hanging-wall. By inverting the generated interferograms, following the Okada analytical approach, the modelling results account for two sources related to main shock and more energetic aftershock. Through Finite Element numerical modelling that jointly exploits DInSAR deformation measurements and structural-geological data, we reconstruct the 3D source of the Amatrice 2016 normal fault earthquake which well fit the main shock. The inversion shows that the co-seismic displacement area was partitioned on two distinct en echelon fault planes, which at the main event hypocentral depth (8 km) merge in one single WSW-dipping surface. Slip peaks were higher along the southern half of the Vettore fault, lower along the northern half of Gorzano fault and null in the relay zone between the two faults; field evidence of co-seismic surface rupture are coherent with the reconstructed scenario. The following seismic sequence was characterized by numerous aftershocks located southeast and northwest of the epicenter which decreased in frequency and magnitude until the end of October, when a MW 5.9 event occurred on 26th October about 25 km to the NW of the previous mainshock. Then, on 30th October, a third large event of magnitude MW 6.5 nucleated below the town of Norcia, striking the area between the two preceding events and filling the gap between the previous ruptures. Also in this case, we exploit a large dataset of DInSAR and GPS measurements to investigate

  11. Monitoring Building Deformation with InSAR: Experiments and Validation

    Science.gov (United States)

    Yang, Kui; Yan, Li; Huang, Guoman; Chen, Chu; Wu, Zhengpeng

    2016-01-01

    Synthetic Aperture Radar Interferometry (InSAR) techniques are increasingly applied for monitoring land subsidence. The advantages of InSAR include high accuracy and the ability to cover large areas; nevertheless, research validating the use of InSAR on building deformation is limited. In this paper, we test the monitoring capability of the InSAR in experiments using two landmark buildings; the Bohai Building and the China Theater, located in Tianjin, China. They were selected as real examples to compare InSAR and leveling approaches for building deformation. Ten TerraSAR-X images spanning half a year were used in Permanent Scatterer InSAR processing. These extracted InSAR results were processed considering the diversity in both direction and spatial distribution, and were compared with true leveling values in both Ordinary Least Squares (OLS) regression and measurement of error analyses. The detailed experimental results for the Bohai Building and the China Theater showed a high correlation between InSAR results and the leveling values. At the same time, the two Root Mean Square Error (RMSE) indexes had values of approximately 1 mm. These analyses show that a millimeter level of accuracy can be achieved by means of InSAR technique when measuring building deformation. We discuss the differences in accuracy between OLS regression and measurement of error analyses, and compare the accuracy index of leveling in order to propose InSAR accuracy levels appropriate for monitoring buildings deformation. After assessing the advantages and limitations of InSAR techniques in monitoring buildings, further applications are evaluated. PMID:27999403

  12. Monitoring Building Deformation with InSAR: Experiments and Validation

    Directory of Open Access Journals (Sweden)

    Kui Yang

    2016-12-01

    Full Text Available Synthetic Aperture Radar Interferometry (InSAR techniques are increasingly applied for monitoring land subsidence. The advantages of InSAR include high accuracy and the ability to cover large areas; nevertheless, research validating the use of InSAR on building deformation is limited. In this paper, we test the monitoring capability of the InSAR in experiments using two landmark buildings; the Bohai Building and the China Theater, located in Tianjin, China. They were selected as real examples to compare InSAR and leveling approaches for building deformation. Ten TerraSAR-X images spanning half a year were used in Permanent Scatterer InSAR processing. These extracted InSAR results were processed considering the diversity in both direction and spatial distribution, and were compared with true leveling values in both Ordinary Least Squares (OLS regression and measurement of error analyses. The detailed experimental results for the Bohai Building and the China Theater showed a high correlation between InSAR results and the leveling values. At the same time, the two Root Mean Square Error (RMSE indexes had values of approximately 1 mm. These analyses show that a millimeter level of accuracy can be achieved by means of InSAR technique when measuring building deformation. We discuss the differences in accuracy between OLS regression and measurement of error analyses, and compare the accuracy index of leveling in order to propose InSAR accuracy levels appropriate for monitoring buildings deformation. After assessing the advantages and limitations of InSAR techniques in monitoring buildings, further applications are evaluated.

  13. Simultaneous measurements from the Millstone Hill radar and the Active satellite during the SAID/SAR arc event of the March 1990 CEDAR storm

    Directory of Open Access Journals (Sweden)

    M. Förster

    Full Text Available During a nearby passage of the Active satellite above the Millstone Hill radar on 21 March 1990 at local sunset, the satellite and the radar performed simultaneous measurements of upper ionospheric parameters in nearly the same spatial volume. For this purpose the radar carried out a special azimuth-elevation scan to track the satellite. Direct comparisons of radar data and in situ satellite measurements have been carried out quite rarely. In this case, the coincidence of co-ordinated measurements and active ionospheric-magnetospheric processes during an extended storm recovery phase presents a unique occasion resulting in a very valuable data set. The measurements show generally good agreement both during quiet prestorm and storm conditions and the combination of radar and satellite observations gives a more comprehensive picture of the physical processes involved. We find a close relationship between the rapid westward ion drift peak at subauroral latitudes (SAID event and the occurrence of a stable auroral red (SAR arc observed after sunset by an all-sky imager and reported in an earlier study of this event. The SAID electric field is caused by the penetration of energetic ions with energies between about 1 keV and 100 keV into the outer plasmasphere to a latitude equatorward of the extent of the plasmasheet electrons. Charge separation results in the observed polarisation field and the SAID. Unusually high molecular ion densities measured by the satellite at altitudes of 700-870 km at subauroral and auroral latitudes point on strong upward-directed ion acceleration processes and an intense neutral gas upwelling. These structures are collocated with a narrow trough in electron density and an electron temperature peak as observed simultaneously by the radar and the satellite probes.

    Key words. Ionosphere (ionosphere-magnetosphere interactions; plasma temperature and density; Magnetospheric physics (plasmasphere.

  14. 2D Modelling of the Gorkha earthquake through the joint exploitation of Sentinel 1-A DInSAR measurements and geological, structural and seismological information

    Science.gov (United States)

    De Novellis, Vincenzo; Castaldo, Raffaele; Solaro, Giuseppe; De Luca, Claudio; Pepe, Susi; Bonano, Manuela; Casu, Francesco; Zinno, Ivana; Manunta, Michele; Lanari, Riccardo; Tizzani, Pietro

    2016-04-01

    A Mw 7.8 earthquake struck Nepal on 25 April 2015 at 06:11:26 UTC, killing more than 9,000 people, injuring more than 23,000 and producing extensive damages. The main seismic event, known as the Gorkha earthquake, had its epicenter localized at ~82 km NW of the Kathmandu city and the hypocenter at a depth of approximately 15 km. After the main shock event, about 100 aftershocks occurred during the following months, propagating toward the south-east direction; in particular, the most energetic shocks were the Mw 6.7 and Mw 7.3 occurred on 26 April and 12 May, respectively. In this study, we model the causative fault of the earthquake by jointly exploiting surface deformation retrieved by the DInSAR measurements collected through the Sentinel 1-A (S1A) space-borne sensor and the available geological, structural and seismological information. We first exploit the analytical solution performing a back-analysis of the ground deformation detected by the first co-seismic S1A interferogram, computed by exploiting the 17/04/2015 and 29/04/2015 SAR acquisitions and encompassing the main earthquake and some aftershocks, to search for the location and geometry of the fault plane. Starting from these findings and by benefiting from the available geological, structural and seismological data, we carry out a Finite Element (FE)-based 2D modelling of the causative fault, in order to evaluate the impact of the geological structures activated during the seismic event on the distribution of the ground deformation field. The obtained results show that the causative fault has a rather complex compressive structure, dipping northward, formed by segments with different dip angles: 6° the deep segment and 60° the shallower one. Therefore, although the hypocenters of the main shock and most of the more energetic aftershocks are located along the deeper plane, corresponding to a segment of the Main Himalayan Thrust (MHT), the FE solution also indicates the contribution of the shallower

  15. Evaluation of the Wishart test statistics for polarimetric SAR data

    DEFF Research Database (Denmark)

    Skriver, Henning; Nielsen, Allan Aasbjerg; Conradsen, Knut

    2003-01-01

    A test statistic for equality of two covariance matrices following the complex Wishart distribution has previously been used in new algorithms for change detection, edge detection and segmentation in polarimetric SAR images. Previously, the results for change detection and edge detection have been...... quantitatively evaluated. This paper deals with the evaluation of segmentation. A segmentation performance measure originally developed for single-channel SAR images has been extended to polarimetric SAR images, and used to evaluate segmentation for a merge-using-moment algorithm for polarimetric SAR data....

  16. Liquid-phase and solid-phase radioimmunoassay with herpes simplex virus type 1 nucleocapsids

    International Nuclear Information System (INIS)

    Bystricka, M.; Rajcani, J.; Libikova, H.; Sabo, A.; Foeldes, O.; Sadlon, J.

    1985-01-01

    Liquid-phase radioimmunoassay and solid-phase radioimmunoassay are described using 125 I-labelled or immobilized nucleocapsids (NC) of herpes simplex virus (HSV) type1. These techniques appeared sensitive and specific for quantitation of HSV-NC antigens and corresponding antibodies. (author)

  17. Observations of Bathymetry-Induced Ocean Roughness Modulation in In-situ Surface Slope Measurements and Coincident Airborne SAR Images

    NARCIS (Netherlands)

    Gommenginger, C.P.; Robinson, I.S.; Willoughby, J.; Greidanus, H.S.F.; Taylor, V.

    1999-01-01

    Empirical results from a field experiment in the southern North Sea have demonstrated the possibility to detect bathymetry-induced sea surface roughness modulation in the coastal zone using high frequency in-situ slope measurements provided by the Towed Laser Slopemeter. A strong correlation between

  18. Calibration of SAR probes in waveguide at 900 MHz

    International Nuclear Information System (INIS)

    Jokela, K.; Puranen, L.; Hyysalo, P.

    1998-01-01

    The radiation safety tests for hand-held mobile phones require precise calibration of the small electric field probes used for the measurement of SAR in phantoms simulating the human body. In this study a calibration based on a rectangular waveguide was developed for SAR calibrations at 900 MHz

  19. Landslide kinematics and their potential controls from hourly to decadal timescales: Insights from integrating ground-based InSAR measurements with structural maps and long-term monitoring data

    Science.gov (United States)

    Schulz, William H.; Coe, Jeffrey A.; Ricci, Pier P.; Smoczyk, Gregory M.; Shurtleff, Brett L.; Panosky, Joanna

    2017-05-01

    Knowledge of kinematics is rudimentary for understanding landslide controls and is increasingly valuable with greater spatiotemporal coverage. However, characterizing landslide-wide kinematics is rare, especially at broadly ranging timescales. We used highly detailed kinematic data obtained using photogrammetry and field mapping during the 1980s and 1990s and our 4.3-day ground-based InSAR survey during 2010 to study kinematics of the large, persistently moving Slumgullion landslide. The landslide was segregated into 11 kinematic elements using the 1980s-1990s data and the InSAR survey revealed most of these elements within a few hours. Averages of InSAR-derived displacement point measures within each element agreed well with higher quality in situ observations; averaging was deemed necessary because adverse look angles for the radar coupled with tree cover on the landslide introduced error in the InSAR results. We found that the landslide moved during 2010 at about half its 1985-1990 speed, but slowing was most pronounced at the landslide head. Gradually decreased precipitation and increased temperature between the periods likely resulted in lower groundwater levels and consequent slowing of the landslide. We used GPS survey results and limit-equilibrium modeling to analyze changing stability of the landslide head from observed thinning and found that its stability increased between the two periods, which would result in its slowing, and the consequent slowing of the entire landslide. Additionally, InSAR results suggested movement of kinematic element boundaries in the head region and our field mapping verified that they moved and changed character, likely because of the long-term increasing head stability. On an hourly basis, InSAR results were near error bounds but suggested landslide acceleration in response to seemingly negligible rainfall. Pore-pressure diffusion modeling suggested that rainfall infiltration affected frictional strength only to shallow depths

  20. MULTI-TEMPORAL SAR INTERFEROMETRY FOR LANDSLIDE MONITORING

    Directory of Open Access Journals (Sweden)

    R. Dwivedi

    2016-06-01

    Full Text Available In the past few years, SAR Interferometry specially InSAR and D-InSAR were extensively used for deformation monitoring related applications. Due to temporal and spatial decorrelation in dense vegetated areas, effectiveness of InSAR and D-InSAR observations were always under scrutiny. Multi-temporal InSAR methods are developed in recent times to retrieve the deformation signal from pixels with different scattering characteristics. Presently, two classes of multi-temporal InSAR algorithms are available- Persistent Scatterer (PS and Small Baseline (SB methods. This paper discusses the Stanford Method for Persistent Scatterer (StaMPS based PS-InSAR and the Small Baselines Subset (SBAS techniques to estimate the surface deformation in Tehri dam reservoir region in Uttarkhand, India. Both PS-InSAR and SBAS approaches used sixteen ENVISAT ASAR C-Band images for generating single master and multiple master interferograms stack respectively and their StaMPS processing resulted in time series 1D-Line of Sight (LOS mean velocity maps which are indicative of deformation in terms of movement towards and away from the satellites. From 1D LOS velocity maps, localization of landslide is evident along the reservoir rim area which was also investigated in the previous studies. Both PS-InSAR and SBAS effectively extract measurement pixels in the study region, and the general results provided by both approaches show a similar deformation pattern along the Tehri reservoir region. Further, we conclude that StaMPS based PS-InSAR method performs better in terms of extracting more number of measurement pixels and in the estimation of mean Line of Sight (LOS velocity as compared to SBAS method. It is also proposed to take up a few major landslides area in Uttarakhand for slope stability assessment.

  1. I had a dream… Continuous InSAR measurement and transparent earth, the beauty of analogue modeling to assess direct model uncertainties

    Science.gov (United States)

    Taisne, B.; Pansino, S.; Manta, F.; Tay Wen Jing, C.

    2017-12-01

    Have you ever dreamed about continuous, high resolution InSAR data? Have you ever dreamed about a transparent earth allowing you to see what is actually going on under a volcano? Well, you likely dreamed about an analogue facility that allows you to scale down the natural system to fit into a room, with a controlled environment and complex visualisation system. Analogue modeling has been widely used to understand magmatic processes and thanks to a transparent analogue for the elastic Earth's crust, we can see, as it evolves with time, the migration of a dyke, the volume change of a chamber or the rise of a bubble in a conduit. All those phenomena are modeled theoretically or numerically, with their own simplifications. Therefore, how well are we really constraining the physical parameters describing the evolution of a dyke or a chamber? Getting access to those parameters, in real time and with high level of confidence is of paramount importance while dealing with unrest at volcanoes. The aim of this research is to estimate the uncertainties of the widely used Okada and Mogi models. To do so, we design a set of analogue experiments allowing us to explore different elastic properties of the medium, the characteristic of the fluid injected into the medium as well as the depth, size and volume change of a reservoir. The associated surface deformation is extracted using an array of synchronised cameras and using digital image correlation and structure from motion for horizontal and vertical deformation respectively. The surface deformation are then inverted to retrieve the controlling parameters (e.g. location and volume change of a chamber, or orientation, position, length, breadth and opening of a dyke). By comparing those results with the known parameters, that we can see and measure independently, we estimate the uncertainties of the models themself, and the associated level of confidence for each of the inverted parameters.

  2. The 21 August 2017 Ischia (Italy) Earthquake Source Model Inferred From Seismological, GPS, and DInSAR Measurements

    Science.gov (United States)

    De Novellis, V.; Carlino, S.; Castaldo, R.; Tramelli, A.; De Luca, C.; Pino, N. A.; Pepe, S.; Convertito, V.; Zinno, I.; De Martino, P.; Bonano, M.; Giudicepietro, F.; Casu, F.; Macedonio, G.; Manunta, M.; Cardaci, C.; Manzo, M.; Di Bucci, D.; Solaro, G.; Zeni, G.; Lanari, R.; Bianco, F.; Tizzani, P.

    2018-03-01

    The causative source of the first damaging earthquake instrumentally recorded in the Island of Ischia, occurred on 21 August 2017, has been studied through a multiparametric geophysical approach. In order to investigate the source geometry and kinematics we exploit seismological, Global Positioning System, and Sentinel-1 and COSMO-SkyMed differential interferometric synthetic aperture radar coseismic measurements. Our results indicate that the retrieved solutions from the geodetic data modeling and the seismological data are plausible; in particular, the best fit solution consists of an E-W striking, south dipping normal fault, with its center located at a depth of 800 m. Moreover, the retrieved causative fault is consistent with the rheological stratification of the crust in this zone. This study allows us to improve the knowledge of the volcano-tectonic processes occurring on the Island, which is crucial for a better assessment of the seismic risk in the area.

  3. Validation and operational measurements with SUSIE – A sar ice motion processing chain developed within promice (Programme for monitoring of Greenland ice-sheet)

    DEFF Research Database (Denmark)

    Merryman Boncori, John Peter; Dall, Jørgen; Ahlstrøm, A. P.

    2010-01-01

    This paper describes the validation of an ice-motion processing chain developed for the PROMICE project – a long-term program funded by the Danish ministry of Climate and Energy to monitor the mass budget of the Greenland ice-sheet. The processor, named SUSIE, (Scripts and Utilities for SAR Ice...

  4. Crop Classification by Polarimetric SAR

    DEFF Research Database (Denmark)

    Skriver, Henning; Svendsen, Morten Thougaard; Nielsen, Flemming

    1999-01-01

    Polarimetric SAR-data of agricultural fields have been acquired by the Danish polarimetric L- and C-band SAR (EMISAR) during a number of missions at the Danish agricultural test site Foulum during 1995. The data are used to study the classification potential of polarimetric SAR data using...

  5. Mapping groundwater level and aquifer storage variations from InSAR measurements in the Madrid aquifer, Central Spain

    Science.gov (United States)

    Béjar-Pizarro, Marta; Ezquerro, Pablo; Herrera, Gerardo; Tomás, Roberto; Guardiola-Albert, Carolina; Ruiz Hernández, José M.; Fernández Merodo, José A.; Marchamalo, Miguel; Martínez, Rubén

    2017-04-01

    Groundwater resources are under stress in many regions of the world and the future water supply for many populations, particularly in the driest places on Earth, is threatened. Future climatic conditions and population growth are expected to intensify the problem. Understanding the factors that control groundwater storage variation is crucial to mitigate its adverse consequences. In this work, we apply satellite-based measurements of ground deformation over the Tertiary detritic aquifer of Madrid (TDAM), Central Spain, to infer the spatio-temporal evolution of water levels and estimate groundwater storage variations. Specifically, we use Persistent Scatterer Interferometry (PSI) data during the period 1992-2010 and piezometric time series on 19 well sites covering the period 1997-2010 to build groundwater level maps and quantify groundwater storage variations. Our results reveal that groundwater storage loss occurred in two different periods, 1992-1999 and 2005-2010 and was mainly concentrated in a region of ∼200 km2. The presence of more compressible materials in that region combined with a long continuous water extraction can explain this volumetric deficit. This study illustrates how the combination of PSI and piezometric data can be used to detect small aquifers affected by groundwater storage loss helping to improve their sustainable management.

  6. Sentinel-3 SAR Altimetry Toolbox

    Science.gov (United States)

    Benveniste, Jerome; Lucas, Bruno; DInardo, Salvatore

    2015-04-01

    The prime objective of the SEOM (Scientific Exploitation of Operational Missions) element is to federate, support and expand the large international research community that the ERS, ENVISAT and the Envelope programmes have build up over the last 20 years for the future European operational Earth Observation missions, the Sentinels. Sentinel-3 builds directly on a proven heritage of ERS-2 and Envisat, and CryoSat-2, with a dual-frequency (Ku and C band) advanced Synthetic Aperture Radar Altimeter (SRAL) that provides measurements at a resolution of ~300m in SAR mode along track. Sentinel-3 will provide exact measurements of sea-surface height along with accurate topography measurements over sea ice, ice sheets, rivers and lakes. The first of the two Sentinels is expected to be launched in early 2015. The current universal altimetry toolbox is BRAT (Basic Radar Altimetry Toolbox) which can read all previous and current altimetry mission's data, but it does not have the capabilities to read the upcoming Sentinel-3 L1 and L2 products. ESA will endeavour to develop and supply this capability to support the users of the future Sentinel-3 SAR Altimetry Mission. BRAT is a collection of tools and tutorial documents designed to facilitate the processing of radar altimetry data. This project started in 2005 from the joint efforts of ESA (European Space Agency) and CNES (Centre National d'Etudes Spatiales), and it is freely available at http://earth.esa.int/brat. The tools enable users to interact with the most common altimetry data formats, the BratGUI is the front-end for the powerful command line tools that are part of the BRAT suite. BRAT can also be used in conjunction with Matlab/IDL (via reading routines) or in C/C++/Fortran via a programming API, allowing the user to obtain desired data, bypassing the data-formatting hassle. BRAT can be used simply to visualise data quickly, or to translate the data into other formats such as netCDF, ASCII text files, KML (Google Earth

  7. HSV-1 nucleocapsid egress mediated by UL31 in association with UL34 is impeded by cellular transmembrane protein 140

    Energy Technology Data Exchange (ETDEWEB)

    Guan, Ying [Department of Viral Immunology, Institute of Medical Biology, Chinese Academy of Medicine Science, Peking Union Medical College, Kunming 650118 (China); Yunnan Academy of Tobacco Science, Kunming, Yunnan 650106 (China); Guo, Lei; Yang, Erxia; Liao, Yun; Liu, Longding; Che, Yanchun; Zhang, Ying; Wang, Lichun; Wang, Jingjing [Department of Viral Immunology, Institute of Medical Biology, Chinese Academy of Medicine Science, Peking Union Medical College, Kunming 650118 (China); Li, Qihan, E-mail: imbcams.lq@gmail.com [Department of Viral Immunology, Institute of Medical Biology, Chinese Academy of Medicine Science, Peking Union Medical College, Kunming 650118 (China)

    2014-09-15

    During HSV-1 infection, the viral UL31 protein forms a complex with the UL34 protein at the cellular nuclear membrane, where both proteins play important roles in the envelopment of viral nucleocapsids and their egress into the cytoplasm. To characterize the mechanism of HSV-1 nucleocapsid egress, we screened host proteins to identify proteins that interacted with UL31 via yeast two-hybrid analysis. Transmembrane protein 140 (TMEM140), was identified and confirmed to bind to and co-localize with UL31 during viral infection. Further studies indicated that TMEM140 inhibits HSV-1 proliferation through selectively blocking viral nucleocapsid egress during the viral assembly process. The blockage function of TMEM140 is mediated by impeding the formation of the UL31–UL34 complex due to competitive binding to UL31. Collectively, these data suggest the essentiality of the UL31–UL34 interaction in the viral nucleocapsid egress process and provide a new anti-HSV-1 strategy in viral assembly process of nucleocapsid egress. - Highlights: • Cellular TMEM140 protein interacts with HSV-1 UL31 protein during viral infection. • Increasing expression of TMEM140 leads to inhibition of HSV-1 proliferation. • Increasing expression of TMEM140 blocks HSV-1 nucleocapsid egress process. • Binding to UL31 of TMEM140 impedes formation of HSV-1 UL31–UL34 complex.

  8. Bats and SARS

    Centers for Disease Control (CDC) Podcasts

    Bats are a natural reservoir for emerging viruses, among them henipaviruses and rabies virus variants. Dr. Nina Marano, Chief, Geographic Medicine and Health Promotion Branch, Division of Global Migration and Quarantine, CDC, explains connection between horseshoe bats and SARS coronavirus transmission.

  9. Bats and SARS

    Centers for Disease Control (CDC) Podcasts

    2006-11-08

    Bats are a natural reservoir for emerging viruses, among them henipaviruses and rabies virus variants. Dr. Nina Marano, Chief, Geographic Medicine and Health Promotion Branch, Division of Global Migration and Quarantine, CDC, explains connection between horseshoe bats and SARS coronavirus transmission.  Created: 11/8/2006 by Emerging Infectious Diseases.   Date Released: 11/17/2006.

  10. Data Analytics for SAR

    Energy Technology Data Exchange (ETDEWEB)

    Murphy, David Patrick [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Calef, Matthew Thomas [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2017-10-02

    We assess the ability of variants of anomalous change detection (ACD) to identify human activity associated with large outdoor music festivals as they are seen from synthetic aperture radar (SAR) imagery collected by the Sentinel-1 satellite constellation. We found that, with appropriate feature vectors, ACD using random-forest machine learning was most effective at identifying changes associated with the human activity.

  11. Bistatic SAR: Proof of Concept.

    Energy Technology Data Exchange (ETDEWEB)

    Yocky, David A.; Doren, Neall E.; Bacon, Terry A.; Wahl, Daniel E.; Eichel, Paul H.; Jakowatz, Charles V,; Delaplain, Gilbert G.; Dubbert, Dale F.; Tise, Bertice L.; White, Kyle R.

    2014-10-01

    Typical synthetic aperture RADAR (SAR) imaging employs a co-located RADAR transmitter and receiver. Bistatic SAR imaging separates the transmitter and receiver locations. A bistatic SAR configuration allows for the transmitter and receiver(s) to be in a variety of geometric alignments. Sandia National Laboratories (SNL) / New Mexico proposed the deployment of a ground-based RADAR receiver. This RADAR receiver was coupled with the capability of digitizing and recording the signal collected. SNL proposed the possibility of creating an image of targets the illuminating SAR observes. This document describes the developed hardware, software, bistatic SAR configuration, and its deployment to test the concept of a ground-based bistatic SAR. In the proof-of-concept experiments herein, the RADAR transmitter will be a commercial SAR satellite and the RADAR receiver will be deployed at ground level, observing and capturing RADAR ground/targets illuminated by the satellite system.

  12. Assessing ScanSAR Interferometry for Deformation Studies

    Science.gov (United States)

    Buckley, S. M.; Gudipati, K.

    2007-12-01

    There is a trend in civil satellite SAR mission design to implement an imaging strategy that incorporates both stripmap mode and ScanSAR imaging. This represents a compromise between high resolution data collection and a desire for greater spatial coverage and more frequent revisit times. However, mixed mode imaging can greatly reduce the number of stripmap images available for measuring subtle ground deformation. Although ScanSAR-ScanSAR and ScanSAR-stripmap repeat-pass interferometry have been demonstrated, these approaches are infrequently used for single interferogram formation and nonexistent for InSAR time series analysis. For future mission design, e.g., a dedicated US InSAR mission, the effect of various ScanSAR system parameter choices on InSAR time series analysis also remains unexplored. Our objective is to determine the utility of ScanSAR differential interferometry. We will demonstrate the use of ScanSAR interferograms for several previous deformation studies: localized and broad-scale urban land subsidence, tunneling, volcanic surface movements and several examples associated with the seismic cycle. We also investigate the effect of various ScanSAR burst synchronization levels on our ability to detect and make quality measurements of deformation. To avoid the issues associated with Envisat ScanSAR burst alignment and to exploit a decade of InSAR measurements, we simulate ScanSAR data by bursting (throwing away range lines of) ERS-1/2 data. All the burst mode datasets are processed using a Modified SPECAN algorithm. To investigate the effects of burst misalignment, a number of cases with varying degrees of burst overlap are considered. In particular, we look at phase decorrelation as a function of percentage of burst overlap. Coherence clearly reduces as the percentage of overlap decreases and we find a useful threshold of 40-70% burst overlap depending on the study site. In order to get a more generalized understanding for different surface conditions

  13. Rescue of Infectious Particles from Preassembled Alphavirus Nucleocapsid Cores▿†

    Science.gov (United States)

    Snyder, Jonathan E.; Azizgolshani, Odisse; Wu, Bingbing; He, Yingpei; Lee, Aih Cheun; Jose, Joyce; Suter, Daniel M.; Knobler, Charles M.; Gelbart, William M.; Kuhn, Richard J.

    2011-01-01

    Alphaviruses are small, spherical, enveloped, positive-sense, single-stranded, RNA viruses responsible for considerable human and animal disease. Using microinjection of preassembled cores as a tool, a system has been established to study the assembly and budding process of Sindbis virus, the type member of the alphaviruses. We demonstrate the release of infectious virus-like particles from cells expressing Sindbis virus envelope glycoproteins following microinjection of Sindbis virus nucleocapsids purified from the cytoplasm of infected cells. Furthermore, it is shown that nucleocapsids assembled in vitro mimic those isolated in the cytoplasm of infected cells with respect to their ability to be incorporated into enveloped virions following microinjection. This system allows for the study of the alphavirus budding process independent of an authentic infection and provides a platform to study viral and host requirements for budding. PMID:21471237

  14. Ebola virus VP24 interacts with NP to facilitate nucleocapsid assembly and genome packaging.

    Science.gov (United States)

    Banadyga, Logan; Hoenen, Thomas; Ambroggio, Xavier; Dunham, Eric; Groseth, Allison; Ebihara, Hideki

    2017-08-09

    Ebola virus causes devastating hemorrhagic fever outbreaks for which no approved therapeutic exists. The viral nucleocapsid, which is minimally composed of the proteins NP, VP35, and VP24, represents an attractive target for drug development; however, the molecular determinants that govern the interactions and functions of these three proteins are still unknown. Through a series of mutational analyses, in combination with biochemical and bioinformatics approaches, we identified a region on VP24 that was critical for its interaction with NP. Importantly, we demonstrated that the interaction between VP24 and NP was required for both nucleocapsid assembly and genome packaging. Not only does this study underscore the critical role that these proteins play in the viral replication cycle, but it also identifies a key interaction interface on VP24 that may serve as a novel target for antiviral therapeutic intervention.

  15. BM61 of Bombyx mori nucleopolyhedrovirus: its involvement in the egress of nucleocapsids from the nucleus.

    Science.gov (United States)

    Shen, Hongxing; Chen, Keping

    2012-04-05

    All lepidopteran baculovirus genomes sequenced encode a homolog of the Bombyx mori nucleopolyhedrovirus orf61 gene (Bm61). To determine the role of Bm61 in the baculoviral life cycle, we constructed a Bm61 knockout virus and characterized it in cells. We observed that the Bm61 deletion bacmid led to a defect in production of infectious budded virus (BV). Quantitative PCR analysis of BV in the media culturing the transfected cell indicated that BV was not produced due to Bm61 deletion. Electron microscope analysis showed that in the knockout of Bm61, nucleocapsids were not transported from the nucleus to the cytoplasm. From these results we concluded that BM61 is required in the BV pathway for the egress of nucleocapsids from the nucleus to the cytoplasm. Copyright © 2012 Federation of European Biochemical Societies. Published by Elsevier B.V. All rights reserved.

  16. Nucleocapsid-Independent Specific Viral RNA Packaging via Viral Envelope Protein and Viral RNA Signal

    OpenAIRE

    Narayanan, Krishna; Chen, Chun-Jen; Maeda, Junko; Makino, Shinji

    2003-01-01

    For any of the enveloped RNA viruses studied to date, recognition of a specific RNA packaging signal by the virus's nucleocapsid (N) protein is the first step described in the process of viral RNA packaging. In the murine coronavirus a selective interaction between the viral transmembrane envelope protein M and the viral ribonucleoprotein complex, composed of N protein and viral RNA containing a short cis-acting RNA element, the packaging signal, determines the selective RNA packaging into vi...

  17. Autographa californica multiple nucleopolyhedrovirus PK-1 is essential for nucleocapsid assembly

    Energy Technology Data Exchange (ETDEWEB)

    Liang, Changyong, E-mail: cyliang@yzu.edu.cn [College of Bioscience and Biotechnology, Yangzhou University, Yangzhou 225009 (China); Li, Min; Dai, Xuejuan; Zhao, Shuling; Hou, Yanling; Zhang, Yongli; Lan, Dandan [College of Bioscience and Biotechnology, Yangzhou University, Yangzhou 225009 (China); Wang, Yun; Chen, Xinwen [State Key Laboratory of Virology, Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071 (China)

    2013-09-01

    PK-1 (Ac10) is a baculovirus-encoded serine/threonine kinase and its function is unclear. Our results showed that a pk-1 knockout AcMNPV failed to produce infectious progeny, while the pk-1 repair virus could rescue this defect. qPCR analysis demonstrated that pk-1 deletion did not affect viral DNA replication. Analysis of the repaired recombinants with truncated pk-1 mutants demonstrated that the catalytic domain of protein kinases of PK-1 was essential to viral infectivity. Moreover, those PK-1 mutants that could rescue the infectious BV production defect exhibited kinase activity in vitro. Therefore, it is suggested that the kinase activity of PK-1 is essential in regulating viral propagation. Electron microscopy revealed that pk-1 deletion affected the formation of normal nucleocapsids. Masses of electron-lucent tubular structures were present in cell transfected with pk-1 knockout bacmid. Therefore, PK-1 appears to phosphorylate some viral or cellular proteins that are essential for DNA packaging to regulate nucleocapsid assembly. - Highlights: • A pk-1 knockout AcMNPV failed to produce infectious progeny. • The pk-1 deletion did not affect viral DNA replication. • The catalytic domain of protein kinases (PKc) of PK-1 was essential to viral infectivity. • The kinase activity of PK-1 is essential in regulating viral propagation. • PK-1 appears to phosphorylate some viral proteins that are essential for DNA packaging to regulate nucleocapsid assembly.

  18. PrPC has nucleic acid chaperoning properties similar to the nucleocapsid protein of HIV-1.

    Science.gov (United States)

    Derrington, Edmund; Gabus, Caroline; Leblanc, Pascal; Chnaidermann, Jonas; Grave, Linda; Dormont, Dominique; Swietnicki, Wieslaw; Morillas, Manuel; Marck, Daniel; Nandi, Pradip; Darlix, Jean-Luc

    2002-01-01

    The function of the cellular prion protein (PrPC) remains obscure. Studies suggest that PrPC functions in several processes including signal transduction and Cu2+ metabolism. PrPC has also been established to bind nucleic acids. Therefore we investigated the properties of PrPC as a putative nucleic acid chaperone. Surprisingly, PrPC possesses all the nucleic acid chaperoning properties previously specific to retroviral nucleocapsid proteins. PrPC appears to be a molecular mimic of NCP7, the nucleocapsid protein of HIV-1. Thus PrPC, like NCP7, chaperones the annealing of tRNA(Lys) to the HIV-1 primer binding site, the initial step of retrovirus replication. PrPC also chaperones the two DNA strand transfers required for production of a complete proviral DNA with LTRs. Concerning the functions of NCP7 during budding, PrPC also mimices NCP7 by dimerizing the HIV-1 genomic RNA. These data are unprecedented because, although many cellular proteins have been identified as nucleic acid chaperones, none have the properties of retroviral nucleocapsid proteins.

  19. Bistatic sAR data processing algorithms

    CERN Document Server

    Qiu, Xiaolan; Hu, Donghui

    2013-01-01

    Synthetic Aperture Radar (SAR) is critical for remote sensing. It works day and night, in good weather or bad. Bistatic SAR is a new kind of SAR system, where the transmitter and receiver are placed on two separate platforms. Bistatic SAR is one of the most important trends in SAR development, as the technology renders SAR more flexible and safer when used in military environments. Imaging is one of the most difficult and important aspects of bistatic SAR data processing. Although traditional SAR signal processing is fully developed, bistatic SAR has a more complex system structure, so sign

  20. Impact of the Regulators SigB, Rot, SarA and sarS on the Toxic Shock Tst Promoter and TSST-1 Expression in Staphylococcus aureus.

    Directory of Open Access Journals (Sweden)

    Diego O Andrey

    Full Text Available Staphylococcus aureus is an important pathogen manifesting virulence through diverse disease forms, ranging from acute skin infections to life-threatening bacteremia or systemic toxic shock syndromes. In the latter case, the prototypical superantigen is TSST-1 (Toxic Shock Syndrome Toxin 1, encoded by tst(H, and carried on a mobile genetic element that is not present in all S. aureus strains. Transcriptional regulation of tst is only partially understood. In this study, we dissected the role of sarA, sarS (sarH1, RNAIII, rot, and the alternative stress sigma factor sigB (σB. By examining tst promoter regulation predominantly in the context of its native sequence within the SaPI1 pathogenicity island of strain RN4282, we discovered that σB emerged as a particularly important tst regulator. We did not detect a consensus σB site within the tst promoter, and thus the effect of σB is likely indirect. We found that σB strongly repressed the expression of the toxin via at least two distinct regulatory pathways dependent upon sarA and agr. Furthermore rot, a member of SarA family, was shown to repress tst expression when overexpressed, although its deletion had no consistent measurable effect. We could not find any detectable effect of sarS, either by deletion or overexpression, suggesting that this regulator plays a minimal role in TSST-1 expression except when combined with disruption of sarA. Collectively, our results extend our understanding of complex multifactorial regulation of tst, revealing several layers of negative regulation. In addition to environmental stimuli thought to impact TSST-1 production, these findings support a model whereby sporadic mutation in a few key negative regulators can profoundly affect and enhance TSST-1 expression.

  1. Relevant Scatterers Characterization in SAR Images

    Science.gov (United States)

    Chaabouni, Houda; Datcu, Mihai

    2006-11-01

    Recognizing scenes in a single look meter resolution Synthetic Aperture Radar (SAR) images, requires the capability to identify relevant signal signatures in condition of variable image acquisition geometry, arbitrary objects poses and configurations. Among the methods to detect relevant scatterers in SAR images, we can mention the internal coherence. The SAR spectrum splitted in azimuth generates a series of images which preserve high coherence only for particular object scattering. The detection of relevant scatterers can be done by correlation study or Independent Component Analysis (ICA) methods. The present article deals with the state of the art for SAR internal correlation analysis and proposes further extensions using elements of inference based on information theory applied to complex valued signals. The set of azimuth looks images is analyzed using mutual information measures and an equivalent channel capacity is derived. The localization of the "target" requires analysis in a small image window, thus resulting in imprecise estimation of the second order statistics of the signal. For a better precision, a Hausdorff measure is introduced. The method is applied to detect and characterize relevant objects in urban areas.

  2. Lava Lake Level Drop and Related Ground Subsidence in the Nyiragongo Main Crater (D.R.Congo) Measured by Close-Range Photogrammetry and InSAR Time-Series

    Science.gov (United States)

    Smets, B.; d'Oreye, N.; Samsonov, S. V.; Nobile, A.; Geirsson, H.; Kervyn, F.

    2015-12-01

    Nyiragongo volcano is the most active African volcano and among the most active volcanoes on Earth. It is also among the infrequent volcanoes that host a long-lived lava lake. The morphology of the Nyiragongo main crater is characterized by 2 levels of remnant platforms partly preserved and attached to its inner flanks, which correspond to former lava lake levels, and by a bottom "active" platform, which delimits the current active lava lake. The elevation of the bottom platform increases through time, with successive lava lake overflows. After a period of low level between late 2010 and August 2011, the lava lake next came back to its highest level. However, on September 30, 2011, it started a long and progressive fall, reaching ~70 m below the bottom platform in July 2014. This recent evolution of the lava lake, which occurred at the same time period as eruptive events at the neighboring Nyamulagira volcano, was accompanied by a ground subsidence of the bottom platform, leading to the appearance of ring fissures. This ground deformation is restricted to the bottom platform and, hence, suggests a very shallow source for the observed movement. All these changes in the Nyiragongo main crater were recorded by time-series of photographs, allowing the 3D reconstruction of the crater using close-range photogrammetric techniques and, hence, a detailed measurement of the observed changes. The ground subsidence was also recorded by time-series of RADARSAT-2 and CosmoSky-Med SAR interferograms, providing more detailed information on the velocity of deformation. Based on field data and the photogrammetric and InSAR time-series measurements, several hypotheses on the cause(s) of these changes in the Nyiragongo crater are discussed. The present work also highlights the potential of close-range photogrammetry and high-resolution InSAR to study and monitor active volcanoes in Equatorial environment.

  3. Advanced Three-Dimensional Finite Element Modeling of a Slow Landslide through the Exploitation of DInSAR Measurements and in Situ Surveys

    Directory of Open Access Journals (Sweden)

    Vincenzo De Novellis

    2016-08-01

    Full Text Available In this paper, we propose an advanced methodology to perform three-dimensional (3D Finite Element (FE modeling to investigate the kinematical evolution of a slow landslide phenomenon. Our approach benefits from the effective integration of the available geological, geotechnical and satellite datasets to perform an accurate simulation of the landslide process. More specifically, we fully exploit the capability of the advanced Differential Synthetic Aperture Radar Interferometry (DInSAR technique referred to as the Small BAseline Subset (SBAS approach to provide spatially dense surface displacement information. Subsequently, we analyze the physical behavior characterizing the observed landslide phenomenon by means of an inverse analysis based on an optimization procedure. We focus on the Ivancich landslide phenomenon, which affects a residential area outside the historical center of the town of Assisi (Central Italy. Thanks to the large amount of available information, we have selected this area as a representative case study highlighting the capability of advanced 3D FE modeling to perform effective risk analyses of slow landslide processes and accurate urban development planning. In particular, the FE modeling is constrained by using the data from 7 litho-stratigraphic cross-sections and 62 stratigraphic boreholes; and the optimization procedure is carried out using the SBAS-DInSAR retrieved results by processing 39 SAR images collected by the Cosmo-SkyMed (CSK constellation in the 2009–2012 time span. The achieved results allow us to explore the spatial and temporal evolution of the slow-moving phenomenon and via comparison with the geomorphological data, to derive a synoptic view of the kinematical activity of the urban area affected by the Ivancich landslide.

  4. LTE modem power consumption, SAR and RF signal strength emulation

    DEFF Research Database (Denmark)

    Musiige, Deogratius; Vincent, Laulagnet; Anton, François

    2012-01-01

    This paper presents a new methodology for emulating the LTE modem power consumption, emitted SAR and RF signal strength when transmitting an LTE signal. The inputs of the methodology are: modem logical/protocol commands, time advance, near-field specifier, and antenna characteristics. The power...... emulation model(s) are computed by a two layer 451 neural network based on physical power measurements. SAR is emulated by polynomial interpolation models based on FDTD simulations. The accuracies of the mathematical function approximations for the emulation models of power and SAR are 5.19% and 3...

  5. RESEARCH ON AIRBORNE SAR IMAGING BASED ON ESC ALGORITHM

    Directory of Open Access Journals (Sweden)

    X. T. Dong

    2017-09-01

    Full Text Available Due to the ability of flexible, accurate, and fast obtaining abundant information, airborne SAR is significant in the field of Earth Observation and many other applications. Optimally the flight paths are straight lines, but in reality it is not the case since some portion of deviation from the ideal path is impossible to avoid. A small disturbance from the ideal line will have a major effect on the signal phase, dramatically deteriorating the quality of SAR images and data. Therefore, to get accurate echo information and radar images, it is essential to measure and compensate for nonlinear motion of antenna trajectories. By means of compensating each flying trajectory to its reference track, MOCO method corrects linear phase error and quadratic phase error caused by nonlinear antenna trajectories. Position and Orientation System (POS data is applied to acquiring accuracy motion attitudes and spatial positions of antenna phase centre (APC. In this paper, extend chirp scaling algorithm (ECS is used to deal with echo data of airborne SAR. An experiment is done using VV-Polarization raw data of C-band airborne SAR. The quality evaluations of compensated SAR images and uncompensated SAR images are done in the experiment. The former always performs better than the latter. After MOCO processing, azimuth ambiguity is declined, peak side lobe ratio (PSLR effectively improves and the resolution of images is improved obviously. The result shows the validity and operability of the imaging process for airborne SAR.

  6. Research on Airborne SAR Imaging Based on Esc Algorithm

    Science.gov (United States)

    Dong, X. T.; Yue, X. J.; Zhao, Y. H.; Han, C. M.

    2017-09-01

    Due to the ability of flexible, accurate, and fast obtaining abundant information, airborne SAR is significant in the field of Earth Observation and many other applications. Optimally the flight paths are straight lines, but in reality it is not the case since some portion of deviation from the ideal path is impossible to avoid. A small disturbance from the ideal line will have a major effect on the signal phase, dramatically deteriorating the quality of SAR images and data. Therefore, to get accurate echo information and radar images, it is essential to measure and compensate for nonlinear motion of antenna trajectories. By means of compensating each flying trajectory to its reference track, MOCO method corrects linear phase error and quadratic phase error caused by nonlinear antenna trajectories. Position and Orientation System (POS) data is applied to acquiring accuracy motion attitudes and spatial positions of antenna phase centre (APC). In this paper, extend chirp scaling algorithm (ECS) is used to deal with echo data of airborne SAR. An experiment is done using VV-Polarization raw data of C-band airborne SAR. The quality evaluations of compensated SAR images and uncompensated SAR images are done in the experiment. The former always performs better than the latter. After MOCO processing, azimuth ambiguity is declined, peak side lobe ratio (PSLR) effectively improves and the resolution of images is improved obviously. The result shows the validity and operability of the imaging process for airborne SAR.

  7. Reverse genetics of SARS-related coronavirus using vaccinia virus-based recombination.

    Directory of Open Access Journals (Sweden)

    Sjoerd H E van den Worm

    Full Text Available Severe acute respiratory syndrome (SARS is a zoonotic disease caused by SARS-related coronavirus (SARS-CoV that emerged in 2002 to become a global health concern. Although the original outbreak was controlled by classical public health measures, there is a real risk that another SARS-CoV could re-emerge from its natural reservoir, either in its original form or as a more virulent or pathogenic strain; in which case, the virus would be difficult to control in the absence of any effective antiviral drugs or vaccines. Using the well-studied SARS-CoV isolate HKU-39849, we developed a vaccinia virus-based SARS-CoV reverse genetic system that is both robust and biosafe. The SARS-CoV genome was cloned in separate vaccinia virus vectors, (vSARS-CoV-5prime and vSARS-CoV-3prime as two cDNAs that were subsequently ligated to create a genome-length SARS-CoV cDNA template for in vitro transcription of SARS-CoV infectious RNA transcripts. Transfection of the RNA transcripts into permissive cells led to the recovery of infectious virus (recSARS-CoV. Characterization of the plaques produced by recSARS-CoV showed that they were similar in size to the parental SARS-CoV isolate HKU-39849 but smaller than the SARS-CoV isolate Frankfurt-1. Comparative analysis of replication kinetics showed that the kinetics of recSARS-CoV replication are similar to those of SARS-CoV Frankfurt-1, although the titers of virus released into the culture supernatant are approximately 10-fold less. The reverse genetic system was finally used to generate a recSARS-CoV reporter virus expressing Renilla luciferase in order to facilitate the analysis of SARS-CoV gene expression in human dendritic cells (hDCs. In parallel, a Renilla luciferase gene was also inserted into the genome of human coronavirus 229E (HCoV-229E. Using this approach, we demonstrate that, in contrast to HCoV-229E, SARS-CoV is not able to mediate efficient heterologous gene expression in hDCs.

  8. Analysis of Dual- and Full-Circular Polarimetric SAR Modes for Rice Phenology Monitoring: An Experimental Investigation through Ground-Based Measurements

    Directory of Open Access Journals (Sweden)

    Yuta Izumi

    2017-04-01

    Full Text Available Circularly polarized synthetic aperture radar (CP-SAR is known to be insensitive to polarization mismatch losses caused by the Faraday rotation effect and antenna misalignment. Additionally, the dual-circular polarimetric (DCP mode has proven to have more polarimetric information than that of the corresponding mode of linear polarization, i.e., the dual-linear polarimetric (DLP mode. Owing to these benefits, this paper investigates the feasibility of CP-SAR for rice monitoring. A ground-based CP-radar system was exploited, and C-band anechoic chamber data of a self-cultivated Japanese rice paddy were acquired from germination to ripening stages. Temporal variations of polarimetric observables derived from full-circular polarimetric (FCP and DCP as well as synthetically generated DLP data are analyzed and assessed with regard to their effectiveness in phenology retrieval. Among different observations, the H / α ¯ plane and triangle plots obtained by three scattering components (surface, double-bounce, and volume scattering for both the FCP and DCP modes are confirmed to have reasonable capability in discriminating the relevant intervals of rice growth.

  9. Ribonucleocapsid Formation of SARS-COV Through Molecular Action of the N-Terminal Domain of N Protein

    Energy Technology Data Exchange (ETDEWEB)

    Saikatendu, K.S.; Joseph, J.S.; Subramanian, V.; Neuman, B.W.; Buchmeier, M.J.; Stevens, R.C.; Kuhn, P.; /Scripps Res. Inst.

    2007-07-12

    Conserved amongst all coronaviruses are four structural proteins, the matrix (M), small envelope (E) and spike (S) that are embedded in the viral membrane and the nucleocapsid phosphoprotein (N), which exists in a ribonucleoprotein complex in their lumen. The N terminal domain of coronaviral N proteins (N-NTD) provides a scaffold for RNA binding while the C-terminal domain (N-CTD) mainly acts as oligomerization modules during assembly. The C-terminus of N protein anchors it to the viral membrane by associating with M protein. We characterized the structures of N-NTD from severe acute respiratory syndrome coronavirus (SARS-CoV) in two crystal forms, at 1.17A (monoclinic) and 1.85 A (cubic) respectively, solved by molecular replacement using the homologous avian infectious bronchitis virus (IBV) structure. Flexible loops in the solution structure of SARS-CoV N-NTD are now shown to be well ordered around the beta-sheet core. The functionally important positively charged beta-hairpin protrudes out of the core and is oriented similar to that in the IBV N-NTD and is involved in crystal packing in the monoclinic form. In the cubic form, the monomers form trimeric units that stack in a helical array. Comparison of crystal packing of SARS-CoV and IBV N-NTDs suggest a common mode of RNA recognition, but probably associate differently in vivo during the formation of the ribonucleoprotein complex. Electrostatic potential distribution on the surface of homology models of related coronaviral N-NTDs hints that they employ different modes of both RNA recognition as well as oligomeric assembly, perhaps explaining why their nucleocapsids have different morphologies.

  10. The experience of SARS-related stigma at Amoy Gardens.

    Science.gov (United States)

    Lee, Sing; Chan, Lydia Y Y; Chau, Annie M Y; Kwok, Kathleen P S; Kleinman, Arthur

    2005-11-01

    Severe Acute Respiratory Syndrome (SARS) possesses characteristics that render it particularly prone to stigmatization. SARS-related stigma, despite its salience for public health and stigma research, has had little examination. This study combines survey and case study methods to examine subjective stigma among residents of Amoy Gardens (AG), the first officially recognized site of community outbreak of SARS in Hong Kong. A total of 903 residents of AG completed a self-report questionnaire derived from two focus groups conducted toward the end of the 3-month outbreak. Case studies of two residents who lived in Block E, the heart of the SARS epidemic at AG, complement the survey data. Findings show that stigma affected most residents and took various forms of being shunned, insulted, marginalized, and rejected in the domains of work, interpersonal relationships, use of services and schooling. Stigma was also associated with psychosomatic distress. Residents' strategies for diminishing stigma varied with gender, age, education, occupation, and proximity to perceived risk factors for SARS such as residential location, previous SARS infection and the presence of ex-SARS household members. Residents attributed stigma to government mismanagement, contagiousness of the mysterious SARS virus, and alarmist media reporting. Stigma clearly decreased, but never completely disappeared, after the outbreak. The findings confirm and add to existing knowledge on the varied origins, correlates, and impacts of stigma. They also highlight the synergistic roles of inconsistent health policy responses and risk miscommunication by the media in rapidly amplifying stigma toward an unfamiliar illness. While recognizing the intrinsically stigmatizing nature of public health measures to control SARS, we recommend that a consistent inter-sectoral approach is needed to minimize stigma and to make an effective health response to future outbreaks.

  11. PHARUS : PHased ARray Universal SAR

    NARCIS (Netherlands)

    Paquay, M.H.A.; Vermeulen, B.C.B.; Koomen, P.J.; Hoogeboom, P.; Snoeij, P.; Pouwels, H.

    1996-01-01

    In the Netherlands, a polarimetric C-band aircraft SAR (Synthetic Aperture Radar) has been developed. The project is called PHARUS, an acronm for PHased ARray Universal SAR. This instrument serves remote sensing applications. The antenna system contains 48 active modules (expandable to 96). A module

  12. How infectious is SARS virus

    Indian Academy of Sciences (India)

    First page Back Continue Last page Overview Graphics. How infectious is SARS virus. Influenza: 1 patient infects ten people. SARS: 1 patient infects 2-4 people. Incubation period 10 days. Are there `silent´ cases ? Is quarantine enough ? How will it behave if and when it returns ?

  13. Virions and intracellular nucleocapsids produced during mixed heterotypic influenza infection of MDCK cells

    International Nuclear Information System (INIS)

    Sklyanskaya, E.I.; Varich, N.L.; Amvrosieva, T.V.; Kaverin, N.V.

    1985-01-01

    Phenotypically mixed virus yields, obtained by coinfection of MDCK cells with influenza A/WSN/33 and B/Lee/40 viruses, contained both A/WSN/33 and B/Lee/40 NP proteins, as revealed by polyacrylamide gel electrophoresis of the purified 14 C-amino acids-labeled virus. Virions were lysed with 0.6 M KCl-Triton X-100 buffer, and nucleocapsids were immunoprecipitated with antibodies against NP protein of influenza A virus. Polyacrylamide gel electrophoresis of the immunoprecipitate revealed NP protein of A/WSN/33 but not of B/Lee/40 virus. However, in similar experiments with the lysates of doubly infected cells, the band of B/Lee/40 NP protein was revealed in the polyacrylamide gel electrophoresis patterns of the immunoprecipitates. In an attempt to analyze the RNA content of the immune complexes, the authors absorbed the lysates of doubly infected [ 3 H]uridine-labeled cells with protein A-containing Staphylococcus aureus covered with antibodies against the NP protein of influenza A virus. RNA extracted from the immune complexes contained genomic RNA segments of both A/WSN/33 and B/Lee/40 viruses. In control samples containing an artificial mixture of cell lysates separately infected with each virus, the analysis revealed homologous components (i.e., A/WSN/33 NP protein or RNA segments) in the immune complexes. The results suggest the presence of phenotypically mixed nucleocapsids in the cells doubly infected with influenza A and B viruses; in the course of the virion formation, the nucleocapsids lacking the heterologous NP protein are selected

  14. Sub-nucleocapsid nanoparticles: a nasal vaccine against respiratory syncytial virus.

    Directory of Open Access Journals (Sweden)

    Xavier Roux

    Full Text Available BACKGROUND: Bronchiolitis caused by the respiratory syncytial virus (RSV in infants less than two years old is a growing public health concern worldwide, and there is currently no safe and effective vaccine. A major component of RSV nucleocapsid, the nucleoprotein (N, has been so far poorly explored as a potential vaccine antigen, even though it is a target of protective anti-viral T cell responses and is remarkably conserved between human RSV A and B serotypes. We recently reported a method to produce recombinant N assembling in homogenous rings composed of 10-11 N subunits enclosing a bacterial RNA. These nanoparticles were named sub-nucleocapsid ring structure (N SRS. METHODOLOGY AND PRINCIPAL FINDINGS: The vaccine potential of N SRS was evaluated in a well-characterized and widely acknowledged mouse model of RSV infection. BALB/c adult mice were immunized intranasally with N SRS adjuvanted with the detoxified E. coli enterotoxin LT(R192G. Upon RSV challenge, vaccinated mice were largely protected against virus replication in the lungs, with a mild inflammatory lymphocytic and neutrophilic reaction in their airways. Mucosal immunization with N SRS elicited strong local and systemic immunity characterized by high titers of IgG1, IgG2a and IgA anti-N antibodies, antigen-specific CD8(+ T cells and IFN-gamma-producing CD4(+ T cells. CONCLUSIONS/SIGNIFICANCE: This is the first report of using nanoparticles formed by the recombinant nucleocapsid protein as an efficient and safe intra-nasal vaccine against RSV.

  15. Exploratory Data Analysis of Synthetic Aperture Radar (SAR Measurements to Distinguish the Sea Surface Expressions of Naturally-Occurring Oil Seeps from Human-Related Oil Spills in Campeche Bay (Gulf of Mexico

    Directory of Open Access Journals (Sweden)

    Gustavo de Araújo Carvalho

    2017-12-01

    Full Text Available An Exploratory Data Analysis (EDA aims to use Synthetic Aperture Radar (SAR measurements for discriminating between two oil slick types observed on the sea surface: naturally-occurring oil seeps versus human-related oil spills—the use of satellite sensors for this task is poorly documented in scientific literature. A long-term RADARSAT dataset (2008–2012 is exploited to investigate oil slicks in Campeche Bay (Gulf of Mexico. Simple Classification Algorithms to distinguish the oil slick type are designed based on standard multivariate data analysis techniques. Various attributes of geometry, shape, and dimension that describe the oil slick Size Information are combined with SAR-derived backscatter coefficients—sigma-(σo, beta-(βo, and gamma-(γo naught. The combination of several of these characteristics is capable of distinguishing the oil slick type with ~70% of overall accuracy, however, the sole and simple use of two specific oil slick’s Size Information (i.e., area and perimeter is equally capable of distinguishing seeps from spills. The data mining exercise of our EDA promotes a novel idea bridging petroleum pollution and remote sensing research, thus paving the way to further investigate the satellite synoptic view to express geophysical differences between seeped and spilled oil observed on the sea surface for systematic use.

  16. Vaccine efficacy in senescent mice challenged with recombinant SARS-CoV bearing epidemic and zoonotic spike variants.

    Directory of Open Access Journals (Sweden)

    Damon Deming

    2006-12-01

    Full Text Available In 2003, severe acute respiratory syndrome coronavirus (SARS-CoV was identified as the etiological agent of severe acute respiratory syndrome, a disease characterized by severe pneumonia that sometimes results in death. SARS-CoV is a zoonotic virus that crossed the species barrier, most likely originating from bats or from other species including civets, raccoon dogs, domestic cats, swine, and rodents. A SARS-CoV vaccine should confer long-term protection, especially in vulnerable senescent populations, against both the 2003 epidemic strains and zoonotic strains that may yet emerge from animal reservoirs. We report the comprehensive investigation of SARS vaccine efficacy in young and senescent mice following homologous and heterologous challenge.Using Venezuelan equine encephalitis virus replicon particles (VRP expressing the 2003 epidemic Urbani SARS-CoV strain spike (S glycoprotein (VRP-S or the nucleocapsid (N protein from the same strain (VRP-N, we demonstrate that VRP-S, but not VRP-N vaccines provide complete short- and long-term protection against homologous strain challenge in young and senescent mice. To test VRP vaccine efficacy against a heterologous SARS-CoV, we used phylogenetic analyses, synthetic biology, and reverse genetics to construct a chimeric virus (icGDO3-S encoding a synthetic S glycoprotein gene of the most genetically divergent human strain, GDO3, which clusters among the zoonotic SARS-CoV. icGD03-S replicated efficiently in human airway epithelial cells and in the lungs of young and senescent mice, and was highly resistant to neutralization with antisera directed against the Urbani strain. Although VRP-S vaccines provided complete short-term protection against heterologous icGD03-S challenge in young mice, only limited protection was seen in vaccinated senescent animals. VRP-N vaccines not only failed to protect from homologous or heterologous challenge, but resulted in enhanced immunopathology with eosinophilic

  17. Bistatic SAR: Imagery & Image Products.

    Energy Technology Data Exchange (ETDEWEB)

    Yocky, David A.; Wahl, Daniel E.; Jakowatz, Charles V,

    2014-10-01

    While typical SAR imaging employs a co-located (monostatic) RADAR transmitter and receiver, bistatic SAR imaging separates the transmitter and receiver locations. The transmitter and receiver geometry determines if the scattered signal is back scatter, forward scatter, or side scatter. The monostatic SAR image is backscatter. Therefore, depending on the transmitter/receiver collection geometry, the captured imagery may be quite different that that sensed at the monostatic SAR. This document presents imagery and image products formed from captured signals during the validation stage of the bistatic SAR research. Image quality and image characteristics are discussed first. Then image products such as two-color multi-view (2CMV) and coherent change detection (CCD) are presented.

  18. Nucleocapsid-like structures of Ebola virus reconstructed using electron tomography

    International Nuclear Information System (INIS)

    Noda, T.; Aoyama, K.; Sagara, H.; Kida, H.; Kawaoka, Y.

    2005-01-01

    Electron tomography (ET) is a new technique for high resolution, three-dimensional (3D) reconstruction of pleiomocphic mac. n)molecular complexes, such as virus components. By employing this technique, we resolved the 3D structure of Ebola virus nucleocapsid-like (NC-like) structures in the cytoplasm of cells expressing NP, VP24, and VP35: the minimum components required to form these NC-like structures. Reconstruction of these tubular NC-like structures of Ebola virus showed them to be composed of left-handed helices spaced at short intervals, which is structurally consistent with other non-segmented negative-strand RNA viruses

  19. Polarimetric SAR interferometry-based decomposition modelling for reliable scattering retrieval

    Science.gov (United States)

    Agrawal, Neeraj; Kumar, Shashi; Tolpekin, Valentyn

    2016-05-01

    Fully Polarimetric SAR (PolSAR) data is used for scattering information retrieval from single SAR resolution cell. Single SAR resolution cell may contain contribution from more than one scattering objects. Hence, single or dual polarized data does not provide all the possible scattering information. So, to overcome this problem fully Polarimetric data is used. It was observed in previous study that fully Polarimetric data of different dates provide different scattering values for same object and coefficient of determination obtained from linear regression between volume scattering and aboveground biomass (AGB) shows different values for the SAR dataset of different dates. Scattering values are important input elements for modelling of forest aboveground biomass. In this research work an approach is proposed to get reliable scattering from interferometric pair of fully Polarimetric RADARSAT-2 data. The field survey for data collection was carried out for Barkot forest during November 10th to December 5th, 2014. Stratified random sampling was used to collect field data for circumference at breast height (CBH) and tree height measurement. Field-measured AGB was compared with the volume scattering elements obtained from decomposition modelling of individual PolSAR images and PolInSAR coherency matrix. Yamaguchi 4-component decomposition was implemented to retrieve scattering elements from SAR data. PolInSAR based decomposition was the great challenge in this work and it was implemented with certain assumptions to create Hermitian coherency matrix with co-registered polarimetric interferometric pair of SAR data. Regression analysis between field-measured AGB and volume scattering element obtained from PolInSAR data showed highest (0.589) coefficient of determination. The same regression with volume scattering elements of individual SAR images showed 0.49 and 0.50 coefficients of determination for master and slave images respectively. This study recommends use of

  20. The nucleocapsid proteins of mouse hepatitis virus and severe acute respiratory syndrome coronavirus share the same IFN-β antagonizing mechanism: attenuation of PACT-mediated RIG-I/ MDA5 activation.

    Science.gov (United States)

    Ding, Zhen; Fang, Liurong; Yuan, Shuangling; Zhao, Ling; Wang, Xunlei; Long, Siwen; Wang, Mohan; Wang, Dang; Foda, Mohamed Frahat; Xiao, Shaobo

    2017-07-25

    Coronaviruses (CoVs) are a huge threat to both humans and animals and have evolved elaborate mechanisms to antagonize interferons (IFNs). Nucleocapsid (N) protein is the most abundant viral protein in CoV-infected cells, and has been identified as an innate immunity antagonist in several CoVs, including mouse hepatitis virus (MHV) and severe acute respiratory syndrome (SARS)-CoV. However, the underlying molecular mechanism(s) remain unclear. In this study, we found that MHV N protein inhibited Sendai virus and poly(I:C)-induced IFN-β production by targeting a molecule upstream of retinoic acid-induced gene I (RIG-I) and melanoma differentiation gene 5 (MDA5). Further studies showed that both MHV and SARS-CoV N proteins directly interacted with protein activator of protein kinase R (PACT), a cellular dsRNA-binding protein that can bind to RIG-I and MDA5 to activate IFN production. The N-PACT interaction sequestered the association of PACT and RIG-I/MDA5, which in turn inhibited IFN-β production. However, the N proteins from porcine epidemic diarrhea virus (PEDV) and porcine reproductive and respiratory syndrome virus (PRRSV), which are also classified in the order Nidovirales, did not interact and counteract with PACT. Taken together, our present study confirms that both MHV and SARS-CoV N proteins can perturb the function of cellular PACT to circumvent the innate antiviral response. However, this strategy does not appear to be used by all CoVs N proteins.

  1. Measuring the Impact of Wildfire on Active Layer Thickness in a Discontinuous Permafrost region using Interferometric Synthetic Aperture Radar (InSAR)

    Science.gov (United States)

    Michaelides, R. J.; Schaefer, K. M.; Zebker, H. A.; Liu, L.; Chen, J.; Parsekian, A.

    2017-12-01

    In permafrost regions, the active layer is defined as the uppermost portion of the permafrost table that is subject to annual freeze/thaw cycles. The active layer plays a crucial role in surface processes, surface hydrology, and vegetation succession; furthermore, trapped methane, carbon dioxide, and other greenhouse gases in permafrost are released into the atmosphere as permafrost thaws. A detailed understanding of active layer dynamics is therefore critical towards understanding the interactions between permafrost surface processes, freeze/thaw cycles, and climate-especially in regions across the Arctic subject to long-term permafrost degradation. The Yukon-Kuskokwim (YK) delta in southwestern Alaska is a region of discontinuous permafrost characterized by surface lakes, wetlands, and thermokarst depressions. Furthermore, extensive wildfires have burned across the YK delta in 2006, 2007, and 2015, impacting vegetation cover, surface soil moisture, and the active layer. Using data from the ALOS PALSAR, ALOS-2 PALSAR-2, and Sentinel-1A/B space borne synthetic aperture radar (SAR) systems, we generate a series of interferograms over a study site in the YK delta spanning 2007-2011, and 2014-present. Using the ReSALT (Remotely-Sensed Active Layer Thickness) technique, we demonstrate that active layer can be characterized over most of the site from the relative interferometric phase difference due to ground subsidence and rebound associated with the seasonal active layer freeze/thaw cycle. Additionally, we show that this technique successfully discriminates between burned and unburned regions, and can resolve increases in active layer thickness in burned regions on the order of 10's of cms. We use the time series of interferograms to discuss permafrost recovery following wildfire burn, and compare our InSAR observations with GPR and active layer probing data from a 2016 summer field campaign to the study site. Finally, we compare the advantages and disadvantages of

  2. Atmospheric Phase Delay in Sentinel SAR Interferometry

    Science.gov (United States)

    Krishnakumar, V.; Monserrat, O.; Crosetto, M.; Crippa, B.

    2018-04-01

    The repeat-pass Synthetic Aperture Radio Detection and Ranging (RADAR) Interferometry (InSAR) has been a widely used geodetic technique for observing the Earth's surface, especially for mapping the Earth's topography and deformations. However, InSAR measurements are prone to atmospheric errors. RADAR waves traverse the Earth's atmosphere twice and experience a delay due to atmospheric refraction. The two major layers of the atmosphere (troposphere and ionosphere) are mainly responsible for this delay in the propagating RADAR wave. Previous studies have shown that water vapour and clouds present in the troposphere and the Total Electron Content (TEC) of the ionosphere are responsible for the additional path delay in the RADAR wave. The tropospheric refractivity is mainly dependent on pressure, temperature and partial pressure of water vapour. The tropospheric refractivity leads to an increase in the observed range. These induced propagation delays affect the quality of phase measurement and introduce errors in the topography and deformation fields. The effect of this delay was studied on a differential interferogram (DInSAR). To calculate the amount of tropospheric delay occurred, the meteorological data collected from the Spanish Agencia Estatal de Meteorología (AEMET) and MODIS were used. The interferograms generated from Sentinel-1 carrying C-band Synthetic Aperture RADAR Single Look Complex (SLC) images acquired on the study area are used. The study area consists of different types of scatterers exhibiting different coherence. The existing Saastamoinen model was used to perform a quantitative evaluation of the phase changes caused by pressure, temperature and humidity of the troposphere during the study. Unless the phase values due to atmospheric disturbances are not corrected, it is difficult to obtain accurate measurements. Thus, the atmospheric error correction is essential for all practical applications of DInSAR to avoid inaccurate height and deformation

  3. ATMOSPHERIC PHASE DELAY IN SENTINEL SAR INTERFEROMETRY

    Directory of Open Access Journals (Sweden)

    V. Krishnakumar

    2018-04-01

    Full Text Available The repeat-pass Synthetic Aperture Radio Detection and Ranging (RADAR Interferometry (InSAR has been a widely used geodetic technique for observing the Earth’s surface, especially for mapping the Earth’s topography and deformations. However, InSAR measurements are prone to atmospheric errors. RADAR waves traverse the Earth’s atmosphere twice and experience a delay due to atmospheric refraction. The two major layers of the atmosphere (troposphere and ionosphere are mainly responsible for this delay in the propagating RADAR wave. Previous studies have shown that water vapour and clouds present in the troposphere and the Total Electron Content (TEC of the ionosphere are responsible for the additional path delay in the RADAR wave. The tropospheric refractivity is mainly dependent on pressure, temperature and partial pressure of water vapour. The tropospheric refractivity leads to an increase in the observed range. These induced propagation delays affect the quality of phase measurement and introduce errors in the topography and deformation fields. The effect of this delay was studied on a differential interferogram (DInSAR. To calculate the amount of tropospheric delay occurred, the meteorological data collected from the Spanish Agencia Estatal de Meteorología (AEMET and MODIS were used. The interferograms generated from Sentinel-1 carrying C-band Synthetic Aperture RADAR Single Look Complex (SLC images acquired on the study area are used. The study area consists of different types of scatterers exhibiting different coherence. The existing Saastamoinen model was used to perform a quantitative evaluation of the phase changes caused by pressure, temperature and humidity of the troposphere during the study. Unless the phase values due to atmospheric disturbances are not corrected, it is difficult to obtain accurate measurements. Thus, the atmospheric error correction is essential for all practical applications of DInSAR to avoid inaccurate

  4. Nucleocapsid gene analysis from an imported case of Middle East respiratory syndrome coronavirus, Malaysia

    Directory of Open Access Journals (Sweden)

    Nor-Aziyah Mat-Rahim

    2015-07-01

    Full Text Available Objective: To describe the complete nucleocapsid (N gene region of Middle East respiratory syndrome coronavirus (MERS-CoV from imported case in Malaysia and the relations with human- and camel-derived MERS-CoV. Methods: Combination of throat and nasal swab specimens was subjected to viral RNA extraction. For screening, the extracted RNA was subjected to real-time RT-PCR targeting upstream of E gene, open reading frame 1b and open reading frame 1a. For confirmation, the RNA was subjected to RT-PCR targeting partial part of the RNA-dependent RNA polymerase and nucleocapsid, followed by amplification of complete N gene region. Nucleotide sequencing of the first Malaysian case of MERS-CoV was performed following the confirmation with real-time RT-PCR detection. Results: Initial analysis of partial RNA-dependent RNA polymerase and N gene revealed that the nucleotides had high similarity to Jeddah_1_2013 strain. Analysis of complete N gene region (1 242 nucleotides from the case showed high similarity and yet distinct to the nucleotide sequences of camel-derived MERS-CoV. Conclusions: From the finding, there are possibilities that the patient acquired the infection from zoonotic transmission from dromedary camels.

  5. Autographa californica multiple nucleopolyhedrovirus ac53 plays a role in nucleocapsid assembly

    International Nuclear Information System (INIS)

    Liu Chao; Li Zhaofei; Wu Wenbi; Li Lingling; Yuan Meijin; Pan Lijing; Yang Kai; Pang Yi

    2008-01-01

    Autographa californica multiple nucleopolyhedrovirus (AcMNPV) orf53 (ac53) is a highly conserved gene existing in all sequenced Lepidoptera and Hymenoptera baculoviruses, but its function remains unknown. To investigate its role in the baculovirus life cycle, an ac53 deletion virus (vAc ac53KO-PH-GFP ) was generated through homologous recombination in Escherichia coli. Fluorescence and light microscopy and titration analysis revealed that vAc ac53KO-PH-GFP could not produce infectious budded virus in infected Sf9 cells. Real-time PCR demonstrated that the ac53 deletion did not affect the levels of viral DNA replication. Electron microscopy showed that many lucent tubular shells devoid of the nucleoprotein core are present in the virogenic stroma and ring zone, indicating that the ac53 knockout affected nucleocapsid assembly. With a recombinant virus expressing an Ac53-GFP fusion protein, we observed that Ac53 was distributed within the cytoplasm and nucleus at 24 h post-infection, but afterwards accumulated predominantly near the nucleus-cytoplasm boundary. These data demonstrate that ac53 is involved in nucleocapsid assembly and is an essential gene for virus production

  6. Feature-Based Nonlocal Polarimetric SAR Filtering

    Directory of Open Access Journals (Sweden)

    Xiaoli Xing

    2017-10-01

    Full Text Available Polarimetric synthetic aperture radar (PolSAR images are inherently contaminated by multiplicative speckle noise, which complicates the image interpretation and image analyses. To reduce the speckle effect, several adaptive speckle filters have been developed based on the weighted average of the similarity measures commonly depending on the model or probability distribution, which are often affected by the distribution parameters and modeling texture components. In this paper, a novel filtering method introduces the coefficient of variance ( CV and Pauli basis (PB to measure the similarity, and the two features are combined with the framework of the nonlocal mean filtering. The CV is used to describe the complexity of various scenes and distinguish the scene heterogeneity; moreover, the Pauli basis is able to express the polarimetric information in PolSAR image processing. This proposed filtering combines the CV and Pauli basis to improve the estimation accuracy of the similarity weights. Then, the similarity of the features is deduced according to the test statistic. Subsequently, the filtering is proceeded by using the nonlocal weighted estimation. The performance of the proposed filter is tested with the simulated images and real PolSAR images, which are acquired by AIRSAR system and ESAR system. The qualitative and quantitative experiments indicate the validity of the proposed method by comparing with the widely-used despeckling methods.

  7. One carbon metabolism in SAR11 pelagic marine bacteria.

    Directory of Open Access Journals (Sweden)

    Jing Sun

    Full Text Available The SAR11 Alphaproteobacteria are the most abundant heterotrophs in the oceans and are believed to play a major role in mineralizing marine dissolved organic carbon. Their genomes are among the smallest known for free-living heterotrophic cells, raising questions about how they successfully utilize complex organic matter with a limited metabolic repertoire. Here we show that conserved genes in SAR11 subgroup Ia (Candidatus Pelagibacter ubique genomes encode pathways for the oxidation of a variety of one-carbon compounds and methyl functional groups from methylated compounds. These pathways were predicted to produce energy by tetrahydrofolate (THF-mediated oxidation, but not to support the net assimilation of biomass from C1 compounds. Measurements of cellular ATP content and the oxidation of (14C-labeled compounds to (14CO(2 indicated that methanol, formaldehyde, methylamine, and methyl groups from glycine betaine (GBT, trimethylamine (TMA, trimethylamine N-oxide (TMAO, and dimethylsulfoniopropionate (DMSP were oxidized by axenic cultures of the SAR11 strain Ca. P. ubique HTCC1062. Analyses of metagenomic data showed that genes for C1 metabolism occur at a high frequency in natural SAR11 populations. In short term incubations, natural communities of Sargasso Sea microbial plankton expressed a potential for the oxidation of (14C-labeled formate, formaldehyde, methanol and TMAO that was similar to cultured SAR11 cells and, like cultured SAR11 cells, incorporated a much larger percentage of pyruvate and glucose (27-35% than of C1 compounds (2-6% into biomass. Collectively, these genomic, cellular and environmental data show a surprising capacity for demethylation and C1 oxidation in SAR11 cultures and in natural microbial communities dominated by SAR11, and support the conclusion that C1 oxidation might be a significant conduit by which dissolved organic carbon is recycled to CO(2 in the upper ocean.

  8. Expression, crystallization and preliminary crystallographic study of mouse hepatitis virus (MHV) nucleocapsid protein C-terminal domain

    International Nuclear Information System (INIS)

    Tong, Xiaohang; Ma, Yanlin; Li, Xuemei

    2010-01-01

    The C-terminal domain of mouse hepatitis virus nucleocapsid protein has been overexpressed in E. coli, purified and crystallized. The crystal belonged to space group P422, with unit-cell parameters a = 66.6, c = 50.8 Å, and diffracted to 2.20 Å resolution. Mouse hepatitis virus (MHV) belongs to the group II coronaviruses. The virus produces nine genes encoding 11 proteins that could be recognized as structural proteins and nonstructural proteins and are crucial for viral RNA synthesis. The nucleocapsid (N) protein, one of the structural proteins, interacts with the 30.4 kb virus genomic RNA to form the helical nucleocapsid and associates with the membrane glycoprotein via its C-terminus to stabilize virion assembly. Here, the expression and crystallization of the MHV nucleocapsid protein C-terminal domain are reported. The crystals diffracted to 2.20 Å resolution and belonged to space group P422, with unit-cell parameters a = 66.6, c = 50.8 Å. Assuming the presence of two molecules in the asymmetric unit, the solvent content is 43.0% (V M = 2.16 Å 3 Da −1 )

  9. SAR calculation using FDTD simulations

    OpenAIRE

    Ferro, Francisco Nabais; Pinto, Guilherme Taveira; Pinho, Pedro

    2009-01-01

    The main intend of this work, is to determinate the Specific Absorption Rate (SAR) on human head tissues exposed to radiation caused by sources of 900 and 1800MHz, since those are the typical frequencies for mobile communications systems nowadays. In order to determinate the SAR, has been used the FDTD (Finite Difference Time Domain), which is a numeric method in time domain, obtained from the Maxwell equations in differential mode. In order to do this, a computational model from the human he...

  10. HIV-1 nucleocapsid protein localizes efficiently to the nucleus and nucleolus

    International Nuclear Information System (INIS)

    Yu, Kyung Lee; Lee, Sun Hee; Lee, Eun Soo; You, Ji Chang

    2016-01-01

    The HIV-1 nucleocapsid (NC) is an essential viral protein containing two highly conserved retroviral-type zinc finger (ZF) motifs, which functions in multiple stages of the HIV-1 life cycle. Although a number of functions for NC either in its mature form or as a domain of Gag have been revealed, little is known about the intracellular localization of NC and, moreover, its role in Gag protein trafficking. Here, we have investigated various forms of HIV-1 NC protein for its cellular localization and found that the NC has a strong nuclear and nucleolar localization activity. The linker region, composed of a stretch of basic amino acids between the two ZF motifs, was necessary and sufficient for the activity. - Highlights: • HIV-1 NC possess a NLS and leads to nuclear and nucleolus localization. • Mutations in basic residues between two ZFs in NC decrease the nucleus localization. • ZFs of NC affect cytoplasmic organelles localization rather than nucleus localization.

  11. HIV-1 nucleocapsid protein localizes efficiently to the nucleus and nucleolus.

    Science.gov (United States)

    Yu, Kyung Lee; Lee, Sun Hee; Lee, Eun Soo; You, Ji Chang

    2016-05-01

    The HIV-1 nucleocapsid (NC) is an essential viral protein containing two highly conserved retroviral-type zinc finger (ZF) motifs, which functions in multiple stages of the HIV-1 life cycle. Although a number of functions for NC either in its mature form or as a domain of Gag have been revealed, little is known about the intracellular localization of NC and, moreover, its role in Gag protein trafficking. Here, we have investigated various forms of HIV-1 NC protein for its cellular localization and found that the NC has a strong nuclear and nucleolar localization activity. The linker region, composed of a stretch of basic amino acids between the two ZF motifs, was necessary and sufficient for the activity. Copyright © 2016 Elsevier Inc. All rights reserved.

  12. HIV-1 nucleocapsid protein localizes efficiently to the nucleus and nucleolus

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Kyung Lee; Lee, Sun Hee; Lee, Eun Soo; You, Ji Chang, E-mail: jiyou@catholic.ac.kr

    2016-05-15

    The HIV-1 nucleocapsid (NC) is an essential viral protein containing two highly conserved retroviral-type zinc finger (ZF) motifs, which functions in multiple stages of the HIV-1 life cycle. Although a number of functions for NC either in its mature form or as a domain of Gag have been revealed, little is known about the intracellular localization of NC and, moreover, its role in Gag protein trafficking. Here, we have investigated various forms of HIV-1 NC protein for its cellular localization and found that the NC has a strong nuclear and nucleolar localization activity. The linker region, composed of a stretch of basic amino acids between the two ZF motifs, was necessary and sufficient for the activity. - Highlights: • HIV-1 NC possess a NLS and leads to nuclear and nucleolus localization. • Mutations in basic residues between two ZFs in NC decrease the nucleus localization. • ZFs of NC affect cytoplasmic organelles localization rather than nucleus localization.

  13. Information theoretic bounds for compressed sensing in SAR imaging

    International Nuclear Information System (INIS)

    Jingxiong, Zhang; Ke, Yang; Jianzhong, Guo

    2014-01-01

    Compressed sensing (CS) is a new framework for sampling and reconstructing sparse signals from measurements significantly fewer than those prescribed by Nyquist rate in the Shannon sampling theorem. This new strategy, applied in various application areas including synthetic aperture radar (SAR), relies on two principles: sparsity, which is related to the signals of interest, and incoherence, which refers to the sensing modality. An important question in CS-based SAR system design concerns sampling rate necessary and sufficient for exact or approximate recovery of sparse signals. In the literature, bounds of measurements (or sampling rate) in CS have been proposed from the perspective of information theory. However, these information-theoretic bounds need to be reviewed and, if necessary, validated for CS-based SAR imaging, as there are various assumptions made in the derivations of lower and upper bounds on sub-Nyquist sampling rates, which may not hold true in CS-based SAR imaging. In this paper, information-theoretic bounds of sampling rate will be analyzed. For this, the SAR measurement system is modeled as an information channel, with channel capacity and rate-distortion characteristics evaluated to enable the determination of sampling rates required for recovery of sparse scenes. Experiments based on simulated data will be undertaken to test the theoretic bounds against empirical results about sampling rates required to achieve certain detection error probabilities

  14. UAVSAR and TerraSAR-X Based InSAR Detection of Localized Subsidence in the New Orleans Area

    Science.gov (United States)

    Blom, R. G.; An, K.; Jones, C. E.; Latini, D.

    2014-12-01

    Vulnerability of the US Gulf coast to inundation has received increased attention since hurricanes Katrina and Rita. Compounding effects of sea level rise, wetland loss, and regional and local subsidence makes flood protection a difficult challenge, and particularly for the New Orleans area. Key to flood protection is precise knowledge of elevations and elevation changes. Analysis of historical and continuing geodetic measurements show surprising complexity, including locations subsiding more rapidly than considered during planning of hurricane protection and coastal restoration projects. Combining traditional, precise geodetic data with interferometric synthetic aperture radar (InSAR) observations can provide geographically dense constraints on surface deformation. The Gulf Coast environment is challenging for InSAR techniques, especially with systems not designed for interferometry. We use two InSAR capable systems, the L- band (24 cm wavelength) airborne JPL/NASA UAVSAR, and the DLR/EADS Astrium spaceborne TerraSAR X-band (3 cm wavelength), and compare results. First, we are applying pair-wise InSAR to the longer wavelength UAVSAR data to detect localized elevation changes potentially impacting flood protection infrastructure from 2009 - 2014. We focus on areas on and near flood protection infrastructure to identify changes indicative of subsidence, structural deformation, and/or seepage. The Spaceborne TerraSAR X-band SAR system has relatively frequent observations, and dense persistent scatterers in urban areas, enabling measurement of very small displacements. We compare L-band UAVSAR results with permanent scatterer (PS-InSAR) and Short Baseline Subsets (SBAS) interferometric analyses of a stack composed by 28 TerraSAR X-band images acquired over the same period. Thus we can evaluate results from the different radar frequencies and analyses techniques. Preliminary results indicate subsidence features potentially of a variety of causes, including ground water

  15. Characterization of a single-nucleocapsid nucleopolyhedrovirus of Thysanoplusia orichalcea L. (Lepidoptera: Noctuidae) from Indonesia.

    Science.gov (United States)

    Cheng, X W; Carner, G R

    2000-05-01

    A single-nucleocapsid nucleopolyhedrovirus (NPV) isolated from Thysanoplusia orichalcea L. (Lepidoptera:Noctuidae) (ThorNPV) in Indonesia has tetrahedral occlusion bodies (OBs) with a width of 1. 22 microm (range = 0.803-1.931 microm). The length of the virion with an envelope averaged 0.29 and 0.23 microm without an envelope. ThorNPV was propagated in Pseudoplusia includens (Walker) and its authenticity was confirmed by sequence analysis of the polyhedrin gene of the ThorNPV produced in T. orichalcea and P. includens. Polyhedrin amino acid sequence analysis revealed that ThorNPV belongs to Group II of baculoviruses and is closely related to Trichoplusia ni single nucleocapsid NPV, sharing 97.6% sequence identity. Infectivity of ThorNPV against third instar P. includens was low, with a LD(50) value of 65,636 OBs/larva. Electron microscopy of infected tissues showed many polyhedra without virions embedded, which might explain the low virulence against P. includens. Differences in virion occlusion rates between individual cells in the same tissue suggested that the inoculum consisted of at least two variants that differed in the gene(s) controlling virion occlusion. In a host range test using the LD(50) value to P. includens against Spodoptera exigua, S. frugiperda, S. eridania, Anticarsia gemmatalis, Helicoverpa zea, Trichoplusia ni, and P. includens, P. includens was the only species infected. The virus infected primarily the fat body, tracheal epithelium, and hypodermis. The genomic size of the ThorNPV is 135 kb. Copyright 2000 Academic Press.

  16. The prion protein has DNA strand transfer properties similar to retroviral nucleocapsid protein.

    Science.gov (United States)

    Gabus, C; Auxilien, S; Péchoux, C; Dormont, D; Swietnicki, W; Morillas, M; Surewicz, W; Nandi, P; Darlix, J L

    2001-04-06

    The transmissible spongiform encephalopathies are fatal neurodegenerative diseases that are associated with the accumulation of a protease-resistant form of the cellular prion protein (PrP). Although PrP is highly conserved and widely expressed in vertebrates, its function remains a matter of speculation. Indeed PrP null mice develop normally and are healthy. Recent results show that PrP binds to nucleic acids in vitro and is found associated with retroviral particles. Furthermore, in mice the scrapie infectious process appears to be accelerated by MuLV replication. These observations prompted us to further investigate the interaction between PrP and nucleic acids, and compare it with that of the retroviral nucleocapsid protein (NC). As the major nucleic acid-binding protein of the retroviral particle, NC protein is tightly associated with the genomic RNA in the virion nucleocapsid, where it chaperones proviral DNA synthesis by reverse transcriptase. Our results show that the human prion protein (huPrP) functionally resembles NCp7 of HIV-1. Both proteins form large nucleoprotein complexes upon binding to DNA. They accelerate the hybridization of complementary DNA strands and chaperone viral DNA synthesis during the minus and plus DNA strand transfers necessary to generate the long terminal repeats. The DNA-binding and strand transfer properties of huPrP appear to map to the N-terminal fragment comprising residues 23 to 144, whereas the C-terminal domain is inactive. These findings suggest that PrP could be involved in nucleic acid metabolism in vivo. Copyright 2001 Academic Press.

  17. The Total Electron Content From InSAR and GNSS: A Midlatitude Study

    DEFF Research Database (Denmark)

    Musico, Elvira; Cesaroni, Claudio; Spogli, Luca

    2018-01-01

    The total electron content (TEC) measured from the interferometric synthetic aperture radar (InSAR) and froma dense network of global navigation satellite system (GNSS) receivers are used to assess the capability of InSAR to retrieve ionospheric information, when the tropospheric contribution...

  18. Monitoring Line-Infrastructure With Multisensor SAR Interferometry : Products and Performance Assessment Metrics

    NARCIS (Netherlands)

    Chang, L.; Dollevoet, R.P.B.J.; Hanssen, R.F.

    2018-01-01

    Satellite radar interferometry (InSAR) is an emerging technique to monitor the stability and health of line-infrastructure assets, such as railways, dams, and pipelines. However, InSAR is an opportunistic approach as the location and occurrence of its measurements (coherent scatterers) cannot be

  19. Detecting and monitoring UCG subsidence with InSAR

    Energy Technology Data Exchange (ETDEWEB)

    Mellors, R J; Foxall, W; Yang, X

    2012-03-23

    The use of interferometric synthetic aperture radar (InSAR) to measure surface subsidence caused by Underground Coal Gasification (UCG) is tested. InSAR is a remote sensing technique that uses Synthetic Aperture Radar images to make spatial images of surface deformation and may be deployed from satellite or an airplane. With current commercial satellite data, the technique works best in areas with little vegetation or farming activity. UCG subsidence is generally caused by roof collapse, which adversely affects UCG operations due to gas loss and is therefore important to monitor. Previous studies have demonstrated the usefulness of InSAR in measuring surface subsidence related to coal mining and surface deformation caused by a coal mining roof collapse in Crandall Canyon, Utah is imaged as a proof-of-concept. InSAR data is collected and processed over three known UCG operations including two pilot plants (Majuba, South Africa and Wulanchabu, China) and an operational plant (Angren, Uzbekistan). A clear f eature showing approximately 7 cm of subsidence is observed in the UCG field in Angren. Subsidence is not observed in the other two areas, which produce from deeper coal seams and processed a smaller volume. The results show that in some cases, InSAR is a useful tool to image UCG related subsidence. Data from newer satellites and improved algorithms will improve effectiveness.

  20. Parental influenza virion nucleocapsids are efficiently transported into the nuclei of murine cells expressing the nuclear interferon-induced Mx protein.

    OpenAIRE

    Broni, B; Julkunen, I; Condra, J H; Davies, M E; Berry, M J; Krug, R M

    1990-01-01

    The interferon-induced murine Mx1 protein, which is localized in the nucleus, most likely specifically blocks influenza virus replication by inhibiting nuclear viral mRNA synthesis, including the mRNA synthesis catalyzed by inoculum (parental) virion nucleocapsids (R. M. Krug, M. Shaw, B. Broni, G. Shapiro, and O. Haller, J. Virol. 56:201-206, 1985). We tested two possible mechanisms for this inhibition. First, we determined whether the transport of parental nucleocapsids into the nucleus was...

  1. Charge neutralization as the major factor for the assembly of nucleocapsid-like particles from C-terminal truncated hepatitis C virus core protein

    OpenAIRE

    Theo Luiz Ferraz de Souza; Sheila Maria Barbosa de Lima; Vanessa L. de Azevedo Braga; David S. Peabody; Davis Fernandes Ferreira; M. Lucia Bianconi; Andre Marco de Oliveira Gomes; Jerson Lima Silva; Andréa Cheble de Oliveira

    2016-01-01

    Background Hepatitis C virus (HCV) core protein, in addition to its structural role to form the nucleocapsid assembly, plays a critical role in HCV pathogenesis by interfering in several cellular processes, including microRNA and mRNA homeostasis. The C-terminal truncated HCV core protein (C124) is intrinsically unstructured in solution and is able to interact with unspecific nucleic acids, in the micromolar range, and to assemble into nucleocapsid-like particles (NLPs) in vitro. The specific...

  2. Autographa californica multiple nucleopolyhedrovirus ac75 is required for egress of nucleocapsids from the nucleus and formation of de novo intranuclear membrane microvesicles.

    Directory of Open Access Journals (Sweden)

    Ya-Jun Guo

    Full Text Available In this study, Autographa californica multiple nucleopolyhedrovirus ac75 was functionally characterized. Ac75 has homologs in all sequenced genomes of alphabaculoviruses, betabaculoviruses, and gammabaculoviruses. It was determined to encode a protein that is associated with the nucleocapsid of budded virus and with both envelope and nucleocapsids of occlusion-derived virus. Sf9 cells transfected by an ac75-knockout bacmid resulted in the infection being restricted to single cells. No budded virus were detected although viral DNA replication and late gene expression were unaffected. Electron microscopy revealed that the virogenic stroma, nucleocapsids and occlusion bodies appeared normal in the cells transfected by an ac75-knockout bacmid. However, the nucleocapsids were unenveloped, the occlusion bodies did not contain any virions or nucleocapsids, and no nucleocapsids were found outside the nucleus or spanning the nuclear membrane. In addition, de novo intranuclear membrane microvesicles that are the precursor of occlusion-derived virus envelopes were absent in the nuclei of transfected cells. Confocal microscopy showed that AC75 protein appeared in the cytoplasm as early as 6 hours post infection. It localized to the ring zone at the periphery of the nucleus from 15 to 24 hours post infection and demonstrated light blocky cloud-like distribution in the center of the nucleus. AC75 was found to co-immunoprecipitate with BV and ODV associated envelope protein ODV-E25. The data from this study suggest that ac75 is essential for induction of the intranuclear membrane microvesicles, it appears to be required for the intranuclear envelopment of nucleocapsids, and is also essential for egress of nucleocapsids from the nuclei, in infected cells.

  3. Source parameters of the 2016 Menyuan earthquake in the northeastern Tibetan Plateau determined from regional seismic waveforms and InSAR measurements

    Science.gov (United States)

    Liu, Yunhua; Zhang, Guohong; Zhang, Yingfeng; Shan, Xinjian

    2018-06-01

    On January 21st, 2016, a Ms 6.4 earthquake hit Menyuan County, Qinghai province, China. The nearest known fault is the Leng Long Ling (LLL) fault which is located approximately 7 km north of the epicenter. This fault has mainly shown sinistral strike-slip movement since the late Quaternary Period. However, the focal mechanism indicates that it is a thrust earthquake, which is different from the well-known strike-slip feature of the LLL fault. In this study, we determined the focal mechanism and primary nodal plane through multi-step inversions in the frequency and time domain by using the broadband regional seismic waveforms recorded by the China Digital Seismic Network (CDSN). Our results show that the rupture duration was short, within 0-2 s after the earthquake, and the rupture expanded upwards along the fault plane. Based on these fault parameters, we then solve for variable slip distribution on the fault plane using the InSAR data. We applied a three-segment fault model to simulate the arc-shaped structure of the northern LLL fault, and obtained a detailed slip distribution on the fault plane. The inversion results show that the maximum slip is 0.43 m, and the average slip angle is 78.8°, with a magnitude of Mw 6.0 and a focal depth of 9.38 km. With the geological structure and the inversion results taken into consideration, it can be suggested that this earthquake was caused by the arc-shaped secondary fault located at the north side of the LLL fault. The secondary fault, together with the LLL fault, forms a normal flower structure. The main LLL fault extends almost vertically into the base rock and the rocks between the two faults form a bulging fault block. Therefore, we infer that this earthquake is the manifestation of a neotectonics movement, in which the bulging fault block is lifted further up under the compresso-shear action caused by the Tibetan Plateau pushing towards the northwest direction.

  4. Crisis prevention and management during SARS outbreak, Singapore.

    Science.gov (United States)

    Quah, Stella R; Hin-Peng, Lee

    2004-02-01

    We discuss crisis prevention and management during the first 3 months of the severe acute respiratory syndrome (SARS) outbreak in Singapore. Four public health issues were considered: prevention measures, self-health evaluation, SARS knowledge, and appraisal of crisis management. We conducted telephone interviews with a representative sample of 1,201 adults, > or = 21 years of age. We found that sex, age, and attitude (anxiety and perception of open communication with authorities) were associated with practicing preventive measures. Analysis of Singapore's outbreak improves our understanding of the social dimensions of infectious disease outbreaks.

  5. Wave directional spectrum from SAR imagery

    Digital Repository Service at National Institute of Oceanography (India)

    Fernandes, A.A.; Sarma, Y.V.B.; Menon, H.B.; Vethamony, P.

    Gaussian smoothed SAR image spectra have been evaluated from 512 x 512 pixel subscenes of image mode ERS-1 SAR scenes off Goa, Visakhapatnam, Paradeep and Portugal. The two recently acquired scenes off Portugal showed the signature of swell...

  6. Novel Polarimetric SAR Interferometry Algorithms, Phase I

    Data.gov (United States)

    National Aeronautics and Space Administration — Polarimetric radar interferometry (PolInSAR) is a new SAR imaging mode that is rapidly becoming an important technique for bare earth topographic mapping, tree...

  7. Monitoring of Land-Surface Deformation in the Karamay Oilfield, Xinjiang, China, Using SAR Interferometry

    Directory of Open Access Journals (Sweden)

    Yusupujiang Aimaiti

    2017-07-01

    Full Text Available Synthetic Aperture Radar (SAR interferometry is a technique that provides high-resolution measurements of the ground displacement associated with various geophysical processes. To investigate the land-surface deformation in Karamay, a typical oil-producing city in the Xinjiang Uyghur Autonomous Region, China, Advanced Land Observing Satellite (ALOS Phased Array L-band Synthetic Aperture Radar (PALSAR data were acquired for the period from 2007 to 2009, and a two-pass differential SAR interferometry (D-InSAR process was applied. The experimental results showed that two sites in the north-eastern part of the city exhibit a clear indication of land deformation. For a further evaluation of the D-InSAR result, the Persistent Scatterer (PS and Small Baseline Subset (SBAS-InSAR techniques were applied for 21 time series Environmental Satellite (ENVISAT C-band Advanced Synthetic Aperture Radar (ASAR data from 2003 to 2010. The comparison between the D-InSAR and SBAS-InSAR measurements had better agreement than that from the PS-InSAR measurement. The maximum deformation rate attributed to subsurface water injection for the period from 2003 to 2010 was up to approximately 33 mm/year in the line of sight (LOS direction. The interferometric phase change from November 2007 to June 2010 showed a clear deformation pattern, and the rebound center has been expanding in scale and increasing in quantity.

  8. SAR matrices: automated extraction of information-rich SAR tables from large compound data sets.

    Science.gov (United States)

    Wassermann, Anne Mai; Haebel, Peter; Weskamp, Nils; Bajorath, Jürgen

    2012-07-23

    We introduce the SAR matrix data structure that is designed to elucidate SAR patterns produced by groups of structurally related active compounds, which are extracted from large data sets. SAR matrices are systematically generated and sorted on the basis of SAR information content. Matrix generation is computationally efficient and enables processing of large compound sets. The matrix format is reminiscent of SAR tables, and SAR patterns revealed by different categories of matrices are easily interpretable. The structural organization underlying matrix formation is more flexible than standard R-group decomposition schemes. Hence, the resulting matrices capture SAR information in a comprehensive manner.

  9. Convolutional Neural Networks for SAR Image Segmentation

    DEFF Research Database (Denmark)

    Malmgren-Hansen, David; Nobel-Jørgensen, Morten

    2015-01-01

    Segmentation of Synthetic Aperture Radar (SAR) images has several uses, but it is a difficult task due to a number of properties related to SAR images. In this article we show how Convolutional Neural Networks (CNNs) can easily be trained for SAR image segmentation with good results. Besides...

  10. Imaging in severe acute respiratory syndrome (SARS)

    International Nuclear Information System (INIS)

    Antonio, G.E.; Wong, K.T.; Chu, W.C.W.; Hui, D.S.C.; Cheng, F.W.T.; Yuen, E.H.Y.; Chung, S.S.C.; Fok, T.F.; Sung, J.J.Y.; Ahuja, A.T.

    2003-01-01

    Severe acute respiratory syndrome (SARS) is a highly infectious disease caused by a novel coronavirus, and has become pandemic within a short period of time. Imaging plays an important role in the diagnosis, management and follow-up of patients with SARS. The current status of imaging in SARS is presented in this review

  11. Precision Rectification of Airborne SAR Image

    DEFF Research Database (Denmark)

    Dall, Jørgen; Liao, M.; Zhang, Zhe

    1997-01-01

    A simple and direct procedure for the rectification of a certain class of airborne SAR data is presented. The relief displacements of SAR data are effectively removed by means of a digital elevation model and the image is transformed to the ground coordinate system. SAR data from the Danish EMISAR...

  12. Localized landslide risk assessment with multi pass L band DInSAR analysis

    Science.gov (United States)

    Yun, HyeWon; Rack Kim, Jung; Lin, Shih-Yuan; Choi, YunSoo

    2014-05-01

    In terms of data availability and error correction, landslide forecasting by Differential Interferometric SAR (DInSAR) analysis is not easy task. Especially, the landslides by the anthropogenic construction activities frequently occurred in the localized cutting side of mountainous area. In such circumstances, it is difficult to attain sufficient enough accuracy because of the external factors inducing the error component in electromagnetic wave propagation. For instance, the local climate characteristics such as orographic effect and the proximity to water source can produce the significant anomalies in the water vapor distribution and consequently result in the error components of InSAR phase angle measurements. Moreover the high altitude parts of target area cause the stratified tropospheric delay error in DInSAR measurement. The other obstacle in DInSAR observation over the potential landside site is the vegetation canopy which causes the decorrelation of InSAR phase. Thus rather than C band sensor such as ENVISAT, ERS and RADARSAT, DInSAR analysis with L band ALOS PLASAR is more recommendable. Together with the introduction of L band DInSAR analysis, the improved DInSAR technique to cope all above obstacles is necessary. Thus we employed two approaches i.e. StaMPS/MTI (Stanford Method for Persistent Scatterers/Multi-Temporal InSAR, Hopper et al., 2007) which was newly developed for extracting the reliable deformation values through time series analysis and two pass DInSAR with the error term compensation based on the external weather information in this study. Since the water vapor observation from spaceborne radiometer is not feasible by the temporal gap in this case, the quantities from weather Research Forecasting (WRF) with 1 km spatial resolution was used to address the atmospheric phase error in two pass DInSAR analysis. Also it was observed that base DEM offset with time dependent perpendicular baselines of InSAR time series produce a significant error

  13. First large scale chemical synthesis of the 72 amino acid HIV-1 nucleocapsid protein NCp7 in an active form.

    Science.gov (United States)

    de Rocquigny, H; Ficheux, D; Gabus, C; Fournié-Zaluski, M C; Darlix, J L; Roques, B P

    1991-10-31

    The nucleocapsid protein (NC) of the human immunodeficiency virus type 1 plays a crucial role in the formation of infectious viral particles and therefore should be a major target for the development of antiviral agents. This requires an investigation of NC protein structure and of its interactions with both primer tRNA(Lys,3) and genomic RNA. Nucleocapsid protein NCp7, which results from the maturation of NCp15, contains two zinc fingers flanked by sequences rich in basic and proline residues. Here we report the first synthesis of large quantities of NCp7 able to activate HIV-1 RNA dimerization and replication primer tRNA(Lys,3) annealing to the initiation site of reverse transcription. In addition UV spectroscopic analyses performed to characterize the Co2+ binding properties of each zinc finger suggest that the two fingers probably interact in NCp7.

  14. Detection of macroalgae blooms by complex SAR imagery

    International Nuclear Information System (INIS)

    Shen, Hui; Perrie, William; Liu, Qingrong; He, Yijun

    2014-01-01

    Highlights: • Complex SAR imagery enables better recognition of macroalgae patches. • Combination of different information in SAR matrix forms new index factors. • Proposed index factors contribute to unsupervised recognition of macroalgae. -- Abstract: Increased frequency and enhanced damage to the marine environment and to human society caused by green macroalgae blooms demand improved high-resolution early detection methods. Conventional satellite remote sensing methods via spectra radiometers do not work in cloud-covered areas, and therefore cannot meet these demands for operational applications. We present a methodology for green macroalgae bloom detection based on RADARSAT-2 synthetic aperture radar (SAR) images. Green macroalgae patches exhibit different polarimetric characteristics compared to the open ocean surface, in both the amplitude and phase domains of SAR-measured complex radar backscatter returns. In this study, new index factors are defined which have opposite signs in green macroalgae-covered areas, compared to the open water surface. These index factors enable unsupervised detection from SAR images, providing a high-resolution new tool for detection of green macroalgae blooms, which can potentially contribute to a better understanding of the mechanisms related to outbreaks of green macroalgae blooms in coastal areas throughout the world ocean

  15. Fast Superpixel Segmentation Algorithm for PolSAR Images

    Directory of Open Access Journals (Sweden)

    Zhang Yue

    2017-10-01

    Full Text Available As a pre-processing technique, superpixel segmentation algorithms should be of high computational efficiency, accurate boundary adherence and regular shape in homogeneous regions. A fast superpixel segmentation algorithm based on Iterative Edge Refinement (IER has shown to be applicable on optical images. However, it is difficult to obtain the ideal results when IER is applied directly to PolSAR images due to the speckle noise and small or slim regions in PolSAR images. To address these problems, in this study, the unstable pixel set is initialized as all the pixels in the PolSAR image instead of the initial grid edge pixels. In the local relabeling of the unstable pixels, the fast revised Wishart distance is utilized instead of the Euclidean distance in CIELAB color space. Then, a post-processing procedure based on dissimilarity measure is empolyed to remove isolated small superpixels as well as to retain the strong point targets. Finally, extensive experiments based on a simulated image and a real-world PolSAR image from Airborne Synthetic Aperture Radar (AirSAR are conducted, showing that the proposed algorithm, compared with three state-of-the-art methods, performs better in terms of several commonly used evaluation criteria with high computational efficiency, accurate boundary adherence, and homogeneous regularity.

  16. Identification of Rift Valley Fever Virus Nucleocapsid Protein-RNA Binding Inhibitors Using a High-Throughput Screening Assay

    OpenAIRE

    Ellenbecker, Mary; Lanchy, Jean-Marc; Lodmell, J. Stephen

    2012-01-01

    Rift Valley fever virus (RVFV) is an emerging infectious pathogen that causes severe disease in humans and livestock and has the potential for global spread. Currently, there is no proven effective treatment for RVFV infection and there is no licensed vaccine. Inhibition of RNA binding to the essential viral nucleocapsid (N) protein represents a potential anti-viral therapeutic strategy because all of the functions performed by N during infection involve RNA binding. To target this interactio...

  17. Generation of Recombinant Schmallenberg Virus Nucleocapsid Protein in Yeast and Development of Virus-Specific Monoclonal Antibodies

    Directory of Open Access Journals (Sweden)

    Justas Lazutka

    2014-01-01

    Full Text Available Schmallenberg virus (SBV, discovered in continental Europe in late 2011, causes mild clinical signs in adult ruminants, including diarrhoea and reduced milk yield. However, fetal infection can lead to severe malformation in newborn offspring. To develop improved reagents for SBV serology, a high-level yeast expression system was employed to produce recombinant SBV nucleocapsid (N protein. Recombinant SBV N protein was investigated as an antigen in SBV-specific IgG enzyme immunoassay and used for generation of monoclonal antibodies (MAbs. Yeast-expressed SBV N protein was reactive with anti-SBV IgG-positive cow serum specimens collected from different farms of Lithuania. After immunization of mice with recombinant SBV N protein, four MAbs were generated. The MAbs raised against recombinant SBV N protein reacted with native viral nucleocapsids in SBV-infected BHK cells by immunofluorescence assay. The reactivity of recombinant N protein with SBV-positive cow serum specimens and the ability of the MAbs to recognize virus-infected cells confirm the antigenic similarity between yeast-expressed SBV N protein and native viral nucleocapsids. Our study demonstrates that yeast expression system is suitable for high-level production of recombinant SBV N protein and provides the first evidence on the presence of SBV-specific antibodies in cow serum specimens collected in Lithuania.

  18. Quantitative Characterization of Configurational Space Sampled by HIV-1 Nucleocapsid Using Solution NMR, X-ray Scattering and Protein Engineering.

    Science.gov (United States)

    Deshmukh, Lalit; Schwieters, Charles D; Grishaev, Alexander; Clore, G Marius

    2016-06-03

    Nucleic-acid-related events in the HIV-1 replication cycle are mediated by nucleocapsid, a small protein comprising two zinc knuckles connected by a short flexible linker and flanked by disordered termini. Combining experimental NMR residual dipolar couplings, solution X-ray scattering and protein engineering with ensemble simulated annealing, we obtain a quantitative description of the configurational space sampled by the two zinc knuckles, the linker and disordered termini in the absence of nucleic acids. We first compute the conformational ensemble (with an optimal size of three members) of an engineered nucleocapsid construct lacking the N- and C-termini that satisfies the experimental restraints, and then validate this ensemble, as well as characterize the disordered termini, using the experimental data from the full-length nucleocapsid construct. The experimental and computational strategy is generally applicable to multidomain proteins. Differential flexibility within the linker results in asymmetric motion of the zinc knuckles which may explain their functionally distinct roles despite high sequence identity. One of the configurations (populated at a level of ≈40 %) closely resembles that observed in various ligand-bound forms, providing evidence for conformational selection and a mechanistic link between protein dynamics and function. © 2016 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  19. THz-SAR Vibrating Target Imaging via the Bayesian Method

    Directory of Open Access Journals (Sweden)

    Bin Deng

    2017-01-01

    Full Text Available Target vibration bears important information for target recognition, and terahertz, due to significant micro-Doppler effects, has strong advantages for remotely sensing vibrations. In this paper, the imaging characteristics of vibrating targets with THz-SAR are at first analyzed. An improved algorithm based on an excellent Bayesian approach, that is, the expansion-compression variance-component (ExCoV method, has been proposed for reconstructing scattering coefficients of vibrating targets, which provides more robust and efficient initialization and overcomes the deficiencies of sidelobes as well as artifacts arising from the traditional correlation method. A real vibration measurement experiment of idle cars was performed to validate the range model. Simulated SAR data of vibrating targets and a tank model in a real background in 220 GHz show good performance at low SNR. Rapidly evolving high-power terahertz devices will offer viable THz-SAR application at a distance of several kilometers.

  20. Robust adaptive multichannel SAR processing based on covariance matrix reconstruction

    Science.gov (United States)

    Tan, Zhen-ya; He, Feng

    2018-04-01

    With the combination of digital beamforming (DBF) processing, multichannel synthetic aperture radar(SAR) systems in azimuth promise well in high-resolution and wide-swath imaging, whereas conventional processing methods don't take the nonuniformity of scattering coefficient into consideration. This paper brings up a robust adaptive Multichannel SAR processing method which utilizes the Capon spatial spectrum estimator to obtain the spatial spectrum distribution over all ambiguous directions first, and then the interference-plus-noise covariance Matrix is reconstructed based on definition to acquire the Multichannel SAR processing filter. The performance of processing under nonuniform scattering coefficient is promoted by this novel method and it is robust again array errors. The experiments with real measured data demonstrate the effectiveness and robustness of the proposed method.

  1. Multi-image Matching of Airborne SAR Imagery by SANCC

    Directory of Open Access Journals (Sweden)

    DING Hao

    2015-03-01

    Full Text Available In order to improve accuracy of SAR matching, a multi-image matching method based on sum of adaptive normalized cross-correlation (SANCC is proposed. It utilizes geometrical and radiometric information of multi-baselinesynthetic aperture radar (SARimages effectively. Firstly, imaging parameters, platform parameters and approximate digital surface model (DSM are used to predict matching line. Secondly, similarity and proximity in Gestalt theory are introduced to SANCC, and SANCC measures of potential matching points along the matching line are calculated. Thirdly, multi-image matching results and object coordinates of matching points are obtained by winner-take-all (WTA optimization strategy. The approach has been demonstrated with airborne SAR images acquired by a Chinese airborne SAR system (CASMSAR system. The experimental results indicate that the proposed algorithm is effective for providing dense and accuracy matching points, reducing the number of mismatches caused by repeated textures, and offering a better solution to match in poor textured areas.

  2. Polarimetric scattering and SAR information retrieval

    CERN Document Server

    Jin, Ya-Qiu

    2013-01-01

    Taking an innovative look at Synthetic Aperture Radar (SAR), this practical reference fully covers new developments in SAR and its various methodologies and enables readers to interpret SAR imagery An essential reference on polarimetric Synthetic Aperture Radar (SAR), this book uses scattering theory and radiative transfer theory as a basis for its treatment of topics. It is organized to include theoretical scattering models and SAR data analysis techniques, and presents cutting-edge research on theoretical modelling of terrain surface. The book includes quantitative app

  3. Stalking SARS: CDC at Work

    Centers for Disease Control (CDC) Podcasts

    2014-05-22

    In this podcast for kids, the Kidtastics talk about the SARS outbreak and how CDC worked to solve the mystery.  Created: 5/22/2014 by National Center for Immunization and Respiratory Diseases (NCIRD).   Date Released: 5/22/2014.

  4. SARS – virus jumps species

    Indian Academy of Sciences (India)

    SARS – virus jumps species. Coronavirus reshuffles genes; Rotteir et al, Rotterdam showed the virus to jump from cats to mouse cells after single gene mutation ? Human disease due to virus jumping from wild or domestic animals; Present favourite animal - the cat; - edible or domestic.

  5. Beyond PSInSAR: the SQUEESAR Approach

    Science.gov (United States)

    Ferretti, A.; Novali, F.; Fumagalli, A.; Prati, C.; Rocca, F.; Rucci, A.

    2009-12-01

    After a decade since the first results on ERS data, Permanent Scatterer (PS) InSAR has become an operational technology for detecting and monitoring slow surface deformation phenomena such as subsidence and uplift, landslides, seismic fault creeping, volcanic inflation, etc. Processing procedures have been continuously updated, but the core of the algorithm has not been changed significantly. As well known, in PSInSAR, the main target is the identification of individual pixels that exhibit a “PS behavior”, i.e. they are only slightly affected by both temporal and geometrical decorrelation. Typically, these scatterers correspond to man-made objects, but PS have been identified also in non-urban areas, where exposed rocks or outcrops can indeed create good radar benchmarks and enable high-quality displacement measurements. Contrary to interferogram stacking techniques, PS analyses are carried out on a pixel-by-pixel basis, with no filtering of the interferograms, in order to preserve phase values from possible incoherent clutter surrounding good radar targets. In fact, any filtering process implies a spatial smoothing of the data that could compromise - rather than improve - phase coherence, at least for isolated PS. Although the PS approach usually allows one to retrieve high quality deformation measurements on a sparse grid of good radar targets, in some datasets it is quite evident how the number of pixels where some information can be extracted could be significantly increased by relaxing the hypothesis on target coherence and searching for pixels where the coherence level is high enough at least in some interferograms of the data-stack, not necessarily all. The idea of computing a “coherence matrix” for each pixel of the area of interest have been already proposed in previous papers, together with a statistical estimation of some physical parameters of interest (e.g. the average displacement rate) based on the covariance matrix. In past publications

  6. Permanent scatterer InSAR processing: Forsmark

    International Nuclear Information System (INIS)

    Dehls, John F.

    2006-04-01

    It has been speculated that slow, aseismic movement may be occurring along some of the fracture zones crosscutting the Forsmark area. The purpose of this study is to determine if it is possible to measure such movement using dInSAR. Differential SAR Interferometry (DInSAR) is a technique that compares the phases of multiple radar images of an area to measure surface change. The method has the potential to detect millimetric surface deformation along the sensor - target line-of-sight. Differences in phase between two images are easily viewed by combining, or interfering, the two phase-images. In the resulting image, the waves will either reinforce or cancel one another, depending upon the relative phases. The resulting image is called an interferogram and contains concentric bands of colour, or fringes, that are related to topography and/or surface deformation. New algorithms use many images acquired over a long time period to determine the movement history of individual objects, referred to as permanent scatterers. In the current project, standard PSInSAR processing was performed on 40 ERS-1 and ERS-2 scenes. The total area processed is approximately 1,500 km 2 . Slightly less than 20,000 permanent scatterers were identified.The highest densities were obtained along the coast and on the islands, where natural outcrops are more abundant. Two main classes of objects act as permanent scatterers in this area. The first are natural reflectors, such as rocks. The second are man-made reflectors, such as parts of buildings. Numerous local movements were found in the study area, relating to building subsidence, or compaction of anthropogenic fill. The dataset was divided into three groups for analysis, based upon the location of regional lineaments provided by SKB. Both statistical and geostatistical techniques were used. The median velocity of the three blocks did not differ by more than 0.2 mm/yr. This is not considered significant, given the possible magnitude of errors

  7. Permanent scatterer InSAR processing: Forsmark

    Energy Technology Data Exchange (ETDEWEB)

    Dehls, John F [Geological Survey of Norway, Trondheim (Norway)

    2006-04-15

    It has been speculated that slow, aseismic movement may be occurring along some of the fracture zones crosscutting the Forsmark area. The purpose of this study is to determine if it is possible to measure such movement using dInSAR. Differential SAR Interferometry (DInSAR) is a technique that compares the phases of multiple radar images of an area to measure surface change. The method has the potential to detect millimetric surface deformation along the sensor - target line-of-sight. Differences in phase between two images are easily viewed by combining, or interfering, the two phase-images. In the resulting image, the waves will either reinforce or cancel one another, depending upon the relative phases. The resulting image is called an interferogram and contains concentric bands of colour, or fringes, that are related to topography and/or surface deformation. New algorithms use many images acquired over a long time period to determine the movement history of individual objects, referred to as permanent scatterers. In the current project, standard PSInSAR processing was performed on 40 ERS-1 and ERS-2 scenes. The total area processed is approximately 1,500 km{sup 2}. Slightly less than 20,000 permanent scatterers were identified.The highest densities were obtained along the coast and on the islands, where natural outcrops are more abundant. Two main classes of objects act as permanent scatterers in this area. The first are natural reflectors, such as rocks. The second are man-made reflectors, such as parts of buildings. Numerous local movements were found in the study area, relating to building subsidence, or compaction of anthropogenic fill. The dataset was divided into three groups for analysis, based upon the location of regional lineaments provided by SKB. Both statistical and geostatistical techniques were used. The median velocity of the three blocks did not differ by more than 0.2 mm/yr. This is not considered significant, given the possible magnitude of

  8. Nucleocapsid Protein from Fig Mosaic Virus Forms Cytoplasmic Agglomerates That Are Hauled by Endoplasmic Reticulum Streaming

    Science.gov (United States)

    Ishikawa, Kazuya; Miura, Chihiro; Maejima, Kensaku; Komatsu, Ken; Hashimoto, Masayoshi; Tomomitsu, Tatsuya; Fukuoka, Misato; Yusa, Akira; Yamaji, Yasuyuki

    2014-01-01

    ABSTRACT Although many studies have demonstrated intracellular movement of viral proteins or viral replication complexes, little is known about the mechanisms of their motility. In this study, we analyzed the localization and motility of the nucleocapsid protein (NP) of Fig mosaic virus (FMV), a negative-strand RNA virus belonging to the recently established genus Emaravirus. Electron microscopy of FMV-infected cells using immunogold labeling showed that NPs formed cytoplasmic agglomerates that were predominantly enveloped by the endoplasmic reticulum (ER) membrane, while nonenveloped NP agglomerates also localized along the ER. Likewise, transiently expressed NPs formed agglomerates, designated NP bodies (NBs), in close proximity to the ER, as was the case in FMV-infected cells. Subcellular fractionation and electron microscopic analyses of NP-expressing cells revealed that NBs localized in the cytoplasm. Furthermore, we found that NBs moved rapidly with the streaming of the ER in an actomyosin-dependent manner. Brefeldin A treatment at a high concentration to disturb the ER network configuration induced aberrant accumulation of NBs in the perinuclear region, indicating that the ER network configuration is related to NB localization. Dominant negative inhibition of the class XI myosins, XI-1, XI-2, and XI-K, affected both ER streaming and NB movement in a similar pattern. Taken together, these results showed that NBs localize in the cytoplasm but in close proximity to the ER membrane to form enveloped particles and that this causes passive movements of cytoplasmic NBs by ER streaming. IMPORTANCE Intracellular trafficking is a primary and essential step for the cell-to-cell movement of viruses. To date, many studies have demonstrated the rapid intracellular movement of viral factors but have failed to provide evidence for the mechanism or biological significance of this motility. Here, we observed that agglomerates of nucleocapsid protein (NP) moved rapidly

  9. hPEPT1 Affinity and Translocation of Selected Gln-Sar and Glu-Sar Dipeptide Derivatives

    DEFF Research Database (Denmark)

    Eriksson, A. H.; Elm, Peter L.; Begtrup, Mikael

    2005-01-01

    using 14C-labeled Gly-Sar. Translocation was measured as fluorescence ratios induced by the substrates using the fluorescent probe BCECF and an epifluorescence microscope setup. All compounds showed high affinity to hPEPT1, but only the amides l-Gln(N,N-dimethyl)-Sar and l-Gln(N-piperidinyl)-Sar were...... been suggested. However, these are not necessarily predictive of compounds that are actually translocated by hPEPT1. More information on affinity to and translocation via hPEPT1 of side-chain-modified dipeptides may be gained by conducting a study of selected dipeptide derivatives with variety in size...... translocated by hPEPT1. hPEPT1 is very susceptible to modifications of the N-terminal amino acid side chain of dipeptidomimetic substrates, in terms of achieving compounds with high affinity for the transporter. However, as affinity is not predictive of translocation, derivatization in this position must...

  10. Wind class sampling of satellite SAR imagery for offshore wind resource mapping

    DEFF Research Database (Denmark)

    Badger, Merete; Badger, Jake; Nielsen, Morten

    2010-01-01

    developed for mesoscale modeling of wind resources. Its performance in connection with sampling of SAR scenes is tested against two sets of random SAR samples and meteorological observations at three sites in the North Sea during 2005–08. Predictions of the mean wind speed and the Weibull scale parameter......High-resolution wind fields retrieved from satellite synthetic aperture radar (SAR) imagery are combined for mapping of wind resources offshore where site measurements are costly and sparse. A new sampling strategy for the SAR scenes is introduced, based on a method for statistical......-dynamical downscaling of large-scale wind conditions using a set of wind classes that describe representative wind situations. One or more SAR scenes are then selected to represent each wind class and the classes are weighted according to their frequency of occurrence. The wind class methodology was originally...

  11. Estimating soil moisture using the Danish polarimetric SAR

    DEFF Research Database (Denmark)

    Jiankang, Ji; Thomsen, A.; Skriver, Henning

    1995-01-01

    The results of applying data from the Danish polarimetric SAR (EMISAR) to estimate soil moisture for bare fields are presented. Fully calibrated C-band SAR images for hh, vv and cross polarizations have been used in this study. The measured surface roughness data showed that classical roughness a...... of surface parameters with the bilinear model, the correlation coefficient between the estimated and measured soil moisture, as well as rms height, is about 0.77. To improve the result, the local incidence angles need to be taken into account......The results of applying data from the Danish polarimetric SAR (EMISAR) to estimate soil moisture for bare fields are presented. Fully calibrated C-band SAR images for hh, vv and cross polarizations have been used in this study. The measured surface roughness data showed that classical roughness...... autocorrelation functions (Gaussian and Exponential) were not able to fit natural surfaces well. A Gauss-Exp hybrid model which agreed better with the measured data has been proposed. Theoretical surface scattering models (POM, IEM), as well as an empirical model for retrieval of soil moisture and surface rms...

  12. Semi-physical Simulation of the Airborne InSAR based on Rigorous Geometric Model and Real Navigation Data

    Science.gov (United States)

    Changyong, Dou; Huadong, Guo; Chunming, Han; yuquan, Liu; Xijuan, Yue; Yinghui, Zhao

    2014-03-01

    Raw signal simulation is a useful tool for the system design, mission planning, processing algorithm testing, and inversion algorithm design of Synthetic Aperture Radar (SAR). Due to the wide and high frequent variation of aircraft's trajectory and attitude, and the low accuracy of the Position and Orientation System (POS)'s recording data, it's difficult to quantitatively study the sensitivity of the key parameters, i.e., the baseline length and inclination, absolute phase and the orientation of the antennas etc., of the airborne Interferometric SAR (InSAR) system, resulting in challenges for its applications. Furthermore, the imprecise estimation of the installation offset between the Global Positioning System (GPS), Inertial Measurement Unit (IMU) and the InSAR antennas compounds the issue. An airborne interferometric SAR (InSAR) simulation based on the rigorous geometric model and real navigation data is proposed in this paper, providing a way for quantitatively studying the key parameters and for evaluating the effect from the parameters on the applications of airborne InSAR, as photogrammetric mapping, high-resolution Digital Elevation Model (DEM) generation, and surface deformation by Differential InSAR technology, etc. The simulation can also provide reference for the optimal design of the InSAR system and the improvement of InSAR data processing technologies such as motion compensation, imaging, image co-registration, and application parameter retrieval, etc.

  13. Semi-physical Simulation of the Airborne InSAR based on Rigorous Geometric Model and Real Navigation Data

    International Nuclear Information System (INIS)

    Changyong, Dou; Huadong, Guo; Chunming, Han; Yuquan, Liu; Xijuan, Yue; Yinghui, Zhao

    2014-01-01

    Raw signal simulation is a useful tool for the system design, mission planning, processing algorithm testing, and inversion algorithm design of Synthetic Aperture Radar (SAR). Due to the wide and high frequent variation of aircraft's trajectory and attitude, and the low accuracy of the Position and Orientation System (POS)'s recording data, it's difficult to quantitatively study the sensitivity of the key parameters, i.e., the baseline length and inclination, absolute phase and the orientation of the antennas etc., of the airborne Interferometric SAR (InSAR) system, resulting in challenges for its applications. Furthermore, the imprecise estimation of the installation offset between the Global Positioning System (GPS), Inertial Measurement Unit (IMU) and the InSAR antennas compounds the issue. An airborne interferometric SAR (InSAR) simulation based on the rigorous geometric model and real navigation data is proposed in this paper, providing a way for quantitatively studying the key parameters and for evaluating the effect from the parameters on the applications of airborne InSAR, as photogrammetric mapping, high-resolution Digital Elevation Model (DEM) generation, and surface deformation by Differential InSAR technology, etc. The simulation can also provide reference for the optimal design of the InSAR system and the improvement of InSAR data processing technologies such as motion compensation, imaging, image co-registration, and application parameter retrieval, etc

  14. 3D Monitoring of Buildings Using TerraSAR-X InSAR, DInSAR and PolSAR Capacities

    Directory of Open Access Journals (Sweden)

    Flora Weissgerber

    2017-09-01

    Full Text Available The rapid expansion of cities increases the need of urban remote sensing for a large scale monitoring. This paper provides greater understanding of how TerraSAR-X (TSX high-resolution abilities enable to reach the spatial precision required to monitor individual buildings, through the use of a 4 year temporal stack of 100 images over Paris (France. Three different SAR modes are investigated for this purpose. First a method involving a whole time-series is proposed to measure realistic heights of buildings. Then, we show that the small wavelength of TSX makes the interferometric products very sensitive to the ordinary building-deformation, and that daily deformation can be measured over the entire building with a centimetric accuracy, and without any a priori on the deformation evolution, even when neglecting the impact of the atmosphere. Deformations up to 4 cm were estimated for the Eiffel Tower and up to 1 cm for other lower buildings. These deformations were analyzed and validated with weather and in situ local data. Finally, four TSX polarimetric images were used to investigate geometric and dielectric properties of buildings under the deterministic framework. Despite of the resolution loss of this mode, the possibility to estimate the structural elements of a building orientations and their relative complexity in the spatial organization are demonstrated.

  15. Genetic variation of the human α-2-Heremans-Schmid glycoprotein (AHSG gene associated with the risk of SARS-CoV infection.

    Directory of Open Access Journals (Sweden)

    Xiaohui Zhu

    Full Text Available Genetic background may play an important role in the process of SARS-CoV infection and SARS development. We found several proteins that could interact with the nucleocapsid protein of the SARS coronavirus (SARS-CoV. α-2-Heremans-Schmid Glycoprotein (AHSG, which is required for macrophage deactivation by endogenous cations, is associated with inflammatory regulation. Cytochrome P450 Family 3A (CYP4F3A is an ω-oxidase that inactivates Leukotriene B4 (LTB4 in human neutrophils and the liver. We investigated the association between the polymorphisms of these two inflammation-associated genes and SARS development. The linkage disequilibrium (LD maps of these two genes were built with Haploview using data on CHB+JPT (version 2 from the HapMap. A total of ten tag SNPs were selected and genotyped. In the Guangzhou cohort study, after adjusting for age and sex, two AHSG SNPs and one CYP4F3 SNP were found to be associated with SARS susceptibility: rs2248690 (adjusted odds ratio [AOR] 2.42; 95% confidence interval [CI] 1.30-4.51; rs4917 (AOR 1.84; 95% CI 1.02-3.34; and rs3794987 (AOR 2.01; 95% CI 1.10-3.68. To further validate the association, the ten tag SNPs were genotyped in the Beijing cohort. After adjusting for age and sex, only rs2248690 (AOR, 1.63; 95% CI, 1.30-2.04 was found to be associated with SARS susceptibility. The combined analysis of the two studies confirmed tag SNP rs2248690 in AHSG as a susceptibility variant (AOR 1.70; 95% CI 1.37-2.09. The statistical analysis of the rs2248690 genotype data among the patients and healthy controls in the HCW cohort, who were all similarly exposed to the SARS virus, also supported the findings. Further, the SNP rs2248690 affected the transcriptional activity of the AHSG promoter and thus regulated the AHSG serum level. Therefore, our study has demonstrated that the AA genotype of rs2268690, which leads to a higher AHSG serum concentration, was significantly associated with protection against SARS

  16. Mapping Regional Inundation with Spaceborne L-Band SAR

    Directory of Open Access Journals (Sweden)

    Bruce Chapman

    2015-04-01

    Full Text Available Shortly after the launch of ALOS PALSAR L-band SAR by the Japan Space Exploration Agency (JAXA, a program to develop an Earth Science Data Record (ESDR for inundated wetlands was funded by NASA. Using established methodologies, extensive multi-temporal L-band ALOS ScanSAR data acquired bi-monthly by the PALSAR instrument onboard ALOS were used to classify the inundation state for South America for delivery as a component of this Inundated Wetlands ESDR (IW-ESDR and in collaboration with JAXA’s ALOS Kyoto and Carbon Initiative science programme. We describe these methodologies and the final classification of the inundation state, then compared this with results derived from dual-season data acquired by the JERS-1 L-band SAR mission in 1995 and 1996, as well as with estimates of surface water extent measured globally every 10 days by coarser resolution sensors. Good correspondence was found when comparing open water extent classified from multi-temporal ALOS ScanSAR data with surface water fraction identified from coarse resolution sensors, except in those regions where there may be differences in sensitivity to widespread and shallow seasonal flooding event, or in areas that could be excluded through use of a continental-scale inundatable mask. It was found that the ALOS ScanSAR classification of inundated vegetation was relatively insensitive to inundated herbaceous vegetation. Inundation dynamics were examined using the multi-temporal ALOS ScanSAR acquisitions over the Pacaya-Samiria and surrounding areas in the Peruvian Amazon.

  17. Identification of novel 2-benzoxazolinone derivatives with specific inhibitory activity against the HIV-1 nucleocapsid protein.

    Science.gov (United States)

    Gamba, Elia; Mori, Mattia; Kovalenko, Lesia; Giannini, Alessia; Sosic, Alice; Saladini, Francesco; Fabris, Dan; Mély, Yves; Gatto, Barbara; Botta, Maurizio

    2018-02-10

    In this report, we present a new benzoxazole derivative endowed with inhibitory activity against the HIV-1 nucleocapsid protein (NC). NC is a 55-residue basic protein with nucleic acid chaperone properties, which has emerged as a novel and potential pharmacological target against HIV-1. In the pursuit of novel NC-inhibitor chemotypes, we performed virtual screening and in vitro biological evaluation of a large library of chemical entities. We found that compounds sharing a benzoxazolinone moiety displayed putative inhibitory properties, which we further investigated by considering a series of chemical analogues. This approach provided valuable information on the structure-activity relationships of these compounds and, in the process, demonstrated that their anti-NC activity could be finely tuned by the addition of specific substituents to the initial benzoxazolinone scaffold. This study represents the starting point for the possible development of a new class of antiretroviral agents targeting the HIV-1 NC protein. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

  18. Intracellular HIV-1 Gag localization is impaired by mutations in the nucleocapsid zinc fingers

    Directory of Open Access Journals (Sweden)

    Muriaux Delphine

    2007-08-01

    Full Text Available Abstract Background The HIV-1 nucleocapsid protein (NC is formed of two CCHC zinc fingers flanked by highly basic regions. HIV-1 NC plays key roles in virus structure and replication via its nucleic acid binding and chaperoning properties. In fact, NC controls proviral DNA synthesis by reverse transcriptase (RT, gRNA dimerization and packaging, and virion assembly. Results We previously reported a role for the first NC zinc finger in virion structure and replication 1. To investigate the role of both NC zinc fingers in intracellular Gag trafficking, and in virion assembly, we generated series of NC zinc fingers mutations. Results show that all Zinc finger mutations have a negative impact on virion biogenesis and maturation and rendered defective the mutant viruses. The NC zinc finger mutations caused an intracellular accumulation of Gag, which was found either diffuse in the cytoplasm or at the plasma membrane but not associated with endosomal membranes as for wild type Gag. Evidences are also provided showing that the intracellular interactions between NC-mutated Gag and the gRNA were impaired. Conclusion These results show that Gag oligomerization mediated by gRNA-NC interactions is required for correct Gag trafficking, and assembly in HIV-1 producing cells and the release of infectious viruses.

  19. Identification of a High Affinity Nucleocapsid Protein Binding Element from The Bovine Leukemia Virus Genome

    Science.gov (United States)

    Yildiz, F. Zehra; Babalola, Kathleen; Summers, Michael F.

    2012-01-01

    Retroviral genome recognition is mediated by interactions between the nucleocapsid (NC) domain of the virally encoded Gag polyprotein and cognate RNA packaging elements that, for most retroviruses, appear to reside primarily within the 5′-untranslated region (5′-UTR) of the genome. Recent studies suggest that a major packaging determinant of Bovine Leukemia Virus (BLV), a member of the human T-cell leukemia virus (HTLV)/BLV family and a non-primate animal model for HTLV-induced leukemogenesis, resides within the gag open reading frame. We have prepared and purified the recombinant BLV NC protein and conducted electrophoretic mobility shift and isothermal titration calorimetry studies with RNA fragments corresponding to these proposed packaging elements. The gag-derived RNAs did not exhibit significant affinity for NC, suggesting an alternate role in packaging. However, an 83-nucleotide fragment of the 5′-UTR that resides just upstream of the gag start codon binds NC stoichiometrically and with high affinity (Kd = 136 ± 21 nM). These nucleotides were predicted to form tandem hairpin structures, and studies with smaller fragments indicate that the NC binding site resides exclusively within the distal hairpin (residues G369- U399, Kd = 67 ± 8 nM at physiological ionic strength). Unlike all other structurally characterized retroviral NC binding RNAs, this fragment is not expected to contain exposed guanosines, suggesting that RNA binding may be mediated by a previously uncharacterized mechanism. PMID:22846919

  20. Selective translation of the measles virus nucleocapsid mRNA by La protein

    Directory of Open Access Journals (Sweden)

    Yoshihisa eInoue

    2011-08-01

    Full Text Available Measles, caused by measles virus (MeV infection, is the leading cause of death in children because of secondary infections attributable to MeV-induced immune suppression. Recently, we have shown that wild-type MeVs induce the suppression of protein synthesis in host cells (referred to as "shutoff" and that viral mRNAs are preferentially translated under shutoff conditions in infected cells. To determine the mechanism behind the preferential translation of viral mRNA, we focused on the 5 untranslated region (UTR of nucleocapsid (N mRNA. The La/SSB autoantigen (La was found to specifically bind to an N-5UTR probe. Recombinant La enhanced the translation of luciferase mRNA containing the N-5UTR (N-fLuc, and RNA interference of La suppressed N-fLuc translation. Furthermore, recombinant MeV lacking the La-binding motif in the N-5UTR displayed delayed viral protein synthesis and growth kinetics at an early phase of infection. These results suggest that La induced predominant translation of N mRNA via binding to its 5UTR under shutoff conditions. This is the first report on a cellular factor that specifically regulates paramyxovirus mRNA translation.

  1. Component tree analysis of cystovirus φ6 nucleocapsid Cryo-EM single particle reconstructions.

    Directory of Open Access Journals (Sweden)

    Lucas M Oliveira

    Full Text Available The 3-dimensional structure of the nucleocapsid (NC of bacteriophage φ6 is described utilizing component tree analysis, a topological and geometric image descriptor. The component trees are derived from density maps of cryo-electron microscopy single particle reconstructions. Analysis determines position and occupancy of structure elements responsible for RNA packaging and transcription. Occupancy of the hexameric nucleotide triphosphorylase (P4 and RNA polymerase (P2 are found to be essentially complete in the NC. The P8 protein lattice likely fixes P4 and P2 in place during maturation. We propose that the viral procapsid (PC is a dynamic structural intermediate where the P4 and P2 can attach and detach until held in place in mature NCs. During packaging, the PC expands to accommodate the RNA, and P2 translates from its original site near the inner 3-fold axis (20 sites to the inner 5-fold axis (12 sites with excess P2 positioned inside the central region of the NC.

  2. Improvement of the Accuracy of InSAR Image Co-Registration Based On Tie Points – A Review

    Directory of Open Access Journals (Sweden)

    Xiaoli Ding

    2009-02-01

    Full Text Available Interferometric Synthetic Aperture Radar (InSAR is a new measurement technology, making use of the phase information contained in the Synthetic Aperture Radar (SAR images. InSAR has been recognized as a potential tool for the generation of digital elevation models (DEMs and the measurement of ground surface deformations. However, many critical factors affect the quality of InSAR data and limit its applications. One of the factors is InSAR data processing, which consists of image co-registration, interferogram generation, phase unwrapping and geocoding. The co-registration of InSAR images is the first step and dramatically influences the accuracy of InSAR products. In this paper, the principle and processing procedures of InSAR techniques are reviewed. One of important factors, tie points, to be considered in the improvement of the accuracy of InSAR image co-registration are emphatically reviewed, such as interval of tie points, extraction of feature points, window size for tie point matching and the measurement for the quality of an interferogram.

  3. SARS and Population Health Technology

    OpenAIRE

    Eysenbach, Gunther

    2003-01-01

    The recent global outbreak of SARS (severe acute respiratory syndrome) provides an opportunity to study the use and impact of public health informatics and population health technology to detect and fight a global epidemic. Population health technology is the umbrella term for technology applications that have a population focus and the potential to improve public health. This includes the Internet, but also other technologies such as wireless devices, mobile phones, smart appliances, or smar...

  4. Analysis of the Effect of Radio Frequency Interference on Repeat Track Airborne InSAR System

    Directory of Open Access Journals (Sweden)

    Ding Bin

    2012-03-01

    Full Text Available The SAR system operating at low frequency is susceptible to Radio Frequency Interference (RFI from television station, radio station, and some other civil electronic facilities. The presence of RFI degrades the SAR image quality, and obscures the targets in the scene. Furthermore, RFI can cause interferometric phase error in repeat track InSAR system. In order to analyze the effect of RFI on interferometric phase of InSAR, real measured RFI signal are added on cone simulated SAR echoes. The imaging and interferometric processing results of both the RFI-contaminated and raw data are given. The effect of real measured RFI signal on repeat track InSAR system is analyzed. Finally, the imaging and interferometric processing results of both with and without RFI suppressed of the P band airborne repeat track InSAR real data are presented, which demonstrates the efficiency of the RFI suppression method in terms of decreasing the interferometric phase errors caused by RFI.

  5. SAR system development for UAV multicopter platforms

    OpenAIRE

    Escartin Martínez, Antonio

    2015-01-01

    SAR system development for UAV multicopter platforms This thesis describes the optimization of a synthetic aperture radar (SAR) at X-band and its integration into an unmanned aerial vehicle (UAV) of type octocopter. For such optimization the SAR system functionality was extended from singlepol to fulpol and it has been optimized at hardware level in order to improve its quality against noise figure. After its integration into the octocopter platform, its features has been used in order to ...

  6. Helmand river hydrologic studies using ALOS PALSAR InSAR and ENVISAT altimetry

    Science.gov (United States)

    Lu, Zhong; Kim, J.-W.; Lee, H.; Shum, C.K.; Duan, J.; Ibaraki, M.; Akyilmaz, O.; Read, C.-H.

    2009-01-01

    The Helmand River wetland represents the only fresh-water resource in southern Afghanistan and one of the least mapped water basins in the world. The relatively narrow wetland consists of mostly marshes surrounded by dry lands. In this study, we demonstrate the use of the Advanced Land Observing Satellite (ALOS) Phased Array type L-band Synthetic Aperture Radar (PALSAR) Interferometric SAR (InSAR) to detect the changes of the Helmand River wetland water level. InSAR images are combined with the geocentric water level measurements from the retracked high-rate (18-Hz) Environmental Satellite (Envisat) radar altimetry to construct absolute water level changes over the marshes. It is demonstrated that the integration of the altimeter and InSAR can provide spatio-temporal measurements of water level variation over the Helmand River marshes where in situ measurements are absent. ?? Taylor & Francis Group, LLC.

  7. Bovine leukemia virus nucleocapsid protein is an efficient nucleic acid chaperone

    International Nuclear Information System (INIS)

    Qualley, Dominic F.; Sokolove, Victoria L.; Ross, James L.

    2015-01-01

    Nucleocapsid proteins (NCs) direct the rearrangement of nucleic acids to form the most thermodynamically stable structure, and facilitate many steps throughout the life cycle of retroviruses. NCs bind strongly to nucleic acids (NAs) and promote NA aggregation by virtue of their cationic nature; they also destabilize the NA duplex via highly structured zinc-binding motifs. Thus, they are considered to be NA chaperones. While most retroviral NCs are structurally similar, differences are observed both within and between retroviral genera. In this work, we compare the NA binding and chaperone activity of bovine leukemia virus (BLV) NC to that of two other retroviral NCs: human immunodeficiency virus type 1 (HIV-1) NC, which is structurally similar to BLV NC but from a different retrovirus genus, and human T-cell leukemia virus type 1 (HTLV-1) NC, which possesses several key structural differences from BLV NC but is from the same genus. Our data show that BLV and HIV-1 NCs bind to NAs with stronger affinity in relation to HTLV-1 NC, and that they also accelerate the annealing of complementary stem-loop structures to a greater extent. Analysis of kinetic parameters derived from the annealing data suggests that while all three NCs stimulate annealing by a two-step mechanism as previously reported, the relative contributions of each step to the overall annealing equilibrium are conserved between BLV and HIV-1 NCs but are different for HTLV-1 NC. It is concluded that while BLV and HTLV-1 belong to the same genus of retroviruses, processes that rely on NC may not be directly comparable. - Highlights: • BLV NC binds strongly to DNA and RNA. • BLV NC promotes mini-TAR annealing as well as HIV-1 NC. • Annealing kinetics suggest a low degree of similarity between BLV NC and HTLV-1 NC

  8. TGEV nucleocapsid protein induces cell cycle arrest and apoptosis through activation of p53 signaling

    International Nuclear Information System (INIS)

    Ding, Li; Huang, Yong; Du, Qian; Dong, Feng; Zhao, Xiaomin; Zhang, Wenlong; Xu, Xingang; Tong, Dewen

    2014-01-01

    Highlights: • TGEV N protein reduces cell viability by inducing cell cycle arrest and apoptosis. • TGEV N protein induces cell cycle arrest and apoptosis by regulating p53 signaling. • TGEV N protein plays important roles in TGEV-induced cell cycle arrest and apoptosis. - Abstract: Our previous studies showed that TGEV infection could induce cell cycle arrest and apoptosis via activation of p53 signaling in cultured host cells. However, it is unclear which viral gene causes these effects. In this study, we investigated the effects of TGEV nucleocapsid (N) protein on PK-15 cells. We found that TGEV N protein suppressed cell proliferation by causing cell cycle arrest at the S and G2/M phases and apoptosis. Characterization of various cellular proteins that are involved in regulating cell cycle progression demonstrated that the expression of N gene resulted in an accumulation of p53 and p21, which suppressed cyclin B1, cdc2 and cdk2 expression. Moreover, the expression of TGEV N gene promoted translocation of Bax to mitochondria, which in turn caused the release of cytochrome c, followed by activation of caspase-3, resulting in cell apoptosis in the transfected PK-15 cells following cell cycle arrest. Further studies showed that p53 inhibitor attenuated TGEV N protein induced cell cycle arrest at S and G2/M phases and apoptosis through reversing the expression changes of cdc2, cdk2 and cyclin B1 and the translocation changes of Bax and cytochrome c induced by TGEV N protein. Taken together, these results demonstrated that TGEV N protein might play an important role in TGEV infection-induced p53 activation and cell cycle arrest at the S and G2/M phases and apoptosis occurrence

  9. Bovine leukemia virus nucleocapsid protein is an efficient nucleic acid chaperone

    Energy Technology Data Exchange (ETDEWEB)

    Qualley, Dominic F., E-mail: dqualley@berry.edu; Sokolove, Victoria L.; Ross, James L.

    2015-03-13

    Nucleocapsid proteins (NCs) direct the rearrangement of nucleic acids to form the most thermodynamically stable structure, and facilitate many steps throughout the life cycle of retroviruses. NCs bind strongly to nucleic acids (NAs) and promote NA aggregation by virtue of their cationic nature; they also destabilize the NA duplex via highly structured zinc-binding motifs. Thus, they are considered to be NA chaperones. While most retroviral NCs are structurally similar, differences are observed both within and between retroviral genera. In this work, we compare the NA binding and chaperone activity of bovine leukemia virus (BLV) NC to that of two other retroviral NCs: human immunodeficiency virus type 1 (HIV-1) NC, which is structurally similar to BLV NC but from a different retrovirus genus, and human T-cell leukemia virus type 1 (HTLV-1) NC, which possesses several key structural differences from BLV NC but is from the same genus. Our data show that BLV and HIV-1 NCs bind to NAs with stronger affinity in relation to HTLV-1 NC, and that they also accelerate the annealing of complementary stem-loop structures to a greater extent. Analysis of kinetic parameters derived from the annealing data suggests that while all three NCs stimulate annealing by a two-step mechanism as previously reported, the relative contributions of each step to the overall annealing equilibrium are conserved between BLV and HIV-1 NCs but are different for HTLV-1 NC. It is concluded that while BLV and HTLV-1 belong to the same genus of retroviruses, processes that rely on NC may not be directly comparable. - Highlights: • BLV NC binds strongly to DNA and RNA. • BLV NC promotes mini-TAR annealing as well as HIV-1 NC. • Annealing kinetics suggest a low degree of similarity between BLV NC and HTLV-1 NC.

  10. Estimation of forest aboveground biomass and uncertainties by integration of field measurements, airborne LiDAR, and SAR and optical satellite data in Mexico.

    Science.gov (United States)

    Urbazaev, Mikhail; Thiel, Christian; Cremer, Felix; Dubayah, Ralph; Migliavacca, Mirco; Reichstein, Markus; Schmullius, Christiane

    2018-02-21

    Information on the spatial distribution of aboveground biomass (AGB) over large areas is needed for understanding and managing processes involved in the carbon cycle and supporting international policies for climate change mitigation and adaption. Furthermore, these products provide important baseline data for the development of sustainable management strategies to local stakeholders. The use of remote sensing data can provide spatially explicit information of AGB from local to global scales. In this study, we mapped national Mexican forest AGB using satellite remote sensing data and a machine learning approach. We modelled AGB using two scenarios: (1) extensive national forest inventory (NFI), and (2) airborne Light Detection and Ranging (LiDAR) as reference data. Finally, we propagated uncertainties from field measurements to LiDAR-derived AGB and to the national wall-to-wall forest AGB map. The estimated AGB maps (NFI- and LiDAR-calibrated) showed similar goodness-of-fit statistics (R 2 , Root Mean Square Error (RMSE)) at three different scales compared to the independent validation data set. We observed different spatial patterns of AGB in tropical dense forests, where no or limited number of NFI data were available, with higher AGB values in the LiDAR-calibrated map. We estimated much higher uncertainties in the AGB maps based on two-stage up-scaling method (i.e., from field measurements to LiDAR and from LiDAR-based estimates to satellite imagery) compared to the traditional field to satellite up-scaling. By removing LiDAR-based AGB pixels with high uncertainties, it was possible to estimate national forest AGB with similar uncertainties as calibrated with NFI data only. Since LiDAR data can be acquired much faster and for much larger areas compared to field inventory data, LiDAR is attractive for repetitive large scale AGB mapping. In this study, we showed that two-stage up-scaling methods for AGB estimation over large areas need to be analyzed and validated

  11. Applications of interferometrically derived terrain slopes: Normalization of SAR backscatter and the interferometric correlation coefficient

    Science.gov (United States)

    Werner, Charles L.; Wegmueller, Urs; Small, David L.; Rosen, Paul A.

    1994-01-01

    Terrain slopes, which can be measured with Synthetic Aperture Radar (SAR) interferometry either from a height map or from the interferometric phase gradient, were used to calculate the local incidence angle and the correct pixel area. Both are required for correct thematic interpretation of SAR data. The interferometric correlation depends on the pixel area projected on a plane perpendicular to the look vector and requires correction for slope effects. Methods for normalization of the backscatter and interferometric correlation for ERS-1 SAR are presented.

  12. Enrichment of measles virus-like RNA in the nucleocapsid fraction isolated from subacute sclerosing panencephalitis brains

    Energy Technology Data Exchange (ETDEWEB)

    Bedows, E; Payne, F E [Michigan Univ., Ann Arbor (USA). School of Public Health; Kohne, D E [Center for Neurologic Study, San Diego, CA, USA; Tourtellotte, W W [Neurology Service, V.A. Wadsworth Hospital Center, Los Angeles, CA, USA

    1982-02-01

    A procedure has been developed which facilitates the detection of measles virus RNA sequences in human brains. The procedure involves isolating subviral components (nucleocapsids) from brain tissues prior to RNA purification, followed by hybridization of these RNAs to cDNA synthesized from measles virus 50 S RNA template. Using these techniques we were able to obtain an RNA fraction which was manyfold enriched in measles virus-specific RNA, relative to unfractionated subacute sclerosing panencephalitis (SSPE) brain RNAs. 70-100% of the measles virus-specific RNA present in these SSPE brain samples were recovered in this enriched fraction.

  13. Enrichment of measles virus-like RNA in the nucleocapsid fraction isolated from subacute sclerosing panencephalitis brains

    International Nuclear Information System (INIS)

    Bedows, E.; Payne, F.E.; Kohne, D.E.; Tourtellotte, W.W.

    1982-01-01

    A procedure has been developed which facilitates the detection of measles virus RNA sequences in human brains. The procedure involves isolating subviral components (nucleocapsids) from brain tissues prior to RNA purification, followed by hybridization of these RNAs to cDNA synthesized from measles virus 50 S RNA template. Using these techniques we were able to obtain an RNA fraction which was manyfold enriched in measles virus-specific RNA, relative to unfractionated subacute sclerosing panencephalitis (SSPE) brain RNAs. 70-100% of the measles virus-specific RNA present in these SSPE brain samples were recovered in this enriched fraction. (Auth.)

  14. Evidence of rock slope breathing using ground-based InSAR

    Science.gov (United States)

    Rouyet, Line; Kristensen, Lene; Derron, Marc-Henri; Michoud, Clément; Blikra, Lars Harald; Jaboyedoff, Michel; Lauknes, Tom Rune

    2017-07-01

    Ground-Based Interferometric Synthetic Aperture Radar (GB-InSAR) campaigns were performed in summer 2011 and 2012 in the Romsdalen valley (Møre & Romsdal county, western Norway) in order to assess displacements on Mannen/Børa rock slope. Located 1 km northwest, a second GB-InSAR system continuously monitors the large Mannen rockslide. The availability of two GB-InSAR positions creates a wide coverage of the rock slope, including a slight dataset overlap valuable for validation. A phenomenon of rock slope breathing is detected in a remote and hard-to-access area in mid-slope. Millimetric upward displacements are recorded in August 2011. Analysis of 2012 GB-InSAR campaign, combined with the large dataset from the continuous station, shows that the slope is affected by inflation/deflation phenomenon between 5 and 10 mm along the line-of-sight. The pattern is not homogenous in time and inversions of movement have a seasonal recurrence. These seasonal changes are confirmed by satellite InSAR observations and can possibly be caused by hydrogeological variations. In addition, combination of GB-InSAR results, in situ measurements and satellite InSAR analyses contributes to a better overview of movement distribution over the whole area.

  15. First Image Products from EcoSAR - Osa Peninsula, Costa Rica

    Science.gov (United States)

    Osmanoglu, Batuhan; Lee, SeungKuk; Rincon, Rafael; Fatuyinbo, Lola; Bollian, Tobias; Ranson, Jon

    2016-01-01

    Designed especially for forest ecosystem studies, EcoSAR employs state-of-the-art digital beamforming technology to generate wide-swath, high-resolution imagery. EcoSARs dual antenna single-pass imaging capability eliminates temporal decorrelation from polarimetric and interferometric analysis, increasing the signal strength and simplifying models used to invert forest structure parameters. Antennae are physically separated by 25 meters providing single pass interferometry. In this mode the radar is most sensitive to topography. With 32 active transmit and receive channels, EcoSARs digital beamforming is an order of magnitude more versatile than the digital beamforming employed on the upcoming NISAR mission. EcoSARs long wavelength (P-band, 435 MHz, 69 cm) measurements can be used to simulate data products for ESAs future BIOMASS mission, allowing scientists to develop algorithms before the launch of the satellite. EcoSAR can also be deployed to collect much needed data where BIOMASS satellite wont be allowed to collect data (North America, Europe and Arctic), filling in the gaps to keep a watchful eye on the global carbon cycle. EcoSAR can play a vital role in monitoring, reporting and verification schemes of internationals programs such as UN-REDD (United Nations Reducing Emissions from Deforestation and Degradation) benefiting global society. EcoSAR was developed and flown with support from NASA Earth Sciences Technology Offices Instrument Incubator Program.

  16. Parental influenza virion nucleocapsids are efficiently transported into the nuclei of murine cells expressing the nuclear interferon-induced Mx protein.

    Science.gov (United States)

    Broni, B; Julkunen, I; Condra, J H; Davies, M E; Berry, M J; Krug, R M

    1990-12-01

    The interferon-induced murine Mx1 protein, which is localized in the nucleus, most likely specifically blocks influenza virus replication by inhibiting nuclear viral mRNA synthesis, including the mRNA synthesis catalyzed by inoculum (parental) virion nucleocapsids (R. M. Krug, M. Shaw, B. Broni, G. Shapiro, and O. Haller, J. Virol. 56:201-206, 1985). We tested two possible mechanisms for this inhibition. First, we determined whether the transport of parental nucleocapsids into the nucleus was inhibited in murine cells expressing the nuclear Mx1 protein. To detect the Mx1 protein, we prepared rabbit antibodies against the Mx1 protein with a CheY-Mx fusion protein expressed in bacteria. The fate of parental nucleocapsids was monitored by immunofluorescence with an appropriate dilution of monoclonal antibody to the nucleocapsid protein. The protein synthesis inhibitor anisomycin was added to the cells 30 min prior to infection, so that the only nucleocapsids protein molecules in the cells were those associated with nucleocapsids of the parental virus. These nucleocapsids were efficiently transported into the nuclei of murine cells expressing the Mx1 protein, indicating that this protein most likely acts after the parental nucleocapsids enter the nucleus. The second possibility was that the murine Mx1 protein might act in the nucleus to inhibit viral mRNA synthesis indirectly via new cap-binding activities that sequestered cellular capped RNAs away from the viral RNA transcriptase. We show that the same array of nuclear cap-binding proteins was present in Mx-positive and Mx-negative cells treated with interferon. Interestingly, a large amount of a 43-kDa cap-binding activity appeared after interferon treatment of both Mx-positive and Mx-negative cells. Hence, the appearance of new cap-binding activities was unlikely to account for the Mx-specific inhibition of viral mRNA synthesis. These results are most consistent with the possibility that the Mx1 protein acts

  17. Identifying SARS-CoV membrane protein amino acid residues linked to virus-like particle assembly.

    Directory of Open Access Journals (Sweden)

    Ying-Tzu Tseng

    Full Text Available Severe acute respiratory syndrome coronavirus (SARS-CoV membrane (M proteins are capable of self-assembly and release in the form of membrane-enveloped vesicles, and of forming virus-like particles (VLPs when coexpressed with SARS-CoV nucleocapsid (N protein. According to previous deletion analyses, M self-assembly involves multiple M sequence regions. To identify important M amino acid residues for VLP assembly, we coexpressed N with multiple M mutants containing substitution mutations at the amino-terminal ectodomain, carboxyl-terminal endodomain, or transmembrane segments. Our results indicate that a dileucine motif in the endodomain tail (218LL219 is required for efficient N packaging into VLPs. Results from cross-linking VLP analyses suggest that the cysteine residues 63, 85 and 158 are not in close proximity to the M dimer interface. We noted a significant reduction in M secretion due to serine replacement for C158, but not for C63 or C85. Further analysis suggests that C158 is involved in M-N interaction. In addition to mutations of the highly conserved 107-SWWSFNPE-114 motif, substitutions at codons W19, W57, P58, W91, Y94 or F95 all resulted in significantly reduced VLP yields, largely due to defective M secretion. VLP production was not significantly affected by a tryptophan replacement of Y94 or F95 or a phenylalanine replacement of W19, W57 or W91. Combined, these results indicate the involvement of specific M amino acids during SARS-CoV virus assembly, and suggest that aromatic residue retention at specific positions is critical for M function in terms of directing virus assembly.

  18. The lessons of SARS in Hong Kong.

    Science.gov (United States)

    Lai, Thomas Sik To; Yu, Wai Cho

    2010-02-01

    Severe acute respiratory syndrome (SARS) is a novel coronavirus infection which broke out in Hong Kong in March 2003. Princess Margaret Hospital was designated to manage this new, mysterious and serious disease. Healthcare workers had to work under extremely stressful and often risky conditions to care for patients. Despite manpower and equipment reinforcements, staff infection occurred as a result of bodily exhaustion, working in an unfamiliar environment and lapses in infection control. Patients suffered even more, not only due to physical discomfort, but also because of the fear of isolation and death away from family and friends. Health authorities learnt their lessons in the outbreak and formulated emergency plans for future infectious disease epidemics. The healthcare infrastructure has been examined and upgraded with regard to intensive care capacity, infection control measures, professional training, manpower deployment, staff facilities, and stockpiling of drugs and personal protective equipment.

  19. Osservazione dei fenomeni deformativi nel centro di Roma. Dall'applicazione di tecniche avanzate DInSAR, all'analisi qualitativa della natura del rumore dei dati COSMO Sky-Med

    OpenAIRE

    Massimo Morigi

    2015-01-01

    This work was created to focus the attention on a particular aspect of theequivocation (aliasing) of the measurements made with Differential SAR interferometry (DInSAR) X-band for the presence of snow. Such equivocationemerge after a careful interpretation of the results obtained through theapplication of techniques Advanced DInSAR (A-DInSAR) for the observation ofthe deformation phenomena of the monumental structures in the center ofRome. The qualitative analysis have enabled the identificat...

  20. Mapping ground surface deformation using temporarily coherent point SAR interferometry: Application to Los Angeles Basin

    Science.gov (United States)

    Zhang, L.; Lu, Zhong; Ding, X.; Jung, H.-S.; Feng, G.; Lee, C.-W.

    2012-01-01

    Multi-temporal interferometric synthetic aperture radar (InSAR) is an effective tool to detect long-term seismotectonic motions by reducing the atmospheric artifacts, thereby providing more precise deformation signal. The commonly used approaches such as persistent scatterer InSAR (PSInSAR) and small baseline subset (SBAS) algorithms need to resolve the phase ambiguities in interferogram stacks either by searching a predefined solution space or by sparse phase unwrapping methods; however the efficiency and the success of phase unwrapping cannot be guaranteed. We present here an alternative approach – temporarily coherent point (TCP) InSAR (TCPInSAR) – to estimate the long term deformation rate without the need of phase unwrapping. The proposed approach has a series of innovations including TCP identification, TCP network and TCP least squares estimator. We apply the proposed method to the Los Angeles Basin in southern California where structurally active faults are believed capable of generating damaging earthquakes. The analysis is based on 55 interferograms from 32 ERS-1/2 images acquired during Oct. 1995 and Dec. 2000. To evaluate the performance of TCPInSAR on a small set of observations, a test with half of interferometric pairs is also performed. The retrieved TCPInSAR measurements have been validated by a comparison with GPS observations from Southern California Integrated GPS Network. Our result presents a similar deformation pattern as shown in past InSAR studies but with a smaller average standard deviation (4.6 mm) compared with GPS observations, indicating that TCPInSAR is a promising alternative for efficiently mapping ground deformation even from a relatively smaller set of interferograms.

  1. Detectability Analysis of Road Vehicles in Radarsat-2 Fully Polarimetric SAR Images for Traffic Monitoring

    Directory of Open Access Journals (Sweden)

    Bo Zhang

    2017-02-01

    Full Text Available By acquiring information over a wide area regardless of weather conditions and solar illumination, space-borne Synthetic Aperture Radar (SAR has the potential to be a promising application for traffic monitoring. However, the backscatter character of a vehicle in a SAR image is unstable and varies with image parameters, such as aspect and incidence angle. To investigate vehicle detectability in SAR images for traffic monitoring applications, images of four common types of vehicles in China were acquired using the fully polarimetric (FP SAR of Radarsat-2 in our experiments. Methods for measuring a vehicle’s aspect angle and backscatter intensity are introduced. The experimental FP SAR images are used to analyze the detectability, which is affected by factors such as vehicle size, vehicle shape, and aspect angle. Moreover, a new metric to improve vehicle detectability in FP SAR images is proposed and compared with the well-known intensity metric. The experimental results show that shape is a crucial factor in affecting the backscatter intensity of vehicles, which also oscillates with varying aspect angle. If the size of a vehicle is smaller than the SAR image resolution, using the intensity metric would result in low detectability. However, it could be improved in an FP SAR image by using the proposed metric. Compared with the intensity metric, the overall detectability is improved from 72% to 90% in our experiments. Therefore, this study indicates that FP SAR images have the ability to detect stationary vehicles on the road and are meaningful for traffic monitoring.

  2. Population-based Post-crisis Psychological Distress: An Example From the SARS Outbreak in Taiwan

    Science.gov (United States)

    Peng, Eugene Yu-Chang; Lee, Ming-Been; Tsai, Shang-Ta; Yang, Chih-Chien; Morisky, Donald Edward; Tsai, Liang-Ting; Weng, Ya-Ling; Lyu, Shu-Yu

    2011-01-01

    Background/Purpose As a result of the severe acute respiratory syndrome (SARS) pandemic, the World Health Organization placed Taiwan on the travel alert list from May 21 to July 5, 2003. The aim of this study was to explore the post-crisis psychological distress among residents in Taiwan after the SARS epidemic. Methods The target population consisted of a nationwide representative sample of residents aged ≥ 18 years. Data were collected using computer assisted telephone interview systems by stratified random sampling according to geographic area. The survey (n = 1278) was conducted in November 2003, about 4 months after resolution of the SARS crisis in Taiwan. The maximum deviation of sampling error at the 95% confidence level was ± 2.74%. Psychological distress was measured by a question related to subject’s changes in perception of life, plus the five-item Brief Symptom Rating Scale. Multivariate logistic regression was used to examine the correlation of psychological distress. Results About 9.2% of the participants reported that their perceptions of life became more pessimistic following the SARS crisis. The prevalence of psychiatric morbidity was 11.7%. Major predictors of higher levels of pessimism after the SARS epidemic included demographic factors, perception of SARS and pre-paredness, knowing people or having personal experiences of SARS-related discrimination, and individual worries and psychiatric morbidity. The correlates of symptomatic cases, as indicated by the five-item Brief Symptom Rating Scale, included age ≥ 50 years, senior high school graduate, and worries about recurrence of SARS. Conclusion Psychological distress was significantly correlated with demographic factors and perception regarding the SARS epidemic. It is suggested that marketing of mental health education should be segmented according to age and education level, which should enhance crisis communication for newly emerging infectious diseases among community populations

  3. Geometric calibration of ERS satellite SAR images

    DEFF Research Database (Denmark)

    Mohr, Johan Jacob; Madsen, Søren Nørvang

    2001-01-01

    Geometric calibration of the European Remote Sensing (ERS) Satellite synthetic aperture radar (SAR) slant range images is important in relation to mapping areas without ground reference points and also in relation to automated processing. The relevant SAR system parameters are discussed...

  4. PHARUS: A C-band Airborne SAR

    NARCIS (Netherlands)

    Hoogeboom, P.; Koomen, P.J.; Pouwels, H.; Snoeij, P.

    1990-01-01

    In The Netherlands a plan to design aircraft and build a polarimetric C-band SAR system of a novel design, called PHARUS (PHased Array Universal SAR) is carried out by three institutes. These institutes are the Physics and Electronics Laboratory TNO in The Hague (prime contractor and project

  5. SARS – Koch´Postulates proved.

    Indian Academy of Sciences (India)

    SARS – Koch´Postulates proved. Novel coronavirus identified from fluids of patients. Virus cultured in Vero cell line. Sera of patients have antibodies to virus. Cultured virus produces disease in Macaque monkeys. -produces specific immune response; -isolated virus is SARS CoV; -pathology similar to human.

  6. A simple sandwich ELISA (WELYSSA) for the detection of lyssavirus nucleocapsid in rabies suspected specimens using mouse monoclonal antibodies.

    Science.gov (United States)

    Xu, Gelin; Weber, Patrick; Hu, Qiaoling; Xue, Honggang; Audry, Laurent; Li, Chengping; Wu, Jie; Bourhy, Herve

    2007-10-01

    Monoclonal antibody (MAb)-based capture enzyme-linked immunosorbent assays (ELISA) were developed for the diagnosis of rabies-suspect specimens. A combination of four mouse monoclonal antibodies directed against the rabies virus nucleocapsid was selected and used for the detection. The test was optimized and standardized so that maximum concordance could be maintained with the standard procedures of rabies diagnosis recommended by the WHO expert committee. Using prototype viruses from the different genotypes of lyssavirus and from various geographic origins and phylogenetic lineages, this paper presents a reliable, rapid and transferable diagnostic method, named WELYSSA that readily permits the detection of lyssaviruses belonging to the 7 genotypes of lyssavirus circulating in Europe, Africa, Asia and Oceania. The threshold of detection of lyssavirus nucleocapsids is low (0.8 ng/ml). With a panel of 1030 specimens received for rabies diagnostic testing, this test was found to be highly specific (0.999) and sensitive (0.970) when compared to other recommended rabies diagnostic methods.

  7. Mass Spectrometry Analysis Coupled with de novo Sequencing Reveals Amino Acid Substitutions in Nucleocapsid Protein from Influenza A Virus

    Directory of Open Access Journals (Sweden)

    Zijian Li

    2014-02-01

    Full Text Available Amino acid substitutions in influenza A virus are the main reasons for both antigenic shift and virulence change, which result from non-synonymous mutations in the viral genome. Nucleocapsid protein (NP, one of the major structural proteins of influenza virus, is responsible for regulation of viral RNA synthesis and replication. In this report we used LC-MS/MS to analyze tryptic digestion of nucleocapsid protein of influenza virus (A/Puerto Rico/8/1934 H1N1, which was isolated and purified by SDS poly-acrylamide gel electrophoresis. Thus, LC-MS/MS analyses, coupled with manual de novo sequencing, allowed the determination of three substituted amino acid residues R452K, T423A and N430T in two tryptic peptides. The obtained results provided experimental evidence that amino acid substitutions resulted from non-synonymous gene mutations could be directly characterized by mass spectrometry in proteins of RNA viruses such as influenza A virus.

  8. Deep learning for SAR image formation

    Science.gov (United States)

    Mason, Eric; Yonel, Bariscan; Yazici, Birsen

    2017-04-01

    The recent success of deep learning has lead to growing interest in applying these methods to signal processing problems. This paper explores the applications of deep learning to synthetic aperture radar (SAR) image formation. We review deep learning from a perspective relevant to SAR image formation. Our objective is to address SAR image formation in the presence of uncertainties in the SAR forward model. We present a recurrent auto-encoder network architecture based on the iterative shrinkage thresholding algorithm (ISTA) that incorporates SAR modeling. We then present an off-line training method using stochastic gradient descent and discuss the challenges and key steps of learning. Lastly, we show experimentally that our method can be used to form focused images in the presence of phase uncertainties. We demonstrate that the resulting algorithm has faster convergence and decreased reconstruction error than that of ISTA.

  9. SARS: systematic review of treatment effects.

    Directory of Open Access Journals (Sweden)

    Lauren J Stockman

    2006-09-01

    Full Text Available BACKGROUND: The SARS outbreak of 2002-2003 presented clinicians with a new, life-threatening disease for which they had no experience in treating and no research on the effectiveness of treatment options. The World Health Organization (WHO expert panel on SARS treatment requested a systematic review and comprehensive summary of treatments used for SARS-infected patients in order to guide future treatment and identify priorities for research. METHODS AND FINDINGS: In response to the WHO request we conducted a systematic review of the published literature on ribavirin, corticosteroids, lopinavir and ritonavir (LPV/r, type I interferon (IFN, intravenous immunoglobulin (IVIG, and SARS convalescent plasma from both in vitro studies and in SARS patients. We also searched for clinical trial evidence of treatment for acute respiratory distress syndrome. Sources of data were the literature databases MEDLINE, EMBASE, BIOSIS, and the Cochrane Central Register of Controlled Trials (CENTRAL up to February 2005. Data from publications were extracted and evidence within studies was classified using predefined criteria. In total, 54 SARS treatment studies, 15 in vitro studies, and three acute respiratory distress syndrome studies met our inclusion criteria. Within in vitro studies, ribavirin, lopinavir, and type I IFN showed inhibition of SARS-CoV in tissue culture. In SARS-infected patient reports on ribavirin, 26 studies were classified as inconclusive, and four showed possible harm. Seven studies of convalescent plasma or IVIG, three of IFN type I, and two of LPV/r were inconclusive. In 29 studies of steroid use, 25 were inconclusive and four were classified as causing possible harm. CONCLUSIONS: Despite an extensive literature reporting on SARS treatments, it was not possible to determine whether treatments benefited patients during the SARS outbreak. Some may have been harmful. Clinical trials should be designed to validate a standard protocol for dosage

  10. SARS and population health technology.

    Science.gov (United States)

    Eysenbach, Gunther

    2003-01-01

    The recent global outbreak of SARS (severe acute respiratory syndrome) provides an opportunity to study the use and impact of public health informatics and population health technology to detect and fight a global epidemic. Population health technology is the umbrella term for technology applications that have a population focus and the potential to improve public health. This includes the Internet, but also other technologies such as wireless devices, mobile phones, smart appliances, or smart homes. In the context of an outbreak or bioterrorism attack, such technologies may help to gather intelligence and detect diseases early, and communicate and exchange information electronically worldwide. Some of the technologies brought forward during the SARS epidemic may have been primarily motivated by marketing efforts, or were more directed towards reassuring people that "something is being done," ie, fighting an "epidemic of fear." To understand "fear epidemiology" is important because early warning systems monitoring data from a large number of people may not be able to discriminate between a biological epidemic and an epidemic of fear. The need for critical evaluation of all of these technologies is stressed.

  11. Crimean-Congo Hemorrhagic Fever Virus Nucleocapsid Protein Augments mRNA Translation.

    Science.gov (United States)

    Jeeva, Subbiah; Cheng, Erdong; Ganaie, Safder S; Mir, Mohammad A

    2017-08-01

    Crimean-Congo hemorrhagic fever virus (CCHFV) is a tick-borne Nairovirus of the Bunyaviridae family, causing severe illness with high mortality rates in humans. Here, we demonstrate that CCHFV nucleocapsid protein (CCHFV-NP) augments mRNA translation. CCHFV-NP binds to the viral mRNA 5' untranslated region (UTR) with high affinity. It facilitates the translation of reporter mRNA both in vivo and in vitro with the assistance of the viral mRNA 5' UTR. CCHFV-NP equally favors the translation of both capped and uncapped mRNAs, demonstrating the independence of this translation strategy on the 5' cap. Unlike the canonical host translation machinery, inhibition of eIF4F complex, an amalgam of three initiation factors, eIF4A, eIF4G, and eIF4E, by the chemical inhibitor 4E1RCat did not impact the CCHFV-NP-mediated translation mechanism. However, the proteolytic degradation of eIF4G alone by the human rhinovirus 2A protease abrogated this translation strategy. Our results demonstrate that eIF4F complex formation is not required but eIF4G plays a critical role in this translation mechanism. Our results suggest that CCHFV has adopted a unique translation mechanism to facilitate the translation of viral mRNAs in the host cell cytoplasm where cellular transcripts are competing for the same translation apparatus. IMPORTANCE Crimean-Congo hemorrhagic fever, a highly contagious viral disease endemic to more than 30 countries, has limited treatment options. Our results demonstrate that NP favors the translation of a reporter mRNA harboring the viral mRNA 5' UTR. It is highly likely that CCHFV uses an NP-mediated translation strategy for the rapid synthesis of viral proteins during the course of infection. Shutdown of this translation mechanism might selectively impact viral protein synthesis, suggesting that an NP-mediated translation strategy is a target for therapeutic intervention against this viral disease. Copyright © 2017 American Society for Microbiology.

  12. The Unstructured Paramyxovirus Nucleocapsid Protein Tail Domain Modulates Viral Pathogenesis through Regulation of Transcriptase Activity.

    Science.gov (United States)

    Thakkar, Vidhi D; Cox, Robert M; Sawatsky, Bevan; da Fontoura Budaszewski, Renata; Sourimant, Julien; Wabbel, Katrin; Makhsous, Negar; Greninger, Alexander L; von Messling, Veronika; Plemper, Richard K

    2018-04-15

    The paramyxovirus replication machinery comprises the viral large (L) protein and phosphoprotein (P-protein) in addition to the nucleocapsid (N) protein, which encapsidates the single-stranded RNA genome. Common to paramyxovirus N proteins is a C-terminal tail (Ntail). The mechanistic role and relevance for virus replication of the structurally disordered central Ntail section are unknown. Focusing initially on members of the Morbillivirus genus, a series of measles virus (MeV) and canine distemper virus (CDV) N proteins were generated with internal deletions in the unstructured tail section. N proteins with large tail truncations remained bioactive in mono- and polycistronic minireplicon assays and supported efficient replication of recombinant viruses. Bioactivity of Ntail mutants extended to N proteins derived from highly pathogenic Nipah virus. To probe an effect of Ntail truncations on viral pathogenesis, recombinant CDVs were analyzed in a lethal CDV/ferret model of morbillivirus disease. The recombinant viruses displayed different stages of attenuation ranging from ameliorated clinical symptoms to complete survival of infected animals, depending on the molecular nature of the Ntail truncation. Reinfection of surviving animals with pathogenic CDV revealed robust protection against a lethal challenge. The highly attenuated virus was genetically stable after ex vivo passaging and recovery from infected animals. Mechanistically, gradual viral attenuation coincided with stepwise altered viral transcriptase activity in infected cells. These results identify the central Ntail section as a determinant for viral pathogenesis and establish a novel platform to engineer gradual virus attenuation for next-generation paramyxovirus vaccine design. IMPORTANCE Investigating the role of the paramyxovirus N protein tail domain (Ntail) in virus replication, we demonstrated in this study that the structurally disordered central Ntail region is a determinant for viral

  13. [Epidemiological perspectives on SARS and avian influenza].

    Science.gov (United States)

    del Rey Calero, Juan

    2004-01-01

    SARS is a respiratory infection caused by Coronavirus (Nidoviruses, RNA) from which 3 groups are known. Group 1 affects dogs, cats, pigs, and the human agent is 229 E. Group 2 affects bovines or rodents, and the human agent is OC43. And group 3 corresponds to the avian pathology.... The epidemics emerged on February 2003 in Guangdong, South China, due to consumption of exotic animals (Civeta, etc.), and it spread through interperson contagion to other regions in Asia, America and Europe. Incubation period is about 2-7 days. Transmission Of the virus is person-to person, but also by excretions and residual water. Basic reproductive rate is 2 to 4, and it is considered that 2.7 persons are infected from the initial case. In June 2003, SARS affected over 8,000 people and 774 were killed. Mortality approaches to 10%, and it is higher among older people rising up to 50% in those aged over 65 years. It is important to quickly establish action protocols regarding clinical, epidemiological and prevention aspects. Avian influenza is an infection caused by type A Influenza Orthomixovirus, in which migration birds and wild ducks are the main reservoir. Avian viruses correspond to H5, H7, H9. In 1997 it was observed that type AH5N1 jumped interspecies barrier and affected 18 humans, and 6 of them died. At the end of 2003 and in 2004 this type of poultry flu was described in Asia. FAO has emphasized that sacrifice of chicken in affected farms is the most effective measure to fight against the disease. It has also been established suppression of imports from these countries. There is no evidence on interperson contagion from chicken contagion, nor on food-borne contagion to humans.

  14. Initial assessment of an airborne Ku-band polarimetric SAR.

    Energy Technology Data Exchange (ETDEWEB)

    Raynal, Ann Marie; Doerry, Armin Walter

    2013-02-01

    Polarimetric synthetic aperture radar (SAR) has been used for a variety of dual-use research applications since the 1940s. By measuring the direction of the electric field vector from radar echoes, polarimetry may enhance an analysts understanding of scattering effects for both earth monitoring and tactical surveillance missions. Polarimetry may provide insight into surface types, materials, or orientations for natural and man-made targets. Polarimetric measurements may also be used to enhance the contrast between scattering surfaces such as man-made objects and their surroundings. This report represents an initial assessment of the utility of, and applications for, polarimetric SAR at Ku-band for airborne or unmanned aerial systems.

  15. Monitoring interseismic activity on the Ilan Plain (NE Taiwan) using Small Baseline PS-InSAR, GPS and leveling measurements: partitioning from arc-continent collision and backarc extension

    Science.gov (United States)

    Su, Zhe; Hu, Jyr-Ching; Wang, Erchie; Li, Yongsheng; Yang, Yinghui; Wang, Pei-Ling

    2018-01-01

    The Ilan Plain, located in Northeast Taiwan, represents a transition zone between oblique collision (between the Luzon Arc and the Eurasian Plate) and backarc extension (the Okinawa Trough). The mechanism for this abrupt transition from arc-continent collision to backarc extension remains uncertain. We used Global Positioning System (GPS), leveling and multi-interferogram Small Baseline Persistent Scatterer Interferometry (SBAS-PSI) data to monitor the interseismic activity in the basin. A common reference site was selected for the data sets. The horizontal component of GPS and the vertical measurements of the leveling data were converted to line-of-sight (LOS) data and compared with the SBAS-PSI data. The comparison shows that the entire Ilan Plain is undergoing rapid subsidence at a maximum rate of -11 ± 2 mm yr-1 in the LOS direction. We speculate that vertical deformation and anthropogenic activity may play important roles in this deformation. We also performed a joint inversion modeling that combined both the DInSAR and strong motion data to constrain the source model of the 2005 Ilan earthquake. The best-fitting model predicts that the Sansing fault caused the 2005 Ilan earthquake. The observed transtensional deformation is dominated by the normal faulting with a minor left-lateral strike-slip motion. We compared our SBAS-PSI results with the short-term (2005-2009) groundwater level changes. The results indicate that although pumping-induced surface subsidence cannot be excluded, tectonic deformation, including rapid southward movement of the Ryukyu arc and backarc extension of the Okinawa Trough, characterizes the opening of the Ilan Plain. Furthermore, a series of normal and left-lateral strike-slip transtensional faults, including the Choshui and Sansing faults, form a bookshelf-like structure that accommodates the extension of the plain. Although situated in a region of complex structural interactions, the Ilan Plain is primarily controlled by extension

  16. Forest Structure Characterization Using Jpl's UAVSAR Multi-Baseline Polarimetric SAR Interferometry and Tomography

    Science.gov (United States)

    Neumann, Maxim; Hensley, Scott; Lavalle, Marco; Ahmed, Razi

    2013-01-01

    This paper concerns forest remote sensing using JPL's multi-baseline polarimetric interferometric UAVSAR data. It presents exemplary results and analyzes the possibilities and limitations of using SAR Tomography and Polarimetric SAR Interferometry (PolInSAR) techniques for the estimation of forest structure. Performance and error indicators for the applicability and reliability of the used multi-baseline (MB) multi-temporal (MT) PolInSAR random volume over ground (RVoG) model are discussed. Experimental results are presented based on JPL's L-band repeat-pass polarimetric interferometric UAVSAR data over temperate and tropical forest biomes in the Harvard Forest, Massachusetts, and in the La Amistad Park, Panama and Costa Rica. The results are partially compared with ground field measurements and with air-borne LVIS lidar data.

  17. Analysis on Vertical Scattering Signatures in Forestry with PolInSAR

    Science.gov (United States)

    Guo, Shenglong; Li, Yang; Zhang, Jingjing; Hong, Wen

    2014-11-01

    We apply accurate topographic phase to the Freeman-Durden decomposition for polarimetric SAR interferometry (PolInSAR) data. The cross correlation matrix obtained from PolInSAR observations can be decomposed into three scattering mechanisms matrices accounting for the odd-bounce, double-bounce and volume scattering. We estimate the phase based on the Random volume over Ground (RVoG) model, and as the initial input parameter of the numerical method which is used to solve the parameters of decomposition. In addition, the modified volume scattering model introduced by Y. Yamaguchi is applied to the PolInSAR target decomposition in forest areas rather than the pure random volume scattering as proposed by Freeman-Durden to make best fit to the actual measured data. This method can accurately retrieve the magnitude associated with each mechanism and their vertical location along the vertical dimension. We test the algorithms with L- and P- band simulated data.

  18. Integrated Data Processing Methodology for Airborne Repeat-pass Differential SAR Interferometry

    Science.gov (United States)

    Dou, C.; Guo, H.; Han, C.; Yue, X.; Zhao, Y.

    2014-11-01

    Short temporal baseline and multiple ground deformation information can be derived from the airborne differential synthetic aperture radar Interforemetry (D-InSAR). However, affected by the turbulence of the air, the aircraft would deviate from the designed flight path with high frequent vibrations and changes both in the flight trajectory and attitude. Restricted by the accuracy of the position and orientation system (POS), these high frequent deviations can not be accurately reported, which would pose great challenges in motion compensation and interferometric process. Thus, these challenges constrain its wider applications. The objective of this paper is to investigate the accurate estimation and compensation of the residual motion errors in the airborne SAR imagery and time-varying baseline errors between the diffirent data acquirations, furthermore, to explore the integration data processing theory for the airborne D-InSAR system, and thus help to accomplish the correct derivation of the ground deformation by using the airborne D-InSAR measurements.

  19. A putative non-hr origin of DNA replication in the HindIII-K fragment of Autographa californica multiple nucleocapsid nuclear polyhedrosis virus

    NARCIS (Netherlands)

    Kool, M.; Goldbach, R. W.; Vlak, J. M.

    1994-01-01

    In addition to the seven known homologous regions (hrs) of Autographa californica multiple nucleocapsid polyhedrosis virus (AcMNPV) the HindIII-K fragment was also found to carry a putative ori, although this fragment does not contain an hr. Deletion analysis showed that this ori contains several

  20. Comparison of four moderate-size earthquakes in southern California using seismology and InSAR

    Science.gov (United States)

    Mellors, R.J.; Magistrale, H.; Earle, P.; Cogbill, A.H.

    2004-01-01

    Source parameters determined from interferometric synthetic aperture radar (InSAR) measurements and from seismic data are compared from four moderate-size (less than M 6) earthquakes in southern California. The goal is to verify approximate detection capabilities of InSAR, assess differences in the results, and test how the two results can be reconciled. First, we calculated the expected surface deformation from all earthquakes greater than magnitude 4 in areas with available InSAR data (347 events). A search for deformation from the events in the interferograms yielded four possible events with magnitudes less than 6. The search for deformation was based on a visual inspection as well as cross-correlation in two dimensions between the measured signal and the expected signal. A grid-search algorithm was then used to estimate focal mechanism and depth from the InSAR data. The results were compared with locations and focal mechanisms from published catalogs. An independent relocation using seismic data was also performed. The seismic locations fell within the area of the expected rupture zone for the three events that show clear surface deformation. Therefore, the technique shows the capability to resolve locations with high accuracy and is applicable worldwide. The depths determined by InSAR agree with well-constrained seismic locations determined in a 3D velocity model. Depth control for well-imaged shallow events using InSAR data is good, and better than the seismic constraints in some cases. A major difficulty for InSAR analysis is the poor temporal coverage of InSAR data, which may make it impossible to distinguish deformation due to different earthquakes at the same location.

  1. SAR and LIDAR fusion: experiments and applications

    Science.gov (United States)

    Edwards, Matthew C.; Zaugg, Evan C.; Bradley, Joshua P.; Bowden, Ryan D.

    2013-05-01

    In recent years ARTEMIS, Inc. has developed a series of compact, versatile Synthetic Aperture Radar (SAR) systems which have been operated on a variety of small manned and unmanned aircraft. The multi-frequency-band SlimSAR has demonstrated a variety of capabilities including maritime and littoral target detection, ground moving target indication, polarimetry, interferometry, change detection, and foliage penetration. ARTEMIS also continues to build upon the radar's capabilities through fusion with other sensors, such as electro-optical and infrared camera gimbals and light detection and ranging (LIDAR) devices. In this paper we focus on experiments and applications employing SAR and LIDAR fusion. LIDAR is similar to radar in that it transmits a signal which, after being reflected or scattered by a target area, is recorded by the sensor. The differences are that a LIDAR uses a laser as a transmitter and optical sensors as a receiver, and the wavelengths used exhibit a very different scattering phenomenology than the microwaves used in radar, making SAR and LIDAR good complementary technologies. LIDAR is used in many applications including agriculture, archeology, geo-science, and surveying. Some typical data products include digital elevation maps of a target area and features and shapes extracted from the data. A set of experiments conducted to demonstrate the fusion of SAR and LIDAR data include a LIDAR DEM used in accurately processing the SAR data of a high relief area (mountainous, urban). Also, feature extraction is used in improving geolocation accuracy of the SAR and LIDAR data.

  2. Wave directional spectrum from SAR imagery

    Digital Repository Service at National Institute of Oceanography (India)

    Fernandes, A.A.; Sarma, Y.V.B.; Menon, H.B.; Vethamony, P.

    < 2m and the zero-crossing period during the satellite overpass is small (< 6s, �O�O < 60m). We therefore utilized the visit of one of the authors (Sarma) to the Southampton Oceanographic Centre, U.K., to procure two ERS-1 digital image mode SAR...-dimensional FFT as well as a computer program for downloading SAR data from CCT. Finally we owe a debt of gratitude to J C da Silva, Southampton Oceanographic Centre, U K for sharing some of his SAR data with us. References Allan T. D. (Ed) (1983...

  3. SAR Tomography for Terrestrial Snow Stratigraphy

    Science.gov (United States)

    Lei, Y.; Xu, X.; Baldi, C.; Bleser, J. W. D.; Yueh, S. H.; Elder, K.

    2017-12-01

    Traditional microwave observation of snowpack includes brightness temperature and backscatter. The single baseline configuration and loss of phase information hinders the retrieval of snow stratigraphy information from microwave observations. In this paper, we are investigating the tomography of polarimetric SAR to measure snow stratigraphy. In the past two years, we have developed a homodyne frequency modulated continuous wave radar (FMCW), operation at three earth exploration satellite bands within the X-band and Ku-band spectrums (centered at 9.6 GHz, 13.5 GHz, and 17.2 GHz) at Jet Propulsion Laboratory. The transceiver is mounted to a dual-axis planar scanner (60cm in each direction), which translates the antenna beams across the target area creating a tomographic baseline in two directions. Dual-antenna architecture was implemented to improve the isolation between the transmitter and receiver. This technique offers a 50 dB improvement in signal-to-noise ratio versus conventional single-antenna FMCW radar systems. With current setting, we could have around 30cm vertical resolution. The system was deployed on a ground based tower at the Fraser Experimental Forest (FEF) Headquarters, near Fraser, CO, USA (39.847°N, 105.912°W) from February 1 to April 30, 2017 and run continuously with some gaps for required optional supports. FEF is a 93-km2 research watershed in the heart of the central Rocky Mountains approximately 80-km West of Denver. During the campaign, in situ measurements of snow depth and other snowpack properties were performed every week for comparison with the remotely sensed data. A network of soil moisture sensors, time-lapse cameras, acoustic depth sensors, laser depth sensor and meteorological instruments was installed next to the site to collect in situ measurements of snow, weather, and soil conditions. Preliminary tomographic processing of ground based SAR data of snowpack at X- and Ku- band has revealed the presence of multiple layers within

  4. Infection control for SARS in a tertiary neonatal centre.

    Science.gov (United States)

    Ng, P C; So, K W; Leung, T F; Cheng, F W T; Lyon, D J; Wong, W; Cheung, K L; Fung, K S C; Lee, C H; Li, A M; Hon, K L E; Li, C K; Fok, T F

    2003-09-01

    The Severe Acute Respiratory Syndrome (SARS) is a newly discovered infectious disease caused by a novel coronavirus, which can readily spread in the healthcare setting. A recent community outbreak in Hong Kong infected a significant number of pregnant women who subsequently required emergency caesarean section for deteriorating maternal condition and respiratory failure. As no neonatal clinician has any experience in looking after these high risk infants, stringent infection control measures for prevention of cross infection between patients and staff are important to safeguard the wellbeing of the work force and to avoid nosocomial spread of SARS within the neonatal unit. This article describes the infection control and patient triage policy of the neonatal unit at the Prince of Wales Hospital, Hong Kong. We hope this information is useful in helping other units to formulate their own infection control plans according to their own unit configuration and clinical needs.

  5. AUTOMATIC INTERPRETATION OF HIGH RESOLUTION SAR IMAGES: FIRST RESULTS OF SAR IMAGE SIMULATION FOR SINGLE BUILDINGS

    Directory of Open Access Journals (Sweden)

    J. Tao

    2012-09-01

    Full Text Available Due to the all-weather data acquisition capabilities, high resolution space borne Synthetic Aperture Radar (SAR plays an important role in remote sensing applications like change detection. However, because of the complex geometric mapping of buildings in urban areas, SAR images are often hard to interpret. SAR simulation techniques ease the visual interpretation of SAR images, while fully automatic interpretation is still a challenge. This paper presents a method for supporting the interpretation of high resolution SAR images with simulated radar images using a LiDAR digital surface model (DSM. Line features are extracted from the simulated and real SAR images and used for matching. A single building model is generated from the DSM and used for building recognition in the SAR image. An application for the concept is presented for the city centre of Munich where the comparison of the simulation to the TerraSAR-X data shows a good similarity. Based on the result of simulation and matching, special features (e.g. like double bounce lines, shadow areas etc. can be automatically indicated in SAR image.

  6. Combined DEM Extration Method from StereoSAR and InSAR

    Science.gov (United States)

    Zhao, Z.; Zhang, J. X.; Duan, M. Y.; Huang, G. M.; Yang, S. C.

    2015-06-01

    A pair of SAR images acquired from different positions can be used to generate digital elevation model (DEM). Two techniques exploiting this characteristic have been introduced: stereo SAR and interferometric SAR. They permit to recover the third dimension (topography) and, at the same time, to identify the absolute position (geolocation) of pixels included in the imaged area, thus allowing the generation of DEMs. In this paper, StereoSAR and InSAR combined adjustment model are constructed, and unify DEM extraction from InSAR and StereoSAR into the same coordinate system, and then improve three dimensional positioning accuracy of the target. We assume that there are four images 1, 2, 3 and 4. One pair of SAR images 1,2 meet the required conditions for InSAR technology, while the other pair of SAR images 3,4 can form stereo image pairs. The phase model is based on InSAR rigorous imaging geometric model. The master image 1 and the slave image 2 will be used in InSAR processing, but the slave image 2 is only used in the course of establishment, and the pixels of the slave image 2 are relevant to the corresponding pixels of the master image 1 through image coregistration coefficient, and it calculates the corresponding phase. It doesn't require the slave image in the construction of the phase model. In Range-Doppler (RD) model, the range equation and Doppler equation are a function of target geolocation, while in the phase equation, the phase is also a function of target geolocation. We exploit combined adjustment model to deviation of target geolocation, thus the problem of target solution is changed to solve three unkonwns through seven equations. The model was tested for DEM extraction under spaceborne InSAR and StereoSAR data and compared with InSAR and StereoSAR methods respectively. The results showed that the model delivered a better performance on experimental imagery and can be used for DEM extraction applications.

  7. Geodetic integration of Sentinel-1A IW data using PSInSAR in Hungary

    Science.gov (United States)

    Farkas, Péter; Hevér, Renáta; Grenerczy, Gyula

    2015-04-01

    ESA's latest Synthetic Aperture Radar (SAR) mission Sentinel-1 is a huge step forward in SAR interferometry. With its default acquisition mode called the Interferometric Wide Swath Mode (IW) areas through all scales can be mapped with an excellent return time of 12 days (while only the Sentinel-1A is in orbit). Its operational data policy is also a novelty, it allows scientific users free and unlimited access to data. It implements a new type of ScanSAR mode called Terrain Observation with Progressive Scan (TOPS) SAR. It has the same resolution as ScanSAR but with better signal-to-noise ratio distribution. The bigger coverage is achieved by rotation of the antenna in the azimuth direction, therefore it requires very precise co-registration because even errors under a pixel accuracy can introduce azimuth phase variations caused by differences in Doppler-centroids. In our work we will summarize the benefits and the drawbacks of the IW mode. We would like to implement the processing chain of GAMMA Remote Sensing of such data for mapping surface motion with special attention to the co-registration step. Not only traditional InSAR but the advanced method of Persistent Scatterer InSAR (PSInSAR) will be performed and presented as well. PS coverage, along with coherence, is expected to be good due to the small perpendicular and temporal baselines. We would also like to integrate these measurements into national geodetic networks using common reference points. We have installed trihedral corner reflectors at some selected sites to aid precise collocation. Thus, we aim to demonstrate that Sentinel-1 can be effectively used for surface movement detection and monitoring and it can also provide valuable information for the improvement of our networks.

  8. SAR compliance assessment of PMR 446 and FRS walkie-talkies.

    Science.gov (United States)

    Vermeeren, Günter; Joseph, Wout; Martens, Luc

    2015-10-01

    The vast amount of studies on radiofrequency dosimetry deal with exposure due to mobile devices and base station antennas for cellular communication systems. This study investigates compliance of walkie-talkies to exposure guidelines established by the International Commission on Non-Ionizing Radiation Protection and the Federal Communications Committee. The generic walkie-talkie consisted of a helical antenna and a ground plane and was derived by reverse engineering of a commercial walkie-talkie. Measured and simulated values of antenna characteristics and electromagnetic near fields of the generic walkie-talkie were within 2% and 8%, respectively. We also validated normalized electromagnetic near fields of the generic walkie-talkie against a commercial device and observed a very good agreement (deviation based on magnetic near field. Finally, we found that SAR of commercial devices is within current SAR limits for general public exposure for a worst-case duty cycle of 100%, that is, about 3 times and 6 times lower than the limit on the 1 g SAR (1.6 W/kg) and 10 g SAR (2 W/kg), respectively. But, an effective radiated power as specified by the Private Mobile Radio at 446 MHz (PMR 446) radio standard can cause localized SAR exceeding SAR limits for 1 g of tissue. © 2015 Wiley Periodicals, Inc.

  9. Multi-temporal and Dual-polarization Interferometric SAR for Land Cover Type Classification

    Directory of Open Access Journals (Sweden)

    WANG Xinshuang

    2015-05-01

    Full Text Available In order to study SAR land cover classification method, this paper uses the multi-dimensional combination of temporal,polarization and InSAR data. The area covered by space borne data of ALOS PALSAR in Xunke County,Heilongjiang Province was chosen as test site. A land cover classification technique of SVM based on multi-temporal, multi-polarization and InSAR data had been proposed, using the sensitivity to land cover type of multi-temporal, multi-polarization SAR data and InSAR measurements, and combing time series characteristic of backscatter coefficient and correlation coefficient to identify ground objects. The results showed the problem of confusion between forest land and urban construction land can be nicely solved, using the correlation coefficient between HH and HV, and also combing the selected temporal, polarization and InSAR characteristics. The land cover classification result with higher accuracy is gotten using the classification algorithm proposed in this paper.

  10. Urban Monitoring Based on SENTINEL-1 Data Using Permanent Scatterer Interferometry and SAR Tomography

    Science.gov (United States)

    Crosetto, M.; Budillon, A.; Johnsy, A.; Schirinzi, G.; Devanthéry, N.; Monserrat, O.; Cuevas-González, M.

    2018-04-01

    A lot of research and development has been devoted to the exploitation of satellite SAR images for deformation measurement and monitoring purposes since Differential Interferometric Synthetic Apertura Radar (InSAR) was first described in 1989. In this work, we consider two main classes of advanced DInSAR techniques: Persistent Scatterer Interferometry and Tomographic SAR. Both techniques make use of multiple SAR images acquired over the same site and advanced procedures to separate the deformation component from the other phase components, such as the residual topographic component, the atmospheric component, the thermal expansion component and the phase noise. TomoSAR offers the advantage of detecting either single scatterers presenting stable proprieties over time (Persistent Scatterers) and multiple scatterers interfering within the same range-azimuth resolution cell, a significant improvement for urban areas monitoring. This paper addresses a preliminary inter-comparison of the results of both techniques, for a test site located in the metropolitan area of Barcelona (Spain), where interferometric Sentinel-1 data were analysed.

  11. Monitoring informal settlements using SAR polarimetry

    CSIR Research Space (South Africa)

    Kleynhans, W

    2012-10-01

    Full Text Available for settlement mapping and detection has remained largely unexplored in Southern Africa. The objective of this study is to investigate the possible role that SAR polarimetry could play in the monitoring of informal settlements....

  12. Work session on the SAR. Pt. 2

    International Nuclear Information System (INIS)

    Burkart, K.

    1980-01-01

    The present paper contains the tables of the contribution of K. Burkart 'Work Session on the SAR' to the IAEA Interregional Training Course held in Sept/Oct. 1980 at the Kernforschungszentrum Karlsruhe. (RW)

  13. Image based SAR product simulation for analysis

    Science.gov (United States)

    Domik, G.; Leberl, F.

    1987-01-01

    SAR product simulation serves to predict SAR image gray values for various flight paths. Input typically consists of a digital elevation model and backscatter curves. A new method is described of product simulation that employs also a real SAR input image for image simulation. This can be denoted as 'image-based simulation'. Different methods to perform this SAR prediction are presented and advantages and disadvantages discussed. Ascending and descending orbit images from NASA's SIR-B experiment were used for verification of the concept: input images from ascending orbits were converted into images from a descending orbit; the results are compared to the available real imagery to verify that the prediction technique produces meaningful image data.

  14. Attribute Learning for SAR Image Classification

    Directory of Open Access Journals (Sweden)

    Chu He

    2017-04-01

    Full Text Available This paper presents a classification approach based on attribute learning for high spatial resolution Synthetic Aperture Radar (SAR images. To explore the representative and discriminative attributes of SAR images, first, an iterative unsupervised algorithm is designed to cluster in the low-level feature space, where the maximum edge response and the ratio of mean-to-variance are included; a cross-validation step is applied to prevent overfitting. Second, the most discriminative clustering centers are sorted out to construct an attribute dictionary. By resorting to the attribute dictionary, a representation vector describing certain categories in the SAR image can be generated, which in turn is used to perform the classifying task. The experiments conducted on TerraSAR-X images indicate that those learned attributes have strong visual semantics, which are characterized by bright and dark spots, stripes, or their combinations. The classification method based on these learned attributes achieves better results.

  15. SARS Patients and Their Close Contacts

    Science.gov (United States)

    ... Outreach Workers VIII. Infection Control for Laboratory and Pathology Procedures IX. Occupational Health Issues Appendix I1 Appendix ... SARS was recognized as a global threat in March 2003, after first appearing in Southern China in ...

  16. Multiple Input - Multiple Output (MIMO) SAR

    Data.gov (United States)

    National Aeronautics and Space Administration — This effort will research and implement advanced Multiple-Input Multiple-Output (MIMO) Synthetic Aperture Radar (SAR) techniques which have the potential to improve...

  17. Monitoring of Three Case Studies of Creeping Landslides in Ecuador using L-band SAR Interferometry (InSAR)

    Science.gov (United States)

    Mayorga Torres, T. M.; Mohseni Aref, M.

    2015-12-01

    Tannia Mayorga Torres1,21 Universidad Central del Ecuador. Faculty of Geology, Mining, Oil, and Environment 2 Hubert H. Humphrey Fellowship 2015-16 IntroductionLandslides lead to human and economic losses across the country, mainly in the winter season. On the other hand, satellite radar data has cost-effective benefits due to open-source software and free availability of data. With the purpose of establishing an early warning system of landslide-related surface deformation, three case studies were designed in the Coast, Sierra (Andean), and Oriente (jungle) regions. The objective of this work was to assess the capability of L-band InSAR to get phase information. For the calculation of the interferograms in Repeat Orbit Interferometry PACkage, the displacement was detected as the error and was corrected. The coherence images (Figure 1) determined that L-band is suitable for InSAR processing. Under this frame, as a first approach, the stacking DInSAR technique [1] was applied in the case studies [2]; however, due to lush vegetation and steep topography, it is necessary to apply advanced InSAR techniques [3]. The purpose of the research is to determine a pattern of data acquisition and successful results to understand the spatial and temporal ground movements associated with landslides. The further work consists of establishing landslide inventories to combine phases of SAR images to generate maps of surface deformation in Tumba-San Francisco and Guarumales to compare the results with ground-based measurements to determine the maps' accuracy. References[1] Sandwell D., Price E. (1998). Phase gradient approach to stacking interferograms. Journal of Geophysical Research, Vol. 103, N. B12, pp. 30,183-30,204. [2] Mayorga T., Platzeck G. (2014). Using DInSAR as a tool to detect unstable terrain areas in an Andes region in Ecuador. NH3.5-Blue Poster B298, Vol. 16, EGU2014-16203. Austria. [3] Wasowski J., Bovenga F. (2014). Investigating landslides and unstable slopes with

  18. Cloning and characterization of DNA complementary to the canine distemper virus mRNA encoding matrix, phosphoprotein, and nucleocapsid protein

    International Nuclear Information System (INIS)

    Rozenblatt, S.; Eizenberg, O.; Englund, G.; Bellini, W.J.

    1985-01-01

    Double-stranded cDNA synthesized from total polyadenylate-containing mRNA, extracted from monkey kidney cells infected with canine distemper virus (CDV), has been cloned into the PstI site of Escherichia coli plasmid pBR322. Clones containing canine distemper virus DNA were identified by hybridization to a canine distemper virus-specific, 32 P-labeled cDNA. Four specific clones containing different classes of sequences have been identified. The cloned plasmids contain inserts of 800 (clone 44-80), 960 (clone 74-16), 1700 (clone 364), and 950 (clone 40-9) base pairs. The sizes of the mRNA species complementary to these inserts are 1500, 1850, 1850 and 2500 nucleotides, respectively, as determined by the Northern technique. Three of the cloned DNA fragments were further identified as the reverse transcripts of the mRNA coding for the matrix, phosphoprotein, and nucleocapsid protein of CDV

  19. DNA vaccine encoding nucleocapsid and surface proteins of wild type canine distemper virus protects its natural host against distemper.

    Science.gov (United States)

    Cherpillod, P; Tipold, A; Griot-Wenk, M; Cardozo, C; Schmid, I; Fatzer, R; Schobesberger, M; Zurbriggen, R; Bruckner, L; Roch, F; Vandevelde, M; Wittek, R; Zurbriggen, A

    2000-07-01

    Canine distemper virus (CDV), a member of the genus Morbillivirus induces a highly infectious, frequently lethal disease in dogs and other carnivores. Current vaccines against canine distemper consisting of attenuated viruses have been in use for many years and have greatly reduced the incidence of distemper in the dog population. However, certain strains may not guarantee adequate protection and others can induce post vaccinal encephalitis. We tested a DNA vaccine for its ability to protect dogs, the natural host of CDV, against distemper. We constructed plasmids containing the nucleocapsid, the fusion, and the attachment protein genes of a virulent canine distemper virus strain. Mice inoculated with these plasmids developed humoral and cellular immune responses against CDV antigens. Dogs immunized with the expression plasmids developed virus-neutralizing antibodies. Significantly, vaccinated dogs were protected against challenge with virulent CDV, whereas unvaccinated animals succumbed to distemper.

  20. Identification of Rift Valley fever virus nucleocapsid protein-RNA binding inhibitors using a high-throughput screening assay.

    Science.gov (United States)

    Ellenbecker, Mary; Lanchy, Jean-Marc; Lodmell, J Stephen

    2012-09-01

    Rift Valley fever virus (RVFV) is an emerging infectious pathogen that causes severe disease in humans and livestock and has the potential for global spread. Currently, there is no proven effective treatment for RVFV infection, and there is no licensed vaccine. Inhibition of RNA binding to the essential viral nucleocapsid (N) protein represents a potential antiviral therapeutic strategy because all of the functions performed by N during infection involve RNA binding. To target this interaction, we developed a fluorescence polarization-based high-throughput drug-screening assay and tested 26 424 chemical compounds for their ability to disrupt an N-RNA complex. From libraries of Food and Drug Administration-approved drugs, druglike molecules, and natural product extracts, we identified several lead compounds that are promising candidates for medicinal chemistry.

  1. Cloning and characterization of DNA complementary to the canine distemper virus mRNA encoding matrix, phosphoprotein, and nucleocapsid protein

    Energy Technology Data Exchange (ETDEWEB)

    Rozenblatt, S.; Eizenberg, O.; Englund, G.; Bellini, W.J.

    1985-02-01

    Double-stranded cDNA synthesized from total polyadenylate-containing mRNA, extracted from monkey kidney cells infected with canine distemper virus (CDV), has been cloned into the PstI site of Escherichia coli plasmid pBR322. Clones containing canine distemper virus DNA were identified by hybridization to a canine distemper virus-specific, /sup 32/P-labeled cDNA. Four specific clones containing different classes of sequences have been identified. The cloned plasmids contain inserts of 800 (clone 44-80), 960 (clone 74-16), 1700 (clone 364), and 950 (clone 40-9) base pairs. The sizes of the mRNA species complementary to these inserts are 1500, 1850, 1850 and 2500 nucleotides, respectively, as determined by the Northern technique. Three of the cloned DNA fragments were further identified as the reverse transcripts of the mRNA coding for the matrix, phosphoprotein, and nucleocapsid protein of CDV.

  2. Construction of a recombinant viral vector containing part of the nucleocapsid protein gene of newcastle disease virus

    Energy Technology Data Exchange (ETDEWEB)

    Bader, D.E.

    1995-09-01

    This report describes the procedures used to clone a 673 base pair gene fragment of the major nucleocapsid protein gene of Newcastle disease virus into a viral vector molecule for the purpose of maintaining a stable, long-term, renewable source of this target sequence for gene probe studies. The gene fragment was prepared by reverse-transcription polymerase chain reaction of Newcastle disease virus RNA and was cloned into the viral DNA vector Ml3mp18 RF to produce a recombinant DNA molecule. The cloned fragment was shown to be present in the recombinant clones based on (i) clonal selection on indicator plates; (ii) restriction enzyme analysis; (iii) gene probe analysis and (iv) nested PCR amplification.

  3. The Singaporean response to the SARS outbreak: knowledge sufficiency versus public trust.

    Science.gov (United States)

    Deurenberg-Yap, M; Foo, L L; Low, Y Y; Chan, S P; Vijaya, K; Lee, M

    2005-12-01

    During the outbreak of severe acute respiratory syndrome (SARS) in Singapore from 1 March to 11 May 2003, various national prevention and control measures were undertaken to control and eliminate the transmission of the infection. During the initial period of the epidemic, public communication was effected through press releases and media coverage of the epidemic. About a month into the epidemic, a public education campaign was mounted to educate Singaporeans on SARS and adoption of appropriate behaviours to prevent the spread of the disease. A survey was conducted in late April 2003 to assess Singaporeans' knowledge about SARS and infection control measures, and their concerns and anxiety in relation to the outbreak. The survey also sought to assess their confidence in the ability of various institutions to deal with SARS and their opinion on the seemingly tough measures enforced. The study involved 853 adults selected from a telephone-sampling frame. Stratified sampling was used to ensure adequate representation from major ethnic groups and age groups. The study showed that the overall knowledge about SARS and control measures undertaken was low (mean per cent score of 24.5 +/- 8.9%). While 82% of respondents expressed confidence in measures undertaken by Tan Tock Seng Hospital (the hospital designated to manage SARS), only 36% had confidence in nursing homes. However, >80% of the public agreed that the preventive and control measures instituted were appropriate. Despite the low knowledge score, the overall mean satisfaction score of the government's response to SARS was 4.47 (out of possible highest score of 5.00), with >93% of adult Singaporeans indicating that they were satisfied or very satisfied with the government's response to SARS. Generally, Singaporeans had a high level of public trust (satisfaction with government, confidence in institutions, deeming government measures appropriate), scoring 11.4 out of possible maximum of 14. The disparity between low

  4. SAR Ambiguity Study for the Cassini Radar

    Science.gov (United States)

    Hensley, Scott; Im, Eastwood; Johnson, William T. K.

    1993-01-01

    The Cassini Radar's synthetic aperture radar (SAR) ambiguity analysis is unique with respect to other spaceborne SAR ambiguity analyses owing to the non-orbiting spacecraft trajectory, asymmetric antenna pattern, and burst mode of data collection. By properly varying the pointing, burst mode timing, and radar parameters along the trajectory this study shows that the signal-to-ambiguity ratio of better than 15 dB can be achieved for all images obtained by the Cassini Radar.

  5. Possible roles of HIV-1 nucleocapsid protein in the specificity of proviral DNA synthesis and in its variability.

    Science.gov (United States)

    Lapadat-Tapolsky, M; Gabus, C; Rau, M; Darlix, J L

    1997-05-02

    Retroviral nucleocapsid (NC) protein is an integral part of the virion nucleocapsid where it coats the dimeric RNA genome. Due to its nucleic acid binding and annealing activities, NC protein directs the annealing of the tRNA primer to the primer binding site and greatly facilitates minus strand DNA elongation and transfer while protecting the nucleic acids against nuclease degradation. To understand the role of NCp7 in viral DNA synthesis, we examined the influence of NCp7 on self-primed versus primer-specific reverse transcription. The results show that HIV-1 NCp7 can extensively inhibit self-primed reverse transcription of viral and cellular RNAs while promoting primer-specific synthesis of proviral DNA. The role of NCp7 vis-a-vis the presence of mutations in the viral DNA during minus strand elongation was examined. NCp7 maximized the annealing between a cDNA(-) primer containing one to five consecutive errors and an RNA representing the 3' end of the genome. The ability of reverse transcriptase (RT) in the presence of NCp7 to subsequently extend the mutated primers depended upon the position of the mismatch within the primer:template complex. When the mutations were at the polymerisation site, primer extension by RT in the presence of NCp7 was very high, about 40% for one mismatch and 3% for five consecutive mismatches. Mutations within the DNA primer or at its 5' end had little effect on the extension of viral DNA by RT. Taken together these results indicate that NCp7 plays major roles in proviral DNA synthesis within the virion core due to its ability to promote prime-specific proviral DNA synthesis while concurrently inhibiting non-specific reverse transcription of viral and cellular RNAs. Moreover, the observation that NCp7 enhances the incorporation of mutations during minus strand DNA elongation favours the notion that NCp7 is a factor contributing to the high mutation rate of HIV-1.

  6. Nucleocapsid Gene-Mediated Transgenic Resistance Provides Protection Against Tomato spotted wilt virus Epidemics in the Field.

    Science.gov (United States)

    Herrero, S; Culbreath, A K; Csinos, A S; Pappu, H R; Rufty, R C; Daub, M E

    2000-02-01

    ABSTRACT Transformation of plants with the nucleocapsid (N) gene of Tomato spotted wilt tospovirus (TSWV) provides resistance to disease development; however, information is lacking on the response of plants to natural inoculum in the field. Three tobacco cultivars were transformed with the N gene of a dahlia isolate of TSWV (TSWV-D), and plants were evaluated over several generations in the greenhouse. The resistant phenotype was more frequently observed in 'Burley 21' than in 'KY-14' or 'K-326', but highly resistant 'Burley 21' transgenic lines were resistant to only 44% of the heterologous TSWV isolates tested. Advanced generation (R(3) and R(4)) transgenic resistant lines of 'Burley 21' and a 'K-326' F(1) hybrid containing the N genes of two TSWV isolates were evaluated in the field near Tifton, GA, where TSWV is endemic. Disease development was monitored by symptom expression and enzyme-linked immunosorbent assay (ELISA) analysis. Whereas incidence of TSWV infection in 'Burley 21' susceptible controls was 20% in 1996 and 62% in 1997, the mean incidence in transgenic lines was reduced to 4 and 31%, respectively. Three transgenic 'Burley 21' lines were identified that had significantly lower incidence of disease than susceptible controls over the two years of the study. In addition, the rate of disease increase at the onset of the 1997 epidemic was reduced for all the 'Burley 21' transgenic lines compared with the susceptible controls. The 'K-326' F(1) hybrid was as susceptible as the 'K-326' nontransformed control. ELISA analysis demonstrated that symptomless plants from the most resistant 'Burley 21' transgenic lines accumulated detectable nucleocapsid protein, whereas symptomless plants from more susceptible lines did not. We conclude that transgenic resistance to TSWV is effective in reducing incidence of the disease in the field, and that accumulation of transgene protein may be important in broad-spectrum resistance.

  7. Peptide domains involved in the localization of the porcine reproductive and respiratory syndrome virus nucleocapsid protein to the nucleolus

    International Nuclear Information System (INIS)

    Rowland, Raymond R.R.; Schneider, Paula; Fang Ying; Wootton, Sarah; Yoo, Dongwan; Benfield, David A.

    2003-01-01

    The nucleocapsid (N) protein of porcine reproductive and respiratory syndrome virus (PRRSV) is the principal component of the viral nucleocapsid and localizes to the nucleolus. Peptide sequence analysis of the N protein of several North American isolates identified two potential nuclear localization signal (NLS) sequences located at amino acids 10-13 and 41-42, which were labeled NLS-1 and NLS-2, respectively. Peptides containing NLS-1 or NLS-2 were sufficient to accumulate enhanced green fluorescent protein (EGFP) in the nucleus. The inactivation of NLS-1 by site-directed mutagenesis or the deletion of the first 14 amino acids did not affect N protein localization to the nucleolus. The substitution of key lysine residues with uncharged amino acids in NLS-2 blocked nuclear/nucleolar localization. Site-directed mutagenesis within NLS-2 identified the sequence, KKNKK, as forming the core localization domain within NLS-2. Using an in vitro pull-down assay, the N protein was able to bind importin-α, importin-β nuclear transport proteins. The localization pattern of N-EGFP fusion peptides represented by a series of deletions from the C- and N-terminal ends of the N protein identified a region covering amino acids 41-72, which contained a nucleolar localization signal (NoLS) sequence. The 41-72 N peptide when fused to EGFP mimicked the nucleolar-cytoplasmic distribution of native N. These results identify a single NLS involved in the transport of N from the cytoplasm and into nucleus. An additional peptide sequence, overlapping NLS-2, is involved in the further targeting of N to the nucleolus

  8. The baculovirus core gene ac83 is required for nucleocapsid assembly and per os infectivity of Autographa californica nucleopolyhedrovirus.

    Science.gov (United States)

    Zhu, Shimao; Wang, Wei; Wang, Yan; Yuan, Meijin; Yang, Kai

    2013-10-01

    Autographa californica multiple nucleopolyhedrovirus (AcMNPV) ac83 is a baculovirus core gene whose function in the AcMNPV life cycle is unknown. In the present study, an ac83-knockout AcMNPV (vAc83KO) was constructed to investigate the function of ac83 through homologous recombination in Escherichia coli. No budded virions were produced in vAc83KO-transfected Sf9 cells, although viral DNA replication was unaffected. Electron microscopy revealed that nucleocapsid assembly was aborted due to the ac83 deletion. Domain-mapping studies revealed that the expression of Ac83 amino acid residues 451 to 600 partially rescued the ability of AcMNPV to produce infectious budded virions. Bioassays indicated that deletion of the chitin-binding domain of Ac83 resulted in the failure of oral infection of Trichoplusia ni larvae by AcMNPV, but AcMNPV remained infectious following intrahemocoelic injection, suggesting that the domain is involved in the binding of occlusion-derived virions to the peritrophic membrane and/or to other chitin-containing insect tissues. It has been demonstrated that Ac83 is the only component with a chitin-binding domain in the per os infectivity factor complex on the occlusion-derived virion envelope. Interestingly, a functional inner nuclear membrane sorting motif, which may facilitate the localization of Ac83 to the envelopes of occlusion-derived virions, was identified by immunofluorescence analysis. Taken together, these results demonstrate that Ac83 plays an important role in nucleocapsid assembly and the establishment of oral infection.

  9. InSAR Scientific Computing Environment

    Science.gov (United States)

    Rosen, Paul A.; Sacco, Gian Franco; Gurrola, Eric M.; Zabker, Howard A.

    2011-01-01

    This computing environment is the next generation of geodetic image processing technology for repeat-pass Interferometric Synthetic Aperture (InSAR) sensors, identified by the community as a needed capability to provide flexibility and extensibility in reducing measurements from radar satellites and aircraft to new geophysical products. This software allows users of interferometric radar data the flexibility to process from Level 0 to Level 4 products using a variety of algorithms and for a range of available sensors. There are many radar satellites in orbit today delivering to the science community data of unprecedented quantity and quality, making possible large-scale studies in climate research, natural hazards, and the Earth's ecosystem. The proposed DESDynI mission, now under consideration by NASA for launch later in this decade, would provide time series and multiimage measurements that permit 4D models of Earth surface processes so that, for example, climate-induced changes over time would become apparent and quantifiable. This advanced data processing technology, applied to a global data set such as from the proposed DESDynI mission, enables a new class of analyses at time and spatial scales unavailable using current approaches. This software implements an accurate, extensible, and modular processing system designed to realize the full potential of InSAR data from future missions such as the proposed DESDynI, existing radar satellite data, as well as data from the NASA UAVSAR (Uninhabited Aerial Vehicle Synthetic Aperture Radar), and other airborne platforms. The processing approach has been re-thought in order to enable multi-scene analysis by adding new algorithms and data interfaces, to permit user-reconfigurable operation and extensibility, and to capitalize on codes already developed by NASA and the science community. The framework incorporates modern programming methods based on recent research, including object-oriented scripts controlling legacy and

  10. SARS: Key factors in crisis management.

    Science.gov (United States)

    Tseng, Hsin-Chao; Chen, Thai-Form; Chou, Shieu-Ming

    2005-03-01

    This study was conducted at a single hospital selected in Taipei during the SARS (Severe Acute Respiratory Syndrome) outbreak from March to July, 2003 in Taiwan. During this period of time, 104 SARS patients were admitted to the hospital. There were no negative reports related to the selected hospital despite its being located right in the center of an area struck by the epidemic. The purpose of this study was to identify the key factors enabling the hospital to survive SARS unscathed. Data were collected from in-depth interviews with the nursing directors and nursing managers of the SARS units, along with a review of relevant hospital documents. The five key elements identified as survival factors during this SARS crisis are as follows: 1. good control of timing for crisis management, 2. careful decision-making, 3. thorough implementation, 4. effective communication, and 5. trust between management and employees. The results of this study reconfirmed the selected hospital as a model for good crisis management during the SARS epidemic.

  11. Emergency product generation for disaster management using RISAT and DMSAR quick look SAR processors

    Science.gov (United States)

    Desai, Nilesh; Sharma, Ritesh; Kumar, Saravana; Misra, Tapan; Gujraty, Virendra; Rana, SurinderSingh

    2006-12-01

    Since last few years, ISRO has embarked upon the development of two complex Synthetic Aperture Radar (SAR) missions, viz. Spaceborne Radar Imaging Satellite (RISAT) and Airborne SAR for Disaster Mangement (DMSAR), as a capacity building measure under country's Disaster Management Support (DMS) Program, for estimating the extent of damage over large areas (~75 Km) and also assess the effectiveness of the relief measures undertaken during natural disasters such as cyclones, epidemics, earthquakes, floods and landslides, forest fires, crop diseases etc. Synthetic Aperture Radar (SAR) has an unique role to play in mapping and monitoring of large areas affected by natural disasters especially floods, owing to its unique capability to see through clouds as well as all-weather imaging capability. The generation of SAR images with quick turn around time is very essential to meet the above DMS objectives. Thus the development of SAR Processors, for these two SAR systems poses considerable challenges and design efforts. Considering the growing user demand and inevitable necessity for a full-fledged high throughput processor, to process SAR data and generate image in real or near-real time, the design and development of a generic SAR Processor has been taken up and evolved, which will meet the SAR processing requirements for both Airborne and Spaceborne SAR systems. This hardware SAR processor is being built, to the extent possible, using only Commercial-Off-The-Shelf (COTS) DSP and other hardware plug-in modules on a Compact PCI (cPCI) platform. Thus, the major thrust has been on working out Multi-processor Digital Signal Processor (DSP) architecture and algorithm development and optimization rather than hardware design and fabrication. For DMSAR, this generic SAR Processor operates as a Quick Look SAR Processor (QLP) on-board the aircraft to produce real time full swath DMSAR images and as a ground based Near-Real Time high precision full swath Processor (NRTP). It will

  12. Ocean Wave Parameters Retrieval from Sentinel-1 SAR Imagery

    Directory of Open Access Journals (Sweden)

    Weizeng Shao

    2016-08-01

    Full Text Available In this paper, a semi-empirical algorithm for significant wave height (Hs and mean wave period (Tmw retrieval from C-band VV-polarization Sentinel-1 synthetic aperture radar (SAR imagery is presented. We develop a semi-empirical function for Hs retrieval, which describes the relation between Hs and cutoff wavelength, radar incidence angle, and wave propagation direction relative to radar look direction. Additionally, Tmw can be also calculated through Hs and cutoff wavelength by using another empirical function. We collected 106 C-band stripmap mode Sentinel-1 SAR images in VV-polarization and wave measurements from in situ buoys. There are a total of 150 matchup points. We used 93 matchups to tune the coefficients of the semi-empirical algorithm and the rest 57 matchups for validation. The comparison shows a 0.69 m root mean square error (RMSE of Hs with a 18.6% of scatter index (SI and 1.98 s RMSE of Tmw with a 24.8% of SI. Results indicate that the algorithm is suitable for wave parameters retrieval from Sentinel-1 SAR data.

  13. Tie Points Extraction for SAR Images Based on Differential Constraints

    Science.gov (United States)

    Xiong, X.; Jin, G.; Xu, Q.; Zhang, H.

    2018-04-01

    Automatically extracting tie points (TPs) on large-size synthetic aperture radar (SAR) images is still challenging because the efficiency and correct ratio of the image matching need to be improved. This paper proposes an automatic TPs extraction method based on differential constraints for large-size SAR images obtained from approximately parallel tracks, between which the relative geometric distortions are small in azimuth direction and large in range direction. Image pyramids are built firstly, and then corresponding layers of pyramids are matched from the top to the bottom. In the process, the similarity is measured by the normalized cross correlation (NCC) algorithm, which is calculated from a rectangular window with the long side parallel to the azimuth direction. False matches are removed by the differential constrained random sample consensus (DC-RANSAC) algorithm, which appends strong constraints in azimuth direction and weak constraints in range direction. Matching points in the lower pyramid images are predicted with the local bilinear transformation model in range direction. Experiments performed on ENVISAT ASAR and Chinese airborne SAR images validated the efficiency, correct ratio and accuracy of the proposed method.

  14. TIE POINTS EXTRACTION FOR SAR IMAGES BASED ON DIFFERENTIAL CONSTRAINTS

    Directory of Open Access Journals (Sweden)

    X. Xiong

    2018-04-01

    Full Text Available Automatically extracting tie points (TPs on large-size synthetic aperture radar (SAR images is still challenging because the efficiency and correct ratio of the image matching need to be improved. This paper proposes an automatic TPs extraction method based on differential constraints for large-size SAR images obtained from approximately parallel tracks, between which the relative geometric distortions are small in azimuth direction and large in range direction. Image pyramids are built firstly, and then corresponding layers of pyramids are matched from the top to the bottom. In the process, the similarity is measured by the normalized cross correlation (NCC algorithm, which is calculated from a rectangular window with the long side parallel to the azimuth direction. False matches are removed by the differential constrained random sample consensus (DC-RANSAC algorithm, which appends strong constraints in azimuth direction and weak constraints in range direction. Matching points in the lower pyramid images are predicted with the local bilinear transformation model in range direction. Experiments performed on ENVISAT ASAR and Chinese airborne SAR images validated the efficiency, correct ratio and accuracy of the proposed method.

  15. Estimation of Boreal Forest Biomass Using Spaceborne SAR Systems

    Science.gov (United States)

    Saatchi, Sassan; Moghaddam, Mahta

    1995-01-01

    In this paper, we report on the use of a semiempirical algorithm derived from a two layer radar backscatter model for forest canopies. The model stratifies the forest canopy into crown and stem layers, separates the structural and biometric attributes of the canopy. The structural parameters are estimated by training the model with polarimetric SAR (synthetic aperture radar) data acquired over homogeneous stands with known above ground biomass. Given the structural parameters, the semi-empirical algorithm has four remaining parameters, crown biomass, stem biomass, surface soil moisture, and surface rms height that can be estimated by at least four independent SAR measurements. The algorithm has been used to generate biomass maps over the entire images acquired by JPL AIRSAR and SIR-C SAR systems. The semi-empirical algorithms are then modified to be used by single frequency radar systems such as ERS-1, JERS-1, and Radarsat. The accuracy. of biomass estimation from single channel radars is compared with the case when the channels are used together in synergism or in a polarimetric system.

  16. Discrimination of land cover from a multiparameter SAR data set

    International Nuclear Information System (INIS)

    Pierdicca, N.; Castracane, P.; Basili, P.; Ciotti, P.; Marzano, F.S.

    2001-01-01

    The identification of the most valuable radar observation parameters (e.g., frequency, polarisation, incidence angle) is important both for designing non-redundant high-performance sensors (i.e. selection of frequency bands and polarizations) and for specifying mission operation requirements (i.e. temporal sampling, incidence angle). Moreover, the task of classifying multiparameter SAR images may require to adopt a strategy that implies the selection of a number of features among those available from this kind of sensors. In this paper it has performed this kind of analysis in a specific area of interest to account for the particular conditions in which remotely sensed data are going to be used. The paper summarises the results of the analysis of the radar data acquired during the MAC Europe '91 and X-SAR/SIR-C campaigns over the Montespertoli test site in Italy. The analysis is based mainly on a statistical approach aiming at demonstrating what is the contribution of different measurements performed by the polarimetric SAR for discriminating the surface coverage. The work is intended to furnish a guideline to develop an optimal strategy for acquiring and processing polarimetric data to be used for land classification

  17. Ionospheric errors compensation for ground deformation estimation with new generation SAR

    Science.gov (United States)

    Gomba, Giorgio; De Zan, Francesco; Rodriguez Gonzalez, Fernando

    2017-04-01

    Synthetic aperture radar (SAR) and interferometric SAR (InSAR) measurements are disturbed by the propagation velocity changes of microwaves that are caused by the high density of free electrons in the ionosphere. Most affected are low-frequency (L- or P-band) radars, as the recently launched ALOS-2 and the future Tandem-L and NISAR, although higher frequency (C- or X-band) systems, as the recently launched Sentinel-1, are not immune. Since the ionosphere is an obstacle to increasing the precision of new generation SAR systems needed to remotely measure the Earth's dynamic processes as for example ground deformation, it is necessary to estimate and compensate ionospheric propagation delays in SAR signals. In this work we discuss about the influence of the ionosphere on interferograms and the possible correction methods with relative accuracies. Consequently, the effect of ionospheric induced errors on ground deformation measurements prior and after ionosphere compensation will be analyzed. Examples will be presented of corrupted measurements of earthquakes and fault motion along with the corrected results using different methods.

  18. Advanced InSAR imaging for dune mapping

    Science.gov (United States)

    Havivi, Shiran; August, Yitzhak; Blumberg, Dan G.; Rotman, Stanley R.

    2015-04-01

    Aeolian morphologies are formed in the presence of sufficient wind energy and available particles. These processes occur naturally or are further enhanced or reduced by human intervention. The dimensions of change are dependent primarily on the wind energy and surface properties. Since the 1970's, remote sensing imagery both optical and radar, are used for documentation and interpretation of the geomorphologic changes of sand dunes. Remote sensing studies of Aeolian morphologies is mostly useful to document major changes, yet, subtle changes, occurring in a period of days or months in scales of centimeters, are very difficult to detect in imagery. Interferometric Synthetic Aperture Radar (InSAR) is an imaging technique for measuring Earth's surface topography and deformation. InSAR images are produced by measuring the radar phase difference between two separated antennas that view the same surface area. Classical InSAR is based on high coherence between two images or more. The output (interferogram) can show subtle changes with an accuracy of several millimeters to centimeters. Very little work has been done on measuring or identifying the changes in dunes using InSAR. The reason is that dunes tend to be less coherent than firm, stable, surfaces. This research aims to demonstrate how interferometric decorrelation, or, coherence change detection, can be used for identifying dune instability. We hypothesize and demonstrate that the loss of radar coherence over time on dunes can be used as an indication of the dune's instability. When SAR images are acquired at sufficiently close intervals one can measure the time it takes to lose coherence and associate this time with geomorphic stability. To achieve our goals, the Nitzanim coastal dunes along the Mediterranean, 40 km south of Tel-Aviv, Israel, were chosen as a case study. The dunes in this area are of varying levels of stability and vegetation cover and have been monitored meteorologically, geomorphologically and

  19. Sequential Ensembles Tolerant to Synthetic Aperture Radar (SAR Soil Moisture Retrieval Errors

    Directory of Open Access Journals (Sweden)

    Ju Hyoung Lee

    2016-04-01

    Full Text Available Due to complicated and undefined systematic errors in satellite observation, data assimilation integrating model states with satellite observations is more complicated than field measurements-based data assimilation at a local scale. In the case of Synthetic Aperture Radar (SAR soil moisture, the systematic errors arising from uncertainties in roughness conditions are significant and unavoidable, but current satellite bias correction methods do not resolve the problems very well. Thus, apart from the bias correction process of satellite observation, it is important to assess the inherent capability of satellite data assimilation in such sub-optimal but more realistic observational error conditions. To this end, time-evolving sequential ensembles of the Ensemble Kalman Filter (EnKF is compared with stationary ensemble of the Ensemble Optimal Interpolation (EnOI scheme that does not evolve the ensembles over time. As the sensitivity analysis demonstrated that the surface roughness is more sensitive to the SAR retrievals than measurement errors, it is a scope of this study to monitor how data assimilation alters the effects of roughness on SAR soil moisture retrievals. In results, two data assimilation schemes all provided intermediate values between SAR overestimation, and model underestimation. However, under the same SAR observational error conditions, the sequential ensembles approached a calibrated model showing the lowest Root Mean Square Error (RMSE, while the stationary ensemble converged towards the SAR observations exhibiting the highest RMSE. As compared to stationary ensembles, sequential ensembles have a better tolerance to SAR retrieval errors. Such inherent nature of EnKF suggests an operational merit as a satellite data assimilation system, due to the limitation of bias correction methods currently available.

  20. Human monoclonal antibody as prophylaxis for SARS coronavirus infection in ferrets

    NARCIS (Netherlands)

    ter Meulen, Jan; Bakker, Alexander B. H.; van den Brink, Edward N.; Weverling, Gerrit J.; Martina, Byron E. E.; Haagmans, Bart L.; Kuiken, Thijs; de Kruif, John; Preiser, Wolfgang; Spaan, Willy; Gelderblom, Hans R.; Goudsmit, Jaap; Osterhaus, Albert D. M. E.

    2004-01-01

    SARS coronavirus continues to cause sporadic cases of severe acute respiratory syndrome (SARS) in China. No active or passive immunoprophylaxis for disease induced by SARS coronavirus is available. We investigated prophylaxis of SARS coronavirus infection with a neutralising human monoclonal

  1. Use of SAR data for proliferation monitoring

    International Nuclear Information System (INIS)

    Lafitte, M.; Robin, J.P.

    2013-01-01

    Synthetic Aperture Radar (SAR) is an active and coherent system. SAR images are complex data which contain both amplitude and phase information. The analysis of single SAR data required a very good experience and a good understanding of SAR geometry regarding layover, shadowing, texture and speckle. Image analyst can depicts and describes most of the facilities related to nuclear proliferation and weapons of mass destruction (WMD). The Amplitude Change Detection (ACD) technique consists of a combination of two or three SAR amplitude data acquired with similar orbit and frequency parameters on different dates. That technique provides a very good overview of the changes and particularly regarding vehicles activity and constructions ongoing within the area of interest over the monitoring period. One of the particularities of the SAR systems is to be coherent. The phase of a single image is not exploitable. Thus when two or more SAR data have been acquired with identical orbit and frequency parameters, the phases shift are indicators of changes such as structural changes, terrain subsidence or motion. The Multi-Temporal Coherence (MTC) product merged the two type of information previously detailed: the ACD and coherence analysis. It consists of the combination of two amplitude images and the corresponding coherence computed image. The MTC image may highlights changes between two states of a target which on the ACD analysis appeared unchanged. EUSC uses the difference interferometry techniques in order to estimate volumes that have changed between two acquisition dates. The paper is followed by the slides of the presentation. (A.C.)

  2. Estimating snow water equivalent (SWE) using interferometric synthetic aperture radar (InSAR)

    Science.gov (United States)

    Deeb, Elias J.

    Since the early 1990s, radar interferometry and interferometric synthetic aperture radar (InSAR) have been used extensively to measure changes in the Earth's surface. Previous research has presented theory for estimating snow properties, including potential for snow water equivalent (SWE) retrieval, using InSAR. The motivation behind using remote sensing to estimate SWE is to provide a more complete, continuous set of "observations" to assist in water management operations, climate change studies, and flood hazard forecasting. The research presented here primarily investigates the feasibility of using the InSAR technique at two different wavelengths (C-Band and L-Band) for SWE retrieval of dry snow within the Kuparuk watershed, North Slope, Alaska. Estimating snow distribution around meteorological towers on the coastal plain using a three-day repeat orbit of C-Band InSAR data was successful (Chapter 2). A longer wavelength L-band SAR is evaluated for SWE retrievals (Chapter 3) showing the ability to resolve larger snow accumulation events over a longer period of time. Comparisons of InSAR estimates and late spring manual sampling of SWE show a R2 = 0.61 when a coherence threshold is used to eliminate noisy SAR data. Qualitative comparisons with a high resolution digital elevation model (DEM) highlight areas of scour on windward slopes and areas of deposition on leeward slopes. When compared to a mid-winter transect of manually sampled snow depths, the InSAR SWE estimates yield a RMSE of 2.21cm when a bulk snow density is used and corrections for bracketing the satellite acquisition timing is performed. In an effort to validate the interaction of radar waves with a snowpack, the importance of the "dry snow" assumption for the estimation of SWE using InSAR is tested with an experiment in Little Cottonwood Canyon, Alta, Utah (Chapter 5). Snow wetness is shown to have a significant effect on the velocity of propagation within the snowpack. Despite the radar

  3. A model for the dynamic nuclear/nucleolar/cytoplasmic trafficking of the porcine reproductive and respiratory syndrome virus (PRRSV) nucleocapsid protein based on live cell imaging

    International Nuclear Information System (INIS)

    You, Jae-Hwan; Howell, Gareth; Pattnaik, Asit K.; Osorio, Fernando A.; Hiscox, Julian A.

    2008-01-01

    Porcine reproductive and respiratory syndrome virus (PRRSV), an arterivirus, in common with many other positive strand RNA viruses, encodes a nucleocapsid (N) protein which can localise not only to the cytoplasm but also to the nucleolus in virus-infected cells and cells over-expressing N protein. The dynamic trafficking of positive strand RNA virus nucleocapsid proteins and PRRSV N protein in particular between the cytoplasm and nucleolus is unknown. In this study live imaging of permissive and non-permissive cell lines, in conjunction with photo-bleaching (FRAP and FLIP), was used to investigate the trafficking of fluorescent labeled (EGFP) PRRSV-N protein. The data indicated that EGFP-PRRSV-N protein was not permanently sequestered to the nucleolus and had equivalent mobility to cellular nucleolar proteins. Further the nuclear import of N protein appeared to occur faster than nuclear export, which may account for the observed relative distribution of N protein between the cytoplasm and the nucleolus

  4. TerraSAR-X InSAR multipass analysis on Venice, Italy)

    Science.gov (United States)

    Nitti, D. O.; Nutricato, R.; Bovenga, F.; Refice, A.; Chiaradia, M. T.; Guerriero, L.

    2009-09-01

    The TerraSAR-X (copyright) mission, launched in 2007, carries a new X-band Synthetic Aperture Radar (SAR) sensor optimally suited for SAR interferometry (InSAR), thus allowing very promising application of InSAR techniques for the risk assessment on areas with hydrogeological instability and especially for multi-temporal analysis, such as Persistent Scatterer Interferometry (PSI) techniques, originally developed at Politecnico di Milano. The SPINUA (Stable Point INterferometry over Unurbanised Areas) technique is a PSI processing methodology which has originally been developed with the aim of detection and monitoring of coherent PS targets in non or scarcely-urbanized areas. The main goal of the present work is to describe successful applications of the SPINUA PSI technique in processing X-band data. Venice has been selected as test site since it is in favorable settings for PSI investigations (urban area containing many potential coherent targets such as buildings) and in view of the availability of a long temporal series of TerraSAR-X stripmap acquisitions (27 scenes in all). The Venice Lagoon is affected by land sinking phenomena, whose origins are both natural and man-induced. The subsidence of Venice has been intensively studied for decades by determining land displacements through traditional monitoring techniques (leveling and GPS) and, recently, by processing stacks of ERS/ENVISAT SAR data. The present work is focused on an independent assessment of application of PSI techniques to TerraSAR-X stripmap data for monitoring the stability of the Venice area. Thanks to its orbital repeat cycle of only 11 days, less than a third of ERS/ENVISAT C-band missions, the maximum displacement rate that can be unambiguously detected along the Line-of-Sight (LOS) with TerraSAR-X SAR data through PSI techniques is expected to be about twice the corresponding value of ESA C-band missions, being directly proportional to the sensor wavelength and inversely proportional to the

  5. Effects of nucleic acid local structure and magnesium ions on minus-strand transfer mediated by the nucleic acid chaperone activity of HIV-1 nucleocapsid protein

    OpenAIRE

    Wu, Tiyun; Heilman-Miller, Susan L.; Levin, Judith G.

    2007-01-01

    HIV-1 nucleocapsid protein (NC) is a nucleic acid chaperone, which is required for highly specific and efficient reverse transcription. Here, we demonstrate that local structure of acceptor RNA at a potential nucleation site, rather than overall thermodynamic stability, is a critical determinant for the minus-strand transfer step (annealing of acceptor RNA to (−) strong-stop DNA followed by reverse transcriptase (RT)-catalyzed DNA extension). In our system, destabilization of a stem-loop stru...

  6. Hantaan Virus Nucleocapsid Protein Binds to Importin alpha Proteins and Inhibits Tumor Necrosis Factor Alpha-Induced Activation of Nuclear Factor Kappa B

    Science.gov (United States)

    2008-11-19

    Microbiology . All Rights Reserved. Hantaan Virus Nucleocapsid Protein Binds to Importin Proteins and Inhibits Tumor Necrosis Factor Alpha-Induced...Division, U.S. Army Medical Research Institute of Infectious Diseases, Fort Detrick, Maryland 21702,1 and Department of Microbiology , Mount Sinai...34–36. 32. Prescott , J., C. Ye, G. Sen, and B. Hjelle. 2005. Induction of innate immune response genes by Sin Nombre hantavirus does not require

  7. In Vitro-Assembled Alphavirus Core-Like Particles Maintain a Structure Similar to That of Nucleocapsid Cores in Mature Virus

    OpenAIRE

    Mukhopadhyay, Suchetana; Chipman, Paul R.; Hong, Eunmee M.; Kuhn, Richard J.; Rossmann, Michael G.

    2002-01-01

    In vitro-assembled core-like particles produced from alphavirus capsid protein and nucleic acid were studied by cryoelectron microscopy. These particles were found to have a diameter of 420 Å with 240 copies of the capsid protein arranged in a T=4 icosahedral surface lattice, similar to the nucleocapsid core in mature virions. However, when the particles were subjected to gentle purification procedures, they were damaged, preventing generation of reliable structural information. Similarly, pu...

  8. Long term landslide monitoring with Ground Based SAR

    Science.gov (United States)

    Monserrat, Oriol; Crosetto, Michele; Luzi, Guido; Gili, Josep; Moya, Jose; Corominas, Jordi

    2014-05-01

    In the last decade, Ground-Based (GBSAR) has proven to be a reliable microwave Remote Sensing technique in several application fields, especially for unstable slopes monitoring. GBSAR can provide displacement measurements over few squared kilometres areas and with a very high spatial and temporal resolution. This work is focused on the use of GBSAR technique for long term landslide monitoring based on a particular data acquisition configuration, which is called discontinuous GBSAR (D-GBSAR). In the most commonly used GBSAR configuration, the radar is left installed in situ, acquiring data periodically, e.g. every few minutes. Deformations are estimated by processing sets of GBSAR images acquired during several weeks or months, without moving the system. By contrast, in the D-GBSAR the radar is installed and dismounted at each measurement campaign, revisiting a given site periodically. This configuration is useful to monitor slow deformation phenomena. In this work, two alternative ways for exploiting the D-GBSAR technique will be presented: the DInSAR technique and the Amplitude based Technique. The former is based on the exploitation of the phase component of the acquired SAR images and it allows providing millimetric precision on the deformation estimates. However, this technique presents several limitations like the reduction of measurable points with an increase in the period of observation, the ambiguous nature of the phase measurements, and the influence of the atmospheric phase component that can make it non applicable in some cases, specially when working in natural environments. The second approach, that is based on the use of the amplitude component of GB-SAR images combined with a image matching technique, will allow the estimation of the displacements over specific targets avoiding two of the limitations commented above: the phase unwrapping and atmosphere contribution but reducing the deformation measurement precision. Two successful examples of D

  9. Stormwater runoff plumes in the Southern California Bight: A comparison study with SAR and MODIS imagery.

    Science.gov (United States)

    Holt, Benjamin; Trinh, Rebecca; Gierach, Michelle M

    2017-05-15

    Stormwater runoff is the largest source of pollution in the Southern California Bight (SCB), resulting from untreated runoff and pollutants from urban watersheds entering the coastal waters after rainstorms. We make use of both satellite SAR and MODIS-Aqua ocean color imagery to examine two different components of runoff plumes, the surface slick and the sediment discharge. We expand on earlier satellite SAR studies by examining an extensive collection of multi-platform SAR imagery, spanning from 1992 to 2014, that provides a more comprehensive view of the plume surface slick characteristics, illustrated with distribution maps of the extent and flow direction of the plumes. The SAR-detected surface plumes are compared with coincident rain and runoff measurements, and with available measured shoreline fecal bacteria loads. We illustrate differences in the detection of SAR surface plumes with the sediment-related discharge plumes derived from MODIS imagery. A conceptual satellite stormwater runoff monitoring approach is presented. Copyright © 2017 Elsevier Ltd. All rights reserved.

  10. Development and Evaluation of Science and Technology Education Program Using Interferometric SAR

    Science.gov (United States)

    Ito, Y.; Ikemitsu, H.; Nango, K.

    2016-06-01

    This paper proposes a science and technology education program to teach junior high school students to measure terrain changes by using interferometric synthetic aperture radar (SAR). The objectives of the proposed program are to evaluate and use information technology by performing SAR data processing in order to measure ground deformation, and to incorporate an understanding of Earth sciences by analyzing interferometric SAR processing results. To draft the teaching guidance plan for the developed education program, this study considers both science and technology education. The education program was used in a Japanese junior high school. An educational SAR processor developed by the authors and the customized Delft object-oriented radar interferometric software package were employed. Earthquakes as diastrophism events were chosen as practical teaching materials. The selected events indicate clear ground deformation in differential interferograms with high coherence levels. The learners were able to investigate the ground deformations and disasters caused by the events. They interactively used computers and became skilled at recognizing the knowledge and techniques of information technology, and then they evaluated the technology. Based on the results of pre- and post-questionnaire surveys and self-evaluation by the learners, it was clarified that the proposed program was applicable for junior high school education, and the learners recognized the usefulness of Earth observation technology by using interferometric SAR. The usefulness of the teaching materials in the learning activities was also shown through the practical teaching experience.

  11. Autographa californica multiple nucleopolyhedrovirus ac66 is required for the efficient egress of nucleocapsids from the nucleus, general synthesis of preoccluded virions and occlusion body formation

    International Nuclear Information System (INIS)

    Ke Jianhao; Wang Jinwen; Deng Riqiang; Wang Xunzhang

    2008-01-01

    Although orf66 (ac66) of Autographa californica multiple nucleopolyhedrovirus (AcMNPV) is conserved in all sequenced lepidopteran baculovirus genomes, its function is not known. This paper describes generation of an ac66 knockout AcMNPV bacmid mutant and analyses of the influence of ac66 deletion on the virus replication in Sf-9 cells so as to determine the role of ac66 in the viral life cycle. Results indicated that budded virus (BV) yields were reduced over 99% in ac66-null mutant infected cells in comparison to that in wild-type virus infected cells. Optical microscopy revealed that occlusion body synthesis was significantly reduced in the ac66 knockout bacmid-transfected cells. In addition, ac66 deletion interrupted preoccluded virion synthesis. The mutant phenotype was rescued by an ac66 repair bacmid. On the other hand, real-time PCR analysis indicated that ac66 deletion did not affect the levels of viral DNA replication. Electron microscopy revealed that ac66 is not essential for nucleocapsid assembly, but for the efficient transport of nucleocapsids from the nucleus to the cytoplasm. These results suggested that ac66 plays an important role for the efficient exit of nucleocapsids from the nucleus to the cytoplasm for BV synthesis as well as for preoccluded virion and occlusion synthesis

  12. Accelerated Scientific InSAR Processing, Phase I

    Data.gov (United States)

    National Aeronautics and Space Administration — Neva Ridge Technologies proposes to develop a suite of software tools for the analysis of SAR and InSAR data, focused on having a robust and adopted capability well...

  13. Simultaneous Observation Data of GB-SAR/PiSAR to Detect Flooding in an Urban Area

    Directory of Open Access Journals (Sweden)

    Manabu Watanabe

    2010-01-01

    Full Text Available We analyzed simultaneous observation data with ground-based synthetic aperture radar (GB-SAR and airborne SAR (PiSAR over a flood test site at which a simple house was constructed in a field. The PiSAR σ∘ under flood condition was 0.9 to 3.4 dB higher than that under nonflood condition. GB-SAR gives high spatial resolution as we could identify a single scattering component and a double bounce component from the house. GB-SAR showed that the σ∘ difference between the flooding and nonflooding conditions came from the double bounce scattering. We also confirm that the entropy is a sensitive parameter in the eigenvalue decomposition parameters, if the scattering process is dominated by the double bounce scattering. We conclude that σ∘ and entropy are a good parameter to be used to detect flooding, not only in agricultural and forest regions, but also in urban areas. We also conclude that GB-SAR is a powerful tool to supplement satellite and airborne observation, which has a relatively low spatial resolution.

  14. Simultaneous Observation Data of GB-SAR/PiSAR to Detect Flooding in an Urban Area

    Directory of Open Access Journals (Sweden)

    Shimada Masanobu

    2010-01-01

    Full Text Available Abstract We analyzed simultaneous observation data with ground-based synthetic aperture radar (GB-SAR and airborne SAR (PiSAR over a flood test site at which a simple house was constructed in a field. The PiSAR under flood condition was 0.9 to 3.4 dB higher than that under nonflood condition. GB-SAR gives high spatial resolution as we could identify a single scattering component and a double bounce component from the house. GB-SAR showed that the difference between the flooding and nonflooding conditions came from the double bounce scattering. We also confirm that the entropy is a sensitive parameter in the eigenvalue decomposition parameters, if the scattering process is dominated by the double bounce scattering. We conclude that and entropy are a good parameter to be used to detect flooding, not only in agricultural and forest regions, but also in urban areas. We also conclude that GB-SAR is a powerful tool to supplement satellite and airborne observation, which has a relatively low spatial resolution.

  15. Infrastructure monitoring with spaceborne SAR sensors

    CERN Document Server

    ANGHEL, ANDREI; CACOVEANU, REMUS

    2017-01-01

    This book presents a novel non-intrusive infrastructure monitoring technique based on the detection and tracking of scattering centers in spaceborne SAR images. The methodology essentially consists of refocusing each available SAR image on an imposed 3D point cloud associated to the envisaged infrastructure element and identifying the reliable scatterers to be monitored by means of four dimensional (4D) tomography. The methodology described in this book provides a new perspective on infrastructure monitoring with spaceborne SAR images, is based on a standalone processing chain, and brings innovative technical aspects relative to conventional approaches. The book is intended primarily for professionals and researchers working in the area of critical infrastructure monitoring by radar remote sensing.

  16. There is no one-size-fits-all product for InSAR; on the inclusion of contextual information for geodetically-proof InSAR data products

    Science.gov (United States)

    Hanssen, R. F.

    2017-12-01

    In traditional geodesy, one is interested in determining the coordinates, or the change in coordinates, of predefined benchmarks. These benchmarks are clearly identifiable and are especially established to be representative of the signal of interest. This holds, e.g., for leveling benchmarks, for triangulation/trilateration benchmarks, and for GNSS benchmarks. The desired coordinates are not identical to the basic measurements, and need to be estimated using robust estimation procedures, where the stochastic nature of the measurements is taken into account. For InSAR, however, the `benchmarks' are not predefined. In fact, usually we do not know where an effective benchmark is located, even though we can determine its dynamic behavior pretty well. This poses several significant problems. First, we cannot describe the quality of the measurements, unless we already know the dynamic behavior of the benchmark. Second, if we don't know the quality of the measurements, we cannot compute the quality of the estimated parameters. Third, rather harsh assumptions need to be made to produce a result. These (usually implicit) assumptions differ between processing operators and the used software, and are severely affected by the amount of available data. Fourth, the `relative' nature of the final estimates is usually not explicitly stated, which is particularly problematic for non-expert users. Finally, whereas conventional geodesy applies rigorous testing to check for measurement or model errors, this is hardly ever done in InSAR-geodesy. These problems make it rather impossible to provide a precise, reliable, repeatable, and `universal' InSAR product or service. Here we evaluate the requirements and challenges to move towards InSAR as a geodetically-proof product. In particular this involves the explicit inclusion of contextual information, as well as InSAR procedures, standards and a technical protocol, supported by the International Association of Geodesy and the

  17. PRF Ambiguity Detrmination for Radarsat ScanSAR System

    Science.gov (United States)

    Jin, Michael Y.

    1998-01-01

    PRF ambiguity is a potential problem for a spaceborne SAR operated at high frequencies. For a strip mode SAR, there were several approaches to solve this problem. This paper, however, addresses PRF ambiguity determination algorithms suitable for a burst mode SAR system such as the Radarsat ScanSAR. The candidate algorithms include the wavelength diversity algorithm, range look cross correlation algorithm, and multi-PRF algorithm.

  18. Similarities and differences in the nucleic acid chaperone activity of HIV-2 and HIV-1 nucleocapsid proteins in vitro.

    Science.gov (United States)

    Pachulska-Wieczorek, Katarzyna; Stefaniak, Agnieszka K; Purzycka, Katarzyna J

    2014-07-03

    The nucleocapsid domain of Gag and mature nucleocapsid protein (NC) act as nucleic acid chaperones and facilitate folding of nucleic acids at critical steps of retroviral replication cycle. The basic N-terminus of HIV-1 NC protein was shown most important for the chaperone activity. The HIV-2 NC (NCp8) and HIV-1 NC (NCp7) proteins possess two highly conserved zinc fingers, flanked by basic residues. However, the NCp8 N-terminal domain is significantly shorter and contains less positively charged residues. This study characterizes previously unknown, nucleic acid chaperone activity of the HIV-2 NC protein. We have comparatively investigated the in vitro nucleic acid chaperone properties of the HIV-2 and HIV-1 NC proteins. Using substrates derived from the HIV-1 and HIV-2 genomes, we determined the ability of both proteins to chaperone nucleic acid aggregation, annealing and strand exchange in duplex structures. Both NC proteins displayed comparable, high annealing activity of HIV-1 TAR DNA and its complementary nucleic acid. Interesting differences between the two NC proteins were discovered when longer HIV substrates, particularly those derived from the HIV-2 genome, were used in chaperone assays. In contrast to NCp7, NCp8 weakly facilitates annealing of HIV-2 TAR RNA to its complementary TAR (-) DNA. NCp8 is also unable to efficiently stimulate tRNALys3 annealing to its respective HIV-2 PBS motif. Using truncated NCp8 peptide, we demonstrated that despite the fact that the N-terminus of NCp8 differs from that of NCp7, this domain is essential for NCp8 activity. Our data demonstrate that the HIV-2 NC protein displays reduced nucleic acid chaperone activity compared to that of HIV-1 NC. We found that NCp8 activity is limited by substrate length and stability to a greater degree than that of NCp7. This is especially interesting in light of the fact that the HIV-2 5'UTR is more structured than that of HIV-1. The reduced chaperone activity observed with NCp8 may

  19. SARS Risk Perception, Knowledge, Precautions, and Information Sources, the Netherlands

    Science.gov (United States)

    Aro, Arja R.; Oenema, Anke; de Zwart, Onno; Richardus, Jan Hendrik; Bishop, George D.

    2004-01-01

    Severe acute respiratory syndrome (SARS)–related risk perceptions, knowledge, precautionary actions, and information sources were studied in the Netherlands during the 2003 SARS outbreak. Although respondents were highly aware of the SARS outbreak, the outbreak did not result in unnecessary precautionary actions or fears. PMID:15496256

  20. Science data collection with polarimetric SAR

    DEFF Research Database (Denmark)

    Dall, Jørgen; Woelders, Kim; Madsen, Søren Nørvang

    1996-01-01

    Discusses examples on the use of polarimetric SAR in a number of Earth science studies. The studies are presently being conducted by the Danish Center for Remote Sensing. A few studies of the European Space Agency's EMAC programme are also discussed. The Earth science objectives are presented......, and the potential of polarimetric SAR is discussed and illustrated with data collected by the Danish airborne EMISAR system during a number of experiments in 1994 and 1995. The presentation will include samples of data acquired for the different studies...

  1. Satellite sar detection of hurricane helene (2006)

    DEFF Research Database (Denmark)

    Ju, Lian; Cheng, Yongcun; Xu, Qing

    2013-01-01

    In this paper, the wind structure of hurricane Helene (2006) over the Atlantic Ocean is investigated from a C-band RADARSAT-1 synthetic aperture radar (SAR) image acquired on 20 September 2006. First, the characteristics, e.g., the center, scale and area of the hurricane eye (HE) are determined. ...... observations from the stepped frequency microwave radiometer (SFMR) on NOAA P3 aircraft. All the results show the capability of hurricane monitoring by satellite SAR. Copyright © 2013 by the International Society of Offshore and Polar Engineers (ISOPE)....

  2. The planned Alaska SAR Facility - An overview

    Science.gov (United States)

    Carsey, Frank; Weeks, Wilford

    1987-01-01

    The Alaska SAR Facility (ASF) is described in an overview fashion. The facility consists of three major components, a Receiving Ground System, a SAR Processing System and an Analysis and Archiving System; the ASF Program also has a Science Working Team and the requisite management and operations systems. The ASF is now an approved and fully funded activity; detailed requirements and science background are presented for the facility to be implemented for data from the European ERS-1, the Japanese ERS-1 and Radarsat.

  3. Geologic mapping in Greenland with polarimetric SAR

    DEFF Research Database (Denmark)

    Dall, Jørgen; Madsen, Søren Nørvang; Brooks, C. K.

    1995-01-01

    The application of synthetic aperture radar (SAR) for geologic mapping in Greenland is investigated by the Danish Center for Remote Sensing (DCRS) in co-operation with the Danish Lithosphere Centre (DLC). In 1994 a pilot project was conducted in East Greenland. The Danish airborne SAR, EMISAR...... mapping is complicated by an extreme topography leading to massive shadowing, foreshortening and layover. An artifact characterised by high cross-polarisation is observed behind many sharp mountain ridges. A multi-reflection hypothesis has been investigated without finding the ultimate proof...

  4. The humoral immune response to recombinant nucleocapsid antigen of canine distemper virus in dogs vaccinated with attenuated distemper virus or DNA encoding the nucleocapsid of wild-type virus.

    Science.gov (United States)

    Griot-Wenk, M E; Cherpillod, P; Koch, A; Zurbriggen, R; Bruckner, L; Wittek, R; Zurbriggen, A

    2001-06-01

    This study compared the humoral immune response against the nucleocapsid-(N) protein of canine distemper virus (CDV) of dogs vaccinated with a multivalent vaccine against parvo-, adeno-, and parainfluenza virus and leptospira combined with either the attenuated CDV Onderstepoort strain (n = 15) or an expression plasmid containing the N-gene of CDV (n = 30). The vaccinations were applied intramuscularly three times at 2-week intervals beginning at the age of 6 weeks. None of the pre-immune sera recognized the recombinant N-protein, confirming the lack of maternal antibodies at this age. Immunization with DNA vaccine for CDV resulted in positive serum N-specific IgG response. However, their IgG (and IgA) titres were lower than those of CDV-vaccinated dogs. Likewise, DNA-vaccinated dogs did not show an IgM peak. There was no increase in N-specific serum IgE titres in either group. Serum titres to the other multivalent vaccine components were similar in both groups.

  5. Detecting Landscape Disturbance at the Nasca Lines Using SAR Data Collected from Airborne and Satellite Platforms

    Directory of Open Access Journals (Sweden)

    Douglas C. Comer

    2017-10-01

    Full Text Available We used synthetic aperture radar (SAR data collected over Peru’s Lines and Geoglyphs of the Nasca and Palpa World Heritage Site to detect and measure landscape disturbance threatening world-renowned archaeological features and ecosystems. We employed algorithms to calculate correlations between pairs of SAR returns, collected at different times, and generate correlation images. Landscape disturbances even on the scale of pedestrian travel are discernible in correlation images generated from airborne, L-band SAR. Correlation images derived from C-band SAR data collected by the European Space Agency’s Sentinel-1 satellites also provide detailed landscape change information. Because the two Sentinel-1 satellites together have a repeat pass interval that can be as short as six days, products derived from their data can not only provide information on the location and degree of ground disturbance, but also identify a time window of about one to three weeks during which disturbance must have occurred. For Sentinel-1, this does not depend on collecting data in fine-beam modes, which generally sacrifice the size of the area covered for a higher spatial resolution. We also report on pixel value stretching for a visual analysis of SAR data, quantitative assessment of landscape disturbance, and statistical testing for significant landscape change.

  6. Time domain SAR raw data simulation using CST and image focusing of 3D objects

    Science.gov (United States)

    Saeed, Adnan; Hellwich, Olaf

    2017-10-01

    This paper presents the use of a general purpose electromagnetic simulator, CST, to simulate realistic synthetic aperture radar (SAR) raw data of three-dimensional objects. Raw data is later focused in MATLAB using range-doppler algorithm. Within CST Microwave Studio a replica of TerraSAR-X chirp signal is incident upon a modeled Corner Reflector (CR) whose design and material properties are identical to that of the real one. Defining mesh and other appropriate settings reflected wave is measured at several distant points within a line parallel to the viewing direction. This is analogous to an array antenna and is synthesized to create a long aperture for SAR processing. The time domain solver in CST is based on the solution of differential form of Maxwells equations. Exported data from CST is arranged into a 2-d matrix of axis range and azimuth. Hilbert transform is applied to convert the real signal to complex data with phase information. Range compression, range cell migration correction (RCMC), and azimuth compression are applied in time domain to obtain the final SAR image. This simulation can provide valuable information to clarify which real world objects cause images suitable for high accuracy identification in the SAR images.

  7. SARS knowledge, perceptions, and behaviors: a comparison between Finns and the Dutch during the SARS outbreak in 2003

    NARCIS (Netherlands)

    Vartti, A.M.; Oenema, A.; Schreck, M.; Uutela, A.; Zwart, de O.; Brug, J.; Aro, A.R.

    2009-01-01

    BACKGROUND: The SARS outbreak served to test both local and international outbreak management and risk communication practices. PURPOSE: The study compares SARS knowledge, perceptions, behaviors, and information between Finns and the Dutch during the SARS outbreak in 2003. METHOD: The participants

  8. Utility of Characterizing and Monitoring Suspected Underground Nuclear Sites with VideoSAR

    Science.gov (United States)

    Dauphin, S. M.; Yocky, D. A.; Riley, R.; Calloway, T. M.; Wahl, D. E.

    2016-12-01

    Sandia National Laboratories proposed using airborne synthetic aperture RADAR (SAR) collected in VideoSAR mode to characterize the Underground Nuclear Explosion Signature Experiment (UNESE) test bed site at the Nevada National Security Site (NNSS). The SNL SAR collected airborne, Ku-band (16.8 GHz center frequency), 0.2032 meter ground resolution over NNSS in August 2014 and X-band (9.6 GHz), 0.1016 meter ground resolution fully-polarimetric SAR in April 2015. This paper reports the findings of processing and exploiting VideoSAR for creating digital elevation maps, detecting cultural artifacts and exploiting full-circle polarimetric signatures. VideoSAR collects a continuous circle of phase history data, therefore, imagery can be formed over the 360-degrees of the site. Since the Ku-band VideoSAR had two antennas suitable for interferometric digital elevation mapping (DEM), DEMs could be generated over numerous aspect angles, filling in holes created by targets with height by imaging from all sides. Also, since the X-band VideoSAR was fully-polarimetric, scattering signatures could be gleaned from all angles also. Both of these collections can be used to find man-made objects and changes in elevation that might indicate testing activities. VideoSAR provides a unique, coherent measure of ground objects allowing one to create accurate DEMS, locate man-made objects, and identify scattering signatures via polarimetric exploitation. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000. The authors would like to thank the National Nuclear Security Administration, Defense Nuclear Nonproliferation Research and Development, for sponsoring this work. We would also like to thank the Underground Nuclear Explosion Signatures Experiment team, a multi

  9. A time series deformation estimation in the NW Himalayas using SBAS InSAR technique

    Science.gov (United States)

    Kumar, V.; Venkataraman, G.

    2012-12-01

    A time series land deformation studies in north western Himalayan region has been presented in this study. Synthetic aperture radar (SAR) interferometry (InSAR) is an important tool for measuring the land displacement caused by different geological processes [1]. Frequent spatial and temporal decorrelation in the Himalayan region is a strong impediment in precise deformation estimation using conventional interferometric SAR approach. In such cases, advanced DInSAR approaches PSInSAR as well as Small base line subset (SBAS) can be used to estimate earth surface deformation. The SBAS technique [2] is a DInSAR approach which uses a twelve or more number of repeat SAR acquisitions in different combinations of a properly chosen data (subsets) for generation of DInSAR interferograms using two pass interferometric approach. Finally it leads to the generation of mean deformation velocity maps and displacement time series. Herein, SBAS algorithm has been used for time series deformation estimation in the NW Himalayan region. ENVISAT ASAR IS2 swath data from 2003 to 2008 have been used for quantifying slow deformation. Himalayan region is a very active tectonic belt and active orogeny play a significant role in land deformation process [3]. Geomorphology in the region is unique and reacts to the climate change adversely bringing with land slides and subsidence. Settlements on the hill slopes are prone to land slides, landslips, rockslides and soil creep. These hazardous features have hampered the over all progress of the region as they obstruct the roads and flow of traffic, break communication, block flowing water in stream and create temporary reservoirs and also bring down lot of soil cover and thus add enormous silt and gravel to the streams. It has been observed that average deformation varies from -30.0 mm/year to 10 mm/year in the NW Himalayan region . References [1] Massonnet, D., Feigl, K.L.,Rossi, M. and Adragna, F. (1994) Radar interferometry mapping of

  10. Design and realization of an active SAR calibrator for TerraSAR-X

    Science.gov (United States)

    Dummer, Georg; Lenz, Rainer; Lutz, Benjamin; Kühl, Markus; Müller-Glaser, Klaus D.; Wiesbeck, Werner

    2005-10-01

    TerraSAR-X is a new earth observing satellite which will be launched in spring 2006. It carries a high resolution X-band SAR sensor. For high image data quality, accurate ground calibration targets are necessary. This paper describes a novel system concept for an active and highly integrated, digitally controlled SAR system calibrator. A total of 16 active transponder and receiver systems and 17 receiver only systems will be fabricated for a calibration campaign. The calibration units serve for absolute radiometric calibration of the SAR image data. Additionally, they are equipped with an extra receiver path for two dimensional satellite antenna pattern recognition. The calibrator is controlled by a dedicated digital Electronic Control Unit (ECU). The different voltages needed by the calibrator and the ECU are provided by the third main unit called Power Management Unit (PMU).

  11. Critical epitopes in the nucleocapsid protein of SFTS virus recognized by a panel of SFTS patients derived human monoclonal antibodies.

    Directory of Open Access Journals (Sweden)

    Li Yu

    Full Text Available BACKGROUND: SFTS virus (SFTSV is a newly discovered pathogen to cause severe fever with thrombocytopenia syndrome (SFTS in human. Successful control of SFTSV epidemic requires better understanding of the antigen target in humoral immune responses to the new bunyavirus infection. METHODOLOGY/PRINCIPAL FINDINGS: We have generated a combinatorial Fab antibody phage library from two SFTS patients recovered from SFTSV infection. To date, 94 unique human antibodies have been generated and characterized from over 1200 Fab antibody clones obtained by screening the library with SFTS purified virions. All those monoclonal antibodies (MAbs recognized the nucleocapsid (N protein of SFTSV while none of them were reactive to the viral glycoproteins Gn or Gc. Furthermore, over screening 1000 mouse monoclonal antibody clones derived from SFTSV virions immunization, 462 clones reacted with N protein, while only 16 clones were reactive to glycoprotein. Furthermore, epitope mapping of SFTSV N protein was performed through molecular simulation, site mutation and competitive ELISA, and we found that at least 4 distinct antigenic epitopes within N protein were recognized by those human and mouse MAbs, in particular mutation of Glu10 to Ala10 abolished or significantly reduced the binding activity of nearly most SFTS patients derived MAbs. CONCLUSIONS/SIGNIFICANCE: The large number of human recombinant MAbs derived from SFTS patients recognized the viral N protein indicated the important role of the N protein in humoral responses to SFTSV infection, and the critical epitopes we defined in this study provided molecular basis for detection and diagnosis of SFTSV infection.

  12. Biological characterization and variability of the nucleocapsid protein gene of Groundnut bud necrosis virus isolates infecting pea from India

    Directory of Open Access Journals (Sweden)

    Mohammad AKRAM

    2012-09-01

    Full Text Available A disease of pea characterized by browning in veins, leaves and stems, mostly in growing tips, and brown circular spots on pods, was recorded in four districts of Uttar Pradesh, India. The causal agent of this disease was detected by reverse transcription-polymerase chain reaction (RT-PCR using primers pair HRP 26/HRP 28 and identified as Groundnut bud necrosis virus (GBNV on the basis of nucleocapsid protein (NP gene sequence. Virus isolates from Bareilly (BRY, Kanpur (KNP, Udham Singh Nagar (USN and Shahjahanpur (SJP were designated as GBNV-[Pea_BRY], GBNV-[Pea_KNP], GBNV-[Pea_USN] and GBNV-[Pea_SJP] and their NP genes sequenced. The sequence data of each isolate were deposited at NCBI database (JF281101-JF281104. The complete nucleotide sequence of the NP genes of all the GBNV isolates had a single open reading frame of 831 nucleotides and 276 amino acids. The isolates had among them 2% variability at amino acid level and 2‒3 variability at nucleotide level, but had variability with other GBNV isolates of fabaceous hosts in the range of 0‒6% at amino acid level and 1‒8% at nucleotide level. Though this variation in nucleotide sequences of GBNV isolates from fabaceous hosts is within the limits of species demarcation for tospoviruses, formation of a separate cluster within the GBNV isolates indicates the possibility of distinct variants in GBNV.

  13. Identification of a novel canine distemper virus B-cell epitope using a monoclonal antibody against nucleocapsid protein.

    Science.gov (United States)

    Yi, Li; Cheng, Yuening; Zhang, Miao; Cao, Zhigang; Tong, Mingwei; Wang, Jianke; Zhao, Hang; Lin, Peng; Cheng, Shipeng

    2016-02-02

    Canine distemper virus (CDV) is a member of the genus Morbillivirus within the family Paramyxoviridae and has caused severe economic losses in China. Nucleocapsid protein (N) is the major structural viral protein and can be used to diagnose CDV and other morbilliviruses. In this study, a specific monoclonal antibody, 1N8, was produced against the CDV N protein (amino acids 277-471). A linear N protein epitope was identified by subjecting a series of partially overlapping synthesized peptides to enzyme-linked immunosorbent assay (ELISA) analysis. The results indicated that (350)LNFGRSYFDPA(360) was the minimal linear epitope that could be recognized by mAb 1N8. ELISA assays revealed that mouse anti-CDV sera could also recognize the minimal linear epitope. Alignment analysis of the amino acid sequences indicated that the epitope was highly conserved among CDV strains. Furthermore, the epitope was conserved among other morbilliviruses, which was confirmed with PRRV using western blotting. Taken together, the results of this study may have potential applications in the development of suitable diagnostic techniques for CDV or other morbilliviruses. Copyright © 2015 Elsevier B.V. All rights reserved.

  14. The prion protein has RNA binding and chaperoning properties characteristic of nucleocapsid protein NCP7 of HIV-1.

    Science.gov (United States)

    Gabus, C; Derrington, E; Leblanc, P; Chnaiderman, J; Dormont, D; Swietnicki, W; Morillas, M; Surewicz, W K; Marc, D; Nandi, P; Darlix, J L

    2001-06-01

    Transmissible spongiform encephalopathies are fatal neurodegenerative diseases associated with the accumulation of a protease-resistant form of the prion protein (PrP). Although PrP is conserved in vertebrates, its function remains to be identified. In vitro PrP binds large nucleic acids causing the formation of nucleoprotein complexes resembling human immunodeficiency virus type 1 (HIV-1) nucleocapsid-RNA complexes and in vivo MuLV replication accelerates the scrapie infectious process, suggesting possible interactions between retroviruses and PrP. Retroviruses, including HIV-1 encode a major nucleic acid binding protein (NC protein) found within the virus where 2000 NC protein molecules coat the dimeric genome. NC is required in virus assembly and infection to chaperone RNA dimerization and packaging and in proviral DNA synthesis by reverse transcriptase (RT). In HIV-1, 5'-leader RNA/NC interactions appear to control these viral processes. This prompted us to compare and contrast the interactions of human and ovine PrP and HIV-1 NCp7 with HIV-1 5'-leader RNA. Results show that PrP has properties characteristic of NCp7 with respect to viral RNA dimerization and proviral DNA synthesis by RT. The NC-like properties of huPrP map to the N-terminal region of huPrP. Interestingly, PrP localizes in the membrane and cytoplasm of PrP-expressing cells. These findings suggest that PrP is a multifunctional protein possibly participating in nucleic acid metabolism.

  15. Validation of a commercially available indirect ELISA using a nucleocapside recombinant protein for detection of Schmallenberg virus antibodies.

    Directory of Open Access Journals (Sweden)

    Emmanuel Bréard

    Full Text Available A newly developed Enzym Like Immuno Sorbant Assay (ELISA based on the recombinant nucleocapsid protein (N of Schmallenberg virus (SBV was evaluated and validated for the detection of SBV-specific IgG antibodies in ruminant sera by three European Reference Laboratories. Validation data sets derived from sheep, goat and bovine sera collected in France and Germany (n = 1515 in 2011 and 2012 were categorized according to the results of a virus neutralization test (VNT or an indirect immuno-fluorescence assay (IFA. The specificity was evaluated with 1364 sera from sheep, goat and bovine collected in France and Belgium before 2009. Overall agreement between VNT and ELISA was 98.9% and 98.3% between VNT and IFA, indicating a very good concordance between the different techniques. Although cross-reactions with other Orthobunyavirus from the Simbu serogroup viruses might occur, it is a highly sensitive, specific and robust ELISA-test validated to detect anti-SBV antibodies. This test can be applied for SBV sero-diagnostics and disease-surveillance studies in ruminant species in Europe.

  16. Non-Cooperative Bistatic SAR Clock Drift Compensation for Tomographic Acquisitions

    Directory of Open Access Journals (Sweden)

    Mario Azcueta

    2017-10-01

    Full Text Available In the last years, an important amount of research has been headed towards the measurement of above-ground forest biomass with polarimetric Synthetic Aperture Radar (SAR tomography techniques. This has motivated the proposal of future bistatic SAR missions, like the recent non-cooperative SAOCOM-CS and PARSIFAL from CONAE and ESA. It is well known that the quality of SAR tomography is directly related to the phase accuracy of the interferometer that, in the case of non-cooperative systems, can be particularly affected by the relative drift between onboard clocks. In this letter, we provide insight on the impact of the clock drift error on bistatic interferometry, as well as propose a correction algorithm to compensate its effect. The accuracy of the compensation is tested on simulated acquisitions over volumetric targets, estimating the final impact on tomographic profiles.

  17. SAR Imagery Applied to the Monitoring of Hyper-Saline Deposits: Death Valley Example (CA)

    Science.gov (United States)

    Lasne, Yannick; Paillou, Philippe; Freeman, Anthony; Chapman, Bruce

    2009-01-01

    The present study aims at understanding the influence of salinity on the dielectric constant of soils and then on the backscattering coeff cients recorded by airborne/spaceborne SAR systems. Based on dielectric measurements performed over hyper-saline deposits in Death Valley (CA), as well as laboratory electromagnetic characterization of salts and water mixtures, we used the dielectric constants as input parameters of analytical IEM simulations to model both the amplitude and phase behaviors of SAR signal at C, and L-bands. Our analytical simulations allow to reproduce specif c copolar signatures recorded in SAR data, corresponding to the Cottonball Basin saltpan. We also propose the copolar backscattering ratio and phase difference as indicators of moistened and salt-affected soils. More precisely, we show that these copolar indicators should allow to monitor the seasonal variations of the dielectric properties of saline deposits.

  18. Behind the mask. Journey through an epidemic: some observations of contrasting public health responses to SARS

    Science.gov (United States)

    Syed, Q; Sopwith, W; Regan, M; Bellis, M

    2003-01-01

    SARS has been called the first global epidemic of the 21st century and has been the cause of a massive and varied public health response in many countries of the world. This report describes observations made by two authors on a journey from Manchester in the United Kingdom to Chiang Mai in Thailand during the peak of global transmission. The public response to SARS, particularly characterised by the wearing of face masks, seemed to outstrip official guidance. Though of uncertain protective benefit, the wearing of masks may have contributed to the awareness of the collective and personal responsibility in combating infectious disease. Active and empowered involvement of the general public in implementing and cooperating with public health control measures supported by national and international authorities has clearly helped to bring SARS under control. The public health significance of such potent symbols as the face mask may be considered in strategies to tackle other emerging infections. PMID:14600109

  19. Towards automatic SAR-optical stereogrammetry over urban areas using very high resolution imagery

    Science.gov (United States)

    Qiu, Chunping; Schmitt, Michael; Zhu, Xiao Xiang

    2018-04-01

    In this paper we discuss the potential and challenges regarding SAR-optical stereogrammetry for urban areas, using very-high-resolution (VHR) remote sensing imagery. Since we do this mainly from a geometrical point of view, we first analyze the height reconstruction accuracy to be expected for different stereogrammetric configurations. Then, we propose a strategy for simultaneous tie point matching and 3D reconstruction, which exploits an epipolar-like search window constraint. To drive the matching and ensure some robustness, we combine different established hand-crafted similarity measures. For the experiments, we use real test data acquired by the Worldview-2, TerraSAR-X and MEMPHIS sensors. Our results show that SAR-optical stereogrammetry using VHR imagery is generally feasible with 3D positioning accuracies in the meter-domain, although the matching of these strongly hetereogeneous multi-sensor data remains very challenging.

  20. Slope Stability Assessment of the Sarcheshmeh Landslide, Northeast Iran, Investigated Using InSAR and GPS Observations

    Directory of Open Access Journals (Sweden)

    Mahdi Motagh

    2013-07-01

    Full Text Available The detection and monitoring of mass movement of susceptible slopes plays a key role in mitigating hazards and potential damage associated with creeping slopes and landslides. In this paper, we use observations from both Interferometric Synthetic Aperture Radar (InSAR and Global Positioning System (GPS to assess the slope stability of the Sarcheshmeh ancient landslide in the North Khorasan province of northeast Iran. InSAR observations were obtained by the time-series analysis of Envisat SAR images covering 2004–2006, whereas repeated GPS observations were conducted by campaign measurements during 2010–2012. Surface displacement maps of the Sarcheshmeh landslide obtained from InSAR and GPS are both indicative of slope stability. Hydrogeological analysis suggests that the multi-year drought and lower than average precipitation levels over the last decade might have contributed to the current dormancy of the Sarcheshmeh landslide.

  1. Improving InSAR geodesy using Global Atmospheric Models

    Science.gov (United States)

    Jolivet, Romain; Agram, Piyush Shanker; Lin, Nina Y.; Simons, Mark; Doin, Marie-Pierre; Peltzer, Gilles; Li, Zhenghong

    2014-03-01

    Spatial and temporal variations of pressure, temperature, and water vapor content in the atmosphere introduce significant confounding delays in interferometric synthetic aperture radar (InSAR) observations of ground deformation and bias estimates of regional strain rates. Producing robust estimates of tropospheric delays remains one of the key challenges in increasing the accuracy of ground deformation measurements using InSAR. Recent studies revealed the efficiency of global atmospheric reanalysis to mitigate the impact of tropospheric delays, motivating further exploration of their potential. Here we explore the effectiveness of these models in several geographic and tectonic settings on both single interferograms and time series analysis products. Both hydrostatic and wet contributions to the phase delay are important to account for. We validate these path delay corrections by comparing with estimates of vertically integrated atmospheric water vapor content derived from the passive multispectral imager Medium-Resolution Imaging Spectrometer, onboard the Envisat satellite. Generally, the performance of the prediction depends on the vigor of atmospheric turbulence. We discuss (1) how separating atmospheric and orbital contributions allows one to better measure long-wavelength deformation and (2) how atmospheric delays affect measurements of surface deformation following earthquakes, and (3) how such a method allows us to reduce biases in multiyear strain rate estimates by reducing the influence of unevenly sampled seasonal oscillations of the tropospheric delay.

  2. Episodic inflation of Akutan volcano, Alaska revealed from GPS and InSAR time series

    Science.gov (United States)

    DeGrandpre, K.; Lu, Z.; Wang, T.

    2016-12-01

    Akutan volcano is one of the most active volcanoes located long the Aleutian arc. At least 27 eruptions have been noted since 1790 and an intense swarm of volcano-tectonic earthquakes occurred in 1996. Surface deformation after the 1996 earthquake sequence has been studied using GPS and Interferometric Synthetic Aperture Radar (InSAR) separately, yet models created from these datasets require different mechanisms to produce the observed surface deformation: an inflating Mogi source results in the best approximation of displacement observed from GPS data, whereas an opening dyke is the best fit to deformation measured from InSAR. A recent study using seismic data revealed complex magmatic structures beneath the caldera, suggesting that the surface deformation may reflect more complicated mechanisms that cannot be estimated using one type of data alone. Here we integrate the surface deformation measured from GPS and InSAR to better understand the magma plumbing system beneath Akutan volcano. GPS time-series at 12 stations from 2006 to 2016 were analyzed, and two transient episodes of inflation in 2008 and 2014 were detected. These GPS stations are, however, too sparse to reveal the spatial distribution of the surface deformation. In order to better define the spatial extent of this inflation four tracks of Envisat data acquired during 2003-2010 and one track of TerraSAR-X data acquired from 2010 to 2016 were processed to produce high-resolution maps of surface deformation. These deformation maps show a consistently uplifting area on the northwestern flank of the volcano. We inverted for the source parameters required to produce the inflation using GPS, InSAR, and a dataset of GPS and InSAR measurements combined, to find that a deep Mogi source below a shallow dyke fit these datasets best. From the TerraSAR-X data, we were also able to measure the subsidence inside the summit caldera due to fumarole activity to be as high as 10 mm/yr. The complex spatial and temporal

  3. SAR Image Classification Based on Its Texture Features

    Institute of Scientific and Technical Information of China (English)

    LI Pingxiang; FANG Shenghui

    2003-01-01

    SAR images not only have the characteristics of all-ay, all-eather, but also provide object information which is different from visible and infrared sensors. However, SAR images have some faults, such as more speckles and fewer bands. The authors conducted the experiments of texture statistics analysis on SAR image features in order to improve the accuracy of SAR image interpretation.It is found that the texture analysis is an effective method for improving the accuracy of the SAR image interpretation.

  4. CFAR Edge Detector for Polarimetric SAR Images

    DEFF Research Database (Denmark)

    Schou, Jesper; Skriver, Henning; Nielsen, Allan Aasbjerg

    2003-01-01

    Finding the edges between different regions in an image is one of the fundamental steps of image analysis, and several edge detectors suitable for the special statistics of synthetic aperture radar (SAR) intensity images have previously been developed. In this paper, a new edge detector for polar...

  5. Discovery and SAR of hydantoin TACE inhibitors

    Energy Technology Data Exchange (ETDEWEB)

    Yu, Wensheng; Guo, Zhuyan; Orth, Peter; Madison, Vincent; Chen, Lei; Dai, Chaoyang; Feltz, Robert J.; Girijavallabhan, Vinay M.; Kim, Seong Heon; Kozlowski, Joseph A.; Lavey, Brian J.; Li, Dansu; Lundell, Daniel; Niu, Xiaoda; Piwinski, John J.; Popovici-Muller, Janeta; Rizvi, Razia; Rosner, Kristin E.; Shankar, Bandarpalle B.; Shih, Neng-Yang; Siddiqui, M.A.; Sun, J.; Tong, L.; Umland, S.; Wong, M.K.; Yang, D.Y.; Zhou, G. (Merck)

    2010-09-03

    We disclose inhibitors of TNF-{alpha} converting enzyme (TACE) designed around a hydantoin zinc binding moiety. Crystal structures of inhibitors bound to TACE revealed monodentate coordination of the hydantoin to the zinc. SAR, X-ray, and modeling designs are described. To our knowledge, these are the first reported X-ray structures of TACE with a hydantoin zinc ligand.

  6. Digital demodulator for wide bandwidth SAR

    DEFF Research Database (Denmark)

    Jørgensen, Jørn Hjelm

    2000-01-01

    A novel approach to the design of efficient digital quadrature demodulators for wide bandwidth SAR systems is described. Efficiency is obtained by setting the intermediate frequency to 1/4 the ADC sampling frequency. One channel is made filter-free by synchronizing the local oscillator...

  7. Offshore wind mapping Mediterranean area using SAR

    DEFF Research Database (Denmark)

    Calaudi, Rosamaria; Arena, Felice; Badger, Merete

    2013-01-01

    Satellite observations of the ocean surface, for example from Synthetic Aperture Radars (SAR), provide information about the spatial wind variability over large areas. This is of special interest in the Mediterranean Sea, where spatial wind information is only provided by sparse buoys, often with...

  8. Peptide Mimicrying Between SARS Coronavirus Spike Protein and Human Proteins Reacts with SARS Patient Serum

    Directory of Open Access Journals (Sweden)

    K.-Y. Hwa

    2008-01-01

    Full Text Available Molecular mimicry, defined as similar structures shared by molecules from dissimilar genes or proteins, is a general strategy used by pathogens to infect host cells. Severe acute respiratory syndrome (SARS is a new human respiratory infectious disease caused by SARS coronavirus (SARS-CoV. The spike (S protein of SARS-CoV plays an important role in the virus entry into a cell. In this study, eleven synthetic peptides from the S protein were selected based on its sequence homology with human proteins. Two of the peptides D07 (residues 927–937 and D08 (residues 942–951 were recognized by the sera of SARS patients. Murine hyperimmune sera against these peptides bound to proteins of human lung epithelial cells A549. Another peptide D10 (residues 490–502 stimulated A549 to proliferate and secrete IL-8. The present results suggest that the selected S protein regions, which share sequence homology with human proteins, may play important roles in SARS-CoV infection.

  9. The Seamless SAR Archive (SSARA) Project and Other SAR Activities at UNAVCO

    Science.gov (United States)

    Baker, S.; Crosby, C. J.; Meertens, C. M.; Fielding, E. J.; Bryson, G.; Buechler, B.; Nicoll, J.; Baru, C.

    2014-12-01

    The seamless synthetic aperture radar archive (SSARA) implements a seamless distributed access system for SAR data and derived data products (i.e. interferograms). SSARA provides a unified application programming interface (API) for SAR data search and results at the Alaska Satellite Facility and UNAVCO (WInSAR and EarthScope data archives) through the use of simple web services. A federated query service was developed using the unified APIs, providing users a single search interface for both archives. Interest from the international community has prompted an effort to incorporate ESA's Virtual Archive 4 Geohazard Supersites and Natural Laboratories (GSNL) collections and other archives into the federated query service. SSARA also provides Digital Elevation Model access for topographic correction via a simple web service through OpenTopography and tropospheric correction products through JPL's OSCAR service. Additionally, UNAVCO provides data storage capabilities for WInSAR PIs with approved TerraSAR-X and ALOS-2 proposals which allows easier distribution to US collaborators on associated proposals and facilitates data access through the SSARA web services. Further work is underway to incorporate federated data discovery for GSNL across SAR, GPS, and seismic datasets provided by web services from SSARA, GSAC, and COOPEUS.

  10. Estimation of Melt Pond Fractions on First Year Sea Ice Using Compact Polarization SAR

    Science.gov (United States)

    Li, Haiyan; Perrie, William; Li, Qun; Hou, Yijun

    2017-10-01

    Melt ponds are a common feature on Arctic sea ice. They are linked to the sea ice surface albedo and transmittance of energy to the ocean from the atmosphere and thus constitute an important process to parameterize in Arctic climate models and simulations. This paper presents a first attempt to retrieve the melt pond fraction from hybrid-polarized compact polarization (CP) SAR imagery, which has wider swath and shorter revisit time than the quad-polarization systems, e.g., from RADARSAT-2 (RS-2). The co-polarization (co-pol) ratio has been verified to provide estimates of melt pond fractions. However, it is a challenge to link CP parameters and the co-pol ratio. The theoretical possibility is presented, for making this linkage with the CP parameter C22/C11 (the ratio between the elements of the coherence matrix of CP SAR) for melt pond detection and monitoring with the tilted-Bragg scattering model for the ocean surface. The empirical transformed formulation, denoted as the "compact polarization and quad-pol" ("CPQP") model, is proposed, based on 2062 RS-2 quad-pol SAR images, collocated with in situ measurements. We compared the retrieved melt pond fraction with CP parameters simulated from quad-pol SAR data with results retrieved from the co-pol ratio from quad-pol SAR observations acquired during the Arctic-Ice (Arctic-Ice Covered Ecosystem in a Rapidly Changing Environment) field project. The results are shown to be comparable for observed melt pond measurements in spatial and temporal distributions. Thus, the utility of CP mode SAR for melt pond fraction estimation on first year level ice is presented.

  11. SAR Raw Data Generation for Complex Airport Scenes

    Directory of Open Access Journals (Sweden)

    Jia Li

    2014-10-01

    Full Text Available The method of generating the SAR raw data of complex airport scenes is studied in this paper. A formulation of the SAR raw signal model of airport scenes is given. Via generating the echoes from the background, aircrafts and buildings, respectively, the SAR raw data of the unified SAR imaging geometry is obtained from their vector additions. The multipath scattering and the shadowing between the background and different ground covers of standing airplanes and buildings are analyzed. Based on the scattering characteristics, coupling scattering models and SAR raw data models of different targets are given, respectively. A procedure is given to generate the SAR raw data of airport scenes. The SAR images from the simulated raw data demonstrate the validity of the proposed method.

  12. ANALYSIS OF MULTIPATH PIXELS IN SAR IMAGES

    Directory of Open Access Journals (Sweden)

    J. W. Zhao

    2016-06-01

    Full Text Available As the received radar signal is the sum of signal contributions overlaid in one single pixel regardless of the travel path, the multipath effect should be seriously tackled as the multiple bounce returns are added to direct scatter echoes which leads to ghost scatters. Most of the existing solution towards the multipath is to recover the signal propagation path. To facilitate the signal propagation simulation process, plenty of aspects such as sensor parameters, the geometry of the objects (shape, location, orientation, mutual position between adjacent buildings and the physical parameters of the surface (roughness, correlation length, permittivitywhich determine the strength of radar signal backscattered to the SAR sensor should be given in previous. However, it's not practical to obtain the highly detailed object model in unfamiliar area by field survey as it's a laborious work and time-consuming. In this paper, SAR imaging simulation based on RaySAR is conducted at first aiming at basic understanding of multipath effects and for further comparison. Besides of the pre-imaging simulation, the product of the after-imaging, which refers to radar images is also taken into consideration. Both Cosmo-SkyMed ascending and descending SAR images of Lupu Bridge in Shanghai are used for the experiment. As a result, the reflectivity map and signal distribution map of different bounce level are simulated and validated by 3D real model. The statistic indexes such as the phase stability, mean amplitude, amplitude dispersion, coherence and mean-sigma ratio in case of layover are analyzed with combination of the RaySAR output.

  13. New challenges for a SAR toolbox

    International Nuclear Information System (INIS)

    Loreaux, P.; Quin, G.

    2013-01-01

    High resolution multi-frequency synthetic aperture radar (SAR) imagery, available since early 2008, brings all weather capability and day/night operability in support of safeguards verification. Today, a combined approach of high resolution optical and radar imagery in monitoring exercise would enable looking at any area of interest on daily basis. One of the challenges is the co-registration of SAR images acquired with different acquisition mode and also with different optical images. We show in this paper the on-going research work to find a general co-register method and an automatic tool to detect changes. Before having an operational co-register tool, a method to find automatically tie points between SAR images acquired with different acquisition mode and with optical images has to be developed. Concerning an automatic change detection method we can conclude that the study of the Harmonic mean, Geometric mean and Arithmetic mean, enables several applications like change detection for SAR imagery. Thus, we developed the MAGMA (Method for Arithmetic and Geometric Means Analysis) change detection method. As shown in this paper, the MAGMA method improves the Maximum Likelihood techniques like GLRT, using Information-Theory concepts to detect changes between SAR amplitude images. The major improvement consists in a lower false detection rate, especially in low amplitude areas. The second improvement consists in a better location of the changes in clearly delimited areas, which enables precise interpretations. Results presented here reveal the potential of high resolution radar imagery for a baseline description of some sites, change detection based on repeat pass imagery acquisitions and site specific constraints in coherent change detection due to cover conditions. (A.C.)

  14. Polarimetric SAR Interferometry based modeling for tree height and aboveground biomass retrieval in a tropical deciduous forest

    Science.gov (United States)

    Kumar, Shashi; Khati, Unmesh G.; Chandola, Shreya; Agrawal, Shefali; Kushwaha, Satya P. S.

    2017-08-01

    The regulation of the carbon cycle is a critical ecosystem service provided by forests globally. It is, therefore, necessary to have robust techniques for speedy assessment of forest biophysical parameters at the landscape level. It is arduous and time taking to monitor the status of vast forest landscapes using traditional field methods. Remote sensing and GIS techniques are efficient tools that can monitor the health of forests regularly. Biomass estimation is a key parameter in the assessment of forest health. Polarimetric SAR (PolSAR) remote sensing has already shown its potential for forest biophysical parameter retrieval. The current research work focuses on the retrieval of forest biophysical parameters of tropical deciduous forest, using fully polarimetric spaceborne C-band data with Polarimetric SAR Interferometry (PolInSAR) techniques. PolSAR based Interferometric Water Cloud Model (IWCM) has been used to estimate aboveground biomass (AGB). Input parameters to the IWCM have been extracted from the decomposition modeling of SAR data as well as PolInSAR coherence estimation. The technique of forest tree height retrieval utilized PolInSAR coherence based modeling approach. Two techniques - Coherence Amplitude Inversion (CAI) and Three Stage Inversion (TSI) - for forest height estimation are discussed, compared and validated. These techniques allow estimation of forest stand height and true ground topography. The accuracy of the forest height estimated is assessed using ground-based measurements. PolInSAR based forest height models showed enervation in the identification of forest vegetation and as a result height values were obtained in river channels and plain areas. Overestimation in forest height was also noticed at several patches of the forest. To overcome this problem, coherence and backscatter based threshold technique is introduced for forest area identification and accurate height estimation in non-forested regions. IWCM based modeling for forest

  15. Assessing groundwater depletion and dynamics using GRACE and InSAR: Potential and limitations

    Science.gov (United States)

    Castellazzi, Pascal; Martel, Richard; Galloway, Devin L.; Longuevergne, Laurent; Rivera, Alfonso

    2016-01-01

    In the last decade, remote sensing of the temporal variation of ground level and gravity has improved our understanding of groundwater dynamics and storage. Mass changes are measured by GRACE (Gravity Recovery and Climate Experiment) satellites, whereas ground deformation is measured by processing synthetic aperture radar satellites data using the InSAR (Interferometry of Synthetic Aperture Radar) techniques. Both methods are complementary and offer different sensitivities to aquifer system processes. GRACE is sensitive to mass changes over large spatial scales (more than 100,000 km2). As such, it fails in providing groundwater storage change estimates at local or regional scales relevant to most aquifer systems, and at which most groundwater management schemes are applied. However, InSAR measures ground displacement due to aquifer response to fluid-pressure changes. InSAR applications to groundwater depletion assessments are limited to aquifer systems susceptible to measurable deformation. Furthermore, the inversion of InSAR-derived displacement maps into volume of depleted groundwater storage (both reversible and largely irreversible) is confounded by vertical and horizontal variability of sediment compressibility. During the last decade, both techniques have shown increasing interest in the scientific community to complement available in situ observations where they are insufficient. In this review, we present the theoretical and conceptual bases of each method, and present idealized scenarios to highlight the potential benefits and challenges of combining these techniques to remotely assess groundwater storage changes and other aspects of the dynamics of aquifer systems.

  16. Dual-Frequency, Dual-Polarization Microstrip Antenna Development for High-Resolution, Airborne SAR

    DEFF Research Database (Denmark)

    Granholm, Johan; Skou, N.

    2000-01-01

    synthetic aperture radar (SAR) system. The dual-frequency array concept adopted relies on the use of probe-fed perforated, stacked patches for L-band (1.2-1.3 GHz). Inside these perforations probe-fed, wideband stacked microstrip patches for C-band (4.9-5.7 GHz) are placed. Measured impedance and radiation...

  17. Elevated plasma surfactant protein D (SP-D) levels and a direct correlation with anti-severe acute respiratory syndrome coronavirus-specific IgG antibody in SARS patients

    DEFF Research Database (Denmark)

    Wu, Y P; Liu, Z H; Wei, R

    2009-01-01

    Pulmonary SP-D is a defence lectin promoting clearance of viral infections. SP-D is recognized to bind the S protein of SARS-CoV and enhance phagocytosis. Moreover, systemic SP-D is widely used as a biomarker of alveolar integrity. We investigated the relation between plasma SP-D, SARS-type pneum......Pulmonary SP-D is a defence lectin promoting clearance of viral infections. SP-D is recognized to bind the S protein of SARS-CoV and enhance phagocytosis. Moreover, systemic SP-D is widely used as a biomarker of alveolar integrity. We investigated the relation between plasma SP-D, SARS......-type pneumonia and the SARS-specific IgG response. Sixteen patients with SARS, 19 patients with community-acquired pneumonia (CAP) (Streptococcus pneumonia) and 16 healthy control subjects were enrolled in the study. Plasma SP-D and anti-SARS-CoV N protein IgG were measured using ELISA. SP-D was significantly...... elevated in SARS-type pneumonia [median (95% CI), 453 (379-963) ng/ml versus controls 218 (160-362) ng/ml, P protein IgG (r(2) = 0.5995, P = 0.02). The possible re-emergence of SARS or SARS-like infections suggests a need...

  18. Wind Atlas of Aegean Sea with SAR data

    DEFF Research Database (Denmark)

    Bingöl, Ferhat; Hasager, Charlotte Bay; Badger, Merete

    2013-01-01

    The Global Wind Atlas project is established to create a “free-to-use” wind atlas of the whole globe. The modelling chain of the project includes micro-scale models and new reanalysis datasets. Local measurements are planed to be use for test and validation. Unfortunately, it is not always possible...... to find long term offshore measurement to make wind statistics. The main reason is the cost of setup and maintenance of an offshore mast. One of the regions which has high potential in wind resources but so far is without any long term offshore measurement is the Aegean sea. Recent developments...... in satellite radar technologies made it possible to use Synthetic Aperture Radars (SAR) for wind speed and direction measurements at offshore locations. In this study, a new technique of making wind atlases is applied to the region of Aegean Sea is presented. The method has been tested and validated...

  19. Soil parameter retrieval under vegetation cover using SAR polarimetery

    Energy Technology Data Exchange (ETDEWEB)

    Jagdhuber, Thomas

    2012-07-01

    Soil conditions under vegetation cover and their spatial and temporal variations from point to catchment scale are crucial for understanding hydrological processes within the vadose zone, for managing irrigation and consequently maximizing yield by precision farming. Soil moisture and soil roughness are the key parameters that characterize the soil status. In order to monitor their spatial and temporal variability on large scales, remote sensing techniques are required. Therefore the determination of soil parameters under vegetation cover was approached in this thesis by means of (multi-angular) polarimetric SAR acquisitions at a longer wavelength (L-band, {lambda}{sub c}=23cm). In this thesis, the penetration capabilities of L-band are combined with newly developed (multi-angular) polarimetric decomposition techniques to separate the different scattering contributions, which are occurring in vegetation and on ground. Subsequently the ground components are inverted to estimate the soil characteristics. The novel (multi-angular) polarimetric decomposition techniques for soil parameter retrieval are physically-based, computationally inexpensive and can be solved analytically without any a priori knowledge. Therefore they can be applied without test site calibration directly to agricultural areas. The developed algorithms are validated with fully polarimetric SAR data acquired by the airborne E-SAR sensor of the German Aerospace Center (DLR) for three different study areas in Germany. The achieved results reveal inversion rates up to 99% for the soil moisture and soil roughness retrieval in agricultural areas. However, in forested areas the inversion rate drops significantly for most of the algorithms, because the inversion in forests is invalid for the applied scattering models at L-band. The validation against simultaneously acquired field measurements indicates an estimation accuracy (root mean square error) of 5-10vol.% for the soil moisture (range of in situ

  20. The estimation of 3D SAR distributions in the human head from mobile phone compliance testing data for epidemiological studies

    International Nuclear Information System (INIS)

    Wake, Kanako; Watanabe, Soichi; Taki, Masao; Varsier, Nadege; Wiart, Joe; Mann, Simon; Deltour, Isabelle; Cardis, Elisabeth

    2009-01-01

    A worldwide epidemiological study called 'INTERPHONE' has been conducted to estimate the hypothetical relationship between brain tumors and mobile phone use. In this study, we proposed a method to estimate 3D distribution of the specific absorption rate (SAR) in the human head due to mobile phone use to provide the exposure gradient for epidemiological studies. 3D SAR distributions due to exposure to an electromagnetic field from mobile phones are estimated from mobile phone compliance testing data for actual devices. The data for compliance testing are measured only on the surface in the region near the device and in a small 3D region around the maximum on the surface in a homogeneous phantom with a specific shape. The method includes an interpolation/extrapolation and a head shape conversion. With the interpolation/extrapolation, SAR distributions in the whole head are estimated from the limited measured data. 3D SAR distributions in the numerical head models, where the tumor location is identified in the epidemiological studies, are obtained from measured SAR data with the head shape conversion by projection. Validation of the proposed method was performed experimentally and numerically. It was confirmed that the proposed method provided good estimation of 3D SAR distribution in the head, especially in the brain, which is the tissue of major interest in epidemiological studies. We conclude that it is possible to estimate 3D SAR distributions in a realistic head model from the data obtained by compliance testing measurements to provide a measure for the exposure gradient in specific locations of the brain for the purpose of exposure assessment in epidemiological studies. The proposed method has been used in several studies in the INTERPHONE.

  1. Calibration of a Land Subsidence Model Using InSAR Data via the Ensemble Kalman Filter.

    Science.gov (United States)

    Li, Liangping; Zhang, Meijing; Katzenstein, Kurt

    2017-11-01

    The application of interferometric synthetic aperture radar (InSAR) has been increasingly used to improve capabilities to model land subsidence in hydrogeologic studies. A number of investigations over the last decade show how spatially detailed time-lapse images of ground displacements could be utilized to advance our understanding for better predictions. In this work, we use simulated land subsidences as observed measurements, mimicking InSAR data to inversely infer inelastic specific storage in a stochastic framework. The inelastic specific storage is assumed as a random variable and modeled using a geostatistical method such that the detailed variations in space could be represented and also that the uncertainties of both characterization of specific storage and prediction of land subsidence can be assessed. The ensemble Kalman filter (EnKF), a real-time data assimilation algorithm, is used to inversely calibrate a land subsidence model by matching simulated subsidences with InSAR data. The performance of the EnKF is demonstrated in a synthetic example in which simulated surface deformations using a reference field are assumed as InSAR data for inverse modeling. The results indicate: (1) the EnKF can be used successfully to calibrate a land subsidence model with InSAR data; the estimation of inelastic specific storage is improved, and uncertainty of prediction is reduced, when all the data are accounted for; and (2) if the same ensemble is used to estimate Kalman gain, the analysis errors could cause filter divergence; thus, it is essential to include localization in the EnKF for InSAR data assimilation. © 2017, National Ground Water Association.

  2. InSAR to support sustainable urbanization over compacting aquifers: The case of Toluca Valley, Mexico

    Science.gov (United States)

    Castellazzi, Pascal; Garfias, Jaime; Martel, Richard; Brouard, Charles; Rivera, Alfonso

    2017-12-01

    This paper illustrates how InSAR alone can be used to delineate potential ground fractures related to aquifer system compaction. An InSAR-derived ground fracturing map of the Toluca Valley, Mexico, is produced and validated through a field campaign. The results are of great interest to support sustainable urbanization and show that InSAR processing of open-access Synthetic Aperture Radar (SAR) data from the Sentinel-1 satellites can lead to reliable and cost-effective products directly usable by cities to help decision-making. The Toluca Valley Aquifer (TVA) sustains the water needs of two million inhabitants living within the valley, a growing industry, an intensively irrigated agricultural area, and 38% of the water needs of the megalopolis of Mexico City, located 40 km east of the valley. Ensuring water sustainability, infrastructure integrity, along with supporting the important economic and demographic growth of the region, is a major challenge for water managers and urban developers. This paper presents a long-term analysis of ground fracturing by interpreting 13 years of InSAR-derived ground displacement measurements. Small Baseline Subset (SBAS) and Persistent Scatterer Interferometry (PSI) techniques are applied over three SAR datasets totalling 93 acquisitions from Envisat, Radarsat-2, and Sentinel-1A satellites and covering the period from 2003 to 2016. From 2003 to 2016, groundwater level declines of up to 1.6 m/yr, land subsidence up to 77 mm/yr, and major infrastructure damages are observed. Groundwater level data show highly variable seasonal responses according to their connectivity to recharge areas. However, the trend of groundwater levels consistently range from -0.5 to -1.5 m/yr regardless of the well location and depth. By analysing the horizontal gradients of vertical land subsidence, we provide a potential ground fracture map to assist in future urban development planning in the Toluca Valley.

  3. Effects of Target Positioning Error on Motion Compensation for Airborne Interferometric SAR

    Directory of Open Access Journals (Sweden)

    Li Yin-wei

    2013-12-01

    Full Text Available The measurement inaccuracies of Inertial Measurement Unit/Global Positioning System (IMU/GPS as well as the positioning error of the target may contribute to the residual uncompensated motion errors in the MOtion COmpensation (MOCO approach based on the measurement of IMU/GPS. Aiming at the effects of target positioning error on MOCO for airborne interferometric SAR, the paper firstly deduces a mathematical model of residual motion error bring out by target positioning error under the condition of squint. And the paper analyzes the effects on the residual motion error caused by system sampling delay error, the Doppler center frequency error and reference DEM error which result in target positioning error based on the model. Then, the paper discusses the effects of the reference DEM error on the interferometric SAR image quality, the interferometric phase and the coherent coefficient. The research provides theoretical bases for the MOCO precision in signal processing of airborne high precision SAR and airborne repeat-pass interferometric SAR.

  4. Influence of information about specific absorption rate (SAR) upon customers' purchase decisions and safety evaluation of mobile phones.

    Science.gov (United States)

    Wiedemann, Peter M; Schütz, Holger; Clauberg, Martin

    2008-02-01

    This study investigated whether the SAR value is a purchase-relevant characteristic of mobile phones for laypersons and what effect the disclosure of a precautionary SAR value has on laypersons' risk perception. The study consisted of two parts: Study part 1 used a conjoint analysis design to explore the relevance of the SAR value and other features of mobile phones for an intended buying decision. Study part 2 used an experimental, repeated measures design to examine the effect of the magnitude of SAR values and the disclosure of a precautionary SAR value on risk perception. In addition, the study included an analysis of prior concerns of the study participants with regard to mobile phone risks. Part 1 indicates that the SAR value has a high relevance for laypersons' purchase intentions. In the experimental purchase setting it ranks even before price and equipment features. The results of study part 2 show that providing information of a precautionary limit value does not influence risk perception. This result suggests that laypersons' underlying subjective "safety model" for mobile phones resembles more a "margin of safety" concept than a threshold concept. The latter observation holds true no matter how concerned the participants are. (c) 2007 Wiley-Liss, Inc.

  5. Characterizing and estimating noise in InSAR and InSAR time series with MODIS

    Science.gov (United States)

    Barnhart, William D.; Lohman, Rowena B.

    2013-01-01

    InSAR time series analysis is increasingly used to image subcentimeter displacement rates of the ground surface. The precision of InSAR observations is often affected by several noise sources, including spatially correlated noise from the turbulent atmosphere. Under ideal scenarios, InSAR time series techniques can substantially mitigate these effects; however, in practice the temporal distribution of InSAR acquisitions over much of the world exhibit seasonal biases, long temporal gaps, and insufficient acquisitions to confidently obtain the precisions desired for tectonic research. Here, we introduce a technique for constraining the magnitude of errors expected from atmospheric phase delays on the ground displacement rates inferred from an InSAR time series using independent observations of precipitable water vapor from MODIS. We implement a Monte Carlo error estimation technique based on multiple (100+) MODIS-based time series that sample date ranges close to the acquisitions times of the available SAR imagery. This stochastic approach allows evaluation of the significance of signals present in the final time series product, in particular their correlation with topography and seasonality. We find that topographically correlated noise in individual interferograms is not spatially stationary, even over short-spatial scales (<10 km). Overall, MODIS-inferred displacements and velocities exhibit errors of similar magnitude to the variability within an InSAR time series. We examine the MODIS-based confidence bounds in regions with a range of inferred displacement rates, and find we are capable of resolving velocities as low as 1.5 mm/yr with uncertainties increasing to ∼6 mm/yr in regions with higher topographic relief.

  6. Implementation of integrated circuit and design of SAR ADC for fully implantable hearing aids.

    Science.gov (United States)

    Kim, Jong Hoon; Lee, Jyung Hyun; Cho, Jin-Ho

    2017-07-20

    designed SAR ADC occupied 124.9 μm × 152.1 μm. The circuit verification was performed by layout versus schematic (LVS) and design rule check (DRC) which are provided by Calibre (Mentor Graphics, USA), and it was confirmed that there was no error. The designed SAR ADC was implemented in SMIC 180 nm CMOS technology. The operation of the manufactured SAR ADC was confirmed by using an oscilloscope. The SAR ADC output was measured using a distortion meter (HM 8027), when applying pure tone sounds of 94 dB SPL at 500, 800, and 1600 Hz regions. As a result, the THD performance of the proposed chip was satisfied with the ANSI. s3. 22. 2003 standard. We proposed a low-power 16-bit 32 kHz SAR ADC for fully implantable hearing aids. The manufactured SAR ADC based on this design was confirmed to have advantages in power consumption and size through the comparison with the conventional ADC. Therefore, the manufactured SAR ADC is expected to be used in the implantable medical device field and speech signal processing field, which require small size and low power consumption.

  7. Modeling of SAR returns from a red pine stand

    Science.gov (United States)

    Lang, R. H.; Kilic, O.; Chauhan, N. S.; Ranson, J.

    1992-01-01

    Bright P-band radar returns from red pine forests have been observed on synthetic aperture radar (SAR) images in Bangor, Maine. A plot of red pine trees was selected for the characterization and modeling to understand the cause of the high P-band returns. The red pine stand under study consisted of mature trees. Diameter at breast height (DBH) measurements were made to determine stand density as a function of tree diameter. Soil moisture and bulk density measurements were taken along with ground rough surface profiles. Detailed biomass measurements of the needles, shoots, branches, and trunks were also taken. These site statistics have been used in a distorted Born approximation model of the forest. Computations indicate that the direct-reflected or the double-bounce contributions from the ground are responsible for the high observed P-band returns for HH polarization.

  8. Spaceborne Polarimetric SAR Interferometry: Performance Analysis and Mission Concepts

    Directory of Open Access Journals (Sweden)

    Shane R. Cloude

    2005-12-01

    Full Text Available We investigate multichannel imaging radar systems employing coherent combinations of polarimetry and interferometry (Pol-InSAR. Such systems are well suited for the extraction of bio- and geophysical parameters by evaluating the combined scattering from surfaces and volumes. This combination leads to several important differences between the design of Pol-InSAR sensors and conventional single polarisation SAR interferometers. We first highlight these differences and then investigate the Pol-InSAR performance of two proposed spaceborne SAR systems (ALOS/PalSAR and TerraSAR-L operating in repeat-pass mode. For this, we introduce the novel concept of a phase tube which enables (1 a quantitative assessment of the Pol-InSAR performance, (2 a comparison between different sensor configurations, and (3 an optimization of the instrument settings for different Pol-InSAR applications. The phase tube may hence serve as an interface between system engineers and application-oriented scientists. The performance analysis reveals major limitations for even moderate levels of temporal decorrelation. Such deteriorations may be avoided in single-pass sensor configurations and we demonstrate the potential benefits from the use of future bi- and multistatic SAR interferometers.

  9. Federated query services provided by the Seamless SAR Archive project

    Science.gov (United States)

    Baker, S.; Bryson, G.; Buechler, B.; Meertens, C. M.; Crosby, C. J.; Fielding, E. J.; Nicoll, J.; Youn, C.; Baru, C.

    2013-12-01

    The NASA Advancing Collaborative Connections for Earth System Science (ACCESS) seamless synthetic aperture radar (SAR) archive (SSARA) project is a 2-year collaboration between UNAVCO, the Alaska Satellite Facility (ASF), the Jet Propulsion Laboratory (JPL), and OpenTopography at the San Diego Supercomputer Center (SDSC) to design and implement a seamless distributed access system for SAR data and derived data products (i.e. interferograms). A major milestone for the first year of the SSARA project was a unified application programming interface (API) for SAR data search and results at ASF and UNAVCO (WInSAR and EarthScope data archives) through the use of simple web services. A federated query service was developed using the unified APIs, providing users a single search interface for both archives (http://www.unavco.org/ws/brokered/ssara/sar/search). A command line client that utilizes this new service is provided as an open source utility for the community on GitHub (https://github.com/bakerunavco/SSARA). Further API development and enhancements added more InSAR specific keywords and quality control parameters (Doppler centroid, faraday rotation, InSAR stack size, and perpendicular baselines). To facilitate InSAR processing, the federated query service incorporated URLs for DEM (from OpenTopography) and tropospheric corrections (from the JPL OSCAR service) in addition to the URLs for SAR data. This federated query service will provide relevant QC metadata for selecting pairs of SAR data for InSAR processing and all the URLs necessary for interferogram generation. Interest from the international community has prompted an effort to incorporate other SAR data archives (the ESA Virtual Archive 4 and the DLR TerraSAR-X_SSC Geohazard Supersites and Natural Laboratories collections) into the federated query service which provide data for researchers outside the US and North America.

  10. Retrovirus-specific differences in matrix and nucleocapsid protein-nucleic acid interactions: implications for genomic RNA packaging.

    Science.gov (United States)

    Sun, Meng; Grigsby, Iwen F; Gorelick, Robert J; Mansky, Louis M; Musier-Forsyth, Karin

    2014-01-01

    Retroviral RNA encapsidation involves a recognition event between genomic RNA (gRNA) and one or more domains in Gag. In HIV-1, the nucleocapsid (NC) domain is involved in gRNA packaging and displays robust nucleic acid (NA) binding and chaperone functions. In comparison, NC of human T-cell leukemia virus type 1 (HTLV-1), a deltaretrovirus, displays weaker NA binding and chaperone activity. Mutation of conserved charged residues in the deltaretrovirus bovine leukemia virus (BLV) matrix (MA) and NC domains affects virus replication and gRNA packaging efficiency. Based on these observations, we hypothesized that the MA domain may generally contribute to NA binding and genome encapsidation in deltaretroviruses. Here, we examined the interaction between HTLV-2 and HIV-1 MA proteins and various NAs in vitro. HTLV-2 MA displays higher NA binding affinity and better chaperone activity than HIV-1 MA. HTLV-2 MA also binds NAs with higher affinity than HTLV-2 NC and displays more robust chaperone function. Mutation of two basic residues in HTLV-2 MA α-helix II, previously implicated in BLV gRNA packaging, reduces NA binding affinity. HTLV-2 MA binds with high affinity and specificity to RNA derived from the putative packaging signal of HTLV-2 relative to nonspecific NA. Furthermore, an HIV-1 MA triple mutant designed to mimic the basic character of HTLV-2 MA α-helix II dramatically improves binding affinity and chaperone activity of HIV-1 MA in vitro and restores RNA packaging to a ΔNC HIV-1 variant in cell-based assays. Taken together, these results are consistent with a role for deltaretrovirus MA proteins in viral RNA packaging.

  11. Dynamics of Linker Residues Modulate the Nucleic Acid Binding Properties of the HIV-1 Nucleocapsid Protein Zinc Fingers

    Science.gov (United States)

    Zargarian, Loussiné; Tisné, Carine; Barraud, Pierre; Xu, Xiaoqian; Morellet, Nelly; René, Brigitte; Mély, Yves; Fossé, Philippe; Mauffret, Olivier

    2014-01-01

    The HIV-1 nucleocapsid protein (NC) is a small basic protein containing two zinc fingers (ZF) separated by a short linker. It is involved in several steps of the replication cycle and acts as a nucleic acid chaperone protein in facilitating nucleic acid strand transfers occurring during reverse transcription. Recent analysis of three-dimensional structures of NC-nucleic acids complexes established a new property: the unpaired guanines targeted by NC are more often inserted in the C-terminal zinc finger (ZF2) than in the N-terminal zinc finger (ZF1). Although previous NMR dynamic studies were performed with NC, the dynamic behavior of the linker residues connecting the two ZF domains remains unclear. This prompted us to investigate the dynamic behavior of the linker residues. Here, we collected 15N NMR relaxation data and used for the first time data at several fields to probe the protein dynamics. The analysis at two fields allows us to detect a slow motion occurring between the two domains around a hinge located in the linker at the G35 position. However, the amplitude of motion appears limited in our conditions. In addition, we showed that the neighboring linker residues R29, A30, P31, R32, K33 displayed restricted motion and numerous contacts with residues of ZF1. Our results are fully consistent with a model in which the ZF1-linker contacts prevent the ZF1 domain to interact with unpaired guanines, whereas the ZF2 domain is more accessible and competent to interact with unpaired guanines. In contrast, ZF1 with its large hydrophobic plateau is able to destabilize the double-stranded regions adjacent to the guanines bound by ZF2. The linker residues and the internal dynamics of NC regulate therefore the different functions of the two zinc fingers that are required for an optimal chaperone activity. PMID:25029439

  12. Viral RNA annealing activities of human immunodeficiency virus type 1 nucleocapsid protein require only peptide domains outside the zinc fingers.

    Science.gov (United States)

    De Rocquigny, H; Gabus, C; Vincent, A; Fournié-Zaluski, M C; Roques, B; Darlix, J L

    1992-07-15

    The nucleocapsid (NC) of human immunodeficiency virus type 1 consists of a large number of NC protein molecules, probably wrapping the dimeric RNA genome within the virion inner core. NC protein is a gag-encoded product that contains two zinc fingers flanked by basic residues. In human immunodeficiency virus type 1 virions, NCp15 is ultimately processed into NCp7 and p6 proteins. During virion assembly the retroviral NC protein is necessary for core formation and genomic RNA encapsidation, which are essential for virus infectivity. In vitro NCp15 activates viral RNA dimerization, a process most probably linked in vivo to genomic RNA packaging, and replication primer tRNA(Lys,3) annealing to the initiation site of reverse transcription. To characterize the domains of human immunodeficiency virus type 1 NC protein necessary for its various functions, the 72-amino acid NCp7 and several derived peptides were synthesized in a pure form. We show here that synthetic NCp7 with or without the two zinc fingers has the RNA annealing activities of NCp15. Further deletions of the N-terminal 12 and C-terminal 8 amino acids, leading to a 27-residue peptide lacking the finger domains, have little or no effect on NC protein activity in vitro. However deletion of short sequences containing basic residues flanking the first finger leads to a complete loss of NC protein activity. It is proposed that the basic residues and the zinc fingers cooperate to select and package the genomic RNA in vivo. Inhibition of the viral RNA binding and annealing activities associated with the basic residues flanking the first zinc finger of NC protein could therefore be used as a model for the design of antiviral agents.

  13. Functional interactions of nucleocapsid protein of feline immunodeficiency virus and cellular prion protein with the viral RNA.

    Science.gov (United States)

    Moscardini, Mila; Pistello, Mauro; Bendinelli, M; Ficheux, Damien; Miller, Jennifer T; Gabus, Caroline; Le Grice, Stuart F J; Surewicz, Witold K; Darlix, Jean-Luc

    2002-04-19

    All lentiviruses and oncoretroviruses examined so far encode a major nucleic-acid binding protein (nucleocapsid or NC* protein), approximately 2500 molecules of which coat the dimeric RNA genome. Studies on HIV-1 and MoMuLV using in vitro model systems and in vivo have shown that NC protein is required to chaperone viral RNA dimerization and packaging during virus assembly, and proviral DNA synthesis by reverse transcriptase (RT) during infection. The human cellular prion protein (PrP), thought to be the major component of the agent causing transmissible spongiform encephalopathies (TSE), was recently found to possess a strong affinity for nucleic acids and to exhibit chaperone properties very similar to HIV-1 NC protein in the HIV-1 context in vitro. Tight binding of PrP to nucleic acids is proposed to participate directly in the prion disease process. To extend our understanding of lentiviruses and of the unexpected nucleic acid chaperone properties of the human prion protein, we set up an in vitro system to investigate replication of the feline immunodeficiency virus (FIV), which is functionally and phylogenetically distant from HIV-1. The results show that in the FIV model system, NC protein chaperones viral RNA dimerization, primer tRNA(Lys,3) annealing to the genomic primer-binding site (PBS) and minus strand DNA synthesis by the homologous FIV RT. FIV NC protein is able to trigger specific viral DNA synthesis by inhibiting self-priming of reverse transcription. The human prion protein was found to mimic the properties of FIV NC with respect to primer tRNA annealing to the viral RNA and chaperoning minus strand DNA synthesis. Copyright 2002 Elsevier Science Ltd.

  14. Charge neutralization as the major factor for the assembly of nucleocapsid-like particles from C-terminal truncated hepatitis C virus core protein.

    Science.gov (United States)

    de Souza, Theo Luiz Ferraz; de Lima, Sheila Maria Barbosa; Braga, Vanessa L de Azevedo; Peabody, David S; Ferreira, Davis Fernandes; Bianconi, M Lucia; Gomes, Andre Marco de Oliveira; Silva, Jerson Lima; de Oliveira, Andréa Cheble

    2016-01-01

    Hepatitis C virus (HCV) core protein, in addition to its structural role to form the nucleocapsid assembly, plays a critical role in HCV pathogenesis by interfering in several cellular processes, including microRNA and mRNA homeostasis. The C-terminal truncated HCV core protein (C124) is intrinsically unstructured in solution and is able to interact with unspecific nucleic acids, in the micromolar range, and to assemble into nucleocapsid-like particles (NLPs) in vitro . The specificity and propensity of C124 to the assembly and its implications on HCV pathogenesis are not well understood. Spectroscopic techniques, transmission electron microscopy and calorimetry were used to better understand the propensity of C124 to fold or to multimerize into NLPs when subjected to different conditions or in the presence of unspecific nucleic acids of equivalent size to cellular microRNAs. The structural analysis indicated that C124 has low propensity to self-folding. On the other hand, for the first time, we show that C124, in the absence of nucleic acids, multimerizes into empty NLPs when subjected to a pH close to its isoelectric point (pH ≈ 12), indicating that assembly is mainly driven by charge neutralization. Isothermal calorimetry data showed that the assembly of NLPs promoted by nucleic acids is enthalpy driven. Additionally, data obtained from fluorescence correlation spectroscopy show that C124, in nanomolar range, was able to interact and to sequester a large number of short unspecific nucleic acids into NLPs. Together, our data showed that the charge neutralization is the major factor for the nucleocapsid-like particles assembly from C-terminal truncated HCV core protein. This finding suggests that HCV core protein may physically interact with unspecific cellular polyanions, which may correspond to microRNAs and mRNAs in a host cell infected by HCV, triggering their confinement into infectious particles.

  15. Charge neutralization as the major factor for the assembly of nucleocapsid-like particles from C-terminal truncated hepatitis C virus core protein

    Directory of Open Access Journals (Sweden)

    Theo Luiz Ferraz de Souza

    2016-11-01

    Full Text Available Background Hepatitis C virus (HCV core protein, in addition to its structural role to form the nucleocapsid assembly, plays a critical role in HCV pathogenesis by interfering in several cellular processes, including microRNA and mRNA homeostasis. The C-terminal truncated HCV core protein (C124 is intrinsically unstructured in solution and is able to interact with unspecific nucleic acids, in the micromolar range, and to assemble into nucleocapsid-like particles (NLPs in vitro. The specificity and propensity of C124 to the assembly and its implications on HCV pathogenesis are not well understood. Methods Spectroscopic techniques, transmission electron microscopy and calorimetry were used to better understand the propensity of C124 to fold or to multimerize into NLPs when subjected to different conditions or in the presence of unspecific nucleic acids of equivalent size to cellular microRNAs. Results The structural analysis indicated that C124 has low propensity to self-folding. On the other hand, for the first time, we show that C124, in the absence of nucleic acids, multimerizes into empty NLPs when subjected to a pH close to its isoelectric point (pH ≈ 12, indicating that assembly is mainly driven by charge neutralization. Isothermal calorimetry data showed that the assembly of NLPs promoted by nucleic acids is enthalpy driven. Additionally, data obtained from fluorescence correlation spectroscopy show that C124, in nanomolar range, was able to interact and to sequester a large number of short unspecific nucleic acids into NLPs. Discussion Together, our data showed that the charge neutralization is the major factor for the nucleocapsid-like particles assembly from C-terminal truncated HCV core protein. This finding suggests that HCV core protein may physically interact with unspecific cellular polyanions, which may correspond to microRNAs and mRNAs in a host cell infected by HCV, triggering their confinement into infectious particles.

  16. Tracking morphological changes and slope instability using spaceborne and ground-based SAR data

    Science.gov (United States)

    Di Traglia, Federico; Nolesini, Teresa; Ciampalini, Andrea; Solari, Lorenzo; Frodella, William; Bellotti, Fernando; Fumagalli, Alfio; De Rosa, Giuseppe; Casagli, Nicola

    2018-01-01

    Stromboli (Aeolian Archipelago, Italy) is an active volcano that is frequently affected by moderate to large mass wasting, which has occasionally triggered tsunamis. With the aim of understanding the relationship between the geomorphologic evolution and slope instability of Stromboli, remote sensing information from space-born Synthetic Aperture Radar (SAR) change detection and interferometry (InSAR) () and Ground Based InSAR (GBInSAR) was compared with field observations and morphological analyses. Ground reflectivity and SqueeSAR™ (an InSAR algorithm for surface deformation monitoring) displacement measurements from X-band COSMO-SkyMed satellites (CSK) were analysed together with displacement measurements from a permanent-sited, Ku-band GBInSAR system. Remote sensing results were compared with a preliminary morphological analysis of the Sciara del Fuoco (SdF) steep volcanic flank, which was carried out using a high-resolution Digital Elevation Model (DEM). Finally, field observations, supported by infrared thermographic surveys (IRT), allowed the interpretation and validation of remote sensing data. The analysis of the entire dataset (collected between January 2010 and December 2014) covers a period characterized by a low intensity of Strombolian activity. This period was punctuated by the occurrence of lava overflows, occurring from the crater terrace evolving downslope toward SdF, and flank eruptions, such as the 2014 event. The amplitude of the CSK images collected between February 22nd, 2010, and December 18th, 2014, highlights that during periods characterized by low-intensity Strombolian activity, the production of materials ejected from the crater terrace towards the SdF is generally low, and erosion is the prevailing process mainly affecting the central sector of the SdF. CSK-SqueeSAR™ and GBInSAR data allowed the identification of low displacements in the SdF, except for high displacement rates (up to 1.5 mm/h) that were measured following both lava

  17. A comparison of SAR ATR performance with information theoretic predictions

    Science.gov (United States)

    Blacknell, David

    2003-09-01

    Performance assessment of automatic target detection and recognition algorithms for SAR systems (or indeed any other sensors) is essential if the military utility of the system / algorithm mix is to be quantified. This is a relatively straightforward task if extensive trials data from an existing system is used. However, a crucial requirement is to assess the potential performance of novel systems as a guide to procurement decisions. This task is no longer straightforward since a hypothetical system cannot provide experimental trials data. QinetiQ has previously developed a theoretical technique for classification algorithm performance assessment based on information theory. The purpose of the study presented here has been to validate this approach. To this end, experimental SAR imagery of targets has been collected using the QinetiQ Enhanced Surveillance Radar to allow algorithm performance assessments as a number of parameters are varied. In particular, performance comparisons can be made for (i) resolutions up to 0.1m, (ii) single channel versus polarimetric (iii) targets in the open versus targets in scrubland and (iv) use versus non-use of camouflage. The change in performance as these parameters are varied has been quantified from the experimental imagery whilst the information theoretic approach has been used to predict the expected variation of performance with parameter value. A comparison of these measured and predicted assessments has revealed the strengths and weaknesses of the theoretical technique as will be discussed in the paper.

  18. Detection of Antibodies to U.S. Isolates of Avian Pneumovirus by a Recombinant Nucleocapsid Protein-Based Sandwich Enzyme-Linked Immunosorbent Assay

    OpenAIRE

    Gulati, Baldev R.; Munir, Shirin; Patnayak, Devi P.; Goyal, Sagar M.; Kapur, Vivek

    2001-01-01

    The nucleocapsid (N) protein of subgroup C (United States-specific) avian pneumovirus (APV/US) was expressed in Escherichia coli, and antibodies to the recombinant N protein were shown to specifically recognize the ≈47-kDa N protein of APV/US by Western immunoblot analysis. The recombinant APV/US N protein was used in a sandwich-capture enzyme-linked immunosorbent assay (ELISA), and the resulting assay was found to be more sensitive and specific than the routine indirect ELISA for the detecti...

  19. The Herpes Simplex Virus Protein pUL31 Escorts Nucleocapsids to Sites of Nuclear Egress, a Process Coordinated by Its N-Terminal Domain.

    Directory of Open Access Journals (Sweden)

    Christina Funk

    2015-06-01

    Full Text Available Progeny capsids of herpesviruses leave the nucleus by budding through the nuclear envelope. Two viral proteins, the membrane protein pUL34 and the nucleo-phosphoprotein pUL31 form the nuclear egress complex that is required for capsid egress out of the nucleus. All pUL31 orthologs are composed of a diverse N-terminal domain with 1 to 3 basic patches and a conserved C-terminal domain. To decipher the functions of the N-terminal domain, we have generated several Herpes simplex virus mutants and show here that the N-terminal domain of pUL31 is essential with basic patches being critical for viral propagation. pUL31 and pUL34 entered the nucleus independently of each other via separate routes and the N-terminal domain of pUL31 was required to prevent their premature interaction in the cytoplasm. Unexpectedly, a classical bipartite nuclear localization signal embedded in this domain was not required for nuclear import of pUL31. In the nucleus, pUL31 associated with the nuclear envelope and newly formed capsids. Viral mutants lacking the N-terminal domain or with its basic patches neutralized still associated with nucleocapsids but were unable to translocate them to the nuclear envelope. Replacing the authentic basic patches with a novel artificial one resulted in HSV1(17+Lox-UL31-hbpmp1mp2, that was viable but delayed in nuclear egress and compromised in viral production. Thus, while the C-terminal domain of pUL31 is sufficient for the interaction with nucleocapsids, the N-terminal domain was essential for capsid translocation to sites of nuclear egress and a coordinated interaction with pUL34. Our data indicate an orchestrated sequence of events with pUL31 binding to nucleocapsids and escorting them to the inner nuclear envelope. We propose a common mechanism for herpesviral nuclear egress: pUL31 is required for intranuclear translocation of nucleocapsids and subsequent interaction with pUL34 thereby coupling capsid maturation with primary

  20. Using InSAR for Characterizing Pyroclastic Flow Deposits at Augustine Volcano Across Two Eruptive Cycles

    Science.gov (United States)

    McAlpin, D. B.; Meyer, F. J.; Lu, Z.; Beget, J. E.

    2014-12-01

    Augustine Island is a small, 8x11 km island in South Central Alaska's lower Cook Inlet. It is approximately 280 km southwest of Anchorage, and occupied entirely by its namesake Augustine Volcano. At Augustine Volcano, SAR data suitable for interferometry is available from 1992 to 2005, from March 2006 to April 2007, and from July 2007 to October 2010. Its last two eruptive episodes, in 1986 and 2006, resulted in substantial pyroclastic flow deposits (PFDs) on the Volcano's north flank. Earlier InSAR analyses of the area, from 1992-1999, identified local subsidence, but no volcano-wide deformation indicative of magma-chamber evacuation. In contrast to previous studies, we use InSAR data to determine a range of geophysical parameters for PFDs emplaced during the Augustine's two most recent eruption cycles. Based on InSAR measurements between 1992 and 2010, we reconstruct the deformation behavior of PFDs emplaced during Augustine's last two eruption cycles. Using a combination of InSAR measurements and modeling, we determine the thickness and long-term deformation of overlaying pyroclastic flow deposits emplaced in 1986 and 2006. Consistent with previous observations of pyroclastic flows, we found that the PFDs on Augustine Island rapidly subsided after emplacement due to an initial compaction of the material. We determined the length of this initial settling period and measured the compaction rate. Subsequent to this initial rapid subsidence, we found that PFD deformation slowed to a more persistent, linear, long-term rate, related to cooling of the deposits. We established that the deposits' contraction rate is linearly related to their thickness and measured the contraction rate. Finally, a study of long term coherence properties of the Augustine PFDs showed remarkable stability of the surface over long time periods. This information provides clues on the structural properties and composition of the emplaced material.

  1. Crustal Deformation along San Andreas Fault System revealed by GPS and Sentinel-1 InSAR

    Science.gov (United States)

    Xu, X.; Sandwell, D. T.

    2017-12-01

    We present a crustal deformation velocity map along the San Andreas Fault System by combining measurements from Sentinel-1 Interferometric Synthetic Aperture Radar (InSAR) and Global Positioning System (GPS) velocity models (CGM V1). We assembled 5 tracks of descending Sentinel-1 InSAR data spanning 2014.11-2017.02, and produced 545 interferograms, each of which covers roughly 250km x 420km area ( 60 bursts). These interferograms are unwrapped using SNAPHU [Chen & Zebker, 2002], with the 2Npi unwrapping ambiguity corrected with a sparse recovery method. We used coherence-based small baseline subset (SBAS) method [Tong & Schmidt, 2016] together with atmospheric correction by common-point stacking [Tymofyeyeva and Fialko, 2015] to construct deformation time series [Xu et. al., 2017]. Then we project the horizontal GPS model and vertical GPS data into satellite line-of-sight directions separately. We first remove the horizontal GPS model from InSAR measurements and perform elevation-dependent atmospheric phase correction. Then we compute the discrepancy between the remaining InSAR measurements and vertical GPS data. We interpolate this discrepancy and remove it from the residual InSAR measurements. Finally, we restore the horizontal GPS model. Preliminary results show that fault creep over the San Jacinto fault, the Elsinore fault, and the San Andreas creeping section is clearly resolved. During the period of drought, the Central Valley of California was subsiding at a high rate (up to 40 cm/yr), while the city of San Jose is uplifting due to recharge, with a quaternary fault acting as a ground water barrier. These findings will be reported during the meeting.

  2. Estimating the Doppler centroid of SAR data

    DEFF Research Database (Denmark)

    Madsen, Søren Nørvang

    1989-01-01

    attractive properties. An evaluation based on an existing SEASAT processor is reported. The time-domain algorithms are shown to be extremely efficient with respect to requirements on calculations and memory, and hence they are well suited to real-time systems where the Doppler estimation is based on raw SAR......After reviewing frequency-domain techniques for estimating the Doppler centroid of synthetic-aperture radar (SAR) data, the author describes a time-domain method and highlights its advantages. In particular, a nonlinear time-domain algorithm called the sign-Doppler estimator (SDE) is shown to have...... data. For offline processors where the Doppler estimation is performed on processed data, which removes the problem of partial coverage of bright targets, the ΔE estimator and the CDE (correlation Doppler estimator) algorithm give similar performance. However, for nonhomogeneous scenes it is found...

  3. Full Polarimetric Synthetic Aperture Radar (SAR) Data for ionosphere observation - A comparative study

    Science.gov (United States)

    Mohanty, S.; Singh, G.

    2017-12-01

    Ionosphere, predominantly, govern the propagation of radio waves, especially at L-band and lower frequencies. Small-scale, rapid fluctuations in the electron density, termed as scintillation phenomenon, cause rapid variations in signal amplitude and phase. Scintillation studies have been done using ground-based radio transmitter and beacon GPS signals. In this work, attempt has been made to utilize full polarimetric synthetic aperture radar (SAR) satellite signal at L-band (1.27 GHz) to develop a new measurement index for SAR signal intensity fluctuation. Datasets acquired from Japan's latest Advanced Land Observation Satellite (ALOS)-2 over the Indian subcontinent on two different dates, with varying ionospheric activities, have been utilized to compare the index. A 20% increase in the index values for a scintillation-affected day has been observed. The result coincides with the nature of ionospheric scintillation pattern typically observed over the equatorial belt. Total electron content values, for the two dates of acquisition, obtained from freely available Ionosphere Exchange (IONEX) data have been used to validate the varying ionospheric activities as well as the trend in index results. Another interesting finding of the paper is the demarcation of the equatorial anomaly belt. The index values are comparatively higher at these latitudes on a scintillation-affected day. Furthermore, the SAR signal intensity fluctuation index has great potential in being used as a preliminary measurement index to identify low frequency SAR data affected by ionospheric scintillation.

  4. Near Surface Soil Moisture Estimation Using SAR Images: A Case Study in the Mediterranean Area of Catalonia

    Science.gov (United States)

    Reppucci, Antonio; Moreno, Laura

    2010-12-01

    Information on Soil moisture spatial and temporal evolution is of great importance for managing the utilization of soils and vegetation, in particular in environments where the water resources are scarce. In-situ measurement of soil moisture are costly and not able to sample the spatial behaviour of a whole region. Thanks to their all weather capability and wide coverage, Synthetic Aperture Radar (SAR) images offer the opportunity to monitor large area with high resolution. This study presents the results of a project, partially founded by the Catalan government, to improve the monitoring of soil moisture using Earth Observation data. In particular the project is focused on the calibration of existing semi-empirical algorithm in the area of study. This will be done using co-located SAR and in-situ measurements acquired during several field campaigns. Observed deviations between SAR measurements and in-situ measurement are discussed.

  5. SAR Target Recognition via Supervised Discriminative Dictionary Learning and Sparse Representation of the SAR-HOG Feature

    Directory of Open Access Journals (Sweden)

    Shengli Song

    2016-08-01

    Full Text Available Automatic target recognition (ATR in synthetic aperture radar (SAR images plays an important role in both national defense and civil applications. Although many methods have been proposed, SAR ATR is still very challenging due to the complex application environment. Feature extraction and classification are key points in SAR ATR. In this paper, we first design a novel feature, which is a histogram of oriented gradients (HOG-like feature for SAR ATR (called SAR-HOG. Then, we propose a supervised discriminative dictionary learning (SDDL method to learn a discriminative dictionary for SAR ATR and propose a strategy to simplify the optimization problem. Finally, we propose a SAR ATR classifier based on SDDL and sparse representation (called SDDLSR, in which both the reconstruction error and the classification error are considered. Extensive experiments are performed on the MSTAR database under standard operating conditions and extended operating conditions. The experimental results show that SAR-HOG can reliably capture the structures of targets in SAR images, and SDDL can further capture subtle differences among the different classes. By virtue of the SAR-HOG feature and SDDLSR, the proposed method achieves the state-of-the-art performance on MSTAR database. Especially for the extended operating conditions (EOC scenario “Training 17 ∘ —Testing 45 ∘ ”, the proposed method improves remarkably with respect to the previous works.

  6. SAR Product Improvements and Enhancements - SARprises

    Science.gov (United States)

    2013-09-30

    paper on current fields at Orkney, Scotland, was accepted for publication in IEEE - TGARS and is currently in press (available on IEEE Xplore as Early...Sea surface velocity vector retrieval using dual-beam interferometry: First demonstration, IEEE TGARS, 43, 2494- 2502, 2005. [2] Chapron, B., F...Bight by airborne along-track interferometric SAR, Proc. IGARSS 2002, 1822-1824, IEEE , 2002. [4] Bjerklie, D.M., S.L. Dingman, C.J. Vorosmarty, C.H

  7. Multiplier-free filters for wideband SAR

    DEFF Research Database (Denmark)

    Dall, Jørgen; Christensen, Erik Lintz

    2001-01-01

    This paper derives a set of parameters to be optimized when designing filters for digital demodulation and range prefiltering in SAR systems. Aiming at an implementation in field programmable gate arrays (FPGAs), an approach for the design of multiplier-free filters is outlined. Design results...... are presented in terms of filter complexity and performance. One filter has been coded in VHDL and preliminary results indicate that the filter can meet a 2 GHz input sample rate....

  8. Low cost realization of space-borne synthectic aperture radar - MicroSAR

    Science.gov (United States)

    Carter, D.; Hall, C.

    Spaceborne Earth Observation data has been used for decades in the areas of meteorology and optical imaging. The systems and satellites have, in the main, been owned and operated by a few government institutions and agencies. More recently industrial organizations in North America have joined the list. Few of these, however, include Synthetic Aperture Radar (SAR)., although the additional utility in terms of all weather, 24 hour measurement capability over the Earth's surface is well recognized. Three major factors explain this:1) Relationships between the SAR measurements of radar backscatter and images to the specific information needs have not been seen as sufficiently well understood or robust2) Availability of suitable sources, at the relevant performance and data quality have been inadequate to provide service assurance that is necessary to sustain commercial businesses3) Costs associated with building, launching and operating spaceborne SAR have not been low enough as to achieve an acceptable return of investment. A significant amount of research and development has been undertaken throughout the World to establish reliable and robust algorithms for information extraction from SAR data. Much of this work has been carried out utilizing airborne systems over localized and carefully controlled regions. In addition, an increasing number of pilot services have been offered by geo-information providers. This has allowed customer confidence to grow. With the status of spaceborne SAR being effectively in the development phase, commercial funding has been scarce, and there has been need to rely on government and institutional budgets. Today the increasing maturity of the technology of SAR and its applications is beginning to attract the commercial sector. This is the funding necessary to realize sufficient assets to be able to provide a robust supply of SAR data to the geo-information providers and subsequently a reliable service to customers. Reducing the costs

  9. Potential of X-Band TerraSAR-X and COSMO-SkyMed SAR Data for the Assessment of Physical Soil Parameters

    Directory of Open Access Journals (Sweden)

    Azza Gorrab

    2015-01-01

    Full Text Available The aim of this paper is to analyze the potential of X-band SAR measurements (COSMO-SkyMed and TerraSAR-X made over bare soils for the estimation of soil moisture and surface geometry parameters at a semi-arid site in Tunisia (North Africa. Radar signals acquired with different configurations (HH and VV polarizations, incidence angles of 26° and 36° are statistically compared with ground measurements (soil moisture and roughness parameters. The radar measurements are found to be highly sensitive to the various soil parameters of interest. A linear relationship is determined for the radar signals as a function of volumetric soil moisture, and a logarithmic correlation is observed between the radar signals and three surface roughness parameters: the root mean square height (Hrms, the parameter Zs = Hrms2/l (where l is the correlation length and the parameter Zg = Hrms × (Hrms/lα (where α is the power of the surface height correlation function. The highest dynamic sensitivity is observed for Zg at high incidence angles. Finally, the performance of different physical and semi-empirical backscattering models (IEM, Baghdadi-calibrated IEM and Dubois models is compared with SAR measurements. The results provide an indication of the limits of validity of the IEM and Dubois models, for various radar configurations and roughness conditions. Considerable improvements in the IEM model performance are observed using the Baghdadi-calibrated version of this model.

  10. Polarimetric SAR image classification based on discriminative dictionary learning model

    Science.gov (United States)

    Sang, Cheng Wei; Sun, Hong

    2018-03-01

    Polarimetric SAR (PolSAR) image classification is one of the important applications of PolSAR remote sensing. It is a difficult high-dimension nonlinear mapping problem, the sparse representations based on learning overcomplete dictionary have shown great potential to solve such problem. The overcomplete dictionary plays an important role in PolSAR image classification, however for PolSAR image complex scenes, features shared by different classes will weaken the discrimination of learned dictionary, so as to degrade classification performance. In this paper, we propose a novel overcomplete dictionary learning model to enhance the discrimination of dictionary. The learned overcomplete dictionary by the proposed model is more discriminative and very suitable for PolSAR classification.

  11. Partial pressure (or fugacity) of carbon dioxide, salinity and other variables collected from Surface underway observations using Carbon dioxide (CO2) gas analyzer, Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement and other instruments from G.O. SARS in the Barents Sea, North Atlantic Ocean and others from 2009-01-18 to 2009-07-17 (NCEI Accession 0157383)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NCEI Accession 0157383 includes Surface underway, chemical, meteorological and physical data collected from G.O. SARS in the Barents Sea, North Atlantic Ocean, North...

  12. Partial pressure (or fugacity) of carbon dioxide, salinity and other variables collected from Surface underway observations using Carbon dioxide (CO2) gas analyzer, Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement and other instruments from G.O. SARS in the Norwegian Sea from 2008-11-13 to 2008-12-10 (NCEI Accession 0157353)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NCEI Accession 0157353 includes Surface underway, chemical, meteorological and physical data collected from G.O. SARS in the Norwegian Sea from 2008-11-13 to...

  13. Partial pressure (or fugacity) of carbon dioxide, salinity and other variables collected from Surface underway observations using Carbon dioxide (CO2) gas analyzer, Shower head chamber equilibrator for autonomous carbon dioxide (CO2) measurement and other instruments from G.O. SARS in the Barents Sea, North Greenland Sea and others from 2007-02-12 to 2007-10-28 (NCEI Accession 0157392)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — NCEI Accession 0157392 includes Surface underway, chemical, meteorological and physical data collected from G.O. SARS in the Barents Sea, North Greenland Sea, North...

  14. SAR11 bacteria linked to ocean anoxia and nitrogen loss

    DEFF Research Database (Denmark)

    Tsementzi, Despina; Wu, Jieying; Deutsch, Samuel

    2016-01-01

    Bacteria of the SAR11 clade constitute up to one half of all microbial cells in the oxygen-rich surface ocean. SAR11 bacteria are also abundant in oxygen minimum zones (OMZs), where oxygen falls below detection and anaerobic microbes have vital roles in converting bioavailable nitrogen to N2 gas...... activity. These results link SAR11 to pathways of ocean nitrogen loss, redefining the ecological niche of Earth’s most abundant organismal group....

  15. Prototype Theory Based Feature Representation for PolSAR Images

    OpenAIRE

    Huang Xiaojing; Yang Xiangli; Huang Pingping; Yang Wen

    2016-01-01

    This study presents a new feature representation approach for Polarimetric Synthetic Aperture Radar (PolSAR) image based on prototype theory. First, multiple prototype sets are generated using prototype theory. Then, regularized logistic regression is used to predict similarities between a test sample and each prototype set. Finally, the PolSAR image feature representation is obtained by ensemble projection. Experimental results of an unsupervised classification of PolSAR images show that our...

  16. SAR Subsets for Selected Field Sites, 2007-2010

    Data.gov (United States)

    National Aeronautics and Space Administration — ABSTRACT: This data set provides Synthetic Aperture Radar (SAR) images for 42 selected sites from various terrestrial ecology and meteorological monitoring networks...

  17. SAR Subsets for Selected Field Sites, 2007-2010

    Data.gov (United States)

    National Aeronautics and Space Administration — This data set provides Synthetic Aperture Radar (SAR) images for 42 selected sites from various terrestrial ecology and meteorological monitoring networks including...

  18. Applications of SAR Interferometry in Earth and Environmental Science Research

    Science.gov (United States)

    Zhou, Xiaobing; Chang, Ni-Bin; Li, Shusun

    2009-01-01

    This paper provides a review of the progress in regard to the InSAR remote sensing technique and its applications in earth and environmental sciences, especially in the past decade. Basic principles, factors, limits, InSAR sensors, available software packages for the generation of InSAR interferograms were summarized to support future applications. Emphasis was placed on the applications of InSAR in seismology, volcanology, land subsidence/uplift, landslide, glaciology, hydrology, and forestry sciences. It ends with a discussion of future research directions. PMID:22573992

  19. Applications of SAR Interferometry in Earth and Environmental Science Research

    Directory of Open Access Journals (Sweden)

    Xiaobing Zhou

    2009-03-01

    Full Text Available This paper provides a review of the progress in regard to the InSAR remote sensing technique and its applications in earth and environmental sciences, especially in the past decade. Basic principles, factors, limits, InSAR sensors, available software packages for the generation of InSAR interferograms were summarized to support future applications. Emphasis was placed on the applications of InSAR in seismology, volcanology, land subsidence/uplift, landslide, glaciology, hydrology, and forestry sciences. It ends with a discussion of future research directions.

  20. Applications of SAR Interferometry in Earth and Environmental Science Research.

    Science.gov (United States)

    Zhou, Xiaobing; Chang, Ni-Bin; Li, Shusun

    2009-01-01

    This paper provides a review of the progress in regard to the InSAR remote sensing technique and its applications in earth and environmental sciences, especially in the past decade. Basic principles, factors, limits, InSAR sensors, available software packages for the generation of InSAR interferograms were summarized to support future applications. Emphasis was placed on the applications of InSAR in seismology, volcanology, land subsidence/uplift, landslide, glaciology, hydrology, and forestry sciences. It ends with a discussion of future research directions.

  1. Genome organization of the SARS-CoV

    DEFF Research Database (Denmark)

    Xu, Jing; Hu, Jianfei; Wang, Jing

    2003-01-01

    Annotation of the genome sequence of the SARS-CoV (severe acute respiratory syndrome-associated coronavirus) is indispensable to understand its evolution and pathogenesis. We have performed a full annotation of the SARS-CoV genome sequences by using annotation programs publicly available or devel......Annotation of the genome sequence of the SARS-CoV (severe acute respiratory syndrome-associated coronavirus) is indispensable to understand its evolution and pathogenesis. We have performed a full annotation of the SARS-CoV genome sequences by using annotation programs publicly available...

  2. Post-Eruptive Inflation of Okmok Volcano, Alaska, from InSAR, 2008–2014

    Directory of Open Access Journals (Sweden)

    Feifei Qu

    2015-12-01

    Full Text Available Okmok, a ~10-km wide caldera that occupies most of the northeastern end of Umnak Island, is one of the most active volcanoes in the Aleutian arc. The most recent eruption at Okmok during July–August 2008 was by far its largest and most explosive since at least the early 19th century. We investigate post-eruptive magma supply and storage at the volcano during 2008–2014 by analyzing all available synthetic aperture radar (SAR images of Okmok acquired during that time period using the multi-temporal InSAR technique. Data from the C-band Envisat and X-band TerraSAR-X satellites indicate that Okmok started inflating very soon after the end of 2008 eruption at a time-variable rate of 48–130 mm/y, consistent with GPS measurements. The “model-assisted” phase unwrapping method is applied to improve the phase unwrapping operation for long temporal baseline pairs. The InSAR time-series is used as input for deformation source modeling, which suggests magma accumulating at variable rates in a shallow storage zone at ~3.9 km below sea level beneath the summit caldera, consistent with previous studies. The modeled volume accumulation in the six years following the 2008 eruption is ~75% of the 1997 eruption volume and ~25% of the 2008 eruption volume.

  3. Pre-2014 mudslides at Oso revealed by InSAR and multi-source DEM analysis

    Science.gov (United States)

    Kim, J. W.; Lu, Z.; QU, F.

    2014-12-01

    The landslide is a process that results in the downward and outward movement of slope-reshaping materials including rocks and soils and annually causes the loss of approximately $3.5 billion and tens of casualties in the United States. The 2014 Oso mudslide was an extreme event costing nearly 40 deaths and damaging civilian properties. Landslides are often unpredictable, but in many cases, catastrophic events are repetitive. Historic record in the Oso mudslide site indicates that there have been serial events in decades, though the extent of sliding events varied from time to time. In our study, the combination of multi-source DEMs, InSAR, and time-series InSAR analysis has enabled to characterize the Oso mudslide. InSAR results from ALOS PALSAR show that there was no significant deformation between mid-2006 and 2011. The combination of time-series InSAR analysis and old-dated DEM indicated revealed topographic changes associated the 2006 sliding event, which is confirmed by the difference of multiple LiDAR DEMs. Precipitation and discharge measurements before the 2006 and 2014 landslide events did not exhibit extremely anomalous records, suggesting the precipitation is not the controlling factor in determining the sliding events at Oso. The lack of surface deformation during 2006-2011 and weak correlation between the precipitation and the sliding event, suggest other factors (such as porosity) might play a critical role on the run-away events at this Oso and other similar landslides.

  4. Observations and Mitigation of RFI in ALOS PALSAR SAR Data; Implications for the Desdyni Mission

    Science.gov (United States)

    Rosen, Paul A.; Hensley, Scott; Le, Charles

    2008-01-01

    Initial examination of ALOS PALSAR synthetic aperture radar (SAR) data has indicated significant radio frequency interference (RFI) in several geographic locations around the world. RFI causes significant reduction in image contrast, introduces periodic and quasi-periodic image artifacts, and introduces significant phase noise in repeat pass interferometric data reduction. The US National Research Council Decadal Survey of Earth Science has recommended DESDynI, a Deformation, Ecosystems, and Dynamics of Ice satellite mission comprising an L-band polarimetric radar configured for repeat pass interferometry. There is considerable interest internationally in other future L-band and lower frequency systems as well. Therefore the issues of prevalence and possibilities of mitigation of RFI in these crowded frequency bands is of considerable interest. RFI is observed in ALOS PALSAR in California, USA, and in southern Egypt in data examined to date. Application of several techniques for removing it from the data prior to SAR image formation, ranging from straightforward spectral normalization to time-domain, multi-phase filtering techniques are considered. Considerable experience has been gained from the removal of RFI from P-band acquired by the GeoSAR system. These techniques applied to the PALSAR data are most successful when the bandwidth of any particular spectral component of the RFI is narrow. Performance impacts for SAR imagery and interferograms are considered in the context of DESDynI measurement requirements.

  5. Dynamic Deformation of ETNA Volcano Observed by GPS and SAR Interferometry

    Science.gov (United States)

    Lundgren, P.; Rosen, P.; Webb, F.; Tesauro, M.; Lanari, R.; Sansosi, E.; Puglisi, G.; Bonforte, A.; Coltelli, M.

    1999-01-01

    Synthetic aperture radar (SAR) interferometry and GPS have shown that during the quiescent period from 1993-1995 Mt. Etna volcano, Italy, inflated. Since the initiation of eruptive activity since late 1995 the deformation has been more contentious. We will explore the detailed deformation during the period from 1995-1996 spanning the late stages of inflation and the beginning of eruptive activity. We use SAR interferometry and GPS data to measure the volcano deformation. We invert the observed deformation for both simple point source. le crack elastic sources or if warranted for a spheroidal pressure So In particular, we will examine the evolution of the inflation and the transition to a lesser deflation observed at the end of 1995. We use ERS-1/2 SAR data from both ascending and descending passes to allow for dense temporal 'sampling of the deformation and to allow us to critically assess atmospheric noise. Preliminary results from interferometry suggest that the inflation rate accelerated prior to resumption of activity in 1995, while GPS data suggest a more steady inflation with some fluctuation following the start of activity. This study will compare and contrast the interferometric SAR and GPS results and will address the strengths and weaknesses of each technique towards volcano deformation studies.

  6. Multiscale-Driven approach to detecting change in Synthetic Aperture Radar (SAR) imagery

    Science.gov (United States)

    Gens, R.; Hogenson, K.; Ajadi, O. A.; Meyer, F. J.; Myers, A.; Logan, T. A.; Arnoult, K., Jr.

    2017-12-01

    Detecting changes between Synthetic Aperture Radar (SAR) images can be a useful but challenging exercise. SAR with its all-weather capabilities can be an important resource in identifying and estimating the expanse of events such as flooding, river ice breakup, earthquake damage, oil spills, and forest growth, as it can overcome shortcomings of optical methods related to cloud cover. However, detecting change in SAR imagery can be impeded by many factors including speckle, complex scattering responses, low temporal sampling, and difficulty delineating boundaries. In this presentation we use a change detection method based on a multiscale-driven approach. By using information at different resolution levels, we attempt to obtain more accurate change detection maps in both heterogeneous and homogeneous regions. Integrated within the processing flow are processes that 1) improve classification performance by combining Expectation-Maximization algorithms with mathematical morphology, 2) achieve high accuracy in preserving boundaries using measurement level fusion techniques, and 3) combine modern non-local filtering and 2D-discrete stationary wavelet transform to provide robustness against noise. This multiscale-driven approach to change detection has recently been incorporated into the Alaska Satellite Facility (ASF) Hybrid Pluggable Processing Pipeline (HyP3) using radiometrically terrain corrected SAR images. Examples primarily from natural hazards are presented to illustrate the capabilities and limitations of the change detection method.

  7. Monitoring Volcano Deformation in the Northernmost Andes with ALOS InSAR Time-Series

    Science.gov (United States)

    Morales Rivera, A. M.; Amelung, F.

    2014-12-01

    Satellite-based Interferometric Synthetic Aperture Radar (InSAR) is well known to be used as a volcano monitoring tool, providing the opportunity to conduct local and regional surveys to detect and measure volcanic deformation. The signals detected by InSAR on volcanoes can be related to various phenomena, such as volume changes in magmatic reservoirs, compaction of recent deposits, changes in hydrothermal activity, and flank instability. The InSAR time-series method has well documented examples of these phenomena, including precursory inflation of magma reservoirs months prior to volcanic eruptions, proving its potential for early warning systems. We use the ALOS-1 satellite from the Japanese Aerospace Exploration Agency (JAXA), which acquired a global L-band data set of nearly 20 acquisitions during 2007-2011, to make an InSAR time-series analysis using the Small Baseline method (SBAS). Our analysis covers all of the volcanoes in Colombia, Ecuador, and Peru that are cataloged by the Global Volcanism Program. We present results showing time-dependent ground deformation on an near the volcanoes, and present kinematic models to constrain the characteristics of the magmatic sources for the cases in which the deformation is likely related to changes in magma reservoir pressurization.

  8. Post-eruptive inflation of Okmok Volcano, Alaska, from InSAR, 2008–2014

    Science.gov (United States)

    Qu, Feifei; Lu, Zhong; Poland, Michael; Freymueller, Jeffrey T.; Zhang, Qin; Jung, Hyung-Sup

    2016-01-01

    Okmok, a ~10-km wide caldera that occupies most of the northeastern end of Umnak Island, is one of the most active volcanoes in the Aleutian arc. The most recent eruption at Okmok during July-August 2008 was by far its largest and most explosive since at least the early 19th century. We investigate post-eruptive magma supply and storage at the volcano during 2008–2014 by analyzing all available synthetic aperture radar (SAR) images of Okmok acquired during that time period using the multi-temporal InSAR technique. Data from the C-band Envisat and X-band TerraSAR-X satellites indicate that Okmok started inflating very soon after the end of 2008 eruption at a time-variable rate of 48-130 mm/y, consistent with GPS measurements. The “model-assisted” phase unwrapping method is applied to improve the phase unwrapping operation for long temporal baseline pairs. The InSAR time-series is used as input for deformation source modeling, which suggests magma accumulating at variable rates in a shallow storage zone at ~3.9 km below sea level beneath the summit caldera, consistent with previous studies. The modeled volume accumulation in the 6 years following the 2008 eruption is ~75% of the 1997 eruption volume and ~25% of the 2008 eruption volume.

  9. Applicability of interferometric SAR technology to ground movement and pipeline monitoring

    Science.gov (United States)

    Grivas, Dimitri A.; Bhagvati, Chakravarthy; Schultz, B. C.; Trigg, Alan; Rizkalla, Moness

    1998-03-01

    This paper summarizes the findings of a cooperative effort between NOVA Gas Transmission Ltd. (NGTL), the Italian Natural Gas Transmission Company (SNAM), and Arista International, Inc., to determine whether current remote sensing technologies can be utilized to monitor small-scale ground movements over vast geographical areas. This topic is of interest due to the potential for small ground movements to cause strain accumulation in buried pipeline facilities. Ground movements are difficult to monitor continuously, but their cumulative effect over time can have a significant impact on the safety of buried pipelines. Interferometric synthetic aperture radar (InSAR or SARI) is identified as the most promising technique of those considered. InSAR analysis involves combining multiple images from consecutive passes of a radar imaging platform. The resulting composite image can detect changes as small as 2.5 to 5.0 centimeters (based on current analysis methods and radar satellite data of 5 centimeter wavelength). Research currently in progress shows potential for measuring ground movements as small as a few millimeters. Data needed for InSAR analysis is currently commercially available from four satellites, and additional satellites are planned for launch in the near future. A major conclusion of the present study is that InSAR technology is potentially useful for pipeline integrity monitoring. A pilot project is planned to test operational issues.

  10. Severe acute respiratory syndrome (SARS) in a paediatric cluster in Singapore

    Energy Technology Data Exchange (ETDEWEB)

    Tsou, Ian Y.; Kaw, Gregory J.; Chee, Thomas S. [Department of Diagnostic Radiology, Tan Tock Seng Hospital, 11 Jalan Tan Tock Seng, 308433, Singapore (Singapore); Loh, Lik Eng; Chan, Irene [Department of Paediatric Medicine, KK Women' s and Children' s Hospital, 100 Bukit Timah Road, 229899, Singapore (Singapore)

    2004-01-01

    Severe acute respiratory syndrome (SARS) is a major infectious disease pandemic that occurred in early 2003, and one of the diagnostic criteria is the presence of chest radiographic findings. To describe the radiographic features of SARS in a cluster of affected children. The chest radiographs of four related children ranging in age from 18 months to 9 years diagnosed as having SARS were reviewed for the presence of air-space shadowing, air bronchograms, peribronchial thickening, interstitial disease, pleural effusion, pneumothorax, hilar lymphadenopathy and mediastinal widening. Ill-defined air-space shadowing was the common finding in all the children. The distribution was unifocal or multifocal. No other findings were seen on the radiographs. None of the children developed radiographic findings consistent with acute respiratory distress syndrome. All four children showed significant resolution of the radiographic findings 4-6 days after the initial radiograph. Early recognition of these features is important in implementing isolation and containment measures to prevent the spread of infection. SARS in children appears to manifest as a milder form of the disease as compared to adults. (orig.)

  11. A Constellation of CubeSat InSAR Sensors for Rapid-Revisit Surface Deformation Studies

    Science.gov (United States)

    Wye, L.; Lee, S.; Yun, S. H.; Zebker, H. A.; Stock, J. D.; Wicks, C. W., Jr.; Doe, R.

    2016-12-01

    The 2007 NRC Decadal Survey for Earth Sciences highlights three major Earth surface deformation themes: 1) solid-earth hazards and dynamics; 2) human health and security; and 3) land-use change, ecosystem dynamics and biodiversity. Space-based interferometric synthetic aperture radar (InSAR) is a key change detection tool for addressing these themes. Here, we describe the mission and radar payload design for a constellation of S-band InSAR sensors specifically designed to provide the global, high temporal resolution, sub-cm level deformation accuracy needed to address some of the major Earth system goals. InSAR observations with high temporal resolution are needed to properly monitor certain nonlinearly time-varying features (e.g., unstable volcanoes, active fault lines, and heavily-used groundwater or hydrocarbon reservoirs). Good temporal coverage is also needed to reduce atmospheric artifacts by allowing multiple acquisitions to be averaged together, since each individual SAR measurement is corrupted by up to several cm of atmospheric noise. A single InSAR platform is limited in how often it can observe a given scene without sacrificing global spatial coverage. Multiple InSAR platforms provide the spatial-temporal flexibility required to maximize the science return. However, building and launching multiple InSAR platforms is cost-prohibitive for traditional satellites. SRI International (SRI) and our collaborators are working to exploit developments in nanosatellite technology, in particular the emergence of the CubeSat standard, to provide high-cadence InSAR capabilities in an affordable package. The CubeSat Imaging Radar for Earth Science (CIRES) subsystem, a prototype SAR elec­tronics package developed by SRI with support from a 2014 NASA ESTO ACT award, is specifically scaled to be a drop-in radar solution for resource-limited delivery systems like CubeSats and small airborne vehicles. Here, we present our mission concept and flow-down requirements for a

  12. Mechanisms of the electron density depletion in the SAR arc region

    Directory of Open Access Journals (Sweden)

    A. V. Pavlov

    1996-02-01

    Full Text Available This study compares the measurements of electron density and temperature and the integral airglow intensity at 630 nm in the SAR arc region and slightly south of this (obtained by the Isis 2 spacecraft during the 18 December 1971 magnetic storm, with the model results obtained using the time dependent one-dimensional mathematical model of the Earth\\'s ionosphere and plasmasphere. The explicit expression in the third Enskog approximation for the electron thermal conductivity coefficient in the multicomponent mixture of ionized gases and a simplified calculation method for this coefficient presents an opportunity to calculate more exactly the electron temperature and density and 630 nm emission within SAR arc region are used in the model. Collisions between N2 and hot thermal electrons in the SAR arc region produce vibrationally excited nitrogen molecules. It appears that the loss rate of O+(4S due to reactions with the vibrationally excited nitrogen is enough to explain electron density depression by a factor of two at F-region heights and the topside ionosphere density variations within the SAR arc if the erosion of plasma within geomagnetic field tubes, during the main phase of the geomagnetic storm and subsequent filling of geomagnetic tubes during the recovery phase, are considered. To explain the disagreement by a factor 1.5 between the observed and modeled SAR arc electron densities an additional plasma drift velocity ~–30 m s–1 in the ion continuity equations is needed during the recovery phase. This additional plasma drift velocity is likely caused by the transition from convecting to corotating flux tubes on the equatorward wall of the trough. The electron densities and temperatures and 630 nm integral intensity at the SAR arc and slightly south of this region as measured for the 18 December 1971 magnetic storm were correctly described by the model without perpendicular electric fields. Within this model framework the effect of the

  13. Mechanisms of the electron density depletion in the SAR arc region

    Directory of Open Access Journals (Sweden)

    A. V. Pavlov

    Full Text Available This study compares the measurements of electron density and temperature and the integral airglow intensity at 630 nm in the SAR arc region and slightly south of this (obtained by the Isis 2 spacecraft during the 18 December 1971 magnetic storm, with the model results obtained using the time dependent one-dimensional mathematical model of the Earth's ionosphere and plasmasphere. The explicit expression in the third Enskog approximation for the electron thermal conductivity coefficient in the multicomponent mixture of ionized gases and a simplified calculation method for this coefficient presents an opportunity to calculate more exactly the electron temperature and density and 630 nm emission within SAR arc region are used in the model. Collisions between N2 and hot thermal electrons in the SAR arc region produce vibrationally excited nitrogen molecules. It appears that the loss rate of O+(4S due to reactions with the vibrationally excited nitrogen is enough to explain electron density depression by a factor of two at F-region heights and the topside ionosphere density variations within the SAR arc if the erosion of plasma within geomagnetic field tubes, during the main phase of the geomagnetic storm and subsequent filling of geomagnetic tubes during the recovery phase, are considered. To explain the disagreement by a factor 1.5 between the observed and modeled SAR arc electron densities an additional plasma drift velocity ~–30 m s–1 in the ion continuity equations is needed during the recovery phase. This additional plasma drift velocity is likely caused by the transition from convecting to corotating flux tubes on the equatorward wall of the trough. The electron densities and temperatures and 630 nm integral intensity at the SAR arc and slightly south of this region as measured for the 18 December 1971 magnetic storm were correctly described by the model without perpendicular electric fields

  14. Answering the right question - integration of InSAR with other datasets

    Science.gov (United States)

    Holley, Rachel; McCormack, Harry; Burren, Richard

    2014-05-01

    The capabilities of satellite Interferometric Synthetic Aperture Radar (InSAR) are well known, and utilized across a wide range of academic and commercial applications. However there is a tendency, particularly in commercial applications, for users to ask 'What can we study with InSAR?'. When establishing a new technique this approach is important, but InSAR has been possible for 20 years now and, even accounting for new and innovative algorithms, this ground has been thoroughly explored. Too many studies conclude 'We show the ground is moving here, by this much', and mention the wider context as an afterthought. The focus needs to shift towards first asking the right questions - in fields as diverse as hazard awareness, resource optimization, financial considerations and pure scientific enquiry - and then working out how to achieve the best possible answers. Depending on the question, InSAR (and ground deformation more generally) may provide a large or small contribution to the overall solution, and there are usually benefits to integrating a number of techniques to capitalize on the complementary capabilities and provide the most useful measurements. However, there is still a gap between measurements and answers, and unlocking the value of the data relies heavily on appropriate visualization, integrated analysis, communication between technique and application experts, and appropriate use of modelling. We present a number of application examples, and demonstrate how their usefulness can be transformed by moving from a focus on data to answers - integrating complementary geodetic, geophysical and geological datasets and geophysical modeling with appropriate visualization, to enable comprehensive solution-focused interpretation. It will also discuss how forthcoming developments are likely to further advance realisation of the full potential satellite InSAR holds.

  15. Remote Monitoring of Groundwater Overdraft Using GRACE and InSAR

    Science.gov (United States)

    Scher, C.; Saah, D.

    2017-12-01

    Gravity Recovery and Climate Experiment (GRACE) data paired with radar-derived analyses of volumetric changes in aquifer storage capacity present a viable technique for remote monitoring of aquifer depletion. Interferometric Synthetic Aperture Radar (InSAR) analyses of ground level subsidence can account for a significant portion of mass loss observed in GRACE data and provide information on point-sources of overdraft. This study summed one water-year of GRACE monthly mass change grids and delineated regions with negative water storage anomalies for further InSAR analyses. Magnitude of water-storage anomalies observed by GRACE were compared to InSAR-derived minimum volumetric changes in aquifer storage capacity as a result of measurable compaction at the surface. Four major aquifers were selected within regions where GRACE observed a net decrease in water storage (Central Valley, California; Mekong Delta, Vietnam; West Bank, occupied Palestinian Territory; and the Indus Basin, South Asia). Interferogram imagery of the extent and magnitude of subsidence within study regions provided estimates for net minimum volume of groundwater extracted between image acquisitions. These volumetric estimates were compared to GRACE mass change grids to resolve a percent contribution of mass change observed by GRACE likely due to groundwater overdraft. Interferograms revealed characteristic cones of depression within regions of net mass loss observed by GRACE, suggesting point-source locations of groundwater overdraft and demonstrating forensic potential for the use of InSAR and GRACE data in remote monitoring of aquifer depletion. Paired GRACE and InSAR analyses offer a technique to increase the spatial and temporal resolution of remote applications for monitoring groundwater overdraft in addition to providing a novel parameter - measurable vertical deformation at the surface - to global groundwater models.

  16. Ka-band SAR interferometry studies for the SWOT mission

    Science.gov (United States)

    Fernandez, D. E.; Fu, L.; Rodriguez, E.; Hodges, R.; Brown, S.

    2008-12-01

    The primary objective of the NRC Decadal Survey recommended SWOT (Surface Water and Ocean Topography) Mission is to measure the water elevation of the global oceans, as well as terrestrial water bodies (such as rivers, lakes, reservoirs, and wetlands), to answer key scientific questions on the kinetic energy of ocean circulation, the spatial and temporal variability of the world's surface freshwater storage and discharge, and to provide societal benefits on predicting climate change, coastal zone management, flood prediction, and water resources management. The SWOT mission plans to carry the following suite of microwave instruments: a Ka-band interferometer, a dual-frequency nadir altimeter, and a multi-frequency water-vapor radiometer dedicated to measuring wet tropospheric path delay to correct the radar measurements. We are currently funded by the NASA Earth Science Technology Office (ESTO) Instrument Incubator Program (IIP) to reduce the risk of the main technological drivers of SWOT, by addressing the following technologies: the Ka-band radar interferometric antenna design, the on-board interferometric SAR processor, and the internally calibrated high-frequency radiometer. The goal is to significantly enhance the readiness level of the new technologies required for SWOT, while laying the foundations for the next-generation missions to map water elevation for studying Earth. The first two technologies address the challenges of the Ka-band SAR interferometry, while the high- frequency radiometer addresses the requirement for small-scale wet tropospheric corrections for coastal zone applications. In this paper, we present the scientific rational, need and objectives behind these technology items currently under development.

  17. Monitoring of surface deformation in open pit mine using DInSAR time-series: a case study in the N5W iron mine (Carajás, Brazil) using TerraSAR-X data

    Science.gov (United States)

    Mura, José C.; Paradella, Waldir R.; Gama, Fabio F.; Santos, Athos R.; Galo, Mauricio; Camargo, Paulo O.; Silva, Arnaldo Q.; Silva, Guilherme G.

    2014-10-01

    We present an investigation of surface deformation using Differential SAR Interferometry (DInSAR) time-series carried out in an active open pit iron mine, the N5W, located in the Carajás Mineral Province (Brazilian Amazon region), using 33 TerraSAR-X (TSX-1) scenes. This mine has presented a historical of instability and surface monitoring measurements over sectors of the mine (pit walls) have been done based on ground based radar. Two complementary approaches were used: the standard DInSAR configuration, as an early warning of the slope instability conditions, and the DInSAR timeseries analysis. In order to decrease the topographic phase error a high resolution DEM was generated based on a stereo GeoEye-1 pair. Despite the fact that a DinSAR contains atmospheric and topographic phase artifacts and noise, it was possible to detect deformation in some interferometric pairs, covering pit benches, road ramps and waste piles. The timeseries analysis was performed using the 31 interferometric pairs, which were selected based on the highest mean coherence of a stack of 107 interferograms, presenting less phase unwrapping errors. The time-series deformation was retrieved by the Least-Squares (LS) solution using an extension of the Singular Value Decomposition (SVD), with a set of additional weighted constrain on the acceleration deformation. The atmospheric phase artifacts were filtered in the space-time domain and the DEM height errors were estimated based on the normal baseline diversity. The DInSAR time-series investigation showed good results for monitoring surface displacement in the N5W mine located in a tropical rainforest environment, providing very useful information about the ground movement for alarm, planning and risk assessment.

  18. FDTD calculation of whole-body average SAR in adult and child models for frequencies from 30 MHz to 3 GHz

    International Nuclear Information System (INIS)

    Wang Jianqing; Fujiwara, Osamu; Kodera, Sachiko; Watanabe, Soichi

    2006-01-01

    Due to the difficulty of the specific absorption rate (SAR) measurement in an actual human body for electromagnetic radio-frequency (RF) exposure, in various compliance assessment procedures the incident electric field or power density is being used as a reference level, which should never yield a larger whole-body average SAR than the basic safety limit. The relationship between the reference level and the whole-body average SAR, however, was established mainly based on numerical calculations for highly simplified human modelling dozens of years ago. Its validity is being questioned by the latest calculation results. In verifying the validity of the reference level with respect to the basic SAR limit for RF exposure, it is essential to have a high accuracy of human modelling and numerical code. In this study, we made a detailed error analysis in the whole-body average SAR calculation for the finite-difference time-domain (FDTD) method in conjunction with the perfectly matched layer (PML) absorbing boundaries. We derived a basic rule for the PML employment based on a dielectric sphere and the Mie theory solution. We then attempted to clarify to what extent the whole-body average SAR may reach using an anatomically based Japanese adult model and a scaled child model. The results show that the whole-body average SAR under the ICNIRP reference level exceeds the basic safety limit nearly 30% for the child model both in the resonance frequency and 2 GHz band

  19. FDTD calculation of whole-body average SAR in adult and child models for frequencies from 30 MHz to 3 GHz

    Energy Technology Data Exchange (ETDEWEB)

    Wang Jianqing [Graduate School of Engineering, Nagoya Institute of Technology, Gokiso-cho, Showa-ku, Nagoya 466-8555 (Japan); Fujiwara, Osamu [Graduate School of Engineering, Nagoya Institute of Technology, Gokiso-cho, Showa-ku, Nagoya 466-8555 (Japan); Kodera, Sachiko [Graduate School of Engineering, Nagoya Institute of Technology, Gokiso-cho, Showa-ku, Nagoya 466-8555 (Japan); Watanabe, Soichi [National Institute of Information and Communications Technology, Nukui-kitamachi, Koganei, Tokyo 184-8795 (Japan)

    2006-09-07

    Due to the difficulty of the specific absorption rate (SAR) measurement in an actual human body for electromagnetic radio-frequency (RF) exposure, in various compliance assessment procedures the incident electric field or power density is being used as a reference level, which should never yield a larger whole-body average SAR than the basic safety limit. The relationship between the reference level and the whole-body average SAR, however, was established mainly based on numerical calculations for highly simplified human modelling dozens of years ago. Its validity is being questioned by the latest calculation results. In verifying the validity of the reference level with respect to the basic SAR limit for RF exposure, it is essential to have a high accuracy of human modelling and numerical code. In this study, we made a detailed error analysis in the whole-body average SAR calculation for the finite-difference time-domain (FDTD) method in conjunction with the perfectly matched layer (PML) absorbing boundaries. We derived a basic rule for the PML employment based on a dielectric sphere and the Mie theory solution. We then attempted to clarify to what extent the whole-body average SAR may reach using an anatomically based Japanese adult model and a scaled child model. The results show that the whole-body average SAR under the ICNIRP reference level exceeds the basic safety limit nearly 30% for the child model both in the resonance frequency and 2 GHz band.

  20. Laboratory safe detection of nucleocapsid protein of Rift Valley fever virus in human and animal specimens by a sandwich ELISA.

    Science.gov (United States)

    Jansen van Vuren, P; Paweska, J T

    2009-04-01

    A safe laboratory procedure, based on a sandwich ELISA (sAg-ELISA), was developed and evaluated for the detection of nucleocapsid protein (NP) of Rift Valley fever virus (RVFV) in specimens inactivated at 56 degrees C for 1h in the presence of 0.5% Tween-20 (v/v) before testing. Polyclonal capture and detection immune sera were generated respectively in sheep and rabbits immunized with recombinant NP antigen. The assay was highly repeatable and specific; it detected strains of RVFV from the entire distributional range of the disease, isolated over a period of 53 years; no cross-reactivity with genetically related African phleboviruses or other members of the family Bunyaviridae was observed. In specimens spiked with RVFV, including human and animal sera, homogenates of liver and spleen tissues of domestic ruminants, and Anopheles mosquito homogenates, the sAg-ELISA detection limit ranged from log(10)10(2.2) to 10(3.2) TCID(50)/reaction volume. The ELISA detected NP antigen in spiked bovine and sheep liver homogenates up to at least 8 days of incubation at 37 degrees C whereas infectious virus could not be detected at 48h incubation in these adverse conditions. Compared to virus isolation from sera from RVF patients and sheep infected experimentally, the ELISA had 67.7% and 70% sensitivity, and 97.97% and 100% specificity, respectively. The assay was 100% accurate when testing tissues of various organs from mice infected experimentally and buffalo foetuses infected naturally. The assay was able to detect NP antigen in infective culture supernatants 16-24h before cytopathic effects were observed microscopically and as early as 8h after inoculation with 10(5.8) TCID(50)/ml of RVFV. This ability renders the assay for rapid identification of the virus when its primary isolation is attempted in vitro. As a highly specific, safe and simple assay format, the sAg-ELISA represents a valuable diagnostic tool for use in less equipped laboratories in Africa, and for routine

  1. Mutations within the nuclear localization signal of the porcine reproductive and respiratory syndrome virus nucleocapsid protein attenuate virus replication

    International Nuclear Information System (INIS)

    Lee, Changhee; Hodgins, Douglas; Calvert, Jay G.; Welch, Siao-Kun W.; Jolie, Rika; Yoo, Dongwan

    2006-01-01

    Porcine reproductive and respiratory syndrome virus (PRRSV) is an RNA virus replicating in the cytoplasm, but the nucleocapsid (N) protein is specifically localized to the nucleus and nucleolus in virus-infected cells. A 'pat7' motif of 41-PGKK(N/S)KK has previously been identified in the N protein as the functional nuclear localization signal (NLS); however, the biological consequences of N protein nuclear localization are unknown. In the present study, the role of N protein nuclear localization during infection was investigated in pigs using an NLS-null mutant virus. When two lysines at 43 and 44 at the NLS locus were substituted to glycines, the modified NLS with 41-PGGGNKK restricted the N protein to the cytoplasm. This NLS-null mutation was introduced into a full-length infectious cDNA clone of PRRSV. Upon transfection of cells, the NLS-null full-length clone induced cytopathic effects and produced infectious progeny. The NLS-null virus grew to a titer 100-fold lower than that of wild-type virus. To examine the response to NLS-null PRRSV in the natural host, three groups of pigs, consisting of seven animals per group, were intranasally inoculated with wild-type, placebo, or NLS-null virus, and the animals were maintained for 4 weeks. The NLS-null-infected pigs had a significantly shorter mean duration of viremia than wild-type-infected pigs but developed significantly higher titers of neutralizing antibodies. Mutations occurred at the NLS locus in one pig during viremia, and four types of mutations were identified: 41-PGRGNKK, 41-PGGRNKK, and 41-PGRRNKK, and 41-PGKKSKK. Both wild-type and NLS-null viruses persisted in the tonsils for at least 4 weeks, and the NLS-null virus persisting in the tonsils was found to be mutated to either 41-PGRGNKK or 41-PGGRNKK in all pigs. No other mutation was found in the N gene. All types of reversions which occurred during viremia and persistence were able to translocate the mutated N proteins to the nucleus, indicating a

  2. Satellite on-board real-time SAR processor prototype

    Science.gov (United States)

    Bergeron, Alain; Doucet, Michel; Harnisch, Bernd; Suess, Martin; Marchese, Linda; Bourqui, Pascal; Desnoyers, Nicholas; Legros, Mathieu; Guillot, Ludovic; Mercier, Luc; Châteauneuf, François

    2017-11-01

    A Compact Real-Time Optronic SAR Processor has been successfully developed and tested up to a Technology Readiness Level of 4 (TRL4), the breadboard validation in a laboratory environment. SAR, or Synthetic Aperture Radar, is an active system allowing day and night imaging independent of the cloud coverage of the planet. The SAR raw data is a set of complex data for range and azimuth, which cannot be compressed. Specifically, for planetary missions and unmanned aerial vehicle (UAV) systems with limited communication data rates this is a clear disadvantage. SAR images are typically processed electronically applying dedicated Fourier transformations. This, however, can also be performed optically in real-time. Originally the first SAR images were optically processed. The optical Fourier processor architecture provides inherent parallel computing capabilities allowing real-time SAR data processing and thus the ability for compression and strongly reduced communication bandwidth requirements for the satellite. SAR signal return data are in general complex data. Both amplitude and phase must be combined optically in the SAR processor for each range and azimuth pixel. Amplitude and phase are generated by dedicated spatial light modulators and superimposed by an optical relay set-up. The spatial light modulators display the full complex raw data information over a two-dimensional format, one for the azimuth and one for the range. Since the entire signal history is displayed at once, the processor operates in parallel yielding real-time performances, i.e. without resulting bottleneck. Processing of both azimuth and range information is performed in a single pass. This paper focuses on the onboard capabilities of the compact optical SAR processor prototype that allows in-orbit processing of SAR images. Examples of processed ENVISAT ASAR images are presented. Various SAR processor parameters such as processing capabilities, image quality (point target analysis), weight and

  3. Change detection in a time series of polarimetric SAR images

    DEFF Research Database (Denmark)

    Skriver, Henning; Nielsen, Allan Aasbjerg; Conradsen, Knut

    A test statistic for the equality of two or several variance-covariance matrices following the real (as opposed to the complex) Wishart distribution with an associated probability of finding a smaller value of the test statistic is described in the literature [1]. In 2003 we introduced a test...... statistic for the equality of two variance-covariance matrices following the complex Wishart distribution with an associated probability measure [2]. In that paper we also demonstrated the use of the test statistic to change detection over time in both fully polarimetric and azimuthal symmetric SAR data...... positives (postulating a change when there actually is none) and/or false negatives (missing an actual change). Therefore we need to test for equality for all time points simultaneously. In this paper we demonstrate a new test statistic for the equality of several variance-covariance matrices from the real...

  4. FPGA Implementation of a SAR Two-dimensional Autofocus Approach

    Directory of Open Access Journals (Sweden)

    Guo Jiangzhe

    2016-08-01

    Full Text Available For real-time autofocus of defocused images produced by Synthetic Aperture Radar (SAR, the twodimensional autofocus approach proposed in this study is used to correct the residual range cell migration and compensate for the phase error. Next, a block-wise Phase Gradient Autofocus (PGA is used to correct the space-variant phase error. The Field-Programmable Gate Array (FPGA design procedures, resource utilization, processing speed, accuracy, and autofocus are discussed in detail. The system is able to autofocus an 8K × 8K complex image with single precision within 5.7 s when the FPGA works at 200 MHz. The processing of the measured data verifies the effectiveness and real-time capability of the proposed method.

  5. Pasture Monitoring Using SAR with COSMO-SkyMed, ENVISAT ASAR, and ALOS PALSAR in Otway, Australia

    Directory of Open Access Journals (Sweden)

    Xiaojing Li

    2013-07-01

    . The L-band SAR is the less accurate one for grass biomass measurement due to stronger penetration.

  6. Spatiotemporal Characterization of Land Subsidence and Uplift (2009–2010 over Wuhan in Central China Revealed by TerraSAR-X InSAR Analysis

    Directory of Open Access Journals (Sweden)

    Lin Bai

    2016-04-01

    Full Text Available The effects of ground deformation pose a significant geo-hazard to the environment and infrastructure in Wuhan, the most populous city in Central China, in the eastern Jianghan Plain at the intersection of the Yangtze and Han rivers. Prior to this study, however, rates and patterns of region-wide ground deformation in Wuhan were little known. Here we employ multi-temporal SAR interferometry to detect and characterize spatiotemporal variations of ground deformation in major metropolitan areas in Wuhan. A total of twelve TerraSAR-X images acquired during 2009–2010 are used in the InSAR time series analysis. InSAR-derived results are validated by levelling survey measurements and reveal a distinct subsidence pattern within six zones in major commercial and industrial areas, with a maximum subsidence rate up to −67.3 mm/year. A comparison analysis between subsiding patterns and urban developments as well as geological conditions suggests that land subsidence in Wuhan is mainly attributed to anthropogenic activities, natural compaction of soft soil, and karst dissolution of subsurface carbonate rocks. However, anthropogenic activities related to intensive municipal construction and industrial production have more significant impacts on the measured subsidence than natural factors. Moreover, remarkable signals of secular land uplift are found along both banks of the Yangtze River, especially along the southern bank, with deformation rates ranging mostly from +5 mm/year to +17.5 mm/year. A strong temporal correlation is highlighted between the detected displacement evolutions and the water level records of the Yangtze River, inferring that this previously unknown deformation phenomenon is likely related to seasonal fluctuations in water levels of the Yangtze River.

  7. AN ASSESSMENT OF SPACEBORNE NEAR-NADIR INTERFEROMETRIC SAR PERFORMANCE OVER INLAND WATERS WITH REAL

    Directory of Open Access Journals (Sweden)

    H. Tan

    2018-04-01

    Full Text Available Elevation measurements of the continental water surface have been poorly collected with in situ measurements or occasionally with conventional altimeters with low accuracy. Techniques using InSAR at near-nadir angles to measure the inland water elevation with large swath and with high accuracy have been proposed, for instance, the WSOA on Jason 2 and the KaRIn on SWOT. However, the WSOA was abandoned unfortunately and the SWOT is planned to be launched in 2021. In this paper, we show real acquisitions of the first spaceborne InSAR of such kind, the Interferometric Imaging Radar Altimeter (InIRA, which has been working on Tiangong II spacecraft since 2016. We used the 90-m SRTM DEM as a reference to estimate the phase offset, and then an empirical calibration model was used to correct the baseline errors.

  8. An Assessment of Spaceborne Near-Nadir Interferometric SAR Performance Over Inland Waters with Real

    Science.gov (United States)

    Tan, H.; Li, S. Y.; Liu, Z. W.

    2018-04-01

    Elevation measurements of the continental water surface have been poorly collected with in situ measurements or occasionally with conventional altimeters with low accuracy. Techniques using InSAR at near-nadir angles to measure the inland water elevation with large swath and with high accuracy have been proposed, for instance, the WSOA on Jason 2 and the KaRIn on SWOT. However, the WSOA was abandoned unfortunately and the SWOT is planned to be launched in 2021. In this paper, we show real acquisitions of the first spaceborne InSAR of such kind, the Interferometric Imaging Radar Altimeter (InIRA), which has been working on Tiangong II spacecraft since 2016. We used the 90-m SRTM DEM as a reference to estimate the phase offset, and then an empirical calibration model was used to correct the baseline errors.

  9. The 2006-2012 deformation at Sakurajima stratovolcano (Japan) detected via spaceborne multisensor SAR Interferometry

    Science.gov (United States)

    Pepe, Susi; Trippanera, Daniele; Casu, Francesco; Tizzani, Pietro; Nobile, Adriano; Aoki, Yosuke; Zoffoli, Simona; Acocella, Valerio; Sansosti, Eugenio

    2013-04-01

    We analyze the evolution of the ground deformation at Sakurajima active stratovolcano located in the Aira caldera (Kagoshima prefecture Japan). This caldera, extending over more than 20 km, has been formed as a consequence of a huge eruption, occurred 22,000 years ago, that caused a magma chamber collapse. The Sakurajima volcano is an andesitic cone formed by more recent activity within the caldera, beginning about 13,000 years ago. Its first historical recorded eruption occurred in 963 AD. Most eruptions are Strombolian and Vulcanian and affect only the summit area. The larger explosive (plinian) eruptions occurred in 1471-1476, 1779-1782 and 1914, each producing 1 - 2 km3 of lava and pyroclastic materials. Explosive eruptions of Vulcanian type, with ash emissions, have occurred intermittently from 1955 to 2002. From 2009 to December 2012, a strong and continuous period of volcanic activity has been recorded mainly at the Showa Crater producing plumes that reached altitudes of 1.8-3.5 km. In order to analyze the active deformation processes of the volcano complex and its surrounding areas, we performed SAR Interferometry (InSAR) techniques by using COSMOSkyMed (X-band) and ALOS (L-band) data. The joint data analysis allowed us to increase the spatial coverage of InSAR measurements., we processed 19 descending and 25 ascending orbit SAR images acquired by ALOS satellite from 2008 to 2011 and 2006 to 2011, respectively; we computed 57 descending and 71 ascending interferograms which were subsequently inverted via SBAS-InSAR algorithm to obtain mean velocity maps and deformation time series. The X-band dataset consists of 20 images acquired only on descending orbits between 2011 and 2012; from this dataset we computed 44 interferograms. The preliminary analysis of the mean deformation velocity reveals the presence of a consistent uplift signal in the North region of the Sakurajima Island that extends also to the North sector of Kagoshima bay. The corresponding

  10. A new implementation of full resolution SBAS-DInSAR processing chain for the effective monitoring of structures and infrastructures

    Science.gov (United States)

    Bonano, Manuela; Buonanno, Sabatino; Ojha, Chandrakanta; Berardino, Paolo; Lanari, Riccardo; Zeni, Giovanni; Manunta, Michele

    2017-04-01

    memory. Moreover, in some processing steps very heavy from the computational point of view, the Graphical Processing Units (GPU) are exploited for the processing of blocks working on a pixel-by-pixel basis, requiring strong modifications on some key parts of the sequential full resolution SBAS-DInSAR processing chain. GPU processing is implemented by efficiently exploiting parallel processing architectures (as CUDA) for increasing the computing performances, in terms of optimization of the available GPU memory, as well as reduction of the Input/Output operations on the GPU and of the whole processing time for specific blocks w.r.t. the corresponding sequential implementation, particularly critical in presence of huge DInSAR datasets. Moreover, to efficiently handle the massive amount of DInSAR measurements provided by the new generation SAR constellations (CSK and Sentinel-1), we perform a proper re-design strategy aimed at the robust assimilation of the full resolution SBAS-DInSAR results into the web-based Geonode platform of the Spatial Data Infrastructure, thus allowing the efficient management, analysis and integration of the interferometric results with different data sources.

  11. Multi-temporal InSAR Datastacks for Surface Deformation Monitoring: a Review

    Science.gov (United States)

    Ferretti, A.; Novali, F.; Prati, C.; Rocca, F.

    2009-04-01

    In the last decade extensive processing of thousands of satellite radar scenes acquired by different sensors (e.g. ERS-1/2, ENVISAT and RADARSAT) has demonstrated how multi-temporal data-sets can be successfully exploited for surface deformation monitoring, by identifying objects on the terrain that have a stable, point-like behaviour. These objects, referred to as Permanent or Persistent Scatterers (PS), can be geo-coded and monitored for movement very accurately, acting as a "natural" geodetic network, integrating successfully continuous GPS data. After a brief analysis of both advantages and drawbacks of InSAR datastacks, the paper presents examples of applications of PS measurements for detecting and monitoring active faults, aquifers and oil/gas reservoirs, using experience in Europe, North America and Japan, and concludes with a discussion on future directions for PSInSAR analysis. Special attention is paid to the possibility of creating deformation maps over wide areas using historical archives of data already available. This second part of the paper will briefly discuss the technical features of the new radar sensors recently launched (namely: TerraSAR-X, RADARSAT-2, and CosmoSkyMed) and their impact on space geodesy, highlighting the importance of data continuity and standardized acquisition policies for almost all InSAR and PSInSAR applications. Finally, recent advances in the algorithms applied in PS analysis, such as detection of "temporary PS", PS characterization and exploitation of distributed scatterers, will be briefly discussed based on the processing of real data.

  12. A general rough-surface inversion algorithm: Theory and application to SAR data

    Science.gov (United States)

    Moghaddam, M.

    1993-01-01

    Rough-surface inversion has significant applications in interpretation of SAR data obtained over bare soil surfaces and agricultural lands. Due to the sparsity of data and the large pixel size in SAR applications, it is not feasible to carry out inversions based on numerical scattering models. The alternative is to use parameter estimation techniques based on approximate analytical or empirical models. Hence, there are two issues to be addressed, namely, what model to choose and what estimation algorithm to apply. Here, a small perturbation model (SPM) is used to express the backscattering coefficients of the rough surface in terms of three surface parameters. The algorithm used to estimate these parameters is based on a nonlinear least-squares criterion. The least-squares optimization methods are widely used in estimation theory, but the distinguishing factor for SAR applications is incorporating the stochastic nature of both the unknown parameters and the data into formulation, which will be discussed in detail. The algorithm is tested with synthetic data, and several Newton-type least-squares minimization methods are discussed to compare their convergence characteristics. Finally, the algorithm is applied to multifrequency polarimetric SAR data obtained over some bare soil and agricultural fields. Results will be shown and compared to ground-truth measurements obtained from these areas. The strength of this general approach to inversion of SAR data is that it can be easily modified for use with any scattering model without changing any of the inversion steps. Note also that, for the same reason it is not limited to inversion of rough surfaces, and can be applied to any parameterized scattering process.

  13. Bioinformatics analysis of SARS coronavirus genome polymorphism

    Directory of Open Access Journals (Sweden)

    Pavlović-Lažetić Gordana M

    2004-05-01

    Full Text Available Abstract Background We have compared 38 isolates of the SARS-CoV complete genome. The main goal was twofold: first, to analyze and compare nucleotide sequences and to identify positions of single nucleotide polymorphism (SNP, insertions and deletions, and second, to group them according to sequence similarity, eventually pointing to phylogeny of SARS-CoV isolates. The comparison is based on genome polymorphism such as insertions or deletions and the number and positions of SNPs. Results The nucleotide structure of all 38 isolates is presented. Based on insertions and deletions and dissimilarity due to SNPs, the dataset of all the isolates has been qualitatively classified into three groups each having their own subgroups. These are the A-group with "regular" isolates (no insertions / deletions except for 5' and 3' ends, the B-group of isolates with "long insertions", and the C-group of isolates with "many individual" insertions and deletions. The isolate with the smallest average number of SNPs, compared to other isolates, has been identified (TWH. The density distribution of SNPs, insertions and deletions for each group or subgroup, as well as cumulatively for all the isolates is also presented, along with the gene map for TWH. Since individual SNPs may have occurred at random, positions corresponding to multiple SNPs (occurring in two or more isolates are identified and presented. This result revises some previous results of a similar type. Amino acid changes caused by multiple SNPs are also identified (for the annotated sequences, as well as presupposed amino acid changes for non-annotated ones. Exact SNP positions for the isolates in each group or subgroup are presented. Finally, a phylogenetic tree for the SARS-CoV isolates has been produced using the CLUSTALW program, showing high compatibility with former qualitative classification. Conclusions The comparative study of SARS-CoV isolates provides essential information for genome

  14. Two dimensional estimates from ocean SAR images

    Directory of Open Access Journals (Sweden)

    J. M. Le Caillec

    1996-01-01

    Full Text Available Synthetic Aperture Radar (SAR images of the ocean yield a lot of information on the sea-state surface providing that the mapping process between the surface and the image is clearly defined. However it is well known that SAR images exhibit non-gaussian statistics and that the motion of the scatterers on the surface, while the image is being formed, may yield to nonlinearities. The detection and quantification of these nonlinearities are made possible by using Higher Order Spectra (HOS methods and more specifically, bispectrum estimation. The development of the latter method allowed us to find phase relations between different parts of the image and to recognise their level of coupling, i.e. if and how waves of different wavelengths interacted nonlinearly. This information is quite important as the usual models assume strong nonlinearities when the waves are propagating in the azimuthal direction (i.e. along the satellite track and almost no nonlinearities when propagating in the range direction. In this paper, the mapping of the ocean surface to the SAR image is reinterpreted and a specific model (i.e. a Second Order Volterra Model is introduced. The nonlinearities are thus explained as either produced by a nonlinear system or due to waves propagating into selected directions (azimuth or range and interacting during image formation. It is shown that quadratic nonlinearities occur for waves propagating near the range direction while for those travelling in the azimuthal direction the nonlinearities, when present, are mostly due to wave interactions but are almost completely removed by the filtering effect coming from the surface motion itself (azimuth cut-off. An inherent quadratic interaction filtering (azimuth high pass filter is also present. But some other effects, apparently nonlinear, are not detected with the methods described here, meaning that either the usual relation developed for the Ocean-to-SAR transform is somewhat incomplete

  15. Cross-calibration of interferometric SAR data

    DEFF Research Database (Denmark)

    Dall, Jørgen

    2003-01-01

    Generation of digital elevation models from interferometric synthetic aperture radar (SAR) data is a well established technique. Achieving a high geometric fidelity calls for a calibration accounting for inaccurate navigation data and system parameters as well as system imperfections. Fully...... automated calibration techniques are preferable, especially for operational mapping. The author presents one such technique, called cross-calibration. Though developed for single-pass interferometry, it may be applicable to multi-pass interferometry, too. Cross-calibration requires stability during mapping...... ground control point is often needed. The paper presents the principles and mathematics of the cross-calibration technique and illustrates its successful application to EMISAR data....

  16. Detection of land degradation with polarimetric SAR

    Science.gov (United States)

    Ray, Terrill W.; Farr, Tom G.; Van Zyl, Jakob J.

    1992-01-01

    Multispectral radar polarimeter data were collected over the Manix Basin Area of the Mojave desert using an airborne SAR. An analysis of the data reveals unusual polarization responses which are attributed to the formation of wind ripples on the surfaces of fields that have been abandoned for more than 5 years. This hypothesis has been confirmed through field observations, and a second-order perturbation model is shown to effectively model the polarization responses. The results demonstrate the usefulness of remote sensing techniques for the study of land degradation at synoptic scales.

  17. Cloaked similarity between HIV-1 and SARS-CoV suggests an anti-SARS strategy

    Directory of Open Access Journals (Sweden)

    Kliger Yossef

    2003-09-01

    Full Text Available Abstract Background Severe acute respiratory syndrome (SARS is a febrile respiratory illness. The disease has been etiologically linked to a novel coronavirus that has been named the SARS-associated coronavirus (SARS-CoV, whose genome was recently sequenced. Since it is a member of the Coronaviridae, its spike protein (S2 is believed to play a central role in viral entry by facilitating fusion between the viral and host cell membranes. The protein responsible for viral-induced membrane fusion of HIV-1 (gp41 differs in length, and has no sequence homology with S2. Results Sequence analysis reveals that the two viral proteins share the sequence motifs that construct their active conformation. These include (1 an N-terminal leucine/isoleucine zipper-like sequence, and (2 a C-terminal heptad repeat located upstream of (3 an aromatic residue-rich region juxtaposed to the (4 transmembrane segment. Conclusions This study points to a similar mode of action for the two viral proteins, suggesting that anti-viral strategy that targets the viral-induced membrane fusion step can be adopted from HIV-1 to SARS-CoV. Recently the FDA approved Enfuvirtide, a synthetic peptide corresponding to the C-terminal heptad repeat of HIV-1 gp41, as an anti-AIDS agent. Enfuvirtide and C34, another anti HIV-1 peptide, exert their inhibitory activity by binding to a leucine/isoleucine zipper-like sequence in gp41, thus inhibiting a conformational change of gp41 required for its activation. We suggest that peptides corresponding to the C-terminal heptad repeat of the S2 protein may serve as inhibitors for SARS-CoV entry.

  18. Automated inundation monitoring using TerraSAR-X multitemporal imagery

    Science.gov (United States)

    Gebhardt, S.; Huth, J.; Wehrmann, T.; Schettler, I.; Künzer, C.; Schmidt, M.; Dech, S.

    2009-04-01

    The Mekong Delta in Vietnam offers natural resources for several million inhabitants. However, a strong population increase, changing climatic conditions and regulatory measures at the upper reaches of the Mekong lead to severe changes in the Delta. Extreme flood events occur more frequently, drinking water availability is increasingly limited, soils show signs of salinization or acidification, species and complete habitats diminish. During the Monsoon season the river regularly overflows its banks in the lower Mekong area, usually with beneficial effects. However, extreme flood events occur more frequently causing extensive damage, on the average once every 6 to 10 years river flood levels exceed the critical beneficial level X-band SAR data are well suited for deriving inundated surface areas. The TerraSAR-X sensor with its different scanning modi allows for the derivation of spatial and temporal high resolved inundation masks. The paper presents an automated procedure for deriving inundated areas from TerraSAR-X Scansar and Stripmap image data. Within the framework of the German-Vietnamese WISDOM project, focussing the Mekong Delta region in Vietnam, images have been acquired covering the flood season from June 2008 to November 2008. Based on these images a time series of the so called watermask showing inundated areas have been derived. The product is required as intermediate to (i) calibrate 2d inundation model scenarios, (ii) estimate the extent of affected areas, and (iii) analyze the scope of prior crisis. The image processing approach is based on the assumption that water surfaces are forward scattering the radar signal resulting in low backscatter signals to the sensor. It uses multiple grey level thresholds and image morphological operations. The approach is robust in terms of automation, accuracy, robustness, and processing time. The resulting watermasks show the seasonal flooding pattern with inundations starting in July, having their peak at the end

  19. Mapping mountain meadow with high resolution and polarimetric SAR data

    International Nuclear Information System (INIS)

    Tian, Bangsen; Li, Zhen; Xu, Juan; Fu, Sitao; Liu, Jiuli

    2014-01-01

    This paper presents a method to map the large grassland in the eastern margin of the Tibetan Plateau with the high resolution polarimetric SAR (PolSAR) imagery. When PolSAR imagery is used for land cover classification, the brightness of a SAR image is affected by topography due to varying projection between ground and image coordinates. The objective of this paper is twofold: (1) we first extend the theory of SAR terrain correction to the polarimetric case, to utilize the entire available polarimetric signature, where correction is performed explicitly based on a matrix format like covariance matrix. (2) Next, the orthoectified PolSAR is applied to classify mountain meadow and investigate the potential of PolSAR in mapping grassland. In this paper, the gamma naught radiometric correction estimates the local illuminated area at each grid point in the radar geometry. Then, each element of the coherency matrix is divided by the local area to produce a polarimetric product. Secondly, the impact of radiometric correction upon classification accuracy is investigated. A supervised classification is performed on the orthorectified Radarsat-2 PolSAR to map the spatial distribution of meadow and evaluate monitoring capabilities of mountain meadow

  20. Molecular mechanisms of severe acute respiratory syndrome (SARS

    Directory of Open Access Journals (Sweden)

    Zabel Peter

    2005-01-01

    Full Text Available Abstract Severe acute respiratory syndrome (SARS is a new infectious disease caused by a novel coronavirus that leads to deleterious pulmonary pathological features. Due to its high morbidity and mortality and widespread occurrence, SARS has evolved as an important respiratory disease which may be encountered everywhere in the world. The virus was identified as the causative agent of SARS due to the efforts of a WHO-led laboratory network. The potential mutability of the SARS-CoV genome may lead to new SARS outbreaks and several regions of the viral genomes open reading frames have been identified which may contribute to the severe virulence of the virus. With regard to the pathogenesis of SARS, several mechanisms involving both direct effects on target cells and indirect effects via the immune system may exist. Vaccination would offer the most attractive approach to prevent new epidemics of SARS, but the development of vaccines is difficult due to missing data on the role of immune system-virus interactions and the potential mutability of the virus. Even in a situation of no new infections, SARS remains a major health hazard, as new epidemics may arise. Therefore, further experimental and clinical research is required to control the disease.

  1. Synthetic aperture design for increased SAR image rate

    Science.gov (United States)

    Bielek, Timothy P [Albuquerque, NM; Thompson, Douglas G [Albuqerque, NM; Walker, Bruce C [Albuquerque, NM

    2009-03-03

    High resolution SAR images of a target scene at near video rates can be produced by using overlapped, but nevertheless, full-size synthetic apertures. The SAR images, which respectively correspond to the apertures, can be analyzed in sequence to permit detection of movement in the target scene.

  2. Training Convolutional Neural Networks for Translational Invariance on SAR ATR

    DEFF Research Database (Denmark)

    Malmgren-Hansen, David; Engholm, Rasmus; Østergaard Pedersen, Morten

    2016-01-01

    In this paper we present a comparison of the robustness of Convolutional Neural Networks (CNN) to other classifiers in the presence of uncertainty of the objects localization in SAR image. We present a framework for simulating simple SAR images, translating the object of interest systematically...

  3. Multi-look polarimetric SAR image filtering using simulated annealing

    DEFF Research Database (Denmark)

    Schou, Jesper

    2000-01-01

    Based on a previously published algorithm capable of estimating the radar cross-section in synthetic aperture radar (SAR) intensity images, a new filter is presented utilizing multi-look polarimetric SAR images. The underlying mean covariance matrix is estimated from the observed sample covariance...

  4. The Danish polarimetric SAR for remote sensing applications

    DEFF Research Database (Denmark)

    Christensen, Erik Lintz; Madsen, Søren Nørvang; Dall, Jørgen

    1994-01-01

    Presents the Danish polarimetric SAR system, EMISAR, and the approach taken in the system design to achieve a reliable high performance system. The design and implementation of the antenna system as well as the analog and digital hardware are discussed. The SAR utilises a dual polarised microstri...

  5. Demonstrator for Automatic Target Classification in SAR Imagery

    NARCIS (Netherlands)

    Wit, J.J.M. de; Broek, A.C. van den; Dekker, R.J.

    2006-01-01

    Due to the increasing use of unmanned aerial vehicles (UAV) for reconnaissance, surveillance, and target acquisition applications, the interest in synthetic aperture radar (SAR) systems is growing. In order to facilitate the processing of the enormous amount of SAR data on the ground, automatic

  6. An Adaptive Ship Detection Scheme for Spaceborne SAR Imagery

    Directory of Open Access Journals (Sweden)

    Xiangguang Leng

    2016-08-01

    Full Text Available With the rapid development of spaceborne synthetic aperture radar (SAR and the increasing need of ship detection, research on adaptive ship detection in spaceborne SAR imagery is of great importance. Focusing on practical problems of ship detection, this paper presents a highly adaptive ship detection scheme for spaceborne SAR imagery. It is able to process a wide range of sensors, imaging modes and resolutions. Two main stages are identified in this paper, namely: ship candidate detection and ship discrimination. Firstly, this paper proposes an adaptive land masking method using ship size and pixel size. Secondly, taking into account the imaging mode, incidence angle, and polarization channel of SAR imagery, it implements adaptive ship candidate detection in spaceborne SAR imagery by applying different strategies to different resolution SAR images. Finally, aiming at different types of typical false alarms, this paper proposes a comprehensive ship discrimination method in spaceborne SAR imagery based on confidence level and complexity analysis. Experimental results based on RADARSAT-1, RADARSAT-2, TerraSAR-X, RS-1, and RS-3 images demonstrate that the adaptive scheme proposed in this paper is able to detect ship targets in a fast, efficient and robust way.

  7. Project PHARUS: Towards a polarimetric C-band airborne SAR

    NARCIS (Netherlands)

    Hoogeboom, P.; Koomen, P.J.; Otten, M.P.G.; Pouwels, H.; Snoeij, P.

    1989-01-01

    A few years ago three institutes in the Netherlands developed a plan to design and build a polarimetric C-band aircraft SAR system of a novel design, called PHARUS (PHased Array Universal SAR), meant as a replacement for our current digital SLAR system. These institutes are the Physics and

  8. Crop Classification Using Short-Revisit Multitemporal SAR Data

    DEFF Research Database (Denmark)

    Skriver, Henning; Mattia, Francesco; Satalino, Giuseppe

    2011-01-01

    Classification of crops and other land cover types is an important application of both optical/infrared and SAR satellite data. It is already an import application of present satellite systems, as it will be for planned missions, such as the Sentinels. An airborne SAR data set with a short revisi...

  9. Protecting healthcare workers in an acute care environment during epidemics: lessons learned from the SARS outbreak

    Directory of Open Access Journals (Sweden)

    John Casken

    2011-01-01

    Full Text Available During the 2002-2003 the SARS outbreak resulted in 8,450 illnesses and 812 deaths. Out of these documented cases 1706 were among healthcare workers (HCWsThe purpose of this paper is to focus on and examine the details of infection control (IC measures and which of these measures appear to be the most effective in stopping disease spread. Historically, HCWs have had poor compliance with the use of IC measures prior to the SARS outbreak. A number of lessons were learned from the SARS epidemic that should be incorporated into healthcare institutions policies and procedures. They include the following: an emphasis on the correct and immediate use of IC measures; an increased focus on HCWs recognizing early perceived threats; healthcare institutions should mandate routine in-house education with periodic updates on IC measures; administrators need to acknowledge and encourage role models among staff; engineeringcontrols should be put in place to protect staff from pathogens; and finally, there should be clear and constant communication between administration and staff.

  10. From Regional Hazard Assessment to Nuclear-Test-Ban Treaty Support - InSAR Ground Motion Services

    Science.gov (United States)

    Lege, T.; Kalia, A.; Gruenberg, I.; Frei, M.

    2016-12-01

    There are numerous scientific applications of InSAR methods in tectonics, earthquake analysis and other geologic and geophysical fields. Ground motion on local and regional scale measured and monitored via the application of the InSAR techniques provide scientists and engineers with plenty of new insights and further understanding of subsurface processes. However, the operational use of InSAR is not yet very widespread. To foster the operational utilization of the Copernicus Sentinel Satellites in the day-to-day business of federal, state and municipal work and planning BGR (Federal Institute for Geosciences and Natural Resources) initiated workshops with potential user groups. Through extensive reconcilement of interests and demands with scientific, technical, economic and governmental stakeholders (e.g. Ministries, Mining Authorities, Geological Surveys, Geodetic Surveys and Environmental Agencies on federal and state level, SMEs, German Aerospace Center) BGR developed the concept of the InSAR based German National Ground Motion Service. One important backbone for the nationwide ground motion service is the so-called Persistent Scatterer Interferometry Wide Area Product (WAP) approach developed with grants of European research funds. The presentation shows the implementation of the ground motion service and examples for product developments for operational supervision of mining, water resources management and spatial planning. Furthermore the contributions of Copernicus Sentinel 1 radar data in the context of CTBT are discussed. The DInSAR processing of Sentinel 1 IW (Interferometric Wide Swath) SAR acquisitions from January 1st and 13th Jan. 2016 allow for the first time a near real time ground motion measurement of the North Korean nuclear test site. The measured ground displacements show a strong spatio-temporal correlation to the calculated epicenter measured by teleseismic stations. We are convinced this way another space technique will soon contribute even

  11. On the Design of Radar Corner Reflectors for Deformation Monitoring in Multi-Frequency InSAR

    Directory of Open Access Journals (Sweden)

    Matthew C. Garthwaite

    2017-06-01

    Full Text Available Trihedral corner reflectors are being increasingly used as point targets in deformation monitoring studies using interferometric synthetic aperture radar (InSAR techniques. The frequency and size dependence of the corner reflector Radar Cross Section (RCS means that no single design can perform equally in all the possible imaging modes and radar frequencies available on the currently orbiting Synthetic Aperture Radar (SAR satellites. Therefore, either a corner reflector design tailored to a specific data type or a compromise design for multiple data types is required. In this paper, I outline the practical and theoretical considerations that need to be made when designing appropriate radar targets, with a focus on supporting multi-frequency SAR data. These considerations are tested by performing field experiments on targets of different size using SAR images from TerraSAR-X, COSMO-SkyMed and RADARSAT-2. Phase noise behaviour in SAR images can be estimated by measuring the Signal-to-Clutter ratio (SCR in individual SAR images. The measured SCR of a point target is dependent on its RCS performance and the influence of clutter near to the deployed target. The SCR is used as a metric to estimate the expected InSAR displacement error incurred by the design of each target and to validate these observations against theoretical expectations. I find that triangular trihedral corner reflectors as small as 1 m in dimension can achieve a displacement error magnitude of a tenth of a millimetre or less in medium-resolution X-band data. Much larger corner reflectors (2.5 m or greater are required to achieve the same displacement error magnitude in medium-resolution C-band data. Compromise designs should aim to satisfy the requirements of the lowest SAR frequency to be used, providing that these targets will not saturate the sensor of the highest frequency to be used. Finally, accurate boresight alignment of the corner reflector can be critical to the overall

  12. INVENTORY OF IRRIGATED RICE ECOSYSTEM USING POLARIMETRIC SAR DATA

    Directory of Open Access Journals (Sweden)

    P. Srikanth

    2012-08-01

    Full Text Available An attempt has been made in the current study to assess the potential of polarimetric SAR data for inventory of kharif rice and the major competing crop like cotton. In the process, physical process of the scattering mechanisms occurring in rice and cotton crops at different phonological stages was studied through the use of temporal Radarsat 2 Fine quadpol SAR data. The temporal dynamics of the volume, double and odd bounce, entropy, anisotropy, alpha parameters and polarimertic signatures, classification through isodata clustering and Wishart techniques were assessed. The Wishart (H-a classification showed higher overall as well as rice and cotton crop accuracies compared to the isodata clustering from Freeman 3-component decomposition. The classification of temporal SAR data sets independently showed that the rice crop forecasting can be advanced with the use of appropriate single date polarimetric SAR data rather than using temporal SAR amplitude data sets with the single polarization in irrigated rice ecosystems

  13. Guided SAR image despeckling with probabilistic non local weights

    Science.gov (United States)

    Gokul, Jithin; Nair, Madhu S.; Rajan, Jeny

    2017-12-01

    SAR images are generally corrupted by granular disturbances called speckle, which makes visual analysis and detail extraction a difficult task. Non Local despeckling techniques with probabilistic similarity has been a recent trend in SAR despeckling. To achieve effective speckle suppression without compromising detail preservation, we propose an improvement for the existing Generalized Guided Filter with Bayesian Non-Local Means (GGF-BNLM) method. The proposed method (Guided SAR Image Despeckling with Probabilistic Non Local Weights) replaces parametric constants based on heuristics in GGF-BNLM method with dynamically derived values based on the image statistics for weight computation. Proposed changes make GGF-BNLM method adaptive and as a result, significant improvement is achieved in terms of performance. Experimental analysis on SAR images shows excellent speckle reduction without compromising feature preservation when compared to GGF-BNLM method. Results are also compared with other state-of-the-art and classic SAR depseckling techniques to demonstrate the effectiveness of the proposed method.

  14. Surface Deformation Observed by InSAR due to Fluid Injection: a Test Study in the Central U.S.

    Science.gov (United States)

    Deng, F.; Dixon, T. H.

    2017-12-01

    The central and eastern U.S. has undergone a dramatic increase in seismicity over the past few years. Many of these recent earthquakes were likely induced by human activities, with underground fluid injection for oil and gas extraction being one of the main contributors. Surface deformation caused by fluid injection has been captured by GPS and InSAR observations in several areas. For example, surface uplift of up to 10 cm due to CO2 injection between 2007 and 2011 was measured by InSAR at an enhanced oil recovery site in west Texas. We are using Texas and Oklahoma as test areas to analyze the potential relationship between surface deformation, underground fluid injection and induced earthquakes. C-band SAR data from ENVISAT and Sentinel-1, and L-band SAR data from ALOS and ALOS-2 are used to form decade-long time series. Based on the surface deformation derived from the time series InSAR data, subsurface volume change and volumetric strain in an elastic half space are estimated. Seismic data provided by the USGS are used to analyze the spatial and temporal distribution pattern of earthquakes, and the potential link between surface deformation and induced earthquakes. The trigger mechanism will be combined with forward modeling to predict seismicity and assess related hazard for future study.

  15. Tracking lava flow emplacement on the east rift zone of Kilauea, Hawai’i with synthetic aperture radar (SAR) coherence

    Science.gov (United States)

    Dietterich, Hannah R.; Poland, Michael P.; Schmidt, David; Cashman, Katharine V.; Sherrod, David R.; Espinosa, Arkin Tapia

    2012-01-01

    Lava flow mapping is both an essential component of volcano monitoring and a valuable tool for investigating lava flow behavior. Although maps are traditionally created through field surveys, remote sensing allows an extraordinary view of active lava flows while avoiding the difficulties of mapping on location. Synthetic aperture radar (SAR) imagery, in particular, can detect changes in a flow field by comparing two images collected at different times with SAR coherence. New lava flows radically alter the scattering properties of the surface, making the radar signal decorrelated in SAR coherence images. We describe a new technique, SAR Coherence Mapping (SCM), to map lava flows automatically from coherence images independent of look angle or satellite path. We use this approach to map lava flow emplacement during the Pu‘u ‘Ō‘ō-Kupaianaha eruption at Kīlauea, Hawai‘i. The resulting flow maps correspond well with field mapping and better resolve the internal structure of surface flows, as well as the locations of active flow paths. However, the SCM technique is only moderately successful at mapping flows that enter vegetation, which is also often decorrelated between successive SAR images. Along with measurements of planform morphology, we are able to show that the length of time a flow stays decorrelated after initial emplacement is linearly related to the flow thickness. Finally, we use interferograms obtained after flow surfaces become correlated to show that persistent decorrelation is caused by post-emplacement flow subsidence.

  16. Relations of SARS-Related Stressors and Coping to Chinese College Students' Psychological Adjustment during the 2003 Beijing SARS Epidemic

    Science.gov (United States)

    Main, Alexandra; Zhou, Qing; Ma, Yue; Luecken, Linda J.; Liu, Xin

    2011-01-01

    This study examined the main and interactive relations of stressors and coping related to severe acute respiratory syndrome (SARS) with Chinese college students' psychological adjustment (psychological symptoms, perceived general health, and life satisfaction) during the 2003 Beijing SARS epidemic. All the constructs were assessed by self-report…

  17. Modelling of potentially promising SARS protease inhibitors

    International Nuclear Information System (INIS)

    Plewczynski, Dariusz; Hoffmann, Marcin; Grotthuss, Marcin von; Knizewski, Lukasz; Rychewski, Leszek; Eitner, Krystian; Ginalski, Krzysztof

    2007-01-01

    In many cases, at the beginning of a high throughput screening experiment some information about active molecules is already available. Active compounds (such as substrate analogues, natural products and inhibitors of related proteins) are often identified in low throughput validation studies on a biochemical target. Sometimes the additional structural information is also available from crystallographic studies on protein and ligand complexes. In addition, the structural or sequence similarity of various protein targets yields a novel possibility for drug discovery. Co-crystallized compounds from homologous proteins can be used to design leads for a new target without co-crystallized ligands. In this paper we evaluate how far such an approach can be used in a real drug campaign, with severe acute respiratory syndrome (SARS) coronavirus providing an example. Our method is able to construct small molecules as plausible inhibitors solely on the basis of the set of ligands from crystallized complexes of a protein target, and other proteins from its structurally homologous family. The accuracy and sensitivity of the method are estimated here by the subsequent use of an electronic high throughput screening flexible docking algorithm. The best performing ligands are then used for a very restrictive similarity search for potential inhibitors of the SARS protease within the million compounds from the Ligand.Info small molecule meta-database. The selected molecules can be passed on for further experimental validation

  18. Modelling of potentially promising SARS protease inhibitors

    Energy Technology Data Exchange (ETDEWEB)

    Plewczynski, Dariusz [Interdisciplinary Centre for Mathematical and Computational Modelling, ICM, Warsaw University, Pawinskiego 5a Street, 02-106 Warsaw (Poland); Hoffmann, Marcin [BioInfoBank Institute, Limanowskiego 24A/16, 60-744 Poznan (Poland); Grotthuss, Marcin von [BioInfoBank Institute, Limanowskiego 24A/16, 60-744 Poznan (Poland); Knizewski, Lukasz [Interdisciplinary Centre for Mathematical and Computational Modelling, ICM, Warsaw University, Pawinskiego 5a Street, 02-106 Warsaw (Poland); Rychewski, Leszek [BioInfoBank Institute, Limanowskiego 24A/16, 60-744 Poznan (Poland); Eitner, Krystian [BioInfoBank Institute, Limanowskiego 24A/16, 60-744 Poznan (Poland); Ginalski, Krzysztof [Interdisciplinary Centre for Mathematical and Computational Modelling, ICM, Warsaw University, Pawinskiego 5a Street, 02-106 Warsaw (Poland)

    2007-07-18

    In many cases, at the beginning of a high throughput screening experiment some information about active molecules is already available. Active compounds (such as substrate analogues, natural products and inhibitors of related proteins) are often identified in low throughput validation studies on a biochemical target. Sometimes the additional structural information is also available from crystallographic studies on protein and ligand complexes. In addition, the structural or sequence similarity of various protein targets yields a novel possibility for drug discovery. Co-crystallized compounds from homologous proteins can be used to design leads for a new target without co-crystallized ligands. In this paper we evaluate how far such an approach can be used in a real drug campaign, with severe acute respiratory syndrome (SARS) coronavirus providing an example. Our method is able to construct small molecules as plausible inhibitors solely on the basis of the set of ligands from crystallized complexes of a protein target, and other proteins from its structurally homologous family. The accuracy and sensitivity of the method are estimated here by the subsequent use of an electronic high throughput screening flexible docking algorithm. The best performing ligands are then used for a very restrictive similarity search for potential inhibitors of the SARS protease within the million compounds from the Ligand.Info small molecule meta-database. The selected molecules can be passed on for further experimental validation.

  19. Simplex GPS and InSAR Inversion Software

    Science.gov (United States)

    Donnellan, Andrea; Parker, Jay W.; Lyzenga, Gregory A.; Pierce, Marlon E.

    2012-01-01

    Changes in the shape of the Earth's surface can be routinely measured with precisions better than centimeters. Processes below the surface often drive these changes and as a result, investigators require models with inversion methods to characterize the sources. Simplex inverts any combination of GPS (global positioning system), UAVSAR (uninhabited aerial vehicle synthetic aperture radar), and InSAR (interferometric synthetic aperture radar) data simultaneously for elastic response from fault and fluid motions. It can be used to solve for multiple faults and parameters, all of which can be specified or allowed to vary. The software can be used to study long-term tectonic motions and the faults responsible for those motions, or can be used to invert for co-seismic slip from earthquakes. Solutions involving estimation of fault motion and changes in fluid reservoirs such as magma or water are possible. Any arbitrary number of faults or parameters can be considered. Simplex specifically solves for any of location, geometry, fault slip, and expansion/contraction of a single or multiple faults. It inverts GPS and InSAR data for elastic dislocations in a half-space. Slip parameters include strike slip, dip slip, and tensile dislocations. It includes a map interface for both setting up the models and viewing the results. Results, including faults, and observed, computed, and residual displacements, are output in text format, a map interface, and can be exported to KML. The software interfaces with the QuakeTables database allowing a user to select existing fault parameters or data. Simplex can be accessed through the QuakeSim portal graphical user interface or run from a UNIX command line.

  20. Studies of Louisiana's Deltas and Wetlands using SAR

    Science.gov (United States)

    Jones, C. E.

    2017-12-01

    Sustainable coastal environments exist in delicate balance between subsidence, erosion, and sea level rise on one hand and accretion of sediment and retention of decomposing organic matter on the other. In this talk we present results from a series of studies using an airborne L-band SAR (UAVSAR) to measure changing conditions in the Mississippi River Delta and coastal wetlands of Louisiana. Change within the Mississippi River delta (MRD), which is a highly engineered environment, is contrasted to those in the Wax Lake Delta, a small, naturally evolving delta located to the west of the current-day lobe of the MRD. The UAVSAR studies provide evidence that in the MRD subsidence and erosion related to human activities are increasing risk of flooding, submergence, and land loss. These are not seen in the Wax Lake Delta, where new land is forming. We evaluate geomorphic and hydrologic changes In the Wax Lake Delta and wetlands hydrologically connected to the Wax Lake Outlet canal that are apparent on the timescales of the UAVSAR data set, which consists of both near-yearly acquisitions (2009-2016) and several series of repeat acquisitions in 2015 and 2016 capturing conditions across a tidal cycle. Using the yearly data, we observe the evolution of subaqueous channels and crevasses in the delta and changes in distributary channels within the wetlands. We use water level change derived from InSAR applied to the rapid repeat data acquired during different stages of a tidal cycle to study the natural pattern of water flux within the delta and the coastal wetlands. The studies, results, and plans for future work will be presented. This work was carried out in part at the Jet Propulsion Laboratory, California Institute of Technology, under contracts with the California Dept. of Water Resources and with the National Aeronautics and Space Administration.

  1. Mapping tectonic and anthropogenic processes in central California using satellite and airborne InSAR

    Science.gov (United States)

    Liu, Z.; Lundgren, P.; Liang, C.; Farr, T. G.; Fielding, E. J.

    2017-12-01

    The improved spatiotemporal resolution of surface deformation from recent satellite and airborne InSAR measurements provides a great opportunity to improve our understanding of both tectonic and non-tectonic processes. In central California the primary plate boundary fault system (San Andreas fault) lies adjacent to the San Joaquin Valley (SJV), a vast structural trough that accounts for about one-sixth of the United Sates' irrigated land and one-fifth of its extracted groundwater. The central San Andreas fault (CSAF) displays a range of fault slip behavior with creeping in its central segment that decreases towards its northwest and southeast ends, where it transitions to being fully locked. Despite much progress, many questions regarding fault and anthropogenic processes in the region still remain. In this study, we combine satellite InSAR and NASA airborne UAVSAR data to image fault and anthropogenic deformation. The UAVSAR data cover fault perpendicular swaths imaged from opposing look directions and fault parallel swaths since 2009. The much finer spatial resolution and optimized viewing geometry provide important constraints on near fault deformation and fault slip at very shallow depth. We performed a synoptic InSAR time series analysis using Sentinel-1, ALOS, and UAVSAR interferograms. We estimate azimuth mis-registration between single look complex (SLC) images of Sentinel-1 in a stack sense to achieve accurate azimuth co-registration between SLC images for low coherence and/or long interval interferometric pairs. We show that it is important to correct large-scale ionosphere features in ALOS-2 ScanSAR data for accurate deformation measurements. Joint analysis of UAVSAR and ALOS interferometry measurements show clear variability in deformation along the fault strike, suggesting variable fault creep and locking at depth and along strike. In addition to fault creep, the L-band ALOS, and especially ALOS-2 ScanSAR interferometry, show large-scale ground

  2. Compressed Sensing mm-Wave SAR for Non-Destructive Testing Applications Using Multiple Weighted Side Information

    Directory of Open Access Journals (Sweden)

    Mathias Becquaert

    2018-05-01

    Full Text Available This work explores an innovative strategy for increasing the efficiency of compressed sensing applied on mm-wave SAR sensing using multiple weighted side information. The approach is tested on synthetic and on real non-destructive testing measurements performed on a 3D-printed object with defects while taking advantage of multiple previous SAR images of the object with different degrees of similarity. The tested algorithm attributes autonomously weights to the side information at two levels: (1 between the components inside the side information and (2 between the different side information. The reconstruction is thereby almost immune to poor quality side information while exploiting the relevant components hidden inside the added side information. The presented results prove that, in contrast to common compressed sensing, good SAR image reconstruction is achieved at subsampling rates far below the Nyquist rate. Moreover, the algorithm is shown to be much more robust for low quality side information compared to coherent background subtraction.

  3. AN UNSUPERVISED CHANGE DETECTION BASED ON TEST STATISTIC AND KI FROM MULTI-TEMPORAL AND FULL POLARIMETRIC SAR IMAGES

    Directory of Open Access Journals (Sweden)

    J. Q. Zhao

    2016-06-01

    Full Text Available Accurate and timely change detection of Earth’s surface features is extremely important for understanding relationships and interactions between people and natural phenomena. Many traditional methods of change detection only use a part of polarization information and the supervised threshold selection. Those methods are insufficiency and time-costing. In this paper, we present a novel unsupervised change-detection method based on quad-polarimetric SAR data and automatic threshold selection to solve the problem of change detection. First, speckle noise is removed for the two registered SAR images. Second, the similarity measure is calculated by the test statistic, and automatic threshold selection of KI is introduced to obtain the change map. The efficiency of the proposed method is demonstrated by the quad-pol SAR images acquired by Radarsat-2 over Wuhan of China.

  4. Change detection in full and dual polarization sar data and the complex wishart distribution

    DEFF Research Database (Denmark)

    Nielsen, Allan Aasbjerg; Conradsen, Knut; Skriver, Henning

    A test statistic for equality of two complex variance-covariance matrices following the complex Wishart distribution with an associated probability of observing a smaller value of the test statistic is sketched. We demonstrate the use of the test statistic and the associated probability measure f...... for change detection in both full and dual polarimetry synthetic aperture radar (SAR) data collected by the Danish EMISAR system....

  5. Mechanisms of the electron density depletion in the SAR arc region

    OpenAIRE

    A. V. Pavlov

    1996-01-01

    This study compares the measurements of electron density and temperature and the integral airglow intensity at 630 nm in the SAR arc region and slightly south of this (obtained by the Isis 2 spacecraft during the 18 December 1971 magnetic storm), with the model results obtained using the time dependent one-dimensional mathematical model of the Earth's ionosphere and plasmasphere. The explicit expression in the third Enskog approximation for the electron thermal conductivity coefficient i...

  6. Information extraction from dynamic PS-InSAR time series using machine learning

    Science.gov (United States)

    van de Kerkhof, B.; Pankratius, V.; Chang, L.; van Swol, R.; Hanssen, R. F.

    2017-12-01

    Due to the increasing number of SAR satellites, with shorter repeat intervals and higher resolutions, SAR data volumes are exploding. Time series analyses of SAR data, i.e. Persistent Scatterer (PS) InSAR, enable the deformation monitoring of the built environment at an unprecedented scale, with hundreds of scatterers per km2, updated weekly. Potential hazards, e.g. due to failure of aging infrastructure, can be detected at an early stage. Yet, this requires the operational data processing of billions of measurement points, over hundreds of epochs, updating this data set dynamically as new data come in, and testing whether points (start to) behave in an anomalous way. Moreover, the quality of PS-InSAR measurements is ambiguous and heterogeneous, which will yield false positives and false negatives. Such analyses are numerically challenging. Here we extract relevant information from PS-InSAR time series using machine learning algorithms. We cluster (group together) time series with similar behaviour, even though they may not be spatially close, such that the results can be used for further analysis. First we reduce the dimensionality of the dataset in order to be able to cluster the data, since applying clustering techniques on high dimensional datasets often result in unsatisfying results. Our approach is to apply t-distributed Stochastic Neighbor Embedding (t-SNE), a machine learning algorithm for dimensionality reduction of high-dimensional data to a 2D or 3D map, and cluster this result using Density-Based Spatial Clustering of Applications with Noise (DBSCAN). The results show that we are able to detect and cluster time series with similar behaviour, which is the starting point for more extensive analysis into the underlying driving mechanisms. The results of the methods are compared to conventional hypothesis testing as well as a Self-Organising Map (SOM) approach. Hypothesis testing is robust and takes the stochastic nature of the observations into account

  7. Certainties and Uncertainties Facing Emerging Respiratory Infectious Diseases: Lessons from SARS

    Directory of Open Access Journals (Sweden)

    Yee-Chun Chen

    2008-06-01

    Full Text Available Every emerging infectious disease is a challenge to the whole of mankind. There are uncertainties regarding whether there will be a pandemic, if it will be caused by the highly pathogenic H5N1 influenza virus, when or where it will occur, how imminent or how severe it will be. No one can accurately predict if and when a given virus will become a pandemic virus. Pandemic prevention strategies must be based on preparing for the unexpected and being capable of reacting accordingly. There is growing evidence that infection control measures were helpful in containment of severe acute respiratory syndrome (SARS as well as avian influenza. Compliance of standard infection control measures, intensive promotion of hand and respiratory hygiene, vigilance and triage of patients with febrile illness, and specific infection control measures are key components to contain a highly contagious disease in hospital and to protect healthcare workers, patients and visitors. The importance of standard precautions for any patient and cleaning and disinfection for the healthcare environment cannot be overemphasized. SARS illustrated dramatically the potential of air travel and globalization for the dissemination of an emerging infectious disease. To prevent the potential serious consequences of pandemic influenza, timely implementation of pharmaceutical and non-pharmaceutical interventions locally within the outbreak area is the key to minimizing global spread. Herein, we relate our perspective on useful lessons derived from a review of the SARS epidemic that may be useful to physicians, especially when looking ahead to the next epidemic.

  8. Regional SAR Image Segmentation Based on Fuzzy Clustering with Gamma Mixture Model

    Science.gov (United States)

    Li, X. L.; Zhao, Q. H.; Li, Y.

    2017-09-01

    Most of stochastic based fuzzy clustering algorithms are pixel-based, which can not effectively overcome the inherent speckle noise in SAR images. In order to deal with the problem, a regional SAR image segmentation algorithm based on fuzzy clustering with Gamma mixture model is proposed in this paper. First, initialize some generating points randomly on the image, the image domain is divided into many sub-regions using Voronoi tessellation technique. Each sub-region is regarded as a homogeneous area in which the pixels share the same cluster label. Then, assume the probability of the pixel to be a Gamma mixture model with the parameters respecting to the cluster which the pixel belongs to. The negative logarithm of the probability represents the dissimilarity measure between the pixel and the cluster. The regional dissimilarity measure of one sub-region is defined as the sum of the measures of pixels in the region. Furthermore, the Markov Random Field (MRF) model is extended from pixels level to Voronoi sub-regions, and then the regional objective function is established under the framework of fuzzy clustering. The optimal segmentation results can be obtained by the solution of model parameters and generating points. Finally, the effectiveness of the proposed algorithm can be proved by the qualitative and quantitative analysis from the segmentation results of the simulated and real SAR images.

  9. SAR Study of Mobile Phones as a function of Antenna Q

    DEFF Research Database (Denmark)

    Bahramzy, Pevand; Svendsen, Simon; Jagielski, Ole

    2015-01-01

    density associated with high-Q antennas. The higher energy stored in the electric and magnetic near-field components can result in higher SAR. Hence, SAR study of high-Q antennas is necessary which, if not addressed, might not comply with the SAR safety guidelines. In this paper, SAR as a function...

  10. Spacial Variation in SAR Images of Different Resolution for Agricultural Fields

    DEFF Research Database (Denmark)

    Sandholt, Inge; Skriver, Henning

    1999-01-01

    The spatial variation in two types of Synthetic Aperture Radar (SAR) images covering agricultural fields is analysed. C-band polarimetric SAR data from the Danish airborne SAR, EMISAR, have been compared to space based ERS-1 C-band SAR with respect to scale and effect of polarization. The general...

  11. FlexSAR, a high quality, flexible, cost effective, prototype SAR system

    Science.gov (United States)

    Jensen, Mark; Knight, Chad; Haslem, Brent

    2016-05-01

    The FlexSAR radar system was designed to be a high quality, low-cost, flexible research prototype instrument. Radar researchers and practitioners often desire the ability to prototype new or advanced configurations, yet the ability to enhance or upgrade existing radar systems can be cost prohibitive. FlexSAR answers the need for a flexible radar system that can be extended easily, with minimal cost and time expenditures. The design approach focuses on reducing the resources required for developing and validating new advanced radar modalities. Such an approach fosters innovation and provides risk reduction since actual radar data can be collected in the appropriate mode, processed, and analyzed early in the development process. This allows for an accurate, detailed understanding of the corresponding trade space. This paper is a follow-on to last years paper and discusses the advancements that have been made to the FlexSAR system. The overall system architecture is discussed and presented along with several examples illustrating the system utility.

  12. Alaska Synthetic Aperture Radar (SAR) Facility science data processing architecture

    Science.gov (United States)

    Hilland, Jeffrey E.; Bicknell, Thomas; Miller, Carol L.

    1991-01-01

    The paper describes the architecture of the Alaska SAR Facility (ASF) at Fairbanks, being developed to generate science data products for supporting research in sea ice motion, ice classification, sea-ice-ocean interaction, glacier behavior, ocean waves, and hydrological and geological study areas. Special attention is given to the individual substructures of the ASF: the Receiving Ground Station (RGS), the SAR Processor System, and the Interactive Image Analysis System. The SAR data will be linked to the RGS by the ESA ERS-1 and ERS-2, the Japanese ERS-1, and the Canadian Radarsat.

  13. SAR antenna design for ambiguity and multipath suppression

    DEFF Research Database (Denmark)

    Christensen, Erik Lintz; Dich, Mikael

    1993-01-01

    A high resolution airborne synthetic aperture radar (SAR) has been developed at the Electromagnetics Institute (EMI) for remote sensing applications. The paper considers the radiation of antennas for a SAR system from a systems perspective. The basic specifications of an idealised antenna...... are obtained from the required swath and the azimuth footprint needed for the SAR processing. The radiation from a real antenna causes unwanted signal returns that lead to intensity variations (multipath) and ghost echoes (ambiguity). Additional specifications are deduced by considering these signals...

  14. SAR image effects on coherence and coherence estimation.

    Energy Technology Data Exchange (ETDEWEB)

    Bickel, Douglas Lloyd

    2014-01-01

    Radar coherence is an important concept for imaging radar systems such as synthetic aperture radar (SAR). This document quantifies some of the effects in SAR which modify the coherence. Although these effects can disrupt the coherence within a single SAR image, this report will focus on the coherence between separate images, such as for coherent change detection (CCD) processing. There have been other presentations on aspects of this material in the past. The intent of this report is to bring various issues that affect the coherence together in a single report to support radar engineers in making decisions about these matters.

  15. Program Merges SAR Data on Terrain and Vegetation Heights

    Science.gov (United States)

    Siqueira, Paul; Hensley, Scott; Rodriguez, Ernesto; Simard, Marc

    2007-01-01

    X/P Merge is a computer program that estimates ground-surface elevations and vegetation heights from multiple sets of data acquired by the GeoSAR instrument [a terrain-mapping synthetic-aperture radar (SAR) system that operates in the X and bands]. X/P Merge software combines data from X- and P-band digital elevation models, SAR backscatter magnitudes, and interferometric correlation magnitudes into a simplified set of output topographical maps of ground-surface elevation and tree height.

  16. Mapping and monitoring renewable resources with space SAR

    Science.gov (United States)

    Ulaby, F. T.; Brisco, B.; Dobson, M. C.; Moezzi, S.

    1983-01-01

    The SEASAT-A SAR and SIR-A imagery was examined to evaluate the quality and type of information that can be extracted and used to monitor renewable resources on Earth. Two tasks were carried out: (1) a land cover classification study which utilized two sets of imagery acquired by the SEASAT-A SAR, one set by SIR-A, and one LANDSAT set (4 bands); and (2) a change detection to examine differences between pairs of SEASAT-A SAR images and relates them to hydrologic and/or agronomic variations in the scene.

  17. Wind mapping offshore in coastal Mediterranean area using SAR images

    DEFF Research Database (Denmark)

    Calaudi, Rosamaria; Arena, Felice; Badger, Merete

    Satellite observations of the ocean surface from Synthetic Aperture Radars (SAR) provide information about the spatial wind variability over large areas. This is of special interest in the Mediterranean, where spatial wind information is only provided by sparse buoys, often with long periods...... of missing data. Here, we focus on evaluating the use of SAR for offshore wind mapping. Preliminary results from the analysis of SAR-based ocean winds in Mediterranean areas show interesting large scale wind flow features consistent with results from previous studies using numerical models and space borne...

  18. Segment-based change detection for polarimetric SAR data

    DEFF Research Database (Denmark)

    Skriver, Henning; Nielsen, Allan Aasbjerg; Conradsen, Knut

    2006-01-01

    that is needed compared to single polarisation SAR to provide reliable and robust detection of changes. Polarimetric SAR data will be available from satellites in the near future, e.g. the Japanese ALOS, the Canadian Radarsat-2 and the German TerraSAR-X. An appropriate way of representing multi-look fully...... be split into a number of smaller fields, a building may be removed from or added to some area, hedgerows may be removed/added or other type of vegetated areas may be partly removed or added. In this case, ambiguities may arise when segments have changed shape and extent from one image to another...

  19. From genome to antivirals: SARS as a test tube.

    Science.gov (United States)

    Kliger, Yossef; Levanon, Erez Y; Gerber, Doron

    2005-03-01

    The severe acute respiratory syndrome (SARS) epidemic brought into the spotlight the need for rapid development of effective anti-viral drugs against newly emerging viruses. Researchers have leveraged the 20-year battle against AIDS into a variety of possible treatments for SARS. Most prominently, based solely on viral genome information, silencers of viral genes, viral-enzyme blockers and viral-entry inhibitors were suggested as potential therapeutic agents for SARS. In particular, inhibitors of viral entry, comprising therapeutic peptides, were based on the recently launched anti-HIV drug enfuvirtide. This could represent one of the most direct routes from genome sequencing to the discovery of antiviral drugs.

  20. SAR Agriculture Rice Production Estimation (SARPE)

    Science.gov (United States)

    Raimadoya, M.

    2013-12-01

    The study of SAR Agriculture Rice Production Estimation (SARPE) was held in Indonesia on 2012, as part of Asia-Rice Crop Estimation & Monitoring (Asia-RiCE), which is a component for the GEO Global Agricultural Monitoring (GEOGLAM) initiative. The study was expected to give a breakthrough result, by using radar technology and paradigm shift of the standard production estimation system from list frame to area frame approach. This initial product estimation system is expected to be refined (fine tuning) in 2013, by participating as part of Technical Demonstration Site (Phase -1A) of Asia-RICE. The implementation period of this initial study was from the date of March 12 to December 10, 2012. The implementation of the study was done by following the approach of the BIMAS-21 framework, which has been developed since 2008. The results of this study can be briefly divided into two major components, namely: Rice-field Baseline Mapping (PESBAK - Peta Sawah Baku) and Crop Growth Monitoring. Rice-fields were derived from the mapping results of the Ministry of Agriculture (Kemtan), and validated through Student Extension Campaign of the Faculty of Agriculture, Bogor Agricultural University (IPB). While for the crop growth, it was derived from the results of image analysis process. The analysis was done, either on radar/Radarsat-2 (medium resolution) or optical/ MODIS (low resolution), based on the Planting Calendar (KATAM) of Kemtan. In this case, the planting season II/2012-2013 of rice production centers in West Java Province (Karawang, Subang and Indramayu counties). The selection of crop season and county were entirely dependent on the quality of the available PESBAK and procurement process of radar imagery. The PESBAK is still in the form of block instead of fields, so it can not be directly utilized in this study. Efforts to improve the PESBAK can not be optimal because the provided satellite image (ECW format) is not the original one. While the procurement process of

  1. An algorithm for 3D target scatterer feature estimation from sparse SAR apertures

    Science.gov (United States)

    Jackson, Julie Ann; Moses, Randolph L.

    2009-05-01

    We present an algorithm for extracting 3D canonical scattering features from complex targets observed over sparse 3D SAR apertures. The algorithm begins with complex phase history data and ends with a set of geometrical features describing the scene. The algorithm provides a pragmatic approach to initialization of a nonlinear feature estimation scheme, using regularization methods to deconvolve the point spread function and obtain sparse 3D images. Regions of high energy are detected in the sparse images, providing location initializations for scattering center estimates. A single canonical scattering feature, corresponding to a geometric shape primitive, is fit to each region via nonlinear optimization of fit error between the regularized data and parametric canonical scattering models. Results of the algorithm are presented using 3D scattering prediction data of a simple scene for both a densely-sampled and a sparsely-sampled SAR measurement aperture.

  2. Autofocus algorithm for curvilinear SAR imaging

    Science.gov (United States)

    Bleszynski, E.; Bleszynski, M.; Jaroszewicz, T.

    2012-05-01

    We describe an approach to autofocusing for large apertures on curved SAR trajectories. It is a phase-gradient type method in which phase corrections compensating trajectory perturbations are estimated not directly from the image itself, but rather on the basis of partial" SAR data { functions of the slow and fast times { recon- structed (by an appropriate forward-projection procedure) from windowed scene patches, of sizes comparable to distances between distinct targets or localized features of the scene. The resulting partial data" can be shown to contain the same information on the phase perturbations as that in the original data, provided the frequencies of the perturbations do not exceed a quantity proportional to the patch size. The algorithm uses as input a sequence of conventional scene images based on moderate-size subapertures constituting the full aperture for which the phase corrections are to be determined. The subaperture images are formed with pixel sizes comparable to the range resolution which, for the optimal subaperture size, should be also approximately equal the cross-range resolution. The method does not restrict the size or shape of the synthetic aperture and can be incorporated in the data collection process in persistent sensing scenarios. The algorithm has been tested on the publicly available set of GOTCHA data, intentionally corrupted by random-walk-type trajectory uctuations (a possible model of errors caused by imprecise inertial navigation system readings) of maximum frequencies compatible with the selected patch size. It was able to eciently remove image corruption for apertures of sizes up to 360 degrees.

  3. Radionuclide release calculations for SAR-08

    International Nuclear Information System (INIS)

    Thomson, Gavin; Miller, Alex; Smith, Graham; Jackson, Duncan

    2008-04-01

    Following a review by the Swedish regulatory authorities of the post-closure safety assessment of the SFR 1 disposal facility for low and intermediate waste (L/ILW), SAFE, the SKB has prepared an updated assessment called SAR-08. This report describes the radionuclide release calculations that have been undertaken as part of SAR-08. The information, assumptions and data used in the calculations are reported and the results are presented. The calculations address issues raised in the regulatory review, but also take account of new information including revised inventory data. The scenarios considered include the main case of expected behaviour of the system, with variants; low probability releases, and so-called residual scenarios. Apart from these scenario uncertainties, data uncertainties have been examined using a probabilistic approach. Calculations have been made using the AMBER software. This allows all the component features of the assessment model to be included in one place. AMBER has been previously used to reproduce results the corresponding calculations in the SAFE assessment. It is also used in demonstration of the IAEA's near surface disposal assessment methodology ISAM and has been subject to very substantial verification tests and has been used in verifying other assessment codes. Results are presented as a function of time for the release of radionuclides from the near field, and then from the far field into the biosphere. Radiological impacts of the releases are reported elsewhere. Consideration is given to each radionuclide and to each component part of the repository. The releases from the entire repository are also presented. The peak releases rates are, for most scenarios, due to organic C-14. Other radionuclides which contribute to peak release rates include inorganic C-14, Ni-59 and Ni-63. (author)

  4. Radionuclide release calculations for SAR-08

    Energy Technology Data Exchange (ETDEWEB)

    Thomson, Gavin; Miller, Alex; Smith, Graham; Jackson, Duncan (Enviros Consulting Ltd, Wolverhampton (United Kingdom))

    2008-04-15

    Following a review by the Swedish regulatory authorities of the post-closure safety assessment of the SFR 1 disposal facility for low and intermediate waste (L/ILW), SAFE, the SKB has prepared an updated assessment called SAR-08. This report describes the radionuclide release calculations that have been undertaken as part of SAR-08. The information, assumptions and data used in the calculations are reported and the results are presented. The calculations address issues raised in the regulatory review, but also take account of new information including revised inventory data. The scenarios considered include the main case of expected behaviour of the system, with variants; low probability releases, and so-called residual scenarios. Apart from these scenario uncertainties, data uncertainties have been examined using a probabilistic approach. Calculations have been made using the AMBER software. This allows all the component features of the assessment model to be included in one place. AMBER has been previously used to reproduce results the corresponding calculations in the SAFE assessment. It is also used in demonstration of the IAEA's near surface disposal assessment methodology ISAM and has been subject to very substantial verification tests and has been used in verifying other assessment codes. Results are presented as a function of time for the release of radionuclides from the near field, and then from the far field into the biosphere. Radiological impacts of the releases are reported elsewhere. Consideration is given to each radionuclide and to each component part of the repository. The releases from the entire repository are also presented. The peak releases rates are, for most scenarios, due to organic C-14. Other radionuclides which contribute to peak release rates include inorganic C-14, Ni-59 and Ni-63. (author)

  5. A NEW SAR CLASSIFICATION SCHEME FOR SEDIMENTS ON INTERTIDAL FLATS BASED ON MULTI-FREQUENCY POLARIMETRIC SAR IMAGERY

    Directory of Open Access Journals (Sweden)

    W. Wang

    2017-11-01

    Full Text Available We present a new classification scheme for muddy and sandy sediments on exposed intertidal flats, which is based on synthetic aperture radar (SAR data, and use ALOS-2 (L-band, Radarsat-2 (C-band and TerraSAR-X (X-band fully polarimetric SAR imagery to demonstrate its effectiveness. Four test sites on the German North Sea coast were chosen, which represent typical surface compositions of different sediments, vegetation, and habitats, and of which a large amount of SAR is used for our analyses. Both Freeman-Durden and Cloude-Pottier polarimetric decomposition are utilized, and an additional descriptor called Double-Bounce Eigenvalue Relative Difference (DERD is introduced into the feature sets instead of the original polarimetric intensity channels. The classification is conducted following Random Forest theory, and the results are verified using ground truth data from field campaigns and an existing classification based on optical imagery. In addition, the use of Kennaugh elements for classification purposes is demonstrated using both fully and dual-polarization multi-frequency and multi-temporal SAR data. Our results show that the proposed classification scheme can be applied for the discrimination of muddy and sandy sediments using L-, C-, and X-band SAR images, while SAR imagery acquired at short wavelengths (C- and X-band can also be used to detect more detailed features such as bivalve beds on intertidal flats.

  6. Ship Classification with High Resolution TerraSAR-X Imagery Based on Analytic Hierarchy Process

    Directory of Open Access Journals (Sweden)

    Zhi Zhao

    2013-01-01

    Full Text Available Ship surveillance using space-borne synthetic aperture radar (SAR, taking advantages of high resolution over wide swaths and all-weather working capability, has attracted worldwide attention. Recent activity in this field has concentrated mainly on the study of ship detection, but the classification is largely still open. In this paper, we propose a novel ship classification scheme based on analytic hierarchy process (AHP in order to achieve better performance. The main idea is to apply AHP on both feature selection and classification decision. On one hand, the AHP based feature selection constructs a selection decision problem based on several feature evaluation measures (e.g., discriminability, stability, and information measure and provides objective criteria to make comprehensive decisions for their combinations quantitatively. On the other hand, we take the selected feature sets as the input of KNN classifiers and fuse the multiple classification results based on AHP, in which the feature sets’ confidence is taken into account when the AHP based classification decision is made. We analyze the proposed classification scheme and demonstrate its results on a ship dataset that comes from TerraSAR-X SAR images.

  7. Detection and Characterization of Hedgerows Using TerraSAR-X Imagery

    Directory of Open Access Journals (Sweden)

    Julie Betbeder

    2014-04-01

    Full Text Available Whilst most hedgerow functions depend upon hedgerow structure and hedgerow network patterns, in many ecological studies information on the fragmentation of hedgerows network and canopy structure is often retrieved in the field in small areas using accurate ground surveys and estimated over landscapes in a semi-quantitative manner. This paper explores the use of radar SAR imagery to (i detect hedgerow networks; and (ii describe the hedgerow canopy heterogeneity using TerraSAR-X imagery. The extraction of hedgerow networks was achieved using an object-oriented method using two polarimetric parameters: the Single Bounce and the Shannon Entropy derived from one TerraSAR-X image. The hedgerow canopy heterogeneity estimated from field measurements was compared with two backscattering coefficients and three polarimetric parameters derived from the same image. The results show that the hedgerow network and its fragmentation can be identified with a very good accuracy (Kappa index: 0.92. This study also reveals the high correlation between one polarimetric parameter, the Shannon entropy, and the canopy fragmentation measured in the field. Therefore, VHSR radar images can both precisely detect the presence of wooded hedgerow networks and characterize their structure, which cannot be achieved with optical images.

  8. Double Bounce Component in Cross-Polarimetric SAR from a New Scattering Target Decomposition

    Science.gov (United States)

    Hong, Sang-Hoon; Wdowinski, Shimon

    2013-08-01

    Common vegetation scattering theories assume that the Synthetic Aperture Radar (SAR) cross-polarization (cross-pol) signal represents solely volume scattering. We found this assumption incorrect based on SAR phase measurements acquired over the south Florida Everglades wetlands indicating that the cross-pol radar signal often samples the water surface beneath the vegetation. Based on these new observations, we propose that the cross-pol measurement consists of both volume scattering and double bounce components. The simplest multi-bounce scattering mechanism that generates cross-pol signal occurs by rotated dihedrals. Thus, we use the rotated dihedral mechanism with probability density function to revise some of the vegetation scattering theories and develop a three- component decomposition algorithm with single bounce, double bounce from both co-pol and cross-pol, and volume scattering components. We applied the new decomposition analysis to both urban and rural environments using Radarsat-2 quad-pol datasets. The decomposition of the San Francisco's urban area shows higher double bounce scattering and reduced volume scattering compared to other common three-component decomposition. The decomposition of the rural Everglades area shows that the relations between volume and cross-pol double bounce depend on the vegetation density. The new decomposition can be useful to better understand vegetation scattering behavior over the various surfaces and the estimation of above ground biomass using SAR observations.

  9. MERGING AIRBORNE LIDAR DATA AND SATELLITE SAR DATA FOR BUILDING CLASSIFICATION

    Directory of Open Access Journals (Sweden)

    T. Yamamoto

    2015-05-01

    Full Text Available A frequent map revision is required in GIS applications, such as disaster prevention and urban planning. In general, airborne photogrammetry and LIDAR measurements are applied to geometrical data acquisition for automated map generation and revision. However, attribute data acquisition and classification depend on manual editing works including ground surveys. In general, airborne photogrammetry and LiDAR measurements are applied to geometrical data acquisition for automated map generation and revision. However, these approaches classify geometrical attributes. Moreover, ground survey and manual editing works are finally required in attribute data classification. On the other hand, although geometrical data extraction is difficult, SAR data have a possibility to automate the attribute data acquisition and classification. The SAR data represent microwave reflections on various surfaces of ground and buildings. There are many researches related to monitoring activities of disaster, vegetation, and urban. Moreover, we have an opportunity to acquire higher resolution data in urban areas with new sensors, such as ALOS2 PALSAR2. Therefore, in this study, we focus on an integration of airborne LIDAR data and satellite SAR data for building extraction and classification.

  10. Influence of different DEMs on the quality of the InSAR results: case study over Bankya and Mirovo areas

    Science.gov (United States)

    Nikolov, Hristo; Atanasova, Mila

    2017-10-01

    One of the key input parameters in obtaining end products from SAR data is the DEM used during their processing. This holds true especially when persistent scatterers InSAR method should be applied for example to study slow moving landslides or subsidence. Since nowadays most of the raw SAR data are of space borne origin for their correct processing to high precision products for relatively small areas with centimeter accuracy a DEM taking into account the particularities of the local topography is needed. Most of the DEMs used by the SAR processing software such as SRTM or ASTER are obtained by the same type of instrument and present some disagreements with height information acquired by leveling measurements or other geodetic means. This was the motivation for initiating this research - to prove the need of creating and using local DEM in SAR data processing at small scale and to check what the magnitude of the discrepancy between final InSAR products is in both cases where SRTM/ASTER and local DEM has been used. In addition investigated were two scenarios for SAR data processing - one with small baseline between image pairs and one having large baseline image pairs - in order to find out in which case local DEM has bigger impact. In course of this study two reference areas were considered - Bankya village near Sofia (SW region of Bulgaria) and Mirovo salt extraction site (NE region of Bulgaria). The reason those areas were selected lies in the high number of landslides registered and monitored by the competent authorities in the mentioned locations. The significance of the results obtained is witnessed by the fact that both sites we used have been included as reference sites for Bulgaria in the PanGeo EU funded project dealing with delivering information regarding ground instability geohazard as areas prone to subsidence of natural and manmade origin. In the said project largest part of the information has been extracted from Envisat SAR data, but now this

  11. Using PS-InSAR data in landslide hazard management: the case of Veneto Region (NE Italy)

    Science.gov (United States)

    Floris, Mario; Viganò, Alessandro; Busnardo, Enrico; Arziliero, Luciano; Zanette, Doriano

    2013-04-01

    The Project Persistent Scatterers Interferometry, performed by the Italian Ministry of Environment and Territory of the Sea (METS) in the framework of the Extraordinary Plan of Environmental Remote Sensing, has made available a high quantity of data useful for local Authorities (Regions, Provinces, and Municipalities) in the management of the main geological hazards, such as landslides, subsidence, and sinkholes. The main output of the Project consists of ground displacements and velocities measured at target points over the entire Italian territory by using PS-InSAR processing technique applied to SAR data acquired by satellites ESA (European Space Agency) ERS-1 and ERS-2 (Earth Resources Satellite) and ENVISAT (Environmental Satellite) in the period 1992-2010. Description and results of the Project are available for public browsing at the geoportal of the METS (http://www.pcn.minambiente.it). On the basis of PS-InSAR data, several studies have been recently performed for the identification and characterization of landslides both at small and large scale. These studies led to a more precise delimitation of instable areas and to a better evaluation of the state of activity of mass movements. But, as now well known, interferometry techniques can't be applied to the whole territory due to geometric distortions in SAR data acquisition and to ground conditions. In this work we analyze the potentiality of PS-InSAR data from the Project Persistent Scatterers Interferometry in landslide hazard management of the Veneto Region, located in the north-eastern part of Italy. A synthetic description on the main features of landslides affecting the Region is reported, then the percentage of instabilities where PS-InSAR data can be used, is calculated. At the scale of the entire Region we suggest to follow the method proposed in the scientific literature to evaluate the state of activity of landslides on the basis of the measured velocities at the ground surface, while at local

  12. Groundwater depletion in Central Mexico: Use of GRACE and InSAR to support water resources management

    Science.gov (United States)

    Castellazzi, Pascal; Martel, Richard; Rivera, Alfonso; Huang, Jianliang; Pavlic, Goran; Calderhead, Angus I.; Chaussard, Estelle; Garfias, Jaime; Salas, Javier

    2016-08-01

    Groundwater deficits occur in several areas of Central Mexico, where water resource assessment is limited by the availability and reliability of field data. In this context, GRACE and InSAR are used to remotely assess groundwater storage loss in one of Mexico's most important watersheds in terms of size and economic activity: the Lerma-Santiago-Pacifico (LSP). In situ data and Land Surface Models are used to subtract soil moisture and surface water storage changes from the total water storage change measured by GRACE satellites. As a result, groundwater mass change time-series are obtained for a 12 years period. ALOS-PALSAR images acquired from 2007 to 2011 were processed using the SBAS-InSAR algorithm to reveal areas subject to ground motion related to groundwater over-exploitation. In the perspective of providing guidance for groundwater management, GRACE and InSAR observations are compared with official water budgets and field observations. InSAR-derived subsidence mapping generally agrees well with official water budgets, and shows that deficits occur mainly in cities and irrigated agricultural areas. GRACE does not entirely detect the significant groundwater losses largely reported by official water budgets, literature and InSAR observations. The difference is interpreted as returns of wastewater to the groundwater flow systems, which limits the watershed scale groundwater depletion but suggests major impacts on groundwater quality. This phenomenon is enhanced by ground fracturing as noticed in the field. Studying the fate of the extracted groundwater is essential when comparing GRACE data with higher resolution observations, and particularly in the perspective of further InSAR/GRACE combination in hydrogeology.

  13. Precise Determination of the Baseline Between the TerraSAR-X and TanDEM-X Satellites

    Science.gov (United States)

    Koenig, Rolf; Rothacher, Markus; Michalak, Grzegorz; Moon, Yongjin

    TerraSAR-X, launched on June 15, 2007, and TanDEM-X, to be launched in September 2009, both carry the Tracking, Occultation and Ranging (TOR) category A payload instrument package. The TOR consists of a high-precision dual-frequency GPS receiver, called Integrated GPS Occultation Receiver (IGOR), for precise orbit determination and atmospheric sounding and a Laser retro-reflector (LRR) serving as target for the global Satellite Laser Ranging (SLR) ground station network. The TOR is supplied by the GeoForschungsZentrum Potsdam (GFZ) Germany, and the Center for Space Research (CSR), Austin, Texas. The objective of the German/US collaboration is twofold: provision of atmospheric profiles for use in numerical weather predictions and climate studies from the occultation data and precision SAR data processing based on precise orbits and atmospheric products. For the scientific objectives of the TanDEM- X mission, i.e., bi-static SAR together with TerraSAR-X, the dual-frequency GPS receiver is of vital importance for the millimeter level determination of the baseline or distance between the two spacecrafts. The paper discusses the feasibility of generating millimeter baselines by the example of GRACE, where for validation the distance between the two GRACE satellites is directly available from the micrometer-level intersatellite link measurements. The distance of the GRACE satellites is some 200 km, the distance of the TerraSAR-X/TanDEM-X formation will be some 200 meters. Therefore the proposed approach is then subject to a simulation of the foreseen TerraSAR-X/TanDEM-X formation. The effect of varying space environmental conditions, of possible phase center variations, multi path, and of varying center of mass of the spacecrafts are evaluated and discussed.

  14. Space-Borne and Ground-Based InSAR Data Integration: The Åknes Test Site

    Directory of Open Access Journals (Sweden)

    Federica Bardi

    2016-03-01

    Full Text Available This work concerns a proposal of the integration of InSAR (Interferometric Synthetic Aperture Radar data acquired by ground-based (GB and satellite platforms. The selected test site is the Åknes rockslide, which affects the western Norwegian coast. The availability of GB-InSAR and satellite InSAR data and the accessibility of a wide literature make the landslide suitable for testing the proposed procedure. The first step consists of the organization of a geodatabase, performed in the GIS environment, containing all of the available data. The second step concerns the analysis of satellite and GB-InSAR data, separately. Two datasets, acquired by RADARSAT-2 (related to a period between October 2008 and August 2013 and by a combination of TerraSAR-X and TanDEM-X (acquired between July 2010 and October 2012, both of them in ascending orbit, processed applying SBAS (Small BAseline Subset method, are available. GB-InSAR data related to five different campaigns of measurements, referred to the summer seasons of 2006, 2008, 2009, 2010 and 2012, are available, as well. The third step relies on data integration, performed firstly from a qualitative point of view and later from a semi-quantitative point of view. The results of the proposed procedure have been validated by comparing them to GPS (Global Positioning System data. The proposed procedure allowed us to better define landslide sectors in terms of different ranges of displacements. From a qualitative point of view, stable and unstable areas have been distinguished. In the sector concerning movement, two different sectors have been defined thanks to the results of the semi-quantitative integration step: the first sector, concerning displacement values higher than 10 mm, and the 2nd sector, where the displacements did not exceed a 10-mm value of displacement in the analyzed period.

  15. Curvelet-based compressive sensing for InSAR raw data

    Science.gov (United States)

    Costa, Marcello G.; da Silva Pinho, Marcelo; Fernandes, David

    2015-10-01

    The aim of this work is to evaluate the compression performance of SAR raw data for interferometry applications collected by airborne from BRADAR (Brazilian SAR System operating in X and P bands) using the new approach based on compressive sensing (CS) to achieve an effective recovery with a good phase preserving. For this framework is desirable a real-time capability, where the collected data can be compressed to reduce onboard storage and bandwidth required for transmission. In the CS theory, a sparse unknown signals can be recovered from a small number of random or pseudo-random measurements by sparsity-promoting nonlinear recovery algorithms. Therefore, the original signal can be significantly reduced. To achieve the sparse representation of SAR signal, was done a curvelet transform. The curvelets constitute a directional frame, which allows an optimal sparse representation of objects with discontinuities along smooth curves as observed in raw data and provides an advanced denoising optimization. For the tests were made available a scene of 8192 x 2048 samples in range and azimuth in X-band with 2 m of resolution. The sparse representation was compressed using low dimension measurements matrices in each curvelet subband. Thus, an iterative CS reconstruction method based on IST (iterative soft/shrinkage threshold) was adjusted to recover the curvelets coefficients and then the original signal. To evaluate the compression performance were computed the compression ratio (CR), signal to noise ratio (SNR), and because the interferometry applications require more reconstruction accuracy the phase parameters like the standard deviation of the phase (PSD) and the mean phase error (MPE) were also computed. Moreover, in the image domain, a single-look complex image was generated to evaluate the compression effects. All results were computed in terms of sparsity analysis to provides an efficient compression and quality recovering appropriated for inSAR applications

  16. Tropical forest plantation biomass estimation using RADARSAT-SAR and TM data of south china

    Science.gov (United States)

    Wang, Chenli; Niu, Zheng; Gu, Xiaoping; Guo, Zhixing; Cong, Pifu

    2005-10-01

    Forest biomass is one of the most important parameters for global carbon stock model yet can only be estimated with great uncertainties. Remote sensing, especially SAR data can offers the possibility of providing relatively accurate forest biomass estimations at a lower cost than inventory in study tropical forest. The goal of this research was to compare the sensitivity of forest biomass to Landsat TM and RADARSAT-SAR data and to assess the efficiency of NDVI, EVI and other vegetation indices in study forest biomass based on the field survey date and GIS in south china. Based on vegetation indices and factor analysis, multiple regression and neural networks were developed for biomass estimation for each species of the plantation. For each species, the better relationships between the biomass predicted and that measured from field survey was obtained with a neural network developed for the species. The relationship between predicted and measured biomass derived from vegetation indices differed between species. This study concludes that single band and many vegetation indices are weakly correlated with selected forest biomass. RADARSAT-SAR Backscatter coefficient has a relatively good logarithmic correlation with forest biomass, but neither TM spectral bands nor vegetation indices alone are sufficient to establish an efficient model for biomass estimation due to the saturation of bands and vegetation indices, multiple regression models that consist of spectral and environment variables improve biomass estimation performance. Comparing with TM, a relatively well estimation result can be achieved by RADARSAT-SAR, but all had limitations in tropical forest biomass estimation. The estimation results obtained are not accurate enough for forest management purposes at the forest stand level. However, the approximate volume estimates derived by the method can be useful in areas where no other forest information is available. Therefore, this paper provides a better

  17. VenSAR on EnVision: Taking earth observation radar to Venus

    Science.gov (United States)

    Ghail, Richard C.; Hall, David; Mason, Philippa J.; Herrick, Robert R.; Carter, Lynn M.; Williams, Ed

    2018-02-01

    Venus should be the most Earth-like of all our planetary neighbours: its size, bulk composition and distance from the Sun are very similar to those of Earth. How and why did it all go wrong for Venus? What lessons can be learned about the life story of terrestrial planets in general, in this era of discovery of Earth-like exoplanets? Were the radically different evolutionary paths of Earth and Venus driven solely by distance from the Sun, or do internal dynamics, geological activity, volcanic outgassing and weathering also play an important part? EnVision is a proposed ESA Medium class mission designed to take Earth Observation technology to Venus to measure its current rate of geological activity, determine its geological history, and the origin and maintenance of its hostile atmosphere, to understand how Venus and Earth could have evolved so differently. EnVision will carry three instruments: the Venus Emission Mapper (VEM); the Subsurface Radar Sounder (SRS); and VenSAR, a world-leading European phased array synthetic aperture radar that is the subject of this article. VenSAR will obtain images at a range of spatial resolutions from 30 m regional coverage to 1 m images of selected areas; an improvement of two orders of magnitude on Magellan images; measure topography at 15 m resolution vertical and 60 m spatially from stereo and InSAR data; detect cm-scale change through differential InSAR, to characterise volcanic and tectonic activity, and estimate rates of weathering and surface alteration; and characterise of surface mechanical properties and weathering through multi-polar radar data. These data will be directly comparable with Earth Observation radar data, giving geoscientists unique access to an Earth-sized planet that has evolved on a radically different path to our own, offering new insights on the Earth-sized exoplanets across the galaxy.

  18. SAR China Land Mapping Project: Development, Production and Potential Applications

    International Nuclear Information System (INIS)

    Zhang, Lu; Guo, Huadong; Liu, Guang; Fu, Wenxue; Yan, Shiyong; Song, Rui; Ji, Peng; Wang, Xinyuan

    2014-01-01

    Large-area, seamless synthetic aperture radar (SAR) mosaics can reflect overall environmental conditions and highlight general trends in observed areas from a macroscopic standpoint, and effectively support research at the global scale, which is in high demand now across scientific fields. The SAR China Land Mapping Project (SCLM), supported by the Digital Earth Science Platform Project initiated and managed by the Center for Earth Observation and Digital Earth, Chinese Academy of Sciences (CEODE), is introduced in this paper. This project produced a large-area SAR mosaic dataset and generated the first complete seamless SAR map covering the entire land area of China using EnviSat-ASAR images. The value of the mosaic map is demonstrated by some potential applications in studies of urban distribution, rivers and lakes, geologic structures, geomorphology and paleoenvironmental change

  19. Vegetation Parameter Extraction Using Dual Baseline Polarimetric SAR Interferometry Data

    Science.gov (United States)

    Zhang, H.; Wang, C.; Chen, X.; Tang, Y.

    2009-04-01

    For vegetation parameter inversion, the single baseline polarimetric SAR interferometry (POLinSAR) technique, such as the three-stage method and the ESPRIT algorithm, is limited by the observed data with the minimum ground to volume amplitude ration, which effects the estimation of the effective phase center for the vegetation canopy or the surface, and thus results in the underestimated vegetation height. In order to remove this effect of the single baseline inversion techniques in some extend, another baseline POLinSAR data is added on vegetation parameter estimation in this paper, and a dual baseline POLinSAR technique for the extraction of the vegetation parameter is investigated and improved to reduce the dynamic bias for the vegetation parameter estimation. Finally, the simulated data and real data are used to validate this dual baseline technique.

  20. Environmental/Noise Effects on VHF/UHF UWB SAR

    National Research Council Canada - National Science Library

    Ralston, James

    1998-01-01

    This paper presents a straightforward approach to estimating the impact of natural environmental noise on an overall system noise temperature for very high frequency/ultrahigh frequency synthetic aperture radar (VHF/UHF SAR...

  1. Eutelsat 2: SAR-10009 nickel-hydrogen battery

    Science.gov (United States)

    Miller, Lee

    1991-01-01

    The topics are presented in viewgraph form and include SAR-10009 design features, specific energy, analyses and testing, redundant structural insulation, electronics, corrosion protection, battery cell life cycle tests, and spacecraft launches.

  2. The economic impact of SARS in Beijing, China.

    Science.gov (United States)

    Beutels, Philippe; Jia, Na; Zhou, Qing-Yi; Smith, Richard; Cao, Wu-Chun; de Vlas, Sake J

    2009-11-01

    To document the impact of the severe acute respiratory syndrome (SARS) outbreak in Beijing on indicators of social and economic activity. Associations between time series of daily and monthly SARS cases and deaths and volume of public train, airplane and cargo transport, tourism, household consumption patterns and gross domestic product growth in Beijing were investigated using the cross-correlation function. Significant correlation coefficients were found for all indicators except wholesale accounts and expenditures on necessities, with the most significant correlations occurring with a delay of 1 day to 1 month. Especially leisure activities, local and international transport and tourism were affected by SARS particularly in May 2003. Much of this consumption was merely postponed; but irrecoverable losses to the tourist sector alone were estimated at about US$ 1.4 bn, or 300 times the cost of treatment for SARS cases in Beijing.

  3. RAMP AMM-1 SAR Image Mosaic of Antarctica

    Data.gov (United States)

    National Aeronautics and Space Administration — In 1997, the Canadian RADARSAT-1 satellite was rotated in orbit so that its Synthetic Aperture Radar (SAR) antenna looked south towards Antarctica. This permitted...

  4. Wavelet Filter Banks for Super-Resolution SAR Imaging

    Science.gov (United States)

    Sheybani, Ehsan O.; Deshpande, Manohar; Memarsadeghi, Nargess

    2011-01-01

    This paper discusses Innovative wavelet-based filter banks designed to enhance the analysis of super resolution Synthetic Aperture Radar (SAR) images using parametric spectral methods and signal classification algorithms, SAR finds applications In many of NASA's earth science fields such as deformation, ecosystem structure, and dynamics of Ice, snow and cold land processes, and surface water and ocean topography. Traditionally, standard methods such as Fast-Fourier Transform (FFT) and Inverse Fast-Fourier Transform (IFFT) have been used to extract Images from SAR radar data, Due to non-parametric features of these methods and their resolution limitations and observation time dependence, use of spectral estimation and signal pre- and post-processing techniques based on wavelets to process SAR radar data has been proposed. Multi-resolution wavelet transforms and advanced spectral estimation techniques have proven to offer efficient solutions to this problem.

  5. A Stepped Frequency CW SAR for Lightweight UAV Operation

    National Research Council Canada - National Science Library

    Morrison, Keith

    2005-01-01

    A stepped-frequency continuous wave (SF-CW) synthetic aperture radar (SAR), with frequency-agile waveforms and real-time intelligent signal processing algorithms, is proposed for operation from a lightweight UAV platform...

  6. Methodology of dose calculation for the SRS SAR

    International Nuclear Information System (INIS)

    Price, J.B.

    1991-07-01

    The Savannah River Site (SRS) Safety Analysis Report (SAR) covering K reactor operation assesses a spectrum of design basis accidents. The assessment includes estimation of the dose consequences from the analyzed accidents. This report discusses the methodology used to perform the dose analysis reported in the SAR and also includes the quantified doses. Doses resulting from postulated design basis reactor accidents in Chapter 15 of the SAR are discussed, as well as an accident in which three percent of the fuel melts. Doses are reported for both atmospheric and aqueous releases. The methodology used to calculate doses from these accidents as reported in the SAR is consistent with NRC guidelines and industry standards. The doses from the design basis accidents for the SRS reactors are below the limits set for commercial reactors by the NRC and also meet industry criteria. A summary of doses for various postulated accidents is provided

  7. Stellwagen Bank National Marine Sanctuary - Synthetic Aperture Radar (SAR) Imagery

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This geodatabase contains Synthetic Aperture Radar images (SAR), which consist of a fine resolution (12.5-50m), two-dimensional radar backscatter map of the...

  8. Massachusetts Bay - Internal wave packets digitized from SAR imagery

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — This feature class contains internal wave packets digitized from SAR imagery at 1:350,000 scale in Massachusetts Bay. Internal waves are nonsinusoidal waves that...

  9. Comparison between SAR Soil Moisture Estimates and Hydrological Model Simulations over the Scrivia Test Site

    Directory of Open Access Journals (Sweden)

    Alberto Pistocchi

    2013-10-01

    Full Text Available In this paper, the results of a comparison between the soil moisture content (SMC estimated from C-band SAR, the SMC simulated by a hydrological model, and the SMC measured on ground are presented. The study was carried out in an agricultural test site located in North-west Italy, in the Scrivia river basin. The hydrological model used for the simulations consists of a one-layer soil water balance model, which was found to be able to partially reproduce the soil moisture variability, retaining at the same time simplicity and effectiveness in describing the topsoil. SMC estimates were derived from the application of a retrieval algorithm, based on an Artificial Neural Network approach, to a time series of ENVISAT/ASAR images acquired over the Scrivia test site. The core of the algorithm was represented by a set of ANNs able to deal with the different SAR configurations in terms of polarizations and available ancillary data. In case of crop covered soils, the effect of vegetation was accounted for using NDVI information, or, if available, for the cross-polarized channel. The algorithm results showed some ability in retrieving SMC with RMSE generally <0.04 m3/m3 and very low bias (i.e., <0.01 m3/m3, except for the case of VV polarized SAR images: in this case, the obtained RMSE was somewhat higher than 0.04 m3/m3 (≤0.058 m3/m3. The algorithm was implemented within the framework of an ESA project concerning the development of an operative algorithm for the SMC retrieval from Sentinel-1 data. The algorithm should take into account the GMES requirements of SMC accuracy (≤5% in volume, spatial resolution (≤1 km and timeliness (3 h from observation. The SMC estimated by the SAR algorithm, the SMC estimated by the hydrological model, and the SMC measured on ground were found to be in good agreement. The hydrological model simulations were performed at two soil depths: 30 and 5 cm and showed that the 30 cm simulations indicated, as expected, SMC

  10. Significant Wave Height under Hurricane Irma derived from SAR Sentinel-1 Data

    Science.gov (United States)

    Lehner, S.; Pleskachevsky, A.; Soloviev, A.; Fujimura, A.

    2017-12-01

    The 2017 Atlantic hurricane season was with three major hurricanes a particular active one. The Category 4 hurricane Irma made landfall on the Florida Keys on September 10th 2017 and was imaged several times by ESAs Sentinel-1 satellites in C-band and the TerraSAR-X satellite in X-band. The high resolution TerraSAR-X imagery showed the footprint of individual tornadoes on the sea surface together with their turbulent wake imaged as a dark line due to increased turbulence. The water-cloud structures of the tornadoes are analyzed and their sea surface structure is compared to optical and IR cloud imagery. An estimate of the wind field using standard XMOD algorithms is provided, although saturating under the strong rain and high wind speed conditions. Imaging the hurricanes by space radar gives the opportunity to observe the sea surface and thus measure the wind field and the sea state under hurricane conditions through the clouds even in this severe weather, although rain features, which are usually not observed in SAR become visible due to damping effects. The Copernicus Sentinel-1 A and B satellites, which are operating in C-band provided several images of the sea surface under hurricane Irma, Jose and Maria. The data were acquired daily and converted into measurements of sea surface wind field u10 and significant wave height Hs over a swath width of 280km about 1000 km along the orbit. The wind field of the hurricanes as derived by CMOD is provided by NOAA operationally on their web server. In the hurricane cases though the wind speed saturates at 20 m/sec and is thus too low in the area of hurricane wind speed. The technique to derive significant wave height is new though and does not show any calibration issues. This technique provides for the first time measurements of the areal coverage and distribution of the ocean wave height as caused by a hurricane on SAR wide swath images. Wave heights up to 10 m were measured under the forward quadrant of the hurricane

  11. Change detection in polarimetric SAR data over several time points

    DEFF Research Database (Denmark)

    Conradsen, Knut; Nielsen, Allan Aasbjerg; Skriver, Henning

    2014-01-01

    A test statistic for the equality of several variance-covariance matrices following the complex Wishart distribution is introduced. The test statistic is applied successfully to detect change in C-band EMISAR polarimetric SAR data over four time points.......A test statistic for the equality of several variance-covariance matrices following the complex Wishart distribution is introduced. The test statistic is applied successfully to detect change in C-band EMISAR polarimetric SAR data over four time points....

  12. AUTOMATIC COREGISTRATION FOR MULTIVIEW SAR IMAGES IN URBAN AREAS

    Directory of Open Access Journals (Sweden)

    Y. Xiang

    2017-09-01

    Full Text Available Due to the high resolution property and the side-looking mechanism of SAR sensors, complex buildings structures make the registration of SAR images in urban areas becomes very hard. In order to solve the problem, an automatic and robust coregistration approach for multiview high resolution SAR images is proposed in the paper, which consists of three main modules. First, both the reference image and the sensed image are segmented into two parts, urban areas and nonurban areas. Urban areas caused by double or multiple scattering in a SAR image have a tendency to show higher local mean and local variance values compared with general homogeneous regions due to the complex structural information. Based on this criterion, building areas are extracted. After obtaining the target regions, L-shape structures are detected using the SAR phase congruency model and Hough transform. The double bounce scatterings formed by wall and ground are shown as strong L- or T-shapes, which are usually taken as the most reliable indicator for building detection. According to the assumption that buildings are rectangular and flat models, planimetric buildings are delineated using the L-shapes, then the reconstructed target areas are obtained. For the orignal areas and the reconstructed target areas, the SAR-SIFT matching algorithm is implemented. Finally, correct corresponding points are extracted by the fast sample consensus (FSC and the transformation model is also derived. The experimental results on a pair of multiview TerraSAR images with 1-m resolution show that the proposed approach gives a robust and precise registration performance, compared with the orignal SAR-SIFT method.

  13. Automatic Coregistration for Multiview SAR Images in Urban Areas

    Science.gov (United States)

    Xiang, Y.; Kang, W.; Wang, F.; You, H.

    2017-09-01

    Due to the high resolution property and the side-looking mechanism of SAR sensors, complex buildings structures make the registration of SAR images in urban areas becomes very hard. In order to solve the problem, an automatic and robust coregistration approach for multiview high resolution SAR images is proposed in the paper, which consists of three main modules. First, both the reference image and the sensed image are segmented into two parts, urban areas and nonurban areas. Urban areas caused by double or multiple scattering in a SAR image have a tendency to show higher local mean and local variance values compared with general homogeneous regions due to the complex structural information. Based on this criterion, building areas are extracted. After obtaining the target regions, L-shape structures are detected using the SAR phase congruency model and Hough transform. The double bounce scatterings formed by wall and ground are shown as strong L- or T-shapes, which are usually taken as the most reliable indicator for building detection. According to the assumption that buildings are rectangular and flat models, planimetric buildings are delineated using the L-shapes, then the reconstructed target areas are obtained. For the orignal areas and the reconstructed target areas, the SAR-SIFT matching algorithm is implemented. Finally, correct corresponding points are extracted by the fast sample consensus (FSC) and the transformation model is also derived. The experimental results on a pair of multiview TerraSAR images with 1-m resolution show that the proposed approach gives a robust and precise registration performance, compared with the orignal SAR-SIFT method.

  14. Comparing satellite SAR and wind farm wake models

    DEFF Research Database (Denmark)

    Hasager, Charlotte Bay; Vincent, P.; Husson, R.

    2015-01-01

    . These extend several tens of kilometres downwind e.g. 70 km. Other SAR wind maps show near-field fine scale details of wake behind rows of turbines. The satellite SAR wind farm wake cases are modelled by different wind farm wake models including the PARK microscale model, the Weather Research and Forecasting...... (WRF) model in high resolution and WRF with coupled microscale parametrization....

  15. Pulse-based internal calibration of polarimetric SAR

    DEFF Research Database (Denmark)

    Dall, Jørgen; Skou, Niels; Christensen, Erik Lintz

    1994-01-01

    Internal calibration greatly diminishes the dependence on calibration target deployment compared to external calibration. Therefore the Electromagnetics Institute (EMI) at the Technical University of Denmark (TUD) has equipped its polarimetric SAR, EMISAR, with several calibration loops and devel......Internal calibration greatly diminishes the dependence on calibration target deployment compared to external calibration. Therefore the Electromagnetics Institute (EMI) at the Technical University of Denmark (TUD) has equipped its polarimetric SAR, EMISAR, with several calibration loops...

  16. Literature-Related Discovery: Potential Treatments and Preventives for SARS

    Science.gov (United States)

    2010-01-01

    We recently demonstrated that kefir modulates the immune response in mice, increasing the number of IgA+ cells in the intestinal and bronchial...retrieval and analysis of the core SARS literature and literatures related directly to the core SARS literature (e.g., immune system component literatures...According to recent reviews of the pandemic, none of the drugs worked. Those who recovered did so by natural means; their immune systems were

  17. SAR image formation with azimuth interpolation after azimuth transform

    Science.gov (United States)

    Doerry,; Armin W. , Martin; Grant D. , Holzrichter; Michael, W [Albuquerque, NM

    2008-07-08

    Two-dimensional SAR data can be processed into a rectangular grid format by subjecting the SAR data to a Fourier transform operation, and thereafter to a corresponding interpolation operation. Because the interpolation operation follows the Fourier transform operation, the interpolation operation can be simplified, and the effect of interpolation errors can be diminished. This provides for the possibility of both reducing the re-grid processing time, and improving the image quality.

  18. Nano(Q)SAR: Challenges, pitfalls and perspectives.

    Science.gov (United States)

    Tantra, Ratna; Oksel, Ceyda; Puzyn, Tomasz; Wang, Jian; Robinson, Kenneth N; Wang, Xue Z; Ma, Cai Y; Wilkins, Terry

    2015-01-01

    Regulation for nanomaterials is urgently needed, and the drive to adopt an intelligent testing strategy is evident. Such a strategy will not only provide economic benefits but will also reduce moral and ethical concerns arising from animal testing. For regulatory purposes, such an approach is promoted by REACH, particularly the use of quantitative structure-activity relationships [(Q)SAR] as a tool for the categorisation of compounds according to their physicochemical and toxicological properties. In addition to compounds, (Q)SAR has also been applied to nanomaterials in the form of nano(Q)SAR. Although (Q)SAR in chemicals is well established, nano(Q)SAR is still in early stages of development and its successful uptake is far from reality. This article aims to identify some of the pitfalls and challenges associated with nano-(Q)SARs in relation to the categorisation of nanomaterials. Our findings show clear gaps in the research framework that must be addressed if we are to have reliable predictions from such models. Three major barriers were identified: the need to improve quality of experimental data in which the models are developed from, the need to have practical guidelines for the development of the nano(Q)SAR models and the need to standardise and harmonise activities for the purpose of regulation. Of these three, the first, i.e. the need to improve data quality requires immediate attention, as it underpins activities associated with the latter two. It should be noted that the usefulness of data in the context of nano-(Q)SAR modelling is not only about the quantity of data but also about the quality, consistency and accessibility of those data.

  19. Ground Subsidence over Beijing-Tianjin-Hebei Region during Three Periods of 1992 to 2014 Monitored by Interferometric SAR

    Directory of Open Access Journals (Sweden)

    ZHANG Yonghong

    2016-09-01

    Full Text Available The Beijing-Tianjin-Hebei region suffers the most serious ground subsidence in China, which has caused huge economic losses every year. Therefore, ground subsidence was listed as an important mission in the project of geographic conditions monitoring over Beijing-Tianjin-Hebei launched by the National Administration of Surveying, Mapping and Geoinformation in 2013. In this paper, we propose a methodology of ground subsidence monitoring over wide area, which is entitled "multiple master-image coherent target small-baseline interferometric SAR (MCTSB-InSAR". MCTSB-InSAR is an improved time series InSAR technique with some unique features. SAR datasets used for ground subsidence monitoring over the Beijing-Tianjin-Hebei region include ERS-1/2 SAR images acquired between 1992 to 2000, ENVISAT ASAR images acquired between 2003 to 2010 and RADARSAT-2 images acquired between 2012 to 2014. This research represents a first ever effort on mapping ground subsidence over Beijing-Tianjin-Hebei region and over such as a long time span in China. In comparison with more than 120 leveling measurements collected in Beijing and Tianjin, the derived subsidence velocity has the accuracy of 8.7mm/year (1992—2000, 4.7mm/year (2003—2010, and 5.4mm/year (2012—2014 respectively. The spatial-temporal characteristics of the development of ground subsidence in Beijing and Tianjin are analyzed. In general, ground subsidence in Beijing kept continuously expanding in the period of 1992 to 2014. While, ground subsidence in Tianjin had already been serious in 1990s, had dramatically expanded during 2000s, and started to alleviate in recent years. The monitoring result is of high significance for prevention and mitigation of ground subsidence disaster, for making development plan, for efficient and effective utilization of water resource, and for adjustment of economic framework of this region. The result also indicates the effectiveness and reliability of the MCTSB-InSAR