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Sample records for sardinops sagax caerulea

  1. Anchovy Engraulis capensis and sardine Sardinops sagax currently ...

    African Journals Online (AJOL)

    spamer

    within-season variability in factors affecting sardine Sardinops sagax and anchovy Engraulis capensis recruitment. .... variogram. ... formerly SF, unpublished data) were based on length ..... the front offshore, along with many eggs and larvae.

  2. Worldwide, where anchovies Engraulis spp. and sardine Sardinops ...

    African Journals Online (AJOL)

    spamer

    sardine Sardinops sagax co-occur, the two species alternate in ... the west coasts of South America and southern Africa, ... of extinction in the wild within 100 years (Croxall et al. 1996) ..... able to penguins year-round, compared to the seasonal.

  3. Traditionally, sardine Sardinops sagax has been the backbone of ...

    African Journals Online (AJOL)

    denise

    Grant Program, San Diego, California, USA, in cooperation with Centro de Investigaciones ... maturity of Baltic cod (Gadus morhua) during a period of large variations in stock .... Trudy– AtlantNIRO 73: 77–85 (in Russian). ROCHET, M. J. 1998 ...

  4. Although South African sardine (or pilchard, Sardinops sagax) were ...

    African Journals Online (AJOL)

    spamer

    (iii) as anchovy and sardine frequently shoal together during their first ... Fishery Resources Division, Food and Agricultural Organization, Via delle Terme di Caracalla 00100, Rome, Italy. ...... risk and “scope for growth” as performance criteria.

  5. Anchovy Engraulis capensis, sardine Sardinops sagax and round ...

    African Journals Online (AJOL)

    spamer

    all years in the recruitment time-series from 1985 to. 1994. ... Forecasts of anchovy recruitment from multiple cruises may produce a different result from the forecast ... abundance, phyto- and zooplankton biomass, copepod ...... estuarine lake.

  6. The southern African sardine Sardinops sagax (also known as ...

    African Journals Online (AJOL)

    denise

    mental factors that affect stock dynamics primarily through recruitment, and .... school-groups contributed an increasing proportion ..... of a recovery in the stock in the early 1990s were not ..... must strive to promote a healthy spawning stock,.

  7. The southern African sardine Sardinops sagax supports major purse ...

    African Journals Online (AJOL)

    spamer

    Echo-Integrator post-processing system (Foote et al. 1991). ... noise-reduction filters at weak, and with frequency ..... approach based on acoustic image simulation. Aquat. ... GERLOTTO, F., SORIA, M. and P. FRÉON 1999 — From 2D to.

  8. Flavanonas preniladas de dalea caerulea

    Directory of Open Access Journals (Sweden)

    Alba Isabel Arango

    2010-07-01

    Full Text Available Los compuestos: 5.7-dihidroxi-8-pTenilflavanona; 5,7-dihidr(xi-6-metil-8-brenilflavanoa; 5,7-dihidroxi-6-prenilflavanona; y 5-hidroxi-7-metoxi-8-prenilflavanona fueron aislados por CC guiados por bioeasayos de toxicidad con Artemia salina a partir del extracto en éter de petróleo de la parte aérea de Dalea caerulea e identificados por espectroscopias IR, UV, 'HRMN, "CRMN, y EM. Las flavanonas en estado puro no dieron actividad significativa al bioensayo de toxicidad.

  9. 2012 Joint U.S.-Canada Integrated Acoustic and Trawl Survey of Pacific Hake (Merluccius productus) and Pacific Sardine (Sardinops sagax) (SH1204, EK60)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Scientists from the Fishery Resource Analysis and Monitoring (FRAM) division at the NOAA Fisheries Northwest Fisheries Science Center (NWFSC), the Fishery Resources...

  10. The 2012 Joint U.S.-Canada Integrated Acoustic and Trawl Survey of Pacific Hake (Merluccius productus) and Pacific Sardine (Sardinops sagax) (SH1204, ME70)

    Data.gov (United States)

    National Oceanic and Atmospheric Administration, Department of Commerce — Scientists from the Fishery Resource Analysis and Monitoring (FRAM) division at the NOAA Fisheries Northwest Fisheries Science Center (NWFSC), the Fishery Resources...

  11. Melissa officinalis and Passiflora caerulea infusion as physiological stress decreaser

    National Research Council Canada - National Science Library

    Feliú-Hemmelmann, Karina; Monsalve, Francisco; Rivera, César

    2013-01-01

    The objective of this study was to determine the effect of a Melissa officinalis and Passiflora caerulea infusion on the severity of physiological chronic stress induced by movement restriction in CF-1 mice...

  12. Melissa officinalis and Passiflora caerulea infusion as physiological stress decreaser.

    Science.gov (United States)

    Feliú-Hemmelmann, Karina; Monsalve, Francisco; Rivera, César

    2013-01-01

    The objective of this study was to determine the effect of a Melissa officinalis and Passiflora caerulea infusion on the severity of physiological chronic stress induced by movement restriction in CF-1 mice. 40 CF-1 male mice, six weeks of age, were divided into 4 groups (n = 10 for each group): (1) Group RS/MP received two treatments, induced stress through movement restriction and a infusion of Melissa officinalis and Passiflora caerulea in a dose of 200 mg/kg, (2) RS group with induced stress using movement restriction, (3) MP group, which received only a infusion, and (4) a CONTROL group that received no treatment. The severity of the stress was obtained by analysis of the physical parameters of body weight, thymus and spleen, and associated biomarkers with stress, corticosterone, and glucose. Animals that consumed Melissa officinalis and Passiflora caerulea infusion had lower plasma corticosterone levels (Student's t test, Welch, p = 0.05), which is the most important biomarker associated with physiological stress, demonstrating a phytotherapy effect.

  13. Dinámica poblacional de la sardina del pacifico Sardinops sagax (Jenyns 1842) (clupeiformes: clupeidae), en la costa oeste de la península de Baja California y el sur de California

    OpenAIRE

    Félix Uraga, Roberto

    2006-01-01

    Tres stocks de sardina del Pacífico fueron identificados utilizando datos mensuales de captura y temperatura superficial del mar de Bahía Magdalena, Isla Cedros y Ensenada en México, y San Pedro en EUA. Un stock parece estar adaptado a temperaturas mayores de 22 ºC (stock cálido), otro a temperaturas entre 17-22 ºC (stock templado) y el tercero a temperaturas menores de 17 ºC (stock frío). Se elaboró un modelo conceptual para describir la distribución espacio temporal de est...

  14. Comparison of polyphenol, anthocyanin and antioxidant capacity in four varieties of Lonicera caerulea berry extracts.

    Science.gov (United States)

    Wang, Yuehua; Zhu, Jinyan; Meng, Xianjun; Liu, Suwen; Mu, Jingjing; Ning, Chong

    2016-04-15

    Four varieties of Lonicera caerulea berries--'Wild', 'Beilei', 'No. 1', and 'No. 2'--were compared with respect to extraction yield, fruit weight, total soluble solids, polyphenol and anthocyanin contents, oxygen radical absorbance capacity (ORAC), and anthocyanin composition. Sixteen individual anthocyanins were identified in the selected varieties. Acylated anthocyanins, cyanidin 3-acetylhexoside and peonidin 3-acetylhexoside, were identified in L. caerulea berries for the first time. Cyanidin-3-glucoside was the most prominent anthocyanin in all four tested varieties. Wild type of L. caerulea fruit ('Wild'), with the highest polyphenol content, contained 14 anthocyanins and the highest ORAC value. Eleven anthocyanins were found in 'Beilei' berries, which had a higher ORAC value than 'No. 1' and 'No. 2'. The highest total soluble solid content and extraction yield were found in 'No. 2' and 'Wild' berries, respectively.

  15. Mechanisms of purple moor-grass (Molinia caerulea) encroachment in dry heathland ecosystems with chronic nitrogen inputs

    Energy Technology Data Exchange (ETDEWEB)

    Friedrich, Uta, E-mail: uta.friedrich@leuphana.de [Institute of Ecology, University of Lueneburg, Scharnhorststr. 1, 21335 Lueneburg (Germany); Oheimb, Goddert von, E-mail: vonoheimb@uni-lueneburg.de [Institute of Ecology, University of Lueneburg, Scharnhorststr. 1, 21335 Lueneburg (Germany); Dziedek, Christoph, E-mail: dziedek@leuphana.de [Institute of Ecology, University of Lueneburg, Scharnhorststr. 1, 21335 Lueneburg (Germany); Kriebitzsch, Wolf-Ulrich, E-mail: wolf.kriebitzsch@vti.bund.de [Institute for World Forestry, Johann Heinrich von Thuenen Institute (vTI), Federal Research Institute for Rural Areas, Forestry and Fisheries, Leuschnerstrasse 91, 21031 Hamburg (Germany); Selbmann, Katharina, E-mail: katharina_selbmann@web.de [Institute of Ecology, University of Lueneburg, Scharnhorststr. 1, 21335 Lueneburg (Germany); Haerdtle, Werner, E-mail: haerdtle@uni-lueneburg.de [Institute of Ecology, University of Lueneburg, Scharnhorststr. 1, 21335 Lueneburg (Germany)

    2011-12-15

    We analysed growth strategies (biomass allocation, nutrient sequestration and allocation) of heather (Calluna vulgaris) and purple moor-grass (Molinia caerulea) seedlings in monocultures and mixtures in relation to N, P, and N + P fertilisation in a greenhouse experiment in order to simulate a heath's pioneer phase under high airborne nitrogen (N) loads. N fertilisation increased the total biomass of both species in monocultures. In mixtures, M. caerulea sequestered about 65% of the N applied, while C. vulgaris suffered from N shortage (halving of the total biomass). Thus, in mixtures only M. caerulea will benefit from airborne N loads, and competition will become increasingly asymmetric with increasing N availability. Our results demonstrate that the heath's pioneer phase is the crucial tipping point at which the competitive vigour of M. caerulea (high belowground allocation, efficient use of belowground resources, shortened reproductive cycles) induces a shift to dominance of grasses under increased N availability. - Highlights: > M. caerulea seedlings sequestered about 65% of the N applied in mixtures. > M. caerulea seedlings stronger respond to N fertilisation than older plants do. > C. vulgaris seedlings halved their biomass in mixtures as a result of N shortage. > In mixtures, only M. caerulea will benefit from airborne N loads. - The present study indicates that the heath's pioneer phase is the crucial tipping point at which a shift to dominance of purple moor-grass occurs under increased N availability.

  16. Ploidy distribution and DNA content variations of Lonicera caerulea (Caprifoliaceae) in Japan

    OpenAIRE

    Miyashita, Tomomi; ARAKI, Hajime; Hoshino, Yoichiro

    2011-01-01

    Ploidy level and geographical distribution were investigated in Japanese Lonicera caerulea L. Flow cytometric analysis revealed the presence of DNA diploid and DNA tetraploid plants in Japan. Chromosome observation confirmed that diploid and tetraploid plants showed 2n = 2x = 18 and 2n = 4x = 36, respectively. The DNA diploid populations were found only in lowland mires, Betsukai, Bekanbeushi, Kushiro and Kiritappu located in eastern Hokkaido. On the other hand, DNA tetraploid populations wer...

  17. Constant harvest rate for the Pacific sardine (Sardinops caeruleus) fishery in the Gulf of California based on catchability-at-length estimations

    OpenAIRE

    2009-01-01

    Constant harvest rate as a management strategy for the Pacific sardine (Sardinops caeruleus) fishery in the Gulf of California is supported by an analysis of variations in the catchability coefficient (q), stock abundance and commercial catch. Catchability was analyzed based on population length-structured data standard length (SL), expressed as CPUE, for 26 fishing seasons (1972-1973 to 1997-1998). We used a deterministic model of catchability to estimate the catchability-at-length assuming ...

  18. Microfungi in Drinking Water: The Role of the Frog Litoria caerulea

    Directory of Open Access Journals (Sweden)

    Larelle D. Fabbro

    2010-08-01

    Full Text Available Microfungi were recovered from all parts of a municipal water distribution system in sub-tropical Australia even though virtually no colony-forming units were recovered from the treated water as it left the treatment plant. A study was then undertaken to determine the potential sources of the microfungal population in the distribution system. Observation of frogs (Litoria caerulea using the internal infrastructure of a reservoir as diurnal sleeping places, together with observation of visible microfungal growth on their faecal pellets, led to an investigation of the possible involvement of this animal. Old faecal pellets were collected and sporulating fungal colonies growing on their surfaces were identified. Fresh faecal pellets were collected and analysed for microfungal content, and skin swabs were analysed for yeasts. It was found that the faeces and skin of L. caerulea carried large numbers of yeasts as well as spores of various filamentous fungal genera. While there are many possible sources of microfungal contamination of municipal drinking water supplies, this study has revealed that the Australian green tree frog L. caerulea is one of the important sources of filamentous microfungi and yeasts in water storage reservoirs in sub-tropical Australia where the animal is endemic.

  19. Chloramphenicol with fluid and electrolyte therapy cures terminally ill green tree frogs (Litoria caerulea) with chytridiomycosis.

    Science.gov (United States)

    Young, Sam; Speare, Rick; Berger, Lee; Skerratt, Lee F

    2012-06-01

    Terminal changes in frogs infected with the amphibian fungal pathogen Batrachochytrium dendrobatidis (Bd) include epidermal degeneration leading to inhibited epidermal electrolyte transport, systemic electrolyte disturbances, and asystolic cardiac arrest. There are few reports of successful treatment of chytridiomycosis and none that include curing amphibians with severe disease. Three terminally ill green tree frogs (Litoria caerulea) with heavy Bd infections were cured using a combination of continuous shallow immersion in 20 mg/L chloramphenicol solution for 14 days, parenteral isotonic electrolyte fluid therapy for 6 days, and increased ambient temperature to 28 degrees C for 14 days. All terminally ill frogs recovered rapidly to normal activity levels and appetite within 5 days of commencing treatment. In contrast, five untreated terminally ill L. caerulea with heavy Bd infections died within 24-48 hr of becoming moribund. Subclinical infections in 15 experimentally infected L. caerulea were cured within 28 days by continuous shallow immersion in 20 mg/L chloramphenicol solution without adverse effects. This is the first known report of a clinical treatment protocol for curing terminally ill Bd-infected frogs.

  20. Mineral elements and essential oil contents of Scutellaria luteo-caerulea Bornm. & Snit.

    Directory of Open Access Journals (Sweden)

    Mohammad Nikbin

    2014-05-01

    Full Text Available Objective: Scutellaria luteo-caerulea Bornm. & Snit. is one of the species of genus Scutellaria, within the family of the Lamiaceae, that is used for immune system stimulation and antibacterial effects in traditional medicine in Iran. The aims of this study were to analyze essential oils and mineral element contents of leaves of  S. luteo-caerulea in flowering stage of development. Materials and Methods: The essential oils were obtained by hydrodistillation of the leaves of S. luteo-caerulea and were analyzed by gas chromatography mass spectrometry (GC/MS. Moreover, microwave digestion with atomic absorption spectrophotometry were used for the mineral elements assay. Results: Ninety-seven constituents were detected. Between them, the major components were trans-caryophyllene (25.4%, D-germacrene (7.9%, and linalool (7.4%. Determination of mineral elements showed that the highest minerals were Ca2+ (65.14±1.95 µg/ml and K+ (64.67±3.10 µg/ml. Conclusion: Presence of different essential oils and rich sources of Ca2+ and K+ candidate this plant as an auxiliary medication in different diseases, but more complementary researches are needed about its potency and side effects.

  1. Numeric syntaxonomical analysis of communities of the Molinia caerulea complex in Southwestern of Ukraine

    Directory of Open Access Journals (Sweden)

    Budzhak Vasyl V.

    2016-12-01

    Full Text Available The aims of the paper are: i to establish the coenotic affinity of each species of the Molinia caerulea complex in the southwest of Ukraine, ii to present the results of a comparative analysis of the syntaxa in which include Molinia, iii to explain possible reasons for the expansion of Molinia caerulea in the studied area. The study area ranges from the basins of the Upper Prut River to the Upper Siret River in Ukraine. To determine the coenotical affinity of the studied species, 134 relevés were analysed. The data analysis was carried out using the Modified TWINSPAN algorithm provided by the JUICE software. Ecological features of the communities were analyzed by means of a DCA-ordination and phytoindication assessment. It was revealed that in the studied region the species of the Molinia caerulea complex are characterized by a relatively wide coenotic and ecological range and that they can be attributed to different communities of 4 vegetation classes: Molinio-Arrhenatheretea (Polygono bistortae-Trisetion flavescentis, Molinion cearuleae, Arrhenatherion elatioris alliances, Festuco-Brometea (Bromion erecti alliance, Mulgedio-Aconitetea (Calamagrostion villosae alliance, Oxycocco-Sphagnetea (Sphagnion magellanici alliance. This paper presents the results of the floristic composition analyses outlines some ecological peculiarities and discusses the conservational values of the identified syntaxa.

  2. Establishment and Optimization of SRAP Amplification System in Lonicara caerulea L.

    Institute of Scientific and Technical Information of China (English)

    SUN Feng; HUO Junwei; QIN Dong

    2011-01-01

    A single factor design was applied to optimize five factors influencing SRAP system, including Taq DNA polymerase, template DNA concentration, dNTPs, primer and Mg2+, each at four levels. The optimal SRAP-PCR system for Lonicera caerulea L. was 20 ktL SRAP-PCR amplification reaction solution containing 2.0 μL 10×PCR buffer, 1.0 U Taq DNA polymerase, 30 ng template DNA, 0.2 mmol·L-1 dNTPs, 2.0 mmol·L-1 Mg2+ and 0.2μmol·L-1 primer. The suitable amplification procedure consisted of an initial denaturation at 94℃ for 5 min; denaturation at 94℃ for 1 min, annealing at 35℃ for 1 rain, extension at 72℃ for 90 s and in total five cycles; denaturation at 94℃ for 1 min, annealing at 50℃ for 1 min, extension at 72℃ for 90 s and in total 35 cycles; extension at 72℃ for 8 rain; preservation at 4℃. The procedures and systems could meet the demand for SRAP amplification of Lonicera caerulea L. and would play an important role in Lonicera caerulea L. germplasm identification and genetic diversity analysis.

  3. Respuesta in vitro de diferentes biotipos y explantos de Passiflora caerulea L.

    Directory of Open Access Journals (Sweden)

    Cecilia Severin

    2011-04-01

    Full Text Available In vitro response of different biotypes and explants of Passiflora caerulea L. RESUMEN Passiflora caerulea L., al igual que otras especies de la familia Passifloraceae, es utilizada en la medicina popular por sus propiedades antiespasmódicas y para el tratamiento de la ansiedad, el insomnio y el nerviosismo. La belleza de sus flores les otorga valor ornamental, mientras que sus frutos son apreciados por su importancia alimenticia. Se evaluó la respuesta in vitro de diferentes explantos y tres biotipos de P. caerulea: Corral de Bustos (provincia de Córdoba, Zavalla (provincia de Santa Fe y Neuquén (provincia de Neuquén. Se utilizaron dos tipos de explantos: entrenudos y segmentos nodales, y como medio de cultivo Murashige y Skoog (1962 (MS, suplementado con vitaminas de Gamborg (1976 y 1 mg/L-1 de benciladenina (BA. Las respuestas fueron diferentes según el genotipo y el explanto. Los entrenudos ubicados tanto horizontal como verticalmente en medio de cultivo generaron callos como única respuesta. El biotipo de Neuquén mostró los mayores porcentajes de segmentos nodales con brotes. A través de estudios histológicos se determinó que en medio de cultivo MS con 1 mg/L-1 de BA, los segmentos nodales de P. caerulea originan brotes a partir de las yemas axilares preformadas y raíces que parten de callos en la base de los mismos. En iguales condiciones, los entrenudos originan callo como única respuesta.  Palabras clave: pasionaria, cultivo in vitro, regeneración.  ABSTRACTAs other species of the Passifloraceae family, Passiflora caerulea L. is used in popular medicine for its antispasmodic properties and as a remedy for anxiety, insomnia and nervousness. It is also highly prized for the ornamental value of its beautiful flowers, as well as for the nutritional importance of its fruits. The in vitro response of different explants and three biotypes of P. caerulea: the Corral de Bustos (Province of Córdoba, the Zavalla (Province of Santa

  4. 6410 Pfeifengraswiesen auf kalkreichem Boden, torfigen und tonig-schluffigen Böden (Molinion caeruleae)

    OpenAIRE

    Jäger, Urs; Frank, Dieter

    2014-01-01

    Planare bis montane Pfeifengraswiesen kommen auf basen- bis kalkreichen sowie sauren, feuchten bzw. wechselfeuchten Standorten vor. Sie sind i.d.R. durch extensive einschürige späte Mahd (Streumahd) auf ungedüngten Standorten entstanden. Die Pfeifengraswiesen entwickeln sich aufgrund ihrer Nährstoffarmut im Gegensatz zu den gedüngten Feuchtwiesen erst spät im Jahr. Es kommt zur Ausbildung eines ausgeprägten Frühjahrsaspektes ohne Dominanz des Gewöhnlichen Pfeifengrases (Molinia caerulea). Oft...

  5. Stomach Chitinase from Japanese Sardine Sardinops melanostictus: Purification, Characterization, and Molecular Cloning of Chitinase Isozymes with a Long Linker.

    Science.gov (United States)

    Kawashima, Satoshi; Ikehata, Hiroki; Tada, Chihiro; Ogino, Tomohiro; Kakizaki, Hiromi; Ikeda, Mana; Fukushima, Hideto; Matsumiya, Masahiro

    2016-01-20

    Fish express two different chitinases, acidic fish chitinase-1 (AFCase-1) and acidic fish chitinase-2 (AFCase-2), in the stomach. AFCase-1 and AFCase-2 have different degradation patterns, as fish efficiently degrade chitin ingested as food. For a comparison with the enzymatic properties and the primary structures of chitinase isozymes obtained previously from the stomach of demersal fish, in this study, we purified chitinase isozymes from the stomach of Japanese sardine Sardinops melanostictus, a surface fish that feeds on plankton, characterized the properties of these isozymes, and cloned the cDNAs encoding chitinases. We also predicted 3D structure models using the primary structures of S. melanostictus stomach chitinases. Two chitinase isozymes, SmeChiA (45 kDa) and SmeChiB (56 kDa), were purified from the stomach of S. melanostictus. Moreover, two cDNAs, SmeChi-1 encoding SmeChiA, and SmeChi-2 encoding SmeChiB were cloned. The linker regions of the deduced amino acid sequences of SmeChi-1 and SmeChi-2 (SmeChi-1 and SmeChi-2) are the longest among the fish stomach chitinases. In the cleavage pattern groups toward short substrates and the phylogenetic tree analysis, SmeChi-1 and SmeChi-2 were classified into AFCase-1 and AFCase-2, respectively. SmeChi-1 and SmeChi-2 had catalytic domains that consisted of a TIM-barrel (β/α)₈-fold structure and a deep substrate-binding cleft. This is the first study showing the 3D structure models of fish stomach chitinases.

  6. Quantification of midkine gene expression in Patella caerulea (Mollusca, Gastropoda) exposed to cadmium

    Science.gov (United States)

    Stillitano, Francesca; Mugelli, Alessandro; Cerbai, Elisabetta; Vanucci, Silvana

    2007-10-01

    The release of cadmium into many coastal areas represents a threat to ecosystems and human health; cadmium is carcinogenic in mammals and in both marine invertebrates and vertebrates. The use of molluscs to assess the ecologic risk associated with contaminants is strongly recommended on account of their ecological role and on their highly conserved control and regulatory pathways that are often homologous to vertebrate systems. We previously identified a midkine family protein in the limpet Patella caerulea; the midkine is a recently discovered cytokines family with unequivocal informative value on repairing injury and neoplastic processes in mammals. Here we report on midkine ( mdk) and α-tubulin ( α-tub) gene expression patterns in P. caerulea exposed to cadmium. Limpets, collected on two occasions from a breakwater at a marina (Tyrrhenian Sea) were exposed to sublethal cadmium concentrations (0.5 and 1 mg l -1 Cd) over a 10-day exposure period. RNA was extracted from the viscera of unexposed and exposed specimens. Real time TaqMan RT-PCR was performed to measure the relative mdk and α-tub gene expression levels. A remarkable mdk over-expression was observed in all exposed animals with respect to unexposed ones; mdk over-expression was significantly higher in both treatments when compared with un-treatment (mean expression levels: 23- and 38-fold, for 0.5 and 1 mg l -1 Cd treatment, respectively; ANOVA, for both P < 0.01). The study also indicates that the mdk up-regulation was significantly Cd-concentration dependent ( P < 0.05). A significant up-regulation of the constitutive α-tub gene was also observed in 1 mg l -1 Cd-treated animals (mean expression level: 4-fold; ANOVA, P < 0.05). In conclusion, these data provide the first evidence paving the way for the use of the midkine as a promising new biomarker of effect in the environment risk assessment policy.

  7. Assessment of genetic diversity in Trigonella foenum-graecum and Trigonella caerulea using ISSR and RAPD markers

    Directory of Open Access Journals (Sweden)

    Ranjekar Prabhakar K

    2004-07-01

    Full Text Available Abstract Background Various species of genus Trigonella are important from medical and culinary aspect. Among these, Trigonella foenum-graecum is commonly grown as a vegetable. This anti-diabetic herb can lower blood glucose and cholesterol levels. Another species, Trigonella caerulea is used as food in the form of young seedlings. This herb is also used in cheese making. However, little is known about the genetic variation present in these species. In this report we describe the use of ISSR and RAPD markers to study genetic diversity in both, Trigonella foenum-graecum and Trigonella caerulea. Results Seventeen accessions of Trigonella foenum-graecum and nine accessions of Trigonella caerulea representing various countries were analyzed using ISSR and RAPD markers. Genetic diversity parameters (average number of alleles per polymorphic locus, percent polymorphism, average heterozygosity and marker index were calculated for ISSR, RAPD and ISSR+RAPD approaches in both the species. Dendrograms were constructed using UPGMA algorithm based on the similarity index values for both Trigonella foenum-graecum and Trigonella caerulea. The UPGMA analysis showed that plants from different geographical regions were distributed in different groups in both the species. In Trigonella foenum-graecum accessions from Pakistan and Afghanistan were grouped together in one cluster but accessions from India and Nepal were grouped together in another cluster. However, in both the species accessions from Turkey did not group together and fell in different clusters. Conclusions Based on genetic similarity indices, higher diversity was observed in Trigonella caerulea as compared to Trigonella foenum-graecum. The genetic similarity matrices generated by ISSR and RAPD markers in both species were highly correlated (r = 0.78 at p = 0.001 for Trigonella foenum-graecum and r = 0.98 at p = 0.001 for Trigonella caerulea indicating congruence between these two systems

  8. Estimation of heavy metals in little blue heron (Egretta caerulea collected from sepetiba bay, rio de janeiro, brazil

    Directory of Open Access Journals (Sweden)

    Aldo Pacheco Ferreira

    2010-12-01

    Full Text Available Samples of liver and kidney of Little Blue Heron (Egretta caerulea collected on Sepetiba Bay, Rio de Janeiro, Brazil, were analysed for their copper, zinc, cadmium, lead, chromium and nickel content. Mean concentration levels in liver and kidney (μg.g-1 dry weight were 6.32955 and 6.57136 (Cd; 78.17409 and 96.89409 (Zn; 44.01727 and 65.20864 (Cu; 41.15091 and 39.62318 (Pb; 2.80091 and 4.16455 (Cr; and 9.27182 and 9.91091 (Ni, respectively. Results indicate relatively high trace metal contamination in E. caerulea, showing potential widespread biological and mutagenic adverse effects at trophic levels, and therefore, signalling risk to human health.Amostras de fígado e rim de Garça-azul pequena (Egretta caerulea coletadas na Baía de Sepetiba, Rio de Janeiro, Brasil, foram analisadas quanto às concentrações-traço de cobre, zinco, cádmio, chumbo, cromo e níquel. Os níveis médios de concentração no fígado e no rim (μg.g-1 de peso seco foram 6,32955 e 6,57136 (Cd; 78,17409 e 96,89409 (Zn; 44,01727 e 65,20864 (Cu; 41,15091 e 39,62318 (Pb; 2,80091 e 4,16455 (Cr e 9,27182 e 9,91091 (Ni, respectivamente. Estes resultados indicam contaminação relativamente alta de metais traço em E. caerulea, evidenciando potencial poder de generalização adversa de efeitos biológicos e mutagênicos em níveis tróficos, e, por conseguinte sinalizando risco para a saúde humana.

  9. Molecular cytogenetic study of three common Mediterranean limpets, Patella caerulea, P. rustica and P. ulyssiponensis (Archaeogastropoda, Mollusca).

    Science.gov (United States)

    Petraccioli, Agnese; Guarino, Fabio Maria; Maio, Nicola; Odierna, Gaetano

    2010-02-01

    The present paper shows the results of chromosome banding and rDNA-FISH study performed on several specimens of different populations of Patella caerulea, Patella rustica and Patella ulyssiponensis. The taxonomic attribution of specimens was ascertained by the molecular phylogenetic analysis of the mitochondrial 16S rRNA gene. P. caerulea and P. rustica had 2n = 18 chromosomes with first seven of biarmed pairs and the remaining two uniarmed pairs. P. ulyssiponensis had 2n = 16 with all biarmed chromosomes. Ag-NOR loci were on the short arms of the first metacentric pair in the three studied limpets, whereas they showed a different pattern of heterochromatin distribution and composition. A chromosome mosaicism was observed in several P. caerulea specimens, which exhibited an unpaired metacentric element and loss of a telocentric pair. The obtained results suggest that in the genus Patella specific diversification was accompanied by variations in heterochromatin distribution and composition and reduction of chromosome number by Robertsonian centric fusion.

  10. Putative midkine family protein up-regulation in Patella caerulea (Mollusca, Gastropoda) exposed to sublethal concentrations of cadmium

    Energy Technology Data Exchange (ETDEWEB)

    Vanucci, Silvana [Department of Animal Biology and Marine Ecology, University of Messina, Salita Sperone 31, 98166 S Agata, Messina (Italy)]. E-mail: silvana.vanucci@unime.it; Minerdi, Daniela [Department of Animal Biology and Genetics, University of Florence, via Romana 19, 50125 Florence (Italy); Kadomatsu, Kenji [Department of Biochemistry, University of Nagoya Graduate School of Medicine, 65 Tsurumai-cho, Showa-ku, Nagoya 466-8550 (Japan); Mengoni, Alessio [Department of Animal Biology and Genetics, University of Florence, via Romana 19, 50125 Florence (Italy); Bazzicalupo, Marco [Department of Animal Biology and Genetics, University of Florence, via Romana 19, 50125 Florence (Italy)

    2005-11-30

    A cDNA sequence of a putative midkine (MK) family protein was identified and characterised in the mollusc Patella caerulea. The midkine family consists of two members, midkine and pleiotrophin (PTN), and it is one of the recently discovered cytokines. Our results show that this putative midkine protein is up-regulated in specimens of P. caerulea exposed to sublethal cadmium concentrations (i.e. 0.5 and 1 mg l{sup -1} Cd) over a 10-day exposure period. Semiquantitative RT-PCR and quantitative Real time RT-PCR estimations indicate elevated expression of midkine mRNA in exposed specimens compared to controls. Moreover, RT-PCR Real time values were higher in the viscera (here defined as the part of the soft tissue including digestive gland plus gills) than in the foot (i.e. foot plus head plus heart) of the limpets. At present, information on the functional signalling significance of the midkine family proteins suggests that the up-regulation of P. caerulea putative midkine family protein is a distress signal likely with informative value on health status of the organism and with potential prognostic capability.

  11. Unravelling feeding territoriality in the Little Blue Heron, Egretta caerulea, in Cananéia, Brazil

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    E Moralez-Silva

    Full Text Available Habitat use by the Little Blue Heron (Egretta caerulea and discovery of feeding territoriality are discussed here. The results showed the existence of a territorial individual defending an area (2,564.46 ± 943.56 m² close to the mangrove, and non-territorial individuals (9.17 ± 2.54 in the rest of a demarcated area (mean area for the non-territorial: 893.25 ± 676.72. A weak positive correlation (r = 0.47, df = 46, p < 0.05 was found between the overlapping of territorial and non-territorial individuals (2.85 ± 3.07 m² and the mean overlapped area for territorial individuals (171.41 ± 131.40 m². Higher capture (1.52 ± 1.14 × 1.00 ± 1.37 catches/minutes and success rates (0.45 ± 0.31 × 0.21 ± 0.27 and lower energy expenditure rates (45.21 ± 14.96 × 51.22 ± 14.37 steps/minutes; and 3.65 ± 2.55 × 4.94 ± 3.28 stabs/minutes were observed for individuals foraging in areas close to the mangrove. The results suggest that the observed territorial behaviour is more related to a number of food parameters than to intruder pressure, and also that the observed territoriality might be related to defense of areas with higher prey availability.

  12. Changes in soil organic matter and net nitrogen mineralization in heathland soils, after removal, addition or replacement of litter from Erica tetralix or Molinia caerulea.

    NARCIS (Netherlands)

    Vuuren, van M.M.I.; Berendse, F.

    1993-01-01

    The effects of different litter input rates and of different types of litter on soil organic matter accumulation and net N mineralization were investigated in plant communities dominated by Erica tetralix L. or Molinia caerulea (L.) Moench. Plots in which the litter on the soil had repeatedly been r

  13. Changes in soil organic matter and net nitrogen mineralization in heathland soils, after removal, addition or replacement of litter from Erica tetralix or Molinia caerulea.

    NARCIS (Netherlands)

    Vuuren, van M.M.I.; Berendse, F.

    1993-01-01

    The effects of different litter input rates and of different types of litter on soil organic matter accumulation and net N mineralization were investigated in plant communities dominated by Erica tetralix L. or Molinia caerulea (L.) Moench. Plots in which the litter on the soil had repeatedly been

  14. Application of on-line and off-line heart-cutting LC in determination of secondary metabolites from the flowers of Lonicera caerulea cultivar varieties.

    Science.gov (United States)

    Kula, Marta; Głód, Daniel; Krauze-Baranowska, Mirosława

    2016-11-30

    Lonicera caerulea is a shrub native to the Northen Hemisphere, with its fruits having a long tradition of being used in traditional medicine. The flowers, although a potential source of diverse phenolic compounds have not been studied in terms of phenolic content. In this paper, a 2D LC heart-cutting system, operating in both on-line and off-line modes, was developed and successfully employed in identification and quantification of secondary metabolites in the flowers of L. caerulea. A total of 51 compounds have been resolved and identified as either flavonoids, phenolic acids or iridoids. Flavonoids were the dominating group of compounds, alongside substantial levels of both phenolic acids and iridoids. A comparison between three varieties of L. caerulea flowers revealed that 'Wojtek' contained markedly more flavonols and phenolic acids than the remaining two varieties, whereas iridoids were at similar levels. Heart-cutting 2D LC method used in this study offers a convenient approach and an effective tool for secondary metabolite analysis in L. caerulea flowers, and possibly other species from the genus.

  15. Investigation of heavy metal pollution in eastern Aegean Sea coastal waters by using Cystoseira barbata, Patella caerulea, and Liza aurata as biological indicators.

    Science.gov (United States)

    Aydın-Önen, S; Öztürk, M

    2017-01-19

    In order to have an extensive contamination profile of heavy metal levels (Cd, Cu, Fe, Mn, Ni, Pb, and Zn), seawater, sediment, Patella caerulea, Cystoseira barbata, and Liza aurata were investigated by using inductively coupled plasma-atomic emission spectrometry (ICP-AES). Samples were collected from five coastal stations along the eastern Aegean Sea coast (Turkey) on a monthly basis from July 2002 through May 2003. According to the results of this study, heavy metal levels were arranged in the following sequence: Fe > Pb > Zn > Mn > Ni > Cu > Cd for water, Fe > Cu > Mn > Ni > Zn > Pb > Cd for sediment, Fe > Zn > Mn > Pb > Ni > Cd > Cu for C. barbata, Fe > Zn > Mn > Ni > Pb > Cu > Cd for P. caerulea, and Fe > Zn > Mn > Cu > Ni > Pb > Cd for L. aurata. Moreover, positive relationships between Fe in water and Mn in water, Fe in sediment and Mn in sediment, Fe in C. barbata and Mn in C. barbata, Fe in P. caerulea and Mn in P. caerulea, and Fe in L. aurata and Mn in L. aurata may suggest that these metals could be originated from the same anthropogenic source. C. barbata represented with higher bioconcentration factor (BCF) values, especially for Fe, Mn, and Zn values. This observation may support that C. barbata can be used as an indicator species for the determinations of Fe, Mn, and Zn levels. Regarding Turkish Food Codex Regulation's residue limits, metal values in L. aurata were found to be lower than the maximum permissible levels issued by Turkish legislation and also the recommended limits set by FAO/WHO guidelines. The results of the investigation indicated that P. caerulea, L. aurata, and especially C. barbata are quantitative water-quality bioindicators and biomonitoring subjects for biologically available metal accumulation for Aegean Sea coastal waters.

  16. Cryptic species obscure introduction pathway of the blue Caribbean sponge (Haliclona (Soestella) caerulea), (order: Haplosclerida) to Palmyra Atoll, Central Pacific.

    Science.gov (United States)

    Knapp, Ingrid S; Forsman, Zac H; Williams, Gareth J; Toonen, Robert J; Bell, James J

    2015-01-01

    Cryptic species are widespread across the phylum Porifera making the identification of non-indigenous species difficult, an issue not easily resolved by the use of morphological characteristics. The widespread order Haplosclerida is a prime example due to limited and plastic morphological features. Here, we study the reported introduction of Haliclona (Soestella) caerulea from the Caribbean to Palmyra Atoll via Hawai'i using morphological characteristics and genetic analyses based on one nuclear (18s rDNA) and three mitochondrial (COI, the barcoding COI extension (COI ext.) and rnl rDNA) markers. Despite no clear division in lengths of the oxea spicules between the samples, both mtDNA and nDNA phylogenetic trees supported similar topologies resolving two distinct clades. Across the two clades, the concatenated mtDNA tree resolved twelve subclades, with the COI ext. yielding most of the variability between the samples. Low sequence divergence values (0.68%) between two of the subclades indicate that the same species is likely to occur at Palmyra, Hawai'i and the Caribbean, supporting the hypothesis that H. caerulea was introduced to Palmyra from the Caribbean, although whether species came directly from the Caribbean to Palmyra or from Hawai'i remains unresolved. Conversely, the pattern of highly divergent cryptic species supports the notion that traditionally used spicule measurements are taxonomically unreliable in this group. This study illustrates how understanding the scale of within- as opposed to between-species level genetic variation is critical for interpreting biogeographic patterns and inferring the origins of introduced organisms.

  17. Cryptic species obscure introduction pathway of the blue Caribbean sponge (Haliclona (Soestella caerulea, (order: Haplosclerida to Palmyra Atoll, Central Pacific

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    Ingrid S. Knapp

    2015-08-01

    Full Text Available Cryptic species are widespread across the phylum Porifera making the identification of non-indigenous species difficult, an issue not easily resolved by the use of morphological characteristics. The widespread order Haplosclerida is a prime example due to limited and plastic morphological features. Here, we study the reported introduction of Haliclona (Soestella caerulea from the Caribbean to Palmyra Atoll via Hawaiʻi using morphological characteristics and genetic analyses based on one nuclear (18s rDNA and three mitochondrial (COI, the barcoding COI extension (COI ext. and rnl rDNA markers. Despite no clear division in lengths of the oxea spicules between the samples, both mtDNA and nDNA phylogenetic trees supported similar topologies resolving two distinct clades. Across the two clades, the concatenated mtDNA tree resolved twelve subclades, with the COI ext. yielding most of the variability between the samples. Low sequence divergence values (0.68% between two of the subclades indicate that the same species is likely to occur at Palmyra, Hawaiʻi and the Caribbean, supporting the hypothesis that H. caerulea was introduced to Palmyra from the Caribbean, although whether species came directly from the Caribbean to Palmyra or from Hawaiʻi remains unresolved. Conversely, the pattern of highly divergent cryptic species supports the notion that traditionally used spicule measurements are taxonomically unreliable in this group. This study illustrates how understanding the scale of within- as opposed to between-species level genetic variation is critical for interpreting biogeographic patterns and inferring the origins of introduced organisms.

  18. Cell kinetics during regeneration in the sponge Halisarca caerulea: how local is the response to tissue damage?

    Directory of Open Access Journals (Sweden)

    Brittany E. Alexander

    2015-03-01

    Full Text Available Sponges have a remarkable capacity to rapidly regenerate in response to wound infliction. In addition, sponges rapidly renew their filter systems (choanocytes to maintain a healthy population of cells. This study describes the cell kinetics of choanocytes in the encrusting reef sponge Halisarca caerulea during early regeneration (0–8 h following experimental wound infliction. Subsequently, we investigated the spatial relationship between regeneration and cell proliferation over a six-day period directly adjacent to the wound, 1 cm, and 3 cm from the wound. Cell proliferation was determined by the incorporation of 5-bromo-2′-deoxyuridine (BrdU. We demonstrate that during early regeneration, the growth fraction of the choanocytes (i.e., the percentage of proliferative cells adjacent to the wound is reduced (7.0 ± 2.5% compared to steady-state, undamaged tissue (46.6 ± 2.6%, while the length of the cell cycle remained short (5.6 ± 3.4 h. The percentage of proliferative choanocytes increased over time in all areas and after six days of regeneration choanocyte proliferation rates were comparable to steady-state tissue. Tissue areas farther from the wound had higher rates of choanocyte proliferation than areas closer to the wound, indicating that more resources are demanded from tissue in the immediate vicinity of the wound. There was no difference in the number of proliferative mesohyl cells in regenerative sponges compared to steady-state sponges. Our data suggest that the production of collagen-rich wound tissue is a key process in tissue regeneration for H. caerulea, and helps to rapidly occupy the bare substratum exposed by the wound. Regeneration and choanocyte renewal are competing and negatively correlated life-history traits, both essential to the survival of sponges. The efficient allocation of limited resources to these life-history traits has enabled the ecological success and diversification of sponges.

  19. Occurrence of Aglae caerulea Lepeletier & Serville (Hymenoptera: Apidae: Euglossini) in the Parque Nacional da Chapada dos Guimarães, Mato Grosso State, Brazil.

    Science.gov (United States)

    dos Anjos-Silva, Evandson J; Camillo, Evandro; Garófalo, Carlos A

    2006-01-01

    In a study conducted in the gallery forest of the Vale doVeu de Noiva in the Parque Nacional da Chapada dos Guimarães, Mato Grosso state, chemical baits were used to attract and sample male orchid bees. From September 2003 to July 2005, male euglossine bees were captured monthly, from 8:00 a.m. to 4:00 p.m. as they arrived at the baits. Of the 264 males captured, eight males belonged to Aglae caerulea Lepeletier & Serville, a cleptoparasitic euglossine species that presumably occurred only in the Amazon basin. Therefore, the occurrence of A. caerulea in this study area extends its geographical distribution range by approximately 2,400 km southwards in South America, as it is now recorded in both the Amazon and Platina basins.

  20. The effect of the shape of gaps on microenvironmental conditions and seedling recruitment in Molinietum caeruleae meadows

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    Kinga Kostrakiewicz-Gierałt

    2015-07-01

    Full Text Available Cessation of the management of semi-natural habitats such as grasslands and meadows contributes to secondary succession and encroachment of native and alien tall-growing perennials, large tussock grasses, shrubs, and trees. Thus, the formation of gaps in the plant canopy and litter, enabling seedling recruitment, appears to be a very effective method for the restoration of several plant communities. The main objective of the research was to assess the effect of the shape of openings on microenvironmental conditions and seedling recruitment in Molinietum caeruleae patches in various habitat conditions. In all study patches, circular and linear openings, comparable in area, were randomly created through the removal of plant canopy and litter layer. The circular gaps presented greater light availability and lower soil humidity than linear openings, while soil temperature within differently shaped openings was similar. Regardless of differences in microenvironmental conditions, the total number of seedlings in differently shaped gaps did not vary considerably. Three plant categories were found: (i those recruited mostly in circular openings, (ii those recruited mostly in linear gaps, (iii those colonizing circular and linear gaps similarly. The colonizers of circular gaps represented various synecological groups (ruderal, grasslands and meadows, young tree communities and diverse life forms (therophytes, hemicryptophytes, chamaephytes, phanerophytes, while the colonizers of linear gaps were meadow and grassland hemicryptophytes. The formation of linear openings contributes to increases in the abundance of meadow taxa, while the creation of circular openings may have a negative effect, contributing to the promotion of the secondary succession process.

  1. Host stress response is important for the pathogenesis of the deadly amphibian disease, Chytridiomycosis, in Litoria caerulea.

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    John D Peterson

    Full Text Available Chytridiomycosis, a disease caused by Batrachochytrium dendrobatidis, has contributed to worldwide amphibian population declines; however, the pathogenesis of this disease is still somewhat unclear. Previous studies suggest that infection disrupts cutaneous sodium transport, which leads to hyponatremia and cardiac failure. However, infection is also correlated with unexplained effects on appetite, skin shedding, and white blood cell profiles. Glucocorticoid hormones may be the biochemical connection between these disparate effects, because they regulate ion homeostasis and can also influence appetite, skin shedding, and white blood cells. During a laboratory outbreak of B. dendrobatidis in Australian Green Tree Frogs, Litoria caerulea, we compared frogs showing clinical signs of chytridiomycosis to infected frogs showing no signs of disease and determined that diseased frogs had elevated baseline corticosterone, decreased plasma sodium and potassium, and altered WBC profiles. Diseased frogs also showed evidence of poorer body condition and elevated metabolic rates compared with frogs showing no signs of disease. Prior to displaying signs of disease, we also observed changes in appetite, body mass, and the presence of shed skin associated with infected but not yet diseased frogs. Collectively, these results suggest that elevated baseline corticosterone is associated with chytridiomycosis and correlates with some of the deleterious effects observed during disease development.

  2. ESTUDIO CITOGENÉTICO EN HÍBRIDOS ENTRE UNA ESPECIE OCTOPLOIDE, TURNERA AURELII y DOS DIPLOIDES, T. CAERULEA y T. JOELII

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    Aveliano Fernández

    2010-11-01

    Full Text Available

    Se realizaron hibridaciones entre T. aurelii, 2n = 8x = 40, y dos especies diploides (2n = 2x = 1 O, T.caerulea y T. joelii. Se estudiaron los híbridos citológicamente para determinar su relación genómica. Se obtuvieron dos híbridos pentaploides con 2n = 5x = 25. La meiosis en el híbrido T. aurelii x T.caerulea fue irregular con numerosos rezagados y algunos puentes, con una media de emparejamiento las relaciones fueron de 16,37, 4,01 y 0,19 II III. El híbrido T. aurelii x T. joelii mostró células muy irregulares, con numerosos rezagados y puentes, así como gametos no reducidos. La media de emparejamiento relación fue de 17.49 I, 3,32 II, III, 0.26 y 0.01 IV. En trabajos anteriores las fórmulas genómicas AªAªAºAºBBBºBº y CC se propusieron para T. aurelii y T.caerulea respectivamente. Sobre la base de los cromosomas que se encuentran las asociaciones, tanto en híbridos, DD se propone para T.joelii, ya que tiene un genoma diferente. Probablemente, la presencia de bivalentes en ambos híbridos puede ser debido a la vinculación entre los cromosomas homoeologous de la planta madre T. aurelii, que es un allooctoploide segmentario

  3. A HPTLC densitometric determination of flavonoids from Passiflora alata, P. edulis, P. incarnata and P. caerulea and comparison with HPLC method.

    Science.gov (United States)

    Pereira, Cintia A M; Yariwake, Janete H; Lanças, Fernando M; Wauters, Jean-Noël; Tits, Monique; Angenot, Luc

    2004-01-01

    A high-performance thin layer chromatographic (HPTLC) method was developed in order to determine quantitatively the flavonoids in leaves of Passiflora alata, P. edulis, P. caerulea and P. incarnata. The content of orientin and isoorientin was determined, and the results were compared with those obtained using a quantitative HPLC-UV method. The latter employed rutin as standard and was developed to analyse flavonoid content from Passiflora leaves for the purpose of ensuring the quality of Passiflora phytomedicines. The results obtained using the two methods indicate that there are qualitative and quantitative differences in the flavonoids of the reference Passiflora species studied. The two methods were also employed to analyse commercial samples to illustrate their application in qualitative ('fingerprint') and quantitative determination, demonstrating their feasibility in the quality control of flavonoids from crude Passiflora drugs and phytomedicines. The HPLC conditions used are also suitable for the quantitative analysis of aqueous extracts (Passiflora infusions).

  4. MEASURING INTRAOCULAR PRESSURE IN WHITE'S TREE FROGS (LITORIA CAERULEA) BY REBOUND TONOMETRY: COMPARING DEVICE, TIME OF DAY, AND MANUAL VERSUS CHEMICAL RESTRAINT METHODS.

    Science.gov (United States)

    Hausmann, Jennifer C; Krisp, Ashley; Sladky, Kurt; Miller, Paul E; Mans, Christoph

    2017-06-01

    Ocular diseases reported in frogs include uveitis and glaucoma, which are associated with changes in intraocular pressure (IOP). The objectives of this study were to characterize the normal IOP for White's tree frogs ( Litoria caerulea ) using two types of rebound tonometers, and to assess whether time of day or method of restraint affected IOP. Eighteen conscious, unrestrained, ophthalmologically normal frogs were used to measure IOP using TonoVet® and TonoLab® tonometers, at three time points during the day. In a subset of 12 frogs, IOP was measured while under manual restraint using the TonoVet. Anesthesia was induced in 9 frogs using two different concentrations of MS-222 (0.5 g/L and 2 g/L) in order to evaluate for changes in IOP with the TonoVet. Mean (± SD) IOP values for the TonoLab (16.8 ± 3.9 mm Hg) were significantly higher than TonoVet values (14.7 ± 1.6 mm Hg; P frogs had significantly lower IOP (13.4 ± 1.5 mm Hg) compared with unrestrained frogs (15.3 ± 1.2 mm Hg; P frogs, but time of day and manual restraint can affect IOP values.

  5. Abundance, breeding and food of the Little Blue Heron Egretta caerulea (Aves, Ardeidae in the Patos Lagoon estuary, a recently colonized area in southern Brazil

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    Dimas Gianuca

    2012-03-01

    Full Text Available We document the expansion of the breeding distribution of the Little Blue Heron Egretta caerulea (Linnaeus, 1758 to 850 km beyond its previous southern limit in South America. In addition we present data on abundance, breeding biology and food of the species in the Patos Lagoon estuary, the area which the species recently colonized. The maximum abundance recorded in the breeding colony and in a nocturnal roosting site was 53 and 49 individuals respectively. Nesting occurred from September to March. Birds nested in a mixed breeding colony together with about 3,000 breeding pairs of seven other species of Pelecaniformes, in a swampy forest near the margin of the estuary. Five nests were between 1.5 and 4.3 m from the ground, on the shrub Daphnopsis racemosa (Thymelaeaceae, on the trees Sebastiana brasiliensis (Euphorbiaceae and Mimosa bimucronata (Leguminosae, or on the bamboo Bambusa sp. (Poaceae. Four nests produced two fledglings each, while one nest was abandoned. Of 13 grouped samples of food regurgitated by five nestlings, Pink Shrimp Farfantepenaeus paulensis (Perez-Farfante, 1967 constituted 70% in mass, while total length of ingested fishes and shrimps varied mostly between 20 and 50 mm. Estuarine prey items represented 99% of the total food mass. The recent southward expansion of the breeding range of the Little Blue Heron in South America may be a response to climate warming of the Patos Lagoon estuary. Degradation of estuaries in the southwestern Atlantic may also be forcing the birds to breed in areas outside previous geographical range.

  6. Flavonoid glycosides from Persea caerulea. Unraveling their interactions with SDS-micelles through matrix-assisted DOSY, PGSE, mass spectrometry, and NOESY.

    Science.gov (United States)

    Álvarez, Juan M; Raya-Barón, Álvaro; Nieto, Pedro M; Cuca, Luis E; Carrasco-Pancorbo, Alegría; Fernández-Gutiérrez, Alberto; Fernández, Ignacio

    2016-04-13

    Two flavonoid glycosides derived from rhamnopyranoside (1) and arabinofuranoside (2) have been isolated from leaves of Persea caerulea for the first time. The structures of 1 and 2 have been established by (1) H NMR, (13) C NMR, and IR spectroscopy, together with LC-ESI-TOF and LC-ESI-IT MS spectrometry. From the MS and MS/MS data, the molecular weights of the intact molecules as well as those of quercetin and kaempferol together with their sugar moieties were deduced. The NMR data provided information on the identity of the compounds, as well as the α and β configurations and the position of the glycosides on quercetin and kaempferol. We have also explored the application of sodium dodecyl sulfate (SDS) normal micelles in binary aqueous solution, at a range of concentrations, to the diffusion resolution of these two glycosides, by the application of matrix-assisted diffusion ordered spectroscopy (DOSY) and pulse field gradient spin echo (PGSE) methodologies, showing that SDS micelles offer a significant resolution which can, in part, be rationalized in terms of differing degrees of hydrophobicity, amphiphilicity, and steric effects. In addition, intra-residue and inter-residue proton-proton distances using nuclear Overhauser effect build-up curves were used to elucidate the conformational preferences of these two flavonoid glycosides when interacting with the micelles. By the combination of both diffusion and nuclear Overhauser spectroscopy techniques, the average location site of kaempferol and quercetin glycosides has been postulated, with the former exhibiting a clear insertion into the interior of the SDS-micelle, whereas the latter is placed closer to the surface. Copyright © 2016 John Wiley & Sons, Ltd.

  7. The short-term effects of ecological restoration on carbon dioxide fluxes from a Molinia caerulea dominated marginal upland blanket bog.

    Science.gov (United States)

    Gatis, Naomi; Luscombe, David; Grand-Clement, Emilie; Hartley, Iain; Anderson, Karen; Brazier, Richard E.

    2014-05-01

    Peat soils in the UK represent a significant long-term carbon store. Despite this the annual imbalance between uptake and release is small and susceptible to change in response to land management, atmospheric deposition and climate change. The shallow marginal peatlands of Exmoor, southwest England, have historically been subject to extensive drainage and are known to be vulnerable to future changes in climate as they lie at the southern edge of the ombrotrophic peatland climatic envelope. However little is known about the processes that drive CO2 fluxes from degraded Molinia caerulea dominated upland mires or the potential effect that restoration through drainage blocking will have. The Mires-on-the-Moors project (www.upstreamthinking.org), funded by South West Water aims to restore the eco-hydrological functionality to over 2000 hectares of drained mire by April 2015. We hypothesised that such mire restoration will return these upland mires to peat forming/carbon sequestering systems. Partitioned below-ground respiration fluxes as well as biotic and abiotic variables, were collected on various dates in 2012 and 2013 along six transects adjacent to three pairs of drainage ditches. One of each pair was restored by blocking with peat dams in spring 2013 whilst the other remained unrestored to act as a control. Monitoring locations were arranged along transects to investigate the spatial variation in gas fluxes with respect to the drainage ditches. By partitioning below-ground fluxes it was possible to monitor root-derived (autotrophic) and more importantly soil-derived (heterotrophic) respiration providing an insight to the effects of ditch blocking on the long term carbon store. Here we present CO2 fluxes for the growing seasons at two critical stages in the restoration process: (a) immediately pre-restoration and (b) immediately post- restoration, and discuss the temporally and spatially variable processes driving below-ground CO2 fluxes. Respiration rates were

  8. ‘蓓蕾’蓝靛果中花色苷组成鉴定及抗氧化能力比较分析%Identification and Comparative Analysis of Antioxidant Ability of Anthocyanins inLonicera caerulea Berry Extracts

    Institute of Scientific and Technical Information of China (English)

    安小琦; 王月华; 孟宪军

    2016-01-01

    对蓝靛果中花色苷的组成进行鉴定,并对其抗氧化能力进行比较分析。实验以蓝靛果(‘蓓蕾’品种)为原料,采用有机溶剂60%乙醇(0.1%盐酸酸化)溶液,超声辅助提取90 min;利用D101大孔树脂对获得的粗提物进行纯化,之后冷冻干燥制得粉末物质。通过pH示差法和福林-酚法分别测定总花色苷含量和总多酚含量,分别为(353.35±0.79)、(474.01±2.12)mg/g;并用高效液相色谱-质谱联用法对花色苷组成进行鉴定,共发现11种花色苷,其中矢车菊-3-葡萄糖苷为主要花色苷(90.679%)。此外,实验还通过总抗氧化能力测定和2,2’-联氨-二(3-乙基苯并噻唑-6-磺酸)二铵盐自由基、1,1-二苯基-2-三硝基苯肼自由基清除能力测定,比较分析蓝靛果花色苷提取物、矢车菊-3-葡萄糖苷、VC的抗氧化能力,结果表明,3种物质的抗氧化能力排序为:矢车菊-3-葡萄糖苷>花色苷提取物>VC。%The identification of anthocyanins composition and antioxidant activity ofLonicera caerulea berry extracts was investigated in this study. ‘Beilei’L. caerulea berries were ultrasonically extracted with 60% ethanol containing 0.1% HCl for 90 min. D101 macroporous resin was used to purify the obtained extracts. After that, freeze drying was conducted to obtain powder. The contents of total anthocyanins and polyphenols were determined using pH differential and Folin-reagent method as (353.35 ± 0.79) mg/g and (474.01 ± 2.12) mg/g, respectively. High performance liquid chromatography-tandem mass spectrometry (HPLC-MS/MS) was used for the identification of anthocyanin composition. A total of 11 individual anthocyanins were found with cyanidin-3-glucoside (90.679%) being the major anthocyanin. Additionally, total antioxidant capacity (T-AOC) and 2,2’-azinobis(3-ethylbenzothiazoline-6-sulphonate) radical (ABTS+·), 1,1- diphenyl-2-picrylhydrazyl (DPPH) radical

  9. A fuzzy-logic tool for multi-criteria decision making in fisheries: the case of the South African pelagic fishery

    DEFF Research Database (Denmark)

    Paterson, B.; Jarre, Astrid; Moloney, C.L.

    2007-01-01

    The present study presents an electronic decision-support tool that uses a fuzzy-logic model of expert knowledge to assist in multi-criteria decision-making in the context of an Ecosystem Approach to Fisheries (EAF). The prototype model integrates the multiple goals and objectives related...... to the evaluation of the ecosystem performance of the South African sardine Sardinops sagax fishery into a NetWeaver knowledge base and provides intuitive visual outputs to communicate results to managers and stakeholders. The software tool was developed in a consultative process with key experts and follows...... on expert opinion. Results show that the model is robust and conservative. The strength of the approach lies in the ability to include variables that are difficult to measure. It provides a means of rendering value judgements explicit and transparent. The tool synthesises a large amount of information...

  10. An Empty Donut Hole: the Great Collapse of a North American Fishery

    Directory of Open Access Journals (Sweden)

    Kevin M. Bailey

    2011-06-01

    Full Text Available Walleye pollock (Theragra chalcogramma is North America's most abundant and lucrative natural fishery, and is the world's largest fishery for human food. The little-known demise of the "Donut Hole" stock of pollock in the Aleutian Basin of the central Bering Sea during the 1980s is the most spectacular fishery collapse in North American history, dwarfing the famous crashes of the northern cod and Pacific sardine (Sardinops sagax. This collapse has received scant recognition and became evident only in 1993 when fishing was banned by an international moratorium; nearly 20 years later it has not recovered. The history of fishing in the North Pacific Ocean after World War II offers some insights into how the Donut Hole pollock fishery developed, and the societal and economic pressures behind it that so influenced the stock's fate. Overfishing was, without a doubt, the greatest contributor to the collapse of the Aleutian Basin pollock fishery, but a lack of knowledge about population biocomplexity added to the confusion of how to best manage the harvest. Unfortunately, the big scientific questions regarding the relationship of Donut Hole fish to other stocks are still unanswered.

  11. Fish larvae retention linked to abrupt bathymetry at Mejillones Bay (northern Chile during coastal upwelling events

    Directory of Open Access Journals (Sweden)

    Pablo M Rojas

    2014-11-01

    Full Text Available The influence of oceanic circulation and bathymetry on the fish larvae retention inside Mejillones Bay, northern Chile, was examined. Fish larvae were collected during two coastal upwelling events in November 1999 and January 2000. An elevated fish larvae accumulation was found near an oceanic front and a zone of low-speed currents. Three groups of fish larvae were identified: the coastal species (Engraulis ringens and Sardinops sagax, associated with high chlorophyll-a levels; larvae from the families Phosichthyidae (Vinciguerria lucetia and Myctophidae (Diogenichthys laternatus and Triphoturus oculeus, associated with the thermocline (12°C, and finally, larvae of the families Myctophidae (Diogenichthys atlanticus and Bathylagidae (Bathylagus nigrigenys, associated with high values of temperature and salinity. The presence of a seamount and submarine canyon inside Mejillones Bay appears to play an important role in the circulation during seasonal upwelling events. We propose a conceptual model of circulation and particles retention into Mejillones Bay. The assumption is that during strong upwelling conditions the flows that move along the canyon emerge in the centre of Mejillones Bay, producing a fish larvae retention zone. Understanding the biophysical interactions responsible to trap and/or concentrate particles is essential to protect these fragile upwelling ecosystems.

  12. A WELL PRESERVED SKELETON OF THE FOSSIL SHARK COSMOPOLITODUS HASTALIS FROM THE LATE MIOCENE OF PERU, FEATURING FISH REMAINS AS FOSSILIZED STOMACH CONTENTS

    Directory of Open Access Journals (Sweden)

    ALBERTO COLLARETA

    2017-01-01

    Full Text Available Both the preservation of the poorly mineralized skeleton of sharks and the preservation of stomach contents are rarely observed in the fossil record. Here we report on a partial skeleton of a lamniform shark, including portions of the visceral arches and the anterior segment of the vertebral column, collected from the late Miocene beds of the Pisco Formation exposed at Cerro Yesera (Ica Desert, South Peru. Based on the morphology of the preserved teeth, this specimen was determined as a juvenile of the extinct lamnid species Cosmopolitodus hastalis. The shark skeleton includes remains of fish (featuring a pilchard determined as Sardinops sp. cf. S. sagax in the abdominal region. These fish remains are interpreted herein as the fossilized stomach contents of the shark. For the first time, piscivory is demonstrated in a juvenile individual of Cosmopolitodus hastalis. This result is consistent with the current knowledge about the feeding habits of immature individuals of extant lamniform shark species (including Carcharodon carcharias and Isurus oxyrinchus. Our report further outlines the fundamental role of schooling pilchards in the late Miocene trophic chains of the highly productive coastal waters off present South Peru. Moreover, the find of this well preserved shark skeleton strengthens the qualification of the Pisco Formation as a Fossil-Lagerstätte, and emphasizes the role of early mineralization processes in cases of exceptional preservation.

  13. Macro-Scale Patterns in Upwelling/Downwelling Activity at North American West Coast

    Science.gov (United States)

    Saldívar-Lucio, Romeo; Di Lorenzo, Emanuele; Nakamura, Miguel; Villalobos, Héctor; Lluch-Cota, Daniel; Del Monte-Luna, Pablo

    2016-01-01

    The seasonal and interannual variability of vertical transport (upwelling/downwelling) has been relatively well studied, mainly for the California Current System, including low-frequency changes and latitudinal heterogeneity. The aim of this work was to identify potentially predictable patterns in upwelling/downwelling activity along the North American west coast and discuss their plausible mechanisms. To this purpose we applied the min/max Autocorrelation Factor technique and time series analysis. We found that spatial co-variation of seawater vertical movements present three dominant low-frequency signals in the range of 33, 19 and 11 years, resembling periodicities of: atmospheric circulation, nodal moon tides and solar activity. Those periodicities might be related to the variability of vertical transport through their influence on dominant wind patterns, the position/intensity of pressure centers and the strength of atmospheric circulation cells (wind stress). The low-frequency signals identified in upwelling/downwelling are coherent with temporal patterns previously reported at the study region: sea surface temperature along the Pacific coast of North America, catch fluctuations of anchovy Engraulis mordax and sardine Sardinops sagax, the Pacific Decadal Oscillation, changes in abundance and distribution of salmon populations, and variations in the position and intensity of the Aleutian low. Since the vertical transport is an oceanographic process with strong biological relevance, the recognition of their spatio-temporal patterns might allow for some reasonable forecasting capacity, potentially useful for marine resources management of the region. PMID:27893826

  14. Molecular epidemiology of viral haemorrhagic septicaemia virus (VHSV) in British Columbia, Canada, reveals transmission from wild to farmed fish.

    Science.gov (United States)

    Garver, Kyle A; Traxler, Garth S; Hawley, Laura M; Richard, Jon; Ross, Jay P; Lovy, Jan

    2013-05-27

    Viral haemorrhagic septicaemia virus (VHSV) is a fish pathogen found throughout the Northern Hemisphere and is capable of infecting and causing mortality in numerous marine and freshwater hosts. In the coastal waters of British Columbia, Canada, the virus has been detected for 20 yr with many occurrences of mass mortalities among populations of Pacific herring Clupea pallasii (Valenciennes) and sardine Sardinops sagax as well as detections among cultured Atlantic Salmo salar and Chinook Oncorhynchus tshawytscha salmon. We compared nucleotide sequence of the full glycoprotein (G) gene coding region (1524 nt) of 63 VHSV isolates sampled during its recorded presence from 1993 to 2011 from 6 species and a total of 29 sites. Phylogenetic analysis showed that all isolates fell into sub-lineage IVa within the major VHSV genetic group IV. Of the 63 virus isolates, there were 42 unique sequences, each of which was ephemeral, being repeatedly detected at most only 1 yr after its initial detection. Multiple sequence types were revealed during single viral outbreak events, and genetic heterogeneity was observed within isolates from individual fish. Moreover, phylogenetic analysis revealed a close genetic linkage between VHSV isolates obtained from pelagic finfish species and farmed salmonids, providing evidence for virus transmission from wild to farmed fish.

  15. No deep diving: evidence of predation on epipelagic fish for a stem beaked whale from the Late Miocene of Peru

    Science.gov (United States)

    Lambert, Olivier; Collareta, Alberto; Landini, Walter; Post, Klaas; Ramassamy, Benjamin; Di Celma, Claudio; Urbina, Mario; Bianucci, Giovanni

    2015-01-01

    Although modern beaked whales (Ziphiidae) are known to be highly specialized toothed whales that predominantly feed at great depths upon benthic and benthopelagic prey, only limited palaeontological data document this major ecological shift. We report on a ziphiid–fish assemblage from the Late Miocene of Peru that we interpret as the first direct evidence of a predator–prey relationship between a ziphiid and epipelagic fish. Preserved in a dolomite concretion, a skeleton of the stem ziphiid Messapicetus gregarius was discovered together with numerous skeletons of a clupeiform fish closely related to the epipelagic extant Pacific sardine (Sardinops sagax). Based on the position of fish individuals along the head and chest regions of the ziphiid, the lack of digestion marks on fish remains and the homogeneous size of individuals, we propose that this assemblage results from the death of the whale (possibly via toxin poisoning) shortly after the capture of prey from a single school. Together with morphological data and the frequent discovery of fossil crown ziphiids in deep-sea deposits, this exceptional record supports the hypothesis that only more derived ziphiids were regular deep divers and that the extinction of epipelagic forms may coincide with the radiation of true dolphins. PMID:26354940

  16. Metals and metalloids in Little Penguin (Eudyptula minor) prey, blood and faeces.

    Science.gov (United States)

    Finger, Annett; Lavers, Jennifer L; Dann, Peter; Kowalczyk, Nicole D; Scarpaci, Carol; Nugegoda, Dayanthi; Orbell, John D

    2017-04-01

    Piscivorous species like the Little Penguin (Eudyptula minor) are particularly at risk of being negatively impacted by pollution due to their heightened exposure through aquatic food chains. Therefore, determining the concentration of heavy metals in the fish prey of seabirds is an essential component of assessing such risk. In this study, we report on arsenic, cadmium, mercury, lead and selenium concentrations in three fish species, which are known to comprise a substantial part of the diet of Little Penguins at the urban colony of St Kilda, Melbourne, Australia. Metal concentrations in the fish sampled were generally within the expected limits, however, arsenic and mercury were higher than reported elsewhere. Anchovy (Engraulis australis) and sandy sprat (Hyperlophus vittatus) contained higher Hg concentrations than pilchard (Sardinops sagax), while sandy sprat and pilchard contained more selenium. We present these findings together with metal concentrations in Little Penguin blood and faeces, sampled within weeks of the fish collection. Mercury concentrations were highest in the blood, while faeces and fish prey species contained similar concentrations of arsenic and lead, suggesting faeces as a primary route of detoxification for these elements. We also investigated paired blood - faecal samples and found a correlation for selenium only. Preliminary data from stable isotope ratios in penguin blood indicate that changes in penguin blood mercury concentrations cannot be explained by trophic changes in their diet alone, suggesting a variation of bioavailable Hg within this semi-enclosed bay.

  17. A recent increase of swift terns Thalasseus bergii off South Africa - The possible influence of an altered abundance and distribution of prey

    Science.gov (United States)

    Crawford, Robert J. M.

    2009-12-01

    In the 2000s, there were large increases in the numbers of swift terns Thalasseus bergii breeding in the Western and Eastern Cape Provinces of South Africa, which are most plausibly attributed to good recruitment and to an increase in the proportion of mature birds breeding. Numbers increased coincidentally with a greatly increased abundance of two of the main prey species of swift terns, sardine Sardinops sagax and anchovy Engraulis encrasicolus, and remained high as these resources decreased. After 2005, numbers of swift terns breeding in the north and central portions of the Western Cape decreased, whereas numbers breeding farther south in that province increased. This followed displacements to the south and east of sardine and anchovy. In southern Africa, swift terns show low fidelity to breeding localities, which enables a rapid adjustment of the location of breeding to an altered availability of prey. For two seabirds that feed mainly on sardine and anchovy, but once breeding show high fidelity to colonies, African penguin Spheniscus demersus and Cape gannet Morus capensis, proportions breeding in the south and east also increased, but there were substantial decreases in overall numbers breeding in the Western Cape.

  18. Composition, abundance, distribution and seasonality of larval fishes in the shallow nearshore of the proposed Greater Addo Marine Reserve, Algoa Bay, South Africa

    Science.gov (United States)

    Pattrick, Paula; Strydom, Nadine A.

    2008-08-01

    The larval fish assemblage was investigated in the shallow, nearshore region of a proposed marine protected area in eastern Algoa Bay, temperate South Africa, prior to proclamation. Sampling was conducted at six sites along two different depth contours at ˜5 m and ˜15 m to assess shore association. Larvae were collected by means of stepped oblique bongo net tows deployed off a ski-boat, twice per season for 2 years between 2005 and 2007. In total, 6045 larval fishes were collected representing 32 families and 78 species. The Gobiidae, Cynoglossidae, Clupeidae, Engraulidae and Sparidae were the dominant fish families. Catches varied significantly among seasons peaking in spring with a mean of ˜200 larvae/100 m 3. Mean overall larval density was higher along the deeper contour, at ˜15 m (40 larvae/100 m 3). The preflexion stage of development dominated catches at the ˜5 m (80%) and ˜15 m (73%) depth contours. Body lengths of Argyrosomus thorpei, Caffrogobius gilchristi, Diplodus capensis, Heteromycteris capensis and Solea turbynei, all estuary associated species, were larger at the shallow sites nearer to shore. Larvae of coastal species that produce benthic eggs dominated catches (75%) in the shallow sites (˜5 m) but were less abundant (32%) farther from shore at the deeper (˜15 m) sites. All developmental stages of D. capensis, Engraulis capensis, H. capensis, Sardinops sagax and two Pomadasys species were found in the study area. It appears that some species use the shallow nearshore as a nursery area.

  19. Influence of ocean winds on the pelagic ecosystem in upwelling regions.

    Science.gov (United States)

    Rykaczewski, Ryan R; Checkley, David M

    2008-02-12

    Upwelling of nutrient-rich, subsurface water sustains high productivity in the ocean's eastern boundary currents. These ecosystems support a rate of fish harvest nearly 100 times the global mean and account for >20% of the world's marine fish catch. Environmental variability is thought to be the major cause of the decadal-scale biomass fluctuations characteristic of fish populations in these regions, but the mechanisms relating atmospheric physics to fish production remain unexplained. Two atmospheric conditions induce different types of upwelling in these ecosystems: coastal, alongshore wind stress, resulting in rapid upwelling (with high vertical velocity, w); and wind-stress curl, resulting in slower upwelling (low w). We show that the level of wind-stress curl has increased and that production of Pacific sardine (Sardinops sagax) varies with wind-stress curl over the past six decades. The extent of isopycnal shoaling, nutricline depth, and chlorophyll concentration in the upper ocean also correlate positively with wind-stress curl. The size structure of plankton assemblages is related to the rate of wind-forced upwelling, and sardine feed efficiently on small plankters generated by slow upwelling. Upwelling rate is a fundamental determinant of the biological structure and production in coastal pelagic ecosystems, and future changes in the magnitude and spatial gradient of wind stress may have important and differing effects on these ecosystems. Understanding of the biological mechanisms relating fisheries production to environmental variability is essential for wise management of marine resources under a changing climate.

  20. Coupling between the environment and the pelagic resources exploited off northern Chile: ecosystem indicators and a conceptual model Acoplamiento entre el ambiente y los recursos pelágicos explotados en el norte de Chile: un modelo conceptual

    Directory of Open Access Journals (Sweden)

    Eleuterio Yáñez

    2008-01-01

    Full Text Available The eastern boundary of the Chile-Peru Current System constitutes one of the most biologically productive ecosystems in the world, due largely to coastal upwelling and the horizontal advection of nutrients. In this ecosystem, El Niño events are of great importance in the interannual variability of the environment. A change was observed in the environmental regime at the beginning of the 1970s with the onset of the 1972-1973 El Niño, marking an important decrease in the anchovy fishery (Engraulis ringens. After the mid-1970s, sardine (Sardinops sagax landings increased noticeably. A second regime shift at the end of the 1980s was seen mostly in the noticeable recovery of anchovy and the decline of sardine. Herein, we present an integrated conceptual model of the different local and large-scale phenomena that affect the marine environment off northern Chile and the distribution and abundance of pelagic resources. The model considers an analysis of environmental and bio-fishery data on different scales and describes how the interdecadal (associated with re-gime shifts and interannual (associated with El Niño events fluctuations in the Equatorial Pacific are mani-fested in the eastern South Pacific and, therefore, in the northern zone off Chile, affecting the annual eyele, the dynamic of the coastal trapped waves, and coastal upwelling. In this framework, interdecadal fluctuations play an important role in the anchovy-sardine-anchovy replacement sequence.El borde oriental del Sistema de Corrientes de Chile-Perú constituye uno de los ecosistemas de mayor productividad biológica del mundo, debido principalmente a la surgencia costera y advección horizontal de nutrientes. En este ecosistema, los eventos El Niño son de mayor importancia en la variabilidad interanual del ambiente. No obstante, un cambio de régimen ambiental es observado a inicio de los 70's el que hubiera comenzado con El Niño 1972-73 y que marca la gran disminución de la

  1. Biomasa acústica y distribución del jurel Trachurus murphyien el Perú

    Directory of Open Access Journals (Sweden)

    Marceliano Segura

    2013-10-01

    Full Text Available Se analizan los resultados de las evaluaciones hidroacústicas del recurso jurel Trachurus murphyi Nichols 1920 realizadas en aguas peruanas entre 1983 – 2012. Desde 1983 se incluyó al T. murphyicomo especie de estudio durante los cruceros de evaluación de recursos pelágicos ejecutados por el Instituto del Mar del Perú. Debido al énfasis en la estimación de biomasa de la anchoveta Engraulis ringens y de la sardina Sardinops sagax cuando esta última es más abundante, los cruceros se llevan a cabo durante el verano austral y las áreas de evaluación están circunscritas a las zonas más costeras hasta 100 mn, con sólo algunas exploraciones en otras estaciones y hasta 200 millas. El máximo valor de biomasa de 8.51 millones de toneladas de T. murphyien aguas peruanas estimado con las evaluaciones hidroacústicas fue encontrado durante el crucero realizado en otoño (marzo-mayo de 1983. En los años siguientes los estimados de biomasa acústica fluctuaron entre 180 mil toneladas en 1985 y otro máximo de 8.47 millones de toneladas en 1993, para luego disminuir gradualmente hasta un mínimo de 1239 t en 2010, con una ligera recuperación en los años 2011 y 2012. El área de distribución de T. murphyifue muy fluctuante en todo el periodo observado.

  2. Dynamic height: A key variable for identifying the spawning habitat of small pelagic fishes

    Science.gov (United States)

    Asch, Rebecca G.; Checkley, David M., Jr.

    2013-01-01

    Small pelagic fishes off southern California exhibit interannual variations in the regions they occupy. An enhanced understanding of these fluctuations could improve fisheries management and predictions of fish's responses to climate change. We investigated dynamic height as a variable for identifying the spawning habitat of northern anchovy (Engraulis mordax), Pacific sardine (Sardinops sagax), and jack mackerel (Trachurus symmetricus). During cruises between 1998 and 2004, dynamic height was calculated from temperature and salinity profiles, while fish egg concentration was measured with obliquely towed bongo nets and the Continuous, Underway Fish Egg Sampler. Dynamic height ranged between 68 and 108 cm, with values increasing offshore. The greatest probability of encountering anchovy, sardine, and jack mackerel eggs occurred at dynamic heights of 79-83 cm, 84-89 cm, and 89-99 cm, respectively. Four mechanisms were proposed to explain how dynamic height affects egg distribution: (1) dynamic height is a proxy for upper water column temperature and salinity, which are known to influence spawning habitat. (2) Low dynamic heights are indicative of coastal upwelling, which increases primary and secondary productivity. (3) Egg concentration is greater at dynamic heights coincident with geostrophic currents that transport larvae to favorable habitats. (4) Eddies delineated by dynamic height contours retain eggs in productive habitats. To evaluate these mechanisms, a generalized linear model was constructed using dynamic height, temperature, salinity, chlorophyll, zooplankton volume, geostrophic currents, and eddies as independent variables. Dynamic height explained more variance than any other variable in models of sardine and anchovy spawning habitat. Together temperature, salinity, and chlorophyll accounted for 80-95% of the dynamic height effect, emphasizing the importance of the first two mechanisms. However, dynamic height remained statistically significant in the

  3. Immunological cross-reactivity between four distant parvalbumins-Impact on allergen detection and diagnostics.

    Science.gov (United States)

    Sharp, Michael F; Stephen, Juan N; Kraft, Lukas; Weiss, Thomas; Kamath, Sandip D; Lopata, Andreas L

    2015-02-01

    Fish are the largest and most diverse group of vertebrates. Fish are also a part of the eight food groups that cause the majority of IgE mediated food reactions. Detection tools for fish allergens are however limited due to the great diversity of fish species, despite fish allergy and its major allergen parvalbumin being well documented. The most commonly studied fish are frequently consumed in North America and Europe. However, much less is known about fish allergens in the Australasian region although fish is widely consumed in this region. A comprehensive phylogenetic analysis was performed of known parvalbumin amino acid sequences to determine possible candidate antigens for new cross-reactive antibodies to be used to detect most fish parvalbumins. Polyclonal rabbit antibodies were raised against parvalbumins from frequently consumed barramundi (Lates calcarifer), basa (Pangasius bocourti), pilchard (Sardinops sagax) and Atlantic salmon (Salmo salar). These were evaluated for cross-reactivity against a panel of 45 fish extracts (raw, heated and canned fish). Anti-barramundi parvalbumin proved to be the most cross-reactive antibody, detecting 87.5% of the 40 species analyzed, followed by anti-pilchard and anti-basa antibody. In contrast the anti-salmon antibody was very specific and only reacted to salmonidae and a few other fish. All analyzed fish species, except mahi mahi, swordfish, yellowfin tuna and all 5 canned fish had parvalbumin detected in raw extracts. However antibody reactivity to many fish was heat liable or susceptible to denaturation, demonstrating that some parvalbumins have most likely conformational epitopes, which lose antibody reactivity after heat treatment. We have demonstrated the generation of highly cross-reactive anti-parvalbumin antibodies that could be used for the detection of allergenic fish parvalbumin in contaminated food products. This cross-reactivity study thus shows processing of fish, especially canning, can have on impact

  4. Managing small-scale commercial fisheries for adaptive capacity: insights from dynamic social-ecological drivers of change in Monterey Bay.

    Directory of Open Access Journals (Sweden)

    Stacy E Aguilera

    Full Text Available Globally, small-scale fisheries are influenced by dynamic climate, governance, and market drivers, which present social and ecological challenges and opportunities. It is difficult to manage fisheries adaptively for fluctuating drivers, except to allow participants to shift effort among multiple fisheries. Adapting to changing conditions allows small-scale fishery participants to survive economic and environmental disturbances and benefit from optimal conditions. This study explores the relative influence of large-scale drivers on shifts in effort and outcomes among three closely linked fisheries in Monterey Bay since the Magnuson-Stevens Fisheries Conservation and Management Act of 1976. In this region, Pacific sardine (Sardinops sagax, northern anchovy (Engraulis mordax, and market squid (Loligo opalescens fisheries comprise a tightly linked system where shifting focus among fisheries is a key element to adaptive capacity and reduced social and ecological vulnerability. Using a cluster analysis of landings, we identify four modes from 1974 to 2012 that are dominated (i.e., a given species accounting for the plurality of landings by squid, sardine, anchovy, or lack any dominance, and seven points of transition among these periods. This approach enables us to determine which drivers are associated with each mode and each transition. Overall, we show that market and climate drivers are predominantly attributed to dominance transitions. Model selection of external drivers indicates that governance phases, reflected as perceived abundance, dictate long-term outcomes. Our findings suggest that globally, small-scale fishery managers should consider enabling shifts in effort among fisheries and retaining existing flexibility, as adaptive capacity is a critical determinant for social and ecological resilience.

  5. Managing small-scale commercial fisheries for adaptive capacity: insights from dynamic social-ecological drivers of change in Monterey Bay.

    Science.gov (United States)

    Aguilera, Stacy E; Cole, Jennifer; Finkbeiner, Elena M; Le Cornu, Elodie; Ban, Natalie C; Carr, Mark H; Cinner, Joshua E; Crowder, Larry B; Gelcich, Stefan; Hicks, Christina C; Kittinger, John N; Martone, Rebecca; Malone, Daniel; Pomeroy, Carrie; Starr, Richard M; Seram, Sanah; Zuercher, Rachel; Broad, Kenneth

    2015-01-01

    Globally, small-scale fisheries are influenced by dynamic climate, governance, and market drivers, which present social and ecological challenges and opportunities. It is difficult to manage fisheries adaptively for fluctuating drivers, except to allow participants to shift effort among multiple fisheries. Adapting to changing conditions allows small-scale fishery participants to survive economic and environmental disturbances and benefit from optimal conditions. This study explores the relative influence of large-scale drivers on shifts in effort and outcomes among three closely linked fisheries in Monterey Bay since the Magnuson-Stevens Fisheries Conservation and Management Act of 1976. In this region, Pacific sardine (Sardinops sagax), northern anchovy (Engraulis mordax), and market squid (Loligo opalescens) fisheries comprise a tightly linked system where shifting focus among fisheries is a key element to adaptive capacity and reduced social and ecological vulnerability. Using a cluster analysis of landings, we identify four modes from 1974 to 2012 that are dominated (i.e., a given species accounting for the plurality of landings) by squid, sardine, anchovy, or lack any dominance, and seven points of transition among these periods. This approach enables us to determine which drivers are associated with each mode and each transition. Overall, we show that market and climate drivers are predominantly attributed to dominance transitions. Model selection of external drivers indicates that governance phases, reflected as perceived abundance, dictate long-term outcomes. Our findings suggest that globally, small-scale fishery managers should consider enabling shifts in effort among fisheries and retaining existing flexibility, as adaptive capacity is a critical determinant for social and ecological resilience.

  6. Different Levels of Hypoxia Tolerance during Early Life History Stages of Key Fish Species from the Northern Benguela Upwelling Ecosystem Inferred from the Comparison of Eco-Physiological Traits

    Science.gov (United States)

    Geist, S. J.; Imam, R. M.; Kunzmann, A.; Ekau, W.

    2016-02-01

    Global change factors such as a pronounced Oxygen Minimum Zone and the shoaling of hypoxic waters are assumed to play a major role in controlling the recruitment of fish stocks in Upwelling Systems by affecting the planktonic early life history stages. Ecological and ecophysiological traits in the larval stages of five key fish species in the Northern Benguela Upwelling System (Sardine, Sardinops sagax; Anchovy, Engraulis encrasicolus; Cape horse mackerel, Trachurus capensis; Cape hake, Merluccius sp.; Pelagic goby, Sufflogobobius bibarbatus) were investigated during the GENUS (Geochemistry and Ecology of the Namibian Upwelling Ecosystem) research project . Analysis of vertical larval distributions in relation to the depth of hypoxic water layers showed gradual interspecific differences, suggesting lower hypoxia tolerance levels of the small pelagics Sardine and Anchovy. Cape horse mackerel juveniles and larvae exhibited very high tolerance levels to short-term hypoxia in respirometry stress experiments, close to the levels of the extremely hypoxia-tolerant Pelagic goby. In the latter two species, we also measured the highest activities of anaerobic enzymes (pyruvate kinase and lactate dehydrogenase) in early and late larval stages, compared to very low activities in Sardine larvae. A higher amount of anaerobic enzymatic activity is related to a higher capacity to break down metabolites that build up during phases of oxygen debt and thus help the larvae to quickly recover from hypoxia exposure. In consequence, a high hypoxia tolerance during their early life stages allows Cape horse mackerel and Pelagic goby to successfully reproduce in an environment characterized by frequent hypoxic events. The low hypoxia tolerance of Sardine larvae, eventually resulting in higher mortality rates, is likely to be an important factor to understand the poor reproductive success and continuing recruitment failures of this formerly dominant fish species of the NBUS during the last

  7. Quantifying mercury isotope dynamics in captive Pacific bluefin tuna (Thunnus orientalis

    Directory of Open Access Journals (Sweden)

    Sae Yun Kwon

    2016-02-01

    Full Text Available Abstract Analyses of mercury (Hg isotope ratios in fish tissues are used increasingly to infer sources and biogeochemical processes of Hg in natural aquatic ecosystems. Controlled experiments that can couple internal Hg isotope behavior with traditional isotope tracers (δ13C, δ15N can improve the applicability of Hg isotopes as natural ecological tracers. In this study, we investigated changes in Hg isotope ratios (δ202Hg, Δ199Hg during bioaccumulation of natural diets in the pelagic Pacific bluefin tuna (Thunnus orientalis; PBFT. Juvenile PBFT were fed a mixture of natural prey and a dietary supplement (60% Loligo opalescens, 31% Sardinops sagax, 9% gel supplement in captivity for 2914 days, and white muscle tissues were analyzed for Hg isotope ratios and compared to time in captivity and internal turnover of δ13C and δ15N. PBFT muscle tissues equilibrated to Hg isotope ratios of the dietary mixture within ∼700 days, after which we observed a cessation in further shifts in Δ199Hg, and small but significant negative δ202Hg shifts from the dietary mixture. The internal behavior of Δ199Hg is consistent with previous fish studies, which showed an absence of Δ199Hg fractionation during Hg bioaccumulation. The negative δ202Hg shifts can be attributed to either preferential excretion of Hg with higher δ202Hg values or individual variability in captive PBFT feeding preferences and/or consumption rates. The overall internal behavior of Hg isotopes is similar to that described for δ13C and δ15N, though observed Hg turnover was slower compared to carbon and nitrogen. This improved understanding of internal dynamics of Hg isotopes in relation to δ13C and δ15N enhances the applicability of Hg isotope ratios in fish tissues for tracing Hg sources in natural ecosystems.

  8. Anchovies to Whales: tracking vertebrate biodiversity in Monterey Bay by metabarcoding environmental DNA (eDNA)

    Science.gov (United States)

    Closek, C. J.; Starks, H.; Walz, K.; Boehm, A. B.; Chavez, F.

    2016-12-01

    The oscillation between the dominance of Sardinops sagax (pacific sardine) and Engraulis mordax (northern anchovy) has been documented in the California Coastal Ecosystem for more than 100 years. These two species are strong drivers of trophic interactions in the region. As part of the Marine Biodiversity Observational Network (MBON) initiative, we used archived filtered seawater samples collected late-summer to mid-fall over a span of 8 years from Monterey Bay, CA to examine the change in marine vertebrate environmental DNA (eDNA). Water samples were collected from a nearshore location in Monterey Bay (C1) during the years of 2008-15. The water was then filtered, and the filter was archived at -80°C. DNA was extracted from the filters, and the 12S rRNA gene present in mitochondrial DNA was PCR amplification using primers designed to amplify 12s rRNA genes from marine vertebrates. The amplicons were subsequently sequenced with an Illumina MiSeq and the data processed using an analysis pipeline for sequence annotation. More than 20 fish genera were noted in the sequences from 2008-12, with Engraulis the dominant fish genus from 2013-15. Anchovy and Megaptera novaeangliae (humpback whale) were present in temporal patterns similar to those noted during visual observations where anchovy and humpback whale were more abundant during the years of 2013-2015 than the other years. This study demonstrates our ability to detect megafauna and fish species that are important to the Monterey Bay ecosystem from coastal water samples and determine community structural differences over time.

  9. Oxygen: a fundamental property regulating pelagic ecosystem structure in the coastal southeastern tropical Pacific.

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    Arnaud Bertrand

    Full Text Available BACKGROUND: In the southeastern tropical Pacific anchovy (Engraulis ringens and sardine (Sardinops sagax abundance have recently fluctuated on multidecadal scales and food and temperature have been proposed as the key parameters explaining these changes. However, ecological and paleoecological studies, and the fact that anchovies and sardines are favored differently in other regions, raise questions about the role of temperature. Here we investigate the role of oxygen in structuring fish populations in the Peruvian upwelling ecosystem that has evolved over anoxic conditions and is one of the world's most productive ecosystems in terms of forage fish. This study is particularly relevant given that the distribution of oxygen in the ocean is changing with uncertain consequences. METHODOLOGY/PRINCIPAL FINDINGS: A comprehensive data set is used to show how oxygen concentration and oxycline depth affect the abundance and distribution of pelagic fish. We show that the effects of oxygen on anchovy and sardine are opposite. Anchovy flourishes under relatively low oxygen conditions while sardine avoid periods/areas with low oxygen concentration and restricted habitat. Oxygen consumption, trophic structure and habitat compression play a fundamental role in fish dynamics in this important ecosystem. CONCLUSIONS/SIGNIFICANCE: For the ocean off Peru we suggest that a key process, the need to breathe, has been neglected previously. Inclusion of this missing piece allows the development of a comprehensive conceptual model of pelagic fish populations and change in an ocean ecosystem impacted by low oxygen. Should current trends in oxygen in the ocean continue similar effects may be evident in other coastal upwelling ecosystems.

  10. Medidas de conservación y ordenación pesquera del jurel Trachurus murphyien el Perú

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    Jorge Zuzunaga

    2013-10-01

    Full Text Available Las pesquerías peruanas como actividades realizadas sobre recursos naturales renovables son reguladas por un marco jurídico, cuyo objetivo es asegurar su conservación y uso sostenible. La Ley General de Pesca (DL N°. 25977 señala que para cada tipo de pesquería y según la situación del recurso explotado debe establecerse un sistema de ordenamiento que concilie el principio de sostenibilidad de los recursos pesqueros o conservación en el largo plazo, con la obtención de los mayores beneficios económicos y sociales. En el ordenamiento pesquero del jurel Trachurus murphyi, las medidas incluyen entre otras, el régimen de acceso constituido por las autorizaciones de incremento de flota y permisos de pesca, que se otorgan solo a los buques cuyas capturas son destinadas únicamente para el consumo humano directo, de acuerdo a lo dispuesto en el Reglamento de Ordenamiento Pesquero (DS N.° 011-2007-PRODUCE. La obligación de destinar los recursos sardina Sardinops sagax, jurel T. murphyiy caballa Scomber japonicus al consumo humano directo rige desde septiembre 2002 (DS N°. 001-2002-PRODUCE. Otras medidas vigentes restringen el tamaño mínimo de malla de las redes, prohíben la captura de ejemplares menores de 31 cm de longitud total, determinan el inicio y cierre de las temporadas de pesca, los límites de captura o cuotas anuales. Estas disposiciones son complementadas por medidas de seguimiento, control y vigilancia para la efectiva conservación y uso sostenido del recurso.

  11. [Fatty acid composition and cholesterol content in naturally canned jurel, sardine, salmon, and tuna].

    Science.gov (United States)

    Romero, N; Robert, P; Masson, L; Luck, C; Buschmann, L

    1996-03-01

    To obtain more information about fatty acid profile and cholesterol content of fat extracted from canned fish in brine habitually consumed in Chile, four different species Jurel (Trachurus murphyi), Sardine (Sardinops sagax), Salmon (Oncorhynchus kisutch) and Tuna (Thunnus alalunga) were analyzed. The GLC of fatty acid methyl esters showed that the main group of fatty acids belongs to polyunsaturated, being omega-3 family the more important. The principal representants were eicosapentaenoic (EPA) and docosahexaenoic acids (DHA), with percentages between 5%-11% and 12%-22% respectively. Omega-6 family was represented mainly by arachidonic acid (AA) with percentages between 2%-4%. Cholesterol content was similar to the values found in other animal origen meats. The figures were between 41-86 mg of cholesterol per 100 g of edible product, Tuna in brine, was the product with the lowest content of cholesterol. The calculated amount of EPA, DHA and total omega-3 fatty acids indicated values between 95-604, 390-1163 and 609-2775 mg respectively per 100 g of edible product. Due these results is important to emphasize the consumption of this type of canned fish in brine, that they really represent a good dietary source of mainly polyunsaturated omega-3 fatty acids. The international recommendations indicate to increase the consumption of fish, due the beneficial effects described in relation with cardiovascular disease, which is the mean cause of death in Chile, country with a wide variety of marine origen foods, but with a contradictory answer about its consumption which is not incorporated in the current diet.

  12. Long-term variation in a central California pelagic forage assemblage

    Science.gov (United States)

    Ralston, Stephen; Field, John C.; Sakuma, Keith M.

    2015-06-01

    A continuous 23 year midwater trawl survey (1990-2012) of the epipelagic forage assemblage off the coast of central California (lat. 36°30‧-38°20‧ N) is described and analyzed. Twenty taxa occurred in ≥ 10% of the 2037 trawls that were completed at 40 distinct station locations. The dominant taxa sampled by the 9.5 mm mesh net included a suite of young-of-the-year (YOY) groundfish, including rockfish (Sebastes spp.) and Pacific hake (Merluccius productus), two clupeoids (Engraulis mordax and Sardinops sagax), krill (Euphausiacea), cephalopods (Doryteuthis opalescens and Octopus sp.), and a variety of mesopelagic species, i.e., Diaphus theta, Tarltonbeania crenularis, "other" lanternfish (Myctophidae), deep-sea smelts (Bathylagidae), and sergestid shrimp. Annual abundance estimates of the 20 taxa were obtained from analysis of variance models, which included year and station as main effects. Principal components analysis of the abundance estimates revealed that 61% of assemblage variance was explained by the first three components. The first component revealed a strong contrast in the abundance of: (a) YOY groundfish, market squid (D. opalescens), and krill with (b) mesopelagics and clupeoids; the second component was associated with long-term trends in abundance. An evaluation of 10 different published oceanographic data sets and CTD data collected during the survey indicated that seawater properties encountered each year were significantly correlated with abundance patterns, as were annual sea-level anomalies obtained from an analysis of AVISO satellite information. A comparison of our findings with several other recent studies of biological communities occurring in the California Current revealed a consistent structuring of forage assemblages, which we conjecture is primarily attributable to large-scale advection patterns in the California Current ecosystem.

  13. Cell kinetics during regeneration in the sponge Halisarca caerulea: how local is the response to tissue damage?

    NARCIS (Netherlands)

    Alexander, B.E.; Achlatis, M.; Osinga, R.; Geest, van der H.G.; Cleutjens, J.P.M.; Schutte, B.; Goeij, de J.M.

    2015-01-01

    Sponges have a remarkable capacity to rapidly regenerate in response to wound infliction. In addition, sponges rapidly renew their filter systems (choanocytes) to maintain a healthy population of cells. This study describes the cell kinetics of choanocytes in the encrusting reef sponge Halisarca cae

  14. Impact of El Niño events on pelagic fisheries in Peruvian waters

    Science.gov (United States)

    Ñiquen, Miguel; Bouchon, Marilú

    2004-03-01

    Using data from stock assesment surveys on pelagic resources during El Niño events of 1972/73, 1982/83, 1997/98, we analyze biological changes on pelagic ecosystems and pelagic fisheries during different stages of development of El Niño phenomenon: emergence, full, final and post-Niño. Results indicate changes in spatial distribution of resources, their concentration and size structure. In anchovy (Engraulis ringens) a decrease in biomass was observed, which was estimated at 1.2 million tons in September 1998, the lowest throughout the 1990s. This resource showed an asymmetric distribution towards the south of Peru. Other pelagic resources increased their biomass during or after Niño events, primarily sardine (Sardinops sagax), jack mackerel (Trachurus murphyi), pacific mackerel (Scomber japonicus), and longnose anchovy (Anchoa nasus). At the end of the El Niño phenomenon we found less productivity but more diversity in the pelagic ecosystem. During the 1997/98 El Niño, the diversity index (Manual de Ecologia, 1a Edition, Editorial Trillas, Mexico, 267pp) increased from 0.87 to 1.23-1.70. In both the emergence stage and fully developed stages of El Niño we found large numbers of sardine and longnose anchovy present simultaneously. Size structure of sardine, jack mackerel, and pacific mackerel showed an increase in juveniles. Anchovy during El Niño showed a single modal group composed of adults, but the post-Niño phase indicated an increase in juveniles with an average length of 6-7 cm. In El Niño conditions spawning among anchovy was low, but among sardine and pacific mackerel it was high. We observed, for the first time during full spawning, juvenile sardines with a total length of 18-20 cm. The anchovy spawning season during the post-Niño phase was considerably lengthened, from April to December 1998. Drastic change occurred in fisheries when monospecific fisheries, based on anchovy before El Niño, became multispecific fisheries based on sardine, jack

  15. Identification of Iridoids in Edible Honeysuckle Berries (Lonicera caerulea L. var. kamtschatica Sevast. by UPLC-ESI-qTOF-MS/MS

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    Alicja Z. Kucharska

    2016-09-01

    Full Text Available Iridoid profiles of honeysuckle berry were studied. Compounds were identified by ultra-performance liquid chromatography coupled with electrospray ionization mass spectrometry UPLC-ESI-qTOF-MS/MS in positive and negative ions mode. The MS fragmentation pathways of detected iridoid glycosides were also studied in both modes. In the negative ESI mass spectra, iridoids with a methyl ester or lactone structure have preferentially produced adduct [M + HCOOH − H]− ions. However, protonated ions of molecular fragments, which were released by glycosidic bond cleavage and following fragmentation of aglycone rings, were more usable for iridoid structure analysis. In addition, the neutral losses of H2O, CO, CO2, CH3OH, acetylene, ethenone and cyclopropynone have provided data confirming the presence of functional substituents in the aglycone. Among the 13 iridoids, 11 were identified in honeysuckle berries for the first time: pentosides of loganic acid (two isomers, pentosides of loganin (three isomers, pentosyl sweroside, and additionally 7-epi-loganic acid, 7-epi-loganin, sweroside, secologanin, and secoxyloganin. The five pentoside derivatives of loganic acid and loganin have not been previously detected in the analyzed species. Honeysuckle berries are a source of iridoids with different structures, compounds that are rarely present in fruits.

  16. Comparison of isometric contractile properties of the tongue muscles in three species of frogs, Litoria caerulea, Dyscophus guinetti, and Bufo marinus.

    Science.gov (United States)

    Peters, S E; Nishikawa, K C

    1999-11-01

    Previous studies show that anurans feed in at least three different ways. Basal frogs have a broad tongue that shortens during protraction and emerges only a short distance from the mouth. Some frogs have long, narrow tongues that elongate dramatically due primarily to inertia from mouth opening, which is transferred to the tongue. A few species have a hydrostatic mechanism that produces tongue elongation during protraction. This functional diversity occurs among frogs that share the same two pairs of tongue muscles. Our study compares the isometric contractile properties of these tongue muscles among three frog species that represent each feeding mechanism. Nerves to the paired protractors and retractors were stimulated electrically in each species to record the force properties, contraction speeds, and fatigabilites of these muscles. Few differences were found in the isometric contractile properties of tongue muscles, and the greatest differences were found in the retractors, not the protractors. We propose that the unique arrangement of the tongue muscles in frogs results in a retractor that may also be coactivated with the protractor in order to produce normal tongue protraction. Inertial effects from body, head, and jaw movements, along with clear differences that we found in passive resistance of the tongues to elongation, may explain much of the behavioral variation in tongue use among species. Copyright 1999 Wiley-Liss, Inc.

  17. 蓝靛果忍冬优良品种的引进及筛选%Introducion and Selection of Excellent Varieties of Lonicera caerulea

    Institute of Scientific and Technical Information of China (English)

    赵利群; 姜思佳; 焦丽; 韩曦; 李滨胜

    2015-01-01

    Twelve varieties of Loniceracaerulea were comprehensively evaluated by using membership function.Re-sult shows that Blue Velvet and Blue Forest performed outstanding,reflecting plant ecology adaptation,reproductive capacity & excellent berry quality.Smokey Blue,Blue Sky,Blue Belle & Blue Nova are overall performance well. They all can be used in production in large area as cultivars.Blue Moon and Blue Pacific is performed in the middle. They can be reserved and used as crossbreeding resources.Kamchatka,Berry Blue,Blue Lightning & Blue bird are not recommended to be applied in business and are suitable to be used in enriching variety of resources nursery.%利用隶属函数法对蓝靛果忍冬12个引进品种进行综合评定,结果显示:Blue Velvet和Blue Forest表现最为突出,体现了较强的生态适应性、繁殖能力和优良的果实品质;Smokey Blue、Blue Sky、Blue Belle和Blue Nova综合表现也比较好,均可作为主栽品种在生产上大面积推广应用;Blue Moon和Blue Pacific表现居中,可视情况采取相应农艺措施进行品种改良,或作为杂交育种资源将其优势性状加以保留、利用;Kamchatka、Berry Blue、Blue Lightning和Blue bird则适合用于丰富资源圃品种数量,不建议商业利用。

  18. Identification of Iridoids in Edible Honeysuckle Berries (Lonicera caerulea L. var. kamtschatica Sevast.) by UPLC-ESI-qTOF-MS/MS

    OpenAIRE

    Alicja Z. KUCHARSKA; Izabela Fecka

    2016-01-01

    Iridoid profiles of honeysuckle berry were studied. Compounds were identified by ultra-performance liquid chromatography coupled with electrospray ionization mass spectrometry UPLC-ESI-qTOF-MS/MS in positive and negative ions mode. The MS fragmentation pathways of detected iridoid glycosides were also studied in both modes. In the negative ESI mass spectra, iridoids with a methyl ester or lactone structure have preferentially produced adduct [M + HCOOH − H]− ions. However, protonated ions of ...

  19. Identification of Iridoids in Edible Honeysuckle Berries (Lonicera caerulea L. var. kamtschatica Sevast.) by UPLC-ESI-qTOF-MS/MS.

    Science.gov (United States)

    Kucharska, Alicja Z; Fecka, Izabela

    2016-09-01

    Iridoid profiles of honeysuckle berry were studied. Compounds were identified by ultra-performance liquid chromatography coupled with electrospray ionization mass spectrometry UPLC-ESI-qTOF-MS/MS in positive and negative ions mode. The MS fragmentation pathways of detected iridoid glycosides were also studied in both modes. In the negative ESI mass spectra, iridoids with a methyl ester or lactone structure have preferentially produced adduct [M + HCOOH - H](-) ions. However, protonated ions of molecular fragments, which were released by glycosidic bond cleavage and following fragmentation of aglycone rings, were more usable for iridoid structure analysis. In addition, the neutral losses of H₂O, CO, CO₂, CH₃OH, acetylene, ethenone and cyclopropynone have provided data confirming the presence of functional substituents in the aglycone. Among the 13 iridoids, 11 were identified in honeysuckle berries for the first time: pentosides of loganic acid (two isomers), pentosides of loganin (three isomers), pentosyl sweroside, and additionally 7-epi-loganic acid, 7-epi-loganin, sweroside, secologanin, and secoxyloganin. The five pentoside derivatives of loganic acid and loganin have not been previously detected in the analyzed species. Honeysuckle berries are a source of iridoids with different structures, compounds that are rarely present in fruits.

  20. Preservación y abundancia de escamas de peces en sedimentos del margen continental de Chile (21-36° S Fish scale preservation and abundance in sediments from the continental margin off Chile (21-36° S

    Directory of Open Access Journals (Sweden)

    JAVIER A DÍAZ-OCHOA

    2008-12-01

    Full Text Available Con el objetivo de evaluar la relación entre la preservación de escamas de peces y las variaciones en las condiciones redox en sedimentos del margen continental de Chile, este trabajo presenta recuentos de escamas de peces y concentraciones normalizadas de elementos redox sensibles (Mo/Al, S/Al, Fe/Al en ocho testigos de sedimento recolectados en la zona de minimo oxígeno frente a Chile (Iquique: 20°15' S, bahía de Mejillones: 23° S y Concepción: 36° S. En el norte de Chile (Iquique y Mejillones predominan las escamas de anchoveta (Engraulis ringens y de peces de la familia Myctophidae (media = 90 y 120 escamas 1.000 cm-3, respectivamente mientras que en Chile centro-sur (Concepción son más abundantes las escamas de jurel (Trachurus murphy; media = 140 escamas 1.000 cm-3. La abundancia de escamas de merluza común (Merluccius gayi gayi y de sardina (Sardinops sagax es aproximadamente un orden de magnitud más baja que la de anchoveta o jurel. En general, los valores más altos y los rangos más amplios de variación en las razones Mo/Al, S/Al y Fe/Al se encuentran en Mejillones (Mo/Al ~0,8-12 mg g-1, S/Al 0,2-4,6 g g-1, Fe/Al 0,3-0,7 g g-1 seguidos por Iquique (Mo/Al -0,2-1,8; S/Al 0,2-0,7, Fe/Al 0,5-0,8, mientras que Concepción revela valores más bajos y poco variables (Mo/Al ~0,07, S/Al ~0,15 y Fe/Al ~0,5. La razón Mo/Al, utilizada como indicador de paleo-oxigenación, permite inferir condiciones reductoras relativamente más intensas en los sedimentos de la Bahía de Mejillones e Iquique que en Concepción. En las tres localidades de muestreo se evidencia una asociación estadísticamente significativa entre la abundancia de escamas de anchoveta y el logaritmo de la razón Mo/Al (r²= 0,46; P 1 mg g-1.The relationship between fish scale preservation and variations in the sediment redox conditions on Chile's continental shelf are evaluated herein through fish scale counts and normalized concentrations of redox sensitive elements

  1. Trends in spatio-temporal distribution of Peruvian anchovy and other small pelagic fish biomass from 1966-2009 Tendencias espacio-temporales en la distribución de la biomasa de anchoveta peruana y de otros peces pelágicos pequenos entre 1966 y 2009

    Directory of Open Access Journals (Sweden)

    Mariano Gutiérrez

    2012-09-01

    Full Text Available Changes in abundance and distribution of anchovy and other species of pelagic fish of the Northern Humboldt Current System (NHCS are driven by environmental forcing variations in different time and spatial scales between the coastal 'cold' ecosystem and the 'warm' oceanic one. Data to study these fluctuations have come mostly from the fishery to show how anchovy (Engraulis ringens increases when sardine (Sardinops sagax declines and vice versa. However, using acoustic data on latitudinal biomass we show that other species as mackerel (Scomber japonicus and jack mackerel (Trachurus murphyi also follow the same opposed trend, then the fishery data hides the true dimension of the balance of abundance among species. Based on Hovmoller diagrams we scrutinized the changes in interannual latitudinal acoustic biomass, landings and influence of El Nino events from 1966 to 2009 in order to describe: 1 how the anchovy decadal distribution pattern moved from south to north since the 1960's; 2 how there have been produced concomitant changes in the latitudinal abundance and distribution of other species such as sardine, jack mackerel and mackerel before, during and after El Nino events; and 3 what was the overall effect of the succession of El Nino events on all these pelagic species. We concluded that: a every El Nino event has had an effect on the expansion or contraction of pelagic species distribution and abundance, with different latitudinal effects; and b the El Nino 1997-98 did not trigger but accelerated a decline phase on the abundance of sardine, jack mackerel and mackerel by a reduction of their ideal habitat due to an expansion of the coastal ecosystem caused by a shallower location of the upper limit of the Oxygen Minimum Zone (OMZ These findings observed using past data might be taken into consideration for fishery management purposes when considering future scenarios.Los cambios en la abundancia y distribución de anchoveta y de otras especies

  2. Biogeochemical and ecological impacts of boundary currents in the Indian Ocean

    Science.gov (United States)

    Hood, Raleigh R.; Beckley, Lynnath E.; Wiggert, Jerry D.

    2017-08-01

    , though local wind forcing can lead to transient near shore current reversals and localized coastal upwelling. The poleward direction of this eastern boundary current is unique. Due to its high kinetic energy the Leeuwin Current sheds anomalous, relatively high chlorophyll, warm-core, downwelling eddies that transport coastal diatom communities westward into open ocean waters. Variations in the Leeuwin transport and eddy generation impact many higher trophic level species including the recruitment and fate of rock lobster (Panulirus cygnus) larvae. In contrast, the transport of the Agulhas Current is very large, with sources derived from the Mozambique Channel, the East Madagascar Current and the southwest Indian Ocean sub-gyre. Dynamically, the Agulhas Current is upwelling favorable; however, the spatial distribution of prominent surface manifestations of upwelling is controlled by local wind and topographic forcing. Meanders and eddies in the Agulhas Current propagate alongshore and interact with seasonal changes in the winds and topographic features. These give rise to seasonally variable localized upwelling and downwelling circulations with commensurate changes in primary production and higher trophic level responses. Due to the strong influence of the Agulhas Current, many neritic fish species in southeast Africa coastal waters have evolved highly selective behaviors and reproductive patterns for successful retention of planktonic eggs and larvae. For example, part of the Southern African sardine (Sardinops sagax) stock undergoes a remarkable northward migration enhanced by transient cyclonic eddies in the shoreward boundary of the Agulhas Current. There is evidence from the paleoceanographic record that these currents and their biogeochemical and ecological impacts have changed significantly over glacial to interglacial timescales. These changes are explored as a means of providing insight into the potential impacts of climate change in the Indian Ocean.

  3. Effects of Climate Change on Sardine Productivity in the California Current System

    Science.gov (United States)

    Baumgartner, T. R.; Auad, G.; Miller, A. J.

    2007-05-01

    The Pacific sardine (Sardinops sagax caeruleus) is one of several coastal pelagic, planktivorous species of fish that provide important trophic links within the ecosystems of the major eastern and western boundary currents. Significant and persistent change in sardine productivity has occurred in the California Current over interdecadal periods in response to reorganization of basin-wide, ocean-atmosphere circulation. Less extreme, but still significant changes in sardine productivity are associated with interannual to decadal-scale climate variability. A precipitous decline of the sardine population began in the mid-1940s with a shift in climate leading to cooling of the California Current system. While the decline, and ultimately the collapse of the population, was exacerbated by intensive fishing, the sardine also suffered a severe reduction in productivity with the southward contraction of favorable thermal habitat that led to restriction of the population to the waters off Southern California and Baja California. This southward displacement resulted in geographic separation of the population from the region off central and northern California that is characterized by significantly higher concentrations of zooplankton that supported the previous levels of success in spawning and larval development. The climate shift in 1976-77 led to the recovery of the population and extension of its range of distribution northwards into the waters off British Columbia. The relation of reproductive success of the sardine population to interannual and decadal climate change was examined for the period 1982-2005 using a suite of seasonal indices representing climate processes and habitat conditions (including zooplankton food levels) occurring through the different stages in the sardine life cycle. We used both stepwise regression and EOF analyses to determine the association between levels of recruitment success and seasonal indices of the Pacific Decadal Oscillation, Ekman

  4. Effects of Ocean Climate on Transboundary Movement of Coastal Pelagic Resources Between the EEZs of Mexico and the United States

    Science.gov (United States)

    Baumgartner, T. R.; Garcia, J.; Sanchez, C.; Lo, N. C.; Charter, R.

    2007-05-01

    Interannual to multidecadal changes in ocean climate directly impact access to transboundary coastal pelagic resources between fisheries operating in U.S. and Mexican waters. This study provides a preliminary analysis of the scale of year-to-year shifts in the distribution of the Pacific sardine (Sardinops sagax caeruleus) with data from 2002 and 2003. One of the purposes of this initiative is to provide a template for collaborative research to guide regional policy development for responsible and sustainable utilization of the shared resource. This work is based on coordinated quarterly ocean surveys run by Mexican (the IMECOCAL program=Investigaciones Mexicanas de la Corriente de California) and U.S. scientists (the CalCOFI program=California Cooperative Oceanic Fisheries Investigations) allowing us to evaluate the annual state of the pelagic ecosystem from northern California to southern Baja California. The subject of this study is the "subarctic stock" of the Pacific sardine which is centered off California in the U.S. and extends southwards to the region off central Baja California. Estimates of sardine biomass in U.S. and Mexican waters, based on the rates of egg production measured during the IMECOCAL and CalCOFI surveys of April 2002 and April 2003, show order of magnitude differences in the relative proportions of biomass in the Mexican EEZ that is associated with the contrasts in ocean climate resulting from the regional effects of El Niño during April 2003. Results indicate a significant northward shift of the sardine stock off Mexico during 2003: we estimate that approximately 20 percent of the total biomass of the stock was located in the Mexican EEZ during spring of 2002 while the shift in ocean climate resulted in the presence of only 2 percent of the biomass of the stock in Mexican waters during April, 2003. A second, more southerly sardine stock extended from southern to central Baja California in April, 2003, but it was out of reach of the fleet

  5. Download this PDF file

    African Journals Online (AJOL)

    spamer

    which feeds primarily on the large populations of sardine. Sardinops .... 1930 and 1971, with the bulk of the construction completed by .... guanay cormorants were best fitted by the equation ..... Clearly, the population dynamics of seabirds in ...

  6. The effect of dominant species on numbers and agę structure of Iris sibirica L. population on blue moor-grass meadow in southern Poland

    National Research Council Canada - National Science Library

    Kinga Kostrakiewicz

    2011-01-01

    Two populations of Iris sibirica, a clonal species protected by law in Poland, occurring in patches of Molinietum caeruleae, of similar floristic composition although with different dominant species, were studied...

  7. The influence of neighbouring species on ecological variation of the selected subpopulations of Iris sibirica L

    National Research Council Canada - National Science Library

    Kinga Kostrakiewicz-Gierałt

    2013-01-01

    Ecological variation of the selected subpopulations of Iris sibirica L. were studied in the years 2011-2012, in the abandoned patches of Molinietum caeruleae dominated by small meadow species (Patch I), macroforbs (Patch II...

  8. 响应面试验优化超声波辅助提取蓝靛果多酚工艺及其抗氧化活性%Optimization of Ultrasonic-Assisted Extraction of Polyphenols from Haskap Berries (Lonicera caerulea L.) Using Response Surface Methodology and Their Antioxidant Capacity

    Institute of Scientific and Technical Information of China (English)

    李斌; 雷月; 孟宪军; 矫馨瑶; 高凝轩; 赵悦; 张家臣

    2015-01-01

    选用长白山的蓝靛果忍冬冻果作为原料,以蓝靛果多酚提取量为指标,在单因素试验的基础上,通过三因素三水平的响应面优化试验,得出了蓝靛果多酚最佳的提取工艺条件为:料液比1∶25 (g/mL)、提取温度40℃、乙醇体积分数50%、超声功率500W、提取时间90 min.在此条件下,蓝靛果多酚提取量达7.52 mg/g.此外,通过体外抗氧化能力评价方法得出:蓝靛果多酚具有较强的清除超氧阴离子自由基、2,2'-联氨-双-(3-乙基苯并噻唑啉-6-磺酸)二胺盐自由基(2,2'-azino-bis(3-ehtylbenzothiazoline-6-sulfonic acid) diammonium salt radical,ABTS+·)、1,1-二苯基-2-三硝基苯肼(1,1-diphenyl-2-picrylhydrazyl,DPPH)自由基的能力.由相关性分析结果可知,蓝靛果多酚含量与超氧阴离子自由基、DPPH自由基清除能力之间呈极显著正相关(P<0.01),与ABTS+·清除能力间呈显著正相关(P<0.05).

  9. Epidemiological studies of Schistosoma mattheei infections in cattle in the highveld and lowveld communal grazing areas of Zimbabwe

    DEFF Research Database (Denmark)

    Pfukenyi, D.M.; Mukaratirwa, S.; Willingham, Arve Lee

    2006-01-01

    there were peaks between March / May and September / November. The mean num ber of snails collected was positively correlated with the water plants Nymphaea caerulea and Typha species. Overall, 2.5 % of B. globosus were shedding Schistosoma cercariae. In the highveld, 2.8 % of B. globosus were infected...

  10. Applying an Avian Index of Biological Integrity to Assess and Monitor Arid and Semi-arid Riparian Ecosystems

    Science.gov (United States)

    2009-01-01

    Introduced Cliff Mourning Dove Zenaida macroura Resident Granivore Ground Non-Dependent Native Tree Common Ground-Dove Columbina passerina Resident...Resident Omnivore Ground Non-Dependent Native Ground Chipping Sparrow Spizella passerina Resident Omnivore Ground Non-Dependent Native Coniferous Tree...Blue Grosbeak Guiraca caerulea Neotropical Omnivore Ground Obligate Native Shrub Lazuli Bunting Passerina amoena Neotropical Omnivore Ground PIF 1

  11. Diversity and abundance of ammonia-oxidizing

    NARCIS (Netherlands)

    Cardoso, J.F.M.F.; van Bleijswijk, J.D.L.; Witte, H.; van Duyl, F.C.

    2013-01-01

    We analysed the diversity and abundance of ammonia-oxidizing Archaea (AOA) and Bacteria (AOB) in the shallow warm-water sponge Halisarca caerulea and the deep cold-water sponges Higginsia thielei and Nodastrella nodastrella. The abundance of AOA and AOB was analysed using catalyzed reporter

  12. Diurnal and seasonal variation of carbon dioxide exchange from a former true raised bog.

    NARCIS (Netherlands)

    Nieveen, J.P.; Jacobs, C.M.J.; Jacobs, A.F.G.

    1998-01-01

    Carbon dioxide exchange was measured, using the eddy covariance technique, during a one and a half year period in 1994 and 1995. The measurements took place over a former true raised bog, characterized by a shallow peat layer and a vegetation dominated by Molinia caerulea. The growing season extende

  13. Farmer decision making and its effect on subalpine grassland succession in the Giant Mts., Czech Republic

    Directory of Open Access Journals (Sweden)

    Michal Hejcman

    2011-01-01

    Full Text Available Nitrogen deposition is generally considered as a main reason for many recent plant expansions, but management changes are often not taken into account. Understanding the effects of agriculture management in the past can be decisive in the explanation of plant expansions at present. In order to understand the spread of Molinia caerulea and Calamagrostis villosa into Nardus stricta dominated subalpine grassland in the Giant Mts. (Krkonoše, Karkonosze, we undertook an experiment to explain farmer decision making and we discussed its effect on grassland succession. We measured mowing productivity, yields, biomass quality and nutrient removal in N. stricta, M. caerulea, and C. villosa dominated swards. With regard to defoliation management performed on the subalpine grasslands for at least 500 years and cancelled after the Second World War, we found the following results and conclusions. 1. Mowing productivity, yield and forage quality were lowest in the N. stricta sward, therefore farmers preferred to harvest C. villosa and M. caerulea stands if they had the possibility to select a sward for mowing. 2. Removal of all nutrients was the lowest in the N. stricta sward. With respect to these facts, the competitive advantage of N. stricta is obvious under long-term scything without fertilization. Consequently, the recent increase of defoliation sensitive species M. caerulea and C. villosa above the timber line must be evaluated with respect to both: termination of agricultural activities and recent nitrogen deposition.

  14. Diversity and abundance of ammonia-oxidizing

    NARCIS (Netherlands)

    Cardoso, J.F.M.F.; van Bleijswijk, J.D.L.; Witte, H.; van Duyl, F.C.

    2013-01-01

    We analysed the diversity and abundance of ammonia-oxidizing Archaea (AOA) and Bacteria (AOB) in the shallow warm-water sponge Halisarca caerulea and the deep cold-water sponges Higginsia thielei and Nodastrella nodastrella. The abundance of AOA and AOB was analysed using catalyzed reporter depositi

  15. Diversity and abundance of ammonia-oxidizing

    NARCIS (Netherlands)

    Cardoso, J.F.M.F.; van Bleijswijk, J.D.L.; Witte, H.; van Duyl, F.C.

    2013-01-01

    We analysed the diversity and abundance of ammonia-oxidizing Archaea (AOA) and Bacteria (AOB) in the shallow warm-water sponge Halisarca caerulea and the deep cold-water sponges Higginsia thielei and Nodastrella nodastrella. The abundance of AOA and AOB was analysed using catalyzed reporter depositi

  16. Expansion of invasive species on ombrotrophic bogs: desiccation or high N deposition?

    NARCIS (Netherlands)

    Tomassen, H.B.M.; Smolders, A.J.P.; Limpens, J.; Lamers, L.P.M.; Roelofs, J.G.M.

    2004-01-01

    1. In many ombrotrophic bog areas the invasion of grass (e.g. Molinia caerulea) and tree (e.g. Betula pubescens) species has become a major problem. We investigated whether the invasion of such species is due to high atmospheric nitrogen (N) deposition by conducting a fertilization experiment. 2. Th

  17. Does interspecific competition alter effects of early season ozone exposure on plants from wet grasslands? Results of a three-year experiment in open-top chambers

    NARCIS (Netherlands)

    Tonneijck, A.E.G.; Franzaring, J.; Brouwer, G.; Metselaar, K.; Dueck, T.A.

    2004-01-01

    Chronic effects of ozone on wet grassland species early in the growing season might be altered by interspecific competition. Individual plants of Holcus lanatus, Lychnis flos-cuculi, Molinia caerulea and Plantago lanceolata were grown in monocultures and in mixed cultures with Agrostis capillaris. M

  18. Integrating phylogenetic and population genetic analyses of multiple loci to test species divergence hypotheses in Passerina buntings.

    Science.gov (United States)

    Carling, Matt D; Brumfield, Robb T

    2008-01-01

    Phylogenetic and population genetic analyses of DNA sequence data from 10 nuclear loci were used to test species divergence hypotheses within Passerina buntings, with special focus on a strongly supported, but controversial, sister relationship between Passerina amoena and P. caerulea inferred from a previous mitochondrial study. Here, a maximum-likelihood analysis of a concatenated 10-locus data set, as well as minimize-deep-coalescences and maximum-likelihood analyses of the locus-specific gene trees, recovered the traditional sister relationship between P. amoena and P. cyanea. In addition, a more recent divergence time estimate between P. amoena and P. cyanea than between P. amoena and P. caerulea provided evidence for the traditional sister relationship. These results provide a compelling example of how lineage sorting stochasticity can lead to incongruence between gene trees and species trees, and illustrate how phylogenetic and population genetic analyses can be integrated to investigate evolutionary relationships between recently diverged taxa.

  19. Final Environmental Impact Statement (EIS) for the Space Nuclear Thermal Propulsion (SNTP) Program. Sanitized Version. Appendices

    Science.gov (United States)

    1991-09-19

    Kinglet Regulus calendula Blue Gray Gnatcatcher Polioptila caerulea Black Tailed Gnatcatcher Polioptila melanusa West=rn Bluebird Sialia mexicana ...east of the roac should be collected. A 1 x 2 meter test pit is also recomended as this large site ,as the potential of containing subsurface culturA ... Cultura .. Resources along ’he Mid Valley Access Boad between Mine Mountain Junction and 16-02 Road. Date: 26 November 1983 Tvelve sites along the Mid

  20. Salmonellosis in a captive heron colony

    Science.gov (United States)

    Locke, L.N.; Ohlendorf, H.M.; Shillinger, R.B.; Jareed, T.

    1974-01-01

    Salmonellosis caused by Salmonella typhimurium was one of several factors responsible for losses among young herons being held at the Patuxent Wildlife Research Center. The infection was demonstrated in five black-crowned night herons (Nycticorax nycticorax), three common egrets (Casmerodius albus), two little blue herons (Florida caerulea), one cattle egret (Bubulcus ibis), one snowy egret (Leucophoyx thula) and one Louisiana heron (Hydranassa tricolor). The disease was characterized by emaciation, focal liver necrosis, and frequently by a caseo-necrotic enteritis.

  1. Mitochondrial Genomics and Northwestern Atlantic Population Genetics of Marine Annelids

    Science.gov (United States)

    2005-09-01

    pulmonate gastropods Albinaria caerulea and Cepaea nemoralis because they were more easily aligned than other gastropods, and the cephalopod Loligo...disease clustering and a generalized regression approach. Cancer Research, 27, 209-220. Marko PB (2004) ’What’s larvae got to do with it?’ Disparate...The detection of disease clustering and a generalized regression approach. Cancer Research, 27, 209-220. Moberg PE, Burton RS (2000) Genetic

  2. Environmental Assessment Addressing FTFA07-1174, Repair Approach Lighting System at the North End of Runway 01/19 at Eglin AFB, Florida

    Science.gov (United States)

    2013-05-01

    Yaupon Ilex vomitoria Birds Bobwhite quail Colinus virginianus Great horned owl Bubo virginianus Red-cockaded woodpecker1 P. borealis Reptiles and...Chamaecyparis thyoides Bird Little blue heron Egretta caerulea Fish Okaloosa darter1 E. okaloosae Reptiles and Amphibians American alligator...government-to-government basis, and Native American tribes have the right to self-government and self-determination. EO 13287, Preserve America (March 3

  3. Piscivory in a Miocene Cetotheriidae of Peru: first record of fossilized stomach content for an extinct baleen-bearing whale.

    Science.gov (United States)

    Collareta, Alberto; Landini, Walter; Lambert, Olivier; Post, Klaas; Tinelli, Chiara; Di Celma, Claudio; Panetta, Daniele; Tripodi, Maria; Salvadori, Piero A; Caramella, Davide; Marchi, Damiano; Urbina, Mario; Bianucci, Giovanni

    2015-12-01

    Instead of teeth, modern mysticetes bear hair-fringed keratinous baleen plates that permit various bulk-filtering predation techniques (from subsurface skimming to lateral benthic suction and engulfment) devoted to various target prey (from small invertebrates to schooling fish). Current knowledge about the feeding ecology of extant cetaceans is revealed by stomach content analyses and observations of behavior. Unfortunately, no fossil stomach contents of ancient mysticetes have been described so far; the investigation of the diet of fossil baleen whales, including the Neogene family Cetotheriidae, remains thus largely speculative. We report on an aggregate of fossil fish remains found within a mysticete skeleton belonging to an undescribed late Miocene (Tortonian) cetotheriid from the Pisco Formation (Peru). Micro-computed tomography allowed us to interpret it as the fossilized content of the forestomach of the host whale and to identify the prey as belonging to the extant clupeiform genus Sardinops. Our discovery represents the first direct evidence of piscivory in an ancient edentulous mysticete. Since among modern mysticetes only Balaenopteridae are known to ordinarily consume fish, this fossil record may indicate that part of the cetotheriids experimented some degree of balaenopterid-like engulfment feeding. Moreover, this report corresponds to one of the geologically oldest records of Sardinops worldwide, occurring near the Tortonian peak of oceanic primary productivity and cooling phase. Therefore, our discovery evokes a link between the rise of Cetotheriidae; the setup of modern coastal upwelling systems; and the radiation of epipelagic, small-sized, schooling clupeiform fish in such highly productive environments.

  4. Piscivory in a Miocene Cetotheriidae of Peru: first record of fossilized stomach content for an extinct baleen-bearing whale

    Science.gov (United States)

    Collareta, Alberto; Landini, Walter; Lambert, Olivier; Post, Klaas; Tinelli, Chiara; Di Celma, Claudio; Panetta, Daniele; Tripodi, Maria; Salvadori, Piero A.; Caramella, Davide; Marchi, Damiano; Urbina, Mario; Bianucci, Giovanni

    2015-12-01

    Instead of teeth, modern mysticetes bear hair-fringed keratinous baleen plates that permit various bulk-filtering predation techniques (from subsurface skimming to lateral benthic suction and engulfment) devoted to various target prey (from small invertebrates to schooling fish). Current knowledge about the feeding ecology of extant cetaceans is revealed by stomach content analyses and observations of behavior. Unfortunately, no fossil stomach contents of ancient mysticetes have been described so far; the investigation of the diet of fossil baleen whales, including the Neogene family Cetotheriidae, remains thus largely speculative. We report on an aggregate of fossil fish remains found within a mysticete skeleton belonging to an undescribed late Miocene (Tortonian) cetotheriid from the Pisco Formation (Peru). Micro-computed tomography allowed us to interpret it as the fossilized content of the forestomach of the host whale and to identify the prey as belonging to the extant clupeiform genus Sardinops. Our discovery represents the first direct evidence of piscivory in an ancient edentulous mysticete. Since among modern mysticetes only Balaenopteridae are known to ordinarily consume fish, this fossil record may indicate that part of the cetotheriids experimented some degree of balaenopterid-like engulfment feeding. Moreover, this report corresponds to one of the geologically oldest records of Sardinops worldwide, occurring near the Tortonian peak of oceanic primary productivity and cooling phase. Therefore, our discovery evokes a link between the rise of Cetotheriidae; the setup of modern coastal upwelling systems; and the radiation of epipelagic, small-sized, schooling clupeiform fish in such highly productive environments.

  5. Germ tube mediated invasion of Batrachochytrium dendrobatidis in amphibian skin is host dependent.

    Directory of Open Access Journals (Sweden)

    Pascale Van Rooij

    Full Text Available Batrachochytrium dendrobatidis (Bd is the causative agent of chytridiomycosis, a fungal skin disease in amphibians and driver of worldwide amphibian declines.We focussed on the early stages of infection by Bd in 3 amphibian species with a differential susceptibility to chytridiomycosis. Skin explants of Alytes muletensis, Litoria caerulea and Xenopus leavis were exposed to Bd in an Ussing chamber for 3 to 5 days. Early interactions of Bd with amphibian skin were observed using light microscopy and transmission electron microscopy. To validate the observations in vitro, comparison was made with skin from experimentally infected frogs. Additional in vitro experiments were performed to elucidate the process of intracellular colonization in L. caerulea. Early interactions of Bd with amphibian skin are: attachment of zoospores to host skin, zoospore germination, germ tube development, penetration into skin cells, invasive growth in the host skin, resulting in the loss of host cell cytoplasm. Inoculation of A. muletensis and L. caerulea skin was followed within 24 h by endobiotic development, with sporangia located intracellularly in the skin. Evidence is provided of how intracellular colonization is established and how colonization by Bd proceeds to deeper skin layers. Older thalli develop rhizoid-like structures that spread to deeper skin layers, form a swelling inside the host cell to finally give rise to a new thallus. In X. laevis, interaction of Bd with skin was limited to an epibiotic state, with sporangia developing upon the skin. Only the superficial epidermis was affected. Epidermal cells seemed to be used as a nutrient source without development of intracellular thalli. The in vitro data agreed with the results obtained after experimental infection of the studied frog species. These data suggest that the colonization strategy of B. dendrobatidis is host dependent, with the extent of colonization most likely determined by inherent

  6. Germ tube mediated invasion of Batrachochytrium dendrobatidis in amphibian skin is host dependent.

    Science.gov (United States)

    Van Rooij, Pascale; Martel, An; D'Herde, Katharina; Brutyn, Melanie; Croubels, Siska; Ducatelle, Richard; Haesebrouck, Freddy; Pasmans, Frank

    2012-01-01

    Batrachochytrium dendrobatidis (Bd) is the causative agent of chytridiomycosis, a fungal skin disease in amphibians and driver of worldwide amphibian declines.We focussed on the early stages of infection by Bd in 3 amphibian species with a differential susceptibility to chytridiomycosis. Skin explants of Alytes muletensis, Litoria caerulea and Xenopus leavis were exposed to Bd in an Ussing chamber for 3 to 5 days. Early interactions of Bd with amphibian skin were observed using light microscopy and transmission electron microscopy. To validate the observations in vitro, comparison was made with skin from experimentally infected frogs. Additional in vitro experiments were performed to elucidate the process of intracellular colonization in L. caerulea. Early interactions of Bd with amphibian skin are: attachment of zoospores to host skin, zoospore germination, germ tube development, penetration into skin cells, invasive growth in the host skin, resulting in the loss of host cell cytoplasm. Inoculation of A. muletensis and L. caerulea skin was followed within 24 h by endobiotic development, with sporangia located intracellularly in the skin. Evidence is provided of how intracellular colonization is established and how colonization by Bd proceeds to deeper skin layers. Older thalli develop rhizoid-like structures that spread to deeper skin layers, form a swelling inside the host cell to finally give rise to a new thallus. In X. laevis, interaction of Bd with skin was limited to an epibiotic state, with sporangia developing upon the skin. Only the superficial epidermis was affected. Epidermal cells seemed to be used as a nutrient source without development of intracellular thalli. The in vitro data agreed with the results obtained after experimental infection of the studied frog species. These data suggest that the colonization strategy of B. dendrobatidis is host dependent, with the extent of colonization most likely determined by inherent characteristics of the host

  7. Marine molluscs as biomonitors for heavy metal levels in the Gulf of Suez, Red Sea

    Science.gov (United States)

    Hamed, Mohamed A.; Emara, Ahmed M.

    2006-05-01

    Levels of the heavy metals Copper (Cu), Zinc (Zn), Lead (Pb), Cadmium (Cd), Chromium (Cr), Nickel (Ni), Iron (Fe) and Manganese (Mn) were determined in coastal water, sediments and soft tissues of the gastropod limpet, Patella caerulea, and the bivalve, Barbatus barbatus, from seven different stations in the western coast of the Gulf of Suez. The concentrations of heavy metals in water ranged between 3.37-4.78, 18.83-21.46, 2.75-3.17, 0.22-0.27, 0.99-1.21, 2.69-3.65, 3.75-4.56 μg L - 1 and 23.82-32.78 mg g - 1 for Cu, Zn, Pb, Cd, Cr, Ni, Mn and Fe, respectively. The corresponding concentration values in the sediments were 8.65-12.16, 51.78-58.06, 36.52-42.15, 3.23-3.98, 9.03-12.75, 34.31-49.63, 3.28-4.56 and 64.20-70.22 μg g - 1 for Cu, Zn, Pb, Cd, Cr, Ni, Mn and Fe, respectively. The highest accumulated metals were Fe, Zn and Mn in both P. caerulea and B. barbatus, while the lowest one was Cd. The accumulation of metals was more pronounced in P. caerulea than B. barbatus. The highest concentrations of all metals in water, sediments and mollusca were recorded at Adabiya harbour north of the Gulf, while the lowest concentrations were recorded at Gabal El-Zeit and Hurghada. Land based activities and ships awaiting berth are the main source of metal pollution in the northern part of the Gulf.

  8. Minor element partitioning and mineralogy in limpets from the Ischia CO2 vent site

    Science.gov (United States)

    Langer, Gerald; Sadekov, Aleksey; Nehrke, Gernot; Baggini, Cecilia; Rodolfo-Metalpa, Riccardo; Hall-Spencer, Jason; Bijma, Jelle; Elderfield, Henry

    2015-04-01

    Specimens of the patellogastropod limpet Patella caerulea were collected within and outside a CO2 vent site at Ischia, Italy. The shells were sectioned transversally and scanned for polymorph distribution by means of confocal Raman microscopy. Minor element to calcium ratios were measured using laser-ablation-inductively-coupled-plasma-mass-spectroscopy (LA-ICPMS). Mg/Ca, Sr/Ca, and Li/Ca ratios were determined in calcitic as well as aragonitic parts of the shells. This approach allows for investigating the effects of the polymorph and the seawater carbonate chemistry on minor element partitioning separately.

  9. First report and differential colonization of Passiflora species by the B biotype of Bemisia tabaci (Gennadius) (Hemiptera: Aleyrodidae) in Brazil

    Energy Technology Data Exchange (ETDEWEB)

    Nunes, Endson S.; Vieira, Maria L.C. [Escola Superior de Agricultura Luiz de Queiroz (ESALQ-USP), Piracicaba, SP (Brazil). Dept. de Genetica]. E-mail: esnunes@carpa.ciagri.usp.br; mlcvieir@esalq.usp.br; Brown, Judith K. [University of Arizona, Tucson, AZ (United States). Dept. of Plant Sciences]. E-mail: jbrown@Ag.arizona.edu; Moreira, Adriana G.; Rezende, Jorge A.M. [Escola Superior de Agricultura Luiz de Queiroz (ESALQ-USP), Piracicaba, SP (Brazil). Dept. de Entomologia, Fitopatologia e Zoologia Agricola]. E-mails: agmoreir@esalq.usp.br; amrezen@esalq.usp.br; Watson, Gillian [California Dept. of Food and Agriculture, Sacramento, CA (United States)]. E-mail: gwatson@cdfa.ca.gov; Lourencao, Andre L. [Instituto Agronomico, Campinas, SP (Brazil). Centro de Pesquisa e Desenvolvimento de Fitossanidade]. E-mail: andre@iac.sp.gov.br; Piedade, Sonia M.S. [Escola Superior de Agricultura Luiz de Queiroz (ESALQ-USP), Piracicaba, SP (Brazil). Dept. de Ciencias Exatas]. E-mail: jsoniamsp@esalq.usp.br

    2008-11-15

    This note is the first report of Bemisia tabaci (Gennadius) biotype B colonizing passionvine in Brazil. We examined the colonization of nine Passiflora species by a wild B type population under greenhouse conditions. P. amethystina Mikan was the most preferred species for oviposition and colonization, whereas P. suberosa L., P. coriacea Juss. and two commercially cultivated species, P. alata Curtis and P. edulis Sims f. flavicarpa Degener, were mostly uncolonised. P. morifolia Mast., P. cincinnata Mast., P. foetida L. and P. caerulea L. showed intermediate levels of colonization. Such differential colonization might suggest some degree of resistance by certain Passiflora species or oviposition preference by B. tabaci. (author)

  10. Two new species of Esthemopsis C. Felder & R. Felder, 1865 (Lepidoptera: Riodinidae: Symmachiini) from southeastern and northeastern Brazil, with taxonomic comments on Esthemopsis teras (Stichel, 1910) stat. rev. and Esthemopsis pallida Lathy, 1932 stat. nov.

    Science.gov (United States)

    Silva Dias, Fernando Maia; Dolibaina, Diego Rodrigo; Mielke, Olaf Hermann Hendrik; Casagrande, Mirna Martins

    2014-03-27

    Two new species of Esthemopsis C. Felder & R. Felder, 1865 from southeastern and northeastern Brazil are described, Esthemopsis sateri sp. nov. and Esthemopsis diamantina sp. nov., and revised and new combinations are proposed for Esthemopsis teras (Stichel, 1910) stat. rev. and Esthemopsis pallida Lathy, 1932 stat. nov., respectively. Lectotypes are designated for Lepricornis teras Stichel, 1910 and Esthemopsis caerulea pallida Lathy, 1932. The habitus of male and female specimens of the species discussed are illustrated; male head and labial palpus pictures, male and female genitalia illustrations are provided.

  11. Patrones de crecimiento postnatal en ocho especies de garzas (Ciconiiformes: Ardeidae)

    OpenAIRE

    Dennis Denis Ávila

    2010-01-01

    El crecimiento en aves forma parte de las estrategias reproductivas y su implicación ecológica ha sido profundamente debatida. En este trabajo se describe el crecimiento del pico, peso y tarso de ocho garzas (Aves: Ardeidae) en la ciénaga de Birama, Cuba. Para ello, entre 1998-2006, se midieron en días alternos un total de 714 pichones de Butorides virescens, Bubulcus ibis, Egretta thula, E. tricolor, E. caerulea, E. rufescens, Ardea alba y Nycticorax nycticorax, durante sus dos primeras sema...

  12. Limpets counteract ocean acidification induced shell corrosion by thickening of aragonitic shell layers

    Directory of Open Access Journals (Sweden)

    G. Langer

    2014-08-01

    Full Text Available Specimens of the patellogastropod limpet Patella caerulea were collected within (pHlow-shells and outside (pHn-shells a CO2 vent site at Ischia, Italy. Four pHlow-shells and four pHn-shells were sectioned transversally and scanned for polymorph distribution by means of confocal Raman microscopy. The pHlow-shells displayed a twofold increase in aragonite area fraction and size normalised aragonite area. Size normalised calcite area was halved in pHlow-shells. Taken together with the increased apical and the decreased flank size normalised thickness of the pHlow-shells, these data led us to conclude that low pH exposed P. caerulea specimens counteract shell dissolution by enhanced shell production. The latter is different from normal elongation growth and proceeds through addition of aragonitic layers only, while the production of calcitic layers is confined to elongation growth. Therefore aragonite cannot be regarded as a per se disadvantageous polymorph under ocean acidification conditions.

  13. Limpets counteract ocean acidification induced shell corrosion by thickening of aragonitic shell layers

    Science.gov (United States)

    Langer, G.; Nehrke, G.; Baggini, C.; Rodolfo-Metalpa, R.; Hall-Spencer, J. M.; Bijma, J.

    2014-12-01

    Specimens of the patellogastropod limpet Patella caerulea were collected within (pHlow-shells) and outside (pHn-shells) a CO2 vent site at Ischia, Italy. Four pHlow-shells and four pHn-shells were sectioned transversally and scanned for polymorph distribution by means of confocal Raman microscopy. The pHlow-shells displayed a twofold increase in aragonite area fraction and size-normalised aragonite area. Size-normalised calcite area was halved in pHlow-shells. Taken together with the increased apical and the decreased flank size-normalised thickness of the pHlow-shells, these data led us to conclude that low-pH-exposed P. caerulea specimens counteract shell dissolution by enhanced shell production. This is different from normal elongation growth and proceeds through addition of aragonitic parts only, while the production of calcitic parts is confined to elongation growth. Therefore, aragonite cannot be regarded as a disadvantageous polymorph per se under ocean acidification conditions.

  14. Produção de mudas de maracujazeiro-amarelo por enxertia hipocotiledonar sobre sete espécies de passifloras

    Directory of Open Access Journals (Sweden)

    Geraldo Costa Nogueira Filho

    2011-03-01

    Full Text Available O maracujazeiro-amarelo (Passiflora edulis Sims. f. flavicarpa Deg. é a principal Passifloraceae cultivada no Brasil, e seu cultivo tem encontrado algumas dificuldades, principalmente no que concerne à longevidade dos pomares, a qual tem sido reduzida devido à incidência de doenças e nematoides que atacam o seu sistema radicular. Este trabalho teve por objetivo estabelecer tecnologias para a produção de mudas de maracujazeiro-amarelo, através da enxertia hipocotiledonar, sobre sete porta-enxertos. Os porta-enxertos utilizados foram: P. edulis f. flavicarpa; P. caerulea; P. alata; P. gibertii; P. coccinea; P. cincinnata e P. setacea. O delineamento experimental foi o inteiramente casualizado, com 36 repetições para cada porta-enxerto. As características avaliadas foram: percentual de sobrevivência dos enxertos, altura das plantas, número de folhas, diâmetro do porta-enxerto. A metodologia de enxertia hipocotiledonar testada foi bem-sucedida para a maioria das espécies testadas. Destacaram-se os porta-enxertos: P. caerulea; P. gibertii; P. cincinnata e P. flavicarpa, tanto pelo alto índice de pegamento como pela precocidade na obtenção da muda.

  15. Breeding waterbirds (Pelecaniformes at Maracujá island, Babitonga bay estuary, north coast of Santa Catarina, Brazil

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    Alexandre Venson Grose

    2014-06-01

    Full Text Available Waterbirds usually breed in an aggregate way, forming large breeding colonies with different species. This study describes biological aspects of waterbirds from a colony at Maracujá island, in the Babitonga bay estuary, north coast of Santa Catarina, Brazil. We collected data on species richness, abundance, breeding chronology, predation, and nest distribution in the island. Within the period from September 2010 to February 2011, 15 waterbird species were identified using the feeding and resting site, and, out of them, 5 species bred in the island (Nycticorax nycticorax, Nyctanassa violacea, Egretta caerulea, Phimosus infuscatus, and Aramides cajanea. We registered 154 active nests, 79 nests of N. Nycticorax, 14 nests of N. violacea, 6 nests of P. infuscatus, 5 nests of E. caerulea, and only 1 nest of A. cajanea. The estimated local population was 308 breeding individuals, and N. nycticorax was the most abundant species, accounting for 51% of nests. The months with higher concentration of nests were September, October, and November. In addition to waterbirds, 4 birds of prey and scavenger species were registered, which were responsible for egg and/or chick losses, along with Larus dominicanus. Maracujá island has been used for breeding by at least 5 species and its protection deserves attention, in order to ensure the maintenance and possibility to expand this breeding site.

  16. Effect of 4 Kinds of Vegetation Restoration Patterns on the Topsoil Organic Carbon and Nitrogen in Rocky Desertification Region of Guizhou Province%4种植被恢复模式对贵州石漠化地区表层土壤有机碳氮的影响研究

    Institute of Scientific and Technical Information of China (English)

    吕文强; 唐金刚; 罗时琴; 林涛; 周传艳

    2016-01-01

    The topsoil contents,densities and storage of soil organic carbon(SOC)and total nitrogen(TN) of four different vegetation restoration patterns,i.e.,Prunus salicina,Juglans cathayensis,Punica grana-tum and Passiflora caerulea were studied in rocky desertification region in Guizhou Province.The results showed that the contents of SOC under four different vegetation restoration patterns were in the order of Prunus salicina >Passiflora caerulea >Juglans cathayensis >Punica granatum,while the contents of TN did not differ much.SOC and TN contents and densities in the 0~10 cm soil layer were higer in the 10~20 cm soil layer in each of the four vegetation restoration patterns.SOC storage in the topsoil layer was the highest(54.31t/hm2 )in Prunus salicina,and TN storage in the topsoil layer was the highest (6.21t/hm2)in Passiflora caerulea.Both SOC and TN storage were the lowest in Punica granatum,with 49.77t/hm2 and 5.66t/hm2 respectively.Prunus salicina and Passiflora caerulea were both comparative better vegetation restoration patterns in the process of vegetation restoration and reconstruction in the rocky desertification region of Guizhou Province.%对酥李(Prunus salicina)、核桃(Juglans cathayensis)、石榴(Punica granatum)以及西番莲(Passiflora caerulea)等4种植被治理石漠化模式下土壤有机碳氮含量、密度以及储量进行了研究,结果表明,4种植被恢复模式下:土壤有机碳含量大小顺序为酥李模式>西番莲模式>核桃模式>石榴模式,土壤全氮含量差异较小;0~10cm层土壤有机碳氮含量和密度均大于10~20 cm 层;土壤有机碳和全氮储量最高的分别为酥李模式(54.31t/hm2)和西番莲模式(6.21t/hm2);土壤有机碳和全氮储量最低的均为石榴模式,分别为49.77t/hm2和5.66t/hm2。相对而言,酥李模式和西番莲模式是土壤有机碳氮储存能力较高的两种植被恢复模式。

  17. Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.

    Science.gov (United States)

    Breider, Sven; Scheuner, Carmen; Schumann, Peter; Fiebig, Anne; Petersen, Jörn; Pradella, Silke; Klenk, Hans-Peter; Brinkhoff, Thorsten; Göker, Markus

    2014-01-01

    Earlier phylogenetic analyses of the marine Rhodobacteraceae (class Alphaproteobacteria) genera Leisingera and Phaeobacter indicated that neither genus might be monophyletic. We here used phylogenetic reconstruction from genome-scale data, MALDI-TOF mass-spectrometry analysis and a re-assessment of the phenotypic data from the literature to settle this matter, aiming at a reclassification of the two genera. Neither Phaeobacter nor Leisingera formed a clade in any of the phylogenetic analyses conducted. Rather, smaller monophyletic assemblages emerged, which were phenotypically more homogeneous, too. We thus propose the reclassification of Leisingera nanhaiensis as the type species of a new genus as Sedimentitalea nanhaiensis gen. nov., comb. nov., the reclassification of Phaeobacter arcticus and Phaeobacter leonis as Pseudophaeobacter arcticus gen. nov., comb. nov. and Pseudophaeobacter leonis comb. nov., and the reclassification of Phaeobacter aquaemixtae, Phaeobacter caeruleus, and Phaeobacter daeponensis as Leisingera aquaemixtae comb. nov., Leisingera caerulea comb. nov., and Leisingera daeponensis comb. nov. The genera Phaeobacter and Leisingera are accordingly emended.

  18. A phylogenetic revision of the Glaucopsyche section (Lepidoptera: Lycaenidae), with special focus on the Phengaris-Maculinea clade

    DEFF Research Database (Denmark)

    Ugelvig, L. V.; Vila, R.; Pierce, N. E.

    2011-01-01

    . The evolutionary history of this butterfly section is particularly important to understand the evolution of life history diversity connected to food-plant and host-ant associations in the larval stage. In the present study, we use a combination of four nuclear and two mitochondrial genes to reconstruct...... the phylogeny of the Glaucopsyche section, and in particular, to study the relationships among and within the Phengaris-Maculinea species. We find a clear pattern between the clades recovered in the Glaucopsyche section phylogeny and their food-plant associations, with only the Phengaris-Maculinea clade...... utilising more than one plant family. Maculinea is, for the first time, recovered with strong support as a monophyletic group nested within Phengaris, with the closest relative being the rare genus Caerulea. The genus Glaucopsyche is polyphyletic, including the genera Sinia and Iolana. Interestingly, we...

  19. Steroidal and triterpenoidal glucosides from Passiflora alata

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    Reginatto Flávio H.

    2001-01-01

    Full Text Available Five glycosides were isolated from leaves of P. alata. The structures 1-5 were obtained through extensive spectral analyses as 3-O-beta-D-glucopyranosyl-stigmasterol (1, 3-O-beta-D-glucopyranosyl-oleanolic acid (2, 3-O-beta-D-glucopyranosyl-(1->3-beta-D-glucopyranosyl-oleanolic acid (3, 3-O-beta-D-glucopyranosyl-(1->2-beta-D-glucopyranosyl-oleanolic acid (4 and 9,19-cyclolanost-24Z-en-3beta,21,26-trihydroxy-3,26-di-O-gentiobiose (5. Comparison of the TLC profiles of the hydroethanolic extracts from leaves of other Passiflora species found in the south of Brazil (P. actinia, P. caerulea, P. edulis var. flavicarpa, P. elegans, P. foetida, P. misera and P. tenuifila showed that only P. alata presented saponin accumulation.

  20. Venturia chinensis sp. nov., a new venturialean ascomycete from Khingan Mountains

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    Jiaqi Zhang

    2016-09-01

    Full Text Available A new species of Venturia (V. chinensis is described and illustrated from the leaves of Lonicera praeflorens collected from Lesser Khingan Mountains, the northeast China. It is characterized by habitat saprobic; ascomata small-sized, solitary or scattered, superficial, subglobose to citriform, wall black, papillate, ostiolate, covered with setae; peridium thin; hamathecium evanescent in mature ascomata; asci 8-spored, bitunicate, fissitunicate, oblong to obclavate, with or without a short, knob-like pedicel; ascospores ellipsoidal, olivaceous pale brown, 1-septate, ascospore wall thin, smooth. Comparisons of V. chinensis with V. lonicerae (another species on Lonicera caerulea and other species of Venturia lead to the conclusion that collected taxon is new. Its relationships with other species of Venturia are discussed based on morphology and 28S nrDNA and ITS nrDNA sequence comparisons.

  1. Preferência alimentar, efeito da planta hospedeira e da densidade larval na sobrevivência e desenvolvimento de Dione juno juno (Cramer (Lepidoptera, Nymphalidae Feeding preference, host-plant and larval density effects on survivorship and growth rates of Dione juno juno (Cramer (Lepidoptera, Nymphalidae

    Directory of Open Access Journals (Sweden)

    Vidica Bianchi

    2005-03-01

    Full Text Available Dez espécies de passifloraceas ocorrentes no Rio Grande do Sul foram avaliadas em relação à preferência alimentar e performance larval de Dione juno juno (Cramer, 1779 (Lepidoptera, Nymphalidae: Passifora alata Dryander, 1781; P. amethystina Mikan, 1820; P. caerulea Linnaeus, 1753; P. capsularis Linnaeus, 1753; P. edulis Sims, 1818; P. elegans Masters, 1872; P. misera Humbold, Bonpland et Kunth, 1817; P. suberosa Linnaeus, 1753; P. tenuifila Killip, 1927 e P. warmingii Masters, 1872. O efeito da densidade larval na performance foi também testado em P. edulis: grupos de uma, duas, quatro, oito, dezesseis, trinta e duas, e sessenta e quatro larvas. A preferência das larvas foi avaliada com base em teste utilizando-se discos foliares, com e sem chance de escolha. As larvas obtiveram maior sobrevivência em P. misera, P. tenuifila e P. edulis. Nenhuma sobreviveu em P. alata, P. capsularis, P. amesthystina, P. suberosa e P. warmingii. As larvas escolheram P. edulis nos testes com chance de escolha. Ingeriram quantidades semelhantes de P. tenuifila, P. misera e P. caerulea nos testes sem chance de escolha. A taxa de crescimento larval e o tamanho dos adultos foi maior quando criadas em P. misera, quando comparado com P. edulis. A sobrevivência foi significativamente reduzida nos grupos com uma, duas e quatro larvas, o que pode explicar em parte o comportamento gregário desta espécie. Concluiu-se que poucas espécies de passifloráceas além de P. edulis podem constituir-se em hospedeiras potenciais de D. juno juno no Estado do Rio Grande do Sul. Numa perspectiva ecológica, no entanto, muitas destas hospedeiras alternativas apresentam limitações a respeito de sua adequabilidade, tamanho ou abundância da planta.Ten passion vine species from Rio Grande do Sul were evaluated regarding larval feeding preference and performance of Dione juno juno (Cramer, 1779: Passifora alata Dryander, 1781; P. amethystina Mikan, 1820; P. caerulea Linnaeus

  2. Distinction of the C-glycosylflavone isomer pairs orientin/isoorientin and vitexin/isovitexin using HPLC-MS exact mass measurement and in-source CID.

    Science.gov (United States)

    Pereira, Cíntia A M; Yariwake, Janete H; McCullagh, Michael

    2005-01-01

    HPLC-MS using collision induced dissociation (CID) has been utilised for the identification of the C-glycosylflavone isomer pairs orientin/isoorientin and vitexin/isovitexin. HPLC-CID/MS analyses produced pseudo-MS/MS spectra that allowed the identification of the flavone C-glycosides. The efficient differentiation of isomers was performed by comparing the CID-MS/MS spectra (including exact mass measurements) of particular fragments from the C-glycoside unit. In order to illustrate some possibilities of these MS techniques, they were applied to the comparative analyses of extracts of Passiflora alata, P. edulis, P. incarnata and P. caerulea (Passifloraceae) that are employed as phytomedicines in Brazil and South America.

  3. Biodiversidade de Ichneumonidae (Hymenoptera e monitoramento das espécies de Pimplinae e Poemeniinae do Capão da Imbuia, Curitiba, Paraná Biodiversity of Ichneumonidae (Hymenoptera and monitoring of the species of Pimplinae and Poemeniinae from Capão da Imbuia, Curitiba, Paraná

    Directory of Open Access Journals (Sweden)

    Alice Fumi Kumagai

    2002-06-01

    Full Text Available The ichneumofauna of Capão da Imbuia was studied during three years of capture, using Malaise traps. 114,469 specimens were captured, of which 3,603 belong to 20 subfamilies of ichneumonids. Pimplinae and Poemeniinae in the wood contains 14 genera and 48 species. In the first sample (1978-1979, 23 species were captured; in the second (1985-1986, 21 species were obtained, 13 of which had been previously captured, with an addition of eight species. And in the last sample (1995-1996, 39 species were obtained, of which 17 had not previously been captured. The dominant species, considering the number of individuals, were: Pimpla semirufa Brullé, 1846, Pimpla caerulea Brullé, 1846, Neotheronia aff. hespenheidei, Pimpla golbachi (Porter, 1970, Pimpla sumichrasti Cresson, 1874, Flacopimpla sulina Graf & Kumagai, 1997 and Pimpla tomyris Schrottky, 1902.

  4. Chromosome characterization and variability in some Iridaceae from Northeastern Brazil

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    Lânia Isis F. Alves

    2011-01-01

    Full Text Available The chromosomes of 15 species of Iridaceae of the genera Alophia, Cipura, Eleutherine, Neomarica and Trimezia (subfamily Iridoideae were examined after conventional Giemsa staining. The karyotypes of Alophia drummondii (2n = 14+1B, 28, 42 and 56, Cipura paludosa (2n = 14, C. xanthomelas (2n = 28 and Eleutherine bulbosa (2n = 12 were asymmetric; Neomarica candida, N. caerulea, N. humilis, N. glauca, N. gracilis, N. northiana and Neomarica sp. (2n = 18; N. cf. paradoxa (2n = 28, Trimezia fosteriana (2n = 52, T. martinicensis (2n = 54 and T. connata (2n = 82 were all generally symmetric. New diploid numbers of 2n = 56 for Alophia drummondii, 2n = 18 for N. candida, N. humilis, N. glauca, and N. gracilis, 2n = 28 for N. cf. paradoxa, and 2n = 82 for T. connata are reported. The karyotypic evolution of the studied species is discussed.

  5. Permanent genetic resources added to Molecular Ecology Resources Database 1 February 2012 - 31 March 2012.

    Science.gov (United States)

    Andris, Malvina; Arias, M C; Barthel, Brandon L; Bluhm, Burton H; Bried, Joël; Canal, D; Chen, X M; Cheng, P; Chiappero, Marina B; Coelho, Manuela M; Collins, Angela B; Dash, M; Davis, Michelle C; Duarte, Margarida; Dubois, Marie-Pierre; Françoso, E; Galmes, M A; Gopal, Keshni; Jarne, Philippe; Kalbe, Martin; Karczmarski, Leszek; Kim, Hun; Martella, Mónica B; McBride, Richard S; Negri, Valeria; Negro, J J; Newell, Annakay D; Piedade, Ana F; Puchulutegui, Cecilia; Raggi, Lorenzo; Samonte, Irene E; Sarasola, J H; See, D R; Seyoum, Seifu; Silva, Mónica C; Solaro, C; Tolley, Krystal A; Tringali, Michael D; Vasemägi, A; Xu, L S; Zanón-Martínez, J I

    2012-07-01

    This article documents the addition of 171 microsatellite marker loci and 27 pairs of single nucleotide polymorphism (SNP) sequencing primers to the Molecular Ecology Resources Database. Loci were developed for the following species: Bombus pauloensis, Cephalorhynchus heavisidii, Cercospora sojina, Harpyhaliaetus coronatus, Hordeum vulgare, Lachnolaimus maximus, Oceanodroma monteiroi, Puccinia striiformis f. sp. tritici, Rhea americana, Salmo salar, Salmo trutta, Schistocephalus solidus, Sousa plumbea and Tursiops aduncus. These loci were cross-tested on the following species: Aquila heliaca, Bulweria bulwerii, Buteo buteo, Buteo swainsoni, Falco rusticolus, Haliaeetus albicilla, Halobaena caerulea, Hieraaetus fasciatus, Oceanodroma castro, Puccinia graminis f. sp. Tritici, Puccinia triticina, Rhea pennata and Schistocephalus pungitii. This article also documents the addition of 27 sequencing primer pairs for Puffinus baroli and Bulweria bulwerii and cross-testing of these loci in Oceanodroma castro, Pelagodroma marina, Pelecanoides georgicus, Pelecanoides urinatrix, Thalassarche chrysostoma and Thalassarche melanophrys.

  6. A Theoretical Characterization of Curvature Controlled Adhesive Properties of Bio-Inspired Membranes

    DEFF Research Database (Denmark)

    Afferante, Luciano; Heepe, Lars; Casdorff, Kirstin

    2016-01-01

    Some biological systems, such as the tree frog, Litoria caerulea, and the bush-cricket, Tettigonia viridissima, have developed the ability to control adhesion by changing the curvature of their pads. Active control systems of adhesion inspired by these biological models can be very attractive...... for the development of devices with controllable adhesive properties. In this paper, we present a theory describing the adhesive behavior of an artificial system consisting of an inflatable membrane clamped to a metallic cylinder and filled with air. In such a system, by controlling the internal pressure acting...... the experiments. The present model might help to achieve a better understanding of the adhesion behavior of biological systems and of the fingertips that, in a broad sense, may be regarded as shell-like structures....

  7. The effect of dominant species on numbers and agę structure of Iris sibirica L. population on blue moor-grass meadow in southern Poland

    Directory of Open Access Journals (Sweden)

    Kinga Kostrakiewicz

    2011-01-01

    Full Text Available Two populations of Iris sibirica, a clonal species protected by law in Poland, occurring in patches of Molinietum caeruleae, of similar floristic composition although with different dominant species, were studied. In the Stanisławice locality, species with a high competitive potential prevailed, contrary to the Opatkowice locality, where the species of low competitive potential dominated. It was established that vegetative propagation ensures the continued presence of populations in both localities, although the proximity of plants with high competitive potential limits the vegetative propagation of ramet clusters of Iris sibirica. Despite the high level of seed production, the recruitment of seedlings in both patches is possible only in artificially created gaps. The field observations support the conclusion that creating gaps allowing for germination of seeds and development of seedlings, as well as eliminating expansive neighbours allowing proliferation of ramet clusters of Iris sibirica, is an affective way of protecting populations of this species.

  8. A Theoretical Characterization of Curvature Controlled Adhesive Properties of Bio-Inspired Membranes

    DEFF Research Database (Denmark)

    Afferante, Luciano; Heepe, Lars; Casdorff, Kirstin;

    2016-01-01

    Some biological systems, such as the tree frog, Litoria caerulea, and the bush-cricket, Tettigonia viridissima, have developed the ability to control adhesion by changing the curvature of their pads. Active control systems of adhesion inspired by these biological models can be very attractive...... for the development of devices with controllable adhesive properties. In this paper, we present a theory describing the adhesive behavior of an artificial system consisting of an inflatable membrane clamped to a metallic cylinder and filled with air. In such a system, by controlling the internal pressure acting...... on the membrane, it is possible to modulate the adhesive strength. In particular, an increase of the internal pressure and, hence, the curvature of the membrane, results in a decrease of the pull-off force. Results predicted by the theoretical model are in good agreement with experimental data. The model explains...

  9. Caracterização agromorfológica do maracujazeiro (Passiflora spp.

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    Crochemore Maria Lúcia

    2003-01-01

    Full Text Available Esse estudo descreve a variação genética de 55 acessos de Passiflora spp., constituídos de P. edulis, P. alata, P. coccinea, P. caerulea, P. foetida, P. giberti, P. macrocarpa, P. macrocarpa x alata, P. serrato digitata, P. suberosa e um acesso Passiflora sp. Vinte e dois descritores morfológicos foram avaliados sobre plantas isoladas em sistema de espaldeira e permitiram estruturar a diversidade encontrada. As relações filogenéticas entre os acessos, avaliadas pela análise de componentes principais e de distâncias genéticas, mostraram existir ampla diversidade entre as espécies estudadas. Algumas espécies mostraram caracteres monomórficos. Importante variabilidade foi observada dentro de P. alata e de P. edulis, e pequenas divergências foram encontradas entre os acessos da forma flavicarpa.

  10. Florescimento e produção de maracujazeiro-amarelo obtido por enxertia hipocotiledonar em Jaboticabal-SP e Araguari-MG

    Directory of Open Access Journals (Sweden)

    Geraldo Costa Nogueira Filho

    2011-03-01

    Full Text Available O trabalho foi realizado no ripado e na área de Fruticultura do Departamento de Produção Vegetal da Faculdade de Ciências Agrárias e Veterinárias, Universidade Estadual Paulista (FCAV/UNESP, em Jaboticabal-SP, e em área de pequeno produtor fornecedor da Maguari (Kraft Foods do Brasil em Araguari-MG, tendo por objetivo avaliar o desenvolvimento de maracujazeiro-amarelo enxertado por enxertia hipocotiledonar, sobre seis espécies de Passifloraceas. Foram utilizados sete tratamentos, sendo seis tratamentos com as espécies: P. edulis f. flavicarpa, P. caerulea, P. alata, P. gibertii, P. coccinea, P. cincinnata e um tratamento com pé-franco de P. edulis f. flavicarpa. Para todos os tratamentos, a variedade-copa utilizada foi o maracujazeiro-amarelo 'FB 200'. O delineamento experimental utilizado foi o de blocos ao acaso, com três repetições. A parcela foi constituída de uma linha de quatro plantas (20m lineares. A condução foi realizada conforme os tratos culturais recomendados para a cultura. As características avaliadas foram florescimento, produção, número e peso médio de frutos. Em Jaboticabal-SP, o pé-franco apresentou melhor desenvolvimento e maior produção que as plantas enxertadas. Em Araguari-MG, P. edulis f. flavicarpa, P. caerulea e pé-franco apresentaram melhor produção. Não houve diferença significativa no número de frutos, e o P. alata diminuiu, em relação aos outros porta-enxertos, o peso dos frutos.

  11. Trace elements in shells of common gastropods in the near vicinity of a natural CO2 vent: no evidence of pH-dependent contamination

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    J. B. McClintock

    2014-04-01

    Full Text Available There is concern that the use of natural volcanic CO2 vents as analogs for studies of the impacts of ocean acidification on marine organisms are biased due to physiochemical influences other than seawater pH alone. One issue that has been raised is whether potentially harmful trace elements in sediments that are rendered more soluble and labile in low pH environments are made more bioavailable, and sequestered in the local flora and fauna at harmful levels. In order to evaluate this hypothesis, we analyzed the concentrations of trace elements in shells (an established proxy for tissues of four species of gastropods (two limpets, a topshell and a whelk collected from three sites in Levante Bay, Vulcano Island. Each sampling site increased in distance from the primary CO2 vent and thus represented low, moderate, and ambient seawater pH conditions. Concentrations of As, Cd, Co, Cr, Hg, Mo, Ni, Pb, and V measured in shells using ICP-OES were below detection thresholds for all four gastropod species at all three sites. However, there were measurable concentrations of Sr, Mn, and U in the shells of the limpets Patella caerulea, P. rustica, and the snail Osilinus turbinatus, and similarly, Sr, Mn, U, and also Zn in the shells of the whelk Hexaplex trunculus. Levels of these elements were within the ranges measured in gastropod shells in non-polluted environments, and with the exception of U in the shells of P. caerulea, where the concentration was significantly lower at the collecting site closest to the vent (low pH site, there were no site-specific spatial differences in concentrations for any of the trace elements in shells. Thus trace element enhancement in sediments in low-pH environments was not reflected in greater bioaccumulations of potentially harmful elements in the shells of common gastropods.

  12. Defects in host immune function in tree frogs with chronic chytridiomycosis.

    Directory of Open Access Journals (Sweden)

    Sam Young

    Full Text Available The amphibian chytrid fungus Batrachochytrium dendrobatidis (Bd has caused mass mortality leading to population declines and extinctions in many frog species worldwide. The lack of host resistance may be due to fungal immunosuppressive effects that have been observed when Bd is incubated with cultured lymphocytes, but whether in vivo host immunosuppression occurs is unknown. We used a broad range of hematologic and protein electrophoresis biomarkers, along with various functional tests, to assess immune competence in common green (Litoria caerulea and white-lipped (L. infrafrenata tree frogs experimentally infected with Bd. Compared with uninfected frogs, Bd infection in L. caerulea caused a reduction in immunoglobulin and splenic lymphocyte responses to antigenic stimulation with sheep red blood cells, along with decreased white blood cell and serum protein concentrations, indicating possible impaired immune response capability of Bd-infected frogs. This is the first in vivo study suggesting that infection with Bd causes multiple defects in systemic host immune function, and this may contribute to disease development in susceptible host species. Although L. infrafrenata failed to maintain Bd infection after exposure, white blood cell and serum globulin concentrations were lower in recovered frogs compared with unexposed frogs, but antigen-specific serum and splenic antibody, and splenic cellular, responses were similar in both recovered and unexposed frogs. This may indicate potential systemic costs associated with infection clearance and/or redirection of host resources towards more effective mechanisms to overcome infection. No clear mechanism for resistance was identified in L. infrafrenata, suggesting that localized and/or innate immune defense mechanisms may be important factors involved in disease resistance in this species.

  13. A review of Kudoa-induced myoliquefaction of marine fish species in South Africa and other countries

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    Sun S. Henning

    2013-11-01

    Full Text Available Myoliquefaction of fish musculature results in customer quality complaints and in huge economic losses, especially with regard to Pacific hake (Merluccius productus, farm-reared Atlantic salmon (Salmo salar, South African pilchards (Sardinops ocellatus and Cape snoek (Thyrsites atun. Myoliquefaction, or jelly flesh, is caused by proteolytic enzymes released by the marine myxosporean parasite,Kudoa thyrsites, after the death of the fish. Currently there are no fast methods of detection for this microscopic parasite, and because myoliquefaction is evident only after 38-56 h post-mortem, infected fish inevitably reach the processor and/or consumer. Several methods of detection have been investigated, but most of these methods are time-consuming and/or result in destruction of the fish, and are thus impractical for fishing vessels and fish processors. Limited research is available on possible means of destroying or inhibiting the post-mortem activity of the parasitic proteolytic enzyme. Means such as manipulating post-mortem pH and temperature control have been suggested; leaving opportunities for research into food technology applications such as cold-chain management and ionising radiation.

  14. Satellite remote sensing prediction of Japanese pilchard fishing ground in the Huanghai Sea and the East China Sea

    Institute of Scientific and Technical Information of China (English)

    杨纪明; 顾传宬; 李丽云; 李军; 高崇义; 李文泽

    1995-01-01

    The thermophily, fishing season and central fishing ground of Japanese pilchard (Sardinops melanosticta) were studied by using satellite remote sensing (SRS) and other methods in Haizhou Bay and Tsushima waters during 1986 -1990. A rapid prediction method of fishing ground is presented. Moreover. the results indicated that the thermophilic values of the fish stock are 11 - 20℃ and both fishing grounds are in increasing temperature process from the beginning to the end of the fishing period. The Japanese pilchards gather vigorously at the sea surface temperature of 15-17℃. The water temperature is a key factor affecting the fishing season and the catch of the fishing ground. The increasing temperature process restricts the fishing season development and central fishing ground formation. The accuracy of 15 predictions made in the Haizhou Bay fishing ground is up to 91.3%, and 37 predictions made in the Tsushima fishing ground shorten the fish detection time by 13.4% - 22% on the average.

  15. Mixed layer depth variations in the Kuroshio Extension in relation to Japanese sardine

    Science.gov (United States)

    Yasuda, I.; Nishikawa, H.; Itoh, S.

    2008-12-01

    Mixed layer depths in and south of the Kuroshio Extension changed from deep to shallow states in the late- 1980s and early-1990s. This change corresponded to the collapse of Japanese sardine (Sardinops melanostictus). This mixed layer shoaling was accompanied by lower temperature in 200-400m depths and higher temperature near the surface. Wintertime field survey in 2006 (Hakuho-maru KH06-1 cruise) demonstrated that late winter maximum mixed layer depth reach deeper with the greater isothermal depth of 14-15degC and higher temperature in 300-400m depth. High-resolution ocean model hindcast data suggests that the accelerated near-surface Kuroshio/Kuroshio Extension associated with the elevated sea-surface height anomaly enhanced the heat transport near the surface. This greater heat advection near the surface overrides the cooler subtropical mode water that was created in the previous years possibly causes the shallower winter mixed layer and collapse of the Japanese sardine.

  16. Fish larvae from the Gulf of California

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    Gerardo Aceves-Medina

    2003-03-01

    Full Text Available Taxonomic composition of fish larvae was analysed from 464 plankton samples obtained during 10 oceanographic surveys in the Gulf of California between 1984 and 1988. We identified 283 taxa: 173 species, 57 genera, and 53 families. Tropical and subtropical species predominated except during the winter, when temperate-subarctic species were dominant. The most abundant species were the mesopelagic Benthosema panamense, Triphoturus mexicanus and Vinciguerria lucetia, but the coastal pelagic species Engraulis mordax, Opisthonema spp., Sardinops caeruleus and Scomber japonicus were also prominent. The taxonomic composition of the ichthyoplankton shows the seasonality of the Gulf as well as environmental changes that occurred between the 1984-1987 warm period and the 1956-1957 cool period previously reported. The presence of E. mordax larvae as one of the most abundant species in the Gulf provides evidence of the reproduction of this species two years before the development of the northern anchovy fishery and the decline of the sardine fishery in the Gulf of California.

  17. The sensitivity of peat soil and peatland vegetation to drought: release of dissolved organic carbon (DOC) on rewetting

    Science.gov (United States)

    Ritson, Jonathan; Graham, Nigel; Templeton, Michael; Freeman, Christopher; Clark, Joanna

    2015-04-01

    Organic rich peat soils are a major store of carbon worldwide. Their existence is predicated on high year-round water tables which create an anoxic environment, thus limiting decay, and also to the recalcitrance of plant litter (dead plant material) commonly found in peatland areas. Climate change threatens the stability of peat soils by altering the biogeochemical cycles which control plant decay, lowering water tables so that oxic degradation can occur and by changing habitat niches such that less recalcitrant species can thrive in peatlands. One of the major fluxes of carbon from peatlands is through dissolved organic carbon (DOC) in surface waters. As peatland areas in the UK are often used as source waters for drinking water supply this presents a problem to water utilities as DOC must be effectively removed to limit colour, odour and the formation of potentially carcinogenic by-products on disinfection. Changes in catchment vegetation may occur due to climate change, nutrient deposition and changing bioclimatic envelopes. How different peatland vegetation contribute to DOC flux and how this may change in the future is therefore of interest. A six week laboratory simulation was performed on typical peatland litter (Sphagnum spp., Calluna vulgaris, Molinea caerulea, Juncus effusus) and a peat soil collected from Exmoor National Park, UK. The simulation monitored DOC flux from the decaying litter/soil and considered the impact of different drought severities using the 50th, 25th, 10th and 5th percentiles of the mean July/August monthly rainfall for Exmoor. On rewetting following the drought, all sources produced significantly different amounts of DOC (Tukey HSD pJuncus>Calluna>Sphagnum>peat. The source also had a significant (ANOVA pdrinking water treatment, with Juncus DOC proving the easiest to remove whilst Sphagnum DOC was the most difficult. Sphagnum DOC had the lowest ratio of humic-like to protein-like fluorescence, which is indicative of DOC which is

  18. Daily food intake of Kajikia audax (Philippi, 1887 off Cabo San Lucas, Gulf of California, Mexico Tasa de consumo diario de alimento de Kajikia audax (Philippi, 1887 frente a Cabo San Lucas, golfo de California, México

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    Leonardo A Abitia-Cárdenas

    2011-11-01

    Full Text Available The daily food intake rates of the striped marlin, Kajikia audax (Perciformes: Istiophoridae, were estimated using qualitative and quantitative analyses of their trophic spectrum. We analyzed the stomach contents of 505 striped marlin caught by the sport fishing fleet off Cabo San Lucas, Baja California Sur, Mexico, sampled from October 1987 through December 1989. The most important preys were chub mackerel (Scomber japonicus, California pilchard (Sardinops caeruleus, and jumbo squid (Dosidicus gigas; together these represented ~55% of the striped marlin diet. The daily food consumption was estimated to be 2 kg per day, or ~3.6% of the mean body weight of K. audax. The total biomass of the prey consumed by the striped marlin during the 27 months of sampling around Los Cabos was estimated at 24.8 ton, of which the chub mackerel represented ~29% (7.2 ton, California pilchard just under 16% (3.9 ton, and jumbo squid ~10% (2.5 ton. The feeding habits of K. audax are discussed in terms of the distribution of the epipelagic (neritic and oceanic zones, demersal, and benthic prey, confirming that striped marlin migrate vertically and horizontally in search of their food.Se estimó la tasa de consumo diario de alimento del marlín rayado Kajikia audax (Perciformes: Istiophoridae, sobre la base de análisis cualitativos y cuantitativos de su espectro trófico. Se analizó el contenido estomacal de 505 ejemplares capturados por la flota deportiva frente a Cabo San Lucas, Baja California Sur, México muestreados de octubre 1987 a diciembre 1989. Las presas más importantes fueron la macarela del Pacífico (Scomber japonicus, sardina monterrey (Sardinops caeruleus y calamar gigante (Dosidicus gigas, que en conjunto representaron aproximadamente el 55% de la dieta. La tasa de consumo de alimento fue estimado en 2 kg diarios, lo cual representó aproximadamente el 3,6% del peso corporal de K. audax. La biomasa total de presas consumidas por el marlín rayado

  19. Fish community structure in San Agustín Bay, Huatulco, Mexico Estructura comunitaria de peces en bahía San Agustín, Huatulco, México

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    MARTÍN RAMÍREZ-GUTIÉRREZ

    2007-12-01

    Full Text Available San Agustín bay is one of the most important bays in the Huatulco National Park because it includes the broadest coral reef surface of this park, which supports a great diversity of fish species. The importance of the present work is that describes quantitatively, for first time, the fish assemblage of this reef area. Visual censuses were realized on transects, according to the coral reef size, on coral and rocky reefs, and coral rubble environments. 64 species, 46 genus and 29 families were registered. Seasonal variation in fish assemblage was observed; reflecting the influence of pelagic shoaling species associated with the Gulf of Tehuantepec upwelling, during the dry season. Thus species were Selar crumenophthalmus, Caranx caninus, and Sardinops caeruleus. For species more closely associated to the reef habitat little seasonal variation was observed for each species, except Chromis atrilobata, which exhibited high density during the dry season. Pomacentrids exhibited more affinity for coral reef, labrids and haemulids for coral rubble environments. The highest diversity values were on coral rubble and the highest density was on the coral reef. Our study suggests that in this region, the Gulf of Tehuantepec upwelling is an important factor as well as the heterogeneity of habitats in shaping the fish assemblages, which must be protected to maintain the biodiversity of this important ecosystemLa bahía de San Agustín es una de las más importantes del Parque Nacional Huatulco debido a que incluye al arrecife coralino más grande de este parque, el cual alberga una gran diversidad de especies de peces. La importancia del presente trabajo es describir cuantitativamente, por primera vez, la comunidad de peces de este habitat de arrecifes. Para ello se realizaron censos visuales en transectos de acuerdo al tamaño de los ambientes coralino, rocoso y de escombros. 64 especies, 46 géneros y 29 familias fueron registrados. Se observaron cambios

  20. Cestodes of the blue shark, Prionace glauca (Linnaeus 1758), (Carcharhiniformes: Carcharhinidae), off the west coast of Baja California Sur, Mexico.

    Science.gov (United States)

    Méndez, Oscar; Galván-Magaña, Felipe

    2016-03-03

    The cestode species recovered from the spiral intestines of 27 blue sharks (Prionace glauca) (Linnaeus, 1758) are reported from the western coast of Baja California Sur (BCS). The sampling was undertaken on a monthly basis from January 2003 to January 2004. The helminthological examination indicated the presence of four species of cestodes: Platybothrium auriculatum Yamaguti, 1952; Prosobothrium japonicum Yamaguti, 1934; Anthobothrium caseyi (Yamaguti, 1934) Ruhnke & Caira, 2009; and Paraorygmatobothrium prionacis (Yamaguti, 1934) Ruhnke, 1994. Of all the 27 sharks examined, 88.8% were infected with at least one cestode species. The most frequent species was P. auriculatum infecting 85% of the spiral intestines examined. In contrast the species with the highest mean intensity was P. prionacis (80.4 200). The species richness of cestodes in P. glauca is very similar in other regions of the world despite its wide distribution; however, this richness is low compared with other species of sharks within the same family. The feeding and host-specific are important factors that influence the parameters of infection of cestodes in this shark. On the west coast of BCS, Prionace glauca feeds mainly on red crab Pleuroncodes planipes Stimpson, 1860; squids Gonatus californiensis Young, 1972, Ancistrocheirus lesueurii (D'Orbigny, 1842), Haliphron atlanticus Steenstrup, 1861, and low proportion of fish teleosts as Merluccius productus (Ayres, 1855), Sardinops sp. Hubbs, 1929 and Scomber japonicus Houttuyn, 1872. We speculate that these prey could be involved as the second intermediate hosts of these cestodes, as in other members of these genera, although the life cycles of none are known.

  1. Diversidade e abundância sazonal da avifauna em duas planícies de maré no estuário da baía da Babitonga, norte de Santa Catarina Diversity and abundance of birds in two tidal flat in Babitonga Bay estuary, north of Santa Catarina state, Brazil

    Directory of Open Access Journals (Sweden)

    Alexandre V. Grose

    2013-03-01

    Full Text Available Informações sobre a ocorrência de aves nos ambientes estuarinos de Santa Catarina ainda são escassas. O objetivo deste trabalho foi registrar a diversidade, abundância e variação sazonal das aves em duas planícies de maré na baía da Babitonga. As amostragens foram realizadas durante um ano (maio de 2006 a abril 2007. No total foram identificadas 25 espécies, sendo 15 no Linguado (LG e 24 na desembocadura do Monte de Trigo (MT. Apenas uma espécie foi exclusiva no LG Himantopus melanurus (Vieillot, 1817, enquanto dez espécies ocorreram apenas no MT. O número de espécies em MT foi superior ao encontrado em LG. A espécie mais abundante em MT foi Rynchops niger (Linnaeus, 1758 e em LG foi Egretta caerulea (Linnaeus, 1758. Durante alguns meses foram registradas espécies migratórias neárticas em ambas as áreas, o que representou um acréscimo na diversidade. A extensa planície de maré formada pelo fechamento do canal do Linguado tem sido muito ocupada por aves, possivelmente pela maior disponibilidade de alimento.Information of birds in estuaries of Santa Catarina is scarce. This work aimed to collect data on diversity, abundance and seasonal variation on this community. Sampling of birds in two tidal flats in Babitonga Bay estuary was carried out during one year (May 2006 to April 2007. A total of 25 species were identified, being 15 in Linguado (LG and 24 in Monte de Trigo (MT. Only one species was unique in LG (Himantopus melanurus Vieillot, 1817 and 10 in MT. The number of species in MT was higher than in LG due to the conservation condition. The most abundant species on MT was the Black Skimmer [Rynchops niger (Linnaeus, 1758] and in the LG was the Little Blue Heron [Egretta caerulea (Linnaeus, 1758]. During some months Nearctic migratory species were recorded in both areas, representing an increase in diversity. The extensive tidal flat formed by the closure of the channel in LG is widely used by birds, possibly because of

  2. Plant diversity affects GHG fluxes in an ecological engineering experiment in a disturbed Sphagnum peatland (La Guette, France)

    Science.gov (United States)

    Gogo, Sébastien; Laggoun-Défarge, Fatima; Leroy, Fabien; Guimbaud, Christophe; Bernard-Jannin, Léonard

    2017-04-01

    Many Sphagnum peatlands are experiencing vegetation change caused mainly by hydrological disturbances. In the context of these direct and indirect modifications, greenhouse gases (GHG) fluxes are affected by peat oxygenation, changes in litter composition (and thus decomposition) and rhizospheric processes (such as root exudates). This could lead a C sink system to switch to a source. To restore peatland functioning, ecological engineering works can be undertaken. Our study site, La Guette peatland (central France) is invaded by Molinia caerulea because a drain at the output decreased the water table depth. It was shown that it functioned as a source of C. In 2014, hydrological works were undertaken: 8 dams were installed, ditches were dug perpendicular to the water flow and back-filled with a mixture of shales and bentonite. In addition, a biodiversity experiment with 2 identical experimental stations was implemented: "downstream", close to the hydraulic works (relatively wet), "upstream", (relatively dry), with types of 3 vegetation plot (2m x 2m, n=4): 1) "control": intact vegetation (Molinia caerulea, Erica tetralix), 2) "bare" peat: vegetation and 5cm of peat were removed, 3) "Sphagnum": bare peat+Sphagnum. Our study aims to assess the effect of the vegetation treatment on the GHG fluxes. CO2 (ecosystem respiration or ER, Gross Primary Production or GPP, and Net Ecosystem Exchange) and CH4 fluxes (manual accumulation chamber), air and soil temperature, water table level, soil moisture were measured. After 18 months, half of the surface of "bare" and "Sphagnum" plots were covered by vegetation (Eriophorum angustifolium, Rynchospora alba, Trichophorum cespitosum). With time, as succession unfolds in these 2 types of station, ER and GPP increased. The sensitivity of ER to temperature increased sharply in "bare" and "Sphagnum" plots with years and became higher than the sensitivity in "control" plots. GPP increased with the total vegetation percentage cover

  3. Genetic variations among passion fruit species using rapd markers Variação genética entre espécies de maracujá utilizando marcadores rapd

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    Ana Paula de Andrade Aukar

    2002-12-01

    Full Text Available It has been evaluated the genetic variability through the use of RAPD molecular markers on the following passionflower species: Passiflora amethystina, P. caerulea, P. cincinnata, P. coccinea, P. serrato digitata, P. foetida, P. maliformis, P. alata, P. giberti, P. laurifolia, P. macrocarpa, P. nitida, P. setacea, P. suberosa, P. ligularis, P. capsularis, P. edulis Sims and its botanical variety P. edulis Sims f. flavicarpa Deg. In this research work, the analyses of the random amplified polymorphic DNA products (RAPD were employed to estimate the genetic diversity and the taxonomic linkage within the species above. The total of 21 primers were used in this study which generated 270 different polymorphic products. It was possible to detect that the Passiflora species had shown a similarity of 17,3%, and between Passiflora edulis Sims and Passiflora edulis Sims f. flavicarpa a similarity of 34,35% has been found. The rate of similarity within edulis specie is low, making it clear that a large variability between the yellow and the purple forms exists.Foram avaliadas as variações genéticas através de marcadores moleculares RAPD, as seguintes espécies de maracujá: Passiflora amethystina, P. caerulea, P. cincinnata, P. coccinea, P. serrato digitata, P. foetida, P. maliformis, P. alata, P. giberti, P. laurifolia, P. macrocarpa, P. nitida, P. setacea, P. suberosa, P. ligularis, P. capsularis, P. edulis Sims e sua variedade botânica P. edulis Sims f. flavicarpa Deg. Neste estudo, a análise dos produtos da amplificação ao acaso do DNA polimórfico (RAPD foi usada para estimar a diversidade genética e as relações taxonômicas entre as espécies. Foram utilizados 21 "primers", que produziram um total de 270 bandas polimórficas. Verificou-se que as espécies de Passiflora apresentaram uma média de similaridade de 17,3%, e entre Passiflora edulis Sims e Passiflora edulis Sims f. flavicarpa, de 34,35%. Pode-se perceber que o valor de

  4. Scutellaria cuevasiana and Scutellaria sublitoralis (Lamiaceae, two new species from Jalisco and Nayarit, Mexico Scutellaria cuevasiana y Scutellaria sublitoralis (Lamiaceae, dos especies nuevas de Jalisco y Nayarit, México

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    Jesús Guadalupe González-Gallegos

    2013-03-01

    Full Text Available Scutellaria cuevasiana J. G. González et A. Vázquez and Scutellaria sublitoralis J. G. González are described and illustrated. Scutellaria cuevasiana fits best within section Uliginosae (Epling Epling. It is morphologically close to S. blepharophylla Epling, S. rosei Fernald and S. seleriana Loes. It differs from them by its magenta corollas, small and sessile floral bracts, longer petioles and bigger leaves. Scutellaria sublitoralis does not manifest any clear morphological affinity with species of the sections enumerated by Epling. It could be related to species in sections Pallidiflorae Epling or Uliginosae, particularly with the "Scutellaria ovata" or "Scutellaria caerulea" species groups defined by Paton. It is morphologically similar to S. pallidiflora Epling; however, it can be recognized by wider leaves with usually cordate to subcordate bases, persistent floral bracts, floral axis and calyces without glandular-capitate hairs, longer corollas, and narrower toward the throat.Se describen e ilustran Scutellaria cuevasiana J. G. González et A. Vázquez y Scutellaria sublitoralis J. G. González. Scutellaria cuevasiana se ajusta mejor a la sección Uliginosae (Epling Epling; es cercana en su morfología a S. blepharophylla Epling, S. rosei Fernald y S. seleriana Loes. Difiere de las mismas debido a sus corolas magenta, brácteas florales más pequeñas y sésiles, peciolos más largos y hojas más grandes. Scutellaria sublitoralis no muestra una clara afinidad con las especies de las secciones establecidas por Epling; podría estar relacionada con las especies de las secciones Pallidiflorae Epling o Uliginosae, particularmente con los grupos de especies de "Scutellaria ovata" y "Scutellaria caerulea" definidos por Paton. Es morfológicamente similar a S. pallidiflora Epling; sin embargo, puede reconocerse por sus hojas más anchas con bases por lo usual cordadas a subcordadas, brácteas florales persistentes, eje floral y cálices sin

  5. Diversidade e abundância sazonal da avifauna em duas planícies de maré no estuário da baía da Babitonga, norte de Santa Catarina

    Directory of Open Access Journals (Sweden)

    Alexandre V. Grose

    2013-03-01

    Full Text Available Informações sobre a ocorrência de aves nos ambientes estuarinos de Santa Catarina ainda são escassas. O objetivo deste trabalho foi registrar a diversidade, abundância e variação sazonal das aves em duas planícies de maré na baía da Babitonga. As amostragens foram realizadas durante um ano (maio de 2006 a abril 2007. No total foram identificadas 25 espécies, sendo 15 no Linguado (LG e 24 na desembocadura do Monte de Trigo (MT. Apenas uma espécie foi exclusiva no LG Himantopus melanurus (Vieillot, 1817, enquanto dez espécies ocorreram apenas no MT. O número de espécies em MT foi superior ao encontrado em LG. A espécie mais abundante em MT foi Rynchops niger (Linnaeus, 1758 e em LG foi Egretta caerulea (Linnaeus, 1758. Durante alguns meses foram registradas espécies migratórias neárticas em ambas as áreas, o que representou um acréscimo na diversidade. A extensa planície de maré formada pelo fechamento do canal do Linguado tem sido muito ocupada por aves, possivelmente pela maior disponibilidade de alimento.

  6. Single-strand conformation polymorphism-based analysis reveals genetic variation within Spirometra erinacei (Cestoda: Pseudophyllidea) from Australia.

    Science.gov (United States)

    Zhu, X Q; Beveridge, I; Berger, L; Barton, D; Gasser, R B

    2002-04-01

    This study examined genetic variability within Spirometra erinacei (Cestoda: Pseudophyllidea) from different host species and geographical origins in Australia using a polymerase chain reaction (PCR)-based mutation detection approach, followed by DNA sequencing. Part of the cytochrome c oxidase subunit 1 gene (p cox 1) was amplified by PCR, scanned for sequence variation by single-strand conformation polymorphism (SSCP), and representative samples from different host species were selected for DNA sequencing. While no variation in SSCP profiles was detected among S. erinacei samples from dog, fox, cat, tiger snake and python, they differed in profile from 5 specimens from the green tree frog (Litoria caerulea). This was supported by sequence data which demonstrated that p cox 1 sequences of samples from the latter host species differed at 8 of 393 (2%) nucleotide positions from those from the non-amphibian host. Using a nucleotide difference in the p cox 1 sequence, a PCR-linked restriction fragment length polymorphism (RFLP) could be employed to unequivocally delineate between samples from non-amphibian and amphibian hosts. These findings demonstrate the existence of at least two genotypes within S. erinacei, which may have important implications for studying the epidemiology, ecology and systematics of this cestode.

  7. Gryporhynchidae (Cestoda: Cyclophyllidea) in Mexico: species list, hosts, distribution and new records.

    Science.gov (United States)

    Ortega-Olivares, Mirza P; García-Prieto, Luis; García-Varela, Martín

    2014-05-12

    As a result of this study, 8 new host (Botaurus lentiginosus for Glossocercus caribaensis and Valipora mutabilis; Egretta caerulea for Valipora minuta; Egretta thula for Glossocercus cyprinodontis; Egretta tricolor and Nycticorax nycticorax for Glossocercus caribaensis; Pelecanus occidentalis and Platalea ajaja for Paradilepis caballeroi) and 31 new locality records for gryporhynchid cestode species in Mexico are presented. With these data, the total number of species of this group of helminths in Mexico becomes 25 (19 named species and 6 unidentified taxa), which have been registered as parasites of fishes (47 host species) and (or) birds (20 host species). This information comes from 102 localities, pertaining to 20 of 32 Mexican states. Five of the 25 taxa have been exclusivelly collected in fishes, 7 in fish-eating birds, and 13 in both groups of hosts. The most frequent metacestodes found in Mexican fishes are the merocercoids of Cyclustera ralli, Valipora mutabilis, Parvitaenia cochlearii and Valipora campylancristrota; in adult stage, Glossocercus caribaensis was the species with the largest host spectrum, while Paradilepis caballeroi has the widest distribution range. The work includes parasite/host lists, as well as habitat, distribution, references and information on specimens' deposition.

  8. Assessment of heavy metals pollution in the gulf of Gabes (Tunisia using four mollusk species

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    L. RABAOUI

    2013-08-01

    Full Text Available Since the establishment of the ‘Tunisian Chemical Group’ in Gabes city, Tunisia, no serious investigations were carried out about the heavy metal pollution in Gabes gulf.  In the present study, the contents of four heavy metals were assessed in four mollusk species (two gastropods, Gibbula ardens and Patella caerulea, and two bivalves, Pinctada radiata and Pinna nobilis, collected from twelve coastal stations. The results obtained showed generally that high concentrations of heavy metals were recorded in the central area of Gabes gulf, nearer to Gabes city; the low concentrations were in contrast found at the edges of this gulf, which is probably due to the chemical pollution generated from the huge industry of phosphoric acid in Gabes city. Comparing the results found with the four examined species, the lowest concentrations were noted with the two bivalve species P. radiata and P. nobilis. The highest heavy metals’ concentrations, noted during this study, are comparable to the findings of other authors in other areas, but they are considerably beyond the standards. A remediation action is necessarily needed either by reducing the amount of heavy metals in the phosphgypums quantities thrown directly in the sea or by stopping completely this harmful industry to protect the marine life in the area. A remediation action is necessarily needed to protect the marine life in the area.

  9. Chemical kin label in seabirds

    Science.gov (United States)

    Célérier, Aurélie; Bon, Cécile; Malapert, Aurore; Palmas, Pauline; Bonadonna, Francesco

    2011-01-01

    Chemical signals yield critical socio-ecological information in many animals, such as species, identity, social status or sex, but have been poorly investigated in birds. Recent results showed that chemical signals are used to recognize their nest and partner by some petrel seabirds whose olfactory anatomy is well developed and which possess a life-history propitious to olfactory-mediated behaviours. Here, we investigate whether blue petrels (Halobaena caerulea) produce some chemical labels potentially involved in kin recognition and inbreeding avoidance. To overcome methodological constraints of chemical analysis and field behavioural experiments, we used an indirect behavioural approach, based on mice olfactory abilities in discriminating odours. We showed that mice (i) can detect odour differences between individual petrels, (ii) perceive a high odour similarity between a chick and its parents, and (iii) perceive this similarity only before fledging but not during the nestling developmental stage. Our results confirm the existence of an individual olfactory signature in blue petrels and show for the first time, to our knowledge, that birds may exhibit an olfactory kin label, which may have strong implications for inbreeding avoidance. PMID:21525047

  10. The Importance of Agriculture-Dominated Landscapes and Lack of Field Border Effect for Early-Succession Songbird Nest Success

    Directory of Open Access Journals (Sweden)

    Jason D. Riddle

    2010-12-01

    Full Text Available In recent decades, many early-succession songbird species have experienced severe and widespread declines, which often are related to habitat destruction. Field borders create additional or enhance existing early-succession habitat on farmland. However, field border shape and the landscape context surrounding farms may influence the effectiveness of field borders in contributing to the stabilization or increase of early-succession bird populations. We examined the influence of linear and nonlinear field borders on farms in landscapes dominated by either agriculture or forests on nest success and Brown-headed Cowbird (Molothrus ater brood parasitism of Indigo Bunting (Passerina cyanea and Blue Grosbeak (Passerina caerulea nests combined. Field border establishment did not affect nest survival probability and brood parasitism frequency of Indigo Bunting and Blue Grosbeak nests. Indigo Bunting/Blue Grosbeak nest success probability was more than twice as high in agriculture-dominated landscapes (39% than in forested landscapes (17%, and brood parasitism frequency was high (33% but did not differ between landscapes. Edges in agriculture-dominated landscapes can be higher-quality habitats for early-succession birds than edges in forest-dominated landscapes, but our field border treatments did not enhance nest success for these birds on farms in either landscape.

  11. Combining Breeding Bird Survey and distance sampling to estimate density of migrant and breeding birds

    Science.gov (United States)

    Somershoe, S.G.; Twedt, D.J.; Reid, B.

    2006-01-01

    We combined Breeding Bird Survey point count protocol and distance sampling to survey spring migrant and breeding birds in Vicksburg National Military Park on 33 days between March and June of 2003 and 2004. For 26 of 106 detected species, we used program DISTANCE to estimate detection probabilities and densities from 660 3-min point counts in which detections were recorded within four distance annuli. For most species, estimates of detection probability, and thereby density estimates, were improved through incorporation of the proportion of forest cover at point count locations as a covariate. Our results suggest Breeding Bird Surveys would benefit from the use of distance sampling and a quantitative characterization of habitat at point count locations. During spring migration, we estimated that the most common migrant species accounted for a population of 5000-9000 birds in Vicksburg National Military Park (636 ha). Species with average populations of 300 individuals during migration were: Blue-gray Gnatcatcher (Polioptila caerulea), Cedar Waxwing (Bombycilla cedrorum), White-eyed Vireo (Vireo griseus), Indigo Bunting (Passerina cyanea), and Ruby-crowned Kinglet (Regulus calendula). Of 56 species that bred in Vicksburg National Military Park, we estimated that the most common 18 species accounted for 8150 individuals. The six most abundant breeding species, Blue-gray Gnatcatcher, White-eyed Vireo, Summer Tanager (Piranga rubra), Northern Cardinal (Cardinalis cardinalis), Carolina Wren (Thryothorus ludovicianus), and Brown-headed Cowbird (Molothrus ater), accounted for 5800 individuals.

  12. Embedding 3D models of biological specimens in PDF publications.

    Science.gov (United States)

    Ruthensteiner, Bernhard; Hess, Martin

    2008-11-01

    By providing two examples, the option for embedding 3D models in electronic versions of life science publications is presented. These examples, presumably representing the first such models published, are developmental stages of an evertebrate (Patella caerulea, Mollusca) and a vertebrate species (Psetta maxima, Teleostei) obtained from histological section series reconstruction processed with the software package Amira. These surface rendering models are particularly suitable for a PDF file because they can easily be transformed to a file format required and components may be conveniently combined and hierarchically arranged. All methodological steps starting from specimen preparation until embedding of resulting models in PDF files with emphasis on conversion of Amira data to the appropriate 3D file format are explained. Usability of 3D models in PDF documents is exemplified and advantages over 2D illustrations are discussed, including better explanation capabilities for spatial arrangements, higher information contents, and limiting options for disguising results by authors. Possibilities for additional applications reaching far beyond the examples presented are suggested. Problems such as long-term compatibility of file format and hardware plus software, editing and embedding of files, file size and differences in information contents between printed and electronic version will likely be overcome by technical development and increasing tendency toward electronic at the cost of printed publications. Since 3D visualization plays an increasing role in manifold disciplines of science and appropriate tools for the popular PDF format are readily available, we propose routine application of this way of illustration in electronic life science papers.

  13. When the going gets rough – studying the effect of surface roughness on the adhesive abilities of tree frogs

    Science.gov (United States)

    Crawford, Niall; Endlein, Thomas; Pham, Jonathan T; Riehle, Mathis

    2016-01-01

    Summary Tree frogs need to adhere to surfaces of various roughnesses in their natural habitats; these include bark, leaves and rocks. Rough surfaces can alter the effectiveness of their toe pads, due to factors such as a change of real contact area and abrasion of the pad epithelium. Here, we tested the effect of surface roughness on the attachment abilities of the tree frog Litoria caerulea. This was done by testing shear and adhesive forces on artificial surfaces with controlled roughness, both on single toe pads and whole animal scales. It was shown that frogs can stick 2–3 times better on small scale roughnesses (3–6 µm asperities), producing higher adhesive and frictional forces, but relatively poorly on the larger scale roughnesses tested (58.5–562.5 µm asperities). Our experiments suggested that, on such surfaces, the pads secrete insufficient fluid to fill the space under the pad, leaving air pockets that would significantly reduce the Laplace pressure component of capillarity. Therefore, we measured how well the adhesive toe pad would conform to spherical asperities of known sizes using interference reflection microscopy. Based on experiments where the conformation of the pad to individual asperities was examined microscopically, our calculations indicate that the pad epithelium has a low elastic modulus, making it highly deformable. PMID:28144558

  14. FREQUENCY DISTRIBUTIONS OF 90SR AND 137CS CONCENTRATIONS IN AN ECOSYSTEM OF THE 'RED FOREST' AREA IN THE CHERNOBYL EXCLUSION ZONE

    Energy Technology Data Exchange (ETDEWEB)

    Farfan, E.; Jannik, T.; Caldwell, E.

    2011-10-01

    In the most highly contaminated region of the Chernobyl Exclusion Zone: the 'Red Forest' site, the accumulation of the major dose-affecting radionuclides ({sup 90}Sr and {sup 137}Cs) within the components of an ecological system encompassing 3,000 m{sup 2} were characterized. The sampled components included soils (top 0-10 cm depth), Molina caerulea (blue moor grass), Camponotus vagus (carpenter ants) and Pelobates fuscus (spade-footed toad). In a comparison among the components of this ecosystem, the {sup 90}Sr and {sup 137}Cs concentrations measured in 40 separate grids exhibited significant differences, while the frequency distribution of the values were close to a logarithmically normal leptokurtic distribution with a significant right-side skew. While it is important to identify localized areas of high contamination or 'hot spots,' including these values in the arithmetic mean may overestimate the exposure risk. In component sample sets that exhibited logarithmically normal distribution, the geometrical mean more accurately characterizes a site. Ideally, risk assessment is most confidently achieved when the arithmetic and geometrical means are most similar, meaning the distribution approaches normal. Through bioaccumulation, the highest concentrations of {sup 90}Sr and {sup 137}Cs were measured in the blue moor grass and spade-footed toad. These components also possessed distribution parameters that shifted toward a normal distribution.

  15. Rapid movement and instability of an invasive hybrid swarm.

    Science.gov (United States)

    Glotzbecker, Gregory J; Walters, David M; Blum, Michael J

    2016-07-01

    Unstable hybrid swarms that arise following the introduction of non-native species can overwhelm native congeners, yet the stability of invasive hybrid swarms has not been well documented over time. Here, we examine genetic variation and clinal stability across a recently formed hybrid swarm involving native blacktail shiner (Cyprinella venusta) and non-native red shiner (C. lutrensis) in the Upper Coosa River basin, which is widely considered to be a global hot spot of aquatic biodiversity. Examination of phenotypic, multilocus genotypic, and mitochondrial haplotype variability between 2005 and 2011 revealed that the proportion of hybrids has increased over time, with more than a third of all sampled individuals exhibiting admixture in the final year of sampling. Comparisons of clines over time indicated that the hybrid swarm has been rapidly progressing upstream, but at a declining and slower pace than rates estimated from historical collection records. Clinal comparisons also showed that the hybrid swarm has been expanding and contracting over time. Additionally, we documented the presence of red shiner and hybrids farther downstream than prior studies have detected, which suggests that congeners in the Coosa River basin, including all remaining populations of the threatened blue shiner (Cyprinella caerulea), are at greater risk than previously thought.

  16. Quantifying anuran microhabitat use to infer the potential for parasite transmission between invasive cane toads and two species of Australian native frogs.

    Science.gov (United States)

    Pizzatto, Lígia; Both, Camila; Shine, Richard

    2014-01-01

    Parasites that are carried by invasive species can infect native taxa, with devastating consequences. In Australia, invading cane toads (Rhinella marina) carry lungworm parasites (Rhabdias pseudosphaerocephala) that (based on previous laboratory studies) can infect native treefrogs (Litoria caerulea and L. splendida). To assess the potential of parasite transmission from the invader to the native species (and from one infected native frog to another), we used surveys and radiotelemetry to quantify anuran microhabitat use, and proximity to other anurans, in two sites in tropical Australia. Unsurprisingly, treefrogs spent much of their time off the ground (especially by day, and in undisturbed forests) but terrestrial activity was common at night (especially in anthropogenically modified habitats). Microhabitat overlap between cane toads and frogs was generally low, except at night in disturbed areas, whereas overlap between the two frog species was high. The situations of highest overlap, and hence with the greatest danger of parasite transmission, involve aggregations of frogs within crevices by day, and use of open ground by all three anuran species at night. Overall, microhabitat divergence between toads and frogs should reduce, but not eliminate, the transmission of lungworms from invasive toads to vulnerable native frogs.

  17. Complex patterns of autopolyploid evolution in alfalfa and allies (Medicago sativa; Leguminosae).

    Science.gov (United States)

    Havananda, Tee; Brummer, E Charles; Doyle, Jeff J

    2011-10-01

    Although there is growing evidence that autopolyploidy is a widespread and important evolutionary phenomenon, it has received less attention than allopolyploidy. Medicago sativa comprises several diploid and autopolyploid taxa, including autotetraploid cultivated alfalfa, and affords an opportunity to elucidate the evolutionary history of a morphologically and genetically complex autopolyploid system. Phylogenies and haplotype networks were constructed from two chloroplast noncoding regions (rpl20-rps12 and trnS-trnG spacers) across seven diploid and polyploid infraspecific taxa of M. sativa and five additional closely related Medicago species, and genetic differentiation was estimated. The two most prominent M. sativa autopolyploids have contrasting evolutionary histories. Chloroplast data support a simple autopolyploid origin of subsp. sativa (alfalfa) from diploid subsp. caerulea, from which it is distinguishable in several quantitative characters. In contrast, morphologically identical diploid and autopolyploid cytotypes of subsp. falcata were found to possess very different chloroplast haplotypes, suggesting past introgression from M. prostrata into the polyploid. Despite the presence of hybrids between tetraploid subspecies falcata and sativa, there was little evidence of introgression of chloroplast genomes from either subspecies into the other. Autopolyploid evolution in M. sativa is complicated and has followed very different paths in different subspecific taxa. The potential exists for gene flow in virtually all combinations of subspecies both within and between ploidies, yet despite the existence of hybrids, morphologically and genetically distinctive subspecies persist.

  18. Silicified structures affect leaf optical properties in grasses and sedge.

    Science.gov (United States)

    Klančnik, Katja; Vogel-Mikuš, Katarina; Gaberščik, Alenka

    2014-01-05

    Silicon (Si) is an important structural element that can accumulate at high concentrations in grasses and sedges, and therefore Si structures might affect the optical properties of the leaves. To better understand the role of Si in light/leaf interactions in species rich in Si, we examined the total Si and silica phytoliths, the biochemical and morphological leaf properties, and the reflectance and transmittance spectra in grasses (Phragmites australis, Phalaris arundinacea, Molinia caerulea, Deschampsia cespitosa) and sedge (Carex elata). We show that these grasses contain >1% phytoliths per dry mass, while the sedge contains only 0.4%. The data reveal the variable leaf structures of these species and significant differences in the amount of Si and phytoliths between developing and mature leaves within each species and between grasses and sedge, with little difference seen among the grass species. Redundancy analysis shows the significant roles of the different near-surface silicified leaf structures (e.g., prickle hairs, cuticle, epidermis), phytoliths and Si contents, which explain the majority of the reflectance and transmittance spectra variability. The amount of explained variance differs between mature and developing leaves. The transmittance spectra are also significantly affected by chlorophyll a content and calcium levels in the leaf tissue.

  19. Synanthropization of the Baltic-type raised bog “Roby” (NW Poland

    Directory of Open Access Journals (Sweden)

    Sotek Zofia

    2015-06-01

    Full Text Available Raised and transitional peat bogs, despite their considerable resistance to synanthropization, as a result of anthropogenic transformations are exposed to the colonisation by alien species. One of them is the peatland “Roby”, where, in the years 2007-2009 and 2014, floristic, phytosociological and soil studies were carried out in order to record the signs of ongoing synanthropization. Conducted observations and analyses indicated that the expansion of willows has taken place and at present they occupy a large part of the bog, encroaching into bog birch forest and successfully competing with Myrica gale. Progressive peat mineralisation and constructed surfaced roads within the bog, contributed to the appearance and wide distribution of synanthropic species, such as: Urtica dioica, Impatiens parviflora and Spiraea salicifolia. Raised bog communities and their characteristic species occur on a few fragments of the bog, in north-western part, where water regime is shaped mainly by precipitation and peat deposit is fairly well-preserved. At the same time, in the patches of these communities, a distinct unfavourable increase in the share of Molinia caerulea is observed.

  20. Phylogenetic analysis of avian poxviruses among free-ranging birds of Virginia.

    Science.gov (United States)

    Adams, Cary J; Feldman, Sanford H; Sleeman, Jonathan M

    2005-12-01

    Polymerase chain reaction was used to amplify a portion of the avian poxvirus core 4b gene of infected free-ranging birds that presented at the Wildlife Center of Virginia during the 2003 and early 2004 years. The species of bird infected were a great blue heron (Ardea herodias), two American crows (Corvus brachyrhyncos), two American robins (Turdus migratorius), two mourning doves (Zenaida macroura), a red-tailed hawk (Buteo jamaicensis), a blue-gray gnatcatcher (Polioptila caerulea), a northern mockingbird (Mimus polyglottos), a house finch (Carpodacus mexicanus), and a northern cardinal (Cardinalis cardinalis). Phylogenetic analysis was performed using the consensus sequences determined for each avian case in Virginia in combination with avian poxvirus core 4b gene sequence from isolates previously described in Europe and that of vaccinia virus. Alignment of DNA sequences identified areas of point mutations and, in the case of a single mourning dove, the incorporation of a triplet of nucleotides. Maximum-likelihood analysis grouped the 2003-2004 Virginia avian poxviruses into a clade distinct from those reported in European free-ranging birds, with the exception of a single case in a mourning dove that clustered within one European clade. The cladogram that resulted from our analysis of the European isolates is in agreement with those previously published. This study identified a distinct clade of avian poxvirus unique from four clades previously described and associated with epornitics in free-ranging birds, where the core 4b gene DNA sequence has been the basis of comparison.

  1. A new deepwater legskate, Sinobatis kotlyari n. sp. (Rajiformes, Anacanthobatidae) from the southeastern Indian Ocean on Broken Ridge.

    Science.gov (United States)

    Stehmann, Matthias F W; Weigmann, Simon

    2016-11-10

    Sinobatis kotlyari n. sp. is described, based on the nearly adult 331 mm TL holotype male from 1400 m depth in the southeastern Indian Ocean at Broken Ridge. The new species is assigned to Sinobatis due to mainly characters of its clasper and cranium fontanelle distinguishing it from congeners and other anacanthobatid skates with clasper features known. It further differs from its morphologically closest congener, S. borneensis, which is only known from the northwestern Pacific Ocean, e.g. in larger maturing size, longer snout and head, the absence of a snout filament and skin fold on tail, a longer caudal fin, and in colouration. The two congeners known from the eastern Indian Ocean, S. bulbicauda and S. cae-rulea, mature at much larger size, grow to larger maximum size and differ in numerous morphometric and meristic           characters, as well as in colouration. The type locality appears to be very remote as compared with other Indian Ocean legskates, which have primarily been found on continental and insular slopes.

  2. Analysis of the secondary structure of mitochondrial LSU rRNA of Peruvian land snails (Orthalicidae: Gastropoda

    Directory of Open Access Journals (Sweden)

    Jorge Ramirez Ramirez

    2011-05-01

    Full Text Available The alignment of ribosomal genes is difficult due to insertion and deletion events of nucleotides, making the alignment ambiguous. This can be overcome by using information from the secondary structure of ribosomal genes. The aim of this study was to evaluate the utility of the secondary structure in improving the alignment of the 16S rRNA gene in land snails of the family Orthalicidae. We assessed 10 Orthalicid species (five genera. Total DNA was isolated and the partial 16S rRNA gene was amplified and sequenced using internal primers. The sequences were aligned with ClustalX and manually corrected, in DCSE format, using the 16S rRNA secondary structure of Albinaria caerulea (Pulmonata: Clausiliidae. The sequences obtained ranged from 323 to 345 bp corresponding to parts of both domains IV and V of the 16S rRNA gene. The secondary structure was recovered by homology using RnaViz 2.0. Most stems are conserved, and in general the loops are more variable. The compensatory mutations in stems are related to maintenance of the structure. The absence of a bulge-stem-loop in domain V places the family Orthalicidae within the Heterobranchia.

  3. Frequency distributions of 90Sr and 137Cs concentrations in an ecosystem of the "Red Forest" area in the Chernobyl exclusion zone.

    Science.gov (United States)

    Gaschak, Sergey P; Makliuk, Yulia A; Maksimenko, Andrey M; Bondarkov, Mikhail D; Chizhevsky, Igor; Caldwell, Eric F; Jannik, G Timothy; Farfán, Eduardo B

    2011-10-01

    In the most highly contaminated region of the Chernobyl Exclusion Zone, the "Red Forest" site, the accumulation of the major dose-affecting radionuclides (90Sr and 137Cs) within the components of an ecological system encompassing 3,000 m(2) was characterized. The sampled components included soils (top 0-10 cm depth), Molina caerulea (blue moor grass), Camponotus vagus (carpenter ants), and Pelobates fuscus (spade-footed toad). In a comparison among the components of this ecosystem, the 90Sr and 137Cs concentrations measured in 40 separate grids exhibited significant differences, while the frequency distribution of the values was close to a logarithmically-normal leptokurtic distribution with a significant right-side skew. While it is important to identify localized areas of high contamination or "hot spots," including these values in the arithmetic mean may overestimate the exposure risk. In component sample sets that exhibited logarithmically normal distribution, the geometric mean more accurately characterizes a site. Ideally, risk assessment is most confidently achieved when the arithmetic and geometric means are most similar, meaning the distribution approaches normal. Through bioaccumulation, the highest concentrations of 90Sr and 137Cs were measured in the blue moor grass and spade-footed toad. These components also possessed distribution parameters that shifted toward a normal distribution.

  4. Patrones de crecimiento postnatal en ocho especies de garzas (Ciconiiformes: Ardeidae

    Directory of Open Access Journals (Sweden)

    Dennis Denis Ávila

    2011-06-01

    Full Text Available El crecimiento en aves forma parte de las estrategias reproductivas y su implicación ecológica ha sido profundamente debatida. En este trabajo se describe el crecimiento del pico, peso y tarso de ocho garzas (Aves: Ardeidae en la ciénaga de Birama, Cuba. Para ello, entre 1998-2006, se midieron en días alternos un total de 714 pichones de Butorides virescens, Bubulcus ibis, Egretta thula, E. tricolor, E. caerulea, E. rufescens, Ardea alba y Nycticorax nycticorax, durante sus dos primeras semanas de vida. Se hicieron ajustes a las curvas Logística y de Gompertz y se usó regresiones no lineales y valores adultos como asíntotas, además se determinaron las variables que describenel crecimiento. El tamaño de los pichones al eclosionar fue similar al encontrado en otras localidades, con CV entre 10-19% y diferencias relativas al tamaño adulto. Las ecuaciones de Gompertz tuvieron menos residuos en todos los casos. Entonces, se identificaron dos procesos fundamentales de extensión en el crecimiento de cada estructura: uno físico y otro de duración, entre B. virescens y E. alba. Nycticorax, B. ibis y E. rufescens mostraron variaciones que los diferenciaron del resto. Los resultados apoyan la hipótesis de la microevolución de Ardeidae por hipermorfosis, por un retardo en el momento final del crecimiento.

  5. The amount of carbon in the undergrowth biomass of main types of forests stands in Poland

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    Janyszek Sławomir

    2015-12-01

    Full Text Available The sequestration of carbon in biomass of herb and moss layers of forest ecosystems is relatively less studied, than analogical processes in trees biomass and soil organic mass. The paper presents mean values of carbon concentration and mean amounts of dry mass of plant material in the herb and moss layer of phytocoenoses formed under canopy of stands of main forest-forming species of trees in Poland. The parameters were studied for beech, birch, oak, alder, pine, fir and spruce forest stands, for most of the particular age classes. The studied plots were contained in following plant associations and communities: Ribo nigri-Alnetum, Fraxino-Alnetum, Galio odorati-Fagetum, Luzulo luzuloidis-Fagetum, Molinio caeruleae-Quercetum roboris, Calamagrostio-Quercetum petraeae, Abietetum polonicum, Abieti-Piceetum montanum, Calamagrostio villosae-Piceetum, as well as anthropogenic communities: Betula pendula comm. on Leucobryo-Pinetum habitat, Larix decidua comm. on Tilio-Carpinetum habitat, Pinus sylvestris comm. on Tilio-Carpinetum habitat, Picea abies comm. on Luzulo pilosae-Fagetum habitat (in lowland and Picea abies comm. on Luzulo luzuloidis-Fagetum habitat (in lower mountain localities. The relatively highest carbon amount was observed in oak forests, pine forests and in older age classes of lowland beech forest, where the carbon concentration in dry mass reaches from 60 to 81%. The lowest concentrations were determined for lowland spruce forests, highland fir forests and for alder forests. The carbon concentration reached in these types of ecosystems from 39 to 41%.

  6. Major histocompatibility complex class II compatibility, but not class I, predicts mate choice in a bird with highly developed olfaction.

    Science.gov (United States)

    Strandh, Maria; Westerdahl, Helena; Pontarp, Mikael; Canbäck, Björn; Dubois, Marie-Pierre; Miquel, Christian; Taberlet, Pierre; Bonadonna, Francesco

    2012-11-01

    Mate choice for major histocompatibility complex (MHC) compatibility has been found in several taxa, although rarely in birds. MHC is a crucial component in adaptive immunity and by choosing an MHC-dissimilar partner, heterozygosity and potentially broad pathogen resistance is maximized in the offspring. The MHC genotype influences odour cues and preferences in mammals and fish and hence olfactory-based mate choice can occur. We tested whether blue petrels, Halobaena caerulea, choose partners based on MHC compatibility. This bird is long-lived, monogamous and can discriminate between individual odours using olfaction, which makes it exceptionally well suited for this analysis. We screened MHC class I and II B alleles in blue petrels using 454-pyrosequencing and quantified the phylogenetic, functional and allele-sharing similarity between individuals. Partners were functionally more dissimilar at the MHC class II B loci than expected from random mating (p = 0.033), whereas there was no such difference at the MHC class I loci. Phylogenetic and non-sequence-based MHC allele-sharing measures detected no MHC dissimilarity between partners for either MHC class I or II B. Our study provides evidence of mate choice for MHC compatibility in a bird with a high dependency on odour cues, suggesting that MHC odour-mediated mate choice occurs in birds.

  7. Metals in molluscs and algae: A north-south Tyrrhenian Sea baseline

    Energy Technology Data Exchange (ETDEWEB)

    Conti, Marcelo Enrique, E-mail: marcelo.conti@uniroma1.it [Dipartimento Studi per lo Sviluppo (SPES), Sapienza, Universita di Roma, Via del Castro Laurenziano 9, 00161 Rome (Italy); Finoia, Maria Grazia [Istituto Superiore per la Protezione e la Ricerca Ambientale, Via di Casalotti 300, 00166 Rome (Italy)

    2010-09-15

    We develop a 800 km long relative baseline of metal pollution for the Tyrrhenian Sea, from the north of Naples to south of Sicily (Italy), based on spatio-temporal (1997-2004) concentrations of trace metals in marine organisms and on the bioaccumulative properties of those organisms. The study concerns sites in the gulf of Gaeta-Formia, near Naples, and three islands north, west, and south of Sicily: Ustica, Favignana and Linosa. The five metals are: cadmium, chromium, copper, lead, and zinc; the species include: Monodonta turbinata (n = 161), Patella caerulea (n = 244) and the algae Padina pavonica (n = 84). We use Johnson's (1949) probabilistic method to determine the type of distribution that accounts for our data. It is a system of frequency curves that represents the transformation of the standard normal curves. We find an N-S pollution gradient in molluscs considered: the lowest metal pollution occurs around the Sicilian islands. Our method can accurately characterize marine pollution by contributing to: policy-making, coastal resources management, the assessments of environmental damages from marine accidents and other events. The method here presented is a useful tool for pollution comparisons purposes among ecosystems (i.e., risk monitoring) and it is an ideal starting point for its application on a global scale.

  8. Patella sp. (Gastropoda: Mollusca Mukus Salgısına Denizel Bakterilerin Yerleşimi.

    Directory of Open Access Journals (Sweden)

    Beria Falakalı Mutaf

    2015-12-01

    Full Text Available Tutunma ve kayma hareketleri gösteren Patella türlerinin oluşturduğu mukus salgısı mikroorganizmalar için bir yapışma ortamıdır. Türlere göre mukus salgısının bakterilerin çoğalma potansiyellerine etkisinin araştırılması amaçlanmış, deniz suyundan izole edilen Vibrio fluvialis ve V. furnissii türleri Patella caerulea ve P. rustica mukusuna aşılanmıştır. Yapışma yoğunlukları karşılaştırmalı olarak kristal viyole ile boyanmış lamlarda ışık mikroskobu düzeyinde belirlenmiştir. Vibrio türlerinin mukus tercihleri Patella türlerine göre farklılık göstermiştir. Bu çalışma bulguları, Patella sp. mukus tabakasının kaya üzerinde denizel bakterilerin yerleşimi açısından önemini ve bu bakterilerin diğer organizmalar için uyarıcı etki oluşturabileceğini düşündürmektedir

  9. The size structure of ramets in Dianthus superbus L. in mosaic meadow vegetation

    Directory of Open Access Journals (Sweden)

    Kinga Kostrakiewicz-Gierałt

    2013-10-01

    Full Text Available The present investigations were carried out in the years 2010–2012 in Kraków-Opatkowice (Southern Poland. The observations were conducted in patches of abandoned Molinietum caeruleae meadows with different dominant species. Patch LM was dominated by low meadow species, forming small procumbent shoots and delicate belowground organs; patch TM was occupied by tall-growing taxa creating large tussocks or robust rhizomes; patch SH was overgrown by shrubs and trees with wide spreading roots. In all patches, the number of ramet clusters of Dianthus superbus was low and constant during the whole study period. All populations showed signs of advanced senility due to the absence of individuals in pre-reproductive stages and the occurrence of generative ramet clusters only. The total number of aboveground units per ramet cluster declined, while the leaf length, height of vegetative and generative stems as well as the size of inflorescences and flowers increased from patch LM to patch TM to patch SH. The presented results provide valuable data concerning the state of ramet clusters studied and their prospects for survival in inhabited sites.

  10. Assessment of heavy metals pollution in the gulf of Gabes (Tunisia using four mollusk species

    Directory of Open Access Journals (Sweden)

    L. RABAOUI

    2013-12-01

    Full Text Available Since the establishment of the ‘Tunisian Chemical Group’ in Gabes city, Tunisia, no serious investigations were carried out about the heavy metal pollution in Gabes gulf.  In the present study, the contents of four heavy metals were assessed in four mollusk species (two gastropods, Gibbula ardens and Patella caerulea, and two bivalves, Pinctada radiata and Pinna nobilis, collected from twelve coastal stations. The results obtained showed generally that high concentrations of heavy metals were recorded in the central area of Gabes gulf, nearer to Gabes city; the low concentrations were in contrast found at the edges of this gulf, which is probably due to the chemical pollution generated from the huge industry of phosphoric acid in Gabes city. Comparing the results found with the four examined species, the lowest concentrations were noted with the two bivalve species P. radiata and P. nobilis. The highest heavy metals’ concentrations, noted during this study, are comparable to the findings of other authors in other areas, but they are considerably beyond the standards. A remediation action is necessarily needed either by reducing the amount of heavy metals in the phosphgypums quantities thrown directly in the sea or by stopping completely this harmful industry to protect the marine life in the area. A remediation action is necessarily needed to protect the marine life in the area.

  11. Influence of different plant species on methane emissions from soil in a restored Swiss wetland.

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    Gurbir S Bhullar

    Full Text Available Plants are a major factor influencing methane emissions from wetlands, along with environmental parameters such as water table, temperature, pH, nutrients and soil carbon substrate. We conducted a field experiment to study how different plant species influence methane emissions from a wetland in Switzerland. The top 0.5 m of soil at this site had been removed five years earlier, leaving a substrate with very low methanogenic activity. We found a sixfold difference among plant species in their effect on methane emission rates: Molinia caerulea and Lysimachia vulgaris caused low emission rates, whereas Senecio paludosus, Carex flava, Juncus effusus and Typha latifolia caused relatively high rates. Centaurea jacea, Iris sibirica, and Carex davalliana caused intermediate rates. However, we found no effect of either plant biomass or plant functional groups--based on life form or productivity of the habitat--upon methane emission. Emissions were much lower than those usually reported in temperate wetlands, which we attribute to reduced concentrations of labile carbon following topsoil removal. Thus, unlike most wetland sites, methane production in this site was probably fuelled chiefly by root exudation from living plants and from root decay. We conclude that in most wetlands, where concentrations of labile carbon are much higher, these sources account for only a small proportion of the methane emitted. Our study confirms that plant species composition does influence methane emission from wetlands, and should be considered when developing measures to mitigate the greenhouse gas emissions.

  12. The influence of neighbouring species on ecological variation of the selected subpopulations of Iris sibirica L.

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    Kostrakiewicz-Gierałt Kinga

    2013-12-01

    Full Text Available Ecological variation of the selected subpopulations of Iris sibirica L. were studied in the years 2011-2012, in the abandoned patches of Molinietum caeruleae dominated by small meadow species (Patch I, macroforbs (Patch II, largetussock grasses (Patch III, shrubs (Patch IV, as well as shrubs and trees (Patch V. The abundance of subpopulations and dimensions of aggregations of ramet clusters increased gradually from Patch I to Patch IV and subsequently declined in Patch V. During the whole study period, all subpopulations showed signs of senility due to the absence of individuals in prereproductive stages. The share of generative ramet clusters diminished, while contribution of senile and fragmentised ramet clusters increased substantially in consecutive patches. The dimensions of ramet clusters increased significantly in successive plots and years. The number and height of generative stems and production of flowers and fruits did not show the temporal variability. The abundance of generative stems was considerably lower in the plots dominated by small meadow species, than in the sites dominated by large-tussock grasses, shrubs or overgrown shrubs and trees. Both the height of flowering stems and production of flowers and fruits increased gradually from Patch I, via Patches II, III and IV, to Patch V. The augmentation of flower production might contribute to better visibility of inflorescences for pollinators, whereas an increase in the production of fruits may increase the chances for successful seed dispersal to new sites.

  13. Marine sponges (Porifera: Demospongiae) from the Gulf of México, new records and redescription of Erylus trisphaerus (de Laubenfels, 1953).

    Science.gov (United States)

    Ugalde, Diana; Gómez, Patricia; Simões, Nuno

    2015-01-19

    Marine sponges usually constitute the most diverse group of the benthic community in coral reefs. Although they are reasonably well studied at the northern Gulf of Mexico (GMx), the southern GMx is poorly known and lacks records from many major reef systems that lie off the Mexican coast. The present taxonomic study is the first sponge account from Alacranes reef, the largest coral reef system in the GMx, and from the shallow reef banks of Sisal, both in the northwest Yucatan Peninsula. The 19 species herein described represent the first sponge fauna records from these reefs. Among these, seven species represent new record for GMx: Erylus formosus, Cliona flavifodina, Spirastrella aff. mollis, Strongylacidon bermuda, Topsentia bahamensis, Agelas tubulata and Chelonaplysilla aff. erecta. Twelve species are new records for the Southern GMx: Erylus trisphaerus, Cliona amplicavata, Chondrilla caribensis, Halichondria lutea, Hymeniacidon caerulea, Axinella corrugata, Dragmacidon reticulatum, Chalinula molitba, Amphimedon caribica, A. complanata, Hyatella cavernosa and Dysidea variabilis. Additionally, a redescription of Erylus trisphaerus is presented which had not been reviewed since its original description in 1953 off Western Florida, except that it was listed for north La Habana, Cuba. 

  14. The complete mitochondrial genome of the land snail Cornu aspersum (Helicidae: Mollusca: intra-specific divergence of protein-coding genes and phylogenetic considerations within Euthyneura.

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    Juan Diego Gaitán-Espitia

    Full Text Available The complete sequences of three mitochondrial genomes from the land snail Cornu aspersum were determined. The mitogenome has a length of 14050 bp, and it encodes 13 protein-coding genes, 22 transfer RNA genes and two ribosomal RNA genes. It also includes nine small intergene spacers, and a large AT-rich intergenic spacer. The intra-specific divergence analysis revealed that COX1 has the lower genetic differentiation, while the most divergent genes were NADH1, NADH3 and NADH4. With the exception of Euhadra herklotsi, the structural comparisons showed the same gene order within the family Helicidae, and nearly identical gene organization to that found in order Pulmonata. Phylogenetic reconstruction recovered Basommatophora as polyphyletic group, whereas Eupulmonata and Pulmonata as paraphyletic groups. Bayesian and Maximum Likelihood analyses showed that C. aspersum is a close relative of Cepaea nemoralis, and with the other Helicidae species form a sister group of Albinaria caerulea, supporting the monophyly of the Stylommatophora clade.

  15. Genome-scale data suggest reclassifications in the Leisingera-Phaeobacter cluster including proposals for Sedimentitalea gen. nov. and Pseudophaeobacter gen. nov.

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    Sven eBreider

    2014-08-01

    Full Text Available Earlier phylogenetic analyses of the marine Rhodobacteraceae (class Alphaproteobacteria genera Leisingera and Phaeobacter indicated that neither genus might be monophyletic. We here used phylogenetic reconstruction from genome-scale data, MALDI-TOF mass-spectrometry analysis and a re-assessment of the phenotypic data from the literature to settle this matter, aiming at a reclassification of the two genera. Neither Phaeobacter nor Leisingera formed a clade in any of the phylogenetic analyses conducted. Rather, smaller monophyletic assemblages emerged, which were phenotypically more homogeneous, too. We thus propose the reclassification of Leisingera nanhaiensis as the type species of a new genus as Sedimentitalea nanhaiensis gen. nov., comb. nov., the reclassification of Phaeobacter arcticus and Phaeobacter leonis as Pseudophaeobacter arcticus gen. nov., comb. nov. and Pseudophaeobacter leonis comb. nov., and the reclassification of Phaeobacter aquaemixtae, Phaeobacter caeruleus and Phaeobacter daeponensis as Leisingera aquaemixtae comb. nov., Leisingera caerulea comb. nov. and Leisingera daeponensis comb. nov. The genera Phaeobacter and Leisingera are accordingly emended.

  16. Elucidating dynamic responses of North Pacific fish populations to climatic forcing: Influence of life-history strategy

    Science.gov (United States)

    Yatsu, A.; Aydin, K. Y.; King, J. R.; McFarlane, G. A.; Chiba, S.; Tadokoro, K.; Kaeriyama, M.; Watanabe, Y.

    2008-05-01

    In order to explore mechanistic linkages between low-frequency ocean/climate variability, and fish population responses, we undertook comparative studies of time-series of recruitment-related productivity and the biomass levels of fish stocks representing five life-history strategies in the northern North Pacific between the 1950s and the present. We selected seven species: Japanese sardine ( Sardinopus melanostictus) and California sardine ( Sardinopus sagax) (opportunistic strategists), walleye pollock ( Theragra chalcogramma, intermediate strategist), pink salmon ( Oncorhynchus gorbuscha, salmonic strategist), sablefish ( Anoplopoma fimbria) and Pacific halibut ( Hippoglossus stenolepis) (periodic strategists) and spiny dogfish ( Squalus acanthias, equilibrium strategist). The responses in terms of productivity of sardine, pink salmon, sablefish and halibut to climatic regime shifts were generally immediate, delayed, or no substantial responses depending on the particular regime shift year and fish stock (population). In walleye pollock, there were some periods of high productivity and low productivity, but not coincidental to climatic regime shifts, likely due to indirect climate forcing impacts on both bottom-up and top-down processes. Biomass of zooplankton and all fish stocks examined, except for spiny dogfish whose data were limited, indicated a decadal pattern with the most gradual changes in periodic strategists and most intensive and rapid changes in opportunistic strategists. Responses of sardine productivity to regime shifts were the most intense, probably due to the absence of density-dependent effects and the availability of refuges from predators when sardine biomass was extremely low. Spiny dogfish were least affected by environmental variability. Conversely, spiny dogfish are likely to withstand only modest harvest rates due to their very low intrinsic rate of increase. Thus, each life-history strategy type had a unique response to climatic

  17. Evaluation of Perennial Forage Legumes and Herbs in Six Mediterranean Environments Evaluación de Leguminosas y Hierbas Forrajeras Perennes en Seis Medioambientes Mediterráneos

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    Daniel Real

    2011-09-01

    Full Text Available There is an absence of drought tolerant herbaceous perennial forage legume and herb options other than lucerne (Medicago sativa L. for environments with Mediterranean-like climates common in extensive areas of Southern Australia, the Mediterranean basin, and Chile. Therefore, a collection of 174 forage perennial legume and herb entries from 103 species and 32 genera was evaluated for adaptation in a diverse range of Mediterranean climatic environments in Southern Australia. The seasonal rainfall distribution varied from moderately to highly winter dominant with long term average annual rainfall ranging from 318 to 655 mm. The entries were rated for productivity and persistence over 3 yr. The 12 entries identified as the most promising for winter, summer, or all-year round production included Bituminaria bituminosa (L. C.H. Stirt. var. albomarginata; Cichorium intybus L.; Cullen australasicum (Schltdl. J.W. Grimes; Dorycnium hirsutum (L. Ser.; Kennedia prostrata R. Br.; Lotononis bainesii Baker, Lotus pedunculatus Cav.; L. corniculatus L.; L. cytisoides L.; Medicago sativa subsp. sativa L.; Medicago sativa subsp. caerulea (Less. ex Ledeb. Schmalh., and M. sativa subsp. falcata (L. Arcang. These entries maintained production and persisted for the period of the evaluation, with the exception of C. intybus and L. corniculatus that declined in persistence over time. The potential role of these species in extensive grazing systems in Mediterranean climatic zones, their attributes and limitations, and current progress in developing them as useful forage plants was discussed.Existe una escasez de leguminosas y hierbas perennes herbáceas además de alfalfa (Medicago sativa L. tolerantes a sequía para ambientes con clima mediterráneo como los que se encuentran en el Sur de Australia, el Mediterráneo y Chile. Por lo tanto, una colección de 174 leguminosas perennes y hierbas correspondientes a 103 especies y 32 géneros fue evaluada por su adaptaci

  18. 异源植物提取物对稻蚜的作用研究%Effect of crude of different origin extracts from plants on rice aphid Macrosiphum avenae (Fabricius)

    Institute of Scientific and Technical Information of China (English)

    杨朗; 陈恩海; 黄立飞; 覃伟权; 方月兰

    2007-01-01

    Plant extracts including secondary compounds have become more and more popular at present. In the experiment, the repellent, tempted and lethal effect and toxicity of the plant extracts on Macrosiphum avenae (Fabricius) were studied in laboratory. The results showed that the repellent effects of Annona squamosa L., Cocos nucifer L. and Eupatorium odoratum L. on the settlement and feeding of rice aphid were high in 24 hours after treatment and the repellent index of the three plant extracts was under 0.5. The repellent index of Manilkara zapota (L.) van Royen, Psidium littorale Raddi, Mikania Micrantha H.B, Mangifera indica L., Clausena lansium (Lour.) Skeels and Didhrocephala bicolor (Roth) Schlcht.in L. was above 1.0, which illuminated these plant extracts with tempting function on rice aphid. Moreover, the lethal effects of most of plant extracts on rice aphid were weak and only the survival index of Passiflora caerulea L. and Piper betle L. was lower than 0.5 after 24 hours, and just that of Piper betle L. was lower than 0.5 after 48 hours. With the prolongation of time, the survival index rice aphid decreased and the lethal effects of plant extracts was weakened.%植物异源次生物质在害虫生态控制中具有广阔的应用前景.本研究测定了19种异源植物提取物对稻蚜的忌避、引诱作用和致死作用,结果表明:处理24h 后,番荔枝Annona squamosa L.、椰子Cocos nucifer L.、飞机草Eupatorium odoratum L.等植物的提取物对稻蚜定居取食的干扰效果较好,忌避作用指数在0.5以下;人心果Manilkara zapota (L.) van Royen、番石榴Psidium littorale Raddi、微苷菊Mikania Micrantha H.B、芒果Mangifera indica L.、黄皮Clausena lansium (Lour.) Skeels、鱼眼菊Didhrocephala bicolor (Roth) Schlcht.in L.等的忌避作用指数大于1,说明它们对稻蚜不再表现为忌避作用,而是引诱作用.绝大部分植物提取物对稻蚜的致死作用不强,处理后24h,仅西番莲Passiflora caerulea L

  19. Patrones de crecimiento postnatal en ocho especies de garzas (Ciconiiformes: Ardeidae

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    Dennis Denis Ávila

    2011-06-01

    Full Text Available El crecimiento en aves forma parte de las estrategias reproductivas y su implicación ecológica ha sido profundamente debatida. En este trabajo se describe el crecimiento del pico, peso y tarso de ocho garzas (Aves: Ardeidae en la ciénaga de Birama, Cuba. Para ello, entre 1998-2006, se midieron en días alternos un total de 714 pichones de Butorides virescens, Bubulcus ibis, Egretta thula, E. tricolor, E. caerulea, E. rufescens, Ardea alba y Nycticorax nycticorax, durante sus dos primeras semanas de vida. Se hicieron ajustes a las curvas Logística y de Gompertz y se usó regresiones no lineales y valores adultos como asíntotas, además se determinaron las variables que describenel crecimiento. El tamaño de los pichones al eclosionar fue similar al encontrado en otras localidades, con CV entre 10-19% y diferencias relativas al tamaño adulto. Las ecuaciones de Gompertz tuvieron menos residuos en todos los casos. Entonces, se identificaron dos procesos fundamentales de extensión en el crecimiento de cada estructura: uno físico y otro de duración, entre B. virescens y E. alba. Nycticorax, B. ibis y E. rufescens mostraron variaciones que los diferenciaron del resto. Los resultados apoyan la hipótesis de la microevolución de Ardeidae por hipermorfosis, por un retardo en el momento final del crecimiento.Postnatal growth patterns in eight species of herons and egrets (Ciconiiformes: Ardeidae. Avian postnatal growth has received considerable attention and its ecological implications have been deeply analyzed. In this current paper, I describe the patterns of culmen and tarsus growth, as well as of weight gain patterns in eight species of herons and egrets (Aves: Ardeidae found in the Birama Swamp in Eastern Cuba. Between 1998 and 2006, 714 nestlings of the following species were measured every two days: Butorides virescens, Bubulcus ibis, Egretta thula, E. tricolor, E. caerulea, E. rufescens, Ardea alba and Nycticorax nycticorax. Logistic and

  20. Enxertia de maracujazeiro-azedo em estacas herbáceas enraizadas de espécies de passifloras nativas Grafting of passion fruit on rooted-herbaceous cuttings of wild passiflora species

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    Renata da Costa Chaves

    2004-04-01

    Full Text Available As doenças provocadas por patógenos do solo em maracujazeiro constituem-se em um dos principais problemas para essa cultura no Brasil. Uma das alternativas de controle dessas doenças seria a utilização de porta-enxertos resistentes. Várias espécies de passifloras nativas vêm apresentando resistência a essas doenças, mas a utilização destas como porta-enxertos oriundos de sementes tem sido dificultada pelas diferenças de diâmetro entre o porta-enxerto e o enxerto da espécie comercial, o que não aconteceria caso fossem utilizadas as estacas herbáceas como porta-enxerto. No presente experimento, utilizaram-se estacas herbáceas retiradas da parte mediana de ramos de plantas de Passiflora setacea (acesso EC-PS 1, P. nitida (acesso EC-PN 1, P. caerulea (acesso EC-PC 1, P. actinia (acesso EC-PA 1 e de um híbrido F1 entre P. setacea x P. edulis f. flavicarpa comercial e tratadas com ácido naftaleno acético (ANA a 500 mg/L e mantidas em câmaras de nebulização. As enxertias do tipo "garfagem lateral no topo" foram efetuadas aos 40; 55 e 70 dias após a coleta e plantio das estacas, utilizando garfos de uma única planta de maracujazeiro-azedo. As avaliações foram efetuadas aos 145 e 150 dias após o plantio das estacas, determinando-se a porcentagem de pegamento da enxertia e de enxertos brotados e o comprimento do broto do enxerto. A produção de mudas por enxertia em estacas herbáceas enraizadas de Passiflora nitida e do híbrido F1 (P. setacea x P. edulis f. flavicarpa foi tecnicamente viável.The soil born diseases cause expressive losses in passion fruit crops in Brazil. The use of resistant rootstocks is an alternative to control these diseases. Several wild species of Passifloraceae have presented resistance to soil born pathogens, but their utilization as rootstock from seeds has been limited mainly by differences of thickness between the rootstock and the graft of the commercial cultivars. These limitations could be

  1. Caracterização genética de espécies de Passiflora por marcadores moleculares análogos a genes de resistência Genetic characterization of Passiflora species via resistance genes analog markers

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    Mariana da Silva Paula

    2010-03-01

    Full Text Available O cultivo comercial do maracujá é afetado por diversos problemas fitossanitários, os quais contribuem para quebras de produção e significativa redução da vida útil dos plantios. Em algumas situações, a incidência de doenças pode inviabilizar o cultivo do maracujá. Fontes de resistência a distintas doenças têm sido identificadas em acessos de espécies de Passiflora. Neste trabalho, buscou-se avaliar a diversidade genética de acessos de oito espécies silvestres (P. setacea, P. nitida, P. serratodigitata, P. caerulea, P. gibertii, P. odontophyla, P. edulis e P. coccinea e de um híbrido interespecífico (P. setacea x P. coccinea, utilizando marcadores moleculares análogos a genes de resistência (RGAs. Verificou-se uma grande diversidade no perfil eletroforético de RGAs nos acessos de Passiflora, permitindo a anotação de 96 amplicons polimórficos entre, pelo menos, um par de acessos. Os níveis de dissimilaridade genética (calculados exclusivamente com os marcadores RGAs variaram entre 0,40 e 0,89 nos acessos das espécies de Passiflora avaliadas. A análise de sequência de um subgrupo destes amplicons obtidos com primers RGAs indicou que estas bandas correspondem a regiões genômicas que contêm segmentos (motivos com identidade aos encontrados em genes de resistência previamente caracterizados em outras espécies vegetais. Desta forma, os dados indicam a existência de um repertório variado de marcadores do tipo RGA em Passiflora que podem ser potencialmente úteis em sistemas de caracterização molecular de germoplasma e em programas de melhoramento genético visando à resistência a doenças nesta cultura.The commercial cultivation of passion fruit can be affected by many diseases, which might induce sever fruit yield losses and significant life cycle reduction of the crop. In some situations disease incidence can make the passion fruit production not economically viable. Sources of resistance against several

  2. Mangrove bird community of Paranaguá Bay - Paraná, Brazil

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    Luiz Augusto Macedo Mestre

    2007-01-01

    Full Text Available This study describes the mangrove bird community of Paranaguá Bay in Paraná - South Brazil. Seasonal surveys were conducted during September 1997 to September 1998 at three sites in Paranaguá Bay. Frequencies and abundances of birds were registered in 200m transects and one hour point counts. A total of 81 bird species were observed in the three sampling sites. Most of the bird species in Paranaguá mangroves are fruits, seeds and arthropods consumers, and predators of flying insects. The most frequent and abundant species were Egretta caerulea, Ceryle torquata, Chloroceryle amazona, Pitangus sulphuratus, Turdus amaurochalinus and Parula pitiayumi. The bird community of these three sites is composed mainly by forest bird species. The mangroves of Paranaguá Bay shelter one of the richest avifauna of Brazilian mangroves. Differences between sampling sites could be related to the proximity of the Paranaguá city and human impacts in the areas. Only in the most disturbed site were observed Passer domesticus and large flocks of Coragyps atratus. This study contributed to the knowledge of mangrove communities, and could be an important basis to fluvial-marine conservation plans in Paraná- Brazil.Este estudo teve como objetivos caracterizar a comunidade de aves de manguezais na baía de Paranaguá e comparar descritivamente a comunidade das três áreas amostradas, diferentes em relação à proximidade de centros urbanos. Foram amostradas sazonalmente, entre setembro de 1997 a setembro 1998, três áreas de manguezais a diferentes distâncias da cidade e do porto de Paranaguá. A avifauna foi registrada em transectos de 200m no interior dos manguezais e em observações de 1 hora em pontos fixos. Foram determinadas freqüência, abundancia relativa e densidade de espécies em cada área. Foram observadas 81 espécies de aves nas três áreas de manguezais. As guildas mais significativas foram das espécies consumidoras de frutos, sementes e artr

  3. Biofouling of inlet pipes affects water quality in running seawater aquaria and compromises sponge cell proliferation

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    Brittany E. Alexander

    2015-12-01

    Full Text Available Marine organism are often kept, cultured, and experimented on in running seawater aquaria. However, surprisingly little attention is given to the nutrient composition of the water flowing through these systems, which is generally assumed to equal in situ conditions, but may change due to the presence of biofouling organisms. Significantly lower bacterial abundances and higher inorganic nitrogen species (nitrate, nitrite, and ammonium were measured in aquarium water when biofouling organisms were present within a 7-year old inlet pipe feeding a tropical reef running seawater aquaria system, compared with aquarium water fed by a new, biofouling-free inlet pipe. These water quality changes are indicative of the feeding activity and waste production of the suspension- and filter-feeding communities found in the old pipe, which included sponges, bivalves, barnacles, and ascidians. To illustrate the physiological consequences of these water quality changes on a model organism kept in the aquaria system, we investigated the influence of the presence and absence of the biofouling community on the functioning of the filter-feeding sponge Halisarca caerulea, by determining its choanocyte (filter cell proliferation rates. We found a 34% increase in choanocyte proliferation rates following the replacement of the inlet pipe (i.e., removal of the biofouling community. This indicates that the physiological functioning of the sponge was compromised due to suboptimal food conditions within the aquarium resulting from the presence of the biofouling organisms in the inlet pipe. This study has implications for the husbandry and performance of experiments with marine organisms in running seawater aquaria systems. Inlet pipes should be checked regularly, and replaced if necessary, in order to avoid excessive biofouling and to approach in situ water quality.

  4. The effect of drought on dissolved organic carbon (DOC) release from peatland soil and vegetation sources

    Science.gov (United States)

    Ritson, Jonathan P.; Brazier, Richard E.; Graham, Nigel J. D.; Freeman, Chris; Templeton, Michael R.; Clark, Joanna M.

    2017-06-01

    Drought conditions are expected to increase in frequency and severity as the climate changes, representing a threat to carbon sequestered in peat soils. Downstream water treatment works are also at risk of regulatory compliance failures and higher treatment costs due to the increase in riverine dissolved organic carbon (DOC) often observed after droughts. More frequent droughts may also shift dominant vegetation in peatlands from Sphagnum moss to more drought-tolerant species. This paper examines the impact of drought on the production and treatability of DOC from four vegetation litters (Calluna vulgaris, Juncus effusus, Molinia caerulea and Sphagnum spp.) and a peat soil. We found that mild droughts caused a 39.6 % increase in DOC production from peat and that peat DOC that had been exposed to oxygen was harder to remove by conventional water treatment processes (coagulation/flocculation). Drought had no effect on the amount of DOC production from vegetation litters; however large variation was observed between typical peatland species (Sphagnum and Calluna) and drought-tolerant grassland species (Juncus and Molinia), with the latter producing more DOC per unit weight. This would therefore suggest the increase in riverine DOC often observed post-drought is due entirely to soil microbial processes and DOC solubility rather than litter layer effects. Long-term shifts in species diversity may, therefore, be the most important impact of drought on litter layer DOC flux, whereas pulses related to drought may be observed in peat soils and are likely to become more common in the future. These results provide evidence in support of catchment management which increases the resilience of peat soils to drought, such as ditch blocking to raise water tables.

  5. Songbird abundance and parasitism differ between urban and rural shrublands.

    Science.gov (United States)

    Burhans, Dirk E; Thompson, Frank R

    2006-02-01

    Many studies have examined differences in avian community composition between urban and rural habitats, but few, if any, have looked at nesting success of urban shrubland birds in a replicated fashion while controlling for habitat. We tested factors affecting nest survival, parasitism by the Brown-headed Cowbird (Molothrus ater), and species abundance in shrubland habitat in rural and urban landscapes. We found no support for our hypothesis that nest survival was lower in urban landscapes, but strong support for the hypothesis that survival increased with nest height. We found strong support for our hypothesis that cowbird parasitism was greater in urban than rural landscapes; parasitism in urban sites was at least twice that of rural sites. We found strong support for an urban landscape effect on abundance for several species; Northern Cardinal (Cardinalis cardinalis) and Brown-headed Cowbirds were more abundant in urban landscapes, whereas Field Sparrow (Spizella pusilla) and Blue-winged Warbler (Vermivora pinus) were more abundant in rural sites. There was support for lower abundances of Blue-gray Gnatcatcher (Polioptila caerulea) and Indigo Bunting (Passerina cyanea) with increased housing density. For six other species, edge and trail density or vegetation parameters best explained abundance. Lower abundances and greater parasitism in habitat patches in urban landscapes are evidence that, for some species, these urban landscapes do not fulfill the same role as comparable habitats in rural landscapes. Regional bird conservation planning and local habitat management in urban landscapes may need to consider these effects in efforts to sustain bird populations at regional and local scales.

  6. A comparison of avian communities and habitat characteristics in floodplain forests associated with valley plugs and unchannelized streams

    Science.gov (United States)

    Pierce, A.R.; King, Sammy L.

    2011-01-01

    Channelization of streams associated with floodplain forested wetlands has occurred extensively throughout the world and specifically in the southeastern United States. Channelization of fluvial systems alters the hydrologic and sedimentation processes that sustain these systems. In western Tennessee, channelization and past land-use practices have caused drastic geomorphic and hydrologic changes, resulting in altered habitat conditions that may affect avian communities. The objective of this study was to determine if there were differences in avian communities utilizing floodplain forests along unchannelized streams compared to channelized streams with valley plugs, areas where sediment has completely filled the channel. During point count surveys, 58 bird species were observed at unchannelized sites and 60 species were observed at valley plug sites. Species associated with baldcypress-tupelo (Taxodium-Nyssa) swamps (e.g. Great Egret (Ardea albus) and Black-crowned Night Heron (Nycticorax nycticorax)) and mature hardwood forests with open midstories (e.g. Eastern Wood-Pewee (Contopus virens), Yellow-throated Vireo (Vireo flavifrons), Cerulean Warbler (Dendroica cerulea) and Scarlet Tanager (Piranga olivacea)) were either only found at unchannelized sites or were more abundant at unchannelized sites. Conversely, species associated with open and early successional habitats (e.g. Tree Swallow (Tachycineta bicolor), Northern Mockingbird (Mimus polyglottos) and Blue Grosbeak (Passerina caerulea)) were either only found at valley plug sites or were more abundant at valley plug sites. Results of habitat modelling suggest that the habitat characteristics of floodplain forests at unchannelized sites are more suitable for Neotropical migrant bird species of conservation concern in the region than at valley plug sites. This study, in combination with previous research, demonstrates the ecological impacts of valley plugs span across abiotic and biotic processes and tropic

  7. Cloning and characterization of chromosomal markers in alfalfa (Medicago sativa L.).

    Science.gov (United States)

    Yu, Feng; Lei, Yunting; Li, Yuan; Dou, Quanwen; Wang, Haiqing; Chen, Zhiguo

    2013-07-01

    Eleven tandemly repetitive sequences were identified from a Cot-1 library by FISH and sequence analysis of alfalfa (Medicago sativa). Five repetitive sequences (MsCR-1, MsCR-2, MsCR-3, MsCR-4, and MsCR-5) were centromeric or pericentromeric, of which three were satellite DNAs and two were minisatellite DNAs. Monomers of 144, 148, and 168 bp were identified in MsCR-1, MsCR-2, and MsCR-3, respectively, while 15 and 39 bp monomers were identified in MsCR-4 and MsCR-5, respectively. Three repetitive sequences were characterized as subtelomeric; one repetitive sequence, MsTR-1, had a 184 bp monomer, and two repetitive sequences had fragments of 204 and 327 bp. Sequence analysis revealed homology (70-80 %) between MsTR-1 and a highly repeated sequence (C300) isolated from M. ssp. caerulea. Three identified repetitive sequences produced hybridization signals at multiple sites in a few of the chromosomes; one repetitive sequence was identified as the E180 satellite DNA previously isolated from M. sativa, while the other 163 and 227 bp fragments had distinct sequences. Physical mapping of the repetitive sequences with double-target FISH revealed different patterns. Thus, nine novel tandemly repetitive sequences that can be adopted as distinct chromosome markers in alfalfa were identified in this study. Furthermore, the chromosome distribution of each sequence was well described. Though significant chromosome variations were detected within and between cultivars, a molecular karyotype of alfalfa was suggested with the chromosome markers we identified. Therefore, these novel chromosome markers will still be a powerful tool for genome composition analysis, phylogenetic studies, and breeding applications.

  8. Spatial and temporal variations of dissolved organic carbon and inorganic carbon concentrations and δ13C in a peatland-stream continuum: implications of peatland invasion by vascular plants

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    S. Binet

    2012-03-01

    Full Text Available Dissolved fluxes of C which are an important component of the global C budget of peatlands may be affected by global change in different ways. The evolution of peatland vegetation is an issue caused by the indirect effect of global change that still needs to be addressed. The aim of this study was to study the temporal and spatial variations in the quantity and the characteristics of dissolved C within in a peatland stream continuum, the peatland being invaded by Molinia caerulea and Betula spp. The study highlighted the following key points: (i Vegetation change tends to increase the DOC concentration of peat surface water. (ii DOC exports were in the range of those found in the literature, and it was clearly established that peatland DOC can reach second order streams. (iii Peat water was supersaturated in CO2 especially in summer during the peak of microbial activity. (iv the CO2 critical layer at the surface of the soil may promote CO2 excess build-up in the peat water. This critical layer may promote CO2 export out of the peatland. The effect of vegetation change on the DOC content of peat water deserves further attention as it may have a deep impact on downstream river water quality. In particular, it is necessary to clarify whether the concentration of C dynamics is affected by the invading species. More attention should be paid to hydrological processes (e.g. pumping capacity of the different plants and the microbial activity in the rhizosphere of the invading plants. Also, the relation between the CO2 critical zone at the surface of the soil and the CO2 concentration in water should be studied in detail.

  9. Towards a transferable and cost-effective plant AFLP protocol.

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    Marguerite Blignaut

    Full Text Available Amplified fragment length polymorphism (AFLP is a powerful fingerprinting technique that is widely applied in ecological and population genetic studies. However, its routine use has been limited by high costs associated with the optimization of fluorescently labelled markers, especially for individual study systems. Here we develop a low-cost AFLP protocol that can be easily transferred between distantly related plant taxa. Three fluorescently labelled EcoRI-primers with anchors that target interspecifically conserved genomic regions were used in combination with a single non-labelled primer in our AFLP protocol. The protocol was used to genotype one gymnosperm, two monocot and three eudicot plant genera representing four invasive and four native angiosperm species (Pinus pinaster (Pinaceae, Pennisetum setaceum and Poa annua (Poaceae, Lantana camara (Verbenaceae, Bassia diffusa (Chenopodiaceae, Salvia lanceolata, Salvia africana-lutea, and Salvia africana-caerulea (Lamiaceae. Highly polymorphic and reproducible genotypic fingerprints (between 37-144 polymorphic loci per species tested were obtained for all taxa tested. Our single protocol was easily transferred between distantly related taxa. Measures of expected heterozygosity ranged from 0.139 to 0.196 for P. annua and from 0.168 to 0.272 for L. camara which compared well with previously published reports. In addition to ease of transferability of a single AFLP protocol, our protocol reduces costs associated with commercial kits by almost half. The use of highly conserved but abundant anchor sequences reduces the need for laborious screening for usable primers that result in polymorphic fingerprints, and appears to be the main reason for ease of transferability of our protocol between distantly related taxa.

  10. FLUTUAÇÃO POPULACIONAL DE Dione juno juno (Cramer, 1779 (Lepidoptera: Nymphalidae EM MARACUJAZEIROS (Passiflora spp., MÉTODOS DE AMOSTRAGEM E RESISTÊNCIA DE GENÓTIPOS

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    Boiça Júnior Arlindo Leal

    1999-01-01

    Full Text Available A pesquisa foi desenvolvida por um período de três anos (1991/94, em condições de campo, em Jaboticabal, SP, objetivando-se verificar a época do ano de maior ocorrência de Dione juno juno, avaliar métodos de amostragem e a resistência de genótipos de maracujazeiro (Passiflora spp. ao seu ataque. Utilizaram-se doze genótipos entre espécies e híbridos. Os levantamentos foram realizados quinzenalmente, anotando-se o número de lagartas, o número total de folhas e o número de folhas atacadas por 0,25 m2 , e também em 1,5 m linear de espaldeira. Os resultados mostraram que a ocorrência de D. juno juno foi maior no inverno, com pico populacional em julho, seguindo-se da primavera e o verão, com pico em dezembro. As amostragens do número de folhas atacadas por D. juno juno/0,25 m2 e porcentagem de folhas atacadas pelas lagartas/0,25 m2 foram mais adequadas para a avaliação da infestação de genótipos de maracujazeiro pela praga; os genótipos P. alata, P. setacea, P. coccinea, P. nitida, P. alata2 x P. macrocarpa não foram atacados pela praga e o P. edulis x P. setacea foi muito pouco atacado, enquanto P. cincinnata, P. edulis, P. edulis x P. alata, P. edulis x P. giberti e P. caerulea foram os mais infestados.

  11. Anthocyanins extracted from Chinese blueberry (Vaccinium uliginosum L.) and its anticancer effects on DLD-1 and COLO205 cells

    Institute of Scientific and Technical Information of China (English)

    ZU Xiao-yan; ZHANG Zhen-ya; ZHANG Xiao-wen; YOSHIOKA Masahiro; YANG Ying-nan; LI Ji

    2010-01-01

    Background Vaccinium uliginosum L. is a type of blueberry found in the Chinese Changbai Mountains. We extracted Vaccinium uliginosurn Anthocyanins (Av.uli) to investigate its bioactivity on suppressing cancer cells.Methods Av.uli was extracted under different conditions of temperature (10℃-35℃), pH 1.0-3.0, and diatomaceous earth (1.0 g-3.0 g), followed by a HPLC analysis for the determination of the ingredients. Its anticancer bioactivities on human colon and colorectal cancer cells (DLD-1 and COLO205) were compared with those on Lonicera caerulea Anthocyanins (AL.cae) and Vaccinium myrtillus Anthocyanins (Av.myr), using cell viability assays, DNA electrophoresis and nuclear morphology assays.Results The optimum process of Av.uliextraction involved conditions of temperature 20℃, pH 2.0, and diatomaceous earth 1.0 g/50 g of fruit weight. Av.uli contained 5 main components: delphinidin (40.70±1.72)%, cyanidin (3.40±0.68)%,petunidin (17.70±0.54)%, peonidin (2.90±0.63)% and malvidin (35.50±1.11)%. The malvidin percentage was significantly higher (P <0.05) than it in Av.myr. Av.uli complied with a dose-dependent repression of cancer cell proliferation with an IC50 (50% inhibitory concentration) value of 50 μg/ml, and showed greater anticancer efficiency than AL. cae and Av. myr under the same cell treatment conditions. These observations were further supported by the results of nuclear assays.Conclusions The extraction protocol and conditions we used were effective for anthocyanin extraction. Av.uli could be a feasible practical research tool and a promising therapeutic source to suppress human colon or colorectal cancers.

  12. Marine molluscs in environmental monitoring. I. Cellular and molecular responses

    Science.gov (United States)

    Bresler, Vladimir; Abelson, Avigdor; Fishelson, Lev; Feldstein, Tamar; Rosenfeld, Michael; Mokady, Ofer

    2003-10-01

    The study reported here is part of an ongoing effort to establish sensitive and reliable biomonitoring markers for probing the coastal marine environment. Here, we report comparative measurements of a range of histological, cellular and sub-cellular parameters in molluscs sampled in polluted and reference sites along the Mediterranean coast of Israel and in the northern tip of the Gulf of Aqaba, Red Sea. Available species enabled an examination of conditions in two environmental 'compartments': benthic (Donax trunculus) and intertidal (Brachidontes pharaonis, Patella caerulea) in the Mediterranean; pelagic (Pteria aegyptia) and intertidal (Cellana rota) in the Red Sea. The methodology used provides rapid results by combining specialized fluorescent probes and contact microscopy, by which all parameters are measured in unprocessed animal tissue. The research focused on three interconnected levels. First, antixenobiotic defence mechanisms aimed at keeping hazardous agents outside the cell. Paracellular permeability was 70-100% higher in polluted sites, and membrane pumps (MXRtr and SATOA) activity was up to 65% higher in polluted compared to reference sites. Second, intracellular defence mechanisms that act to minimize potential damage by agents having penetrated the first line of defence. Metallothionein expression and EROD activity were 160-520% higher in polluted sites, and lysosomal functional activity (as measured by neutral red accumulation) was 25-50% lower. Third, damage caused by agents not sufficiently eliminated by the above mechanisms (e.g. single-stranded DNA breaks, chromosome damage and other pathological alterations). At this level, the most striking differences were observed in the rate of micronuclei formation and DNA breaks (up to 150% and 400% higher in polluted sites, respectively). The different mollusc species used feature very similar trends between polluted and reference sites in all measured parameters. Concentrating on relatively basic

  13. Using combined morphological, allometric and molecular approaches to identify species of the genus Raillietiella (Pentastomida.

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    Crystal Kelehear

    Full Text Available Taxonomic studies of parasites can be severely compromised if the host species affects parasite morphology; an uncritical analysis might recognize multiple taxa simply because of phenotypically plastic responses of parasite morphology to host physiology. Pentastomids of the genus Raillietiella are endoparasitic crustaceans primarily infecting the respiratory system of carnivorous reptiles, but also recorded from bufonid anurans. The delineation of pentastomids at the generic level is clear, but the taxonomic status of many species is not. We collected raillietiellids from lungs of the invasive cane toad (Rhinella marina, the invasive Asian house gecko (Hemidactylus frenatus, and a native tree frog (Litoria caerulea in tropical Australia, and employed a combination of genetic analyses, and traditional and novel morphological methods to clarify their identity. Conventional analyses of parasite morphology (which focus on raw values of morphological traits revealed two discrete clusters in terms of pentastome hook size, implying two different species of pentastomes: one from toads and a tree frog (Raillietiella indica and another from lizards (Raillietiella frenatus. However, these clusters disappeared in allometric analyses that took pentastome body size into account, suggesting that only a single pentastome taxon may be involved. Our molecular data revealed no genetic differences between parasites in toads versus lizards, confirming that there was only one species: R. frenatus. This pentastome (previously known only from lizards clearly is also capable of maturing in anurans. Our analyses show that the morphological features used in pentastomid taxonomy change as the parasite transitions through developmental stages in the definitive host. To facilitate valid descriptions of new species of pentastomes, future taxonomic work should include both morphological measurements (incorporating quantitative measures of body size and hook bluntness and

  14. Towards a transferable and cost-effective plant AFLP protocol.

    Science.gov (United States)

    Blignaut, Marguerite; Ellis, Allan G; Le Roux, Johannes J

    2013-01-01

    Amplified fragment length polymorphism (AFLP) is a powerful fingerprinting technique that is widely applied in ecological and population genetic studies. However, its routine use has been limited by high costs associated with the optimization of fluorescently labelled markers, especially for individual study systems. Here we develop a low-cost AFLP protocol that can be easily transferred between distantly related plant taxa. Three fluorescently labelled EcoRI-primers with anchors that target interspecifically conserved genomic regions were used in combination with a single non-labelled primer in our AFLP protocol. The protocol was used to genotype one gymnosperm, two monocot and three eudicot plant genera representing four invasive and four native angiosperm species (Pinus pinaster (Pinaceae), Pennisetum setaceum and Poa annua (Poaceae), Lantana camara (Verbenaceae), Bassia diffusa (Chenopodiaceae), Salvia lanceolata, Salvia africana-lutea, and Salvia africana-caerulea (Lamiaceae)). Highly polymorphic and reproducible genotypic fingerprints (between 37-144 polymorphic loci per species tested) were obtained for all taxa tested. Our single protocol was easily transferred between distantly related taxa. Measures of expected heterozygosity ranged from 0.139 to 0.196 for P. annua and from 0.168 to 0.272 for L. camara which compared well with previously published reports. In addition to ease of transferability of a single AFLP protocol, our protocol reduces costs associated with commercial kits by almost half. The use of highly conserved but abundant anchor sequences reduces the need for laborious screening for usable primers that result in polymorphic fingerprints, and appears to be the main reason for ease of transferability of our protocol between distantly related taxa.

  15. The Impact of Different Habitat Conditions on the Variability of Wild Populations of a Medicinal Plant Betonica officinalis L.

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    Kinga Kostrakiewicz-Gierałt

    2015-06-01

    Full Text Available Plants are important source of beneficial bioactive compounds which may find various applications as functional ingredients, such as components of food supplements, cosmetics, and pharmaceuticals. One such medicinal plant is Betonica officinalis, populations of which were investigated in 2012‒13. The studies were conducted in patches of Molinietum caeruleae dominated by: small meadow taxa (patch I; the shrub willow Salix repens ssp. rosmarinifolia (patch II; large tussock grasses Deschampsia caespitosa and Molinia caerulaea (patch III; tall-growing macroforbs Filipendula ulmaria and Solidago canadensis (patch IV. Over successive patches, the average height of plant cover increased, as did soil moisture, while light availability at ground level decreased. Much greater abundance and density of the Betonica officinalis population were found in patches I, III and IV, while lower values for these parameters were noted in patch II. Individuals in pre-reproductive stages were absent during whole study period in all study plots, vegetative ramet clusters were observed in plots situated in patches I and III in the first year of observations, while only generative ramet clusters occurred in plots set in patches II and IV. The number of rosettes per ramet cluster, number and dimensions of rosette leaves, height of flowering stems, number of cauline leaves, length of inflorescences, as well as number and length of flowers increased gradually over successive patches, whereas the number of generative stems per ramet cluster did not differ remarkably among populations. On the basis of the performed studies it might be concluded that the condition of populations deteriorated from patches overgrown by large-tussock grasses and characterized by considerable share of native and alien tall-growing macroforbs, via patch dominated by small meadow taxa, to patch prevailed by shrub willows.

  16. In Vitro and In Vivo Characterization of the Alkaloid Nuciferine.

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    Martilias S Farrell

    Full Text Available The sacred lotus (Nelumbo nucifera contains many phytochemicals and has a history of human use. To determine which compounds may be responsible for reported psychotropic effects, we used in silico predictions of the identified phytochemicals. Nuciferine, an alkaloid component of Nelumbo nucifera and Nymphaea caerulea, had a predicted molecular profile similar to antipsychotic compounds. Our study characterizes nuciferine using in vitro and in vivo pharmacological assays.Nuciferine was first characterized in silico using the similarity ensemble approach, and was followed by further characterization and validation using the Psychoactive Drug Screening Program of the National Institute of Mental Health. Nuciferine was then tested in vivo in the head-twitch response, pre-pulse inhibition, hyperlocomotor activity, and drug discrimination paradigms.Nuciferine shares a receptor profile similar to aripiprazole-like antipsychotic drugs. Nuciferine was an antagonist at 5-HT2A, 5-HT2C, and 5-HT2B, an inverse agonist at 5-HT7, a partial agonist at D2, D5 and 5-HT6, an agonist at 5-HT1A and D4 receptors, and inhibited the dopamine transporter. In rodent models relevant to antipsychotic drug action, nuciferine blocked head-twitch responses and discriminative stimulus effects of a 5-HT2A agonist, substituted for clozapine discriminative stimulus, enhanced amphetamine induced locomotor activity, inhibited phencyclidine (PCP-induced locomotor activity, and rescued PCP-induced disruption of prepulse inhibition without induction of catalepsy.The molecular profile of nuciferine was similar but not identical to that shared with several approved antipsychotic drugs suggesting that nuciferine has atypical antipsychotic-like actions.

  17. Latitudinal variation in the recruitment dynamics of small pelagic fishes in the western North Pacific

    Science.gov (United States)

    Watanabe, Yoshiro

    2007-07-01

    The subarctic Oyashio Current flows south-westward and the subtropical Kuroshio Current flows north-eastward in the western North Pacific, converging in the waters off northern Japan to form the Kuroshio-Oyashio transition region. Some small pelagic fishes inhabit the subarctic or subtropical waters, and others seasonally migrate north and south across the major ocean fronts. Environmental conditions in the subarctic and transition waters are variable, whereas in the subtropical Kuroshio waters conditions are relatively stable. Latitudinally different environmental conditions may affect vital parameters and recruitment variability of small pelagic fishes inhabiting the various waters. Pacific saury Cololabis saira migrate seasonally from the Kuroshio to Oyashio waters and spawn in the transition waters in autumn and spring and in the Kuroshio waters in winter. During 1990-1999, the coefficients of variation (CVs) of daily growth rates (G) and instantaneous mortality coefficients (M) were large for larvae and juveniles spawned in the northern transition waters, but relatively small for those from the southern Kuroshio waters. The Pacific stock of chub mackerel Scomber japonicus spawns in the Kuroshio waters in spring and early summer and migrates to the subarctic Oyashio waters in summer for feeding, whereas the Tsushima Warm Current stock spawns in the East China Sea in spring and fish remain in the subtropical warm waters throughout their lifetime. The Pacific stock had CVs > 100% for the fish aged 0-5 during 1970-2002. In contrast, the Tsushima Warm Current stock had CVs of 34-40% during 1973-2002. Pacific herring Clupea pallasii, which inhabits subarctic waters, had CVs of 118-178% for the fish aged 3-8 y during 1910-1954. Japanese sardine Sardinops melanostictus, which spawn in the subtropical Kuroshio waters and migrate to the subarctic Oyashio waters in summer for feeding, had CVs > 120% for the fish aged 0-4 during 1976-2003. Contrasting with these subarctic

  18. 九种鲱科鱼类线粒体DNA细胞色素b基因相对速率测试及分歧时间估计%Phylogenetic analysis and relative-rate test of nine Clupeidae fishes ( Osteichthyes: Clupeiformes) inferred from cytochrome b gene sequence of mitochondrial DNA

    Institute of Scientific and Technical Information of China (English)

    程起群; 卢大儒

    2006-01-01

    对鲱科9种鱼类的线粒体细胞色素b(cytb)基因序列进行综合分析.结果表明:(1)用NeighbourJoining(NJ)法构建的分子系统树显示盖纹沙丁鱼属的3种鱼类形成一个单系类群,鲱属2种鱼类形成一个单系类群,它们的bootstrap支持率均为100%.金色小沙丁鱼和短体小沙丁鱼形成一个单系类群,在NJ树中的支持率达到或超过50%.欧洲黍鲱与太平洋鲱和大西洋鲱是单系起源,其bootstrap支持率高达100%.系统发育结果还支持沙丁鱼属鱼类与盖纹沙丁鱼属鱼类是单系类群,支持率分别为87%和95%.但单系类群Ⅰ(包括大西洋鲱、太平洋鲱、欧洲黍鲱)和单系类群Ⅱ(包括欧洲沙丁鱼、加州沙丁鱼、南美拟沙丁鱼、斑点盖纹沙丁鱼)之间的系统发育关系尚不明确,因为它们之间的支持率很低.(2)dN/dS的比值显著的小于1(Ztest),提示由于功能限制,cytb基因受到强烈的负选择作用.(3)基于Tajima的1D和2D相对速率测试表明,分子钟假说在鲱科鱼类中是成立的;鲱科鱼类的分歧时间是0.12至13.45百万年间.%Phylogenetic analysis and relative- rate test of 9 Clupeidae fishes were performed using the cytochrome b(cytb) gene sequence data. Based on Kimura-2-Parameter(K2P) distance, bootstrapped NJ tree ( 1000 replicates) was generated from these 9 cytb gene sequences of Clupeidae fishes. Three species of genus Sardinops are monophyletic group, 2 species of genus Clupea are monophyletic group, and their bootstrap values are both 100%. Sardinella aurita and Sardinella maderensis are monophyletic group, their bootstrap value reached or exceed 50%. Sprattus sprattus which is a species of genus Sprattus, has a monophyletic origin with genus Clupea, their bootstrap value was 100%. The number of synonymous nucleotide substitution per synonymous site (dS) and the number of nonsynonymous nucleotide substitution per nonsynonymous site (dN) of cytb gene among Clupeidae fishes were calculated

  19. Sticking like sticky tape: tree frogs use friction forces to enhance attachment on overhanging surfaces.

    Science.gov (United States)

    Endlein, Thomas; Ji, Aihong; Samuel, Diana; Yao, Ning; Wang, Zhongyuan; Barnes, W Jon P; Federle, Walter; Kappl, Michael; Dai, Zhendong

    2013-03-06

    To live and clamber about in an arboreal habitat, tree frogs have evolved adhesive pads on their toes. In addition, they often have long and slender legs to facilitate not only long jumps, but also to bridge gaps between leaves when climbing. Both adhesive pads and long limbs are used in conjunction, as we will show in this study. Previous research has shown that tree frogs change from a crouched posture (where the limbs are close to the body) to a sprawled posture with extended limbs when clinging on to steeper inclines such as vertical or overhanging slopes. We investigated this change in posture in White's tree frogs (Litoria caerulea) by challenging the frogs to cling onto a tiltable platform. The platform consisted of an array of 24 three-dimensional force transducers, which allowed us to measure the ground reaction forces of the frogs during a tilt. Starting from a crouched resting position, the normal forces on the forelimbs changed sign and became increasingly negative with increasing slope angle of the platform. At about 106° ± 12°, tilt of the platform the frogs reacted by extending one or two of their limbs outwards. At a steeper angle (131° ± 11°), the frogs spread out all their limbs sideways, with the hindlimbs stretched out to their maximum reach. Although the extension was strongest in the lateral direction, limbs were significantly extended in the fore-aft direction as well. With the extension of the limbs, the lateral forces increased relative to the normal forces. The large contribution of the in-plane forces helped to keep the angle between the force vector and the platform small. The Kendall theory for the peeling of adhesive tape predicts that smaller peel angles lead to higher attachment forces. We compare our data with the predictions of the Kendall model and discuss possible implications of the sliding of the pads on the surface. The forces were indeed much larger for smaller angles and thus can be explained by peeling theory.

  20. Bird-window collisions in the summer breeding season

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    Stephen B. Hager

    2014-06-01

    Full Text Available Birds that reside in urban settings face numerous human-related threats to survival, including mortality from bird-window collisions (BWCs. Our current understanding of this issue has largely been driven by data collected during spring and fall migration, and patterns of collision mortality during the summer breeding season remain relatively unexplored. We assessed BWCs during four breeding seasons (2009–2012 at a site in northwestern Illinois, USA, by comparing the abundance, richness, migratory class, and age of the species living around buildings to species mortally wounded by window collisions. We also systematically assessed the daily timing of BWCs throughout the breeding season. We documented BWCs in 4 of 25 (16% species and 7 of 21 (33% species in 2009 and 2010, respectively. The relationship between BWCs and abundance depended on age. For adults, BWCs were highest in the least abundant species, e.g., Red-eyed Vireo (Vireo olivaceus, and lowest in species with high abundance values, e.g., Chipping Sparrow (Spizella passerina. For juveniles, mortality was greatest for the most abundant species, and the American Robin (Turdus migratorius accounted for 62% of all juvenile carcasses. Early in the breeding season, collision mortality was restricted to adults of Long-distance Migrants, whereas juveniles of all three migratory guilds (Long-distance and Short-distance Migrants and Permanent Residents died at windows from late June through early August. Daily mortality for all species was highest between sunrise–1600 h and lowest from 1600 h–sunrise the next day. Generally, the species observed as carcasses matched birds considered a ‘high risk’ for BWCs, e.g., Ruby-throated Hummingbird (Archilochus colubris, and those considered ‘low risk’ were not observed as carcasses, e.g., Blue-gray Gnatcatcher (Polioptila caerulea. Our results suggest that the number of BWCs during the breeding season does not necessarily increase with

  1. Bird-window collisions in the summer breeding season.

    Science.gov (United States)

    Hager, Stephen B; Craig, Matthew E

    2014-01-01

    Birds that reside in urban settings face numerous human-related threats to survival, including mortality from bird-window collisions (BWCs). Our current understanding of this issue has largely been driven by data collected during spring and fall migration, and patterns of collision mortality during the summer breeding season remain relatively unexplored. We assessed BWCs during four breeding seasons (2009-2012) at a site in northwestern Illinois, USA, by comparing the abundance, richness, migratory class, and age of the species living around buildings to species mortally wounded by window collisions. We also systematically assessed the daily timing of BWCs throughout the breeding season. We documented BWCs in 4 of 25 (16%) species and 7 of 21 (33%) species in 2009 and 2010, respectively. The relationship between BWCs and abundance depended on age. For adults, BWCs were highest in the least abundant species, e.g., Red-eyed Vireo (Vireo olivaceus), and lowest in species with high abundance values, e.g., Chipping Sparrow (Spizella passerina). For juveniles, mortality was greatest for the most abundant species, and the American Robin (Turdus migratorius) accounted for 62% of all juvenile carcasses. Early in the breeding season, collision mortality was restricted to adults of Long-distance Migrants, whereas juveniles of all three migratory guilds (Long-distance and Short-distance Migrants and Permanent Residents) died at windows from late June through early August. Daily mortality for all species was highest between sunrise-1600 h and lowest from 1600 h-sunrise the next day. Generally, the species observed as carcasses matched birds considered a 'high risk' for BWCs, e.g., Ruby-throated Hummingbird (Archilochus colubris), and those considered 'low risk' were not observed as carcasses, e.g., Blue-gray Gnatcatcher (Polioptila caerulea). Our results suggest that the number of BWCs during the breeding season does not necessarily increase with abundance, but rather appears

  2. Museum material reveals a frog parasite emergence after the invasion of the cane toad in Australia

    Directory of Open Access Journals (Sweden)

    Phalen David N

    2010-06-01

    Full Text Available Abstract Background A parasite morphologically indistinguishable from Myxidium immersum (Myxozoa: Myxosporea found in gallbladders of the invasive cane toad (Bufo marinus was identified in Australian frogs. Because no written record exists for such a parasite in Australian endemic frogs in 19th and early 20th century, it was assumed that the cane toad introduced this parasite. While we cannot go back in time ourselves, we investigated whether material at the museum of natural history could be used to retrieve parasites, and whether they were infected at the time of their collection (specifically prior to and after the cane toad translocation to Australia in 1935. Results Using the herpetological collection at the Australian Museum we showed that no myxospores were found in any animals (n = 115 prior to the cane toad invasion (1879-1935. The green and golden bell frog (Litoria aurea, the Peron's tree frog (Litoria peronii, the green tree frog (Litoria caerulea and the striped marsh frog (Limnodynastes peronii were all negative for the presence of the parasite using microscopy of the gallbladder content and its histology. These results were sufficient to conclude that the population was free from this disease (at the expected minimum prevalence of 5% at 99.7% confidence level using the 115 voucher specimens in the Australian Museum. Similarly, museum specimens (n = 29 of the green and golden bell frog from New Caledonia, where it was introduced in 19th century, did not show the presence of myxospores. The earliest specimen positive for myxospores in a gallbladder was a green tree frog from 1966. Myxospores were found in eight (7.1%, n = 112 frogs in the post cane toad introduction period. Conclusion Australian wildlife is increasingly under threat, and amphibian decline is one of the most dramatic examples. The museum material proved essential to directly support the evidence of parasite emergence in Australian native frogs. This parasite can be

  3. Exploring climatic controls on blanket bog litter decomposition across an altitudinal gradient

    Science.gov (United States)

    Bell, Michael; Ritson, Jonathan P.; Clark, Joanna M.; Verhoef, Anne; Brazier, Richard E.

    2016-04-01

    The hydrological and ecological functioning of blanket bogs is strongly coupled, involving multiple ecohydrological feedbacks which can affect carbon cycling. Cool and wet conditions inhibit decomposition, and favour the growth of Sphagnum mosses which produce highly recalcitrant litter. A small but persistent imbalance between production and decomposition has led to blanket bogs in the UK accumulating large amounts of carbon. Additionally, healthy bogs provide a suite of other ecosystems services including water regulation and drinking water provision. However, there is concern that climate change could increase rates of litter decomposition and disrupt this carbon sink. Furthermore, it has been argued that the response of these ecosystems in the warmer south west and west of the UK may provide an early analogue for later changes in the more extensive northern peatlands. In order to investigate the effects of climate change on blanket bog litter decomposition, we set-up a litter bag experiment across an altitudinal gradient spanning 200 m of elevation (including a transition from moorland to healthy blanket bog) on Dartmoor, an area of hitherto unstudied, climatically marginal blanket bog in the south west of the UK. At seven sites, water table depth and soil and surface temperature were recorded continuously. Litter bags filled with the litter of three vegetation species dominant on Dartmoor were incubated just below the bog surface and retrieved over a period of 12 months. We found significant differences in the rate of decomposition between species. At all sites, decomposition progressed in the order Calluna vulgaris (dwarf shrub) > Molinia caerulea (graminoid) > Sphagnum (bryophyte). However, while soil temperature did decrease along the altitudinal gradient, being warmer in the lower altitudes, a hypothesised accompanying decrease in decomposition rates did not occur. This could be explained by greater N deposition at the higher elevation sites (estimated

  4. Correlations of cranial morphology, ecology, and evolution in Australian suctorial tadpoles of the genera Litoria and Nyctimystes (Amphibia: Anura: Hylidae: Pelodryadinae).

    Science.gov (United States)

    Haas, A; Richards, S J

    1998-11-01

    Suctorial anuran larvae are highly specialized for living in fast-flowing waters, using their oral disks as adhesive organs to attach to the substrate. The cranial musculoskeletal structure of suctorial larvae of Litoria nannotis, L. rheocola, and Nyctimystes dayi (Hylidae: Pelodryadinae) were compared with congenerics with pond-type larvae (L. caerulea, L. genimaculata, L. xanthomera). Data from two other neobatrachian species with suctorial larvae (Boophis sp., Hyla armata) as well as published descriptions were taken into account. Suctorial tadpoles evolved several times independently in the Neobatrachia and share various features, irrespective of their phylogenetic position. These include the following. Cornua trabeculae are expanded anteriorly and sometimes fused. The lower jaws are robust. The greatest width of the skull is at the level of the jaw articulation. The upper jaw cartilages are partially or fully fused. The palatoquadrate is robust and connected to the skull by a wide commissura quadratocranialis anterior, processus oticus, processus basalis (in some species), and processus ascendens (vestigial or absent in some species). A processus ventralis quadrati provides an extended area of origin for the m. orbitohyoideus. The m. rectus abdominis inserts far anterior and acts on the cranium. The insertion of the epaxial musculature is shifted anteriorly to the anterior parts of the otic capsule. The mm. diaphragmatobranchialis and rectus cervicis cross at their origins. The origin of the m. levator mandibulae anterior has shifted posteriorly. The branchial basket is relatively small and the ceratohyal area is large. Multiple convergent evolution of these features suggests that they may be causally associated with the suctorial mode of larval life. Aside from these characters, however, the suctorial and pond-type neobatrachian species are remarkably similar in their jaw musculature and hyobranchial musculoskeletal composition. In some features, Ascaphus

  5. ESTUDIOS CROMOSOMICOS EN ESPECIES DE TURNERA (TURNERACEAE

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    Viviana G. Solis Neffa

    2010-11-01

    Full Text Available En el presente trabajo se informa por primera vez el número de cromosomas de 5 especies y 1 variedad de Turnera. Se confirman previos reported en 5 taxones . Los cariotipos de 16 taxones de Turnera se describen por primera vez. Los resultados del análisis de los cromosomas son los siguientes: T.weddelliana, 2n = 2x = 14 = 12m 2sm; T.pumilea, 2n = 2x = 14 = 10 m 4sm; T.hassleriana, 2n = 2x = 14 = 12m 2sm; T.chamaedryfolia, 2n = 2x = 26 = 16m + 8 sm + 2 st; T.caerulea, 2n = 2x = 1O = 8m + 2sm; T.concinna, 2n = 2x = 10 = 8 m + 2sm; T.krapovickasii, 2n = 2x = 10 = 8m + 2sm; T.grandiflora, 2n = 8x = 40 = 32m + 8sm; T. subulata, 2n = 2x = 10 = 8m + 2sm; T.grandidentata, 2n = 4x = 20 = 18m + 2sm; T.angustifolia, 2n = 6x = 30 = 26 m + 4sm; T.orientalis, 2n = 6x = 30 = 26 m +s 4 sm; T.ulmifolia, 2n = 6x = 30 = 24 m + 6sm; T.velutina, 2n = 6x = 30 = 28m + 2sm; T.aurelioi , 2n = 8x = 40 = 36 m + 4 sm y T.cuneiformis, 2n = 8x = 40 = 36 m + 4sm. Los cromosomas son de pequeño tamaño. Las especies de la serie Salicifoliae y Leiocarpae (x = 7 tienen cromosomas que son más pequeños que los de la serie Canaligerae (x = 5 y Papilliferae (x = 13. Todas las especies estudiadas tienen cariotipos simétricos. El diagrama de dispersión muestra que las especies con diferentes números básicos son perfectamente separadas. T.chamaedryfolia (x = 13 de la serie Papilliferae es el más asimétrico, mientras que las especies de la serie Canaligerae son los más simétricos. Las especies con x = 7 ocupan un lugar central en el diagrama.

  6. Deposition of shallow water sponges in response to seasonal changes

    Science.gov (United States)

    Ávila, Enrique; Carballo, José Luis; Vega, Cristina; Camacho, Leonardo; Barrón-Álvarez, José J.; Padilla-Verdín, Claudia; Yáñez-Chávez, Benjamín

    2011-08-01

    Removal of organisms from the subtidal zone plays an important role in shaping benthic communities in shallow bays. The main objective of this research was to quantify the biomass of sponges washed up on the beach at Mazatlan Bay (Mexico, eastern Pacific Ocean), and to determine its relationship with local weather and oceanographic conditions. To know whether this process has a significant effect on the sponge populations, changes in abundance of the species washed into the beach were also quantified in adjoining sublittoral areas. The sponges that were washed ashore were mainly branching ( Mycale ramulosa), massive ( Haliclona caerulea) and cushion-shaped ( Callyspongia californica) species. Species with high content of spongin in their structure (e.g. Hyattella intestinalis) were common in the subtidal zone but were rarely found on the beach. Encrusting species were never found. Four-year data of sponge deposition on the beach showed that the total annual sponge biomass ranged from 30 to 60 g DW m - 2 with an inter-annual range from 0.1 to 17.3 g DW m - 2 . The highest deposition of sponges was during the spring-summer transition (from April to July), which was associated with a change in wind direction (from NW to WSW). This change also matched with low tides and a high resuspension of bottom sediments, suggesting a high-energy environment during this transition. The increase in sponge biomass washed on the beach coincided with a decrease in the density of adjacent sponge populations. A multiple regression analysis showed that 68.48% of the variation on sponge biomass on the beach could be statistically explained using a combination of environmental factors (wind speed, sediment resuspension and tides). Thus, seasonal changes in wind direction combined with the effect of low tides and sediment resuspension could serve to predict fragmentation/detachment events of benthic organisms in shallow sublittoral areas worldwide. This study also provides insights to

  7. Prevalence of single nucleotide polymorphism among 27 diverse alfalfa genotypes as assessed by transcriptome sequencing

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    Li Xuehui

    2012-10-01

    Full Text Available Abstract Background Alfalfa, a perennial, outcrossing species, is a widely planted forage legume producing highly nutritious biomass. Currently, improvement of cultivated alfalfa mainly relies on recurrent phenotypic selection. Marker assisted breeding strategies can enhance alfalfa improvement efforts, particularly if many genome-wide markers are available. Transcriptome sequencing enables efficient high-throughput discovery of single nucleotide polymorphism (SNP markers for a complex polyploid species. Result The transcriptomes of 27 alfalfa genotypes, including elite breeding genotypes, parents of mapping populations, and unimproved wild genotypes, were sequenced using an Illumina Genome Analyzer IIx. De novo assembly of quality-filtered 72-bp reads generated 25,183 contigs with a total length of 26.8 Mbp and an average length of 1,065 bp, with an average read depth of 55.9-fold for each genotype. Overall, 21,954 (87.2% of the 25,183 contigs represented 14,878 unique protein accessions. Gene ontology (GO analysis suggested that a broad diversity of genes was represented in the resulting sequences. The realignment of individual reads to the contigs enabled the detection of 872,384 SNPs and 31,760 InDels. High resolution melting (HRM analysis was used to validate 91% of 192 putative SNPs identified by sequencing. Both allelic variants at about 95% of SNP sites identified among five wild, unimproved genotypes are still present in cultivated alfalfa, and all four US breeding programs also contain a high proportion of these SNPs. Thus, little evidence exists among this dataset for loss of significant DNA sequence diversity from either domestication or breeding of alfalfa. Structure analysis indicated that individuals from the subspecies falcata, the diploid subspecies caerulea, and the tetraploid subspecies sativa (cultivated tetraploid alfalfa were clearly separated. Conclusion We used transcriptome sequencing to discover large numbers of SNPs

  8. Epidemiological studies of Schistosoma mattheei infections in cattle in the highveld and lowveld communal grazing areas of Zimbabwe

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    D.M. Pfukenyi

    2006-09-01

    Full Text Available During the period between January 1999 and December 2000, the distribution and seasonal patterns of Schistosoma mattheei infections in cattle in the highveld and lowveld communal grazing areas of Zimbabwe were determined through monthly coprological examination. Faecal samples of cattle were collected from 12 and nine dipping sites in the highveld and lowveld communal grazing areas, respectively. Patterns of distribution and seasonal fluctuations of the intermediate host-snail populations and the climatic factors influencing the distribution were also determined at monthly intervals from November 1998 to October 2000, a period of 24 months, in six dams and six streams in the highveld and nine dams in the lowveld communal grazing areas. Monthly, each site was sampled for relative snail density, the vegetation cover and type, and physical and chemical properties of the water. Mean monthly rainfall and temperature were recorded. Snails collected at the same time were individually examined for shedding of cercariae of S. mattheei and Schistosoma haematobium. A total of 16 264 (5 418 calves, 5 461 weaners and 5 385 adults faecal samples were collected during the entire period of study and 734 (4.5 % were positive for S. mattheei eggs. Significantly higher prevalences were found in the highveld compared to the lowveld (P < 0.001, calves compared to adult cattle (P < 0.01 and the wet season compared to the dry season (P < 0.01. Faecal egg output peaked from October/ November to March / April for both years of the study. Bulinus globosus, the snail intermediate host of S. mattheei was recorded from the study sites with the highveld having a significantly higher abundance of the snails than the lowveld (P < 0.01. Monthly densities of B. globosus did not show a clearcut pattern although there were peaks between March / May and September / November. The mean num ber of snails collected was positively correlated with the water plants Nymphaea caerulea and

  9. CRUZAMIENTOS INTRA E INTERESPECIFICOS EN TURNERA , SERIE CANALIGERAE

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    María Mercedes Arbo

    2010-11-01

    ="background-color: #ffffff;" title="production of viable hybrids were considered as successes.">la producción de híbridos viables fueron consideradas como éxitos. 
    De las 136 combinaciones posibles (contando cada cruce y su recíproco a ser una cruz 53 híbridos y fracasos 83 fueron recuperados. 
    caerulea, T.sunnamensis and T.grandiflora are a closely associated group; the same occurs with the species with yellow flowers(T.scabra, T.subulata,">Capacidad de cruce entre las especies diploides indica que las especies con flores de color azul-blanca (T.caerulea, T.sunnamensis y T.grandiflora son un grupo estrechamente relacionado, y lo mismo ocurre con las especies de flores amarillas (T.scabra, T.subulata, T. Krapovickasii y T.concinna.Las especies con flores de color azul-blanco son genéticamente aisladas no sólo de las especies con flores amarillas, sino también del resto de las especies estudiadas aquí. 
    T.coriacea y T.hermannioides parecen ser también genéticamente aislada del resto de las especies consideradas aquí. 
    T.aff.coriacea y T.hermannioides parecen ser tambi

  10. Identification of invasive and expansive plant species based on airborne hyperspectral and ALS data

    Science.gov (United States)

    Szporak-Wasilewska, Sylwia; Kuc, Gabriela; Jóźwiak, Jacek; Demarchi, Luca; Chormański, Jarosław; Marcinkowska-Ochtyra, Adriana; Ochtyra, Adrian; Jarocińska, Anna; Sabat, Anita; Zagajewski, Bogdan; Tokarska-Guzik, Barbara; Bzdęga, Katarzyna; Pasierbiński, Andrzej; Fojcik, Barbara; Jędrzejczyk-Korycińska, Monika; Kopeć, Dominik; Wylazłowska, Justyna; Woziwoda, Beata; Michalska-Hejduk, Dorota; Halladin-Dąbrowska, Anna

    2017-04-01

    . Simultaneously to airborne data acquisitions also botanical surveys were performed covering in total 5680 reference plots for 18 alien invasive and native expansive plant species (1886 in first flight campaign, 1907 in second and 1887 in third). The collected data were used to identify species characteristics such as spectral properties among others (percentage cover, growth stage, discoloration, coexisting species, land use, plant litter). The research includes 10 invasive alien species and 8 native expansive plant species. Amongst plant species selected for the purposes of this study were: Robinia pseudoacacia, Padus serotina, Rumex confertus, Erigeron annuus, Spiraea tomentosa, Solidago spp., Lupinus polyphyllus, Reynoutria spp., Echinocystis lobata and Heracleum spp. as alien invasive species, and Urtica dioica, Filipendula ulmaria, Phragmites australis, Rubus spp, Calamagrostis epigejos, Cirsium arvense, Molinia caerulea, Deschampsia caespitosa as native expansive species. In this study we present the methodology used for identification of invasive alien and expansive native plant species using hyperspectral and airborne laser data with resulting accuracies using different classification methods and exemplary distribution maps. The research within this study will be continued during growing season of the year 2017. Acknowledgements This research has been carried out under the Biostrateg Programme of the Polish National Centre for Research and Development (NCBiR), project No.: DZP/BIOSTRATEG-II/390/2015: The innovative approach supporting monitoring of non-forest Natura 2000 habitats, using remote sensing methods (HabitARS).

  11. Nest survival of forest birds in the Mississippi Alluvial Valley

    Science.gov (United States)

    Twedt, D.J.; Wilson, R.R.; Henne-Kerr, J.L.; Hamilton, R.B.

    2001-01-01

    In the Mississippi Alluvial Valley, flood control has led to a drastic reduction in the area of forest habitat and altered the patchwork of forest cover types. Silvicultural management of the remaining fragmented forests has changed to reflect the altered hydrology of the forests, current economic conditions of the area, and demand for forest products. Because forest type and silvicultural management impact forest birds, differences in avian productivity within these forests directly impact bird conservation. To assist in conservation planning, we evaluated daily nest survival, nest predation rates, and brood parasitism rates of forest birds in relation to different forest cover types and silvicultural management strategies within this floodplain. Within bottomland hardwood forests, nest success of blue-gray gnatcatcher (Polioptila caerulea, 13%), eastern towhee (Pipilo erythrophthalmus, 28%), indigo bunting (Passerina cyanea, 18%), northern cardinal (Cardinalis cardinalis, 22%), and yellow-billed cuckoo (Coccyzus americanus, 18%) did not differ from that within intensively managed cottonwood plantations. However, average daily survival of 542 open-cup nests of 19 bird species in bottomland hardwoods (0.9516 + 0.0028, -27% nest success) was greater than that of 543 nests of 18 species in cotlonwood plantations (0.9298 + 0.0035, -15% nest success). Differences in daily nest survival rates likely resulted from a combination of differences in the predator community--particularly fire ants (Solenopsis invicta)--and a marked difference in species composition of birds breeding within these 2 forest types. At least 39% of nests in bottomland hardwood forests and 65% of nests in cottonwood plantations were depredated. Rates of parasitism by brown-headed cowbirds (Molothrus ater) were greater in managed cottonwoods (24%) than in bottomland hardwoods (9%). Nest success in planted cottonwood plantations for 18 species combined (-14%), and for yellow-breasted chat (Icteria

  12. 陕西省蓝田县新街遗址炭化植物遗存研究

    Institute of Scientific and Technical Information of China (English)

    钟华; 杨亚长; 邵晶; 赵志军

    2015-01-01

    The Xinjie Site was a settlement located at the Wei River Valley and the loess terrace of the Ba River’s east bank. This site was lasted from Late Yangshao period to Early Longshan period, and the remains in Late Yangshao period were the dominant ones. Systemic flotation work was carried out in the Xinjie Site, which showed abundant charred botanical material in terms of charred wooden fragments and seeds. The seeds composed of six kinds’ crops, including Setaria italica,Panicum miliaceum,Oryza sativa,Triticum aestivum,Glycine max and Cannabis sativa,and other known weeds involving Setaria viridis,Avena fatua,Glycine soja,Lespedeza bicolor,Melilotus suaveolens,Chenopodium album,Polygonum lapathifolium,Potentilla chinensis,Cyperus difformis, Arisaema erubescens,Amethystea caerulea etc. Among the crops excavated in the Xinjie Site,Setaria italica, Panicum miliaceum and Oryza sativa are the three richest ones both in the number of Absolute Counts and Ubiquity,while Setaria italica is the leading crop of the three ones. The composition of these crops shows the characteristic agricultural mode in the region where the dominant crops are millets and rice. Some Triticum aestivum and Glycine max were also been found. Through the analysis of weeds’ composition,we could find that the dry-land weeds represented by Setaria viridis and Chenopodium album are much more than the wet-land weeds,like Glycine soja and Cyperus difformis,which may associate with the large-scale cultivation of Setaria italica,or might reflect certain high level of field management of Oryza sativa.%新街遗址是一处位于渭河流域,灞河东岸黄土台地的聚落遗址。该遗址从仰韶时代晚期延续至龙山时代早期,又以仰韶晚期的遗存为主。对新街遗址开展的系统浮选工作,获得了丰富的炭化植物遗存,包括粟、黍、稻、小麦、大豆和大麻六种农作物以及其他可鉴定的植物种子还包括狗尾草、野燕麦、野大豆

  13. Taxonomic synopsis of the subtribe Physoderina (Coleoptera, Carabidae, Lebiini, with species revisions of eight genera

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    Hongliang Shi

    2013-04-01

    (Oberthür, 1883, comb. n. from Physodera; Diamella arrowi (Jedlička, 1935a, comb. n. from Allocota; Allocota aurata (Bates, 1873, comb. n. from Taicona; Dasiosoma bellum (Habu, 1979a, comb. n. from Teradaia; Dasiosoma indicum (Kirschenhofer, 2011, comb. n. from Dianella; Dasiosoma maindroni (Tian & Deuve, 2001, comb. n. from Lachnoderma; Dasiosoma hirsutum (Bates, 1873, comb. n. from Lachnoderma; Orionella discoidalis (Bates, 1892, comb. n. from Anchista; Orionella kathmanduensis (Kirschenhofer, 1994, comb. n. from Lachnoderma. Five names are newly placed as junior synonyms: Paraphaea eurydera (Chaudoir, 1877, junior synonym of Paraphaea binotata (Dejean, 1825; Anchista glabra Chaudoir, 1877, and Anchista nepalensis Kirschenhofer, 1994, junior synonyms of Anchista fenestrata (Schmidt-Göbel, 1846; Allocota caerulea Andrewes, 1933, junior synonym of Allocota viridipennis Motschulsky, 1859; Allocota perroti (Jedlička, 1963, junior synonym of Allocota aurata (Bates, 1873. One new replacement name is proposed: Dasiosoma basilewskyi, nom. n. for Dasiosoma hirsutum Basilewsky, 1949 (secondary junior homonym of Dasiosoma hirsutum (Bates, 1892. One species is downgraded to subspecies rank: Anchista fenestrata subpubescens Chaudoir, 1877, new rank.

  14. Environmental Conditions and Threatened and Endangered Species Populations near the Titan, Atlas, and Delta Launch Complexes, Cape Canaveral Air Station

    Science.gov (United States)

    Oddy, Donna M.; Stolen, Eric D.; Schmalzer, Paul A.; Hensley, Melissa A.; Hall, Patrice; Larson, Vickie L.; Turek, Shannon R.

    1999-01-01

    Titan, Atlas, and Delta launch complexes between 1995 and 1997. No direct impacts to scrub-jays were observed as a result of normal launches. The explosion of the Delta rocket in January 1997 caused direct impacts to the habitat of several scrub-jays families, from fire and debris; however, no scrub-jay mortality was observed. Mortality exceeded reproductive output at all areas over the course of the study. Populations of the southeastern beach mouse (Peromyscus polionotus niveiventris) populations, a Federally listed, threatened species, reside near all the launch complexes. Hurricane Erin and several other tropical storms impacted several areas at the inception of the study in 1995 causing coastal habitat alterations as a result of salt-water intrusion. Both the habitat and the beach mice populations recovered during the course of the study. No direct impacts to southeastern beach mice were observed as a result of normal launch operations. Direct impacts were observed to the habitat as a result of the explosion of the Delta rocket in January 1997. This alteration of the habitat resulted in a shift in use with the mice moving on to the newly burned part of the site. Waterbirds use wetlands and aquatic systems near the launch complexes. Species include the Federally-listed, endangered Wood Stork (Mycferia americana) and several state-listed species of special concern including the Snowy Egret (Egretfa thula fhula), Reddish Egret (Egreffa rufescens rufescens), White Ibis (Eudocimus albus), Roseate Spoonbill (Ajaia ajaja), Tricolored Heron (Egreffa tricolor ruficolis), and Little Blue Heron (Egreffa caerulea). No impacts to these populations resulting from any launch operations were observed. Gopher tortoises (Gopherus polyphemus) also occur around the launch complexes. Most of those observed appeared to be in good condition; however, upper respiratory tract disease is known to occur in the population. Cape Canaveral Air Station, including areas near active launch colexes

  15. Environmental Conditions and Threatened and Endangered Species Populations near the Titain, Atlas, and Delta Launch Complexes, Cape Canaveral Air Station

    Science.gov (United States)

    Oddy, Donna M.; Stolen, Eric D.; Schmalzer, Paul A.; Hensley, Melissa A.; Hall, Patrice; Larson, Vickie L.; Turek, Shannon R.

    1999-01-01

    located at Titan, Atlas, and Delta launch complexes between 1995 and 1997. No direct impacts to scrub-jays were observed as a result of normal launches. The explosion of the Delta rocket in January 1997 caused direct impacts to the habitat of several scrub-jays families, from fire and debris; however, no scrub-jay mortality was observed. Mortality exceeded reproductive output at all areas over the course of the study. Populations of the southeastern beach mouse (Peromyscus polionotus niveiventris) populations, a Federally listed, threatened species, reside near all the launch complexes. Hurricane Erin and several other tropical storms impacted several areas at the inception of the study in 1995 causing coastal habitat alterations as a result of salt-water intrusion. Both the habitat and the beach mice populations recovered during the course of the study. No direct impacts to southeastern beach mice were observed as a result of normal launch operations. Direct impacts were observed to the habitat as a result of the explosion of the Delta rocket in January 1997. This alteration of the habitant resulted in a shift in use with the mice moving on to the newly burned part of the site. Waterbirds use wetlands and aquatic systems near the launch complexes. Species include the Federally-listed, endangered Wood Stork (Mycteria americana) and several state-listed species of special concern including the Snowy Egret (Egretta thula thula), Reddish Egret (Egretta rufescens rufescens), White Ibis (Eudocimus albus), Roseate Spoonbill (Ajaia ajaja), Tricolored Heron (Egretta tricolor ruficolis), and Little Blue Heron (Egretta caerulea). No impacts to these populations resulting from any launch operations were observed. Gopher tortoises (Gopherus polyphemus) also occur around the launch complexes. Most of those observed appeared to be in good condition; however, upper respiratory tract disease is known to occur in the population. Cape Canaveral Air Station, including areas near active

  16. Threatened and Endangered Species Survey for Patrick Air Force Base, Florida

    Science.gov (United States)

    Oddy, Donna M.; Stolen, Eric D.; Schmalzer, Paul A.; Larson, Vickie L.; Hall, Patrice; Hensley, Melissa A.

    1997-01-01

    characteristic of species that occur in the Indian River Lagoon system. Twenty-five species of waterbirds were observed during quarterly surveys on PAFB, including five species listed as species of special concern by the state of Florida: Snowy Egret (Egretta thula), Little Blue Heron (Egretta caerulea), Tricolored Heron (Egretta tricolo4, White Ibis (Eudocimus albus), and Brown Pelican (Pelecanus occidentalis). The Golf Course was used extensively by almost all species of waterbirds on PAFB. Twenty-two species of shorebirds were observed on PAFB. Although no listed species were observed, the potential exists for several protected species of shorebirds to use the beach at PAFB during some parts of the year. The Airfield runways and associated grass areas were important sites at PAFB for loafing and feeding for some shorebirds. Surveys of rooftop nesting by Least Terns (Stema antillarum) on PAFB found a large colony on a rooftop in the PAFB Industrial Area. This colony produced some independent young. Two rooftop Least Tern colonies reported from previous years were inactive during 1996. A small number of Black Skimmers (Rhynchops nigee attempted to nest at the Least Ten colony but were unsuccessful. Surveys for the gopher tortoise (Gopherus polyphemus) revealed burrows and tortoises only at the Waste Study Site; five burrows and three tortoises were observed. No Florida scrub lizards (Sceloporus woodi), eastern indigo snakes (Drymarchon corais couperl), or diamondback terrapins (Malademys terrapin terrapin) were observed. American alligators (Alligator mississippiensis) were observed on the Golf Course and using ditches, ponds, and areas along the Banana River. The amount of dune habitat could be expanded by not mowing areas adjacent to the dunes to allow dune species to colonize and expand. Planting dune species as part of the beach renourishment project will also increase this habitat. Exotic plants dominate several areas on the base and are used by threatened, endangered, and

  17. Modelling the effects of environmental and individual variability when measuring the costs of first reproduction

    Directory of Open Access Journals (Sweden)

    Barbraud, C.

    2004-06-01

    costs of reproduction using data from a 17–year study of individually marked blue petrels (Halobaena caerulea, a small (190 g long–lived seabird breeding on sub–Antarctic islands. Data were analysed using multistate capture–recapture models (Brownie et al., 1993; Schwarz et al., 1993; Nichols et al., 1994. The most general model we started with was the conditional Arnason–Schwarz model (Schwarz et al., 1993. We used the following notation for states: 1. Nonbreeder that never previously bred; 2. First–time breeder; 3. Experienced breeder; and 4. Nonbreeder that previously bred. This general model was constrained since some parameters were not defined, given our definition of individual states. Using matrix notation, the parameters defined above can be summarized in matrices of survival, transition and capture probabilities: (see PDF. We examined the effect of two covariates that were suspected to affect survival and breeding probabilities: sea surface height representing oceanographic conditions at a regional scale, and body mass of birds during breeding. Covariates were tested through ultrastructural models in which survival probability is a function of sea surface height and/or body mass, following a linear–logistic function: (see PDF. where a is the intercept parameter, and b is a slope parameters. Our selection of models for estimation was based on model goodness–of–fit (GOF tests and a modified Akaike’s Information Criterion that takes into account sample sizes (AICc; see Akaike, 1973; Lebreton et al., 1992; Burnham & Anderson, 2002. We used program U–CARE (Choquet et al., 2003a for GOF testing, and M–SURGE (Choquet et al., 2003b for model selection and parameter estimation. The GOF test of our general model indicated a lack of fit and we used a variance inflation factor ( = 1.336 in the remaining analysis. Recapture probabilities varied with state. Recapture probability for breeders was extremely close to one. Experienced nonbreeders had

  18. Changes in the composition of aroma components in blue honeysuckle fruit at different developmental stages%蓝果忍冬果实不同发育期香气成分构成及对比分析

    Institute of Scientific and Technical Information of China (English)

    刘朋; 赵毅; 赵利娟; 辛秀兰; 娄爽; 霍俊伟; 秦栋; 马旿晛; 刘煜池

    2016-01-01

    components differed in the three growth periods.In ‘ Berel' fruit,the content of aldehydes was 70.98% of the total aroma components in fruit at setting period,and alcohols and hydrocarbons accounted for 44.64% and 22.93% of the total aroma components in the color break period,respectively,while in mature fruit,fruitalcohols,hydrocarbons and aldehydes accounted for 13.71%,30.89 % and 32.26%,respectively.In the ‘ C-1',maj or compounds were aldehydes (65.62%) in fruit setting period,alcohols (55.54%) and hydrocarbons (26.5%) at color break,and alcohols (21.28%),hydrocarbons (37.29%) and aldehydes (17.76%) in maturation period.[Conclusion] There was great difference in composition of aroma compounds in different developmental periods of blue honeysuckle fruit and in different cultivars.Aroma components of blue honeysuckle fruit consisted mainly of hydrocarbons,alcohols and aldehydes in all periods of development.Alcohols were dominated in fruit setting period and hydrocarbons,alcohols and aldehydes were dominant in the mature fruit.The types of aroma components increased during fruit development and were more diversified in ‘ C-1' fruit than that in ‘ Berel' during the same period.%[目的]探究蓝果忍冬果实香气成分的构成及变化.[方法]采用顶空-固相微萃取法(HS-SPME)和气相色谱-质谱(GC-MS)联用技术对蓝果忍冬(Lonicera caeruleaL.)‘蓓蕾’和‘长白山1号’2个品种(系)果实坐果期、转色期、成熟期的香气成分进行检测分析.[结果]蓝果忍冬果实所包含的香气成分主要以醇类、烃类和醛类为主.2个品种(系)的蓝果忍冬果实在3个生长时期共检测出78种香气成分.随着蓝果忍冬果实成熟,烃类物质相对含量呈上升趋势,醛类物质相对含量呈先下降再上升,而醇类物质相对含量呈先上升再下降趋势,并检测到2个品种(系)成熟期主要以二丁基羟基甲苯、(E)-2-己烯醛、己醛、0[-松油醇、卜丁醇