Sample records for sailfish istiophorus platypterus
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Bruno L. Mourato
Full Text Available Pop-up satellite archival tags (PSATs were deployed on four sailfish, Istiophorus platypterus, in the coastal waters of Rio de Janeiro State in southeast Brazil during January and February of 2009 (sailfish I and II and between November 2010 and January 2011 (sailfish III and IV. The total number of days monitored (i.e., time that the tags remained attached were 12 (sailfish I, 51 (sailfish II, 16 (sailfish III and 43 days (sailfish IV. The results indicate a clear pattern of vertical habitat utilization with the majority of the time spent concentrated near the uniform sea surface layer occupying a relatively narrow temperature range. Despite the clear preference for epipelagic surface waters, sailfish regularly undertook vertical excursions into deeper waters (>50 m within three to six hour intervals. "Most Probable Tracks" (estimated from raw geolocations using the state-space Kalman filter model and linear displacements suggested that tagged sailfish did not move significant distances from the tagging site. In brief, our report provides information regarding the biology of sailfish in the southwestern Atlantic and how vertical distributions during the day and night are influenced by water temperature and how this information can improve sailfish stock assessments in southwestern Atlantic Ocean.
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René Macías-Zamora; Aramis Olivos-Ortiz; Ana Luisa Vidaurri-Sotelo; Miguel Ángel Carrasco-Águila; Ernesto Torres-Orozco
2011-01-01
Utilizando los datos de captura y esfuerzo registrados en la pesca deportiva realizada en los puertos de Mazatlán, Sinaloa y Buena Vista, Baja California Sur, México, durante los periodos 1979-2005 y 1985-2006 respectivamente, se construyó un año "tipo" o promedio, y se elaboró un modelo espacial determinístico en tiempo discreto para simular los movimientos masivos estacionales que realiza el pez vela (Istiophorus platypterus) en la Zona Económica Exclusiva del Pacífico mexicano. Los parámet...
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2010-09-22
... (Makaira nigricans), white marlin (Tetrapturus albidus), sailfish (Istiophorus platypterus), and longbill... (Tetrapturus spp. and Makaira spp.), oceanic sharks, sailfishes (Istiophorus spp.), and swordfish (Xiphias...
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Rossi, E A; Shepard, S R; Poyer, J C; Hartmann, J X
1992-06-01
Balb/c mice were immunized with albumin purified from sailfish (Istiophorus albicans) serum. Hybridomas were produced and screened by ELISA for reactivity with the purified albumins of sailfish, blue marlin (Makaira nigricans) and white marlin (Tetrapturus albidus). Monoclonal antibodies (MAbs) from 16 different clones exhibited activity against sailfish albumin. Thirteen of the MAbs showed cross-reactivity with the marlin species. Three MAbs exhibited distinct specificity for sailfish albumin. One of these species specific MAbs (M2D1) was conjugated to horseradish peroxidase (HRP) in order to construct an ELISA for identification of sailfish from serum. The ELISA for sailfish correctly identified eight sailfish from 26 billfish serum samples. The MAb-peroxidase conjugate was highly specific toward sailfish in that no reaction against heterologous species was detected.
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Crecimiento de Istiophorus platypterus (Pisces: Istiophoridae en la boca del Golfo de California
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Reyna Alvarado-Castillo
1998-03-01
Full Text Available Specimens (733 of Istiohporus platypterus caught by sport fishing in the southern of the California Gulf were measured. The fourth spine of the dorsal fin was collected to estimate the age and individuals from 1 to 8 years were found. The majority of the specimens were between 180 and 210 cm in lower jaw-fork length. The Bertalanffy growth ecuation estimated using length was: Lt=203.6[-e-08(t+0.0015]. Growth was shown to very fast in the early years.
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Fathur Rochman
2013-12-01
Full Text Available Billfishes area by cacth of tuna long line vessels in Indian Ocean. Billfish are consist of swordfish Xiphias gladius, black marlin Makaira indica, indo facific blue marlin Makaira mazara, stripe marlin Tetrapturus audax, indo facific sailfish Istiophorus platypterus and shortbill spearfish Tetrapturus angustirostris. Besides that, billfishes also have important economic value compared with tuna as an exsported species such as swordfish and marlin. To optimize the catch of billfishes in Indian Ocean, data and information of potential fishing ground, size and catch composition of this species are needed. The billfishes cacth composition collected in 2011 were dominated by 45% swordfish, 20% black marlin, 19% blue marlin,9% short bill spearfish, 6% sailfish and 1%stripe marlin. The billfishes size range which were caught between 60 - 280 cm LJFL (Lower Jaw Fork Length. The sword fish average length was 150 cm, blue marlin 197 cm, black Marlin 189 cm, sailfish 150cm ,short bill spearfish 144 cm and stripe marlin159 cm. From this observation, it was found that most of billfishes caught were in mature.
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CATCH ESTIMATION AND SIZE DISTRIBUTION OF BILLFISHES LANDED IN PORT OF BENOA, BALI
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Bram Setyadji
2012-06-01
Full Text Available Billfishes are generally considered as by-product in tuna long line fisheries that have high economic value in the market. By far, the information about Indian Ocean billfish biology and fisheries especially in Indonesia is very limited. This research aimed to elucidate the estimation of production and size distribution of billfishes landed in port of Benoa during 2010 (February – December through daily observation at the processing plants. The result showed that the landings dominated by Swordfish (Xiphias gladius 54.9%, Blue marlin (Makaira mazara 17.8% and Black marlin (Makaira indica 13.0% respectively, followed by small amount of striped marlin (Tetrapturus audax, sailfish (Istiophorus platypterus, and shortbil spearfish (Tetrapturus Angustirostris. Generally the individual size of billfishes range between 68 and 206 cm (PFL, and showing negative allometric pattern except on swordfish that was isometric. Most of the billfish landed haven’t reached their first sexual maturity.
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Habitat and food partitioning of billfishes (Xiphioidei).
Shimose, T; Yokawa, K; Saito, H
2010-06-01
Species composition and food habits of four istiophorid billfishes were investigated and compared in three different tropical areas of the eastern North Pacific Ocean by longline operations from September to November 2004. Sailfish Istiophorus platypterus, shortbill spearfish Tetrapturus angustirostris and blue marlin Makaira nigricans had specific habitat preferences and mainly occurred in the near-continent area (13-16 degrees N; 103-107 degrees W), the open-ocean area (16-18 degrees N; 118-134 degrees W) and the near-equator area (5 degrees N; 104-120 degrees W). Small (/=140 cm) individuals occurred throughout all three areas. Prey compositions of large K. audax in the three areas were different from one other reflecting the prey availability in each area. In the open-ocean area, molid fishes were dominant in mass for both large K. audax (49%) and T. angustirostris (73%), and large K. audax also fed on ostraciid (33%) and scombrid fishes (15%). In the near-continent area, tetraodontid fishes were dominant for large and small I. platypterus (54, 57%), and both large and small K. audax also fed on tetraodontid fishes (3, 12%). Large K. audax in this area fed mainly on scombrid fishes (86%). These results indicate that large K. audax show overlaps but little segregations of its prey with other billfishes. In the near-equator area, stomach contents of large K. audax and M. nigricans were few and billfish prey items were thought to be scarce.
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Rooker, Jay R; Simms, Jeff R; Wells, R J David; Holt, Scott A; Holt, G Joan; Graves, John E; Furey, Nathan B
2012-01-01
Ichthyoplankton surveys were conducted in surface waters of the northern Gulf of Mexico (NGoM) over a three-year period (2006-2008) to determine the relative value of this region as early life habitat of sailfish (Istiophorus platypterus), blue marlin (Makaira nigricans), white marlin (Kajikia albida), and swordfish (Xiphias gladius). Sailfish were the dominant billfish collected in summer surveys, and larvae were present at 37.5% of the stations sampled. Blue marlin and white marlin larvae were present at 25.0% and 4.6% of the stations sampled, respectively, while swordfish occurred at 17.2% of the stations. Areas of peak production were detected and maximum density estimates for sailfish (22.09 larvae 1000 m(-2)) were significantly higher than the three other species: blue marlin (9.62 larvae 1000 m(-2)), white marlin (5.44 larvae 1000 m(-2)), and swordfish (4.67 larvae 1000 m(-2)). The distribution and abundance of billfish and swordfish larvae varied spatially and temporally, and several environmental variables (sea surface temperature, salinity, sea surface height, distance to the Loop Current, current velocity, water depth, and Sargassum biomass) were deemed to be influential variables in generalized additive models (GAMs). Mesoscale features in the NGoM affected the distribution and abundance of billfish and swordfish larvae, with densities typically higher in frontal zones or areas proximal to the Loop Current. Habitat suitability of all four species was strongly linked to physicochemical attributes of the water masses they inhabited, and observed abundance was higher in slope waters with lower sea surface temperature and higher salinity. Our results highlight the value of the NGoM as early life habitat of billfishes and swordfish, and represent valuable baseline data for evaluating anthropogenic effects (i.e., Deepwater Horizon oil spill) on the Atlantic billfish and swordfish populations.
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Directory of Open Access Journals (Sweden)
Jay R Rooker
Full Text Available Ichthyoplankton surveys were conducted in surface waters of the northern Gulf of Mexico (NGoM over a three-year period (2006-2008 to determine the relative value of this region as early life habitat of sailfish (Istiophorus platypterus, blue marlin (Makaira nigricans, white marlin (Kajikia albida, and swordfish (Xiphias gladius. Sailfish were the dominant billfish collected in summer surveys, and larvae were present at 37.5% of the stations sampled. Blue marlin and white marlin larvae were present at 25.0% and 4.6% of the stations sampled, respectively, while swordfish occurred at 17.2% of the stations. Areas of peak production were detected and maximum density estimates for sailfish (22.09 larvae 1000 m(-2 were significantly higher than the three other species: blue marlin (9.62 larvae 1000 m(-2, white marlin (5.44 larvae 1000 m(-2, and swordfish (4.67 larvae 1000 m(-2. The distribution and abundance of billfish and swordfish larvae varied spatially and temporally, and several environmental variables (sea surface temperature, salinity, sea surface height, distance to the Loop Current, current velocity, water depth, and Sargassum biomass were deemed to be influential variables in generalized additive models (GAMs. Mesoscale features in the NGoM affected the distribution and abundance of billfish and swordfish larvae, with densities typically higher in frontal zones or areas proximal to the Loop Current. Habitat suitability of all four species was strongly linked to physicochemical attributes of the water masses they inhabited, and observed abundance was higher in slope waters with lower sea surface temperature and higher salinity. Our results highlight the value of the NGoM as early life habitat of billfishes and swordfish, and represent valuable baseline data for evaluating anthropogenic effects (i.e., Deepwater Horizon oil spill on the Atlantic billfish and swordfish populations.
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Fluid dynamics in porous media with Sailfish
Coelho, Rodrigo C. V.; Neumann, Rodrigo F.
2016-09-01
In this work we show the application of Sailfish to the study of fluid dynamics in porous media. Sailfish is an open-source software based on the lattice-Boltzmann method. This application of computational fluid dynamics is of particular interest to the oil and gas industry and the subject could be a starting point for an undergraduate or graduate student in physics or engineering. We built artificial samples of porous media with different porosities and used Sailfish to simulate the fluid flow through them in order to calculate their permeability and tortuosity. We also present a simple way to obtain the specific superficial area of porous media using Python libraries. To contextualise these concepts, we analyse the applicability of the Kozeny-Carman equation, which is a well-known permeability-porosity relation, to our artificial samples.
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Hydrodynamic characteristics of sailfish and swordfish
Sagong, Woong; Jeon, Woo-Pyung; Choi, Haecheon
2009-11-01
The sailfish and swordfish are known as fastest sea animals, reaching their maximum speeds of more than 100km/h. Recently, Sagong et al. (2008, Phys. Fluids) investigated the role of V- shaped protrusions existing on the sailfish skin in the skin-friction reduction but those protrusions did not make a direct role in reducing drag. On the other hand, the long bill has been regarded as a device of reducing drag by separation delay through turbulence generation. In the present study, we investigate the hydrodynamic characteristics of sailfish and swordfish by installing the stuffed ones in a wind tunnel and measuring the drag on their bodies and boundary-layer velocities above the body surfaces. The drag coefficients of sailfish and swordfish are 0.0075 and 0.009 based on the free-stream velocity and wetted area, respectively. They are comparable to or smaller than those of other kinds of fish such as the dogfish, tuna and trout. Next, the role of bill on the drag is studied. The drag without bill or with an artificial short bill is lower than that with the original long bill, indicating that the bill does not reduce the drag at all. From the velocity measurement near the body surfaces, we found that flow separation does not occur even without bill, and thus the conjecture that the flow separation is delayed through turbulence generation by the bill is not valid.
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Fluid dynamics in porous media with Sailfish
International Nuclear Information System (INIS)
Coelho, Rodrigo C V; Neumann, Rodrigo F
2016-01-01
In this work we show the application of Sailfish to the study of fluid dynamics in porous media. Sailfish is an open-source software based on the lattice-Boltzmann method. This application of computational fluid dynamics is of particular interest to the oil and gas industry and the subject could be a starting point for an undergraduate or graduate student in physics or engineering. We built artificial samples of porous media with different porosities and used Sailfish to simulate the fluid flow through them in order to calculate their permeability and tortuosity. We also present a simple way to obtain the specific superficial area of porous media using Python libraries. To contextualise these concepts, we analyse the applicability of the Kozeny–Carman equation, which is a well-known permeability–porosity relation, to our artificial samples. (paper)
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Feeding habits of billfishes (Carangaria: Istiophoriformes in the Ecuadorian Pacific Ocean
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Peggy Loor-Andrade
2017-09-01
Full Text Available ABSTRACT The feeding habits of Makaira nigricans, Kajikia audax, Istiophorus platypterus (Istiophoridae, and Xiphias gladius (Xiphiidae in the southeast Pacific Ocean were examined in Manta and Santa Rosa, Ecuador. This study describes the diets of these billfish species, evaluates dietary differences between species, and assesses seasonal differences in diet. A total of 274 M. nigricans, 321 K. audax, 267 I. platypterus, and 252 X. gladius were collected between February 2014 and April 2015. The scombrid Auxis spp. was the most important prey for M. nigricans, K. audax and I. platypterus, while the squid Dosidicus gigas was the most important prey for X. gladius. The results of the ANOSIM confirmed significant differences in feeding habits between the members of the family Istiophoridae and X. gladius. Seasonal differences for I. platypterus also were observed. Billfishes are specialist consumers with a narrow niche breadth (B a: M. nigricans and K. audax=0.1, I. platypterus=0.05, and X. gladius=0.04.
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Feeding ecology of pelagic fish larvae and juveniles in slope waters of the Gulf of Mexico.
Wells, R J D; Rooker, J R
2009-11-01
Stable isotope ratios of carbon (delta13C) and nitrogen (delta15N) were used to investigate feeding patterns of larval and early juvenile pelagic fishes in slope waters of the Gulf of Mexico. Contribution of organic matter supplied to fishes and trophic position within this pelagic food web was estimated in 2007 and 2008 by comparing dietary signatures of the two main producers in this ecosystem: phytoplankton [based on particulate organic matter (POM)] and Sargassum spp. Stable isotope ratios of POM and pelagic Sargassum spp. were significantly different from one another with delta13C values of POM depleted by 3-6 per thousand and delta15N values enriched by 2 relative to Sargassum spp. Stable isotope ratios were significantly different among the five pelagic fishes examined: blue marlin Makaira nigricans, dolphinfish Coryphaena hippurus, pompano dolphinfish Coryphaena equiselis, sailfish Istiophorus platypterus and swordfish Xiphias gladius. Mean delta13C values ranged almost 2 among fishes and were most depleted in I. platypterus. In addition, mean delta15N values ranged 4-5 with highest mean values found for both C. hippurus and C. equiselis and the lowest mean value for M. nigricans during both years. Increasing delta13C or delta15N with standard length suggested that shifts in trophic position and diet occurred during early life for several species examined. Results of a two-source mixing model suggest approximately an equal contribution of organic matter by both sources (POM=55%; pelagic Sargassum spp.=45%) to the early life stages of pelagic fishes examined. Contribution of organic matter, however, varied among species, and sensitivity analyses indicated that organic source estimates changed from 2 to 13% for a delta(13)C fractionation change of +/-0.25 per thousand or a delta15N fractionation change of +/-1.0 per thousand relative to original fractionation values.
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Directory of Open Access Journals (Sweden)
Carlos E. Callega
2014-06-01
Full Text Available Total mercury results in eleven samples of sail fish and eleven samples of marlin from national market places (where they are called with those names, from a study by the Costarican Fishing Federation, are presented. Sail fish samples vary between 0,85 and 1,30 mg of mercury/kg of fish, with an average of (1,07±0,17 mg of mercury/kg of fish, and marlin samples varied between 0,41 and 1,18 mg of mercury/kg of fish with an average of (0,83±0,27 mg of mercury/kg of fish. Both cases showed mercury concentrations close to the maximum recommended value of the World Health Organization (WHO of 1 mg of mercury/kg of fish for predatory species. At least 64% of the samples were equal to or above the toxicological threshold of WHO, defined as the provisional tolerable weekly intake, PTWI, calculated for portion sizes between 100 g and 150 g. Results show the presence of mercury in these samples, and are used to interpret mercury content compared to WHO values and propose recommendations for Costa Rica. These results are consistent with mercury accumulation in the ocean and in predatory fish observed worldwide, documented with a large number of references.
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DEFF Research Database (Denmark)
Svendsen, Morten Bo Søndergaard; Domenici, Paolo; Marras, Stefano
2016-01-01
Billfishes are considered to be among the fastest swimmers in the oceans. Previous studies have estimated maximum speed of sailfish and black marlin at around 35 m s(-1) but theoretical work on cavitation predicts that such extreme speed is unlikely. Here we investigated maximum speed of sailfish...
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Directory of Open Access Journals (Sweden)
Morten B. S. Svendsen
2016-10-01
Full Text Available Billfishes are considered to be among the fastest swimmers in the oceans. Previous studies have estimated maximum speed of sailfish and black marlin at around 35 m s−1 but theoretical work on cavitation predicts that such extreme speed is unlikely. Here we investigated maximum speed of sailfish, and three other large marine pelagic predatory fish species, by measuring the twitch contraction time of anaerobic swimming muscle. The highest estimated maximum swimming speeds were found in sailfish (8.3±1.4 m s−1, followed by barracuda (6.2±1.0 m s−1, little tunny (5.6±0.2 m s−1 and dorado (4.0±0.9 m s−1; although size-corrected performance was highest in little tunny and lowest in sailfish. Contrary to previously reported estimates, our results suggest that sailfish are incapable of exceeding swimming speeds of 10-15 m s−1, which corresponds to the speed at which cavitation is predicted to occur, with destructive consequences for fin tissues.
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Marras, Stefano; Noda, Takuji; Steffensen, John F; Svendsen, Morten B S; Krause, Jens; Wilson, Alexander D M; Kurvers, Ralf H J M; Herbert-Read, James; Boswell, Kevin M; Domenici, Paolo
2015-10-01
Billfishes are considered among the fastest swimmers in the oceans. Despite early estimates of extremely high speeds, more recent work showed that these predators (e.g., blue marlin) spend most of their time swimming slowly, rarely exceeding 2 m s(-1). Predator-prey interactions provide a context within which one may expect maximal speeds both by predators and prey. Beyond speed, however, an important component determining the outcome of predator-prey encounters is unsteady swimming (i.e., turning and accelerating). Although large predators are faster than their small prey, the latter show higher performance in unsteady swimming. To contrast the evading behaviors of their highly maneuverable prey, sailfish and other large aquatic predators possess morphological adaptations, such as elongated bills, which can be moved more rapidly than the whole body itself, facilitating capture of the prey. Therefore, it is an open question whether such supposedly very fast swimmers do use high-speed bursts when feeding on evasive prey, in addition to using their bill for slashing prey. Here, we measured the swimming behavior of sailfish by using high-frequency accelerometry and high-speed video observations during predator-prey interactions. These measurements allowed analyses of tail beat frequencies to estimate swimming speeds. Our results suggest that sailfish burst at speeds of about 7 m s(-1) and do not exceed swimming speeds of 10 m s(-1) during predator-prey interactions. These speeds are much lower than previous estimates. In addition, the oscillations of the bill during swimming with, and without, extension of the dorsal fin (i.e., the sail) were measured. We suggest that extension of the dorsal fin may allow sailfish to improve the control of the bill and minimize its yaw, hence preventing disturbance of the prey. Therefore, sailfish, like other large predators, may rely mainly on accuracy of movement and the use of the extensions of their bodies, rather than resorting
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Ho, Ju-shey; Collete, Bruce B; Madinabeitia, Ione
2006-10-01
Three species of remoras--Remora brachyptera (Lowe), Remora osteochir (Cuvier), and Remora remora (Linnaeus)--were collected from 4 species of billfishes--Istiophorus platypterus (Shaw), Makaira nigricans Lacepéde, Tetrapturus albidus Poey, and Tetrapturus pfluegeri Robins and de Sylva--on board a Japanese long-liner Shoyo Maru during her cruise in 2002 across the Atlantic. However, only the marlin sucker (R. osteochir) was found to carry a parasitic copepod, Lepeophtheirus crassus (Wilson and Bere, 1936). Although 12 species of parasitic copepods have been reported from billfishes around the world ocean, none of them is L. crassus. Thus, L. crassus is considered a parasite specific to the marlin sucker.
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Perfil de ácidos grasos de diversas especies de pescados consumidos en México
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María Isabel Castro González
2013-12-01
Full Text Available Los factores bióticos y abióticos determinan la composición de ácidos grasos AG en los peces, información relevante por la asociación existente entre su consumo y los beneficios para la salud humana. El objetivo de esta investigación fue identificar la variación en la concentración de AG, según diferentes factores, en diez especies marinas de pescado comestible en México: Euthynnus alletteratus, Sciaenops ocellatus, Bairdiella chrysoura, Sphyraena guachancho, Symphurus elongatus, Istiophorus platypterus, Ophichthus rex, Eugerres plumieri, Eucinostomus entomelas y Oreochromis mossambicus. La determinación de AG se llevó a cabo mediante cromatografía de gases. El contenido de lípidos totales varió entre 0.93 y 1.95g/100g en E. entomelas y O. mossambicus, respectivamente. E. alletteratus, B. chrysoura, S elongatus, I. platypterus, O. rex y E. plumieri presentaron el siguiente orden en la concentración de AG: AG poliinsaturados AGPAG saturados AGSAG monoinsaturados AGM. S. ocellatus, S. guachancho y E. entomelas: AGSAGPAGM; mientras que tan solo O. mossambicus presentó AGSAGMAGP. Este tuvo la mayor concentración de AGS 559.40mg/100g y AGM 422.60mg/100g, mientras que B. chrysoura presentó el mayor contenido mg/100g de AGP 663.03, AGn-3 514.03, EPA+DHA 506.10 y AGn-6 145.80. Factores bióticos y abióticos influyeron significativamente en la concentración de AG. Las especies subtropicales presentaron una concentración 42.1 mayor de EPA+DHA que las tropicales. Los valores presentados pueden cambiar según modificaciones en el ecosistema y en las características de cada especie, sin embargo, el conocimiento aquí generado es útil para mejorar las recomendaciones sobre el consumo de pescado.
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Eslava, Nora; González, Leo W; Gaertner, Daniel
2003-03-01
The longline hooks suspension depth was estimated using the Mechanic Imitation of Flexible Systems method. The vertical distribution of tunas and billfish was determined by the relative abundance index, obtained from the catch by 11 to 25 m -long longline vessels, -based at Cumaná, Venezuela, South-eastern Caribbean Sea in depths of 65 to 142 m. The CPUE was evaluated per species, according to depth. High values were found for most of the captured species in the layer from 105 to 125 m. Yellowfin tuna (Thunnus albacares) showed the highest yield (3.37 fish/100 hooks) and blue marlin (Makaira nigricans) the lowest (0.04 fish/100 hooks). However, the statistical comparison did not allow to reject the hypothesis of lack of depth efect (Kruskal-Wallis p > .05), and demonstrated a homogeneous distribution of yellowfin tuna (Thunnus albacares), albacore (Thunnus alalunga), bigeye tuna (Thunnus obesus), sailfish (Istiophorus albicans), white marlin (Tetrapturus albidus) and blue marlin (Makaira nigricans) in the water column. The conclusion is that fish concentration in the Southern border of the Caribbean Sea is possibly due to several hydroclimatic factors--which affect tuna and billfish catching--such as water temperature and dissolved oxygen concentration which limit the distribution according to depth.
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Armando T. Wakida-Kusunoki; Luis Enrique Amador del Angel
2008-01-01
Se reporta la presencia de los plecos Pterygoplichthys pardalis y P. disjunctivus en nuevas localidades en el sureste de México. Los organismos fueron colectados en los ríos San Pedro y Palizada en el estado de Campeche en diciembre de 2007. Estos registros representan el primer reporte en México de P. disjunctivus y el primero de P. pardalis en Campeche.The sailfish catfishes Pterygoplichthys pardalis and P. disjunctivus are reported in new localities in Southeastern Mexico. The specimens we...
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Sailfish: A flexible multi-GPU implementation of the lattice Boltzmann method
Januszewski, M.; Kostur, M.
2014-09-01
We present Sailfish, an open source fluid simulation package implementing the lattice Boltzmann method (LBM) on modern Graphics Processing Units (GPUs) using CUDA/OpenCL. We take a novel approach to GPU code implementation and use run-time code generation techniques and a high level programming language (Python) to achieve state of the art performance, while allowing easy experimentation with different LBM models and tuning for various types of hardware. We discuss the general design principles of the code, scaling to multiple GPUs in a distributed environment, as well as the GPU implementation and optimization of many different LBM models, both single component (BGK, MRT, ELBM) and multicomponent (Shan-Chen, free energy). The paper also presents results of performance benchmarks spanning the last three NVIDIA GPU generations (Tesla, Fermi, Kepler), which we hope will be useful for researchers working with this type of hardware and similar codes. Catalogue identifier: AETA_v1_0 Program summary URL:http://cpc.cs.qub.ac.uk/summaries/AETA_v1_0.html Program obtainable from: CPC Program Library, Queen's University, Belfast, N. Ireland Licensing provisions: GNU Lesser General Public License, version 3 No. of lines in distributed program, including test data, etc.: 225864 No. of bytes in distributed program, including test data, etc.: 46861049 Distribution format: tar.gz Programming language: Python, CUDA C, OpenCL. Computer: Any with an OpenCL or CUDA-compliant GPU. Operating system: No limits (tested on Linux and Mac OS X). RAM: Hundreds of megabytes to tens of gigabytes for typical cases. Classification: 12, 6.5. External routines: PyCUDA/PyOpenCL, Numpy, Mako, ZeroMQ (for multi-GPU simulations), scipy, sympy Nature of problem: GPU-accelerated simulation of single- and multi-component fluid flows. Solution method: A wide range of relaxation models (LBGK, MRT, regularized LB, ELBM, Shan-Chen, free energy, free surface) and boundary conditions within the lattice
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Larval assemblages of large and medium-sized pelagic species in the Straits of Florida
Richardson, David E.; Llopiz, Joel K.; Guigand, Cedric M.; Cowen, Robert K.
2010-07-01
Critical gaps in our understanding of the distributions, interactions, life histories and preferred habitats of large and medium-size pelagic fishes severely constrain the implementation of ecosystem-based, spatially structured fisheries management approaches. In particular, spawning distributions and the environmental characteristics associated with the early life stages are poorly documented. In this study, we consider the diversity, assemblages, and associated habitat of the larvae of large and medium-sized pelagic species collected during 2 years of monthly surveys across the Straits of Florida. In total, 36 taxa and 14,295 individuals were collected, with the highest diversity occurring during the summer and in the western, frontal region of the Florida Current. Only a few species (e.g. Thunnus obesus, T. alalunga, Tetrapturus pfluegeri) considered for this study were absent. Small scombrids (e.g. T. atlanticus, Katsuwonus pelamis, Auxis spp.) and gempylids dominated the catch and were orders of magnitude more abundant than many of the rare species (e.g. Thunnus thynnus,Kajikia albida). Both constrained (CCA) and unconstrained (NMDS) multivariate analyses revealed a number of species groupings including: (1) a summer Florida edge assemblage (e.g. Auxis spp., Euthynnus alleterattus, Istiophorus platypterus); (2) a summer offshore assemblage (e.g. Makaira nigricans, T. atlanticus, Ruvettus pretiosus, Lampris guttatus); (3) an ubiquitous assemblage (e.g. K. pelamis, Coryphaena hippurus, Xiphias gladius); and (4) a spring/winter assemblage that was widely dispersed in space (e.g. trachipterids). The primary environmental factors associated with these assemblages were sea-surface temperature (highest in summer-early fall), day length (highest in early summer), thermocline depth (shallowest on the Florida side) and fluorescence (highest on the Florida side). Overall, the results of this study provide insights into how a remarkable diversity of pelagic species
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Directory of Open Access Journals (Sweden)
Nora Eslava
2003-03-01
most of the captured species in the layer from 105 to 125 m. Yellowfin tuna (Thunnus albacare s showed the highest yield (3.37 fish/100 hooks and blue marlin (Makaira nigricans the lowest (0.04 fish/100 hooks. However, the statistical comparison did not allow to reject the hypothesis of lack of depth efect (Kruskal-Wallis p>.05, and demonstrated a homogeneous distribution of yellowfin tuna (Thunnus albacares, albacore (Thunnus alalung a, bigeye tuna (Thunnus obesus, sailfish (Istiophorus albican s, white marlin (Tetrapturus albidus and blue marlin (Makaira nigricans in the water column. The conclusion is that fish concentration in the Southern border of the Caribbean Sea is possibly due to several hydroclimatic factors -which affect tuna and billfish catching- such as water temperature and disolved oxigen concentration which limit the distribution according to depth.
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Li, Peipei; Piao, Yongjun; Shon, Ho Sun; Ryu, Keun Ho
2015-10-28
Recently, rapid improvements in technology and decrease in sequencing costs have made RNA-Seq a widely used technique to quantify gene expression levels. Various normalization approaches have been proposed, owing to the importance of normalization in the analysis of RNA-Seq data. A comparison of recently proposed normalization methods is required to generate suitable guidelines for the selection of the most appropriate approach for future experiments. In this paper, we compared eight non-abundance (RC, UQ, Med, TMM, DESeq, Q, RPKM, and ERPKM) and two abundance estimation normalization methods (RSEM and Sailfish). The experiments were based on real Illumina high-throughput RNA-Seq of 35- and 76-nucleotide sequences produced in the MAQC project and simulation reads. Reads were mapped with human genome obtained from UCSC Genome Browser Database. For precise evaluation, we investigated Spearman correlation between the normalization results from RNA-Seq and MAQC qRT-PCR values for 996 genes. Based on this work, we showed that out of the eight non-abundance estimation normalization methods, RC, UQ, Med, TMM, DESeq, and Q gave similar normalization results for all data sets. For RNA-Seq of a 35-nucleotide sequence, RPKM showed the highest correlation results, but for RNA-Seq of a 76-nucleotide sequence, least correlation was observed than the other methods. ERPKM did not improve results than RPKM. Between two abundance estimation normalization methods, for RNA-Seq of a 35-nucleotide sequence, higher correlation was obtained with Sailfish than that with RSEM, which was better than without using abundance estimation methods. However, for RNA-Seq of a 76-nucleotide sequence, the results achieved by RSEM were similar to without applying abundance estimation methods, and were much better than with Sailfish. Furthermore, we found that adding a poly-A tail increased alignment numbers, but did not improve normalization results. Spearman correlation analysis revealed that RC, UQ
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2012-08-21
..., West Atlantic sailfish, or North Atlantic swordfish in states (and the United States Virgin Islands and... Collection; Comment Request; Atlantic Highly Migratory Species Recreational Landings Reports AGENCY: National... provides important data used to monitor catches of Atlantic highly migratory species (HMS) and supplements...
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Editorial: Nature-inspired flight - beyond the leap
Lentink, D.; Biewener, A.A.
2010-01-01
Whereas humans can outrun horses over large distances (BBC News 2004), because of their adaptation for endurance (Bramble and Lieberman 2004), their swimming performance is mediocre compared to that of tuna and sailfish, and flight is impossible. No wonder that the flight of animals and plants such
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Environmental Assessment of Demolition Activities at Dover Air Force Base, Delaware
2003-11-01
Setophaga ruticilla), broad- winged hawk (Buteo platypterus), cliff swallow (Petrochelidon pyrrhonota), bank swallow ( Riparia riparia ), black vulture...Explosive safety-quantity distance (QD) zones are designated areas designed to safeguard the base population and civilian community from potential...explosions. These clear zones include the area within a safety arc surrounding an explosive storage facility. The QD zones at Dover AFB encompass
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Castro-González, Maria Isabel; Maafs-Rodríguez, Ana Gabriela; Pérez-Gil Romo, Fernando
2012-06-01
Because renal disease is highly complex, its nutritional treatment is complicated and many foods are restricted, including fish because its phosphorus content. The aim of the present study was to analyze ten fillet fish species, commonly consumed in Mexico (Cyprinus carpio carpio, Ophichthus rex, Symphurus elongatus, Eucinostomus entomelas, Chirostoma patzcuaro, Bairdiella chrysoura, Salmo salar Oreochromis urolepis hornorum, Sphyraena guachancho, Istiophorus albicans), to determine their phosphorus (P), protein (Pr), cholesterol, sodium, potassium, vitamins D3 and E, and n-3 PUFA (EPA+DHA) according to the AOAC techniques, in order to identify which species could be included in renal diet; particularly because of their risk:benefit relations (calculated with those results). Protein values ranged from 16.5 to 33.5g/100 g of fillet; the specie with the highest phosphorus contest was Salmo salar, and with the lowest, Symphurus elongatus. EPA+DHA quantity ranged from 79.64 mg/100 g to 1,381.53 mg/100 g. Considering de P/Pr relation recommended to renal patients, all analyzed species (except Salmo salar, Ophichthus rex and Istiophorus albicans) could be included in their diet. As for the P/EPA+DHA relation, the species most recommended to renal patients are Symphurus elongatus, Bairdiella chrysoura and Sphyraena guachancho.
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KARAKTERISTIK FISIKA KIMIA BAKSO DARI DAGING LUMAT IKAN LAYARAN (Istiophorus orientalis
Directory of Open Access Journals (Sweden)
Djoko Poernomo
2014-04-01
Full Text Available Daging lumat biasanya digunakan sebagai bahan baku pembuatan surimi, dan produk turunannya sepertibakso ikan. Tujuan penelitian ini adalah untuk mengetahui karakteristik fi sika kimia gel daging lumat dan baksodari daging lumat ikan layaran serta membandingkan bakso hasil penelitian dengan bakso ikan komersial.Penelitian dilakukan dalam dua tahap, yaitu karakterisasi fi sika kimia dan organoleptikgel daging lumat danbaksonya. Gel daging lumat ikan memiliki karakteristik fi sik derajat putih;63,03%, daya ikat air56,44% dankekuatan gel 1469,45 gf. Kadar air 76,13%, abu 2,80%, protein 11,20%, lemak 0,80% dan karbohidrat 9,07%serta protein larut garam sebesar 4,66%, dan organoleptik sebagai berikut: uji lipat 5,uji gigit 7. Sementaraitu, bakso daging lumat ikan layaran memiliki karakteristik yaitu derajat putih, daya ikat air dan kekuatan gelsebesar 67,6%, 56,51% dan 755,65 gf serta uji lipat dan uji gigit yang bernilai 5 dan 7. Kadar air, abu, protein,lemak, karbohidrat, protein larut garam dan pH bernilai 71,18%, 1,39%, 8,37%, 1,19%,17,87%, 3,33% dan 5,82.
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The Evolution of Lateralization in Group Hunting Sailfish
DEFF Research Database (Denmark)
Kurvers, Ralf H J M; Krause, Stefan; Viblanc, Paul E
2017-01-01
Lateralization is widespread throughout the animal kingdom [1–7] and can increase task efficiency via shortening reaction times and saving on neural tissue [8–16]. However, lateralization might be costly because it increases predictability [17–21]. In predator-prey interactions, for example...
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78 FR 1792 - Special Local Regulations, Stuart Sailfish Regatta, Indian River; Stuart, FL
2013-01-09
... comments by mail and would like to know that they reached the Facility, please enclose a stamped, self... area. (C) Traveling in excess of no-wake speed in the spectator area. (2) Persons and vessels may...
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Recent trends in counts of migrant hawks from northeastern North America
Titus, K.; Fuller, M.R.
1990-01-01
Using simple regression, pooled-sites route-regression, and nonparametric rank-trend analyses, we evaluated trends in counts of hawks migrating past 6 eastern hawk lookouts from 1972 to 1987. The indexing variable was the total count for a season. Bald eagle (Haliaeetus leucocephalus), peregrine falcon (Falco peregrinus), merlin (F. columbarius), osprey (Pandion haliaetus), and Cooper's hawk (Accipiter cooperii) counts increased using route-regression and nonparametric methods (P 0.10). We found no consistent trends (P > 0.10) in counts of sharp-shinned hawks (A. striatus), northern goshawks (A. gentilis) red-shouldered hawks (Buteo lineatus), red-tailed hawks (B. jamaicensis), rough-legged hawsk (B. lagopus), and American kestrels (F. sparverius). Broad-winged hawk (B. platypterus) counts declined (P < 0.05) based on the route-regression method. Empirical comparisons of our results with those for well-studied species such as the peregrine falcon, bald eagle, and osprey indicated agreement with nesting surveys. We suggest that counts of migrant hawks are a useful and economical method for detecting long-term trends in species across regions, particularly for species that otherwise cannot be easily surveyed.
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Prevalence of encysted apicomplexans in muscles of raptors.
Lindsay, D S; Blagburn, B L
1999-01-28
An acid-pepsin digestion technique was used to examine portions of breast muscle and heart from raptors for encysted protozoans. Apicomplexan zoites were present in 52 (45.6%) of the 114 samples examined: 11 of 12 (91.7%) red-shouldered hawks (Buteo lineatus), 20 of 34 (58.8%) red-tailed hawks (Buteo jamaicensis), two of seven (28.6%) Cooper's hawks (Accipiter cooperi), three of four (75%) sharp-shinned hawks (Accipiter striatus), one (100%) Mississippi kites (Ictinia misisippiensis), one of two (50%) American kestrels (Falco sparverius), one bald eagle (Haliaeetus leucocephalus), one of two (50%) golden eagles (Aquila chrysaetos), one of three (33%) turkey vultures (Cathartes aura), two of three (66.7%) black vultures (Coragyps atratus), three of six (50%) great-horned owls (Bubo virginianus), five of 15 (33.3%) barred owls (Strix varia), and one of 12 (8.3%) screech owls (Asio otus). Encysted protozoans were not observed in digests of tissues from three broad-winged hawks (Buteo platypterus), four ospreys (Pandion haliaetus), and five barn owls (Tyto alba). Apicomplexan cysts resembling Sarcocystis species were observed in tissue sections of muscles from 28 (37.8%) of 74 raptors.
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Prevalence of encysted Toxoplasma gondii in raptors from Alabama.
Lindsay, D S; Smith, P C; Hoerr, F J; Blagburn, B L
1993-12-01
Little is known about the prevalence of encysted Toxoplasma gondii in wild birds. We examined the hearts and breast muscles from 101 raptors for encysted T. gondii. All of the raptors had been submitted for necropsy to the State Veterinary Diagnostic Laboratory, Auburn, Alabama. Tissues were digested in acid-pepsin solution and inoculated into groups of 3-5 laboratory mice. Toxoplasma gondii was isolated from 27 of 101 (26.7%) raptors: 8 of 12 (66.7%) red-shouldered hawks (Buteo lineatus), 13 of 27 (41.1%) red-tailed hawks (Buteo jamaicensis), 1 of 4 (25%) Cooper's hawks (Accipiter cooperi), 1 of 5 (20%) great horned owls (Bubo virginianus), 4 of 15 (26.7%) barred owls (Strix varia), and 1 of 3 (33.3%) kestrels (Falco sparverius). Toxoplasma gondii was not isolated from 3 broad-winged hawks (Buteo platypterus), 3 sharp-shinned hawks (Accipiter striatus), 6 barn owls (Tyto alba), 9 screech owls (Asio otus), a Mississippi kite (Ictinia misisippiensis), 2 golden eagles (Aquila chrysaetos), a bald eagle (Haliaeetus leucocephalus), 4 ospreys (Pandion haliaetus), 4 turkey vultures (Cathartes aura), or 2 black vultures (Coragyps atratus). No significant difference (P > 0.05) in prevalence was detected based on sex using chi-square analysis. Chi-square analysis of the data demonstrated that adult raptors had encysted stages of T. gondii significantly (P < 0.05) more often than did immature raptors.
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Antibody Prevalence and Isolation of Viable Toxoplasma gondii from Raptors in the Southeastern USA.
Love, David; Kwok, Oliver C; Verma, Shiv Kumar; Dubey, Jitender P; Bellah, Jamie
2016-07-01
Raptors are good indicators of the prevalence of Toxoplasma gondii in the environment because they prey on small mammals and birds. These prey species are a major source of infection in domestic cats ( Felis catus ), which shed the environmentally resistant oocysts. We assessed T. gondii infection in 281 opportunistically available raptors at a rehabilitation facility between 2012 and 2014. Antibodies to T. gondii were assayed by a modified agglutination test (cutoff 1:25) and found in serum of 22/71 Red-tailed Hawks ( Buteo jamaicensis ), 25/54 Barred Owls ( Strix varia ), 9/41 Red-shouldered Hawks ( Buteo lineatus ), 13/28 Great Horned Owls ( Bubo virginianus ), 6/20 Broad-winged Hawks ( Buteo platypterus ), 2/16 Eastern Screech Owls (Megascops asio), 12/13 Bald Eagles ( Haliaeetus leucocephalus ), 6/12 Cooper's Hawks ( Accipiter cooperii ), 1/8 Black Vultures ( Coragyps atratus ), and 1/1 Golden Eagle ( Aquila chrysaetos ). Antibodies were not detected in 5 Barn Owls ( Tyto alba ), 3 American Kestrels ( Falco sparverius ), 1 Mississippi Kite ( Ictinia mississippiensis ), and 1 Osprey ( Pandion haliaetus ). Viable T. gondii was isolated from the tissues of 1 antibody-positive Barred Owl and identified as a strain having type II alleles at all 10 loci tested, except one (ToxoDB polymerase chain reaction-restriction fragment length polymorphism genotype 3). Type II strain is the most common strain in the US. Results of this study indicate a high prevalence of T. gondii in some raptor species and the first reported genotyping from a Barred Owl.
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An optimized protocol for generation and analysis of Ion Proton sequencing reads for RNA-Seq.
Yuan, Yongxian; Xu, Huaiqian; Leung, Ross Ka-Kit
2016-05-26
Previous studies compared running cost, time and other performance measures of popular sequencing platforms. However, comprehensive assessment of library construction and analysis protocols for Proton sequencing platform remains unexplored. Unlike Illumina sequencing platforms, Proton reads are heterogeneous in length and quality. When sequencing data from different platforms are combined, this can result in reads with various read length. Whether the performance of the commonly used software for handling such kind of data is satisfactory is unknown. By using universal human reference RNA as the initial material, RNaseIII and chemical fragmentation methods in library construction showed similar result in gene and junction discovery number and expression level estimated accuracy. In contrast, sequencing quality, read length and the choice of software affected mapping rate to a much larger extent. Unspliced aligner TMAP attained the highest mapping rate (97.27 % to genome, 86.46 % to transcriptome), though 47.83 % of mapped reads were clipped. Long reads could paradoxically reduce mapping in junctions. With reference annotation guide, the mapping rate of TopHat2 significantly increased from 75.79 to 92.09 %, especially for long (>150 bp) reads. Sailfish, a k-mer based gene expression quantifier attained highly consistent results with that of TaqMan array and highest sensitivity. We provided for the first time, the reference statistics of library preparation methods, gene detection and quantification and junction discovery for RNA-Seq by the Ion Proton platform. Chemical fragmentation performed equally well with the enzyme-based one. The optimal Ion Proton sequencing options and analysis software have been evaluated.
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Choi, Haecheon
2009-11-01
Bio-mimetic engineering or bio-mimetics is the application of biological methods and systems found in nature to the study and design of engineering systems and modern technology (from Wikipedia). The concept itself is old, but successful developments have been made recently, especially in the research field of flow control. The objective of flow control based on the bio-mimetic approach is to develop novel concepts for reducing drag, increasing lift and enhancing aerodynamic performance. For skin friction reduction, a few ideas have been suggested such as the riblet from shark, compliant surface from dolphin, microbubble injection and multiple front-body curvature from penguin, and V-shaped protrusion from sailfish. For form drag reduction, several new attempts have been also made recently. Examples include the V-shaped spanwise grooves from saguaro cactus, overall shape of box fish, longitudinal grooves on scallop shell, bill of swordfish, hooked comb on owl wing, trailing-edge protrusion on dragonfly wing, and fillet. For the enhancement of aerodynamic performance, focuses have been made on the birds, fish and insects: e.g., double layered feather of landing bird, leading-edge serration of humpback-whale flipper, pectoral fin of flying fish, long tail on swallowtail-butterfly wing, wing flapping motion of dragonfly, and alula in birds. Living animals adapt their bodies to better performance in multi purposes, but engineering requires single purpose in most cases. Therefore, bio-mimetic approaches often produce excellent results more than expected. However, they are sometimes based on people's wrong understanding of nature and produce unwanted results. Successes and failures from bio-mimetic approaches in flow control will be discussed in the presentation.
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Temporal aggregation of migration counts can improve accuracy and precision of trends
Directory of Open Access Journals (Sweden)
Tara L. Crewe
2016-12-01
Full Text Available Temporal replicate counts are often aggregated to improve model fit by reducing zero-inflation and count variability, and in the case of migration counts collected hourly throughout a migration, allows one to ignore nonindependence. However, aggregation can represent a loss of potentially useful information on the hourly or seasonal distribution of counts, which might impact our ability to estimate reliable trends. We simulated 20-year hourly raptor migration count datasets with known rate of change to test the effect of aggregating hourly counts to daily or annual totals on our ability to recover known trend. We simulated data for three types of species, to test whether results varied with species abundance or migration strategy: a commonly detected species, e.g., Northern Harrier, Circus cyaneus; a rarely detected species, e.g., Peregrine Falcon, Falco peregrinus; and a species typically counted in large aggregations with overdispersed counts, e.g., Broad-winged Hawk, Buteo platypterus. We compared accuracy and precision of estimated trends across species and count types (hourly/daily/annual using hierarchical models that assumed a Poisson, negative binomial (NB or zero-inflated negative binomial (ZINB count distribution. We found little benefit of modeling zero-inflation or of modeling the hourly distribution of migration counts. For the rare species, trends analyzed using daily totals and an NB or ZINB data distribution resulted in a higher probability of detecting an accurate and precise trend. In contrast, trends of the common and overdispersed species benefited from aggregation to annual totals, and for the overdispersed species in particular, trends estimating using annual totals were more precise, and resulted in lower probabilities of estimating a trend (1 in the wrong direction, or (2 with credible intervals that excluded the true trend, as compared with hourly and daily counts.
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Lucena-Frédou, Flávia; Kell, Laurie; Frédou, Thierry; Gaertner, Daniel; Potier, Michel; Bach, Pascal; Travassos, Paulo; Hazin, Fábio; Ménard, Frédéric
2017-06-01
Productivity and Susceptibility Analysis (PSA) is a methodology for evaluating the vulnerability of a stock based on its biological productivity and susceptibility to fishing. In this study, we evaluated the vulnerability of 60 stocks of tuna, billfishes and other teleosts caught by the tuna longline fleets operating in the South Atlantic and Indian Ocean using a semi-quantitative PSA. We (a) evaluated the vulnerability of the species in the study areas; (b) compared the vulnerability of target and non-target species and oceans; (c) analyzed the sensitivity of data entry; and (d) compared the results of the PSA to other fully quantitative assessment methods. Istiophoridae exhibited the highest scores for vulnerability. The top 10 species at risk were: Atlantic Istiophorus albicans; Indian Ocean Istiompax indica; Atlantic Makaira nigricans and Thunnus alalunga; Indian Ocean Xiphias gladius; Atlantic T. albacares, Gempylus serpens, Ranzania laevis and X. gladius; and Indian Ocean T. alalunga. All species considered at high risk were targeted or were commercialized bycatch, except for the Atlantic G. serpens and R. laevis which were discarded, and may be considered as a false positive. Those species and others at high risk should be prioritized for further assessment and/or data collection. Most species at moderate risk were bycatch species kept for sale. Conversely, species classified at low risk were mostly discarded. Overall, species at high risk were overfished and/or subjected to overfishing. Moreover, all species considered to be within extinction risk (Critically Endangered, Endangered and Vulnerable) were in the high-risk category. The good concordance between approaches corroborates the results of our analysis. PSA is not a replacement for traditional stock assessments, where a stock is assessed at regular intervals to provide management advice. It is of importance, however, where there is uncertainty about catches and life history parameters, since it can