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Sample records for robin sequence prs

  1. A comprehensive scoring system in correlation with perioperative airway management for neonatal Pierre Robin Sequence.

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    Ning Yin

    Full Text Available To evaluate a comprehensive scoring system which combines clinical manifestations of Pierre Robin Sequence (PRS including severity of breathing difficulties, body weight and preoperative Cormack-Lehane grade, for its correlation with perioperative PRS airway management decision.Forty PRS children were retrospectively recruited after surgery. Specialists examined all subjects and scored for clinical manifestations (1´ - 4´, weight gain (1´- 4´, dyspnea scores (1´- 4´, and Cormack-Lehane grade (1´- 4´. The correlation of the integrated scores and the necessity of endotracheal intubation or laryngeal mask application were analyzed. In addition, the score correlation with postoperative dyspnea and/or low pulse oxygen saturation (SPO2 levels after extubation was determined.In our study every individual patient had a score from 0´ to 16´, while the higher in the numbers represented higher risk of breathing difficulty. All patients with comprehensive scores 13 points required a laryngeal mask assisted airway management and were considered to have difficult airways. Dyspnea after extubation and postoperative low SPO2 occurred among patients who scored over 10 points.In PRS patients, preoperative weight gaining status and severity of dyspnea in combination with Cormack-Lehane classification provide a scoring system that could help to optimize airway management decisions such as endotracheal intubation or laryngeal mask airway placement and has the potential to predict postoperative dyspnea or low SPO2 levels.

  2. Can telemetry data obviate the need for sleep studies in Pierre Robin Sequence?

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    Aaronson, Nicole Leigh; Jabbour, Noel

    2017-09-01

    This study looks to correlate telemetry data gathered on patients with Pierre Robin Sequence (PRS) with sleep study data. Strong correlation might allow obstructive sleep apnea (OSA) to be reasonably predicted without the need for sleep study. Charts from forty-six infants with PRS who presented to our children's hospital between 2005 and 2015 and received a polysomnogram (PSG) prior to surgical intervention were retrospectively reviewed. Correlations and scatterplots were used to compare average daily oxygen nadir, overall oxygen nadir, and average number of daily desaturations from telemetry data with apnea-hypopnea index (AHI) and oxygen nadir on sleep study. Results were also categorized into groups of AHI ≥ or sleep study data. Patients with O2 nadir below 80% on telemetry were not more likely to have an O2 nadir below 80% on sleep study. Patients with an average O2 nadir below 80% did show some correlation with having an AHI greater than 10 on sleep study but this relationship did not reach significance. Of 22 patients who did not have any desaturations on telemetry below 80%, 16 (73%) had an AHI >10 on sleep study. In the workup of infants with PRS, the index of suspicion is high for OSA. In our series, telemetry data was not useful in ruling out severe OSA. Thus our data do not support forgoing sleep study in patients with PRS and concern for OSA despite normal telemetry patterns. Copyright © 2017 Elsevier B.V. All rights reserved.

  3. Genetics Home Reference: isolated Pierre Robin sequence

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    ... or Free article on PubMed Central Mackay DR. Controversies in the diagnosis and management of the Robin ... Site Map Subscribe Customer Support USA.gov Copyright Privacy Accessibility FOIA Viewers & Players U.S. Department of Health & ...

  4. A Single Lab Test to Aid Pierre Robin Sequence Severity Diagnosis.

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    Fahradyan, Artur; Azadgoli, Beina; Tsuha, Michaela; Urata, Mark M; Francis, Stacey H

    2018-01-01

    The workup of patients with Pierre Robin sequence (PRS) consists of a physical examination, O 2 saturation, and polysomnography to determine the severity of respiratory obstruction and need for surgery. We suggest that capillary blood gas (CBG) may be a better physiologic representation of airway obstruction and should be routinely used in the management of patients with PRS. This is a multicenter study based on a retrospective review of medical records. The study was performed at tertiary care centers. Patients with PRS <1 year old underwent mandibular distraction osteogenesis. Using successful treatment outcome as a reference standard, receiver operating characteristic (ROC) curve was used to determine the accuracy of the diagnostic test and values for the best sensitivity and specificity to determine the need for surgical intervention. Of 73 patients, 48 had sporadic PRS, 23 had syndromes, 2 had micrognathia, not otherwise specified. Mandibular distraction osteogenesis was performed in 62 patients at a mean age of 39 days. The mean initial Apnea-Hypopnea Index (AHI) in nonsurgical versus surgical groups was 10 versus 31 ( P = .063), pH 7.41 versus 7.34 ( P = .003), pCO 2 43 versus 56 ( P < .001), and HCO 3 27 versus 30 ( P = .022). The ROC curve showed that pCO 2 of 49.5 has the best specificity (100%) and sensitivity (72.6%) profile in terms of need for definitive airway. A simple CBG heel stick may better predict the physiologic effects of obstructive apnea; therefore, it should be added to the algorithm of PRS workup.

  5. Seqüência de Robin: protocolo único de tratamento Robin sequence: a single treatment protocol

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    Ilza L. Marques

    2005-02-01

    Full Text Available OBJETIVO: Apresentar protocolo único que possa atender tanto às dificuldades respiratórias como às dificuldades alimentares dos neonatos e lactentes com seqüência de Robin. FONTE DE DADOS: O artigo foi desenvolvido tomando como base as publicações mais recentes disponíveis em bancos de dados bibliográficos e livros que discutem o tratamento da seqüência de Robin, em especial os estudos realizados no Hospital de Reabilitação de Anomalias Craniofaciais da Universidade de São Paulo (HRAC/USP. SÍNTESE DE DADOS: O artigo apresenta os aspectos morfológicos e genéticos da seqüência de Robin e conceitos sobre nasofaringoscopia e suas implicações clínicas, discute o tratamento das dificuldades respiratórias e alimentares e apresenta um protocolo único para atender a todos os casos de seqüência de Robin, independentemente de sua gravidade e complexidade. CONCLUSÕES: A seqüência de Robin não é somente uma patologia obstrutiva anatômica para ser resolvida com procedimentos cirúrgicos, mas os conhecimentos sobre crescimento e desenvolvimento devem ser aplicados por uma equipe multidisciplinar, porque possibilitam a rápida recuperação da permeabilidade das vias aéreas e da capacidade de alimentação oral, evitando-se, muitas vezes, os procedimentos cirúrgicos e seus riscos, principalmente quando realizados em neonatos e lactentes pequenos.OBJECTIVE: To present a single protocol that might cover both the respiratory and feeding difficulties of neonates and infants with Robin sequence. SOURCES OF DATA: The article was prepared on the basis of the most recent publications available in bibliographic databases and in books that discuss the treatment of Robin sequence, especially the studies conducted at the Hospital for Rehabilitation of Craniofacial Anomalies of Universidade de São Paulo (HRAC/USP. SUMMARY OF THE FINDINGS: We present the morphological and genetic aspects of Robin sequence and concepts about

  6. Robin sequence associated with karyotypic mosaicism involving chromosome 22 abnormalities

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    Salinas, C.F.; Jastrzab, J.M.; Centu, E.S. [Medical Univ. of South Carolina, Charleston, SC (United States)

    1994-09-01

    Robin sequence is characterized by cleft palate, hypoplastic mandible, glossoptosis and respiratory difficulties. The Robin sequence may be observed as an isolated defect or as part of about 33 syndromes; however, to our knowledge, it has never been reported associated with chromosome 22 abnormalities. We examined a two-month-old black boy with a severe case of Robin sequence. Exam revealed a small child with hypoplastic mandible, glossoptosis, high palate and respiratory difficulty with continuous apnea episodes resulting in cyanotic lips and nails. In order to relieve the upper airway obstruction, his tongue was attached to the lower lip. Later a tracheostomy was performed. On follow-up exam, this patient was found to have developmental delay. Cytogenetic studies of both peripheral blood and fibroblast cells showed mosaicism involving chromosome 22 abnormalities which were designated as follows: 45,XY,-22/46,XY,-22,+r(22)/46,XY. Fluorescence in situ hybridization (FISH) studies confirmed the identity of the r(22) and showed the presence of the DiGeorge locus (D22575) but the absence of the D22539 locus which maps to 22q13.3. Reported cases of r(22) show no association with Robin sequence. However, r(22) has been associated with flat bridge of the nose, bulbous tip of the nose, epicanthus and high palate, all characteristics that we also observed in this case. These unusual cytogenetic findings may be causally related to the dysmorphology found in the patient we report.

  7. Piezosurgery an Asset in Treatment of Pierre Robin Sequence.

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    Singh, Divya; Gadre, Pushkar; Gadre, Kiran; Ramanojam, Shandilya

    2017-03-01

    Pierre Robin sequence (formerly a syndrome) is named after the French stomatologist who, in 1923 and 1934, described the problems associated with micrognathia in newborn. It comprises mandibular micrognathia, U-shaped cleft palate, and glossoptosis. The typical symptoms are hypoxaemia, noisy breathing, snoring, stridor, cyanosis, bradycardia, feeding difficulties, and failure to thrive. Distraction osteogenesis has recently been considered as a surgical option for early intervention to lengthen the mandible and relieve respiratory problems. Piezosurgery offers a modality to make precise bone cuts preserving vital structures, minimizing the invasiveness of the surgical procedure, and offering bloodless field. We present case of 1-year-old male malnourished child with Pierre Robin sequence and tracheostomy in situ since day 11 of his birth. The staged treatment plan involving mandibular lengthening in which mandibular osteotomies were performed with the piezoelectric scalpel followed by decannulation of tracheostomy, which has been described in detail in this article.

  8. Highly conserved non-coding elements on either side of SOX9 associated with Pierre Robin sequence.

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    Benko, Sabina; Fantes, Judy A; Amiel, Jeanne; Kleinjan, Dirk-Jan; Thomas, Sophie; Ramsay, Jacqueline; Jamshidi, Negar; Essafi, Abdelkader; Heaney, Simon; Gordon, Christopher T; McBride, David; Golzio, Christelle; Fisher, Malcolm; Perry, Paul; Abadie, Véronique; Ayuso, Carmen; Holder-Espinasse, Muriel; Kilpatrick, Nicky; Lees, Melissa M; Picard, Arnaud; Temple, I Karen; Thomas, Paul; Vazquez, Marie-Paule; Vekemans, Michel; Roest Crollius, Hugues; Hastie, Nicholas D; Munnich, Arnold; Etchevers, Heather C; Pelet, Anna; Farlie, Peter G; Fitzpatrick, David R; Lyonnet, Stanislas

    2009-03-01

    Pierre Robin sequence (PRS) is an important subgroup of cleft palate. We report several lines of evidence for the existence of a 17q24 locus underlying PRS, including linkage analysis results, a clustering of translocation breakpoints 1.06-1.23 Mb upstream of SOX9, and microdeletions both approximately 1.5 Mb centromeric and approximately 1.5 Mb telomeric of SOX9. We have also identified a heterozygous point mutation in an evolutionarily conserved region of DNA with in vitro and in vivo features of a developmental enhancer. This enhancer is centromeric to the breakpoint cluster and maps within one of the microdeletion regions. The mutation abrogates the in vitro enhancer function and alters binding of the transcription factor MSX1 as compared to the wild-type sequence. In the developing mouse mandible, the 3-Mb region bounded by the microdeletions shows a regionally specific chromatin decompaction in cells expressing Sox9. Some cases of PRS may thus result from developmental misexpression of SOX9 due to disruption of very-long-range cis-regulatory elements.

  9. A randomized clinical trial of a new orthodontic appliance to improve upper airway obstruction in infants with Pierre Robin sequence.

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    Buchenau, Wolfgang; Urschitz, Michael S; Sautermeister, Judit; Bacher, Margit; Herberts, Tina; Arand, Joerg; Poets, Christian F

    2007-08-01

    To test the hypothesis that a new orthodontic appliance with a velar extension that shifts the tongue anteriorly would reduce upper airway obstruction in infants with Pierre Robin sequence (PRS). Eleven infants with PRS (median age, 3 days) and an apnea index (AI) >3 were studied. The effect of the new appliance on the AI was compared with that of a conventional appliance without a velar extension by using a crossover study design with random allocation. Compared with baseline (mean AI, 13.8), there was a significant decrease in the AI with the new appliance (3.9; P value appliance (14.8; P = .842). Thus, the relative change in AI was -71% (95% CI, -84--49) for the new appliance and +8% (95% CI, -52-142) for the conventional appliance, which was significantly different (P = .004). No severe adverse effects were observed. This new orthodontic appliance appears to be safe and effective in reducing upper airway obstruction in infants with PRS.

  10. Pierre Robin sequence: case report, the relevance of autopsy

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    Cristiano C. Oliveira

    2015-10-01

    Full Text Available ABSTRACTPierre Robin sequence is a neonatal disorder characterized by micrognathism, glossoptosis and cleft palate. We reported an autopsy case of a child whose malformations of the oropharynx were identified only at birth. The child was extremely preterm with severe neonatal depression and poor recovery, and the orofacial alterations prevented the correct treatment. There was facial disorder characterized by micrognathia associated with cleft palate and posterior displacement of the tongue, compressing the vallecula, structurally compatible with glossoptosis. This autopsy surpassed the scientific and epidemiological relevance, allowing the family genetic counseling and close monitoring of a subsequent pregnancy.

  11. Piezosurgery: A new and safe technique for distraction osteogenesis in Pierre Robin sequence review of the literature and case report

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    Galié, Manlio; Candotto, Valentina; Elia, Giovanni; Clauser, Luigi C.

    2014-01-01

    Introduction Pierre Robin sequence (PRS) is characterized by microgenia and retrognathia. Cleft palate and glossoptosis are frequently associated with airway obstruction and difficulty in swallowing. Distraction osteogenesis with micro-distractors has recently been considered as a surgical option during the neonatal age. Case presentation A 6-week-old female with PRS underwent mandibular lengthening in neonatal age. Mandibular osteotomies were performed with the piezoelectric scalpel. Discussion Piezosurgery represents an innovative technique as it offers the maxillofacial surgeon the opportunity to make precise bone cuts without damaging the soft tissue, minimizing the invasiveness of the surgical procedure, and the opportunity of working in a field which is almost totally blood free. Conclusion The use of a piezoelectric device to perform this kind of surgery provides clinical and surgical results which would be difficult with traditional instruments, not only for the patient’s benefit but also for the surgeon’s. Preservation of the original bony structure, especially of the cancellous bone, will benefit the bone healing process due to its high estrogenic potential. PMID:25555147

  12. A LINE-1 Insertion in DLX6 Is Responsible for Cleft Palate and Mandibular Abnormalities in a Canine Model of Pierre Robin Sequence

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    Wolf, Zena T.; Leslie, Elizabeth J.; Arzi, Boaz; Jayashankar, Kartika; Karmi, Nili; Jia, Zhonglin; Rowland, Douglas J.; Young, Amy; Safra, Noa; Sliskovic, Saundra; Murray, Jeffrey C.; Wade, Claire M.; Bannasch, Danika L.

    2014-01-01

    Cleft palate (CP) is one of the most commonly occurring craniofacial birth defects in humans. In order to study cleft palate in a naturally occurring model system, we utilized the Nova Scotia Duck Tolling Retriever (NSDTR) dog breed. Micro-computed tomography analysis of CP NSDTR craniofacial structures revealed that these dogs exhibit defects similar to those observed in a recognizable subgroup of humans with CP: Pierre Robin Sequence (PRS). We refer to this phenotype in NSDTRs as CP1. Individuals with PRS have a triad of birth defects: shortened mandible, posteriorly placed tongue, and cleft palate. A genome-wide association study in 14 CP NSDTRs and 72 unaffected NSDTRs identified a significantly associated region on canine chromosome 14 (24.2 Mb–29.3 Mb; praw = 4.64×10−15). Sequencing of two regional candidate homeobox genes in NSDTRs, distal-less homeobox 5 (DLX5) and distal-less homeobox 6 (DLX6), identified a 2.1 kb LINE-1 insertion within DLX6 in CP1 NSDTRs. The LINE-1 insertion is predicted to insert a premature stop codon within the homeodomain of DLX6. This prompted the sequencing of DLX5 and DLX6 in a human cohort with CP, where a missense mutation within the highly conserved DLX5 homeobox of a patient with PRS was identified. This suggests the involvement of DLX5 in the development of PRS. These results demonstrate the power of the canine animal model as a genetically tractable approach to understanding naturally occurring craniofacial birth defects in humans. PMID:24699068

  13. Growth and prevalence of feeding difficulties in children with Robin sequence : a retrospective cohort study

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    Paes, Emma C.; de Vries, Iris A C; Penris, Wouter M.; Hanny, Karlijn H.; Lavrijsen, Selma W.; van Leerdam, Elselien K.; Rademaker, Maaike M.; Veldhoen, Esther S.; Eijkemans, Rene M J C; Kon, Moshe; Breugem, Corstiaan C.

    Objectives: In addition to breathing problems, patients with Robin sequence (RS) often encounter feeding difficulties (FD). Data regarding the occurrence of FD and possible influencing factors are scarce. The study aim was to elucidate these factors to improve treatment strategies. Material and

  14. Early postnatal development of the mandible in children with isolated cleft palate and children with nonsyndromic Robin sequence

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    Eriksen, J.; Hermann, N.V.; Darvann, Tron Andre

    2006-01-01

    Objective: Analysis of early postnatal mandibular size and growth velocity in children with untreated isolated cleft palate (ICP), nonsyndromic Robin sequence (RS), and a control group of children with unilateral incomplete cleft lip (UICL). Material: 114 children (66 isolated cleft palate, 7 Robin...... and mandibular growth velocity (mm/year) was calculated. Cleft width was measured on the casts at 2 months of age. Results: Mean mandibular length and posterior height were significantly smaller in isolated cleft palate and Robin sequence, compared with unilateral incomplete cleft lip. Mandibular length in Robin...... sequence was also significantly shorter, compared with isolated cleft palate. No significant difference was found between mean mandibular growth velocities in the three groups. No significant correlation was found between mandibular length and cleft width in either isolated cleft palate or Robin sequence...

  15. Variability in a three-generation family with Pierre Robin sequence, acampomelic campomelic dysplasia, and intellectual disability due to a novel ∼1 Mb deletion upstream of SOX9, and including KCNJ2 and KCNJ16.

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    Castori, Marco; Bottillo, Irene; Morlino, Silvia; Barone, Chiara; Cascone, Piero; Grammatico, Paola; Laino, Luigi

    2016-01-01

    Campomelic dysplasia and acampomelic campomelic dysplasia (ACD) are allelic disorders due to heterozygous mutations in or around SOX9. Translocations and deletions involving the SOX9 5' regulatory region are rare causes of these disorders, as well as Pierre Robin sequence (PRS) and 46,XY gonadal dysgenesis. Genotype-phenotype correlations are not straightforward due to the complex epigenetic regulation of SOX9 expression during development. We report a three-generation pedigree with a novel ∼1 Mb deletion upstream of SOX9 and including KCNJ2 and KCNJ16, and ascertained for dominant transmission of PRS. Further characterization of the family identified subtle appendicular anomalies and a variable constellation of axial skeletal features evocative of ACD in several members. Affected males showed learning disability. The identified deletion was smaller than all other chromosome rearrangements associated with ACD. Comparison with other reported translocations and deletions involving this region allowed further refining of genotype-phenotype correlations and an update of the smallest regions of overlap associated with the different phenotypes. Intrafamilial variability in this pedigree suggests a phenotypic continuity between ACD and PRS in patients carrying mutations in the SOX9 5' regulatory region. © 2015 Wiley Periodicals, Inc.

  16. Bioresorbable distraction device for the treatment of airway problems for infants with Robin sequence.

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    Breugem, Corstiaan; Paes, Emma; Kon, Moshe; Mink van der Molen, Aebele B; van der Molen, Aebele B Mink

    2012-08-01

    Pierre Robin sequence is a well known craniofacial entity. There are numerous ways to treat the respiratory insufficiency, but sometimes surgical intervention is needed. Tracheotomy could be associated with morbidity, and distraction osteogenesis has been established as a stable method to obtain a safe airway. Distraction osteogenesis has traditionally been performed with an external device. In this manuscript we describe the feasibility of an internal bioresorbable device. Retrospective descriptive study was performed in a tertiary academic children's hospital. After multidisciplinary team consultation, 12 consecutive patients with Robin sequence were treated with this internal distraction device. The mean age at surgery was 32 days, and the average amount of mandibular distraction was 18 mm. All patients were extubated after an average of 7.5 days after the surgery. The average length of stay in the hospital was 17 days after surgery. There were no major surgical complications. A tracheotomy was prevented in all our patients, and complications were limited. Long-term studies are needed to evaluate the influence that internal distraction has on the growth of the mandible and teeth. The internal distraction system seems safe for infants with micrognathia and has certain benefits when compared to the external distractor.

  17. Bacillus caldolyticus prs gene encoding phosphoribosyldiphosphate synthase

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    Krath, Britta N.; Hove-Jensen, Bjarne

    1996-01-01

    The prs gene, encoding phosphoribosyl-diphosphate (PRPP) synthase, as well as the flanking DNA sequences were cloned and sequenced from the Gram-positive thermophile, Bacillus caldolyticus. Comparison with the homologous sequences from the mesophile, Bacillus subtilis, revealed a gene (gca......D) encoding N-acetylglucosamine-l-phosphate uridyltransferase upstream of prs, and a gene homologous to ctc downstream of prs. cDNA synthesis with a B. caldolyticus gcaD-prs-ctc-specified mRNA as template, followed by amplification utilising the polymerase chain reaction indicated that the three genes are co......-transcribed. Comparison of amino acid sequences revealed a high similarity among PRPP synthases across a wide phylogenetic range. An E. coli strain harbouring the B. caldolyticus prs gene in a multicopy plasmid produced PRPP synthase activity 33-fold over the activity of a haploid B. caldolyticus strain. B. caldolyticus...

  18. Avaliação polissonográfica e de videoendoscopia da deglutição de pacientes portadores da sequência de Pierre-Robin Polysomnography evaluation and swallowing endoscopy of patients with Pierre Robin sequence

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    Carlos Diógenes Pinheiro Neto

    2009-12-01

    Full Text Available Asequência de Pierre Robin é caracterizada por micrognatia, glossoptose e obstrução das vias aéreas superiores. A gravidade dos sintomas é muito variável, o que torna o tratamento destes pacientes um desafio. OBJETIVOS: Identificar a presença de apneia-hipopneia obstrutiva do sono e avaliar a presença de alterações da deglutição em pacientes portadores da sequência de Pierre-Robin. MATERIAL E MÉTODOS: Estudo retrospectivo em que foram avaliadas 14 crianças com sequência de Pierre-Robin, sendo oito do sexo feminino. As crianças foram submetidas à videoendoscopia da deglutição e polissonografia. RESULTADO: Oito pacientes foram incluídos no estudo. Seis apresentaram polissonografia normal e apenas 1 paciente apresentou apneia-hipopneia leve de origem central. A videoendoscopia da deglutição mostrou-se normal em cinco pacientes e disfagia moderada foi detectada em três pacientes sendo submetidos à gastrostomia. A distração da mandíbula foi realizada em quatro pacientes que também foram submetidos à traqueostomia no mesmo tempo cirúrgico. CONCLUSÕES: Disfagia foi mais prevalente do que a apneia do sono. A videoendoscopia da deglutição mostrou ser um exame dinâmico e eficaz na detecção de distúrbios alimentares em pacientes com a sequência de Pierre Robin.The Pierre Robin sequence is characterized by micrognathia, glossoptosis and upper airway obstruction. Symptom severity varies, and this makes the treatment of these patients a true challenge. AIM: to identify the presence of sleep hypopneaapnea in patients with Pierre-Robin sequence. MATERIALS AND METHODS: retrospective study in which we assessed 14 children with Pierre-Robin sequence, eight girls. The children were submitted to swallowing video-endoscopy study and polysomnography. RESULTS: eight patients were included in this study. Six had normal polysomnography and only one patient had mild central hypopnea-apnea. Swallowing video-endoscopy was normal in

  19. Clinical Factors Associated with the Non-Operative Airway Management of Patients with Robin Sequence

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    Frank P. Albino

    2016-11-01

    Full Text Available BackgroundThe indications for surgical airway management in patients with Robin sequence (RS and severe airway obstruction have not been well defined. While certain patients with RS clearly require surgical airway intervention and other patients just as clearly can be managed with conservative measures alone, a significant proportion of patients with RS present with a more confusing and ambiguous clinical course. The purpose of this study was to describe the clinical features and objective findings of patients with RS whose airways were successfully managed without surgical intervention.MethodsThe authors retrospectively reviewed the medical charts of infants with RS evaluated for potential surgical airway management between 1994 and 2014. Patients who were successfully managed without surgical intervention were included. Patient demographics, nutritional and respiratory status, laboratory values, and polysomnography (PSG findings were recorded.ResultsThirty-two infants met the inclusion criteria. The average hospital stay was 16.8 days (range, 5–70 days. Oxygen desaturation (<70% by pulse oximetry occurred in the majority of patients and was managed with temporary oxygen supplementation by nasal cannula (59% or endotracheal intubation (31%. Seventy-five percent of patients required a temporary nasogastric tube for nutritional support, and a gastrostomy tube placed was placed in 9%. All patients continued to gain weight following the implementation of these conservative measures. PSG data (n=26 demonstrated mild to moderate obstruction, a mean apneahypopnea index (AHI of 19.2±5.3 events/hour, and an oxygen saturation level <90% during only 4% of the total sleep time.ConclusionsNonsurgical airway management was successful in patients who demonstrated consistent weight gain and mild to moderate obstruction on PSG, with a mean AHI of <20 events/hour.

  20. Bacillus subtilis PrsA is required in vivo as an extracytoplasmic chaperone for secretion of active enzymes synthesized either with or without pro-sequences

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    Jabobs, Myra F; Andersen, Jens Bo; Kontinen, Vesa P.

    1993-01-01

    In prsA (protein secretion) mutants of Bacillus subtilis, decreased levels of exoproteins, including alpha-amylase and subtilisins, are found extracellularly. The effect of prsA on subtilisin secretion is elaborated here. Extracytoplasmic folding and secretion of active subtilisin is assisted...

  1. Will the right Robin patient rise, please? Definitions and criteria during management of Robin sequence patients in the Netherlands and Belgium.

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    Basart, Hanneke; Kruisinga, Frea H; Breugem, Corstiaan C; Don Griot, J Peter W; Hennekam, Raoul C; Van der Horst, Chantal M A M

    2015-01-01

    Robin Sequence (RS) is characterized by micrognathia and upper airway obstruction (UAO), with or without cleft palate, causing respiratory and feeding problems. Management options are: positioning; nasopharyngeal airway (NPA); tongue-lip adhesion (TLA); mandibular distraction (MDO); and tracheostomy. Controversy exists in literature regarding RS definition and management. Here we describe definitions, management strategies and criteria in opting for management strategies, used by Dutch and Belgian cleft teams. A specifically designed questionnaire was sent to members of all 16 Dutch and Belgian cleft teams. 14 cleft teams returned 35 questionnaires. All used micrognathia as definition criterion, 93.4% cleft palate, 51.5%glossoptosis and 45.7% UAO. Six different RS definitions were used; even within a single team >1 definition was used. All teams used different management strategies: all used positioning, 10 NPA, 6 TLA, 7 MDO, 8 tracheostomy, 5 refer patients with invasive treatment indication. Criteria in opting management modalities were: O2-saturation (89.3%), clinical presentation (86.2%), growth and feeding problems (69.0%), polysomnography (62.1%), and differed within teams. The Dutch and Belgian cleft teams use variable RS definitions, different management modalities and criteria in choosing management strategies. A single, strict definition and evidence-based management guidelines should be formulated for optimal patient care. Copyright © 2014 European Association for Cranio-Maxillo-Facial Surgery. Published by Elsevier Ltd. All rights reserved.

  2. Surgical Management of Pierre Robin Sequence: Using Mandibular Distraction Osteogenesis to Address Hypoventilation and Failure to Thrive in Infancy.

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    Scott, Andrew R

    2016-04-01

    Mandibular hypoplasia may present in isolation or in the context of glossoptosis and a U-shaped, incomplete cleft palate. This latter triad is referred to as Pierre Robin sequence. Deleterious effects of micrognathia that may present during infancy are due primarily to glossoptosis or posterior displacement of the tongue. This tongue base prolapse may cause varying degrees of upper airway obstruction. A surgical option for management of tongue base airway obstruction secondary to mandibular hypoplasia is neonatal mandibular distraction osteogenesis. Herein, the author seeks to outline the benefits and limitations of early mandibular distraction osteogenesis as a way of managing airway obstruction and feeding difficulty in newborns with micrognathia. A description of the author's operative technique as well as potential complications and pitfalls will also be discussed. Thieme Medical Publishers 333 Seventh Avenue, New York, NY 10001, USA.

  3. Microdeletion del(22(q12.2 encompassing the facial development-associated gene, MN1 (meningioma 1 in a child with Pierre-Robin sequence (including cleft palate and neurofibromatosis 2 (NF2: a case report and review of the literature

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    Davidson Tom B

    2012-03-01

    Full Text Available Abstract Background Pierre-Robin sequence (PRS is defined by micro- and/or retrognathia, glossoptosis and cleft soft palate, either caused by deformational defect or part of a malformation syndrome. Neurofibromatosis type 2 (NF2 is an autosomal dominant syndrome caused by mutations in the NF2 gene on chromosome 22q12.2. NF2 is characterized by bilateral vestibular schwannomas, spinal cord schwannomas, meningiomas and ependymomas, and juvenile cataracts. To date, NF2 and PRS have not been described together in the same patient. Case presentation We report a female with PRS (micrognathia, cleft palate, microcephaly, ocular hypertelorism, mental retardation and bilateral hearing loss, who at age 15 was also diagnosed with severe NF2 (bilateral cerebellopontine schwannomas and multiple extramedullary/intradural spine tumors. This is the first published report of an individual with both diagnosed PRS and NF2. High resolution karyotype revealed 46, XX, del(22(q12.1q12.3, FISH confirmed a deletion encompassing NF2, and chromosomal microarray identified a 3,693 kb deletion encompassing multiple genes including NF2 and MN1 (meningioma 1. Five additional patients with craniofacial dysmorphism and deletion in chromosome 22-adjacent-to or containing NF2 were identified in PubMed and the DECIPHER clinical chromosomal database. Their shared chromosomal deletion encompassed MN1, PITPNB and TTC28. MN1, initially cloned from a patient with meningioma, is an oncogene in murine hematopoiesis and participates as a fusion gene (TEL/MN1 in human myeloid leukemias. Interestingly, Mn1-haploinsufficient mice have abnormal skull development and secondary cleft palate. Additionally, Mn1 regulates maturation and function of calvarial osteoblasts and is an upstream regulator of Tbx22, a gene associated with murine and human cleft palate. This suggests that deletion of MN1 in the six patients we describe may be causally linked to their cleft palates and/or craniofacial

  4. A pragmatic approach to infants with Robin sequence: a retrospective cohort study and presence of a treatment algorithm.

    Science.gov (United States)

    Paes, Emma C; van Nunen, Daan P F; Speleman, Lucienne; Muradin, Marvick S M; Smarius, Bram; Kon, Moshe; Mink van der Molen, Aebele B; van der Molen, Aebele B Mink; Niers, Titia L E M; Veldhoen, Esther S; Breugem, Corstiaan C

    2015-11-01

    Initial approaches to and treatments of infants with Robin sequence (RS) is diverse and inconsistent. The care of these sometimes critically ill infants involves many different medical specialties, which can make the decision process complex and difficult. To optimize the care of infants with RS, we present our institution's approach and a review of the current literature. A retrospective cohort study was conducted among 75 infants diagnosed with RS and managed at our institution in the 1996-2012 period. Additionally, the conducted treatment regimen in this paper was discussed with recent literature describing the approach of infants with RS. Forty-four infants (59%) were found to have been treated conservatively. A significant larger proportion of nonisolated RS infants than isolated RS infants needed surgical intervention (53 vs. 25%, p = .014). A mandibular distraction was conducted in 24% (n = 18) of cases, a tracheotomy in 9% (n = 7), and a tongue-lip adhesion in 8% (n = 6). Seventy-seven percent of all infants had received temporary nasogastric tube feeding. The literature review of 31 studies showed that initial examinations and the indications to perform a surgical intervention varied and were often not clearly described. RS is a heterogenic group with a wide spectrum of associated anomalies. As a result, the decisional process is challenging, and a multidisciplinary approach to treatment is desirable. Current treatment options in literature vary, and a more uniform approach is recommended. We provide a comprehensive and pragmatic approach to the analysis and treatment of infants with RS, which could serve as useful guidance in other clinics.

  5. Características acústicas da oclusiva glotal associada à sequência de Pierre Robin: estudo de caso Acoustic characteristics of glottal stop associated to Pierre Robin Sequence: case study

    Directory of Open Access Journals (Sweden)

    Viviane Cristina de Castro Marino

    2013-04-01

    Full Text Available A fissura de palato, em associação à Sequência de Pierre Robin, pode favorecer o desenvolvimento de produções atípicas (compensatórias, na fala da criança, como é o caso da oclusiva glotal (golpe de glote comumente observada em substituição aos sons oclusivos (vozeados ou não. No presente estudo, foi realizada a análise dos parâmetros fonético-acústicos da oclusiva glotal produzidas em /k/ e /g/ por uma criança do gênero feminino, com 5 anos, que apresentava fissura de palato reparada, associada à Sequência de Pierre Robin. Para isso, foram selecionadas seis palavras em que a oclusiva velar encontrava-se na posição inicial da palavra e combinada com as vogais /a/, /i/ e /u/ na posição acentuada. Foi ainda realizado julgamento perceptivo-auditivo por três fonoaudiólogos, que apresentou concordância quanto à presença da oclusiva glotal de 100% para ambas as relações (intra e inter-juízes. Na inspeção dos dados via espectrograma foi observada variabilidade dos parâmetros espectrais (burst e transição formântica e essas variações também puderam ser computadas considerando as vogais separadamente. A análise estatística revelou diferença estatisticamente significante entre as duas consoantes velares (/k/ e /g/ nos parâmetros espectral (burst, temporal (VOT e duração relativa da oclusiva na palavra e os relativos às características acústicas das vogais adjacentes às oclusivas (período estacionário de F3. Por fim, as características acústicas da oclusiva glotal sugeriram que a criança pode ter utilizado de estratégias para marcar contrastes fônicos na língua, ainda que os mesmos não tenham magnitude suficiente para serem resgatados auditivamente pelo ouvinte.The cleft palate, in association with Pierre Robin Sequence, may foster the development of atypical (compensatory productions on the child’s speech such as the use of glottal stop as a substitution for occlusive sounds (voiced or

  6. Características acústicas da oclusiva glotal associada à sequência de Pierre Robin: estudo de caso Acoustic characteristics of glottal stop associated to Pierre Robin Sequence: case study

    Directory of Open Access Journals (Sweden)

    Viviane Cristina de Castro Marino

    2012-01-01

    Full Text Available A fissura de palato, em associação à Sequência de Pierre Robin, pode favorecer o desenvolvimento de produções atípicas (compensatórias, na fala da criança, como é o caso da oclusiva glotal (golpe de glote comumente observada em substituição aos sons oclusivos (vozeados ou não. No presente estudo, foi realizada a análise dos parâmetros fonético-acústicos da oclusiva glotal produzidas em /k/ e /g/ por uma criança do gênero feminino, com 5 anos, que apresentava fissura de palato reparada, associada à Sequência de Pierre Robin. Para isso, foram selecionadas seis palavras em que a oclusiva velar encontrava-se na posição inicial da palavra e combinada com as vogais /a/, /i/ e /u/ na posição acentuada. Foi ainda realizado julgamento perceptivo-auditivo por três fonoaudiólogos, que apresentou concordância quanto à presença da oclusiva glotal de 100% para ambas as relações (intra e inter-juízes. Na inspeção dos dados via espectrograma foi observada variabilidade dos parâmetros espectrais (burst e transição formântica e essas variações também puderam ser computadas considerando as vogais separadamente. A análise estatística revelou diferença estatisticamente significante entre as duas consoantes velares (/k/ e /g/ nos parâmetros espectral (burst, temporal (VOT e duração relativa da oclusiva na palavra e os relativos às características acústicas das vogais adjacentes às oclusivas (período estacionário de F3. Por fim, as características acústicas da oclusiva glotal sugeriram que a criança pode ter utilizado de estratégias para marcar contrastes fônicos na língua, ainda que os mesmos não tenham magnitude suficiente para serem resgatados auditivamente pelo ouvinte.The cleft palate, in association with Pierre Robin Sequence, may foster the development of atypical (compensatory productions on the child’s speech such as the use of glottal stop as a substitution for occlusive sounds (voiced or

  7. PRS and POS/PRS coupling experiments on Hawk

    Energy Technology Data Exchange (ETDEWEB)

    Peterson, G G; Apruzese, J P; Commisso, R J [Naval Research Laboratory, Washington, DC (United States). Plasma Physics Div.; and others

    1997-12-31

    Experiments are being conducted on Hawk to investigate the electrical coupling of a plasma opening switch (POS) to a neon plasma radiation source (PRS) and to evaluate the K SHELL x-ray yield scaling of implosions with different initial radii, mass, and implosion times. Understanding the coupling and scaling is important for optimizing the performance of more powerful inductive-storage generators that rely on POS technology. (author). 1 tab., 5 figs., 7 refs.

  8. Phosphoribosylpyrophosphate synthetase of Bacillus subtilis. Cloning, characterization and chromosomal mapping of the prs gene

    DEFF Research Database (Denmark)

    Nilsson, Dan; Hove-Jensen, Bjarne

    1987-01-01

    The gene (prs) encoding phosphoribosylpyrophosphate (PRPP) synthetase has been cloned from a library of Bacillus subtilis DNA by complementation of an Escherichia coli prs mutation. Flanking DNA sequences were pruned away by restriction endonuclease and exonuclease BAL 31 digestions, resulting...... in a DNA fragment of approx. 1.8 kb complementing the E. coli prs mutation. Minicell experiments revealed that this DNA fragment coded for a polypeptide, shown to be the PRPP synthetase subunit, with an Mr of approx. 40,000. B. subtilis strains harbouring the prs gene in a multicopy plasmid contained up...... to nine-fold increased PRPP synthetase activity. The prs gene was cloned in an integration vector and the resulting hybrid plasmid inserted into the B. subtilis chromosome by homologous recombination. The integration site was mapped by transduction and the gene order established as purA-guaA-prs-cysA....

  9. Primary structure of the tms and prs genes of Bacillus subtilis

    DEFF Research Database (Denmark)

    Nilsson, Dan; Hove-Jensen, Bjarne; Arnvig, Kirsten

    1989-01-01

    The nucleotide sequence was determined of a 3211 nucleotide pair EcoRI-PvuII DNA fragment containing the tms and prs genes as well as a part of the ctc gene of Bacillus subtilis. The prs gene encodes phosphoribosylpyrophosphate (PRPP) synthetase, whereas the functioning of the tms and ctc gene...... products remains to be established. The prs gene contains an open reading frame of 317 codons resulting in a subunit Mr of 34828. An open reading frame comprising the tms gene contained 456 codons resulting in a putative translation product with an Mr of 49,554. Comparison of the deduced B. subtilis PRPP...

  10. Wild-type phosphoribosylpyrophosphate synthase (PRS from Mycobacterium tuberculosis: a bacterial class II PRS?

    Directory of Open Access Journals (Sweden)

    Ardala Breda

    Full Text Available The 5-phospho-α-D-ribose 1-diphosphate (PRPP metabolite plays essential roles in several biosynthetic pathways, including histidine, tryptophan, nucleotides, and, in mycobacteria, cell wall precursors. PRPP is synthesized from α-D-ribose 5-phosphate (R5P and ATP by the Mycobacterium tuberculosis prsA gene product, phosphoribosylpyrophosphate synthase (MtPRS. Here, we report amplification, cloning, expression and purification of wild-type MtPRS. Glutaraldehyde cross-linking results suggest that MtPRS predominates as a hexamer, presenting varied oligomeric states due to distinct ligand binding. MtPRS activity measurements were carried out by a novel coupled continuous spectrophotometric assay. MtPRS enzyme activity could be detected in the absence of P(i. ADP, GDP and UMP inhibit MtPRS activity. Steady-state kinetics results indicate that MtPRS has broad substrate specificity, being able to accept ATP, GTP, CTP, and UTP as diphosphoryl group donors. Fluorescence spectroscopy data suggest that the enzyme mechanism for purine diphosphoryl donors follows a random order of substrate addition, and for pyrimidine diphosphoryl donors follows an ordered mechanism of substrate addition in which R5P binds first to free enzyme. An ordered mechanism for product dissociation is followed by MtPRS, in which PRPP is the first product to be released followed by the nucleoside monophosphate products to yield free enzyme for the next round of catalysis. The broad specificity for diphosphoryl group donors and detection of enzyme activity in the absence of P(i would suggest that MtPRS belongs to Class II PRS proteins. On the other hand, the hexameric quaternary structure and allosteric ADP inhibition would place MtPRS in Class I PRSs. Further data are needed to classify MtPRS as belonging to a particular family of PRS proteins. The data here presented should help augment our understanding of MtPRS mode of action. Current efforts are toward experimental structure

  11. Wild-Type Phosphoribosylpyrophosphate Synthase (PRS) from Mycobacterium tuberculosis: A Bacterial Class II PRS?

    Science.gov (United States)

    Breda, Ardala; Martinelli, Leonardo K. B.; Bizarro, Cristiano V.; Rosado, Leonardo A.; Borges, Caroline B.; Santos, Diógenes S.; Basso, Luiz A.

    2012-01-01

    The 5-phospho-α-D-ribose 1-diphosphate (PRPP) metabolite plays essential roles in several biosynthetic pathways, including histidine, tryptophan, nucleotides, and, in mycobacteria, cell wall precursors. PRPP is synthesized from α-D-ribose 5-phosphate (R5P) and ATP by the Mycobacterium tuberculosis prsA gene product, phosphoribosylpyrophosphate synthase (MtPRS). Here, we report amplification, cloning, expression and purification of wild-type MtPRS. Glutaraldehyde cross-linking results suggest that MtPRS predominates as a hexamer, presenting varied oligomeric states due to distinct ligand binding. MtPRS activity measurements were carried out by a novel coupled continuous spectrophotometric assay. MtPRS enzyme activity could be detected in the absence of Pi. ADP, GDP and UMP inhibit MtPRS activity. Steady-state kinetics results indicate that MtPRS has broad substrate specificity, being able to accept ATP, GTP, CTP, and UTP as diphosphoryl group donors. Fluorescence spectroscopy data suggest that the enzyme mechanism for purine diphosphoryl donors follows a random order of substrate addition, and for pyrimidine diphosphoryl donors follows an ordered mechanism of substrate addition in which R5P binds first to free enzyme. An ordered mechanism for product dissociation is followed by MtPRS, in which PRPP is the first product to be released followed by the nucleoside monophosphate products to yield free enzyme for the next round of catalysis. The broad specificity for diphosphoryl group donors and detection of enzyme activity in the absence of Pi would suggest that MtPRS belongs to Class II PRS proteins. On the other hand, the hexameric quaternary structure and allosteric ADP inhibition would place MtPRS in Class I PRSs. Further data are needed to classify MtPRS as belonging to a particular family of PRS proteins. The data here presented should help augment our understanding of MtPRS mode of action. Current efforts are toward experimental structure determination of MtPRS

  12. Plutonium Round Robin Test

    International Nuclear Information System (INIS)

    Dudder, G.B.; Herbillon, G.H.

    2001-01-01

    Full text: The goal of nuclear forensics is to develop a preferred approach to illicit trafficking investigations. This approach must be widely understood and acceptable as credible. The principle objectives of the Round Robin Test are to prioritize the forensic techniques and methods, evaluate attribution capabilities, and examine the utility of database. The Plutonium Round Robin has made a tremendous contribution to fulfilling these goals through a collaborative learning experience that resulted from the outstanding efforts of the six participating international laboratories. A prioritize list of techniques and methods has been developed based on this exercise. Future work will focus on a Highly Enriched Round Robin and extent to which the techniques and methods can be generalized. The Plutonium Round Robin demonstrated a rather high level of capability to determine the important characteristics of the materials and processes using analytical methods. When this capability to was combined with the appropriate knowledge and database, it resulted in a demonstrated capability to attribute the source of the materials to a specific nuclear fuel, reactor, and reprocessing facility. A number of shortfalls were also identified in our current capabilities. These included alternative dating techniques. Light Water Reactor discrimination techniques, and the lack of a comprehensive network of data/knowledge bases. The result of the Round Robin will be used to develop guidelines or a 'recommended protocol' to be made available to the interested authorities and countries to use in real cases. The poster will present a summary of the results of the Plutonium Round Robin and describe the plans the subsequent Highly Enriched Uranium Round Robin Test. (author)

  13. A de novo 1.58 Mb deletion, including MAP2K6 and mapping 1.28 Mb upstream to SOX9, identified in a patient with Pierre Robin sequence and osteopenia with multiple fractures.

    Science.gov (United States)

    Smyk, Marta; Roeder, Elizabeth; Cheung, Sau Wai; Szafranski, Przemyslaw; Stankiewicz, Paweł

    2015-08-01

    Defects of long-range regulatory elements of dosage-sensitive genes represent an under-recognized mechanism underlying genetic diseases. Haploinsufficiency of SOX9, the gene essential for development of testes and differentiation of chondrocytes, results in campomelic dysplasia, a skeletal malformation syndrome often associated with sex reversal. Chromosomal rearrangements with breakpoints mapping up to 1.6 Mb up- and downstream to SOX9, and disrupting its distant cis-regulatory elements, have been described in patients with milder forms of campomelic dysplasia, Pierre Robin sequence, and sex reversal. We present an ∼1.58 Mb deletion mapping ∼1.28 Mb upstream to SOX9 that encompasses its putative long-range cis-regulatory element(s) and MAP2K6 in a patient with Pierre Robin sequence and osteopenia with multiple fractures. Low bone mass panel testing using massively parallel sequencing of 23 nuclear genes, including COL1A1 and COL1A2 was negative. Based on the previous mouse model of Map2k6, suggesting that Sox9 is likely a downstream target of the p38 MAPK pathway, and our previous chromosome conformation capture-on-chip (4C) data showing potential interactions between SOX9 promoter and MAP2K6, we hypothesize that deletion of MAP2K6 might have affected SOX9 expression and contributed to our patient's phenotype. © 2015 Wiley Periodicals, Inc.

  14. ROBINS-I

    DEFF Research Database (Denmark)

    Sterne, Jonathan A C; Hernan, M. A.; Reeves, B. C.

    2016-01-01

    Non-randomised studies of the effects of interventions are critical to many areas of healthcare evaluation, but their results may be biased. It is therefore important to understand and appraise their strengths and weaknesses. We developed ROBINS-I ("Risk Of Bias In Non-randomised Studies - of Int...

  15. Juhtimisguru Robin Sharma naudib vaikusehetki / Robin Sharma ; interv. Kristo Kiviorg

    Index Scriptorium Estoniae

    Sharma, Robin

    2008-01-01

    Ilmunud ka: Delovõje Vedomosti 5. märts lk. 12. Juhtimisguru Robin Sharma leiab, et inimesed peaksid leidma päevas tunni iseenese jaoks, sest see aitab leida õiged perspektiivid ning loob eelduse heade ideede tekkeks. Lisa: Robin S. Sharma. Kommenteerivad Kadri Arula ja Asko Talu

  16. Robin Sharma : juhtimine on lihtne / Robin Sharma ; intervjueerinud Nelli Pello

    Index Scriptorium Estoniae

    Sharma, Robin

    2008-01-01

    Eestit külastanud maailma tunnustatumaid koolitajaid Robin Sharma, kes viis läbi seminari "Eestvedamise meistriklass", vastab küsimustele Eesti-muljete ja juhtimise kohta. Lisa: Robin Sharma mõtteteri. Kommenteerivad: Indrek Pertelson, Anne Samlik

  17. Piping inspection round robin

    International Nuclear Information System (INIS)

    Heasler, P.G.; Doctor, S.R.

    1996-04-01

    The piping inspection round robin was conducted in 1981 at the Pacific Northwest National Laboratory (PNNL) to quantify the capability of ultrasonics for inservice inspection and to address some aspects of reliability for this type of nondestructive evaluation (NDE). The round robin measured the crack detection capabilities of seven field inspection teams who employed procedures that met or exceeded the 1977 edition through the 1978 addenda of the American Society of Mechanical Engineers (ASME) Section 11 Code requirements. Three different types of materials were employed in the study (cast stainless steel, clad ferritic, and wrought stainless steel), and two different types of flaws were implanted into the specimens (intergranular stress corrosion cracks (IGSCCs) and thermal fatigue cracks (TFCs)). When considering near-side inspection, far-side inspection, and false call rate, the overall performance was found to be best in clad ferritic, less effective in wrought stainless steel and the worst in cast stainless steel. Depth sizing performance showed little correlation with the true crack depths

  18. Anomalia Pierre Robin: cuidados

    Directory of Open Access Journals (Sweden)

    Maria Irene Bachega

    1985-12-01

    Full Text Available A anomalia de Pierre Robin, ocupa papel relevante nas ações de saúde do Hospital de Pesquisa e Reabilitação de Lesões Lábio-Palatais (HPRLLP, pelas suas características peculiares (micrognatia, glossoptose, palato hiperarqueado ou fissurado, língua ocupando posição retraída, ocasionando cianose, tiragem, opistotomo e pneumonias de aspiração, exigindo, portanto, cuidados médicos e de enfermagem específicos. Dentre as malformações associadas a fissura lábio-palatal, a anomalia de Pierre Robin é a que apresenta maior freqüência, exigindo maiores cuidados, daí a importância de podermos relatar a Pesquisa realizada em nosso serviço, fornecendo aos profissionais de saúde, subsídios para que possam delinear uma abordagem eficaz, orientando os cuidados referentes ao posicionamento da criança, técnica de alimentação, e assistência pré e pós-operatória.

  19. data sets Simulations in articulating light-weight PRS

    NARCIS (Netherlands)

    Van den Berg, Bert

    2008-01-01

    The data sets are output of 3 different steps in the development a simulations of a PRS as described in chapter 3.3: Simulations in articulating light-weight PRS A case for Pedagogy-oriented and Rating-based Hybrid Recommendation Strategies Rob Nadolski, Bert van den Berg, Adriana Berlanga, Hans

  20. Phosphoribosylpyrophosphate synthetase of Escherichia coli. Properties of the purified enzyme and primary structure of the prs gene

    DEFF Research Database (Denmark)

    Hove-Jensen, Bjarne; Harlow, Kenneth W.; King, Cheryl J.

    1986-01-01

    of ADP. The nucleotide sequence of the E. coli prs gene has been determined and the coding segment established. The deduced amino acid sequence of P-Rib-PP synthetase contained 314 amino acid residues and the molecular weight was calculated as 34,060. The initiation site of transcription was determined......Phosphoribosylpyrophosphate (P-Rib-PP) synthetase of Escherichia coli has been purified to near homogeneity from a strain harboring the prs gene, encoding P-Rib-PP synthetase, on a multicopy plasmid. Analysis of the enzyme showed that it required inorganic phosphate for activity and for stability...

  1. "Ameeriklane" Robin Hood / Timo Diener

    Index Scriptorium Estoniae

    Diener, Timo

    2005-01-01

    Mängufilmi "Robin Hood : varaste prints" võtetest. Režissöör Kevin Reynolds, peaosas Kevin Costner, USA 1991. Järg: Teleleht nr. 14, 11. aprill 2005, lk. 38 : ill ja Teleleht nr. 15, 18. aprill 2005, lk. 38 : ill

  2. Round robin scheduling - a survey

    DEFF Research Database (Denmark)

    Rasmussen, Rasmus Vinther; Trick, Michael A.

    2008-01-01

    This paper presents a comprehensive survey on the literature considering round robin tournaments. The terminology used within the area has been modified over time and today it is highly inconsistent. By presenting a coherent explanation of the various notions we hope that this paper will help to ...

  3. Management of nuclear PRs activity with optimal conditions

    International Nuclear Information System (INIS)

    Ohnishi, Teruaki

    1997-01-01

    A methodology is proposed to derive optimal conditions for the activity of nuclear public relations (PRs). With the use of data-bases available at present, expressions were derived which connect the budget allocated for the PRs activity with the intensity of stimulus for four types of activity of the advertisement in the press, the exclusive publicity, the pamphlet and the advertisement on television. Optimal conditions for the activity were determined by introducing a model describing a relation between the intensity of stimulus and the extent of the change of public's attitude to nuclear energy, namely the effect of PRs activity, and also by giving the optimal ratio of allocation of the budget among the four types of activity as a function of cost versus effectiveness of each type. Those optimal conditions, being for the ratio of allocation of the budget, the execution time and the intensity of each type of activity at that time, vary depending on the number of household in a target region, the target class of demography, the duration time of activity, and the amount of budget for the activity. It becomes clear from numerical calculation that the optimal conditions and the effect of activity show quite strong non-linearity with respect to the variation of those variables, and that the effect of PRs activity averaged over all public in the target region becomes to be maximum, in Japan, when the activity is executed with the optimal conditions determined for the target class of middle- and advanced-aged women. The management of nuclear PRs activity becomes possible by introducing such a method of fixation of optimal conditions for the activity as described here. (author)

  4. Percutaneous dilational tracheotomy for airway management in a newborn with Pierre-Robin syndrome and a glossopharyngeal web.

    Science.gov (United States)

    Pirat, Arash; Candan, Selim; Unlükaplan, Aytekin; Kömürcü, Ozgür; Kuşlu, Selim; Arslan, Gülnaz

    2012-04-01

    Pierre-Robin syndrome (PRS) is often associated with difficulty in endotracheal intubation. We present the use of percutaneous dilational tracheotomy (PDT) for airway management of a newborn with PRS and a glossopharyngeal web. A 2-day-old term newborn with PRS and severe obstructive dyspnea was evaluated by the anesthesiology team for airway management. A direct laryngoscopy revealed a glossopharyngeal web extending from the base of the tongue to the posterior pharyngeal wall. The infant was spontaneously breathing through a 2 mm diameter fistula in the center of this web. It was decided that endotracheal intubation was impossible, and a PDT was planned. The trachea of the newborn was cannulated, using a 20 gauge peripheral venous catheter and a 0.71 mm guide wire was introduced through this catheter. Using 5 French, 7 French, 9 French, and 11 French central venous catheter kit dilators, staged tracheotomy stoma dilation was performed. By inserting a size 3.0 tracheotomy cannula, PDT was successfully completed in this newborn. This case describes the successful use of PDT for emergency airway management of a newborn with PRS and glossopharyngeal web.

  5. Kinematic Analysis and Performance Evaluation of Novel PRS Parallel Mechanism

    Science.gov (United States)

    Balaji, K.; Khan, B. Shahul Hamid

    2018-02-01

    In this paper, a 3 DoF (Degree of Freedom) novel PRS (Prismatic-Revolute- Spherical) type parallel mechanisms has been designed and presented. The combination of striaght and arc type linkages for 3 DOF parallel mechanism is introduced for the first time. The performances of the mechanisms are evaluated based on the indices such as Minimum Singular Value (MSV), Condition Number (CN), Local Conditioning Index (LCI), Kinematic Configuration Index (KCI) and Global Conditioning Index (GCI). The overall reachable workspace of all mechanisms are presented. The kinematic measure, dexterity measure and workspace analysis for all the mechanism have been evaluated and compared.

  6. A TXRF round robin study

    International Nuclear Information System (INIS)

    Roberts, R.F.; Holmes, R.J.; Florimonte, M.C. De

    2000-01-01

    Total reflection x-ray fluorescence spectroscopy (TXRF) is used extensively to measure the quantity of ultra trace metal contamination on wafer surfaces for manufacture monitoring, tool and material qualification and process development in the semiconductor industry. It has been noted, however, that issues with TXRF instrument calibration using reference wafers may lead to difficulty in comparison of TXRF areal density results from different laboratories. In order to cross-calibrate TXRF instruments within Lucent Technologies, a set of reference wafers was produced and characterized. The reference wafers were then measured, in round robin fashion, on various TXRF instruments, internal and external to Lucent Technologies, and the results compared. The results will be discussed as well as implications for instances where TXRF data from different facilities must be compared in a meaningful manner. (author)

  7. Robin Cook tundis Eestis kodusoojust / Kaarel Kaas

    Index Scriptorium Estoniae

    Kaas, Kaarel, 1978-

    1999-01-01

    Suurbritannia välisministri Robin Cooki visiit kulmineerus uue saatkonna ametliku avamisega. Kommentaar kahe riigi suhetest : A. Tarand, S. Lõoke, A. Laaneots, G. Aarma. Lisa : Välisriikide ametnike visiidid Eestisse 1996-1999

  8. File list: Oth.Prs.50.Epitope_tags.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.50.Epitope_tags.AllCell hg19 TFs and others Epitope tags Prostate SRX084527...,SRX084528,SRX084524 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.50.Epitope_tags.AllCell.bed ...

  9. File list: Oth.Prs.20.Epitope_tags.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.20.Epitope_tags.AllCell hg19 TFs and others Epitope tags Prostate SRX084527...,SRX084528,SRX084524 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.20.Epitope_tags.AllCell.bed ...

  10. File list: ALL.Prs.05.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.05.AllAg.Prostate_cancer_cells hg19 All antigens Prostate Prostate cancer c...ells SRX022582,SRX022577,SRX022578,SRX022581,SRX022579,SRX022580 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/ALL.Prs.05.AllAg.Prostate_cancer_cells.bed ...

  11. File list: ALL.Prs.50.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.50.AllAg.Prostate_cancer_cells hg19 All antigens Prostate Prostate cancer c...ells SRX022579,SRX022582,SRX022581,SRX022577,SRX022580,SRX022578 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/ALL.Prs.50.AllAg.Prostate_cancer_cells.bed ...

  12. File list: DNS.Prs.10.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available DNS.Prs.10.AllAg.Prostate_cancer_cells hg19 DNase-seq Prostate Prostate cancer cell...s http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/DNS.Prs.10.AllAg.Prostate_cancer_cells.bed ...

  13. File list: Oth.Prs.05.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.05.AllAg.Prostate_cancer_cells hg19 TFs and others Prostate Prostate cancer... cells SRX022577,SRX022578 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.05.AllAg.Prostate_cancer_cells.bed ...

  14. File list: InP.Prs.05.Input_control.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.05.Input_control.AllCell hg19 Input control Input control Prostate SRX08452...RX882951,SRX334229,SRX047085,SRX248897,SRX315154,SRX315157,SRX120297,SRX540851 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/InP.Prs.05.Input_control.AllCell.bed ...

  15. File list: InP.Prs.05.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.05.AllAg.Prostate mm9 Input control Prostate Prostate SRX283738,SRX283748,S...RX283743,SRX286393,SRX283753,SRX286392,SRX286391,SRX467339,SRX385390 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/InP.Prs.05.AllAg.Prostate.bed ...

  16. File list: Oth.Prs.10.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.10.AllAg.Prostate mm9 TFs and others Prostate Prostate SRX283740,SRX283739,...187,SRX385391,SRX385392,SRX286389 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Prs.10.AllAg.Prostate.bed ...

  17. File list: ALL.Prs.20.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.20.AllAg.Prostate hg19 All antigens Prostate Prostate SRX481466,SRX481465,S...RX481464,SRX502061,SRX502056,SRX502064,SRX502054,SRX502058,SRX502060,SRX502068 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/ALL.Prs.20.AllAg.Prostate.bed ...

  18. File list: Oth.Prs.20.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.20.AllAg.Prostate mm9 TFs and others Prostate Prostate SRX283734,SRX121185,...389,SRX385392,SRX286380,SRX121187 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Prs.20.AllAg.Prostate.bed ...

  19. File list: His.Prs.05.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available His.Prs.05.AllAg.Prostate mm9 Histone Prostate Prostate SRX283737,SRX283742,SRX2837...41,SRX283747,SRX283752,SRX283736,SRX373258,SRX283751,SRX283746,SRX373259 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/His.Prs.05.AllAg.Prostate.bed ...

  20. File list: InP.Prs.20.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.20.AllAg.Prostate mm9 Input control Prostate Prostate SRX286393,SRX286391,S...RX286392,SRX385390,SRX283753,SRX283743,SRX283738,SRX283748,SRX467339 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/InP.Prs.20.AllAg.Prostate.bed ...

  1. File list: Oth.Prs.10.AllAg.Prostate_cancer [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.10.AllAg.Prostate_cancer hg19 TFs and others Prostate Prostate cancer SRX50...X502065,SRX502059,SRX502055 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.10.AllAg.Prostate_cancer.bed ...

  2. File list: Pol.Prs.10.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.10.AllAg.Prostate_cancer_cells hg19 RNA polymerase Prostate Prostate cancer... cells SRX022582 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Prs.10.AllAg.Prostate_cancer_cells.bed ...

  3. File list: ALL.Prs.10.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.10.AllAg.Prostate mm9 All antigens Prostate Prostate SRX283738,SRX283740,SR...90,SRX286392,SRX283753,SRX283748 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/ALL.Prs.10.AllAg.Prostate.bed ...

  4. File list: Oth.Prs.05.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.05.AllAg.Prostate mm9 TFs and others Prostate Prostate SRX283740,SRX283739,...745,SRX286381,SRX286380,SRX286389 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Prs.05.AllAg.Prostate.bed ...

  5. File list: Oth.Prs.05.AllAg.Prostate_cancer [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.05.AllAg.Prostate_cancer hg19 TFs and others Prostate Prostate cancer SRX50...X502065,SRX502055,SRX502069 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.05.AllAg.Prostate_cancer.bed ...

  6. File list: Oth.Prs.20.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.20.AllAg.Prostate hg19 TFs and others Prostate Prostate SRX481466,SRX502061...,SRX502056,SRX502064,SRX502054,SRX502058,SRX502060,SRX502068 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.20.AllAg.Prostate.bed ...

  7. File list: Oth.Prs.10.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.10.AllAg.Prostate hg19 TFs and others Prostate Prostate SRX502061,SRX481466...,SRX502060,SRX502068,SRX502064,SRX502054,SRX502056,SRX502058 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.10.AllAg.Prostate.bed ...

  8. File list: Oth.Prs.50.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.50.AllAg.Prostate hg19 TFs and others Prostate Prostate SRX502064,SRX502060...,SRX502056,SRX502054,SRX481466,SRX502068,SRX502058,SRX502061 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.50.AllAg.Prostate.bed ...

  9. File list: ALL.Prs.50.AllAg.Prostate_cancer [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.50.AllAg.Prostate_cancer hg19 All antigens Prostate Prostate cancer SRX5020...02062,SRX861679,SRX861684,SRX861685,SRX861681,SRX861678 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/ALL.Prs.50.AllAg.Prostate_cancer.bed ...

  10. File list: ALL.Prs.50.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.50.AllAg.Prostate hg19 All antigens Prostate Prostate SRX481465,SRX481464,S...RX502064,SRX502060,SRX502056,SRX502054,SRX481466,SRX502068,SRX502058,SRX502061 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/ALL.Prs.50.AllAg.Prostate.bed ...

  11. File list: ALL.Prs.05.AllAg.Prostate_cancer [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.05.AllAg.Prostate_cancer hg19 All antigens Prostate Prostate cancer SRX5020...61685,SRX861686,SRX502057,SRX502065,SRX502055,SRX502069 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/ALL.Prs.05.AllAg.Prostate_cancer.bed ...

  12. File list: ALL.Prs.05.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.05.AllAg.Prostate hg19 All antigens Prostate Prostate SRX502058,SRX502061,S...RX502064,SRX502056,SRX481466,SRX502060,SRX502068,SRX502054,SRX481465,SRX481464 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/ALL.Prs.05.AllAg.Prostate.bed ...

  13. File list: His.Prs.50.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available His.Prs.50.AllAg.Prostate mm9 Histone Prostate Prostate SRX283742,SRX283747,SRX2837...37,SRX283752,SRX373259,SRX283736,SRX283741,SRX373258,SRX283746,SRX283751 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/His.Prs.50.AllAg.Prostate.bed ...

  14. File list: Oth.Prs.50.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.50.AllAg.Prostate mm9 TFs and others Prostate Prostate SRX121185,SRX121186,...338,SRX121187,SRX286380,SRX286381 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/Oth.Prs.50.AllAg.Prostate.bed ...

  15. File list: Oth.Prs.05.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.05.AllAg.Prostate hg19 TFs and others Prostate Prostate SRX502058,SRX502061...,SRX502064,SRX502056,SRX481466,SRX502060,SRX502068,SRX502054 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.05.AllAg.Prostate.bed ...

  16. File list: Oth.Prs.10.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.10.AllAg.Prostate_cancer_cells hg19 TFs and others Prostate Prostate cancer... cells SRX022578,SRX022577 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.10.AllAg.Prostate_cancer_cells.bed ...

  17. File list: ALL.Prs.05.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.05.AllAg.Prostate mm9 All antigens Prostate Prostate SRX283738,SRX283748,SR...91,SRX467339,SRX286389,SRX385390 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/ALL.Prs.05.AllAg.Prostate.bed ...

  18. File list: ALL.Prs.20.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.20.AllAg.Prostate mm9 All antigens Prostate Prostate SRX283742,SRX283747,SR...39,SRX121187,SRX283746,SRX283751 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/ALL.Prs.20.AllAg.Prostate.bed ...

  19. File list: InP.Prs.50.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.50.AllAg.Prostate mm9 Input control Prostate Prostate SRX286393,SRX286391,S...RX286392,SRX385390,SRX283753,SRX283743,SRX283738,SRX283748,SRX467339 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/InP.Prs.50.AllAg.Prostate.bed ...

  20. File list: His.Prs.10.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available His.Prs.10.AllAg.Prostate mm9 Histone Prostate Prostate SRX283741,SRX283736,SRX2837...42,SRX283747,SRX283737,SRX283752,SRX373259,SRX283746,SRX373258,SRX283751 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/His.Prs.10.AllAg.Prostate.bed ...

  1. File list: His.Prs.20.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available His.Prs.20.AllAg.Prostate mm9 Histone Prostate Prostate SRX283742,SRX283747,SRX2837...37,SRX283752,SRX373259,SRX283741,SRX283736,SRX373258,SRX283746,SRX283751 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/His.Prs.20.AllAg.Prostate.bed ...

  2. File list: ALL.Prs.50.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.50.AllAg.Prostate mm9 All antigens Prostate Prostate SRX283742,SRX283747,SR...87,SRX286380,SRX283751,SRX286381 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/ALL.Prs.50.AllAg.Prostate.bed ...

  3. File list: ALL.Prs.10.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.10.AllAg.Prostate hg19 All antigens Prostate Prostate SRX502061,SRX481466,S...RX502060,SRX502068,SRX502064,SRX502054,SRX481465,SRX481464,SRX502056,SRX502058 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/ALL.Prs.10.AllAg.Prostate.bed ...

  4. File list: InP.Prs.10.AllAg.Prostate [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.10.AllAg.Prostate mm9 Input control Prostate Prostate SRX283738,SRX283743,S...RX467339,SRX286393,SRX286391,SRX385390,SRX286392,SRX283753,SRX283748 http://dbarchive.biosciencedbc.jp/kyushu-u/mm9/assembled/InP.Prs.10.AllAg.Prostate.bed ...

  5. File list: Pol.Prs.10.RNA_polymerase_III.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.10.RNA_polymerase_III.AllCell hg19 RNA polymerase RNA polymerase III Prosta...te http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Prs.10.RNA_polymerase_III.AllCell.bed ...

  6. File list: Pol.Prs.50.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.50.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Prostate...932,SRX020922,SRX022582 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Prs.50.RNA_polymerase_II.AllCell.bed ...

  7. File list: InP.Prs.50.AllAg.PC-3 [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.50.AllAg.PC-3 hg19 Input control Prostate PC-3 SRX539667,SRX084520,SRX43319...9,SRX433195,SRX1021636,SRX1021637,SRX181768,SRX540851 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/InP.Prs.50.AllAg.PC-3.bed ...

  8. File list: Oth.Prs.20.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.20.AllAg.Prostate_cancer_cells hg19 TFs and others Prostate Prostate cancer... cells SRX022578,SRX022577 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.20.AllAg.Prostate_cancer_cells.bed ...

  9. File list: Oth.Prs.50.GABPA.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.50.GABPA.AllCell hg19 TFs and others GABPA Prostate SRX326886,SRX326885,SRX...326884,SRX644408,SRX084526 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.50.GABPA.AllCell.bed ...

  10. File list: Oth.Prs.10.GABPA.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Oth.Prs.10.GABPA.AllCell hg19 TFs and others GABPA Prostate SRX326886,SRX326885,SRX...326884,SRX644408,SRX084526 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Oth.Prs.10.GABPA.AllCell.bed ...

  11. File list: DNS.Prs.05.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available DNS.Prs.05.AllAg.Prostate_cancer_cells hg19 DNase-seq Prostate Prostate cancer cell...s http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/DNS.Prs.05.AllAg.Prostate_cancer_cells.bed ...

  12. File list: Unc.Prs.50.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Unc.Prs.50.AllAg.Prostate_cancer_cells hg19 Unclassified Prostate Prostate cancer c...ells http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Unc.Prs.50.AllAg.Prostate_cancer_cells.bed ...

  13. File list: ALL.Prs.10.AllAg.Prostate_cancer [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.10.AllAg.Prostate_cancer hg19 All antigens Prostate Prostate cancer SRX5020...61686,SRX502069,SRX502057,SRX502065,SRX502059,SRX502055 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/ALL.Prs.10.AllAg.Prostate_cancer.bed ...

  14. File list: InP.Prs.50.AllAg.Prostate_cancer [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.50.AllAg.Prostate_cancer hg19 Input control Prostate Prostate cancer SRX861...688,SRX861686,SRX861689 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/InP.Prs.50.AllAg.Prostate_cancer.bed ...

  15. File list: InP.Prs.05.AllAg.Prostate_cancer [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.05.AllAg.Prostate_cancer hg19 Input control Prostate Prostate cancer SRX861...688,SRX861689,SRX861686 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/InP.Prs.05.AllAg.Prostate_cancer.bed ...

  16. File list: InP.Prs.20.AllAg.Prostate_cancer [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.20.AllAg.Prostate_cancer hg19 Input control Prostate Prostate cancer SRX861...688,SRX861689,SRX861686 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/InP.Prs.20.AllAg.Prostate_cancer.bed ...

  17. File list: ALL.Prs.20.AllAg.Prostate_cancer [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available ALL.Prs.20.AllAg.Prostate_cancer hg19 All antigens Prostate Prostate cancer SRX5020...02055,SRX861680,SRX861682,SRX861685,SRX861681,SRX861678 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/ALL.Prs.20.AllAg.Prostate_cancer.bed ...

  18. File list: InP.Prs.10.AllAg.Prostate_cancer [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.10.AllAg.Prostate_cancer hg19 Input control Prostate Prostate cancer SRX861...688,SRX861689,SRX861686 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/InP.Prs.10.AllAg.Prostate_cancer.bed ...

  19. File list: His.Prs.20.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available His.Prs.20.AllAg.Prostate_cancer_cells hg19 Histone Prostate Prostate cancer cells ...SRX022579,SRX022581,SRX022580 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/His.Prs.20.AllAg.Prostate_cancer_cells.bed ...

  20. File list: Pol.Prs.05.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.05.AllAg.Prostate_cancer_cells hg19 RNA polymerase Prostate Prostate cancer... cells SRX022582 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Prs.05.AllAg.Prostate_cancer_cells.bed ...

  1. File list: Pol.Prs.10.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.10.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Prostate...866,SRX173198,SRX173197 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Prs.10.RNA_polymerase_II.AllCell.bed ...

  2. File list: Pol.Prs.05.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.05.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Prostate...363,SRX173198,SRX173197 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Prs.05.RNA_polymerase_II.AllCell.bed ...

  3. File list: Pol.Prs.05.RNA_polymerase_III.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.05.RNA_polymerase_III.AllCell hg19 RNA polymerase RNA polymerase III Prosta...te http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Prs.05.RNA_polymerase_III.AllCell.bed ...

  4. File list: Pol.Prs.20.RNA_polymerase_II.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available Pol.Prs.20.RNA_polymerase_II.AllCell hg19 RNA polymerase RNA polymerase II Prostate...557,SRX173197,SRX173198 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/Pol.Prs.20.RNA_polymerase_II.AllCell.bed ...

  5. File list: InP.Prs.20.Input_control.AllCell [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.20.Input_control.AllCell hg19 Input control Input control Prostate SRX53966...X306505,SRX475374,SRX540851,SRX475375,SRX1098753,SRX334229,SRX176071,SRX315154 http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/InP.Prs.20.Input_control.AllCell.bed ...

  6. File list: DNS.Prs.20.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available DNS.Prs.20.AllAg.Prostate_cancer_cells hg19 DNase-seq Prostate Prostate cancer cell...s http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/DNS.Prs.20.AllAg.Prostate_cancer_cells.bed ...

  7. Assessing Primary Representational System (PRS) Preference for Neurolinguistic Programming (NLP) Using Three Methods.

    Science.gov (United States)

    Dorn, Fred J.

    1983-01-01

    Considered three methods of identifying Primary Representational System (PRS)--an interview, a word list, and a self-report--in a study of 120 college students. Results suggested the three methods offer little to counselors either collectively or individually. Results did not validate the PRS construct, suggesting the need for further research.…

  8. International Technical Working Group Round Robin Tests

    Energy Technology Data Exchange (ETDEWEB)

    Dudder, Gordon B.; Hanlen, Richard C.; Herbillion, Georges M.

    2003-02-01

    The goal of nuclear forensics is to develop a preferred approach to support illicit trafficking investigations. This approach must be widely understood and accepted as credible. The principal objectives of the Round Robin Tests are to prioritize forensic techniques and methods, evaluate attribution capabilities, and examine the utility of database. The HEU (Highly Enriched Uranium) Round Robin, and previous Plutonium Round Robin, have made tremendous contributions to fulfilling these goals through a collaborative learning experience that resulted from the outstanding efforts of the nine participating internal laboratories. A prioritized list of techniques and methods has been developed based on this exercise. Current work is focused on the extent to which the techniques and methods can be generalized. The HEU Round Robin demonstrated a rather high level of capability to determine the important characteristics of the materials and processes using analytical methods. When this capability is combined with the appropriate knowledge/database, it results in a significant capability to attribute the source of the materials to a specific process or facility. A number of shortfalls were also identified in the current capabilities including procedures for non-nuclear forensics and the lack of a comprehensive network of data/knowledge bases. The results of the Round Robin will be used to develop guidelines or a ''recommended protocol'' to be made available to the interested authorities and countries to use in real cases.

  9. International Technical Working Group Round Robin Tests

    International Nuclear Information System (INIS)

    Dudder, Gordon B.; Hanlen, Richard C.; Herbillion, Georges M.

    2003-01-01

    The goal of nuclear forensics is to develop a preferred approach to support illicit trafficking investigations. This approach must be widely understood and accepted as credible. The principal objectives of the Round Robin Tests are to prioritize forensic techniques and methods, evaluate attribution capabilities, and examine the utility of database. The HEU (Highly Enriched Uranium) Round Robin, and previous Plutonium Round Robin, have made tremendous contributions to fulfilling these goals through a collaborative learning experience that resulted from the outstanding efforts of the nine participating internal laboratories. A prioritized list of techniques and methods has been developed based on this exercise. Current work is focused on the extent to which the techniques and methods can be generalized. The HEU Round Robin demonstrated a rather high level of capability to determine the important characteristics of the materials and processes using analytical methods. When this capability is combined with the appropriate knowledge/database, it results in a significant capability to attribute the source of the materials to a specific process or facility. A number of shortfalls were also identified in the current capabilities including procedures for non-nuclear forensics and the lack of a comprehensive network of data/knowledge bases. The results of the Round Robin will be used to develop guidelines or a ''recommended protocol'' to be made available to the interested authorities and countries to use in real cases

  10. The Dirichlet-to-Robin Transform

    CERN Document Server

    Bondurant, J D

    2004-01-01

    A simple transformation converts a solution of a partial differential equation with a Dirichlet boundary condition to a function satisfying a Robin (generalized Neumann) condition. In the simplest cases this observation enables the exact construction of the Green functions for the wave, heat, and Schrodinger problems with a Robin boundary condition. The resulting physical picture is that the field can exchange energy with the boundary, and a delayed reflection from the boundary results. In more general situations the method allows at least approximate and local construction of the appropriate reflected solutions, and hence a "classical path" analysis of the Green functions and the associated spectral information. By this method we solve the wave equation on an interval with one Robin and one Dirichlet endpoint, and thence derive several variants of a Gutzwiller-type expansion for the density of eigenvalues. The variants are consistent except for an interesting subtlety of distributional convergence that affec...

  11. Phosphoribosylpyrophosphate synthetase of Escherichia coli. Properties of the purified enzyme and primary structure of the prs gene

    DEFF Research Database (Denmark)

    Hove-Jensen, Bjarne; Harlow, Kenneth W.; King, Cheryl J.

    1986-01-01

    Phosphoribosylpyrophosphate (P-Rib-PP) synthetase of Escherichia coli has been purified to near homogeneity from a strain harboring the prs gene, encoding P-Rib-PP synthetase, on a multicopy plasmid. Analysis of the enzyme showed that it required inorganic phosphate for activity and for stability...... the UAA translation stop codon, within a Thy-rich region following an inverted repeat sequence, indicative of an rho-independent transcription terminator....

  12. Prevalence of filarioid nematodes and trypanosomes in American robins and house sparrows, Chicago USA.

    Science.gov (United States)

    Hamer, Gabriel L; Anderson, Tavis K; Berry, Garrett E; Makohon-Moore, Alvin P; Crafton, Jeffrey C; Brawn, Jeffrey D; Dolinski, Amanda C; Krebs, Bethany L; Ruiz, Marilyn O; Muzzall, Patrick M; Goldberg, Tony L; Walker, Edward D

    2013-12-01

    Hosts are commonly infected with a suite of parasites, and interactions among these parasites can affect the size, structure, and behavior of host-parasite communities. As an important step to understanding the significance of co-circulating parasites, we describe prevalence of co-circulating hemoparasites in two important avian amplification hosts for West Nile virus (WNV), the American robin (Turdus migratorius) and house sparrow (Passer domesticus), during the 2010-2011 in Chicago, Illinois, USA. Rates of nematode microfilariemia were 1.5% of the robins (n = 70) and 4.2% of the house sparrows (n = 72) collected during the day and 11.1% of the roosting robins (n = 63) and 0% of the house sparrows (n = 11) collected at night. Phylogenetic analysis of nucleotide sequences of the 18S rRNA and cytochrome oxidase subunit I (COI) genes from these parasites resolved two clades of filarioid nematodes. Microscopy revealed that 18.0% of American robins (n = 133) and 16.9% of house sparrows (n = 83) hosted trypanosomes in the blood. Phylogenetic analysis of nucleotide sequences from the 18s rRNA gene revealed that the trypanosomes fall within previously described avian trypanosome clades. These results document hemoparasites in the blood of WNV hosts in a center of endemic WNV transmission, suggesting a potential for direct or indirect interactions with the virus.

  13. Prevalence of filarioid nematodes and trypanosomes in American robins and house sparrows, Chicago USA☆

    Science.gov (United States)

    Hamer, Gabriel L.; Anderson, Tavis K.; Berry, Garrett E.; Makohon-Moore, Alvin P.; Crafton, Jeffrey C.; Brawn, Jeffrey D.; Dolinski, Amanda C.; Krebs, Bethany L.; Ruiz, Marilyn O.; Muzzall, Patrick M.; Goldberg, Tony L.; Walker, Edward D.

    2012-01-01

    Hosts are commonly infected with a suite of parasites, and interactions among these parasites can affect the size, structure, and behavior of host–parasite communities. As an important step to understanding the significance of co-circulating parasites, we describe prevalence of co-circulating hemoparasites in two important avian amplification hosts for West Nile virus (WNV), the American robin (Turdus migratorius) and house sparrow (Passer domesticus), during the 2010–2011 in Chicago, Illinois, USA. Rates of nematode microfilariemia were 1.5% of the robins (n = 70) and 4.2% of the house sparrows (n = 72) collected during the day and 11.1% of the roosting robins (n = 63) and 0% of the house sparrows (n = 11) collected at night. Phylogenetic analysis of nucleotide sequences of the 18S rRNA and cytochrome oxidase subunit I (COI) genes from these parasites resolved two clades of filarioid nematodes. Microscopy revealed that 18.0% of American robins (n = 133) and 16.9% of house sparrows (n = 83) hosted trypanosomes in the blood. Phylogenetic analysis of nucleotide sequences from the 18s rRNA gene revealed that the trypanosomes fall within previously described avian trypanosome clades. These results document hemoparasites in the blood of WNV hosts in a center of endemic WNV transmission, suggesting a potential for direct or indirect interactions with the virus. PMID:24533314

  14. Robin Hoodist Oidipuseni / Pille-Riin Purje

    Index Scriptorium Estoniae

    Purje, Pille-Riin, 1963-

    1996-01-01

    'Ugala' külalisetendused Tallinnas: David Neilsoni 'Robin Hood' (lav. Peeter Tammearu); Mihhail Bulgakovi 'Poolearuline Jourdain' (lav. Üllar Saaremäe); Tirso de Molina 'Kadunud sõrmus' (lav. Andres Noormets); Talvo Pabuti 'Oidipuse kompleks' (lav. Andres Lepik); Anton Tshehhovi 'Kirsiaed' (lav. Kaarin Raid)

  15. Negative ion beam extraction in ROBIN

    International Nuclear Information System (INIS)

    Bansal, Gourab; Gahlaut, Agrajit; Soni, Jignesh; Pandya, Kaushal; Parmar, Kanu G.; Pandey, Ravi; Vuppugalla, Mahesh; Prajapati, Bhavesh; Patel, Amee; Mistery, Hiren; Chakraborty, Arun; Bandyopadhyay, Mainak; Singh, Mahendrajit J.; Phukan, Arindam; Yadav, Ratnakar K.; Parmar, Deepak

    2013-01-01

    Highlights: ► A RF based negative hydrogen ion beam test bed has been set up at IPR, India. ► Ion source has been successfully commissioned and three campaigns of plasma production have been carried out. ► Extraction system (35 kV) has been installed and commissioning has been initiated. Negative ion beam extraction is immediate milestone. -- Abstract: The RF based single driver −ve ion source experiment test bed ROBIN (Replica Of BATMAN like source in INDIA) has been set up at Institute for Plasma Research (IPR), India in a technical collaboration with IPP, Garching, Germany. A hydrogen plasma of density 5 × 10 12 cm −3 is expected in driver region of ROBIN by launching 100 kW RF power into the driver by 1 MHz RF generator. The cesiated source is expected to deliver a hydrogen negative ion beam of 10 A at 35 kV with a current density of 35 mA/cm 2 as observed in BATMAN. In first phase operation of the ROBIN ion source, a hydrogen plasma has been successfully generated (without extraction system) by coupling 80 kW RF input power through a matching network with high power factor (cos θ > 0.8) and different plasma parameters have been measured using Langmuir probes and emission spectroscopy. The plasma density of 2.5 × 10 11 cm −3 has been measured in the extraction region of ROBIN. For negative hydrogen ion beam extraction in second phase operation, extraction system has been assembled and installed with ion source on the vacuum vessel. The source shall be first operated in volume mode for negative ion beam extraction. The commissioning of the source with high voltage power supply has been initiated

  16. The defective phosphoribosyl diphosphate synthase in a temperature-sensitive prs-2 mutant of Escherichia coli is compensated by increased enzyme synthesis

    DEFF Research Database (Denmark)

    Post, David A.; Switzer, Robert L.; Hove-Jensen, Bjarne

    1996-01-01

    An Escherichia coli strain which is temperature-sensitive for growth due to a mutation (prs-2) causing a defective phosphoribosyl diphosphate (PRPP) synthase has been characterized. The temperature-sensitive mutation was mapped to a 276 bp HindIII-BssHII DNA fragment located within the open reading...... temperature shift to 42 degrees C. The other mutation was a C -> T transition located 39 bp upstream of the G -> A mutation, i.e. outside the coding sequence and close to the Shine-Dalgarno sequence. Cells harbouring only the C -> T mutation in a plasmid contained approximately three times as much PRPP...

  17. U-value measurements on ISO round Robin window

    DEFF Research Database (Denmark)

    Duer, Karsten

    1997-01-01

    9 laboratories in 6 european and 2 north american countries have participated in a round robin U-value test of a standard facade window. The objective of the round robin test was to verify that the ISO/CEN proposals for U-value measurement standard is robust.......9 laboratories in 6 european and 2 north american countries have participated in a round robin U-value test of a standard facade window. The objective of the round robin test was to verify that the ISO/CEN proposals for U-value measurement standard is robust....

  18. The effects of orchard pesticide applications on breeding robins

    Science.gov (United States)

    Johnson, E.V.; Mack, G.L.; Thompson, D.Q.

    1976-01-01

    From 1966 through 1968, robins reproduced successfully in commercial apple orchards which were periodically sprayed with DDT, dieldrin, and other pesticides. Observations by a Z-man team using walkie-talkies revealed that breeding robins obtained essentially all food for themselves and nestlings from unsprayed areas adjacent to the orchards. Invertebrate trapping in sprayed and unsprayed areas showed that these food items were 5 or 6 times more abundant in unsprayed habitat. Worms forced to live in sprayed orchard soil displayed significantly greater mortality than controls. Mean robin clutch sizes in the study orchards were lower than those reported for robins in other studies, perhaps because of food shortage and/or increased foraging distances. Levels of DDT and its analogs in food items from robin foraging areas did not exceed 8 ppm wet weight basis. From late April to July, adult robins showed small but significant increases in DDE levels in all tissues examined, as well as an increase in dieldrin in brains. Pesticides sprayed on the farm had no direct demonstrable adverse effects on the robins; productivity was high and adult mortality low. The situation was in large measure fortuitous, since any changes in orchard management practices which resulted in the presence or availability of invertebrates under orchard trees would be expected to result in robin mortality and/or reduced breeding success.

  19. System upgradation for surface mode negative ion beam extraction experiments in ROBIN

    International Nuclear Information System (INIS)

    Pandya, Kaushal; Bansal, Gourab; Gahlaut, Agrajit; Soni, Jignesh; Yadav, Ratnakar K.; Mahesh, Vuppugalla; Tyagi, Himanshu; Parmar, KanuG.; Mistri, Hiren; Bhagora, Jighesh; Prajapati, Bhavesh; Patel, Kartik; Bhuyan, Manas; Gouswami, Mehul; Bandyopadhyay, Mainak; Chakraborty, Arun K.

    2017-01-01

    Operational commissioning of ROBIN forms an important milestone in the Indian programme on the R&D on negative ion beams. The commissioning activity has been effected in sequence, in synchronisation with the availability of High voltage Power Supply (HVPS) systems and routine operation has now been established in the cesiated, surface mode. Significant efforts have been placed in upgrading the system to initiate the surface mode operation. These include incorporation of a temperature controlled Cesium (Cs) delivery system, spectroscopic diagnostics for detection of Cs lines, installation of plasma grid heating and closed loop warm water circuit for source components heating and Doppler Shift Spectroscopy (DSS) system. The specific design and integration features for these upgrades are discussed and preliminary results obtained from the operation of ROBIN in the surface mode are presented.

  20. System upgradation for surface mode negative ion beam extraction experiments in ROBIN

    Energy Technology Data Exchange (ETDEWEB)

    Pandya, Kaushal, E-mail: kpandya@ipr.res.in [Institute for Plasma Research, Near Indira Bridge, Bhat, Gandhinagar, 382428, Gujarat (India); Bansal, Gourab; Gahlaut, Agrajit; Soni, Jignesh [Institute for Plasma Research, Near Indira Bridge, Bhat, Gandhinagar, 382428, Gujarat (India); Yadav, Ratnakar K. [ITER-India, Institute for Plasma Research, Gandhinagar, Gujarat (India); Mahesh, Vuppugalla [Institute for Plasma Research, Near Indira Bridge, Bhat, Gandhinagar, 382428, Gujarat (India); Tyagi, Himanshu [ITER-India, Institute for Plasma Research, Gandhinagar, Gujarat (India); Parmar, KanuG.; Mistri, Hiren [Institute for Plasma Research, Near Indira Bridge, Bhat, Gandhinagar, 382428, Gujarat (India); Bhagora, Jighesh [ITER-India, Institute for Plasma Research, Gandhinagar, Gujarat (India); Prajapati, Bhavesh; Patel, Kartik [Institute for Plasma Research, Near Indira Bridge, Bhat, Gandhinagar, 382428, Gujarat (India); Bhuyan, Manas [ITER-India, Institute for Plasma Research, Gandhinagar, Gujarat (India); Gouswami, Mehul [Bhakti Management Services, Gandhinagar, 382007, Gujarat (India); Bandyopadhyay, Mainak [ITER-India, Institute for Plasma Research, Gandhinagar, Gujarat (India); Chakraborty, Arun K. [Institute for Plasma Research, Near Indira Bridge, Bhat, Gandhinagar, 382428, Gujarat (India)

    2017-01-15

    Operational commissioning of ROBIN forms an important milestone in the Indian programme on the R&D on negative ion beams. The commissioning activity has been effected in sequence, in synchronisation with the availability of High voltage Power Supply (HVPS) systems and routine operation has now been established in the cesiated, surface mode. Significant efforts have been placed in upgrading the system to initiate the surface mode operation. These include incorporation of a temperature controlled Cesium (Cs) delivery system, spectroscopic diagnostics for detection of Cs lines, installation of plasma grid heating and closed loop warm water circuit for source components heating and Doppler Shift Spectroscopy (DSS) system. The specific design and integration features for these upgrades are discussed and preliminary results obtained from the operation of ROBIN in the surface mode are presented.

  1. The EWGRD Round Robin Measurement Exercise

    Science.gov (United States)

    Thornton, D. A.; Wagemans, J.; Fernandes, A. C.; Girard, J. M.; Kis, D. P.; Klupák, V.; Mutnuru, R.; Philibert, H.; Rousseau, G.; Santos, J. P.; Serén, T.; Zsolnay, E. M.

    2016-02-01

    This paper presents the results of a round robin exercise carried out to compare specific activity measurements performed by eight European organisations on a set of ten neutron activation detectors containing the radio-nuclides 110mAg, 60Co, 54Mn, 46Sc and 94Nb. The purpose of the exercise was to demonstrate the level of consistency between the participating organisations in blind tests of measurements relevant to reactor metrology. The samples used were selected from a stock of pre-existing irradiated material held at SCK•CEN. Taking turns over a period of approximately 9 months, the participating organisations received the samples, measured them and provided their results to an independent referee who collated and compared the data. The inter-comparison has demonstrated good agreement between the participants with standard deviations for each dosimeter varying between 1.6% and 3.1%. The paper provides results of the EWGRD Round Robin in an anonymised form together with discussion and conclusions which may be drawn from the exercise.

  2. File list: InP.Prs.50.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.50.AllAg.Prostate_cancer_cells hg19 Input control Prostate Prostate cancer ...cells http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/InP.Prs.50.AllAg.Prostate_cancer_cells.bed ...

  3. File list: NoD.Prs.05.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available NoD.Prs.05.AllAg.Prostate_cancer_cells hg19 No description Prostate Prostate cancer... cells http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/NoD.Prs.05.AllAg.Prostate_cancer_cells.bed ...

  4. File list: InP.Prs.10.AllAg.Prostate_cancer_cells [Chip-atlas[Archive

    Lifescience Database Archive (English)

    Full Text Available InP.Prs.10.AllAg.Prostate_cancer_cells hg19 Input control Prostate Prostate cancer ...cells http://dbarchive.biosciencedbc.jp/kyushu-u/hg19/assembled/InP.Prs.10.AllAg.Prostate_cancer_cells.bed ...

  5. Structure of the gene encoding phosphoribosylpyrophosphate synthetase (prsA) in Salmonella typhimurium

    DEFF Research Database (Denmark)

    Bower, Stanley G.; Hove-Jensen, Bjarne; Switzer, Robert L.

    1988-01-01

    in a 416-base-pair 5' untranslated leader in the prsA transcript, which was shown by deletion to be necessary for maximal synthesis of phosphoribosylpyrophosphate synthetase. The S. typhimurium leader contains a 115-base-pair insert relative to the E. coli leader. The insert appears to have no functional...

  6. Round robin performance testing of organic photovoltaic devices

    DEFF Research Database (Denmark)

    Gevorgyan, Suren; Zubillaga, Oihana; de Seoane, José María Vega

    2014-01-01

    This study addresses the issue of poor intercomparability of measurements of organic photovoltaic (OPV) devices among different laboratories. We present a round robin performance testing of novel OPV devices among 16 laboratories, organized within the framework of European Research Infrastructure...

  7. PENDEKATAN BRAINSTORMINGROUND-ROBIN UNTUK MENINGKATKAN KEMAMPUAN KOMUNIKASIMATEMATIS SISWA SMP

    Directory of Open Access Journals (Sweden)

    Maya Siti Rohmah

    2015-07-01

    Full Text Available ABSTRAK Penelitian ini bertujuan untuk mengetahui peningkatan kemampuan komunikasi matematis siswa yang pembelajarannya menggunakan Brainstorming Round-Robin dibandingkan dengan siswa yang pembelajarannya konvensional. Penelitian kuasi eksperimen ini mengambil populasi siswa kelas VII pada salah satu SMP di kabupaten Bandung Barat dengan sampel 2 kelas. Dari dua kelas yang dipilih dalam penelitian ini, salah satunya digunakan sebagai kelas eksperimen yang memperoleh pembelajaran dengan pendekatan Brainstorming Round-Robin, sedangkan kelas lainnnya sebagai kelas kontrol yang pembelajarannya konvensional. Kedua kelompok diberikan pretes dan postes kemampuan komunikasi matematis. Data N-gain yang diperoleh diuji secara kuantitatif dengan uji perbedaan rerata nonparametrik Mann-Whitney. Hasil penelitian menunjukkan bahwa peningkatan kemampuan komunikasi matematis siswa yang mendapat pembelajaran dengan menggunakan pendekatan Brainstorming Round-Robin lebih baik daripada siswa yang pembelajarannya konvensional. Kata Kunci    :     Brainstorming Round-Robin, KomunikasiMatematis     ABSTRACT The aims of these research are to determine anincrease in mathematics communication of students who obtain learning using Round-Robin Brainstormingbetter thanstudents who receivedconventional learning. This quasi experimental take population all students at class VII in one of public secondary school in West Bandung district with 2 classes as sample. From this 2 classes choosen in this research, one of them as an experimental classthatacquirelearningwithRound-Robin Brainstormingapproach, and the other one as acontrol class that receive conventional learning. Both groups weregiven thepretest and posttest of mathematics communication. N-gain data obtainedquantitatively,testedwitha meandifference testnonparametricMann-Whitney. The results showedthat an achievement and increase inmathematics communication of students thatgetslearning usingRound-Robin

  8. Conceptual design of Decade Half, a 15-MA, 300-ns PRS driver

    International Nuclear Information System (INIS)

    Spence, Phil; Corcoran, Pat; Douglas, John; Tucker, Terry; Altes, Bob; Childers, Kendall; Sincerny, Peter; Whitehead, Lavell; Kenyon, Van; Babineau, Marc; Cotter, Tim; Kurucz, Pete; Davis, R.

    2002-01-01

    The Decade radiation effects simulator is located at AEDC and presently consists of four modules capable of operation as either a large area bremsstrahlung source (Decade Quad LAB) or a plasma radiation source (Decade Quad PRS). During 2001 we investigated several conceptual system architectures for connecting the current of eight Decade modules to a single PRS load. This Decade Half radiation source will be used in combination with other synchronized radiation effects simulators to offer a combined-effects testing capability at AEDC. We describe and compare the projected performance, risk, and relative cost of several rough conceptual designs, and discuss in more detail the 'water bridge' concept that was selected for more complete conceptual design development. We present a self-consistent electrical and mechanical conceptual design for Decade Half, including an equivalent circuit model, details of the mechanical architecture (including operation, maintenance, and turnaround considerations), and electrical performance estimates of approximately 15 MA peak current delivered to a representative large radius, ∼ 300 ns implosion time PRS load

  9. Development and characterization of membrane surface display system using molecular chaperon, prsA, of Bacillus subtilis

    International Nuclear Information System (INIS)

    Kim, June-Hyung; Park, In-Suk; Kim, Byung-Gee

    2005-01-01

    We report a new membrane surface display system based on molecular chaperon, prsA, of Bacillus subtilis. Clostridium thermocellum cellulase, celA, was fused to C-terminal end of PrsA. Cellulase activity of B. subtilis protoplast, which expressed PrsA-CelA was 15 times higher compared to control strain. More than 85% of total cellulase activity was observed in surface displayed format and less than 15% of total cellulase activity was found in supernatant. Flow cytometric analysis of protoplast of PrsA-CelA fusion expressing bacteria provided another proof of uniform expression of fusion protein onto cytoplasmic membrane of B. subtilis. Without lysozyme treatment, only part of cellulase activity (10%) was observed in whole cell fraction

  10. 76 FR 34122 - 30-Day Notice of Proposed Information Collection: NEA/PI Online Performance Reporting System (PRS)

    Science.gov (United States)

    2011-06-10

    ... political, economic, education and women's rights reform in 20 countries of the Middle East and North Africa... PRS streamlines communication with implementers and allows for rapid identification of information...

  11. Wild North Island Robins (Petroica longipes respond to Prey Animacy

    Directory of Open Access Journals (Sweden)

    Alexis Garland

    2014-08-01

    Full Text Available North Island robins of New Zealand are a food hoarding species, which is unique in that they almost exclusively cache highly perishable hunted insects for later retrieval. In order to do so, they either kill and dismember or paralyze their prey for caching, depending on the prey size and kind. The present study comprises two experiments, using a Violation of Expectancy (VoE paradigm to examine variation in search behavior response to different prey conditions. The first experiment presents three different types of prey (mealworms, earthworms and locusts in expected (present and unexpected (absent conditions. The second experiment presents prey in varying states of animacy (alive and whole, dead and whole, dead and halved, and an inanimate stick and reveals prey in expected (same state or unexpected (differing state conditions. While robins did not respond with differential search times to different types of unexpectedly missing prey in Experiment 1, in Experiment 2 robins searched longer in conditions where prey was found in a differing state of animacy than initially shown. Robins also searched longer for prey when immediately consuming retrieved prey than when caching retrieved prey. Results indicate that North Island robins may be sensitive to prey animacy upon storage and retrieval of insect prey; such information could play a role in storage, pilfering and retrieval strategies of such a perishable food source.

  12. Recommended Protocol for Round Robin Studies in Additive Manufacturing

    Science.gov (United States)

    Moylan, Shawn; Brown, Christopher U.; Slotwinski, John

    2016-01-01

    One way to improve confidence and encourage proliferation of additive manufacturing (AM) technologies and parts is by generating more high quality data describing the performance of AM processes and parts. Many in the AM community see round robin studies as a way to generate large data sets while distributing the cost among the participants, thereby reducing the cost to individual users. The National Institute of Standards and Technology (NIST) has conducted and participated in several of these AM round robin studies. While the results of these studies are interesting and informative, many of the lessons learned in conducting these studies concern the logistics and methods of the study and unique issues presented by AM. Existing standards for conducting interlaboratory studies of measurement methods, along with NIST’s experience, form the basis for recommended protocols for conducting AM round robin studies. The role of round robin studies in AM qualification, some of the limitations of round robin studies, and the potential benefit of less formal collaborative experiments where multiple factors, AM machine being only one, are varied simultaneously are also discussed. PMID:27274602

  13. A calculational round robin in elastic-plastic fracture mechanics

    International Nuclear Information System (INIS)

    Larsson, L.H.

    Eighteen organizations participated in this round robin which treated the same three-point bend problem as an ASTM round robin four years earlier. Overall deformation, J, CTOD and crack profile were the main results required using plane strain elastic-plastic finite element analysis for a monotonically increasing load up to a maximum deformation which was far beyond the elastic regime. All elastic solutions were accurate to within a few percent. In the elastic-plastic regime, however, there was a large scatter of the results, increasing with increasing plastic deformation and roughly of the same order as in the ASTM round robin which contained ten solutions. Apparently no significant progress has taken place in the state of the art of numerical EPFM analysis in four years time. The paper discusses the reasons for this scatter and draws tentative conclusions on the most suitable numerical analysis methods in EPFM. (Auth.)

  14. Round-Robin Test of Paraffin Phase-Change Material

    Science.gov (United States)

    Vidi, S.; Mehling, H.; Hemberger, F.; Haussmann, Th.; Laube, A.

    2015-11-01

    A round-robin test between three institutes was performed on a paraffin phase-change material (PCM) in the context of the German quality association for phase-change materials. The aim of the quality association is to define quality and test specifications for PCMs and to award certificates for successfully tested materials. To ensure the reproducibility and comparability of the measurements performed at different institutes using different measuring methods, a round-robin test was performed. The sample was unknown. The four methods used by the three participating institutes in the round-robin test were differential scanning calorimetry, Calvet calorimetry and three-layer calorimetry. Additionally, T-history measurements were made. The aim of the measurements was the determination of the enthalpy as a function of temperature. The results achieved following defined test specifications are in excellent agreement.

  15. An Embedded Real-Time System on ATLAS ROBIN

    OpenAIRE

    Yu, Maoyuan

    2012-01-01

    ATLAS is the largest particle detector at the Large Hadron Collider for high energy physics experiments that produces over 40 TB/s event data. The ATLAS Readout Buffer INput(ROBIN) subsystem is an essential device to buffer and reduce the data, which has a IBM PowerPC core for the control functionalities. This dissertation addresses the software design of an embedded real-time system centering on the PowerPC micro-controller, as the management core of the ROBIN. A page-based solution is pr...

  16. Programme Reporting Standards (PRS for improving the reporting of sexual, reproductive, maternal, newborn, child and adolescent health programmes

    Directory of Open Access Journals (Sweden)

    Anna E. Kågesten

    2017-08-01

    Full Text Available Abstract Background Information about design, implementation, monitoring and evaluation is central to understand the impact of programmes within the field of sexual, reproductive, maternal, newborn, child and adolescent health (SRMNCAH. Existing reporting guidelines do not orient on reporting of contextual and implementation issues in sufficient detail. We therefore developed Programme Reporting Standards (PRS to be used by SRMNCAH programme implementers and researchers. Methods Building on the first step of the PRS development (a systematic review to identify reporting items, we conducted a three-round online Delphi consensus survey with experts. Consensus was defined a-priori as 80% agreement of items as essential. This was followed by a technical consultation with a group of experts to refine the items, definitions and their structuring. The revised PRS was piloted to assess its relevance to current SRMNCAH programme reports and identify key issues regarding the use of the PRS. Results Of the 81 participants invited to the Delphi survey, 20 responded to all three rounds. In the final round, 27 items received consensus as essential; three items were ranked as “borderline” essential; 20 items as supplementary. The items were subsequently revised, followed by a technical consultation with 29 experts to further review and refine the PRS. The feedback resulted in substantial changes to the structure and content of the PRS into 24 items across five domains: Programme overview; Programme components and implementation; Monitoring of Implementation; Evaluation and Results; and Synthesis. This version was used in a piloting exercise, where questions regarding how much information to report and how to comment on the quality of the information reported were addressed. All items were kept in the PRS following the pilot although minor changes were made to the flow and description of items. Conclusions The PRS 1.0 is the result of a structured

  17. Security proof for round robin differential phase shift QKD

    NARCIS (Netherlands)

    Leermakers, D.; Skoric, B.

    2017-01-01

    We give the first information-theoretic security proof of the `Round Robin Differential Phase Shift' Quantum Key Distribution scheme. Our proof consists of the following steps. We construct an EPR variant of the scheme. We identify Eve's optimal way of coupling an ancilla to an EPR qudit pair under

  18. Characterization of the hemA-prs region of the Escherichia coli and Salmonella typhimurium chromosomes

    DEFF Research Database (Denmark)

    Post, David A.; Hove-Jensen, Bjarne; Switzer, Robert L.

    1993-01-01

    The prs gene, encoding phosphoribosylpyrophosphate synthetase, is preceded by a leader, which is 302 bp long in Escherichia coli and 417 bp in Salmonella typhimurium. A potential open reading frame (ORF) extends across the prs promoter and into the leader. The region between the prs coding region...... two promoters, the first promoter (P1) originating upstream of ORF 1, and expressing the prs gene in a tricistronic operon and a second promoter (P2), located within the ORF 2 coding frame, which transcribes the prs gene only. The transcripts encoding prs only were 20 times as abundant...... in the amount of message originating from the promoter P2....

  19. Modelo analítico del efecto de PRS sobre satélites GPS

    Science.gov (United States)

    Meza, A.; Brunini, C.; Usandivaras, J. C.

    El sistema GPS (Global Position System) es, hoy en día, la herramienta de navegación y posicionamiento más potente y lo será sin duda en la próxima década. Gran parte de su valiosa utilidad se debe a la alta precisión que permite lograr y ésta, a su vez, depende, entre otras causas, de la precisión con que se conocen las órbitas de los satélites. La presión de radiación solar (PRS) fija el límite de la precisión con que pueden calcularse en la actualidad las efemérides satelitarias. El objetivo de este trabajo es proponer una mejor resolución de este fenómeno. El modelo analítico aquí presentado, se basa en el análisis del comportamiento de los residuos de un ajuste por mínimos cuadrados en el que se utiliza el modelo de PRS propuesto por Beutler. El mismo consiste en un modelo determinista del fenómeno con dos parámetros libres. Los resultados obtenidos ponen de manifiesto que, aún después de aplicar dichos parámetros, prevalecen en los residuos efectos semidiurnos en las componentes radial,tangencial y normal. Estos resultados obtenidos se comparan con los de un trabajo desarrollado por el Instituto de Berne (Beutler et al., 1994), en el que se utilizaron como pseudo-observaciones las órbitas precisas del IGS (CODE). El intervalo de integración escogido por este centro fueron las semanas 680 y 681. En resumen se tienen arcos de 14 días para todos los satélites, donde las efemérides precisas de los mismos para los 14 días fueron utilizados como pseudo-observaciones. El modelo de fuerza que empleó dicho centro fue básicamente el tradicional en lo que respecta al modelo de las fuerzas gravitacionales, y para la PRS utilizo el modelo standard de Beutler. Los parámetros de este modelo junto con las 6 condiciones iniciales (posición y velocidad) fueron ajustados por el método general de mínimos cuadrados. Los residuos en la componente radial, tangencial y normal, para los satélites con un buen comportamiento, presentan una

  20. Generalized Robin Boundary Conditions, Robin-to-Dirichlet Maps, and Krein-Type Resolvent Formulas for Schr\\"odinger Operators on Bounded Lipschitz Domains

    OpenAIRE

    Gesztesy, Fritz; Mitrea, Marius

    2008-01-01

    We study generalized Robin boundary conditions, Robin-to-Dirichlet maps, and Krein-type resolvent formulas for Schr\\"odinger operators on bounded Lipschitz domains in $\\bbR^n$, $n\\ge 2$. We also discuss the case of bounded $C^{1,r}$-domains, $(1/2)

  1. Reactor Pressure Vessel P-T Limit Curve Round Robin

    Energy Technology Data Exchange (ETDEWEB)

    Jang, C.H.; Moon, H.R.; Jeong, I.S. [Korea Electric Power Research Institute, Taejon (Korea)

    2002-07-01

    This report is the summary of the analysis results for the P-T Limit Curve construction which have been subjected to the round robin analysis. The purpose of the round robin is to compare the procedure and method used in various organizations to construct P-T limit curve to prevent brittle fracture of reactor pressure vessel of nuclear power plants. Each Participant used its own approach to construct the P-T limit curve and submitted the results, By analyzing the results, the reference procedure for the P-T limit curve could be established. This report include the results of the comparison of the procedure and method used by the participants, and sensitivity study of the key parameters. (author) 23 refs, 88 figs, 17 tabs.

  2. Robin Huws Jones (United Kingdom, President 1976- 1980

    Directory of Open Access Journals (Sweden)

    2008-07-01

    Full Text Available Robin Huws Jones, President of the International Association of Schools of Social Work from 1976 to 1980, lived a life of challenge and change. Born in Wales in 1909, he often remarked that learning to speak Welsh at age two was such a challenge that he didn’t bother to learn English until he was six. The death of his mother when he was three led to the first of many changes in a life that was not easy in the formative years. Robin remained in the care of his father while his sister became the ward of two aunts. With his father, a draper’sassistant, he left Wales to live in a crowded boarding house in Liverpool.

  3. Bound states in waveguides with complex Robin boundary conditions

    Czech Academy of Sciences Publication Activity Database

    Novák, Radek

    2016-01-01

    Roč. 96, 3-4 (2016), s. 251-281 ISSN 0921-7134 R&D Projects: GA ČR(CZ) GA14-06818S Institutional support: RVO:61389005 Keywords : non-self-adjointness * waveguide * Robin boundary conditions * spectral analysis * essential spectrum * weak coupling * Birman-Schwinger principle * reality of the spectrum Subject RIV: BE - Theoretical Physics Impact factor: 0.933, year: 2016

  4. Initiating round robins in the L2 classroom - preliminary observations

    DEFF Research Database (Denmark)

    Mortensen, Kristian; Hazel, Spencer

    2011-01-01

    Complementing recent interactional research on the contingent operation of online task accomplishment, this paper deals with a specific way of organizing and managing tasks in plenary L2 classrooms – namely the round robin. This may seem like a “traditional” and rigid form of classroom organizati...... and artefacts and graphic structures that are used not only as mediating tools in the (supposed) learning relevant activity, but also as structurally relevant features to organize the ongoing interaction, in which these activities emerge....

  5. Manipulating Tournaments in Cup and Round Robin Competitions

    OpenAIRE

    Russell, Tyrel; Walsh, Toby

    2009-01-01

    In sports competitions, teams can manipulate the result by, for instance, throwing games. We show that we can decide how to manipulate round robin and cup competitions, two of the most popular types of sporting competitions in polynomial time. In addition, we show that finding the minimal number of games that need to be thrown to manipulate the result can also be determined in polynomial time. Finally, we show that there are several different variations of standard cup competitions where mani...

  6. A calculational round robin in elastic-plastic fracture mechanics

    International Nuclear Information System (INIS)

    Larsson, L.H.

    1983-01-01

    Eighteen organisations participated in this elastic-plastic fracture mechanics (EPFM) numerical analysis round robin which treated the same three-point bend problem as a similar round robin conducted by ASTM four years earlier. The work involved the calculation of overall deformation, J, CTOD and crack profile using plane strain elastic-plastic finite element analysis for a monotonically increasing load up to a maximum deformation which was far beyond the elastic regime. It was found that all of the elastic solutions were accurate to within a few per cent. In the elastic-plastic regime, however, there was a large scatter of the results, increasing with increasing plastic deformation and roughly of the same order as in the ASTM round robin which contained ten solutions. No significant progress has taken place in the state of the art of numerical EPFM analysis over the four-year interval. The reasons for this scatter and tentative conclusions on the most suitable numerical analysis methods in EPFM are discussed. (author)

  7. Kniest disease with Pierre Robin syndrome and hydrocephalus

    International Nuclear Information System (INIS)

    Silengo, M.C.; Davi, G.F.; Bianco, R.; DeMarco, A.; Franceschini, P.

    1983-01-01

    A 3-month-old male infant with clinical and radiological features of Kniest disease is reported. Additional findings were severe Pierre Robin syndrome and external hydrocephalus. The patient was retarded in mental and motor development. He died at 4 months of age from the complications of tracheostomy. The parents were both normal clinically and radiologically, thus the disease in the child was presumably due to a new mutation. The reported familial cases of Kniest disease suggest autosomal dominant inheritance. The differential diagnosis is discussed in detail. (orig.)

  8. Characterization of ASTM round-robin tungsten-powder samples

    International Nuclear Information System (INIS)

    Slettevold, C.A.; Biermann, A.H.

    1975-01-01

    The Lawrence Livermore Laboratory Particle Characterization Laboratory Group has participated in an industry-wide round-robin investigation on characterization of tungsten powder. sponsored by the ASTM Subcommittee on Refractory-Metal Powders (B-09.3). The analyses performed at the suggestion of the ASTM subcommittee included measurements of tap density, apparent density, true density, average particle size, and surface area. Determinations of particle-weight and size distributions were also performed and particle inspection conducted by microscopy. This report describes the equipment and procedures used and summarizes the results of these analyses. (9 tables, 17 fig) (U.S.)

  9. Round robin test for zirconium alloys in 400 deg C steam: results from EDF

    International Nuclear Information System (INIS)

    Blat, M.

    1994-01-01

    The EDF Material Studies Branch has participated in the Round Robin program of uniform corrosion on zirconium alloys. The objectives of these Round Robin corrosion tests are to generate new uniform corrosion weight gain date utilizing modern zirconium alloy products and to improve the International and ASTM standards. (author). 2 tabs., 7 appendix., 2 refs

  10. PRS: PERSONNEL RECOMMENDATION SYSTEM FOR HUGE DATA ANALYSIS USING PORTER STEMMER

    Directory of Open Access Journals (Sweden)

    T N Chiranjeevi

    2016-04-01

    Full Text Available Personal recommendation system is one which gives better and preferential recommendation to the users to satisfy their personalized requirements such as practical applications like Webpage Preferences, Sport Videos preferences, Stock selection based on price, TV preferences, Hotel preferences, books, Mobile phones, CDs and various other products now use recommender systems. The existing Pearson Correlation Coefficient (PCC and item-based algorithm using PCC, are called as UPCC and IPCC respectively. These systems are mainly based on only the rating services and does not consider the user personal preferences, they simply just give the result based on the ratings. As the size of data increases it will give the recommendations based on the top rated services and it will miss out most of user preferences. These are main drawbacks in the existing system which will give same results to the users based on some evaluations and rankings or rating service, they will neglect the user preferences and necessities. To address this problem we propose a new approach called, Personnel Recommendation System (PRS for huge data analysis using Porter Stemmer to solve the above challenges. In the proposed system it provides a personalized service recommendation list to the users and recommends the most useful services to the users which will increase the accuracy and efficiency in searching better services. Particularly, a set of suggestions or keywords are provided to indicate user preferences and we used Collaborative Filtering and Porter Stemmer algorithm which gives a suitable recommendations to the users. In real, the broad experiments are conducted on the huge database which is available in real world, and outcome shows that our proposed personal recommender method extensively improves the precision and efficiency of service recommender system over the KASR method. In our approach mainly consider the user preferences so it will not miss out the any of the data

  11. High-temperature and high-humidity response of the Eberline Model PRS-2 and the Eberline Model NRD neutron detector

    International Nuclear Information System (INIS)

    McAtee, J.L.

    1981-03-01

    The high-humidity and high-temperature response of the Eberline Model PRS-2 portable scaler-ratemeter and the Eberline Model NRD neutron detector was studied in an environmental chamber. The BF 3 probe used in the NRD detector was found to produce count rate surges at temperatures > 50 0 C and at relative humidity > 50%. The PRS-2 scaler-ratemeter was found to be relatively insensitive to high temperatures and high humidity

  12. Japanese round robin analysis for probabilistic fracture mechanics

    International Nuclear Information System (INIS)

    Yagawa, G.; Yoshimura, S.; Handa, N.

    1991-01-01

    Recently attention is focused on the probabilistic fracture mechanics, a branch of fracture mechanics with probability theory for a rational mean to assess the strength of components and structures. In particular, the probabilistic fracture mechanics is recognized as the powerful means for quantitative investigation of significance of factors and rational evaluation of life on problems involving a number of uncertainties, such as degradation of material strength, accuracy and frequency of inspection. Comparison with reference experiments are generally employed to assure the analytical accuracy. However, accuracy and reliability of analytical methods in the probabilistic fracture mechanics are hardly verified by experiments. Therefore, it is strongly needed to verify the probabilistic fracture mechanics through the round robin analysis. This paper describes results from the round robin analysis of flat plate with semi-elliptic cracks on the surface, conducted by the PFM Working Group of LE Subcommittee of the Japan Welding Society under the contract of the Japan Atomic Energy Research Institute and participated by Tokyo University, Yokohama National University, the Power Reactor and Nuclear Fuel Corporation, Tokyo Electric Power Co. Central Research Institute of Electric Power Industry, Toshiba Corporation, Kawasaki Heavy Industry Co. and Mitsubishi Heavy Industry Co. (author)

  13. International Round-Robin Testing of Bulk Thermoelectrics

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Hsin [ORNL; Porter, Wallace D [ORNL; Bottner, Harold [Fraunhofer-Institute, Freiburg, Germany; Konig, Jan [Fraunhofer-Institute, Freiburg, Germany; Chen, Lidong [Chinese Academy of Sciences; Bai, Shengqiang [Chinese Academy of Sciences; Tritt, Terry M. [Clemson University; Mayolett, Alex [Corning, Inc; Smith, Charlene [Corning, Inc; Harris, Fred [ZT-Plus; Sharp, Jeff [Marlow Industries, Inc; Lo, Jason [CANMET - Materials Technology Laboratory, Natural Resources of Canada; Keinke, Holger [University of Waterloo, Canada; Kiss, Laszlo I. [University of Quebec at Chicoutimi

    2011-11-01

    Two international round-robin studies were conducted on transport properties measurements of bulk thermoelectric materials. The study discovered current measurement problems. In order to get ZT of a material four separate transport measurements must be taken. The round-robin study showed that among the four properties Seebeck coefficient is the one can be measured consistently. Electrical resistivity has +4-9% scatter. Thermal diffusivity has similar +5-10% scatter. The reliability of the above three properties can be improved by standardizing test procedures and enforcing system calibrations. The worst problem was found in specific heat measurements using DSC. The probability of making measurement error is great due to the fact three separate runs must be taken to determine Cp and the baseline shift is always an issue for commercial DSC. It is suggest the Dulong Petit limit be always used as a guide line for Cp. Procedures have been developed to eliminate operator and system errors. The IEA-AMT annex is developing standard procedures for transport properties testing.

  14. Fracture Toughness Round Robin Test International in pressure tube materials

    International Nuclear Information System (INIS)

    Villagarcia, M.P.; Liendo, M.F.

    1993-01-01

    Part of the pressure tubes surveillance program of CANDU type reactors is to determine the fracture toughness using a special fracture specimen and test procedure. Atomic Energy of Canada Limited decided to hold a Round Robin Test International and 9 laboratories participated worldwide in which several pressure tube materials were selected: Zircaloy-2, Zr-2.5%Nb cold worked and Zr-2.5%Nb heat treated. The small specimens used held back the thickness and curvature of the tube. J-R curves at room temperature were obtained and the crack extension values were determined by electrical potential drop techniques. These values were compared with results generated from other laboratories and a bid scatter was founded. It could be due to slight variations in the test method or inhomogeneity of the materials and a statistical study must be done to see if there is any pattern. The next step for the Round Robin Test would be to make some modifications in the test method in order to reduce the scatter. (Author)

  15. Solution structure of the parvulin-type PPIase domain of Staphylococcus aureus PrsA – Implications for the catalytic mechanism of parvulins

    Directory of Open Access Journals (Sweden)

    Koskela Harri

    2009-03-01

    Full Text Available Abstract Background Staphylococcus aureus is a Gram-positive pathogenic bacterium causing many kinds of infections from mild respiratory tract infections to life-threatening states as sepsis. Recent emergence of S. aureus strains resistant to numerous antibiotics has created a need for new antimicrobial agents and novel drug targets. S. aureus PrsA is a membrane associated extra-cytoplasmic lipoprotein which contains a parvulin-type peptidyl-prolyl cis-trans isomerase domain. PrsA is known to act as an essential folding factor for secreted proteins in Gram-positive bacteria and thus it is a potential target for antimicrobial drugs against S. aureus. Results We have solved a high-resolution solution structure of the parvulin-type peptidyl-prolyl cis-trans isomerase domain of S. aureus PrsA (PrsA-PPIase. The results of substrate peptide titrations pinpoint the active site and demonstrate the substrate preference of the enzyme. With detailed NMR spectroscopic investigation of the orientation and tautomeric state of the active site histidines we are able to give further insight into the structure of the catalytic site. NMR relaxation analysis gives information on the dynamic behaviour of PrsA-PPIase. Conclusion Detailed structural description of the S. aureus PrsA-PPIase lays the foundation for structure-based design of enzyme inhibitors. The structure resembles hPin1-type parvulins both structurally and regarding substrate preference. Even though a wealth of structural data is available on parvulins, the catalytic mechanism has yet to be resolved. The structure of S. aureus PrsA-PPIase and our findings on the role of the conserved active site histidines help in designing further experiments to solve the detailed catalytic mechanism.

  16. A Giant Heart Tumor in Neonate with Clinical Signs of Pierre - Robin Syndrome

    OpenAIRE

    Bejiqi, Ramush; Retkoceri, Ragip; Xhema-Bejiqi, Hana; Bejiqi, Rinor; Maloku, Arlinda

    2017-01-01

    Introduction: Pierre Robin syndrome is a congenital condition of facial abnormalities in humans. The three main features are: cleft palate, retrognathia and glossoptosis. Rarely heart tumors are associated with syndromes, mostly are isolated. Case report: In this presentation we describe a 3-weeks-old girl with Pierre-Robin syndrome and giant left ventricle tumor, diagnosed initially by transthoracic echocardiography. The purpose of this report is to review the literature on the fetuses and n...

  17. Requests for post-registration studies (PRS), patients follow-up in actual practice: Changes in the role of databases.

    Science.gov (United States)

    Berdaï, Driss; Thomas-Delecourt, Florence; Szwarcensztein, Karine; d'Andon, Anne; Collignon, Cécile; Comet, Denis; Déal, Cécile; Dervaux, Benoît; Gaudin, Anne-Françoise; Lamarque-Garnier, Véronique; Lechat, Philippe; Marque, Sébastien; Maugendre, Philippe; Méchin, Hubert; Moore, Nicholas; Nachbaur, Gaëlle; Robain, Mathieu; Roussel, Christophe; Tanti, André; Thiessard, Frantz

    2018-02-01

    Early market access of health products is associated with a larger number of requests for information by the health authorities. Compared with these expectations, the growing expansion of health databases represents an opportunity for responding to questions raised by the authorities. The computerised nature of the health system provides numerous sources of data, and first and foremost medical/administrative databases such as the French National Inter-Scheme Health Insurance Information System (SNIIRAM) database. These databases, although developed for other purposes, have already been used for many years with regard to post-registration studies (PRS). The use thereof will continue to increase with the recent creation of the French National Health Data System (SNDS [2016 health system reform law]). At the same time, other databases are available in France, offering an illustration of "product use under actual practice conditions" by patients and health professionals (cohorts, specific registries, data warehouses, etc.). Based on a preliminary analysis of requests for PRS, approximately two-thirds appeared to have found at least a partial response in existing databases. Using these databases has a number of disadvantages, but also numerous advantages, which are listed. In order to facilitate access and optimise their use, it seemed important to draw up recommendations aiming to facilitate these developments and guarantee the conditions for their technical validity. The recommendations drawn up notably include the need for measures aiming to promote the visibility of research conducted on databases in the field of PRS. Moreover, it seemed worthwhile to promote the interoperability of health data warehouses, to make it possible to match information originating from field studies with information originating from databases, and to develop and share algorithms aiming to identify criteria of interest (proxies). Methodological documents, such as the French National

  18. Accentuated Virchow-Robin spaces in the centrum semiovale in children with autistic disorder.

    Science.gov (United States)

    Taber, Katherine H; Shaw, J Bryant; Loveland, Katherine A; Pearson, Deborah A; Lane, David M; Hayman, L Anne

    2004-01-01

    The purpose of this study was to assess the incidence of abnormal Virchow-Robin (VR) spaces in children and adolescents with an autistic disorder (AD). An increased incidence of enlarged VR spaces in children has been reported in several developmental disorders. Sixteen children and adolescents (13 male, 3 female; mean age = 143.5 months; mean IQ = 95.1) with an AD, verified by use of standardized procedures (Autism Diagnostic Interview-Revised and Autism Diagnostic Observation Schedule-Revised), received cranial magnetic resonance (MR) imaging. Sixteen children and adolescents (13 male, 3 female; mean age = 160.7 months; mean IQ = 111.6) without AD, as determined using the same procedures, were scanned as a comparison group. The MR scans were performed using a 1.5-T scanner. Two T1-weighted spoiled GRASS sequences (0.7-mm coronal thin-slice, 0-mm gap; 1.5-mm sagittal, 0-mm gap) and a complementary T2-weighted fast spin echo sequence (1.5-mm, 0-mm gap) were obtained. A neuroradiologist and a neurobiologist without clinical information determined the incidence of normal, accentuated, and/or dilated VR spaces. Seven of 16 subjects with AD (approximately 44%) had dilated VR spaces in the centrum semiovale. No grossly abnormal spaces were present in the control subjects. Unusually large VR spaces are seen in at most 22% to 27% of MR scans in children with tension headaches and other psychiatric disorders, suggesting that the incidence of spaces of this type is greater in AD than in other abnormal populations. The origin and significance of this phenomenon remain unknown.

  19. Cluster Server IPTV dengan Penjadwalan Algoritma Round Robin

    Directory of Open Access Journals (Sweden)

    Didik Aribowo

    2016-03-01

    Full Text Available Perkembangan teknologi informasi yang pesat, otomatis seiring juga dengan meningkatnya para pengguna yang terhubung pada jaringan internet. Berawal dari sebuah single server yang selalu mendapatkan request dari banyak user, perlahan tapi pasti akan terjadi overload dan crash sehingga berdampak pada request yang tidak dapat dilayani oleh single server. Desain arsitektur cluster dapat dibangun dengan menggunakan konsep network load balancing yang memungkinkan proses pengolahan data di share ke dalam beberapa komputer. Dalam penelitian ini menggunakan algoritma penjadwalan round robin sebagai solusi alternatif mengatasi permasalah overload data pada server yang dapat mempengaruhi kinerja sistem IPTV. Untuk  jumlah request yang digunakan dalam penelitian ini adalah 5000, 15000, 25000, dan 50000 request. Dengan metode tersebut, maka performansi algoritma penjawalan dapat diamati dengan menekankan pada parameter sebagai berikut, yaitu throughput, respon time, reply connection, dan error connection sehingga didapatkan algoritma penjadwalan terbaik dalam rangka optimalisasi cluster server IPTV. Secara otomatis dalam proses load balancing mampu mengurangi beban kerja setiap server sehingga tidak ada server yang overload dan memungkinkan server  menggunakan bandwidth  yang tersedia secara lebih efektif serta menyediakan akses yang cepat ke web browser yang dihosting. Implementasi webserver cluster dengan skema load balancing dapat memberikan alvalaibilitas sistem yang tetap terjaga dan skalabilitas yang cukup untuk dapat tetap melayani setiap request dari pengguna

  20. Wind Turbine Gearbox Condition Monitoring Round Robin Study - Vibration Analysis

    Energy Technology Data Exchange (ETDEWEB)

    Sheng, S.

    2012-07-01

    The Gearbox Reliability Collaborative (GRC) at the National Wind Technology Center (NWTC) tested two identical gearboxes. One was tested on the NWTCs 2.5 MW dynamometer and the other was field tested in a turbine in a nearby wind plant. In the field, the test gearbox experienced two oil loss events that resulted in damage to its internal bearings and gears. Since the damage was not severe, the test gearbox was removed from the field and retested in the NWTCs dynamometer before it was disassembled. During the dynamometer retest, some vibration data along with testing condition information were collected. These data enabled NREL to launch a Wind Turbine Gearbox Condition Monitoring Round Robin project, as described in this report. The main objective of this project was to evaluate different vibration analysis algorithms used in wind turbine condition monitoring (CM) and find out whether the typical practices are effective. With involvement of both academic researchers and industrial partners, the project sets an example on providing cutting edge research results back to industry.

  1. Robins Air Force Base Solar Cogeneration Facility design

    Energy Technology Data Exchange (ETDEWEB)

    Pierce, B.L.; Bodenschatz, C.A.

    1982-06-01

    A conceptual design and a cost estimate have been developed for a Solar Cogeneration Facility at Robins Air Force Base. This demonstration solar facility was designed to generate and deliver electrical power and process steam to the existing base distribution systems. The facility was to have the potential for construction and operation by 1986 and make use of existing technology. Specific objectives during the DOE funded conceptual design program were to: prepare a Solar Cogeneration Facility (overall System) Specification, select a preferred configuration and develop a conceptual design, establish the performance and economic characteristics of the facility, and prepare a development plan for the demonstration program. The Westinghouse team, comprised of the Westinghouse Advanced Energy Systems Division, Heery and Heery, Inc., and Foster Wheeler Solar Development Corporation, in conjunction with the U.S. Air Force Logistics Command and Georgia Power Company, has selected a conceptual design for the facility that will utilize the latest DOE central receiver technology, effectively utilize the energy collected in the application, operate base-loaded every sunny day of the year, and be applicable to a large number of military and industrial facilities throughout the country. The design of the facility incorporates the use of a Collector System, a Receiver System, an Electrical Power Generating System, a Balance of Facility - Steam and Feedwater System, and a Master Control System.

  2. Tricistronic operon expression of the genes gcaD (tms), which encodes N-acetylglucosamine 1-phosphate uridyltransferase, prs, which encodes phosphoribosyl diphosphate synthetase, and ctc in vegetative cells of Bacillus subtilis

    DEFF Research Database (Denmark)

    Hilden, Ida; Krath, Britta N.; Hove-Jensen, Bjarne

    1995-01-01

    The gcaD, prs, and ctc genes were shown to be organized as a tricistronic operon. The transcription of the prs gene, measured as phosphoribosyl diphosphate synthetase activity, and of the ctc gene, measured as β-galactosidase activity specified by a ctc-lacZ protein fusion, were dependent...

  3. HAA1 and PRS3 overexpression boosts yeast tolerance towards acetic acid improving xylose or glucose consumption: unravelling the underlying mechanisms.

    Science.gov (United States)

    Cunha, Joana T; Costa, Carlos E; Ferraz, Luís; Romaní, Aloia; Johansson, Björn; Sá-Correia, Isabel; Domingues, Lucília

    2018-04-02

    Acetic acid tolerance and xylose consumption are desirable traits for yeast strains used in industrial biotechnological processes. In this work, overexpression of a weak acid stress transcriptional activator encoded by the gene HAA1 and a phosphoribosyl pyrophosphate synthetase encoded by PRS3 in a recombinant industrial Saccharomyces cerevisiae strain containing a xylose metabolic pathway was evaluated in the presence of acetic acid in xylose- or glucose-containing media. HAA1 or PRS3 overexpression resulted in superior yeast growth and higher sugar consumption capacities in the presence of 4 g/L acetic acid, and a positive synergistic effect resulted from the simultaneous overexpression of both genes. Overexpressing these genes also improved yeast adaptation to a non-detoxified hardwood hydrolysate with a high acetic acid content. Furthermore, the overexpression of HAA1 and/or PRS3 was found to increase the robustness of yeast cell wall when challenged with acetic acid stress, suggesting the involvement of the modulation of the cell wall integrity pathway. This study clearly shows HAA1 and/or, for the first time, PRS3 overexpression to play an important role in the improvement of industrial yeast tolerance towards acetic acid. The results expand the molecular toolbox and add to the current understanding of the mechanisms involved in higher acetic acid tolerance, paving the way for the further development of more efficient industrial processes.

  4. System upgradation for surface mode negative ion beam extraction experiments in ROBIN

    International Nuclear Information System (INIS)

    Pandya, Kaushal; Bansal, Gourab; Soni, Jignesh

    2015-01-01

    ROBIN (Replica Of BATMAN source in India) is a replica of BATMAN source of IPP, Garching. Plasma production (inductively coupled, RF produced plasma), plasma diagnostic (langmuir probe, optical emission spectroscopy), negative ion beam extraction in volume mode with reduced extraction area of 2 cm 2 (4 apertures) using small bench top type power supply (10kV, 400mA), with increase extraction area of 73 cm 2 (146 apertures) and using actual power supplies (Extraction Power Supply System, EPSS (11kV, 35A), and Accelerator Power Supply System, APSS (35kV, 15A)) and beam diagnostic etc have been performed successfully in ROBIN. This paper will describe the details of the system upgradation for surface mode negative ion experiments and its performance in ROBIN

  5. Round robin 'Impurities in uranium matrix': a success for CETAMA and IAEA

    International Nuclear Information System (INIS)

    Granier, Guy; Roudil, Daniele; Balsley, Steven Devry; Bulyha, Siarhei; Aregbe, Yetunde

    2012-01-01

    The safeguard of nuclear material is of paramount importance to the IAEA which increasingly uses this information for characterization purposes in order to strengthen the verification of declared nuclear material and to identify the origin of samples from mines. IAEA tasked CETAMA to conduct a round robin with objective to evaluate the capability of laboratories to measure impurities in uranium with concentration levels between 1 and 500 ppm relative to uranium. This round robin was attended by 17 international laboratories from the nuclear industry and safeguards community. The results are mainly obtained by ICP-MS and ICP-AES. The synthesis of this round robin were helpful in identifying anomalies and will allow the IAEA to better set realistic measurement performance targets for ICP-MS and ICP-AES. (authors)

  6. Spectral distribution of scalar particles created by a moving boundary with Robin boundary condition

    International Nuclear Information System (INIS)

    Mintz, B.; Farina, C; Maia Neto, P.A.; Rodrigues, R.B.

    2006-01-01

    We consider a massless scalar field in 1+1 dimensions satisfying a Robin boundary condition (BC) at a non-relativistic boundary. By deriving a Bogoliubov transformation between the input and output bosonic field operators, we calculate the spectral distribution of created particles. The particular cases of Dirichlet and Neumann BC may be obtained from our result as limiting cases, yielding equal spectra (this result is valid only in this space-time dimensionality). The creation effect for the field under Dirichlet BC turns out to be an upper bound for the spectra derived for Robin BC. Also, we show that the particle creation phenomenon with Robin conditions can be considerably reduced (with respect to the Dirichlet or Neumann cases) by selecting a particular mechanical oscillation frequency of the moving boundary. (author)

  7. Enhanced round robin CPU scheduling with burst time based time quantum

    Science.gov (United States)

    Indusree, J. R.; Prabadevi, B.

    2017-11-01

    Process scheduling is a very important functionality of Operating system. The main-known process-scheduling algorithms are First Come First Serve (FCFS) algorithm, Round Robin (RR) algorithm, Priority scheduling algorithm and Shortest Job First (SJF) algorithm. Compared to its peers, Round Robin (RR) algorithm has the advantage that it gives fair share of CPU to the processes which are already in the ready-queue. The effectiveness of the RR algorithm greatly depends on chosen time quantum value. Through this research paper, we are proposing an enhanced algorithm called Enhanced Round Robin with Burst-time based Time Quantum (ERRBTQ) process scheduling algorithm which calculates time quantum as per the burst-time of processes already in ready queue. The experimental results and analysis of ERRBTQ algorithm clearly indicates the improved performance when compared with conventional RR and its variants.

  8. West Nile virus infection in American Robins: new insights on dose response.

    Directory of Open Access Journals (Sweden)

    Kaci K VanDalen

    Full Text Available West Nile virus (WNV is a vector-borne pathogen that was first detected in the United States in 1999. The natural transmission cycle of WNV involves mosquito vectors and avian hosts, which vary in their competency to transmit the virus. American robins are an abundant backyard species in the United States and appear to have an important role in the amplification and dissemination of WNV. In this study we examine the response of American robins to infection with various WNV doses within the range of those administered by some natural mosquito vectors. Thirty American robins were assigned a WNV dosage treatment and needle inoculated with 10(0.95 PFU, 10(1.26 PFU, 10(2.15 PFU, or 10(3.15 PFU. Serum samples were tested for the presence of infectious WNV and/or antibodies, while oral swabs were tested for the presence of WNV RNA. Five of the 30 (17% robins had neutralizing antibodies to WNV prior to the experiment and none developed viremia or shed WNV RNA. The proportion of WNV-seronegative birds that became viremic after WNV inoculation increased in a dose dependent manner. At the lowest dose, only 40% (2/5 of the inoculated birds developed productive infections while at the highest dose, 100% (7/7 of the birds became viremic. Oral shedding of WNV RNA followed a similar trend where robins inoculated with the lower two doses were less likely to shed viral RNA (25% than robins inoculated with one of the higher doses (92%. Viremia titers and morbidity did not increase in a dose dependent manner; only two birds succumbed to infection and, interestingly, both were inoculated with the lowest dose of WNV. It is clear that the disease ecology of WNV is a complex interplay of hosts, vectors, and viral dose delivered.

  9. A Giant Heart Tumor in Neonate with Clinical Signs of Pierre - Robin Syndrome

    Science.gov (United States)

    Bejiqi, Ramush; Retkoceri, Ragip; Xhema-Bejiqi, Hana; Bejiqi, Rinor; Maloku, Arlinda

    2017-01-01

    Introduction: Pierre Robin syndrome is a congenital condition of facial abnormalities in humans. The three main features are: cleft palate, retrognathia and glossoptosis. Rarely heart tumors are associated with syndromes, mostly are isolated. Case report: In this presentation we describe a 3-weeks-old girl with Pierre-Robin syndrome and giant left ventricle tumor, diagnosed initially by transthoracic echocardiography. The purpose of this report is to review the literature on the fetuses and neonates with cardiac tumors in an attempt to determine the various ways which cardiac tumors differ clinically and morphologically in this age group. PMID:28790548

  10. The ATLAS ROBIN. A high-performance data-acquisition module

    Energy Technology Data Exchange (ETDEWEB)

    Kugel, Andreas

    2009-08-19

    This work presents the re-configurable processor ROBIN, which is a key element of the data-acquisition-system of the ATLAS experiment, located at the new LHC at CERN. The ATLAS detector provides data over 1600 channels simultaneously towards the DAQ system. The ATLAS dataflow model follows the ''PULL'' strategy in contrast to the commonly used ''PUSH'' strategy. The data volume transported is reduced by a factor of 10, however the data must be temporarily stored at the entry to the DAQ system. The input layer consists of approx. 160 ROS read-out units comprising 1 PC and 4 ROBIN modules. Each ROBIN device acquires detector data via 3 input channels and performs local buffering. Board control is done via a 64-bit PCI interface. Event selection and data transmission runs via PCI in the baseline bus-based ROS. Alternatively, a local GE interface can take over part or all of the data traffic in the switch-based ROS, in order to reduce the load on the host PC. The performance of the ROBIN module stems from the close cooperation of a fast embedded processor with a complex FPGA. The efficient task-distribution lets the processor handle all complex management functionality, programmed in ''C'' while all movement of data is performed by the FPGA via multiple, concurrently operating DMA engines. The ROBIN-project was carried-out by and international team and comprises the design specification, the development of the ROBIN hardware, firmware (VHDL and C-Code), host-code (C++), prototyping, volume production and installation of 700 boards. The project was led by the author of this thesis. The hardware platform is an evolution of a FPGA processor previously designed by the author. He has contributed elementary concepts of the communication mechanisms and the ''C''-coded embedded application software. He also organised and supervised the prototype and series productions including the various design reports and presentations. The results show that the ROBIN-module is able to meet

  11. The ATLAS ROBIN. A high-performance data-acquisition module

    International Nuclear Information System (INIS)

    Kugel, Andreas

    2009-01-01

    This work presents the re-configurable processor ROBIN, which is a key element of the data-acquisition-system of the ATLAS experiment, located at the new LHC at CERN. The ATLAS detector provides data over 1600 channels simultaneously towards the DAQ system. The ATLAS dataflow model follows the ''PULL'' strategy in contrast to the commonly used ''PUSH'' strategy. The data volume transported is reduced by a factor of 10, however the data must be temporarily stored at the entry to the DAQ system. The input layer consists of approx. 160 ROS read-out units comprising 1 PC and 4 ROBIN modules. Each ROBIN device acquires detector data via 3 input channels and performs local buffering. Board control is done via a 64-bit PCI interface. Event selection and data transmission runs via PCI in the baseline bus-based ROS. Alternatively, a local GE interface can take over part or all of the data traffic in the switch-based ROS, in order to reduce the load on the host PC. The performance of the ROBIN module stems from the close cooperation of a fast embedded processor with a complex FPGA. The efficient task-distribution lets the processor handle all complex management functionality, programmed in ''C'' while all movement of data is performed by the FPGA via multiple, concurrently operating DMA engines. The ROBIN-project was carried-out by and international team and comprises the design specification, the development of the ROBIN hardware, firmware (VHDL and C-Code), host-code (C++), prototyping, volume production and installation of 700 boards. The project was led by the author of this thesis. The hardware platform is an evolution of a FPGA processor previously designed by the author. He has contributed elementary concepts of the communication mechanisms and the ''C''-coded embedded application software. He also organised and supervised the prototype and series productions including the various design reports and presentations. The results show that the ROBIN-module is able to meet

  12. Sodium-glucose cotransporter 2 inhibition and health benefits: The Robin Hood effect.

    Science.gov (United States)

    Kalra, Sanjay; Jain, Arpit; Ved, Jignesh; Unnikrishnan, A G

    2016-01-01

    This review discusses two distinct, yet related, mechanisms of sodium-glucose cotransporter 2 (SGLT2) inhibition: Calorie restriction mimicry (CRM) and pro-ketogenic effect, which may explain their cardiovascular benefits. We term these adaptive CRM and pro-ketogenic effects of SGLT2 inhibition, the Robin Hood hypothesis. In English history, Robin Hood was a "good person," who stole from the rich and helped the poor. He supported redistribution of resources as he deemed fit for the common good. In a similar fashion, SGLT2 inhibition provides respite to the overloaded glucose metabolism while utilizing lipid stores for energy production.

  13. The ATLAS ROBIN. A high-performance data-acquisition module

    Energy Technology Data Exchange (ETDEWEB)

    Kugel, Andreas

    2009-08-19

    This work presents the re-configurable processor ROBIN, which is a key element of the data-acquisition-system of the ATLAS experiment, located at the new LHC at CERN. The ATLAS detector provides data over 1600 channels simultaneously towards the DAQ system. The ATLAS dataflow model follows the ''PULL'' strategy in contrast to the commonly used ''PUSH'' strategy. The data volume transported is reduced by a factor of 10, however the data must be temporarily stored at the entry to the DAQ system. The input layer consists of approx. 160 ROS read-out units comprising 1 PC and 4 ROBIN modules. Each ROBIN device acquires detector data via 3 input channels and performs local buffering. Board control is done via a 64-bit PCI interface. Event selection and data transmission runs via PCI in the baseline bus-based ROS. Alternatively, a local GE interface can take over part or all of the data traffic in the switch-based ROS, in order to reduce the load on the host PC. The performance of the ROBIN module stems from the close cooperation of a fast embedded processor with a complex FPGA. The efficient task-distribution lets the processor handle all complex management functionality, programmed in ''C'' while all movement of data is performed by the FPGA via multiple, concurrently operating DMA engines. The ROBIN-project was carried-out by and international team and comprises the design specification, the development of the ROBIN hardware, firmware (VHDL and C-Code), host-code (C++), prototyping, volume production and installation of 700 boards. The project was led by the author of this thesis. The hardware platform is an evolution of a FPGA processor previously designed by the author. He has contributed elementary concepts of the communication mechanisms and the ''C''-coded embedded application software. He also organised and supervised the prototype and series productions including the various design

  14. Sodium-glucose cotransporter 2 inhibition and health benefits: The Robin Hood effect

    Directory of Open Access Journals (Sweden)

    Sanjay Kalra

    2016-01-01

    Full Text Available This review discusses two distinct, yet related, mechanisms of sodium-glucose cotransporter 2 (SGLT2 inhibition: Calorie restriction mimicry (CRM and pro-ketogenic effect, which may explain their cardiovascular benefits. We term these adaptive CRM and pro-ketogenic effects of SGLT2 inhibition, the Robin Hood hypothesis. In English history, Robin Hood was a "good person," who stole from the rich and helped the poor. He supported redistribution of resources as he deemed fit for the common good. In a similar fashion, SGLT2 inhibition provides respite to the overloaded glucose metabolism while utilizing lipid stores for energy production.

  15. Laryngeal mask airway guided tracheal intubation in a neonate with the Pierre Robin syndrome

    DEFF Research Database (Denmark)

    Hansen, Tom Giedsing; Joensen, Henning; Henneberg, Steen Winther

    1995-01-01

    Endotracheal intubation in infants with the Pierre Robin syndrome may sometimes be impossible to accomplish by conventional means. To aid difficult tracheal intubation many different techniques have been described. We present a case, in which we successfully intubated a small-for-date newborn boy...... with the Pierre Robin syndrome by using a modified laryngeal mask airway (no. 1) as a guide for the endotracheal tube. The technique is easy to perform, less traumatic and less time-consuming than multiple attempts at laryngoscopy or blind tracheal intubation....

  16. Non syndromic Pierre Robin sequence: On the lookout for breathing difficulty

    Directory of Open Access Journals (Sweden)

    Meryl S Parekkat

    2012-01-01

    Full Text Available A full-term vigorous baby male, was born at term. His micrognathia and cleft palate were immediately apparent but there was no clinical evidence of upper airway obstruction. Feeding was commenced with no initial problems. Prior to discharge on day 7 he was reviewed and found to be well and without upper airway obstruction. On day 42 of life he arrived with failure to thrive.

  17. Scheduling double round-robin tournaments with divisional play using constraint programming

    Energy Technology Data Exchange (ETDEWEB)

    Carlsson, Mats; Johansson, Mikael; Larson, Jeffrey

    2017-06-01

    We study a tournament format that extends a traditional double round-robin format with divisional single round-robin tournaments. Elitserien, the top Swedish handball league, uses such a format for its league schedule. We present a constraint programming model that characterizes the general double round-robin plus divisional single round-robin format. This integrated model allows scheduling to be performed in a single step, as opposed to common multistep approaches that decompose scheduling into smaller problems and possibly miss optimal solutions. In addition to general constraints, we introduce Elitserien-specific requirements for its tournament. These general and league-specific constraints allow us to identify implicit and symmetry-breaking properties that reduce the time to solution from hours to seconds. A scalability study of the number of teams shows that our approach is reasonably fast for even larger league sizes. The experimental evaluation of the integrated approach takes considerably less computational effort to schedule Elitserien than does the previous decomposed approach. (C) 2016 Elsevier B.V. All rights reserved

  18. Laboratory investigation of bitumen based on round robin DSC and AFM tests

    NARCIS (Netherlands)

    Soenen, H.; Besamusca, J.; Fischer, H.R.; Poulikakos, L.D.; Planche, J.P.; Das, P.K.; Kringos, N.; Grenfell, J.R.A.; Lu, X.; Chailleux, E.

    2014-01-01

    In the past years a wide discussion has been held among asphalt researchers regarding the existence and interpretation of observed microstructures on bitumen surfaces. To investigate this, the RILEM technical committee on nano bituminous materials 231-NBM has conducted a round robin study combining

  19. Using a classic paper by Robin Fahraeus and Torsten Lindqvist to teach basic hemorheology

    DEFF Research Database (Denmark)

    Toksvang, Linea Natalie; Berg, Ronan M G

    2013-01-01

    "The viscosity of the blood in narrow capillary tubes" by Robin Fåhraeus and Torsten Lindqvist (Am J Physiol 96: 562-568, 1931) can be a valuable opportunity for teaching basic hemorheological principles in undergraduate cardiovascular physiology. This classic paper demonstrates that a progressive...

  20. Lq-solution of the Robin problem for the Oseen system

    Czech Academy of Sciences Publication Activity Database

    Medková, Dagmar

    2016-01-01

    Roč. 142, č. 1 (2016), s. 61-79 ISSN 0167-8019 Institutional support: RVO:67985840 Keywords : Oseen equations * Robin problem * single layer potential Subject RIV: BA - General Mathematics Impact factor: 0.702, year: 2016 http://link.springer.com/article/10.1007%2Fs10440-015-0014-5

  1. $L^q$-solution of the Neumann, Robin and transmission problem for the scalar Oseen equation

    Czech Academy of Sciences Publication Activity Database

    Medková, Dagmar

    2018-01-01

    Roč. 291, č. 4 (2018), s. 682-698 ISSN 0025-584X R&D Projects: GA ČR GA16-03230S Institutional support: RVO:67985840 Keywords : generalized jump problem * Neumann problem * Robin problem Subject RIV: BA - General Mathematics OBOR OECD: Pure mathematics Impact factor: 0.742, year: 2016

  2. Asymptotic eigenvalue estimates for a Robin problem with a large parameter

    Czech Academy of Sciences Publication Activity Database

    Exner, Pavel; Minakov, A.; Parnovski, L.

    2014-01-01

    Roč. 71, č. 2 (2014), s. 141-156 ISSN 0032-5155 R&D Projects: GA ČR(CZ) GA14-06818S Institutional support: RVO:61389005 Keywords : Laplacian * Robin problem * eigenvalue asymptotics Subject RIV: BE - Theoretical Physics Impact factor: 0.250, year: 2014

  3. Summary of results from the IPIRG-2 round-robin analyses

    International Nuclear Information System (INIS)

    Rahman, S.; Olson, R.; Rosenfield, A.; Wilkowski, G.

    1996-02-01

    This report presents a summary of the results from three one-day international round-robin workshops which were organized by Battelle in conjunction with the Second International Piping Integrity Research Group (IPIRG-2) Program. The objective of these workshops was to develop a consensus in handling difficult analytical problems in leak-before-break and pipe flaw evaluations. The workshops, which were held August 5, 1993, March 4, 1994, and October 21, 1994 at Columbus, Ohio, involved various technical presentations on the related research efforts by the IPIRG-2 member organizations and solutions to several round-robin problems. Following review by the IPIRG-2 members, four sets of round-robin problems were developed. They involved: (1) evaluations of fracture properties and pipe loads, (2) crack-opening and leak-rate evaluations, (3) dynamic analysis of cracked pipes, and (4) evaluations of elbows. A total of 18 organizations from the United States, Japan, Korea, and Europe solved these round-robin problems. The analysis techniques employed by the participants included both finite element and engineering methods. Based on the results from these analyses, several important observations were made concerning the predictive capability of the current fracture-mechanics and thermal-hydraulics models for their applications in nuclear piping and piping welds

  4. Multi-Level Round-Robin Multicast Scheduling with Look-Ahead Mechanism

    DEFF Research Database (Denmark)

    Yu, Hao; Ruepp, Sarah Renée; Berger, Michael Stübert

    2011-01-01

    constructs the Traffic Matrix before each cell transmission based on the fan-out vectors of the cells in the queues. A scheduling pointer independently moves on each column of the Traffic Matrix in a round-robin fashion and returns the decision to the Decision Matrix. The sync procedure is carried out...

  5. Results of the LIRES Round Robin test on high temperature reference electrodes for LWR applications

    Energy Technology Data Exchange (ETDEWEB)

    Bosch, R.W. [SCK.CEN, Nuclear Research Centre Belgium, Boeretang 200, B-2400 Mol (Belgium); Nagy, G. [Magyar Tudomanyos Akademia KFKI Atomenergia Kutatointezet, AEKI, Konkoly Thege ut 29-33, 1121 Budapest (Hungary); Feron, D. [CEA Saclay, 91191 Gif-Sur-Yvette Cedex (France); Navas, M. [CIEMAT, Edificio 30, Dpto. Fision Nuclear, Avda. Complutense 22, 28040 Madrid, (Spain); Bogaerts, W. [KU Leuven, Kasteelpark Arenberg 31, B-3001 Leuven (Belgium); Karnik, D. [Nuclear Research Institute, NRI, Rez (Czech Republic); Dorsch, T. [Framatone ANP, Inc., Charlotte, North Carolina (United States); Molander, A. [Studsvik AB SE-611 82 Nykoeping (Sweden); Maekelae, K. [Materials and Structural Integrity, VTT Technical Research Centre of Finland, Kemistintie 3, P.O. Box 1704, FIN-02044 VTT (Finland)

    2004-07-01

    A European sponsored research project has been started on 1 October 2000 to develop high temperature reference electrodes that can be used for in-core electrochemical measurements in Light Water Reactors (LWR's). This LIRES-project (Development of Light Water Reactor Reference Electrodes) consists of 9 partners (SCK-CEN, AEKI, CEA, CIEMAT, KU Leuven, NRI Rez, Framatone ANP, Studsvik Nuclear and VTT) and will last for four years. The main objective of this LIRES project is to develop a reference electrode, which is robust enough to be used inside a LWR. Emphasize is put on the radiation hardness of both the mechanical design of the electrode as the proper functioning of the electrode. A four steps development trajectory is foreseen: (1) To set a testing standard for a Round Robin, (2) To develop different reference electrodes, (3) To perform a Round Robin test of these reference electrodes followed by selection of the best reference electrode(s), (4) To perform irradiation tests under appropriate LWR conditions in a Material Test Reactor (MTR). Four different high temperature reference electrodes have been developed and are being tested in a Round Robin test. These electrodes are: A Ceramic Membrane Electrode (CME), a Rhodium electrode, an external Ag/AgCl electrode and a Palladium electrode. The presentation will focus on the results obtained with the Round Robin test. (authors)

  6. The ATLAS ROBIN – A High-Performance Data-Acquisition Module

    CERN Document Server

    Kugel, Andreas

    2009-01-01

    This work presents the re-configurable processor ROBIN, which is a key element of the data-acquisition-system of the ATLAS experiment, located at the new LHC at CERN. The ATLAS detector provides data over 1600 channels simultaneously towards the DAQ system. The ATLAS dataflow model follows the “PULL” strategy in contrast to the commonly used “PUSH” strategy. The data volume transported is reduced by a factor of 10, however the data must be temporarily stored at the entry to the DAQ system. The input layer consists of approx. 160 ROS read-out units comprising 1 PC and 4 ROBIN modules. Each ROBIN device acquires detector data via 3 input channels and performs local buffering. Board control is done via a 64-bit PCI interface. Event selection and data transmission runs via PCI in the baseline bus-based ROS. Alternatively, a local GE interface can take over part or all of the data traffic in the switch-based ROS, in order to reduce the load on the host PC. The performance of the ROBIN module stems from the...

  7. Preliminary results of the round-robin testing of F82H

    Energy Technology Data Exchange (ETDEWEB)

    Shiba, K.; Yamanouchi, N.; Tohyama, A.

    1996-10-01

    Preliminary results of metallurgical, physical and mechanical properties of low activation ferritic steel F82H (IEA heat) were obtained in the round-robin test in Japan. The properties of IEA heat F82H were almost the same as the original F82H.

  8. Nudging Fledgling Teen Readers from the Nest: From Round Robin to Real Reading

    Science.gov (United States)

    Fair, Ginni Chase; Combs, Dorie

    2011-01-01

    Middle and Secondary teachers often find it difficult to help their students read textbooks and other instructional materials. In order to ensure they read the text, teachers may rely on "round robin reading" and other ineffective strategies. In this article, the authors explain why this strategy hinders comprehension, fluency and development of…

  9. Bounds and extremal domains for Robin eigenvalues with negative boundary parameter

    Czech Academy of Sciences Publication Activity Database

    Antunes, P. R. S.; Freitas, P.; Krejčiřík, David

    2017-01-01

    Roč. 10, č. 4 (2017), s. 357-379 ISSN 1864-8258 R&D Projects: GA ČR(CZ) GA14-06818S Institutional support: RVO:61389005 Keywords : Eigenvalue optimisation * Robin Laplacian * negative boundary parameter * Bareket's conjecture Subject RIV: BA - General Mathematics OBOR OECD: Pure mathematics Impact factor: 1.182, year: 2016

  10. Preparation of irritant polymer samples for an in vitro round robin study.

    NARCIS (Netherlands)

    Coleman, Kelly P; Grailer, Thomas P; McNamara, Lori R; Rollins, Beau L; Christiano, Nicholas J; Kandárová, Helena; De Jong, Wim H

    2018-01-01

    A round robin study using reconstructed human epidermis (RhE) tissues was conducted to test medical device polymer extracts for skin irritation potential. Test samples were four irritant and three non-irritant medical device polymers. Five of these polymer samples were developed and two were

  11. Análise de convergência espacial dos repasses da Lei Robin Hood Spatial convergence analysis of tax transfers from the Robin Hood Act

    Directory of Open Access Journals (Sweden)

    Noé Gonçalves Maranduba Júnior

    2009-12-01

    Full Text Available Alega-se que a Lei Robin Hood tem permitido uma melhor distribuição dos valores do ICMS devidos aos municípios do estado de Minas Gerais. O objetivo deste artigo é investigar se essa lei, entre os anos de 2001 e 2005, realmente foi eficaz, isto é, se, em termos relativos, municípios pobres receberam mais dessas transferências do que os municípios ricos. Para fazer isso metodologicamente, implementa-se uma análise exploratória de dados espaciais e uma análise de convergência, para verificar se as disparidades nos repasses diminuíram com o passar do tempo. Os resultados mostraram que os efeitos espaciais importaram nas análises e que não houve um efeito redistributivo dos repasses, considerando-se que o coeficiente indicador de convergência não foi significativo.One alleges that the Robin Hood Act has allowed one better distribution of the values of ICMS to municipalities of the state of Minas Gerais. The paper is aimed at verifying if the Robin Hood Act has actually revealed a redistributive effect in tax transfers to municipalities in the state over the period 2001-2005, that is, if, in relative terms, poor municipalities have received more these transfers than rich ones. In doing methodologically so, an exploratory spatial data analysis and a convergence analysis are implemented to verify if the disparities of tax redistribution have diminished over the time. The findings showed that the spatial effects were important in the analysis as well as there was no redistributive effect in the period because the convergence coefficient was not significant.

  12. Results of the round robin exercise on IV-measurements of classic Si-solar cells

    Energy Technology Data Exchange (ETDEWEB)

    Van der Borg, N.J.C.M. [ECN Solar Energy, Petten (Netherlands)

    2012-12-15

    A round robin exercise was performed on IV measurements and spectral response measurements of solar cells. Seven partners participated in the exercise. The aim of the round robin was to enable the verification of their measurement facilities and procedures for IV-measurements on 'classic' Si-solar cells by comparing their measurement data with the other participants. In this way possible flaws in the equipment or procedures can be found and corrected for or the measurement uncertainties can be reassessed. The differences between the measurement results of the various partners were more or less within the expected measurement uncertainty although one or more partners may decide to use the results to reexamine their facilities or procedures.

  13. Round Robin Posttest analysis of a 1/10-scale Steel Containment Vessel Model Test

    International Nuclear Information System (INIS)

    Komine, Kuniaki; Konno, Mutsuo

    1999-01-01

    NUPEC and U.S. Nuclear Regulatory Commission (USNRC) have been jointly sponsoring 'Structural Behavior Test' at Sandia National Laboratory (SNL) in Cooperative Containment Research Program'. As one of the test, a test of a mixed scaled SCV model with 1/10 in the geometry and 1/4 in the shell thickness. Round Robin analyses of a 1/10-scale Steel Containment Vessel (SCV) Model Test were carried out to obtain an adequate analytical method among seven organizations belonged to five countries in the world. As one of sponsor, Nuclear Power Engineering Corporation (NUPEC) filled the important role of a posttest analysis of SCV model. This paper describes NUPEC's analytical results in the round robin posttest analysis. (author)

  14. Round Robin Posttest analysis of a 1/10-scale Steel Containment Vessel Model Test

    Energy Technology Data Exchange (ETDEWEB)

    Komine, Kuniaki [Nuclear Power Engineering Corp., Tokyo (Japan); Konno, Mutsuo

    1999-07-01

    NUPEC and U.S. Nuclear Regulatory Commission (USNRC) have been jointly sponsoring 'Structural Behavior Test' at Sandia National Laboratory (SNL) in Cooperative Containment Research Program'. As one of the test, a test of a mixed scaled SCV model with 1/10 in the geometry and 1/4 in the shell thickness. Round Robin analyses of a 1/10-scale Steel Containment Vessel (SCV) Model Test were carried out to obtain an adequate analytical method among seven organizations belonged to five countries in the world. As one of sponsor, Nuclear Power Engineering Corporation (NUPEC) filled the important role of a posttest analysis of SCV model. This paper describes NUPEC's analytical results in the round robin posttest analysis. (author)

  15. Domestic round robin exercise on analysis of uranium for nuclear material handling facilities in Japan

    International Nuclear Information System (INIS)

    Kato, Yoshiyasu; Nagai, Kohta; Handa, Takamitsu; Inoue, Shin-ichi; Sato, Yoshihiro

    2016-01-01

    Interlaboratory comparison programme as well as internal quality control system is an effective tool for an analytical laboratory responsible to nuclear material accountancy of a nuclear facility to maintain and enhance its capability for analysis. However, it is a burden on nuclear material handling facilities in Japan to attend interlaboratory comparison programme run by overseas institutions because of high costs and complicated procedure for importing nuclear materials, and therefore facilities which can participate in such international programme would be limited. Nuclear Material Control Center has hence started and organised an annual domestic round robin exercise on analysis of uranium standard materials, funded by the Japan Safeguards Office of the Nuclear Regulation Authority, since 2008 to enhance analytical capability of Japanese Facilities. The outline of the round robin exercise will be given and the results of uranium isotopic and concentration analysis reported by participant facilities from 2008 to 2015 will be summarised in the presentation. (author)

  16. Results of ASTM round robin testing for mode 1 interlaminar fracture toughness of composite materials

    Science.gov (United States)

    Obrien, T. Kevin; Martin, Roderick H.

    1992-01-01

    The results are summarized of several interlaboratory 'round robin' test programs for measuring the mode 1 interlaminar fracture toughness of advanced fiber reinforced composite materials. Double Cantilever Beam (DCB) tests were conducted by participants in ASTM committee D30 on High Modulus Fibers and their Composites and by representatives of the European Group on Fracture (EGF) and the Japanese Industrial Standards Group (JIS). DCB tests were performed on three AS4 carbon fiber reinforced composite materials: AS4/3501-6 with a brittle epoxy matrix; AS4/BP907 with a tough epoxy matrix; and AS4/PEEK with a tough thermoplastic matrix. Difficulties encountered in manufacturing panels, as well as conducting the tests are discussed. Critical issues that developed during the course of the testing are highlighted. Results of the round robin testing used to determine the precision of the ASTM DCB test standard are summarized.

  17. First Total Reflection X-Ray Fluorescence round-robin test of water samples: Preliminary results

    Energy Technology Data Exchange (ETDEWEB)

    Borgese, Laura; Bilo, Fabjola [Chemistry for Technologies Laboratory, University of Brescia, Brescia (Italy); Tsuji, Kouichi [Graduate School of Engineering, Osaka City University, Osaka (Japan); Fernández-Ruiz, Ramón [Servicio Interdepartamental de Investigación (SIdI), Laboratorio de TXRF, Universidad Autónoma de Madrid, Madrid (Spain); Margui, Eva [Department of Chemistry, University of Girona, Girona (Spain); Streli, Christina [TU Wien, Atominstitut,Radiation Physics, Vienna (Austria); Pepponi, Giancarlo [Fondazione Bruno Kessler, Povo, Trento (Italy); Stosnach, Hagen [Bruker Nano GmbH, Berlin (Germany); Yamada, Takashi [Rigaku Corporation, Takatsuki, Osaka (Japan); Vandenabeele, Peter [Department of Archaeology, Ghent University, Ghent (Belgium); Maina, David M.; Gatari, Michael [Institute of Nuclear Science and Technology, University of Nairobi, Nairobi (Kenya); Shepherd, Keith D.; Towett, Erick K. [World Agroforestry Centre (ICRAF), Nairobi (Kenya); Bennun, Leonardo [Laboratorio de Física Aplicada, Departamento de Física, Universidad de Concepción (Chile); Custo, Graciela; Vasquez, Cristina [Gerencia Química, Laboratorio B025, Centro Atómico Constituyentes, San Martín (Argentina); Depero, Laura E., E-mail: laura.depero@unibs.it [Chemistry for Technologies Laboratory, University of Brescia, Brescia (Italy)

    2014-11-01

    Total Reflection X-Ray Fluorescence (TXRF) is a mature technique to evaluate quantitatively the elemental composition of liquid samples deposited on clean and well polished reflectors. In this paper the results of the first worldwide TXRF round-robin test of water samples, involving 18 laboratories in 10 countries are presented and discussed. The test was performed within the framework of the VAMAS project, interlaboratory comparison of TXRF spectroscopy for environmental analysis, whose aim is to develop guidelines and a standard methodology for biological and environmental analysis by means of the TXRF analytical technique. - Highlights: • The discussion of the first worldwide TXRF round-robin test of water samples (18 laboratories of 10 countries) is reported. • Drinking, waste, and desalinated water samples were tested. • Data dispersion sources were identified: sample concentration, preparation, fitting procedure, and quantification. • The protocol for TXRF analysis of drinking water is proposed.

  18. Acoustic noise measurements on a wind turbine performed in the frame of the NIWT round robin

    International Nuclear Information System (INIS)

    Van der Borg, N.J.C.M.; Vink, P.W.

    1996-11-01

    A round robin acoustic measurement campaign has been performed by five project partners using one and the same wind turbine (WT). The measurement procedure for the round robin exercise was agreed to be in compliance with the IEA-recommended practices on WT-noise emission measurements and the measured characteristics were agreed to be the apparent sound power level and the tonality, both measured at the reference measurement position. The measurements performed by ECN resulted in an A-weighted sound power level of the TACKE TW500/37 wind turbine in Hooksiel, Germany, of 95.8 dB(A) at a wind speed of 5.5 m/s at reference conditions. The tonality assessment of the sound pressure at 50 m down wind of the turbine resulted in a difference between the maximum tone level and the masking noise level of 2.4 dB. This characterizes the noise as 'prominent'. 2 refs

  19. Environmental Assessment for Developing Renewable Energy Enhanced Use Lease Facilities at Robins Air Force Base

    Science.gov (United States)

    2013-12-15

    geothermal sources were eliminated because of insufficient sources of energy. Wind power using turbines was eliminated because the average wind speed in...Warner Robins, Georgia is 8 kph (5 mph), and wind turbines are typically not cost-effective in areas with average wind speeds below 12.9-16.1 kph (8...20  Table 3-2. Bird Species of Pine and Pine/Mixed Hardwood Habitats ...................... 31  Table 3-3. Archaeological Sites

  20. Multiple and sign-changing solutions for discrete Robin boundary value problem with parameter dependence

    Directory of Open Access Journals (Sweden)

    Long Yuhua

    2017-12-01

    Full Text Available In this paper, we study second-order nonlinear discrete Robin boundary value problem with parameter dependence. Applying invariant sets of descending flow and variational methods, we establish some new sufficient conditions on the existence of sign-changing solutions, positive solutions and negative solutions of the system when the parameter belongs to appropriate intervals. In addition, an example is given to illustrate our results.

  1. Optimisation of the Lowest Robin Eigenvalue in the Exterior of a Compact Set

    Czech Academy of Sciences Publication Activity Database

    Krejčiřík, David; Lotoreichik, Vladimir

    2018-01-01

    Roč. 25, č. 1 (2018), s. 319-337 ISSN 0944-6532 R&D Projects: GA ČR GA17-01706S Institutional support: RVO:61389005 Keywords : Robin Laplacian * negative boundary parameter * exterior of a convex set * spectral isoperimetric inequality * spectral isochoric inequality * parallel coordinates Subject RIV: BA - General Mathematics OBOR OECD: Pure mathematics Impact factor: 0.496, year: 2016

  2. PRIMITIVE MATRICES AND GENERATORS OF PSEUDO RANDOM SEQUENCES OF GALOIS

    Directory of Open Access Journals (Sweden)

    A. Beletsky

    2014-04-01

    Full Text Available In theory and practice of information cryptographic protection one of the key problems is the forming a binary pseudo-random sequences (PRS with a maximum length with acceptable statistical characteristics. PRS generators are usually implemented by linear shift register (LSR of maximum period with linear feedback [1]. In this paper we extend the concept of LSR, assuming that each of its rank (memory cell can be in one of the following condition. Let’s call such registers “generalized linear shift register.” The research goal is to develop algorithms for constructing Galois and Fibonacci generalized matrix of n-order over the field , which uniquely determined both the structure of corresponding generalized of n-order LSR maximal period, and formed on their basis Galois PRS generators of maximum length. Thus the article presents the questions of formation the primitive generalized Fibonacci and Galois arbitrary order matrix over the prime field . The synthesis of matrices is based on the use of irreducible polynomials of degree and primitive elements of the extended field generated by polynomial. The constructing methods of Galois and Fibonacci conjugated primitive matrices are suggested. The using possibilities of such matrices in solving the problem of constructing generalized generators of Galois pseudo-random sequences are discussed.

  3. Progress report on a NDT round robin on austenitic circumferential pipe welds

    International Nuclear Information System (INIS)

    Brast, G.; Maier, H.J.; Knoch, P.; Mletzko, U.

    1998-01-01

    The objective of the project is establish on the basis of Round Robin tests the current state of efficiency of various, defined testing methods, so that required or achievable optimizations can be defined and made. The project work up to date encompasses mon-destructive examinations of 15 austenitic welds with nominal widths DN 150/200/250 and wall thicknesses from 8 to 18 mm. Except for one test piece, (elbow/elbow), the joining welds are straight pipe to elbow welds. The results of the Round Robin tests show that the NDE detection limits for the fault examined (intercrystalline stress corrosion cracking) are in the range assumed so far, i.e. from about 20 to 25% of the wall thickness to be examined. The defect detection rates of the ultrasonic test methods applied are approx. 70% and thus are about equal in achievement with comparable international Round Robin tests (PISC; ASME/PDI, ENIQ, etc.). Clearly better are the fault detection rates of radiography. Evaluation of the individual results indicates the detection limits can be improved, by 1. reducing the misalignment of edges, 2. grinding of welds, 3. avoiding sharp notches at the root, 4. producing coaxial surfaces. (orig./CB) [de

  4. Nordic numerical round robin for a side-grooved ct-specimen

    International Nuclear Information System (INIS)

    Talja, H.

    1989-11-01

    The reliability of fracture mechanics assessments based on finite element method calculations has to be confirmed before making safety assessments for critical components like nuclear pressure vessels. Calculations for simulation of fracture mechanics tests and numerical round robin programmes are useful methods in such verification. In this report the results of Nordic finite element round robin calculations for a side-grooved CT-specimen are presented and compared with experimental results. The round robin consisted of two parts. In the first part two-dimensional calculations assuming plane strain and plane stress behaviour were made. In the second part extensive three-dimensional calculations were performed for best-estimate analysis of the specimen behaviour. The differences between the solutions were comparatively small. Only one two-dimensional solution, where lower order finite elements were used, deviated clearly from the other ones. A good agreement was seen between two-dimensional plane strain results and experimental results. Three-dimensional calculations corresponded very accurately with each others and the experiment

  5. Don Quixote, Machiavelli, and Robin Hood: public health practice, past and present.

    Science.gov (United States)

    Mullan, F

    2000-05-01

    Since the mid-19th century, when the first formal health departments were established in the United States, commissioners, directors, and secretaries of public health have functioned as senior members of the staffs of public executives, mayors, governors, and presidents. They have provided important political, managerial, and scientific leadership to agencies of government that have played increasingly important roles in national life, from the sanitary revolution of the 19th century to the prevention of HIV/AIDS and the control of tobacco use today. Although public health officials come from a variety of backgrounds and oversee agencies of varied size and composition, there are philosophical themes that describe and define the commonality of their work. These themes are captured metaphorically by 3 celebrated figures: Don Quixote, Machiavelli, and Robin Hood. By turns, the public health official functions as a determined idealist (Don Quixote), a cunning political strategist (Machiavelli), and an agent who redistributes resources from the wealthier sectors of society to the less well off (Robin Hood.) All 3 personae are important, but, it is argued, Robin Hood is the most endangered.

  6. First results from negative ion beam extraction in ROBIN in surface mode

    Science.gov (United States)

    Pandya, Kaushal; Gahlaut, Agrajit; Yadav, Ratnakar K.; Bhuyan, Manas; Bandyopadhyay, Mainak; Das, B. K.; Bharathi, P.; Vupugalla, Mahesh; Parmar, K. G.; Tyagi, Himanshu; Patel, Kartik; Bhagora, Jignesh; Mistri, Hiren; Prajapati, Bhavesh; Pandey, Ravi; Chakraborty, Arun. K.

    2017-08-01

    ROBIN, the first step in the Indian R&D program on negative ion beams has reached an important milestone, with the production of negative ions in the surface conversion mode through Cesium (Cs) vapor injection into the source. In the present set-up, negative hydrogen ion beam extraction is effected through an extraction area of ˜73.38 cm2 (146 apertures of 8mm diameter). The three grid electrostatic accelerator system of ROBIN is fed by high voltage DC power supplies (Extraction Power Supply System: 11kV, 35A and Acceleration Power Supply System: 35kV, 15A). Though, a considerable reduction of co-extracted electron current is usually observed during surface mode operation, in order to increase the negative ion current, various other parameters such as plasma grid temperature, plasma grid bias, extraction to acceleration voltage ratio, impurity control and Cs recycling need to be optimized. In the present experiments, to control and to understand the impurity behavior, a Cryopump (14,000 l/s for Hydrogen) is installed along with a Residual Gas Analyzer (RGA). To characterize the source plasma, two sets of Langmuir probes are inserted through the diagnostic flange ports available at the extraction plane. To characterize the beam properties, thermal differential calorimeter, Doppler Shift Spectroscopy and electrical current measurements are implemented in ROBIN. In the present set up, all the negative ion beam extraction experiments have been performed by varying different experimental parameters e.g. RF power (30-70 kW), source operational pressure (0.3 - 0.6Pa), plasma grid bias voltage, extraction & acceleration voltage combination etc. The experiments in surface mode operation is resulted a reduction of co-extracted electron current having electron to ion ratio (e/i) ˜2 whereas the extracted negative ion current density was increased. However, further increase in negative ion current density is expected to be improved after a systematic optimization of the

  7. Generation of pseudo-random sequences for spread spectrum systems

    Science.gov (United States)

    Moser, R.; Stover, J.

    1985-05-01

    The characteristics of pseudo random radio signal sequences (PRS) are explored. The randomness of the PSR is a matter of artificially altering the sequence of binary digits broadcast. Autocorrelations of the two sequences shifted in time, if high, determine if the signals are the same and thus allow for position identification. Cross-correlation can also be calculated between sequences. Correlations closest to zero are obtained with large volume of prime numbers in the sequences. Techniques for selecting optimal and maximal lengths for the sequences are reviewed. If the correlations are near zero in the sequences, then signal channels can accommodate multiple users. Finally, Gold codes are discussed as a technique for maximizing the code lengths.

  8. The Robin, Erithacus Rubecula (Passeriformes, Turdidae, as a Component of Heterotrophic Consortia of Forest Cenoses, Northeast Ukraine. Part 2

    Directory of Open Access Journals (Sweden)

    Chaplygina A. B.

    2016-12-01

    Full Text Available The role of the robin as a determinant of heterotrophic consortia is considered. The robin is a consort of determinants of autotrophic consortia, which core is represented mostly by dominating species of deciduous trees (Quercus robur Linnaeus, 1753, Tilia cordata Miller, 1768, Acer platanoides Linnaeus, 1753, Acer campestre Linnaeus, 1753, and also by sedges (Carex sp. and grasses (Poaceae, connected with the determinants by fabric links. The robin also belongs to the concentr of the second and higher orders as a component of forest biogeocenoses and it is also the main determinant in species composition of the insects inhabiting bird nests. As a result of the taxonomic analysis of invertebrates in the robin nests, it has been found out that the most numerous class was Insecta (9 orders and 27 families, with the dominance of Coleoptera (30.7 %. The nidicolous fauna of the robin (38 species was dominated by zoophages along with parasites and hematophages such as Hippoboscidae (46.4 %. The percentage of phytophages and saprophages among the invertebrate nest inhabitants was somewhat less (21 % each, then followed necrophages (12 %. Zoophages and parasites also dominated according to the number of objects in the nests (42 %; n = 150, the less was the portion of phytophages (34 %, saprophages (18 %, and necrophages (6 %. The highest number of species and objects of zoophages was recorded for climax and mature biocenoses (oak forests in NNP “HL” and pine cenoses in NNP “H””.

  9. Results of the International Energy Agency Round Robin on Fast Pyrolysis Bio-oil Production

    Energy Technology Data Exchange (ETDEWEB)

    Elliott, Douglas C.; Meier, Dietrich; Oasmaa, Anja; van de Beld, Bert; Bridgwater, Anthony V.; Marklund, Magnus

    2017-04-06

    An international round robin study of the production of fast pyrolysis bio-oil was undertaken. Fifteen institutions in six countries contributed. Three biomass samples were distributed to the laboratories for processing in fast pyrolysis reactors. Samples of the bio-oil produced were transported to a central analytical laboratory for analysis. The round robin was focused on validating the pyrolysis community understanding of production of fast pyrolysis bio-oil by providing a common feedstock for bio-oil preparation. The round robin included: •distribution of 3 feedstock samples from a common source to each participating laboratory; •preparation of fast pyrolysis bio-oil in each laboratory with the 3 feedstocks provided; •return of the 3 bio-oil products (minimum 500 ml) with operational description to a central analytical laboratory for bio-oil property determination. The analyses of interest were: density, viscosity, dissolved water, filterable solids, CHN, S, trace element analysis, ash, total acid number, pyrolytic lignin, and accelerated aging of bio-oil. In addition, an effort was made to compare the bio-oil components to the products of analytical pyrolysis through GC/MS analysis. The results showed that clear differences can occur in fast pyrolysis bio-oil properties by applying different reactor technologies or configurations. The comparison to analytical pyrolysis method suggested that Py-GC/MS could serve as a rapid screening method for bio-oil composition when produced in fluid-bed reactors. Furthermore, hot vapor filtration generally resulted in the most favorable bio-oil product, with respect to water, solids, viscosity, and total acid number. These results can be helpful in understanding the variation in bio-oil production methods and their effects on bio-oil product composition.

  10. ROBIN, a Telepresence Robot to Support Older Users Monitoring and Social Inclusion: Development and Evaluation.

    Science.gov (United States)

    Cortellessa, Gabriella; Fracasso, Francesca; Sorrentino, Alessandra; Orlandini, Andrea; Bernardi, Giulio; Coraci, Luca; De Benedictis, Riccardo; Cesta, Amedeo

    2018-02-01

    This article describes an enhanced telepresence robot named ROBIN, part of a telecare system derived from the GIRAFFPLUS project for supporting and monitoring older adults at home. ROBIN is integrated in a sensor-rich environment that aims to continuously monitor physical and psychological wellbeing of older persons living alone. The caregivers (formal/informal) can communicate through it with their assisted persons. Long-term trials in real houses highlighted several user requirements that inspired improvements on the robotic platform. The enhanced telepresence robot was assessed by users to test its suitability to support social interaction and provide motivational feedback on health-related aspects. Twenty-five users (n = 25) assessed the new multimodal interaction capabilities and new communication services. A psychophysiological approach was adopted to investigate aspects like engagement, usability, and affective impact, as well as the possible role of individual differences on the quality of human-robot interaction. ROBIN was overall judged usable, the interaction with/through it resulted pleasant and the required workload was limited, thus supporting the idea of using it as a central component for remote assistance and social participation. Open-minded users tended to have a more positive interaction with it. This work describes an enabling technology for remote assistance and social communication. It highlights the importance of being compliant with users' needs to develop solutions easy to use and able to foster their social connections. The role of personality appeared to be relevant for the interaction, underscoring a clear role of the service personalization.

  11. An Integrated Constraint Programming Approach to Scheduling Sports Leagues with Divisional and Round-robin Tournaments

    Energy Technology Data Exchange (ETDEWEB)

    Carlsson, Mats; Johansson, Mikael; Larson, Jeffrey

    2014-01-01

    Previous approaches for scheduling a league with round-robin and divisional tournaments involved decomposing the problem into easier subproblems. This approach, used to schedule the top Swedish handball league Elitserien, reduces the problem complexity but can result in suboptimal schedules. This paper presents an integrated constraint programming model that allows to perform the scheduling in a single step. Particular attention is given to identifying implied and symmetry-breaking constraints that reduce the computational complexity significantly. The experimental evaluation of the integrated approach takes considerably less computational effort than the previous approach.

  12. Characterisation of neutron irradiation damage in zirconium alloys - a 'Round Robin' experiment

    International Nuclear Information System (INIS)

    Kelly, P.M.; Blake, R.G.; Jostsons, A.

    1977-01-01

    The nature of the damage structure in the neutron-irradiated zirconium specimens supplied as part of an international 'Round Robin' experiment has been studied using transmission electron microscopy. The damage structure consists entirely of a/3 dislocation loops and no evidence has been found for c component loops. Both vacancy and interstitial loops were found in specimens where inside/outside contrast analysis was possible. Quantitative measurements of loop size distributions and loop concentrations are reported. All specimens exhibited corduroy contrast to varying degress. (author)

  13. ROUND-ROBIN ATOM-PROBE EXPERIMENT : PRELIMINARY RESULTS IN JAPAN

    OpenAIRE

    Nakamura , S.

    1986-01-01

    A round-robin experiment were to be carried out by 6 laboratories in Japan (Nishikawa ; Tokyo Inst. Tech., Sakurai and Igata ; Univ. of Tokyo, Ishikawa ; Hitachi, Tanino ; Nippon Steel Corp. and Nakamura ; Osaka Univ.) under the normal operating condition (T < l00 °K,. pulse fraction ~ 15% ~, P < 10-9 torr). Fe-Cr-Al and W-25%Re alloys, which are divided from a single wire were chosen as the specimen materials. A preliminary analysis of the W-Re alloy of the laboratory concerned show the good...

  14. Data development for ASTM E24.06.02 round robin program on instability prediction

    Science.gov (United States)

    Mccabe, D. E.

    1979-01-01

    Basis data for use in an ASTM E24.06.02 task group round robin activity was developed. Compact specimens were made of 2024-T351, 7075-T651 aluminum alloys, and 304 stainless steel. All were 12.7 mm thick and planar dimension variables incorporated were for 1T, 2T and 4T sizes. Representative raw data for each material and specimen size are contained herein. R-curves plotted in terms of delta a physical and delta a effective are plotted for each material.

  15. Preliminary outcomes of the IUCR CPD round robin on quantitative phase analysis

    International Nuclear Information System (INIS)

    Madsen, I.

    1999-01-01

    Full text: The International Union for Crystallography - Commission on Powder Diffraction is currently sponsoring a round robin on quantitative phase analysis (QPA). The round robin is focusing on the analysis of powder diffraction data, namely laboratory X-ray, synchrotron X-ray and neutron diffraction data for the derivation of phase abundances. The general goals of the round robin include the following: 1. To document the methods and strategies commonly employed in quantitative phase analysis, especially those involving powder diffraction. 2. To assess (i) levels of accuracy and precision, and (ii) lower limits of detection of methods used in QPA. 3. To identify specific problem areas and develop practical solutions. 4. To formulate recommended procedures for QPA using diffraction data. 5. To create a standard set of samples for future reference. The samples used in the study consist of mixtures of major and minor components covering a wide range of analytical complexity. Initial samples are synthetic mixtures of crystallographically 'simple' materials and should present little problem to the analyst. Additional samples introduce problems such as preferred orientation, microabsorption and amorphous content to assess the degree to which these problems affect QPA. Several very complex materials have also been included in the sample suite including a natural granodiorite, synthetic bauxite and a mixture of pharmaceutical phases. These last three samples represent a significant analytical challenge as they exhibit preferred orientation, microabsorption and grain size effects in addition to severe peak overlap. The round robin was tailored to allow variation in the level of participation including (i) analysis of 'standard' data sets supplied by the CPD, (ii) collection and analysis of data from at least two of the samples supplied by the CPD and (iii) selection of additional samples at the discretion of the participant. At the time of writing this abstract, some 130

  16. Obstructive Hydrocephalus Secondary to Enlarged Virchow-Robin Spaces: A Rare Cause of Pulsatile Tinnitus.

    Science.gov (United States)

    Donaldson, Christopher; Chatha, Gurkirat; Chandra, Ronil V; Goldschlager, Tony

    2017-05-01

    Obstructive hydrocephalus secondary to enlarged Virchow-Robin Spaces (VRS) is a rare entity, with only a few cases reported in the literature. Presenting symptoms vary widely from headaches to dizziness. We report a case of a 31-year-old man who presented with pulsatile tinnitus and magnetic resonance imaging showing obstructive hydrocephalus secondary to tumefactive VRS. After a cerebrospinal fluid diversion procedure in the form of an endoscopic third ventriculostomy, he had almost complete resolution of his symptoms. This is the first case of obstructive hydrocephalus secondary to enlarged VRS, presenting with pulsatile tinnitus. Copyright © 2017 Elsevier Inc. All rights reserved.

  17. Statistically based reevaluation of PISC-II round robin test data

    International Nuclear Information System (INIS)

    Heasler, P.G.; Taylor, T.T.; Doctor, S.R.

    1993-05-01

    This report presents a re-analysis of an international PISC-II (Programme for Inspection of Steel Components, Phase 2) round-robin inspection results using formal statistical techniques to account for experimental error. The analysis examines US team performance vs. other participants performance,flaw sizing performance and errors associated with flaw sizing, factors influencing flaw detection probability, performance of all participants with respect to recently adopted ASME Section 11 flaw detection performance demonstration requirements, and develops conclusions concerning ultrasonic inspection capability. Inspection data were gathered on four heavy section steel components which included two plates and two nozzle configurations

  18. Pretest round robin analysis of 1:4-scale prestressed concrete containment vessel model

    International Nuclear Information System (INIS)

    Hessheimer, M.F.; Luk, V.K.; Klamerus, E.W.; Shibata, S.; Mitsugi, S.; Costello, J.F.

    2001-01-01

    The work reported herein represents, arguably, the state of the art in the numerical simulation of the response of a prestressed concrete containment vessel (PCCV) model to pressure loads up to failure. A significant expenditure of time and money on the part of the sponsors, contractors, and Round Robin participants was required to meet the objectives. While it is difficult to summarize the results of this extraordinary effort in a few paragraphs, the following observations are offered for the reader's consideration: almost half the participants used ABAQUS as the primary computational tool for performing the pretest analyses. The other participants used a variety of codes, most of which were developed ''in house''. (author)

  19. Results of eddy current test for second round robin by Halden reactor project

    International Nuclear Information System (INIS)

    Iwai, Takashi; Souzawa, Shizuo; Miyata, Seiichi; Sakai, Haruyuki; Sakakura, Atsushi

    1986-08-01

    JMTR Hot Laboratory has executed the eddy current test of two PWR type zircaloy cladding tubes for the second round robin by Halden Reactor Project. Defects manufactured on the test specimen were revealed on a fair way to success as a function of local position, phase character and size. Influence of the fatigue crack between the two different tubes was studied through the phase angle analysis. More effort should be needed for detecting rather smaller internal defect when it was combined with external and other various type of defects. (author)

  20. Approximate controllability of a semilinear elliptic problem with Robin condition in a periodically perforated domain

    Directory of Open Access Journals (Sweden)

    Nikita Agarwal

    2017-07-01

    Full Text Available In this article, we study the approximate controllability and homegenization results of a semi-linear elliptic problem with Robin boundary condition in a periodically perforated domain. We prove the existence of minimal norm control using Lions constructive approach, which is based on Fenchel-Rockafeller duality theory, and by means of Zuazua's fixed point arguments. Then, as the homogenization parameter goes to zero, we link the limit of the optimal controls (the limit of fixed point of the controllability problems with the optimal control of the corresponding homogenized problem.

  1. Numerical simulation of turbulent flows past the RoBin helicopter with a four-bladed rotor

    Energy Technology Data Exchange (ETDEWEB)

    Xu, H.; Mamou, M.; Khalid, M. [National Research Council, Inst. for Aerospace Research, Ottawa, Ontario (Canada)]. E-mail: Hongyi.Xu@nrc.ca

    2003-07-01

    The current paper presents a turbulent flow simulation study past a generic helicopter RoBin with a four-bladed rotor using the Chimera moving grid approach. The aerodynamic performance of the rotor blades and their interactions with the RoBin fuselage are investigated using the k - {omega} SST turbulence model contained in the WIND code. The rotor is configured as a Chimera moving grid in a quasisteady flow field. The rotor blades are rectangular, untapered, linearly twisted and are made from NACA 0012 airfoil profile. The blade motion (rotation and cyclic pitching) schedule is specified in the NASA wind tunnel testing of a generic helicopter RoBin. The aerodynamic radial load distributions in the rotor plane are generated by integrating the pressure on each blade surfaces along the blade chordwise direction. The rotor flow interacts strongly with the flow coming off from the fuselage and thus has a significant impact on helicopter aerodynamic performance. (author)

  2. A tabu-search for minimising the carry-over effects value of a round-robin tournament

    Directory of Open Access Journals (Sweden)

    MP Kidd

    2010-12-01

    Full Text Available A player b in a round-robin sports tournament receives a carry-over effect from another player a if some third player opposes a in round i and b in round i+1. Let γ(ab denote the number of times player b receives a carry-over effect from player a during a tournament. Then the carry-over effects value of the entire tournament T on n players is given by Γ(T=ΣΣγ(ij^2. Furthermore, let Γ(n denote the minimum carry-over effects value over all round-robin tournaments on n players. A strict lower bound on Γ(n is n(n-1 (in which case there exists a round-robin tournament of order n such that each player receives a carry-over effect from each other player exactly once, and it is known that this bound is attained for n=2^r or n=20,22. It is also known that round-robin tournaments can be constructed from so-called starters; round-robin tournaments constructed in this way are called cyclic. It has previously been shown that cyclic round-robin tournaments have the potential of admitting small values for Γ(T, and in this paper a tabu-search is used to find starters which produce cyclic tournaments with small carry-over effects values. The best solutions in the literature are matched for n<=22, and new upper bounds are established on Γ(n for 24<=n<=40.

  3. Notch toughness variability in A542 steel used in the European Group on Fracture Jsub(1c) round robin programme

    International Nuclear Information System (INIS)

    Druce, S.G.

    1983-04-01

    The through thickness variability of toughness in a 2 1/4 Cr 1Mo steel plate used in the EGF Jsub(1c) round robin has been evaluated using the Charpy impact testing. The results indicate that the toughness properties at the mid thickness position are inferior to those +- 50 mm from this position and that a comparatively large degree of scatter is present at all depth locations. The relevance of these findings to the Jsub(1c) round robin assessment is briefly discussed. (author)

  4. Out-of-Sequence Preventative Cell Dispatching for Multicast Input-Queued Space-Memory-Memory Clos-Network

    DEFF Research Database (Denmark)

    Yu, Hao; Ruepp, Sarah Renée; Berger, Michael Stübert

    2011-01-01

    This paper proposes two out-of-sequence (OOS) preventative cell dispatching algorithms for the multicast input-queued space-memory-memory (IQ-SMM) Clos-network switch architecture, i.e. the multicast flow-based DSRR (MF-DSRR) and the multicast flow-based round-robin (MFRR). Treating each cell...

  5. Preventing Out-of-Sequence for Multicast Input-Queued Space-Memory-Memory Clos-Network

    DEFF Research Database (Denmark)

    Yu, Hao; Ruepp, Sarah Renée; Berger, Michael Stübert

    2011-01-01

    This paper proposes an out-of-sequence (OOS) preventative cell dispatching algorithm, the multicast flow-based round robin (MFRR), for multicast input-queued space-memory-memory (IQ-SMM) Clos-network architecture. Independently treating each incoming cell, such as the desynchronized static round...

  6. Characterization of the Escherichia coli prsA1-encoded mutant phosphoribosylpyrophosphate synthetase identifies a divalent cation-nucleotide binding site

    DEFF Research Database (Denmark)

    Bower, Stanley G.; Harlow, Kenneth W.; Switzer, Robert L.

    1989-01-01

    : DLHAXQIQGFFDI/VPI/VD. There was little alteration in the Km for ribose 5-phosphate. The Km for ATP of the mutant enzyme was increased 27-fold when Mg2+ was the activating cation but only 5-fold when Mn2+ was used. Maximal velocities of the wild type and mutant enzymes were the same. The mutant enzyme has a 6......-fold lower affinity for Ca2+, as judged by the ability of Ca2+ to inhibit the reaction in the presence of 10 mM Mg2+. Wild type PRPP synthetase is subject to product inhibition by AMP, but AMP inhibition of the prsA1 mutant enzyme could not be detected. It has been previously proposed that a divalent...

  7. Round robin: Quantitative lateral resolution of PHI XPS microprobes Quantum 2000/Quantera SXM

    International Nuclear Information System (INIS)

    Scheithauer, Uwe; Kolb, Max; Kip, Gerard A.M.; Naburgh, Emile; Snijders, J.H.M.

    2016-01-01

    Highlights: • The quantitative lateral resolution of 7 PHI XPS microprobes has been estimated in a round robin. • An ellipsoidally shaped quartz crystal monochromatizes the Alkα radiation and refocuses it from the Al anode to the sample surface. • The long tail contributions of the X-ray beam intensity distribution were measured using a new and innovative approach. • This quantitative lateral resolution has a significantly larger value than the nominal X-ray beam diameter. • The quantitative lateral resolution follows a trend in time: The newer the monochromator so much the better the quantitative lateral resolution. - Abstract: The quantitative lateral resolution is a reliable measure for the quality of an XPS microprobe equipped with a focused X-ray beam. It describes the long tail contributions of the X-ray beam intensity distribution. The knowledge of these long tail contributions is essential when judging on the origin of signals of XPS spectra recorded on small-sized features. In this round robin test the quantitative lateral resolution of 7 PHI XPS microprobes has been estimated. As expected, the quantitative lateral resolution has significantly larger values than the nominal X-ray beam diameter. The estimated values of the quantitative lateral resolution follow a trend in time: the newer the monochromator of an XPS microprobe so much the better the quantitative lateral resolution.

  8. Round robin: Quantitative lateral resolution of PHI XPS microprobes Quantum 2000/Quantera SXM

    Energy Technology Data Exchange (ETDEWEB)

    Scheithauer, Uwe, E-mail: scht.uhg@googlemail.com [82008 Unterhaching (Germany); Kolb, Max, E-mail: max.kolb@airbus.com [Airbus Group Innovations, TX2, 81663 Munich (Germany); Kip, Gerard A.M., E-mail: G.A.M.Kip@utwente.nl [Universiteit Twente, MESA+ Nanolab, Postbus 217, 7500AE Enschede (Netherlands); Naburgh, Emile, E-mail: e.p.naburgh@philips.com [Materials Analysis, Philips Innovation Services, High Tech Campus 11, 5656 AE Eindhoven (Netherlands); Snijders, J.H.M., E-mail: j.h.m.snijders@philips.com [Materials Analysis, Philips Innovation Services, High Tech Campus 11, 5656 AE Eindhoven (Netherlands)

    2016-07-15

    Highlights: • The quantitative lateral resolution of 7 PHI XPS microprobes has been estimated in a round robin. • An ellipsoidally shaped quartz crystal monochromatizes the Alkα radiation and refocuses it from the Al anode to the sample surface. • The long tail contributions of the X-ray beam intensity distribution were measured using a new and innovative approach. • This quantitative lateral resolution has a significantly larger value than the nominal X-ray beam diameter. • The quantitative lateral resolution follows a trend in time: The newer the monochromator so much the better the quantitative lateral resolution. - Abstract: The quantitative lateral resolution is a reliable measure for the quality of an XPS microprobe equipped with a focused X-ray beam. It describes the long tail contributions of the X-ray beam intensity distribution. The knowledge of these long tail contributions is essential when judging on the origin of signals of XPS spectra recorded on small-sized features. In this round robin test the quantitative lateral resolution of 7 PHI XPS microprobes has been estimated. As expected, the quantitative lateral resolution has significantly larger values than the nominal X-ray beam diameter. The estimated values of the quantitative lateral resolution follow a trend in time: the newer the monochromator of an XPS microprobe so much the better the quantitative lateral resolution.

  9. Round Robin Analyses on Stress Intensity Factors of Inner Surface Cracks in Welded Stainless Steel Pipes

    Directory of Open Access Journals (Sweden)

    Chang-Gi Han

    2016-12-01

    Full Text Available Austenitic stainless steels (ASSs are widely used for nuclear pipes as they exhibit a good combination of mechanical properties and corrosion resistance. However, high tensile residual stresses may occur in ASS welds because postweld heat treatment is not generally conducted in order to avoid sensitization, which causes a stress corrosion crack. In this study, round robin analyses on stress intensity factors (SIFs were carried out to examine the appropriateness of structural integrity assessment methods for ASS pipe welds with two types of circumferential cracks. Typical stress profiles were generated from finite element analyses by considering residual stresses and normal operating conditions. Then, SIFs of cracked ASS pipes were determined by analytical equations represented in fitness-for-service assessment codes as well as reference finite element analyses. The discrepancies of estimated SIFs among round robin participants were confirmed due to different assessment procedures and relevant considerations, as well as the mistakes of participants. The effects of uncertainty factors on SIFs were deducted from sensitivity analyses and, based on the similarity and conservatism compared with detailed finite element analysis results, the R6 code, taking into account the applied internal pressure and combination of stress components, was recommended as the optimum procedure for SIF estimation.

  10. Round Robin Test for Performance Demonstration System of Ultrasound Examination Personnel in Nuclear Power Plants

    International Nuclear Information System (INIS)

    Kim, Young Ho; Yang, Seung Han; Kim, Yong Sik; Yoon, Byung Sik; Lee, Hee Jong

    2005-01-01

    Ultrasound testing performance during in-service inspection for the main components of NPPs is strongly affected by each examination person. Therefore, ASME established a more strict qualification requirement in Sec. XI Appendix VIII for the ultrasound testing personnel in nuclear power plants. The Korean Performance Demonstration (KPD) System according to the ASME code for the ultrasonic testing personnel, equipments, and procedures to apply to the Class 1 and 2 piping ultrasound examination of nuclear power plants in Korea was established. And a round robin test was conducted in order to verify the effectiveness of PD method by comparing the examination results from the method of Performance Demonstration (PD) and a traditional ASME code dB-drop method. The round robin test shows that the reliability of the PD method is better than that of the dB-drop method. As a result, application of the PD method to the in-service inspection of the nuclear power plants will improve the performance of ultrasound testing

  11. Robins Air Force Base integrated resource assessment. Volume 3, Resource assessment

    Energy Technology Data Exchange (ETDEWEB)

    Sullivan, G.P.; Keller, J.M.; Stucky, D.J.; Wahlstrom, R.R.; Larson, L.L.

    1993-10-01

    The US Air Force Materiel Command (AFMC) has tasked the US Department of Energy (DOE) Federal Energy Management Program (FEMP), supported by the Pacific Northwest Laboratory (PNL), to identify, evaluate, and assist in acquiring all cost-effective energy projects at Robins Air Force Base (AFB). This is part of a model program that PNL is designing to support energy-use decisions in the federal sector. This report provides the results of the fossil fuel and electric energy resource opportunity (ERO) assessments performed by PNL at the AFMC Robins AFB facility located approximately 15 miles south of Macon, Georgia. It is a companion report to Volume 1, Executive Summary, and Volume 2, Baseline Detail. The results of the analyses of EROs are presented in 13 common energy end-use categories (e.g., boilers and furnaces, service hot water, and building lighting). A narrative-description of each ERO is provided, including information on the installed cost, energy and dollar savings; impacts on operation and maintenance (O&M); and, when applicable, a discussion of energy supply and demand, energy security, and environmental issues. A description of the evaluation methodologies and technical and cost assumptions is also provided for each ERO. Summary tables present the cost-effectiveness of energy end-use equipment before and after the implementation of each ERO and present the results of the life-cycle cost (LCC) analysis indicating the net present value (NPV) and savings to investment ratio (SIR) of each ERO.

  12. Evaluation of interlaboratory round robin study (2000-2003) in Japan

    Energy Technology Data Exchange (ETDEWEB)

    Shiozaki, T. [Japan Environmental Sanitation Center, Kawasaki, Kanagawa (Japan); Takasuga, T. [Shimadzu Techno Research (Japan); Iwaki, K. [Ebara Research (Japan); Mochizuki, T. [Kokan Keisoku (Japan); Miyazaki, T. [Nittech Research (Japan); Tanaka, K. [Toray Research Center (Japan)

    2004-09-15

    Inter-laboratory round robin is available for maintaining dioxin analytical quality/skills by testing or certified laboratories. There are over 150 dioxin testing laboratories available in Japan consequently, Ministry of Environment (MOE) and Ministry of Economy Trade and Industry (METI) have began to investigate quality of dioxin testing laboratory and to upgrade their skills with in 4 years. On the other hands, Research Group for Dioxin Analysis which have technical experts from 33 private dioxin testing laboratories had carried out inter-laboratory round robin 4 times since 1998. These studies has been transferred to new research group namely, Research Group on Ultra trace Analyses (UTA) which is accompanied organization of Japan Environmental Measurement and Chemical Analysis Association (JEMCA) in 2003. The UTA consists 83 private dioxin testing laboratories and has been subjected to grow up the technical potential for not only dioxins but other trace level analysis of well known persistent organic pollutants (POPs), endocrine disrupting chemicals (EDCs) and ubiquitous contaminants in the environment. Former research group had run final round (4{sup th}) and new UTA carried out first round studies in 2001 And 2003, respectively. Percentage relative standard deviations (RSD) for each polychlorinated dibenzo-pdioxins (PCDDs), polychlorinated dibenzofurans (PCDFs) and dioxin-like polychlorinated biphenyls (DL-PCBs) have become smaller than past studies.

  13. An XPS round robin investigation on analysis of wood pulp fibres and filter paper

    Science.gov (United States)

    Johansson, Leena-Sisko; Campbell, J. M.; Fardim, Pedro; Hultén, Anette Heijnesson; Boisvert, Jean-Philippe; Ernstsson, Marie

    2005-06-01

    X-ray photoelectron spectroscopy (XPS) has been applied to pulp and paper research for decades. However, there has been no attempt to standardise or even systematically compare experimental and analysis procedures, even though it is known that fibrous, nature-derived and insulating fibre materials pose remarkable challenges to reliable surface analysis. The experimental problems are mainly linked with neutralisation, energy resolution, contamination and X-ray induced degradation. We have tested applicability, reliability and reproducibility of XPS analysis on real pulp samples with varying lignin and extractives contents in a small round robin investigation. We also tested the instrumental set-ups with an acetone-extracted filter paper, used as a reference sample. The data, collected at four different laboratories with state-of-the-art instruments indicate that reproducible results can be obtained, despite minor differences in experimental and analysis procedures. However, we found that a specified sample handling procedure and limited X-ray exposure are crucial for reproducible, reliable data. Based on the round robin data we recommend dose restricted monochromatic measurements, a cellulosic in situ reference and a consistent sample handling procedure. The data confirms that a paper-based reference material and the correlation of high-resolution C 1s data with O/C atomic ratios can be used in testing instruments and experimental set-ups for pulp and paper materials.

  14. Round Robin/collaborative programme [cyclic crack growth in low alloy steel

    International Nuclear Information System (INIS)

    Jones, R.L.; Hurst, P.; Scott, P.M.

    1989-01-01

    During the 10 years of its existence International Cooperative Group on Cyclic Crack Growth the (ICCGR) has undertaken five collaborative efforts related to cyclic crack growth and stress corrosion susceptibility in reactor pressure vessel steels. The initial collaborative effort, a data reduction exercise, identified and reconciled several important procedural differences and led to confidence that, given the same crack length versus cycles data, the Group members could all derive similar plots of da/dN versus δK. Subsequently, a low-R testing round robin highlighted the importance of a number of comparatively subtle aspects of the methods used for cyclic crack growth testing in water environments and led to confidence that the various laboratories could generate similar test data, given the same test material and a sufficiently precise and detailed test specification. The results of a high-R test programme support the conclusion that the state of the art of cyclic crack growth testing has now advanced to a point at which coordinated, multilaboratory test programmes are feasible and indeed, such a programme covering the influence of temperature is currently under way. The slow strain rate round robin has highlighted important test variables, notably the electrochemical potential, which must be carefully controlled in assessing the conditions under which pressure vessel steels may suffer from stress corrosion cracking. (author)

  15. Learning Multirobot Hose Transportation and Deployment by Distributed Round-Robin Q-Learning.

    Directory of Open Access Journals (Sweden)

    Borja Fernandez-Gauna

    Full Text Available Multi-Agent Reinforcement Learning (MARL algorithms face two main difficulties: the curse of dimensionality, and environment non-stationarity due to the independent learning processes carried out by the agents concurrently. In this paper we formalize and prove the convergence of a Distributed Round Robin Q-learning (D-RR-QL algorithm for cooperative systems. The computational complexity of this algorithm increases linearly with the number of agents. Moreover, it eliminates environment non sta tionarity by carrying a round-robin scheduling of the action selection and execution. That this learning scheme allows the implementation of Modular State-Action Vetoes (MSAV in cooperative multi-agent systems, which speeds up learning convergence in over-constrained systems by vetoing state-action pairs which lead to undesired termination states (UTS in the relevant state-action subspace. Each agent's local state-action value function learning is an independent process, including the MSAV policies. Coordination of locally optimal policies to obtain the global optimal joint policy is achieved by a greedy selection procedure using message passing. We show that D-RR-QL improves over state-of-the-art approaches, such as Distributed Q-Learning, Team Q-Learning and Coordinated Reinforcement Learning in a paradigmatic Linked Multi-Component Robotic System (L-MCRS control problem: the hose transportation task. L-MCRS are over-constrained systems with many UTS induced by the interaction of the passive linking element and the active mobile robots.

  16. Viewpoint held by the -Robin des bois- environment protection association regarding radioactive waste

    International Nuclear Information System (INIS)

    Bonnemains, J.

    2011-01-01

    For twenty years, the 'Robin des Bois' association has held the belief that every country must manage the hazardous waste, including radioactive waste, that it produces. The vehemence of German anti-nuclear activists in rejecting the return of waste produced by recycling irradiated fuel from German nuclear power plants runs counter to the principles of responsibility and proximity to which ecologists claim to adhere. There are more reasonable means available than refusing to manage end-of-cycle nuclear waste, such as blockading power plants or the uranium enrichment plant in Gronau which supplies the nuclear power industry worldwide. In Lower Saxony, the La Hague plant located on this West European headland is therefore thought of as the ideal hideaway for this waste. It is true that the list of radioactive scrap, hospital waste, asbestos from the steamer, the Norway, and WEEE exported by Germany is long. Robin des Bois is against recycling irradiated fuel as it facilitates the proliferation and dispersion of plutonium and other radionuclides into the environment. The association has revealed many scandals and lies related to recycling in areas other than the nuclear industry, which have been concealed behind the false good ecological and systematically positive image of recycling. (author)

  17. Round robin analysis on stress intensity factor of inner surface cracks in welded stainless steel pipes

    Energy Technology Data Exchange (ETDEWEB)

    Han, Chang Gi; Chang, Yoon Suk [Dept. of Nuclear Engineering, College of Engineering, Kyung Hee University, Yongin (Korea, Republic of); Kim, Jong Sung [Dept. of Mechanical Engineering, Sunchon National University, Sunchon (Korea, Republic of); Kim, Maan Won [Central Research Institute, Korea Hydro and Nuclear Power Company, Daejeon (Korea, Republic of)

    2016-12-15

    Austenitic stainless steels (ASSs) are widely used for nuclear pipes as they exhibit a good combination of mechanical properties and corrosion resistance. However, high tensile residual stresses may occur in ASS welds because postweld heat treatment is not generally conducted in order to avoid sensitization, which causes a stress corrosion crack. In this study, round robin analyses on stress intensity factors (SIFs) were carried out to examine the appropriateness of structural integrity assessment methods for ASS pipe welds with two types of circumferential cracks. Typical stress profiles were generated from finite element analyses by considering residual stresses and normal operating conditions. Then, SIFs of cracked ASS pipes were determined by analytical equations represented in fitness-for-service assessment codes as well as reference finite element analyses. The discrepancies of estimated SIFs among round robin participants were confirmed due to different assessment procedures and relevant considerations, as well as the mistakes of participants. The effects of uncertainty factors on SIFs were deducted from sensitivity analyses and, based on the similarity and conservatism compared with detailed finite element analysis results, the R6 code, taking into account the applied internal pressure and combination of stress components, was recommended as the optimum procedure for SIF estimation.

  18. Commentary: Wild psychometrics: Evidence for ‘general’ cognitive performance in wild New Zealand robins, Petroica longipes

    OpenAIRE

    Hackett, Paul M. W.

    2017-01-01

    A commentary on\\ud Wild psychometrics: Evidence for ‘general’ cognitive performance in wild New Zealand robins, Petroica longipes\\ud \\ud by Shaw, R. C., Boogert, N. J., Clayton, N. S., and Burns, K. C. (2015). Anim. Behav. 109, 101–111. doi: 10.1016/j.anbehav.2015.08.001

  19. A round robin study of flexible large-area roll-to-roll processed polymer solar cell modules

    DEFF Research Database (Denmark)

    Krebs, Frederik C; Gevorgyan, Suren; Gholamkhass, Bobak

    2009-01-01

    A round robin for the performance of roll-to-roll coated flexible large-area polymer solar-cell modules involving 18 different laboratories in Northern America, Europe and Middle East is presented. The study involved the performance measurement of the devices at one location (Risø DTU) followed b...

  20. A comparison of the nesting success of mourning doves and American robins in conventionally managed and organic orchards

    Science.gov (United States)

    Fluetsch, K.M.

    1992-01-01

    A comparative study was undertaken to document more closely the effects of operational pesticide use on non-target avian species. Mourning Dove (Zenaida macroura) and American Robin (Turdus migratorius) nesting activity was monitored in three organic and three conventional orchards during two breeding seasons. Surveys were conducted to characterize the avian community within orchards under both management practices. Organophosphorus (OP) and carbamate pesticides, known to be extremely toxic to birds, were repeatedly sprayed during the peaks in dove and robin breeding activity. Spray card tests revealed that OP pesticides were deposited on 85.5% of the nests tested during routine spray operations. The threat of direct pesticide exposure to eggs, nestlings, and adult birds was considerable. Nest daily survival rates (DSRs) for both doves and robins, were significantly higher in the organic orchards than in the conventional orchards in 1991 and years combined (P < 0.05). Species diversity was significantly greater in the organic orchards (H = 2.43) than in the conventional orchards (H = 1.79). Results suggest that repeated applications of pesticides, within the conventional orchards, directly or indirectly, affected the reproductive success of doves and robins, as well as influenced species diversity within the treated orchards. Organic orchards appear to provide more favorable nesting and foraging habitat for birds than conventional orchards.

  1. Riding on the Back of a Giant: Adding Malta to the "5 Cultures" Study by Robin Alexander

    Science.gov (United States)

    Peresso, Randolph

    2017-01-01

    This paper focuses on the methodology adopted for Malta+5, which builds on Robin Alexander's work by comparing the five pedagogical cultures he studied to the one in Malta. It reflects critically on the research process adopted in this study, and shows how, despite the very limited experience and resources, applying the methodology, frameworks and…

  2. Calibration of straight TXRF analysis - results of an European Round Robin test

    International Nuclear Information System (INIS)

    Rink, I.; Wortelboer, R.; Gendt, S. de; Horn, M.; Steiner, J.; Neumann, C.; Knoth, J.; Schwenke, H.; Dobler, M.; Erdmann, V.; Rostam-Khani, P.; Kolbesen, B.O.; Metz, S.; Pahlke, S.; Fabry, L.; Gonchond, J.P.; Weiss, C.; Comin, F.

    2000-01-01

    Calibration of spot measurements pose in general less problems than calibration of straight TXRF measurements as several Round Robin tests show. This is at least matter of discussion for those TXRF users who apply a droplet standard for straight TXRF measurements at the angle of incident where particle and film-type contamination show the same fluorescence intensity - the so-called iso-angle. In order to gain more insight in the differences between several TXRF-equipment types and calibration methods we started an European Round Robin test in 1998 in which twelve firms participated using twenty different TXRF-tools, one RBS- and one Synchrotron-TXRF equipment. In contrast to earlier global Round Robin tests e.g. in 1996 (ISO/TC201/WG2) direct comparison of measurements of the same wafers is possible, because the same wafers were sent to several participants and additional reference measurements were performed at Philips as well. Wafer preparation has been performed by spin-coating of Ni (5 concentrations) and by dipping in Fe-spiked SCI-solution (1 blank, 2 spiking concentrations). From this eight sets were formed containing eight wafers with varying Ni-and Fe-concentrations. All wafers were firstly measured at Philips as reference and then sent to certain participant-groups. The results of this first measurement show that the sets were almost comparable to each other with a standard deviation of < 15 % for the variants Ni-3, Ni-4, Ni-5 and Fe-2, with exception of few single concentrations of some sets. After normalization it is possible to compare all results of these variants with one reference value. The results can be divided in three groups with similar results and one extreme outlier: group 1: RBS-results and those results based on correction with Fit-program from GKSS, calibration with spin-coated wafers (RBS, Radio tracer) and results of one XSA 8000 and of one Rigaku 3750; group 2: Results of all Atomika TXRF 8030, three Atomika TXRF 8010, one TREX630S

  3. PENGUKURAN KINERJA ROUND-ROBIN SCHEDULER UNTUK LINUX VIRTUAL SERVER PADA KASUS WEB SERVER

    Directory of Open Access Journals (Sweden)

    Royyana Muslim Ijtihadie

    2005-07-01

    Full Text Available Normal 0 false false false IN X-NONE X-NONE MicrosoftInternetExplorer4 /* Style Definitions */ table.MsoNormalTable {mso-style-name:"Table Normal"; mso-tstyle-rowband-size:0; mso-tstyle-colband-size:0; mso-style-noshow:yes; mso-style-priority:99; mso-style-qformat:yes; mso-style-parent:""; mso-padding-alt:0cm 5.4pt 0cm 5.4pt; mso-para-margin:0cm; mso-para-margin-bottom:.0001pt; mso-pagination:widow-orphan; font-size:11.0pt; font-family:"Calibri","sans-serif"; mso-ascii-font-family:Calibri; mso-ascii-theme-font:minor-latin; mso-fareast-font-family:"Times New Roman"; mso-fareast-theme-font:minor-fareast; mso-hansi-font-family:Calibri; mso-hansi-theme-font:minor-latin; mso-bidi-font-family:"Times New Roman"; mso-bidi-theme-font:minor-bidi;} Dengan meningkatnya perkembangan jumlah pengguna internet dan mulai diadopsinya penggunaan internet dalam kehidupan sehari-hari, maka lalulintas data di Internet telah meningkat secara signifikan. Sejalan dengan itu pula beban kerja server-server yang memberikan service di Internet juga mengalami kenaikan yang cukup signifikan. Hal tersebut dapat mengakibatkan suatu server mengalami kelebihan beban pada suatu saat. Untuk mengatasi hal tersebut maka diterapkan skema konfigurasi server cluster menggunakan konsep load balancing. Load balancing server menerapkan algoritma dalam melakukan pembagian tugas. Algoritma round robin telah digunakan pada Linux Virtual Server. Penelitian ini melakukan pengukuran kinerja terhadap Linux Virtual Server yang menggunakan algoritma round robin untuk melakukan penjadwalan pembagian beban terhadap server. Penelitian ini mengukur performa dari sisi client yang mencoba mengakses web server.performa yang diukur adalah jumlah request yang bisa diselesaikan perdetik (request per second, waktu untuk menyelesaikan per satu request, dan   throughput yang dihasilkan. Dari hasil percobaan didapatkan bahwa penggunaan LVS bisa meningkatkan performa, yaitu menaikkan jumlah request per detik

  4. "Robin Hood" of techno-Turkey or organ trafficking in the state of ethical beings.

    Science.gov (United States)

    Sanal, Aslihan

    2004-09-01

    Dr S. is a famous transplant surgeon in the Middle East. He operates "underground" on wealthy patients in different countries, from Israel to Turkey to Russia. The media refer to him as the "Organ Mafia doctor," and patients diagnosed with renal failure speak of him sardonically as "Robin Hood," acknowledging that he takes organs from the poor to give to the rich. But ethical issues of organ trafficking are not limited to marginal private clinics and "Mafia" doctors. All-living related organ transplants in Turkey involve similar ethical dilemmas: many related or nonrelated organ recipients pay their donors, and demand continues to rise. This paper explores practices in state and university hospitals and the ethical dilemmas doctors encounter to understand where and how judicial, cultural, and social categories of "human rights" and "crime" are constructed in our high-tech world.

  5. An object-based approach for detecting small brain lesions: application to Virchow-Robin spaces.

    Science.gov (United States)

    Descombes, Xavier; Kruggel, Frithjof; Wollny, Gert; Gertz, Hermann Josef

    2004-02-01

    This paper is concerned with the detection of multiple small brain lesions from magnetic resonance imaging (MRI) data. A model based on the marked point process framework is designed to detect Virchow-Robin spaces (VRSs). These tubular shaped spaces are due to retraction of the brain parenchyma from its supplying arteries. VRS are described by simple geometrical objects that are introduced as small tubular structures. Their radiometric properties are embedded in a data term. A prior model includes interactions describing the clustering property of VRS. A Reversible Jump Markov Chain Monte Carlo algorithm (RJMCMC) optimizes the proposed model, obtained by multiplying the prior and the data model. Example results are shown on T1-weighted MRI datasets of elderly subjects.

  6. Statistical reliability assessment of UT round-robin test data for piping welds

    International Nuclear Information System (INIS)

    Kim, H.M.; Park, I.K.; Park, U.S.; Park, Y.W.; Kang, S.C.; Lee, J.H.

    2004-01-01

    Ultrasonic NDE is one of important technologies in the life-time maintenance of nuclear power plant. Ultrasonic inspection system is consisted of the operator, equipment and procedure. The reliability of ultrasonic inspection system is affected by its ability. The performance demonstration round robin was conducted to quantify the capability of ultrasonic inspection for in-service. Several teams employed procedures that met or exceeded with ASME sec. XI code requirements detected the piping of nuclear power plant with various cracks to evaluate the capability of detection and sizing. In this paper, the statistical reliability assessment of ultrasonic nondestructive inspection data using probability of detection (POD) is presented. The result of POD using logistic model was useful to the reliability assessment for the NDE hit or miss data. (orig.)

  7. Fingerprinting analysis of oil samples for inter-laboratory Round Robin, 2007

    International Nuclear Information System (INIS)

    Yang, C.; Wang, Z.; Hollebone, B.; Brown, C.E.; Landriault, M.; Shang, D.; Losier, R.; Cook, A.

    2008-01-01

    The oil from an oil spill must undergo a complete chemical characterization in order to determine the source of the oil, to distinguish the spilled oil from background hydrocarbons and to evaluate the extent of impact. A study was conducted to determine the ability of international analytical laboratories to independently conduct forensic oil analysis and identification. A Round Robin study was conducted in which advanced chemical fingerprinting and data interpretation techniques were used to differentiate the types and sources of spilled oils. The participants of the Round Robin exercise were the Institute of Inland Water Management and Waste Water Treatment (RIZA) in the Netherlands and the Federal Maritime and Hydrographic Agency (BSH) in Germany. In May 2007, 6 oil samples were distributed to the participants. In the artificial oil spill scenario, 2 oil samples were considered as candidate sources and the other 4 samples were labeled as spilled oils. No other information about these oils was provided before submission of final results. Chemical fingerprinting was carried out using gas chromatography, flame ionization detection and mass spectrometry along with statistical data to determine the source of the spill. N-alkanes, alkylated polyaromatic hydrocarbons, biomarker terpanes and steranes and triaromatic steranes were normalized to C 30 17α(H)21β(H)-hopane and then semi-quantitated. Thirty diagnostic ratios of target compounds were calculated from their peak heights and areas at selected ions. Results of the 2 source samples were compared with 4 spill samples. Tiered fingerprinting analysis revealed that source oil 1 was a non-match with spill samples 3 and 4, but a probable match with spill samples 5 and 6. Source sample 2 did not match any of the 4 spilled oils. A lack of background information essential to oil spill identification made it impossible to draw an unambiguous conclusion. 14 refs., 4 tabs., 6 figs

  8. Fingerprinting analysis of oil samples for inter-laboratory Round Robin, 2007

    Energy Technology Data Exchange (ETDEWEB)

    Yang, C.; Wang, Z.; Hollebone, B.; Brown, C.E.; Landriault, M. [Environment Canada, Ottawa, ON (Canada). Emergencies Science and Technology Division, Science and Technology Branch, Environmental Science and Technology Centre; Shang, D. [Environment Canada, North Vancouver, BC (Canada). Pacific Environmental Science Centre; Losier, R.; Cook, A. [Environment Canada, Moncton, NB (Canada). Environmental Science Centre

    2008-07-01

    The oil from an oil spill must undergo a complete chemical characterization in order to determine the source of the oil, to distinguish the spilled oil from background hydrocarbons and to evaluate the extent of impact. A study was conducted to determine the ability of international analytical laboratories to independently conduct forensic oil analysis and identification. A Round Robin study was conducted in which advanced chemical fingerprinting and data interpretation techniques were used to differentiate the types and sources of spilled oils. The participants of the Round Robin exercise were the Institute of Inland Water Management and Waste Water Treatment (RIZA) in the Netherlands and the Federal Maritime and Hydrographic Agency (BSH) in Germany. In May 2007, 6 oil samples were distributed to the participants. In the artificial oil spill scenario, 2 oil samples were considered as candidate sources and the other 4 samples were labeled as spilled oils. No other information about these oils was provided before submission of final results. Chemical fingerprinting was carried out using gas chromatography, flame ionization detection and mass spectrometry along with statistical data to determine the source of the spill. N-alkanes, alkylated polyaromatic hydrocarbons, biomarker terpanes and steranes and triaromatic steranes were normalized to C{sub 30} 17{alpha}(H)21{beta}(H)-hopane and then semi-quantitated. Thirty diagnostic ratios of target compounds were calculated from their peak heights and areas at selected ions. Results of the 2 source samples were compared with 4 spill samples. Tiered fingerprinting analysis revealed that source oil 1 was a non-match with spill samples 3 and 4, but a probable match with spill samples 5 and 6. Source sample 2 did not match any of the 4 spilled oils. A lack of background information essential to oil spill identification made it impossible to draw an unambiguous conclusion. 14 refs., 4 tabs., 6 figs.

  9. Natal Dispersal in the North Island Robin (Petroica longipes: the Importance of Connectivity in Fragmented Habitats

    Directory of Open Access Journals (Sweden)

    Askia K. Wittern

    2007-12-01

    Full Text Available Natal dispersal is an important component in bird population dynamics and can influence the persistence of local and metapopulations. We examined natal dispersal in the North Island robin (Petroica longipes, a sedentary bird species distributed in a fragmented forest habitat on Tiritiri Matangi Island, New Zealand. Earlier studies have shown that the only dispersal phase in this species takes place when juveniles leave their natal patch, and that juveniles who fail to find suitable habitat do not survive their first winter. These findings suggest that natal dispersal behavior in this species is important for population viability. We found that juveniles were highly affected by the fragmentation of the forest habitat, with patch occupancy being positively correlated with degree of connectivity of the landscape. Most juvenile movements (52.1% were observed between patches that were separated by less than 20 m. Juvenile North Island robins were found in all forest habitat types, including young and open stands. This suggests that the juveniles are not dependent on old forest stands during their dispersal phase. Based on these findings, we suggest that management of this regionally-threatened species should focus not only on maintaining populations in occupied patches and increasing the habitat quality of these patches, but also on protecting existing forest patches acting as corridors and creating new forest habitat among patches. This would greatly increase the viability of the species' metapopulations by increasing dispersal success between both unoccupied patches and subpopulations. Additionally, increased connectivity between forest patches could also be expected to increase the probability of successful dispersal of other threatened native species, many of which are also sensitive to the high degree of fragmentation of their habitats.

  10. Computational fluid dynamics (CFD) round robin benchmark for a pressurized water reactor (PWR) rod bundle

    Energy Technology Data Exchange (ETDEWEB)

    Kang, Shin K., E-mail: paengki1@tamu.edu; Hassan, Yassin A.

    2016-05-15

    Highlights: • The capabilities of steady RANS models were directly assessed for full axial scale experiment. • The importance of mesh and conjugate heat transfer was reaffirmed. • The rod inner-surface temperature was directly compared. • The steady RANS calculations showed a limitation in the prediction of circumferential distribution of the rod surface temperature. - Abstract: This study examined the capabilities and limitations of steady Reynolds-Averaged Navier–Stokes (RANS) approach for pressurized water reactor (PWR) rod bundle problems, based on the round robin benchmark of computational fluid dynamics (CFD) codes against the NESTOR experiment for a 5 × 5 rod bundle with typical split-type mixing vane grids (MVGs). The round robin exercise against the high-fidelity, broad-range (covering multi-spans and entire lateral domain) NESTOR experimental data for both the flow field and the rod temperatures enabled us to obtain important insights into CFD prediction and validation for the split-type MVG PWR rod bundle problem. It was found that the steady RANS turbulence models with wall function could reasonably predict two key variables for a rod bundle problem – grid span pressure loss and the rod surface temperature – once mesh (type, resolution, and configuration) was suitable and conjugate heat transfer was properly considered. However, they over-predicted the magnitude of the circumferential variation of the rod surface temperature and could not capture its peak azimuthal locations for a central rod in the wake of the MVG. These discrepancies in the rod surface temperature were probably because the steady RANS approach could not capture unsteady, large-scale cross-flow fluctuations and qualitative cross-flow pattern change due to the laterally confined test section. Based on this benchmarking study, lessons and recommendations about experimental methods as well as CFD methods were also provided for the future research.

  11. Craniofacial Morphology and Growth Comparisons in Children With Robin Sequence, Isolated Cleft Palate, and Unilateral Complete Cleft Lip and Palate

    DEFF Research Database (Denmark)

    Hermann, N. V.; Kreiborg, S.; Darvann, Tron Andre

    2003-01-01

    and posterior height, wide nasal cavity, short mandible, bimaxillary retrognathia, and reduced pharyngeal airway. The shortest mandible was found in RS followed by ICP and UCCLP; the pharyngeal airway was reduced in RS and ICP, compared with UCCLP; and the maxillary complex and nasal cavity were wider in UCCLP...

  12. Korean round-robin result for new international program to assess the reliability of emerging nondestructive techniques

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Kyung Cho; Kim, Jin Gyum; Kang, Sung Sik; Jhung, Myung Jo [Korea Institute of Nuclear Safety, Daejeon (Korea, Republic of)

    2017-04-15

    The Korea Institute of Nuclear Safety, as a representative organization of Korea, in February 2012 participated in an international Program to Assess the Reliability of Emerging Nondestructive Techniques initiated by the U.S. Nuclear Regulatory Commission. The goal of the Program to Assess the Reliability of Emerging Nondestructive Techniques is to investigate the performance of emerging and prospective novel nondestructive techniques to find flaws in nickel-alloy welds and base materials. In this article, Korean round-robin test results were evaluated with respect to the test blocks and various nondestructive examination techniques. The test blocks were prepared to simulate large-bore dissimilar metal welds, small-bore dissimilar metal welds, and bottom-mounted instrumentation penetration welds in nuclear power plants. Also, lessons learned from the Korean round-robin test were summarized and discussed.

  13. Round robin test programmes in the reliability of thick section ultrasonic inspections: state of the art report

    International Nuclear Information System (INIS)

    Watkins, B.

    1987-03-01

    Inspection reliability is firstly defined and it is shown how difficult it is to be assessed as the influence of such factors as human performance, equipment malfunction and intrinsic technique capability are difficult to quantify. The manufacture of round robin test specimens is then considered: types of flaw, fabrication of test samples. The results of various round robin test programmes that have been carried out to determine both the capability and reliability of NDE to detect and size flaws in steel section for thick sections directly relevant to the requirements of the nuclear industry, are then reviewed and discussed: US Pressure Vessel research committee programme, PISC I Programme, the defect detection trials, and PISC II Programme

  14. ROBINS-I: a tool for assessing risk of bias in non-randomised studies of interventions

    OpenAIRE

    Sterne, Jonathan AC; Hern?n, Miguel A; Reeves, Barnaby C; Savovi?, Jelena; Berkman, Nancy D; Viswanathan, Meera; Henry, David; Altman, Douglas G; Ansari, Mohammed T; Boutron, Isabelle; Carpenter, James R; Chan, An-Wen; Churchill, Rachel; Deeks, Jonathan J; Hr?bjartsson, Asbj?rn

    2016-01-01

    Non-randomized studies of the effects of interventions are critical to many areas of health care evaluation, but their results may be biased. It is therefore important to understand and appraise their strengths and weaknesses. We developed ROBINS-I (“Risk Of Bias In Non-randomized Studies - of Interventions”), a new tool for evaluating risk of bias in estimates of the comparative effectiveness (harm or benefit) of interventions from studies that did not use randomization to allocate units (in...

  15. On solving wave equations on fixed bounded intervals involving Robin boundary conditions with time-dependent coefficients

    Science.gov (United States)

    van Horssen, Wim T.; Wang, Yandong; Cao, Guohua

    2018-06-01

    In this paper, it is shown how characteristic coordinates, or equivalently how the well-known formula of d'Alembert, can be used to solve initial-boundary value problems for wave equations on fixed, bounded intervals involving Robin type of boundary conditions with time-dependent coefficients. A Robin boundary condition is a condition that specifies a linear combination of the dependent variable and its first order space-derivative on a boundary of the interval. Analytical methods, such as the method of separation of variables (SOV) or the Laplace transform method, are not applicable to those types of problems. The obtained analytical results by applying the proposed method, are in complete agreement with those obtained by using the numerical, finite difference method. For problems with time-independent coefficients in the Robin boundary condition(s), the results of the proposed method also completely agree with those as for instance obtained by the method of separation of variables, or by the finite difference method.

  16. The First SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-1)

    Science.gov (United States)

    Hooker, Stanford B. (Editor); Firestone, Elaine R. (Editor); Claustre, Herve; Ras, Josephine; VanHeukelem, Laurie; Berthon, Jean-Francois; Targa, Cristina; vanderLinde, Dirk; Barlow, Ray; Sessions, Heather

    2001-01-01

    Four laboratories, which had contributed to various aspects of SeaWiFS calibration and validation activities, participated in the first SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-1): Horn Point Laboratory (USA), the Joint Research Centre (Italy), the Laboratoire de Physique et Chimie Marines (France), and the Marine and Coastal Management group (South Africa). The analyses of the data are presented in Chapter 1 and the individual methods of the four groups are presented in Chapters 2-5. The average (or overall) conclusions of the round-robin are derived from 12 in situ stations occupied during a cruise in the Mediterranean Sea, although, only 11 stations are used in the analyses. The data set is composed of 12 replicates taken during each sampling opportunity with 3 replicates going to each of the 4 laboratories. The average (or overall) results from the intercomparison of 15 pigments or pigment associations are as follows (in some cases, data subsets that exclude pigments which were not analyzed by all the laboratories, or that had unusually large variances, are used to exclude a variety of problematic pigments): a) the accuracy of the four methods in determining the concentration of total chlorophyll a is 7.9%, (one method did not separate mono- and divinyl chlorophyll a, and if the samples containing significant divinyl chlorophyll a concentrations are ignored, the four methods have an accuracy of 6.7%); b) the accuracy in determining the full set of pigments is 19.1%; c) there is a reduction in accuracy of approximately - 12.2% for every decade (factor of 10) decrease in concentration (based on a data subset); d) the precision of the four methods using a subset data is 8.617( 6.2% for an edited subset); e) the repeatability of the four methods using the subset data is 9.2% (7.2%; for an edited subset, and f) the reproducibility of the four methods using the subset data is 21.31% (15.0% for an edited subset).

  17. The Robin, Erithacus Rubecula (Passeriformes, Turdidae, As a Component of Autotrophic Consortia of Forest Cenoses, Northeast Ukraine

    Directory of Open Access Journals (Sweden)

    Chaplygina A. B.

    2016-08-01

    Full Text Available The role of the robin, Erithacus rubecula Linnaeus, 1758 as a consort of autotrophic consortia is considered. It has been found that representatives of 9 higher taxa of animals (Mammalia, Aves, Gastropoda, Insecta, Arachnida, Acarina, Malacostraca, Diplopoda, Clitellata have trophic and topical links with the robin. At the same time, the robin is a consort of determinants of autotrophic consortia, which core is represented mostly by dominating species of deciduous trees (Quercus robur Linnaeus, 1753 (24.6 %, Tilia cordata Miller, 1768 (17.5 %, Acer platanoides Linnaeus, 1753 (22.8 %, Acer campestre Linnaeus, 1753, and also by sedges (Carex sp. and grasses (Poaceae. The robin also belongs to the concentre of the second and higher orders as a component of forest biogeocenoses and forms a complex trophic system. In the diet of its nestlings, there have been found 717 objects from 32 invertebrate taxa, belonging to the phylums Arthropoda (99.2 %, 31 species and Annelida (0.8 %, 1 species. The phylum Arthropoda was represented by the most numerous class Insecta (76.9 %, in which 10 orders (Lepidoptera (46.8 % dominates and 20 families were recorded, and also by the classes Arachnida (15.0 %, Malacostraca (5.3 % and Diplopoda (1.9 %. The invertebrate species composition was dominated by representatives of a trophic group of zoophages (14 species; 43.8 %; the portion of phytophages (7 species; 21.9 %, saprophages (18.7 %, and necrophages (15.6 % was the less. The highest number of food items was represented by phytophages (N = 717; 51 %, followed by zoophages (34 %, saprophages (12 %, and necrophages (3 %. The difference among study areas according to the number of food items and the number of species in the robin nestling diet is shown. In NNP “HF”, the highest number of food items was represented by phytophages - 47 % (N = 443, whereas zoophages were the most species-rich group (43.3 %, 13 species. In NNP “H”, phytophages also prevailed in

  18. Stainless Steel Round Robin Test: Centrifugally cast stainless steel screening phase

    Energy Technology Data Exchange (ETDEWEB)

    Bates, D J; Doctor, S R; Heasler, P G; Burck, E

    1987-10-01

    This report presents the results of the Centrifugally Cast Stainless Steel Round Robin Test (CCSSRRT). The CCSSRRT is the first phase of an effort to investigate and improve the capability and reliability of NDE inspections of light water reactor piping systems. This phase was a screening test to identify the most promising procedures presently available for CCSS. The next phase will be an in-depth program to evaluate the capability and reliability of inservice inspections (ISI) for piping. In the CCSSRRT, 15 centrifugally cast stainless steel pipe sections containing welds and laboratory-grown thermal fatigue cracks in both columnar and equiaxed base material were used. These pipe specimens were inspected by a total of 18 teams from Europe and the United States using a variety of NDE techniques, mostly ultrasonic (UT). The inspections were carried out at the team's facilities and included inspections from both sides of the weld and inspections restricted to one side of the weld. The results of the CCSSRRT make it apparent that a more detailed study on the capability and reliability of procedures to inspect stainless steel materials is needed to better understand the specific material and flaw properties and how they affect the outcome of an inspection.

  19. Large anterior temporal Virchow-Robin spaces: unique MR imaging features

    Energy Technology Data Exchange (ETDEWEB)

    Lim, Anthony T. [Monash University, Neuroradiology Service, Monash Imaging, Monash Health, Melbourne, Victoria (Australia); Chandra, Ronil V. [Monash University, Neuroradiology Service, Monash Imaging, Monash Health, Melbourne, Victoria (Australia); Monash University, Department of Surgery, Faculty of Medicine, Nursing and Health Sciences, Melbourne (Australia); Trost, Nicholas M. [St Vincent' s Hospital, Neuroradiology Service, Melbourne (Australia); McKelvie, Penelope A. [St Vincent' s Hospital, Anatomical Pathology, Melbourne (Australia); Stuckey, Stephen L. [Monash University, Neuroradiology Service, Monash Imaging, Monash Health, Melbourne, Victoria (Australia); Monash University, Southern Clinical School, Faculty of Medicine, Nursing and Health Sciences, Melbourne (Australia)

    2015-05-01

    Large Virchow-Robin (VR) spaces may mimic cystic tumor. The anterior temporal subcortical white matter is a recently described preferential location, with only 18 reported cases. Our aim was to identify unique MR features that could increase prospective diagnostic confidence. Thirty-nine cases were identified between November 2003 and February 2014. Demographic, clinical data and the initial radiological report were retrospectively reviewed. Two neuroradiologists reviewed all MR imaging; a neuropathologist reviewed histological data. Median age was 58 years (range 24-86 years); the majority (69 %) was female. There were no clinical symptoms that could be directly referable to the lesion. Two thirds were considered to be VR spaces on the initial radiological report. Mean maximal size was 9 mm (range 5-17 mm); majority (79 %) had perilesional T2 or fluid-attenuated inversion recovery (FLAIR) hyperintensity. The following were identified as potential unique MR features: focal cortical distortion by an adjacent branch of the middle cerebral artery (92 %), smaller adjacent VR spaces (26 %), and a contiguous cerebrospinal fluid (CSF) intensity tract (21 %). Surgery was performed in three asymptomatic patients; histopathology confirmed VR spaces. Unique MR features were retrospectively identified in all three patients. Large anterior temporal lobe VR spaces commonly demonstrate perilesional T2 or FLAIR signal and can be misdiagnosed as cystic tumor. Potential unique MR features that could increase prospective diagnostic confidence include focal cortical distortion by an adjacent branch of the middle cerebral artery, smaller adjacent VR spaces, and a contiguous CSF intensity tract. (orig.)

  20. EC static high-temperature leach test. Summary report of an European Community interlaboratory round robin

    International Nuclear Information System (INIS)

    Koennecke, R.; Kirsch, J.

    1985-01-01

    The results of an interlaboratory static high-temperature leach test conducted by the Commission of the European Communities in 1983 over a period of 9 months are compiled and statistically evaluated. A total of 12 laboratories - 10 from Member States of the EC and one from Finland and the USA - provided information concerning the test method and the analytical test results in the frame of a round robin test (RRT). All together these laboratories tested 366 waste from specimens of the borosilicate glass UK 209 containing simulated high-level radioactive waste. Leach tests were performed on the basis of the ''Document on the EC static high-temperature leach test method'' in autoclaves at leaching temperatures of 90 0 C, 110 0 C, 150 0 C, and 190 0 C over time periods of 3,7,14,28 and 56 days using dionized water as leachant. The resulting leachates were analysed for the elemental concentrations of Si,B,Sr,Nd and Cs by all laboratories and for the concentrations of the optional elements Na, Al,Ce,Mo,Cr,Fe,Li,Mg and Zn by some of the participating laboratories. Additionally, the F content of the blank leachates was analysed by all laboratories

  1. Round Robin test for the determination of nitrogen concentration in solid Lithium

    International Nuclear Information System (INIS)

    Favuzza, P.; Antonelli, A.; Furukawa, T.; Groeschel, F.; Hedinger, R.; Higashi, T.; Hirakawa, Y.; Iijima, M.; Ito, Y.; Kanemura, T.; Knaster, J.; Kondo, H.; Miccichè, G.; Nitti, F.S.; Ohira, S.; Severi, M.; Sugimoto, M.; Suzuki, A.; Traversi, R.; Wakai, E.

    2016-01-01

    Highlights: • Nitrogen contained in solid Lithium is converted into Ammonium ion. • Ammonium ion is suitably quantified by ionic chromatograph or by Ammonia sensor. • Good agreement of the partner’s results has been achieved. • Maximum operative reproducibility and blank subtraction are necessary. - Abstract: Three different partners, ENEA, JAEA ed University of Tokyo, have been involved during 2014–2015 in the Round Robin experimentation for the assessment of the soundness of the analitycal procedure for the determination of the Nitrogen impurities contained inside a solid Lithium sample. Two different kinds of Lithium samples, differing by about an order of magnitude in Nitrogen concentration (∼230 wppm; ∼20–30 wppm), have been selected for this cross analysis. The agreement of the achieved results appears very good for what concerns the most concentrated Lithium and indicates each partner’s procedure is appropriate and intrinsecally able to lead to meaningful values, characterized by a relative uncertainty of just few %. The smaller agreement in the case of the less concentrated Lithium anyway points out that particular attention must be paid to reduce as much as possible any source of external contamination and highlights the importance of the proper blank subtraction.

  2. Round-robin activities on finite element analyses of elastic-plastic fracture in Japan

    International Nuclear Information System (INIS)

    Shimakawa, T.; Takahashi, Y.; Yagawa, G.

    1989-01-01

    The establishment of the leak-before-break (LBB) concept requires a method to evaluate the fracture characteristics. The finite element method can be used for this purpose but the solution is more or less influenced by the method employed. In this study, two round-robin analyses are performed for three-dimensional crack problems. The first problem is for surface crack growth in a carbon steel plate subjected to tension loading. Ten solutions are obtained by ten participants, and calculated results are compared with each other as to the applied load, displacement and J-integral. Though the relation between applied load and displacement is affected by modeling of the stress-strain curve, fairly good agreement is obtained between the solutions. The second problem is for a circumferential part-through crack in a carbon steel pipe subjected to a bending moment. Nine solutions are obtained by eight participants. The difference between the solutions is relatively significant as to the relation between J-integral and load-point displacement. A discussion is made about the sources of difference between each solution. (orig.)

  3. Round Robin test for the determination of nitrogen concentration in solid Lithium

    Energy Technology Data Exchange (ETDEWEB)

    Favuzza, P., E-mail: paolo.favuzza@enea.it [ENEA Center, Via Madonna del Piano 10, 50019 Sesto Fiorentino (Italy); Antonelli, A. [ENEA Research Center, Brasimone, 40035, Camugnano (Italy); Furukawa, T. [JAEA Research Center, Tokai-mura, Ibaraki (Japan); Groeschel, F. [KIT Research Center, Hermann-von-Helmholtz-Platz 1,76344 Eggenstein-Leopoldshafen (Germany); Hedinger, R. [F4E Research Center, Boltzmannstraße 2, 85748 Garching (Germany); Higashi, T. [University of Tokyo (Japan); Hirakawa, Y.; Iijima, M.; Ito, Y.; Kanemura, T. [JAEA Research Center, Tokai-mura, Ibaraki (Japan); Knaster, J. [IFMIF-EVEDA Project Team, Rokkasho (Japan); Kondo, H. [JAEA Research Center, Tokai-mura, Ibaraki (Japan); Miccichè, G.; Nitti, F.S. [ENEA Research Center, Brasimone, 40035, Camugnano (Italy); Ohira, S. [JAEA Research Center, Tokai-mura, Ibaraki (Japan); Severi, M. [University of Firenze, Via della Lastruccia 3, 50019 Sesto Fiorentino (Italy); Sugimoto, M. [JAEA Research Center, Rokkasho (Japan); Suzuki, A. [University of Tokyo (Japan); Traversi, R. [University of Firenze, Via della Lastruccia 3, 50019 Sesto Fiorentino (Italy); Wakai, E. [JAEA Research Center, Tokai-mura, Ibaraki (Japan)

    2016-06-15

    Highlights: • Nitrogen contained in solid Lithium is converted into Ammonium ion. • Ammonium ion is suitably quantified by ionic chromatograph or by Ammonia sensor. • Good agreement of the partner’s results has been achieved. • Maximum operative reproducibility and blank subtraction are necessary. - Abstract: Three different partners, ENEA, JAEA ed University of Tokyo, have been involved during 2014–2015 in the Round Robin experimentation for the assessment of the soundness of the analitycal procedure for the determination of the Nitrogen impurities contained inside a solid Lithium sample. Two different kinds of Lithium samples, differing by about an order of magnitude in Nitrogen concentration (∼230 wppm; ∼20–30 wppm), have been selected for this cross analysis. The agreement of the achieved results appears very good for what concerns the most concentrated Lithium and indicates each partner’s procedure is appropriate and intrinsecally able to lead to meaningful values, characterized by a relative uncertainty of just few %. The smaller agreement in the case of the less concentrated Lithium anyway points out that particular attention must be paid to reduce as much as possible any source of external contamination and highlights the importance of the proper blank subtraction.

  4. Robin Ganellin gives his views on medicinal chemistry and drug discovery. Interview by Stephen L. Carney.

    Science.gov (United States)

    Ganellin, C Robin

    2004-02-15

    Robin Ganellin was born in East London and studied chemistry at Queen Mary College, London, receiving a PhD in 1958 under Professor Michael Dewar for his research on tropylium chemistry. He joined Smith Kline & French Laboratories (SK&F) in the UK in 1958 and was one of the co-inventors of the revolutionary drug cimetidine (Tagamet(R)) He subsequently became Vice-President for Research at the company's Welwyn facility. In 1986 he was awarded a DSc from London University for his work on the medicinal chemistry of drugs acting at histamine receptors and was also made a Fellow of the Royal Society and appointed to the SK&F Chair of Medicinal Chemistry at University College London, where he is now Emeritus Professor of Medicinal Chemistry. Professor Ganellin has been honoured extensively, including such awards as the Royal Society of Chemistry Award for Medicinal Chemistry, their Tilden Medal and Lectureship and their Adrien Albert Medal and Lectureship, Le Prix Charles Mentzer de France, the ACS Division of Medicinal Chemistry Award, the Society of Chemical Industry Messel Medal and the Society for Drug Research Award for Drug Discovery. He is a past Chairman of the Society for Drug Research, was President of the Medicinal Chemistry Section of IUPAC, and is currently Chairman of the IUPAC Subcommittee on Medicinal Chemistry and Drug Development.

  5. Age, sex and social influences on adult survival in the cooperatively breeding Karoo Scrub-robin

    Science.gov (United States)

    Lloyd, Penn; Martin, Thomas E.; Taylor, Andrew; Braae, Anne; Altwegg, Res

    2016-01-01

    Among cooperatively breeding species, helpers are hypothesised to increase the survival of breeders by reducing breeder workload in offspring care and increased group vigilance against predators. Furthermore, parental nepotism or other benefits of group living may provide a survival benefit to young that delay dispersal to help. We tested these hypotheses in the Karoo Scrub-robin (Cercotrichas coryphaeus), a long-lived, and facultative cooperatively breeding species in which male helpers make substantial contributions to the care of young. We found that annual breeder survival in the presence of helpers did not differ detectably from breeders without helpers or breeders that lost helpers. Furthermore, helpers did not gain a survival benefit from deferred breeding; apparent survival did not differ detectably between male helpers and male breeders followed from one year old. These results are consistent with other studies suggesting a lack of adult survival benefits among species where breeders do not substantially reduce workloads when helpers are present. They are also consistent with the hypothesis that males that delay dispersal make the ‘best of a bad job’ by helping on their natal territory to gain indirect fitness benefits when they are unable to obtain a territory vacancy nearby.

  6. The effect of pyrazine odor on avoidance learning and memory in wild robins Erithacus rubecula

    Directory of Open Access Journals (Sweden)

    Emma C. SIDDALL, Nicola M. MARPLES

    2011-04-01

    Full Text Available Toxic insects advertise their defended state to potential predators using warning displays. Frequently these displays use cues through more than one sensory modality, and combine color, smell and sound to produce a multimodal warning display. Signalling through more than one sensory pathway may enhance the rate of avoidance learning, and the memorability of the learned avoidance. A common insect warning odor, pyrazine, has previously been shown to increase the rate of learned avoidance of unpalatable yellow prey by domestic chicks (Gallus gallus domesticus, and the odor also improved memory of this learned avoidance. However, to date no research has examined this response to pyrazine odor using wild birds under natural conditions. This study used wild robins (Erithacus rubecula to investigate whether wild birds avoided yellow baits that smelled of pyrazine more strongly than those presented with no odor. The results provide some evidence that pyrazine odor does increase the level of protection an aposematic insect gains from a wild avian predator, but that the effect of pyrazine on learned avoidance was much weaker than was found with domestic chicks [Current Zoology 57 (2: 208–214, 2011].

  7. Practical round-robin differential-phase-shift quantum key distribution

    International Nuclear Information System (INIS)

    Zhang, Zhen; Yuan, Xiao; Cao, Zhu; Ma, Xiongfeng

    2017-01-01

    The security of quantum key distribution (QKD) relies on the Heisenberg uncertainty principle, with which legitimate users are able to estimate information leakage by monitoring the disturbance of the transmitted quantum signals. Normally, the disturbance is reflected as bit flip errors in the sifted key; thus, privacy amplification, which removes any leaked information from the key, generally depends on the bit error rate. Recently, a round-robin differential-phase-shift QKD protocol for which privacy amplification does not rely on the bit error rate (Sasaki et al 2014 Nature 509 475) was proposed. The amount of leaked information can be bounded by the sender during the state-preparation stage and hence, is independent of the behavior of the unreliable quantum channel. In our work, we apply the tagging technique to the protocol and present a tight bound on the key rate and employ a decoy-state method. The effects of background noise and misalignment are taken into account under practical conditions. Our simulation results show that the protocol can tolerate channel error rates close to 50% within a typical experiment setting. That is, there is a negligible restriction on the error rate in practice. (paper)

  8. Assessing Fidelity to Suicide Reporting Guidelines in Canadian News Media: The Death of Robin Williams.

    Science.gov (United States)

    Creed, Michael; Whitley, Rob

    2017-05-01

    Mindset is a short recently-published booklet funded by the Mental Health Commission of Canada outlining evidence-based guidelines and best practices for journalists writing about mental health and suicide. Our study aimed to assess fidelity to Mindset recommendations in Canadian newspaper reports of a recent celebrity suicide. A secondary aim is to identify common themes discussed in these newspaper articles. Articles about Robin Williams' suicide from major Canadian newspapers were gathered and coded for presence or absence of each of the 14 recommendations in the "Covering Suicide" section of Mindset. A threshold of 80% was set to test for high fidelity to the guidelines. A qualitative content analysis of the articles was also undertaken to discern common themes and social issues discussed in the articles. Fifty-five per cent of articles surpassed the 80% threshold for high fidelity, while 85% applied at least 70% of the recommendations. The recommendation most commonly overlooked was "Do tell others considering suicide how they can get help," which was absent in 73% of articles. The most common themes discussed were those of addictions and stigma. The news articles generally follow the evidence-based guidelines regarding the reporting of suicide set out in Mindset. This is a welcome development. Future research should continue to examine reporting of suicide to assess for further improvements, while also examining the wider impact of Mindset on the reporting of mental illness per se.

  9. Nonlinear model updating applied to the IMAC XXXII Round Robin benchmark system

    Science.gov (United States)

    Kurt, Mehmet; Moore, Keegan J.; Eriten, Melih; McFarland, D. Michael; Bergman, Lawrence A.; Vakakis, Alexander F.

    2017-05-01

    We consider the application of a new nonlinear model updating strategy to a computational benchmark system. The approach relies on analyzing system response time series in the frequency-energy domain by constructing both Hamiltonian and forced and damped frequency-energy plots (FEPs). The system parameters are then characterized and updated by matching the backbone branches of the FEPs with the frequency-energy wavelet transforms of experimental and/or computational time series. The main advantage of this method is that no nonlinearity model is assumed a priori, and the system model is updated solely based on simulation and/or experimental measured time series. By matching the frequency-energy plots of the benchmark system and its reduced-order model, we show that we are able to retrieve the global strongly nonlinear dynamics in the frequency and energy ranges of interest, identify bifurcations, characterize local nonlinearities, and accurately reconstruct time series. We apply the proposed methodology to a benchmark problem, which was posed to the system identification community prior to the IMAC XXXII (2014) and XXXIII (2015) Conferences as a "Round Robin Exercise on Nonlinear System Identification". We show that we are able to identify the parameters of the non-linear element in the problem with a priori knowledge about its position.

  10. The Influence of Different Cover Types on American Robin Nest Success in Organic Agroecosystems

    Directory of Open Access Journals (Sweden)

    James R. Brandle

    2013-08-01

    Full Text Available There are many opportunities for biodiversity conservation in organic farm systems. Successful and sustainable conservation efforts in organic systems, however, need to measure appropriate outcomes. In particular, data are needed on the breeding success of associated wildlife species. We measured nesting success of the American Robin (Turdus migratorius in woodlands embedded within eight organic farms in eastern Nebraska. We modeled daily nest survival rate to identify land use and land cover patterns that optimize conservation of birds in organic farm systems. The percentage of a crop in the fields adjacent to linear woodlands best predicted daily survival rate. Daily survival rate was lower in fields adjacent to wheat and greater in woodlands adjacent to soybean fields, though the latter may be a weak effect. There was no evidence that reducing the area allocated to organic crop production would improve daily survival rate but rather an evidence of a patch-matrix interaction. These results suggest that, if suitable nesting sites exist, organic farmers can complement local conservation efforts without losing working farmland.

  11. An audit to assess the consequences of the use of a pluripotential risk syndrome: the case to move on from "psychosis risk syndrome (PRS) ".

    Science.gov (United States)

    Agius, Mark; Zaman, Rashid; Hanafy, Dean

    2013-09-01

    An audit has been carried out of the patients who have been assessed using the CAARMS tool in order to assess patients who have been judged to have a prodromal psychotic syndrome. Instead of advocating PRS, Johannessen & McGorry (Johannessen 2010), have offered an alternative: a 'Pluripotent risk syndrome'. This less specific prodrome reflects the unpredictable nature of "Ultra-High Risk" states which have been shown to be more likely to develop into a non-psychotic mood disorder than schizophrenia (Hoon 2012). The corollary this is thus; could patients who exhibit significant depressive features (regardless of diagnosis) be initially identified as having a 'Pluripotent risk syndrome'? Ten adult patients (6 males & 4 females, aged 19-26 years old) with four broad psychiatric diagnoses (Depression, Schizoaffective disorder, Borderline personality disorder and psychotic illness) were chosen from an anonimised database of the patients and their symptomatology as assessed by CAARMS was retrospectively assessed to see if the presence of depressive symptoms supported the case for a "Pluripotent risk syndrome". Though patients diagnosed with depression frequently exhibited depressive symptoms, psychotic symptoms were also apparent, albeit in comparatively decreased severity. Patients diagnosed with schizoaffective disorder had depressive symptoms more frequently than psychotic symptoms, but these were comparatively less severe. Borderline personality disorder patients exhibited depressive symptoms more frequently than psychotic symptoms. Psychotic illnesses frequently had depressive symptoms, but more typically (and unsurprisingly) had comparatively more severe psychotic than depressive symptoms. Hence we propose that the concept of a "Pluripotent risk syndrome" is in our view born out.

  12. Reliability of case definitions for public health surveillance assessed by Round-Robin test methodology

    Directory of Open Access Journals (Sweden)

    Claus Hermann

    2006-05-01

    Full Text Available Abstract Background Case definitions have been recognized to be important elements of public health surveillance systems. They are to assure comparability and consistency of surveillance data and have crucial impact on the sensitivity and the positive predictive value of a surveillance system. The reliability of case definitions has rarely been investigated systematically. Methods We conducted a Round-Robin test by asking all 425 local health departments (LHD and the 16 state health departments (SHD in Germany to classify a selection of 68 case examples using case definitions. By multivariate analysis we investigated factors linked to classification agreement with a gold standard, which was defined by an expert panel. Results A total of 7870 classifications were done by 396 LHD (93% and all SHD. Reporting sensitivity was 90.0%, positive predictive value 76.6%. Polio case examples had the lowest reporting precision, salmonellosis case examples the highest (OR = 0.008; CI: 0.005–0.013. Case definitions with a check-list format of clinical criteria resulted in higher reporting precision than case definitions with a narrative description (OR = 3.08; CI: 2.47–3.83. Reporting precision was higher among SHD compared to LHD (OR = 1.52; CI: 1.14–2.02. Conclusion Our findings led to a systematic revision of the German case definitions and build the basis for general recommendations for the creation of case definitions. These include, among others, that testable yes/no criteria in a check-list format is likely to improve reliability, and that software used for data transmission should be designed in strict accordance with the case definitions. The findings of this study are largely applicable to case definitions in many other countries or international networks as they share the same structural and editorial characteristics of the case definitions evaluated in this study before their revision.

  13. First report on a European round robin for slope measuring profilers

    Science.gov (United States)

    Rommeveaux, Amparo; Thomasset, Muriel; Cocco, Daniele; Siewert, Frank

    2005-08-01

    In the framework of the European COoperation in the field of Scientific and Technical research action on "X-ray and Neutron Optic" (COST P7) and following the decision announced in the last International Workshop on Metrology for X-ray and neutron optic (Grenoble, April 2004), the metrology facilities of four European synchrotrons, Bessy, Elettra, ESRF and Soleil, have decided and started a program of instrument inter-comparison. Other synchrotrons are joining us and further interested Institutions are invited to participate in this open measurement comparison. The metrology instruments involved are different kinds of direct slope measurement devices, like the well known Long Trace Profiler (in house made or modified) and the Bessy N.O.M.. The Round Robin was started with 2 flat and 2 spherical mirrors (three made of Zerodur and one of fused silica) made available by Bessy and Elettra. A short radius of curvature spherical mirror of Silicon from SOLEIL was later added. First results show a very close match between the measurements of all facilities provided that the same procedures are followed. In particular, a special attention has to be given to the way of supporting the reference objects, as it will be illustrated by some examples. Another important issue is the characterization of the systematic errors of the different instruments and how they can be reduced or eliminated. The paper expects to open a discussion on the performances of different commercial and custom made or modified profilometers, and over standard procedures for calibration testing, including the definition of standard reference surfaces.

  14. Features of Virchow-Robin spaces in newly diagnosed multiple sclerosis patients

    Energy Technology Data Exchange (ETDEWEB)

    Etemadifar, Masoud [Department of Clinical and Biological Sciences, Division of Neurology, San Luigi Gonzaga School of Medicine, Orbassano (Torino), Turin (Italy); Department of Neurology, Isfahan University of Medical Sciences, Isfahan (Iran, Islamic Republic of); Isfahan Research Committee of Multiple Sclerosis (IRCOMS), Isfahan University of Medical Sciences, Isfahan (Iran, Islamic Republic of); Hekmatnia, Ali; Tayari, Nazila [Department of Radiology, Isfahan University of Medical Sciences, Isfahan (Iran, Islamic Republic of); Kazemi, Mojtaba [Department of Neurology, Isfahan University of Medical Sciences, Isfahan (Iran, Islamic Republic of); Ghazavi, Amirhossein [Department of Radiology, Isfahan University of Medical Sciences, Isfahan (Iran, Islamic Republic of); Akbari, Mojtaba [Department of Epidemiology and Statistics, Isfahan University of Medical Sciences, Isfahan (Iran, Islamic Republic of); Maghzi, Amir-Hadi, E-mail: maghzi@edc.mui.ac.ir [Isfahan Research Committee of Multiple Sclerosis (IRCOMS), Isfahan University of Medical Sciences, Isfahan (Iran, Islamic Republic of); Neuroimmunology Unit, Centre for Neuroscience and Trauma, Blizard Institute of Cell and Molecular Science, Barts and the London School of Medicine and Dentistry, London (United Kingdom); Isfahan Neurosciences Research Center, Isfahan University of Medical Sciences, Isfahan (Iran, Islamic Republic of)

    2011-11-15

    Background: Virchow-Robin spaces (VRSs) are perivascular pia-lined extensions of the subarachnoid space around the arteries and veins as they enter the brain parenchyma. These spaces are responsible for inflammatory processes within the brain. Objectives: This study was designed to shed more light on the location, size and shape of VRSs on 3 mm slice thickness, 1.5 Tesla MRI scans of newly diagnosed MS patients in Isfahan, Iran and compare the results with healthy age- and sex-matched controls. Methods: We evaluated MRI scans of 73 MS patients obtained within 3 months of MS onset and compared them with MRI scans from 73 age- and sex-matched healthy volunteers. Three mm section proton density, T2W and FLAIR MR images were obtained for all subjects. The location, size and shape of VRSs were compared between the two groups. Results: The total number of VRSs was significantly more in the MS group (p < 0.001). The distribution of VRSs were significantly more located in the high convexity areas in the MS group (p < 0.001), while there was no significant differences in other regions. The round shaped VRSs were significantly more detected on MRI scans of MS patients, and curvilinear shapes were significantly more frequently observed in healthy volunteers, however there were no significant differences for oval shaped VRSs between the two groups. The number of VRSs with the size over than 2 mm were significantly more observed in the MS groups compared to controls. We also observed some differences in the characteristics of VRSs between the genders in the MS group. Conclusion: The results of this study shed more light on the usefulness of VRSs as an MRI marker for the disease. In addition, according to our results VRSs might also have implication to determine the prognosis of the disease. However, larger studies with more advanced MRI techniques are required to confirm our results.

  15. Features of Virchow-Robin spaces in newly diagnosed multiple sclerosis patients

    International Nuclear Information System (INIS)

    Etemadifar, Masoud; Hekmatnia, Ali; Tayari, Nazila; Kazemi, Mojtaba; Ghazavi, Amirhossein; Akbari, Mojtaba; Maghzi, Amir-Hadi

    2011-01-01

    Background: Virchow-Robin spaces (VRSs) are perivascular pia-lined extensions of the subarachnoid space around the arteries and veins as they enter the brain parenchyma. These spaces are responsible for inflammatory processes within the brain. Objectives: This study was designed to shed more light on the location, size and shape of VRSs on 3 mm slice thickness, 1.5 Tesla MRI scans of newly diagnosed MS patients in Isfahan, Iran and compare the results with healthy age- and sex-matched controls. Methods: We evaluated MRI scans of 73 MS patients obtained within 3 months of MS onset and compared them with MRI scans from 73 age- and sex-matched healthy volunteers. Three mm section proton density, T2W and FLAIR MR images were obtained for all subjects. The location, size and shape of VRSs were compared between the two groups. Results: The total number of VRSs was significantly more in the MS group (p < 0.001). The distribution of VRSs were significantly more located in the high convexity areas in the MS group (p < 0.001), while there was no significant differences in other regions. The round shaped VRSs were significantly more detected on MRI scans of MS patients, and curvilinear shapes were significantly more frequently observed in healthy volunteers, however there were no significant differences for oval shaped VRSs between the two groups. The number of VRSs with the size over than 2 mm were significantly more observed in the MS groups compared to controls. We also observed some differences in the characteristics of VRSs between the genders in the MS group. Conclusion: The results of this study shed more light on the usefulness of VRSs as an MRI marker for the disease. In addition, according to our results VRSs might also have implication to determine the prognosis of the disease. However, larger studies with more advanced MRI techniques are required to confirm our results.

  16. The Second SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-2)

    Science.gov (United States)

    2005-01-01

    Eight international laboratories specializing in the determination of marine pigment concentrations using high performance liquid chromatography (HPLC) were intercompared using in situ samples and a variety of laboratory standards. The field samples were collected primarily from eutrophic waters, although mesotrophic waters were also sampled to create a dynamic range in chlorophyll concentration spanning approximately two orders of magnitude (0.3 25.8 mg m-3). The intercomparisons were used to establish the following: a) the uncertainties in quantitating individual pigments and higher-order variables (sums, ratios, and indices); b) an evaluation of spectrophotometric versus HPLC uncertainties in the determination of total chlorophyll a; and c) the reduction in uncertainties as a result of applying quality assurance (QA) procedures associated with extraction, separation, injection, degradation, detection, calibration, and reporting (particularly limits of detection and quantitation). In addition, the remote sensing requirements for the in situ determination of total chlorophyll a were investigated to determine whether or not the average uncertainty for this measurement is being satisfied. The culmination of the activity was a validation of the round-robin methodology plus the development of the requirements for validating an individual HPLC method. The validation process includes the measurements required to initially demonstrate a pigment is validated, and the measurements that must be made during sample analysis to confirm a method remains validated. The so-called performance-based metrics developed here describe a set of thresholds for a variety of easily-measured parameters with a corresponding set of performance categories. The aggregate set of performance parameters and categories establish a) the overall performance capability of the method, and b) whether or not the capability is consistent with the required accuracy objectives.

  17. The Fourth SeaWiFS HPLC Analysis Round-Robin Experiment (SeaHARRE-4)

    Science.gov (United States)

    Hooker, Stanford B.; Thomas, Crystal S.; van Heukelem, Laurie; Schlueter, louise; Russ, Mary E.; Ras, Josephine; Claustre, Herve; Clementson, Lesley; Canuti, Elisabetta; Berthon, Jean-Francois; hide

    2010-01-01

    Ten international laboratories specializing in the determination of marine pigment concentrations using high performance liquid chromatography (HPLC) were intercompared using in situ samples and a mixed pigment sample. Although prior Sea-viewing Wide Field-of-view Sensor (SeaWiFS) High Performance Liquid Chromatography (HPLC) Round-Robin Experiment (SeaHARRE) activities conducted in open-ocean waters covered a wide dynamic range in productivity, and some of the samples were collected in the coastal zone, none of the activities involved exclusively coastal samples. Consequently, SeaHARRE-4 was organized and executed as a strictly coastal activity and the field samples were collected from primarily eutrophic waters within the coastal zone of Denmark. The more restrictive perspective limited the dynamic range in chlorophyll concentration to approximately one and a half orders of magnitude (previous activities covered more than two orders of magnitude). The method intercomparisons were used for the following objectives: a) estimate the uncertainties in quantitating individual pigments and higher-order variables formed from sums and ratios; b) confirm if the chlorophyll a accuracy requirements for ocean color validation activities (approximately 25%, although 15% would allow for algorithm refinement) can be met in coastal waters; c) establish the reduction in uncertainties as a result of applying QA procedures; d) show the importance of establishing a properly defined referencing system in the computation of uncertainties; e) quantify the analytical benefits of performance metrics, and f) demonstrate the utility of a laboratory mix in understanding method performance. In addition, the remote sensing requirements for the in situ determination of total chlorophyll a were investigated to determine whether or not the average uncertainty for this measurement is being satisfied.

  18. Resonant alteration of propagation in guiding structures with complex Robin parameter and its magnetic-field-induced restoration

    International Nuclear Information System (INIS)

    Olendski, O.

    2011-01-01

    Highlights: → Solutions of the wave equation are analyzed for the confined circular geometry with complex Robin boundary conditions. → Sharp extremum is found in the energy dependence on the imaginary part of the extrapolation length. → Nonzero real part of the Robin length or/and magnetic field wipe out the resonance. - Abstract: Solutions of the scalar Helmholtz wave equation are derived for the analysis of the transport and thermodynamic properties of the two-dimensional disk and three-dimensional infinitely long straight wire in the external uniform longitudinal magnetic field B under the assumption that the Robin boundary condition contains extrapolation length Λ with nonzero imaginary part Λ i . As a result of this complexity, the self-adjointness of the Hamiltonian is lost, its eigenvalues E become complex too and the discrete bound states of the disk characteristic for the real Λ turn into the corresponding quasibound states with their lifetime defined by the eigenenergies imaginary parts E i . Accordingly, the longitudinal flux undergoes an alteration as it flows along the wire with its attenuation/amplification being E i -dependent too. It is shown that, for zero magnetic field, the component E i as a function of the Robin imaginary part exhibits a pronounced sharp extremum with its magnitude being the largest for the zero real part Λ r of the extrapolation length. Increasing magnitude of Λ r quenches the E i - Λ i resonance and at very large Λ r the eigenenergies E approach the asymptotic real values independent of Λ i . The extremum is also wiped out by the magnetic field when, for the large B, the energies tend to the Landau levels. Mathematical and physical interpretations of the obtained results are provided; in particular, it is shown that the finite lifetime of the disk quasibound states stems from the Λ i -induced currents flowing through the sample boundary. Possible experimental tests of the calculated effect are discussed; namely

  19. Results from an International Measurement Round Robin of III-V Triple Junction Solar Cells under Air Mass Zero

    Science.gov (United States)

    Jenkins, Phillip; Scheiman, Chris; Goodbody, Chris; Baur, Carsten; Sharps, Paul; Imaizumi, Mitsuru; Yoo, Henry; Sahlstrom, Ted; Walters, Robert; Lorentzen, Justin; hide

    2006-01-01

    This paper reports the results of an international measurement round robin of monolithic, triple-junction, GaInP/GaAs/Ge space solar cells. Eight laboratories representing national labs, solar cell vendors and space solar cell consumers, measured cells using in-house reference cells and compared those results to measurements made where each lab used the same set of reference cells. The results show that most of the discrepancy between laboratories is likely due to the quality of the standard cells rather than the measurement system or solar simulator used.

  20. Joining U.S. NRC international round robin for weld residual stress analysis. Stress analysis and validation in PWSCC mitigation program

    International Nuclear Information System (INIS)

    Maekawa, Akira; Serizawa, Hisashi; Murakawa, Hidekazu

    2012-01-01

    It is necessary to establish properly reliable weld residual stress analysis methods for accurate crack initiation and growth assessment of primary water stress corrosion cracking (PWSCC), which may occur in nickel-based dissimilar metal welds in pressurized water reactors. The U.S. Nuclear Regulatory Commission conducted an international round robin for weld residual stress analysis to improve stress analysis methods and to examine the uncertainties involved in the calculated stress values. In this paper, the results from the authors' participation in the round robin were reported. In the round robin, the weld residual stress in a nickel-based dissimilar metal weld of a pressurizer surge nozzle mock-up was computed under various analysis conditions. Based on these residual stress analysis results, a welding simulation code currently being developed that uses the iterative substructure method was validated and affecting factors on the analysis results were identified. (author)

  1. Round robin test for zirconium alloys in 400 deg C steam: results from EDF; Essais interlaboratoires de corrosion generalisee en milieu vapeur a 400 deg C d`alliages de zirconium: resultats d`EDF

    Energy Technology Data Exchange (ETDEWEB)

    Blat, M.

    1994-01-01

    The EDF Material Studies Branch has participated in the Round Robin program of uniform corrosion on zirconium alloys. The objectives of these Round Robin corrosion tests are to generate new uniform corrosion weight gain date utilizing modern zirconium alloy products and to improve the International and ASTM standards. (author). 2 tabs., 7 appendix., 2 refs.

  2. Sequence requirements of the HIV-1 protease flap region determined by saturation mutagenesis and kinetic analysis of flap mutants

    Science.gov (United States)

    Shao, Wei; Everitt, Lorraine; Manchester, Marianne; Loeb, Daniel D.; Hutchison, Clyde A.; Swanstrom, Ronald

    1997-01-01

    The retroviral proteases (PRs) have a structural feature called the flap, which consists of a short antiparallel β-sheet with a turn. The flap extends over the substrate binding cleft and must be flexible to allow entry and exit of the polypeptide substrates and products. We analyzed the sequence requirements of the amino acids within the flap region (positions 46–56) of the HIV-1 PR. The phenotypes of 131 substitution mutants were determined using a bacterial expression system. Four of the mutant PRs with mutations in different regions of the flap were selected for kinetic analysis. Our phenotypic analysis, considered in the context of published structures of the HIV-1 PR with a bound substrate analogs, shows that: (i) Met-46 and Phe-53 participate in hydrophobic interactions on the solvent-exposed face of the flap; (ii) Ile-47, Ile-54, and Val-56 participate in hydrophobic interactions on the inner face of the flap; (iii) Ile-50 has hydrophobic interactions at the distance of both the δ and γ carbons; (iv) the three glycine residues in the β-turn of the flap are virtually intolerant of substitutions. Among these mutant PRs, we have identified changes in both kcat and Km. These results establish the nature of the side chain requirements at each position in the flap and document a role for the flap in both substrate binding and catalysis. PMID:9122179

  3. Testing round robin on cyclic crack growth of low and medium sulfur A533-B steels in LWR environments

    International Nuclear Information System (INIS)

    Kitagawa, H.; Komai, K.; Nakajima, H.; Higuchi, M.

    1987-01-01

    After the facts of environmentally assisted crack growth of low alloy steel was first observed when cyclically loaded in high temperature water. The subject has been extensively studied in connection with the evaluation of the integrity of LWR pressure boundary materials. In 1977, International Cooperative Group on Cyclic Crack Growth Rate Testing Evaluation (the ICCGR group) was organized for more systematic and effective solution of the problem. Successful results have been reported on the programs of the ICCGR activity, particularly in the promotion of a couple of programs of testing round robin and the associated research. JAERI also organized a domestic group of 15 organizations as the Corrosion Fatigue Subcommittee(JCF) of the LWR Safety Research Committee to carry out the similar test program. The group has been evaluating the behavior of steels representing the range of quality for the existing Japanese LWR plants. This paper describes the present status of the Japanese domestic testing round robin and related research especially focused on the test methodology

  4. The Robin Hood method - A novel numerical method for electrostatic problems based on a non-local charge transfer

    International Nuclear Information System (INIS)

    Lazic, Predrag; Stefancic, Hrvoje; Abraham, Hrvoje

    2006-01-01

    We introduce a novel numerical method, named the Robin Hood method, of solving electrostatic problems. The approach of the method is closest to the boundary element methods, although significant conceptual differences exist with respect to this class of methods. The method achieves equipotentiality of conducting surfaces by iterative non-local charge transfer. For each of the conducting surfaces, non-local charge transfers are performed between surface elements, which differ the most from the targeted equipotentiality of the surface. The method is tested against analytical solutions and its wide range of application is demonstrated. The method has appealing technical characteristics. For the problem with N surface elements, the computational complexity of the method essentially scales with N α , where α < 2, the required computer memory scales with N, while the error of the potential decreases exponentially with the number of iterations for many orders of magnitude of the error, without the presence of the Critical Slowing Down. The Robin Hood method could prove useful in other classical or even quantum problems. Some future development ideas for possible applications outside electrostatics are addressed

  5. Evaluation of NDE Round-Robin Exercises Using the NRC Steam Generator Mockup at Argonne National Laboratory

    International Nuclear Information System (INIS)

    Muscara, Joseph; Kupperman, David S.; Bakhtiari, Sasab; Park, Jang-Yul; Shack, William J.

    2002-01-01

    This paper discusses round-robin exercises using the NRC steam generator (SG) mock-up at Argonne National Laboratory to assess inspection reliability. The purpose of the round robins was to assess the current reliability of SG tubing inservice inspection, determine the probability of detection (POD) as function of flaw size or severity, and assess the capability for sizing of flaws. For the round robin and subsequent evaluation completed in 2001, eleven teams participated. Bobbin and rotating coil mock-up data collected by qualified industry personnel were evaluated. The mock-up contains hundreds of cracks and simulations of artifacts such as corrosion deposits and tube support plates that make detection and characterization of cracks more difficult in operating steam generators than in most laboratory situations. An expert Task Group from industry, Argonne National Laboratory, and the NRC have reviewed the signals from the laboratory-grown cracks used in the mock-up to ensure that they provide reasonable simulations of those obtained in the field. The mock-up contains 400 tube openings. Each tube contains nine 22.2-mm (7/8-in.) diameter, 30.5-cm (1-ft) long, Alloy 600 test sections. The flaws are located in the tube sheet near the roll transition zone (RTZ), in the tube support plate (TSP), and in the free-span. The flaws are primarily intergranular stress corrosion cracks (axial and circumferential, ID and OD) though intergranular attack (IGA) wear and fatigue cracks are also present, as well as cracks in dents. In addition to the simulated tube sheet and TSP the mock-up has simulated sludge and magnetite deposits. A multiparameter eddy current algorithm, validated for mock-up flaws, provided a detailed isometric plot for every flaw and was used to establish the reference state of defects in the mock-up. The detection results for the 11 teams were used to develop POD curves as a function of maximum depth, voltage and the parameter m p, for the various types of

  6. Round-Robin Studies on Roll-Processed ITO-free Organic Tandem Solar Cells Combined with Inter-Laboratory Stability Studies

    DEFF Research Database (Denmark)

    Livi, Francesco; Søndergaard, Roar R.; Andersen, Thomas Rieks

    2015-01-01

    Roll-processed, indium tin oxide (ITO)-free, flexible, organic tandem solar cells and modules have been realized and used in round-robin studies as well as in parallel inter-laboratory stability studies. The tandem cells/modules show no significant difference in comparison to their single...

  7. SCK-CEN Contribution to the IAEA Round Robin Exercise on WWER-440 RPV Weld Metal Irradiation Embrittlement, annealing and Re-Embrittlement. Second Progress Report

    International Nuclear Information System (INIS)

    Van Walle, E.; Chaouadi, R.; Scibetta, M.; Lucon, E.; Weber, M.

    1999-07-01

    The report gives the actual status of the contribution of the Belgian Nuclear Research Centre SCK-CEN to the IAEA Round Robin Exercise on WWER-440 RPV Weld Material Irradiation, Annealing and Re-Embrittlement. Results from the reference testing of unirradiated material as well as the results of the CHIVAS-7 experiment are discussed

  8. Identification of alginite and bituminite in rocks other than coal. 2006, 2009 and 2011 round robin exercises of the ICCP Identification of Dispersed Organic Matter Working Group

    Czech Academy of Sciences Publication Activity Database

    Kus, J.; Araujo, C.V.; Borrego, A.G.; Flores, D.; Hackley, P.C.; Hámor-Vidó, M.; Kalaitzidis, S.; Kommeren, C.J.; Kwiecinska, B.; Mastalerz, M.; Mendonca Filho, J.G.; Menezes, T.R.; Misz-Kennan, M.; Nowak, G.J.; Petersen, H.I.; Rallakis, D.; Suárez-Ruiz, I.; Sýkorová, Ivana; Životič, D.

    2017-01-01

    Roč. 178, JUN 1 (2017), s. 26-38 ISSN 0166-5162 Institutional support: RVO:67985891 Keywords : ICCP * alginite * lamalginite * telalginite * maceral * round robin exercises * bituminite Subject RIV: DD - Geochemistry OBOR OECD: Geology Impact factor: 4.783, year: 2016

  9. PSI contribution to the CASTOC round robin on EAC of low-alloy RPV steels under BWR conditions

    Energy Technology Data Exchange (ETDEWEB)

    Seifert, H.P.; Ritter, S

    2001-08-01

    Within the CASTOC-project (5th EU FW programme), the environmentally-assisted crack growth (EAC) behaviour of low-alloy reactor pressure vessel (RPV) steels is experimentally investigated under simulated transient and steady-state BWR power operation conditions by 6 European laboratories. The present report contains a summary of the PSI contribution to the Working Package 1 (WP1) of this project. WP1 is an interlaboratory round robin EAC test in simulated BWR/NWC environment under cyclic and static loading conditions. The round robin shall demonstrate the applicability of the used advanced test technique and establishes the technical basis for the decision of test conditions in the other working packages. In the first part of the report, the PSI testing facility/measurement instruments and the applied test and evaluation procedure are discussed in detail. In the second part, the exact test conditions and test results with detailed post-test fractographical evaluation in the SEM are presented. The test results are compared with other PSI results, literature data and nuclear codes. Stable and stationary test conditions within the specified range could be achieved in the PSI test during the whole conditioning and experimental phase. The cyclic crack growth rate results agree well with recent PSI results at a higher dissolved oxygen content of 8 ppm and are slightly below the 'high-sulphur line' of the PLEDGE-model. The crack growth rates are significantly above the ASME XI 'wet' curve. Compared to fatigue crack growth rates in air under otherwise identical test conditions, the effect of the high-temperature water environment resulted in an acceleration of crack growth by a factor of 150-250 under these low-cyclic loading conditions. The test results at constant load confirm the extremely low susceptibility to SCC crack growth under static load at 288 {sup o}C observed in tests at MPA, PSI and in a European Round Robin. They agree well with the RPV

  10. PSI contribution to the CASTOC round robin on EAC of low-alloy RPV steels under BWR conditions

    International Nuclear Information System (INIS)

    Seifert, H.P.; Ritter, S.

    2001-08-01

    Within the CASTOC-project (5th EU FW programme), the environmentally-assisted crack growth (EAC) behaviour of low-alloy reactor pressure vessel (RPV) steels is experimentally investigated under simulated transient and steady-state BWR power operation conditions by 6 European laboratories. The present report contains a summary of the PSI contribution to the Working Package 1 (WP1) of this project. WP1 is an interlaboratory round robin EAC test in simulated BWR/NWC environment under cyclic and static loading conditions. The round robin shall demonstrate the applicability of the used advanced test technique and establishes the technical basis for the decision of test conditions in the other working packages. In the first part of the report, the PSI testing facility/measurement instruments and the applied test and evaluation procedure are discussed in detail. In the second part, the exact test conditions and test results with detailed post-test fractographical evaluation in the SEM are presented. The test results are compared with other PSI results, literature data and nuclear codes. Stable and stationary test conditions within the specified range could be achieved in the PSI test during the whole conditioning and experimental phase. The cyclic crack growth rate results agree well with recent PSI results at a higher dissolved oxygen content of 8 ppm and are slightly below the 'high-sulphur line' of the PLEDGE-model. The crack growth rates are significantly above the ASME XI 'wet' curve. Compared to fatigue crack growth rates in air under otherwise identical test conditions, the effect of the high-temperature water environment resulted in an acceleration of crack growth by a factor of 150-250 under these low-cyclic loading conditions. The test results at constant load confirm the extremely low susceptibility to SCC crack growth under static load at 288 o C observed in tests at MPA, PSI and in a European Round Robin. They agree well with the RPV operating experience

  11. IGSCC crack propagation rate measurement in BWR environments. Executive summary of a Round Robin study

    International Nuclear Information System (INIS)

    Andresen, Peter L.

    1998-01-01

    Five of the world's best laboratories at performing stress corrosion crack growth studies - ABB Atom AB, AEA Technology, GE Corporate Research and Development Center, Studsvik Material AB, and VTT Manufacturing Technology, were selected to participate in a round robin to evaluate the quality and reproducibility of testing conditions and resulting stress corrosion crack growth rates in sensitized type 304 stainless steel in 288 deg C water. Heat treated, machined and fatigue pre-cracked specimens were provided to all laboratories, and detailed test procedures prescribed the use of active loading, reversed dc potential drop crack monitoring, a common reference electrode supplied to all laboratories by GE CRD (to be used along side each laboratory's own reference electrode), and highly specified water chemistry conditions. The ability of each laboratory to achieve optimal testing conditions varied, although all laboratories achieved an impressive standard of testing control. The most significant laboratory-to-laboratory differences were associated with their ability to achieve high purity autoclave outlet water, reproduce accurate measurements of corrosion potential on the test specimen, and provide high resolution crack following using a reversed dc potential drop. However, the most notable outcome of the program is the consistent observation by all laboratories that initiating and sustaining stress corrosion crack growth at constant load in sensitized type 304 stainless steel is difficult, despite the use of a moderately high stress intensity, and high dissolved oxygen and corrosion potential conditions. Concerns for specimen machining and pre-cracking were identified, although these factors were not the sole cause of difficulty in initiating and sustaining stress corrosion cracking. It was shown that many phases of specimen preparation and testing can have a large influence on the measured SCC response. Even under the best test conditions it is critical to ensure

  12. IGSCC crack propagation rate measurement in BWR environments. Executive summary of a Round Robin study

    Energy Technology Data Exchange (ETDEWEB)

    Andresen, Peter L. [GE Corporate Research and Development, Schenectady, NY (United States)

    1998-12-31

    Five of the world`s best laboratories at performing stress corrosion crack growth studies - ABB Atom AB, AEA Technology, GE Corporate Research and Development Center, Studsvik Material AB, and VTT Manufacturing Technology, were selected to participate in a round robin to evaluate the quality and reproducibility of testing conditions and resulting stress corrosion crack growth rates in sensitized type 304 stainless steel in 288 deg C water. Heat treated, machined and fatigue pre-cracked specimens were provided to all laboratories, and detailed test procedures prescribed the use of active loading, reversed dc potential drop crack monitoring, a common reference electrode supplied to all laboratories by GE CRD (to be used along side each laboratory`s own reference electrode), and highly specified water chemistry conditions. The ability of each laboratory to achieve optimal testing conditions varied, although all laboratories achieved an impressive standard of testing control. The most significant laboratory-to-laboratory differences were associated with their ability to achieve high purity autoclave outlet water, reproduce accurate measurements of corrosion potential on the test specimen, and provide high resolution crack following using a reversed dc potential drop. However, the most notable outcome of the program is the consistent observation by all laboratories that initiating and sustaining stress corrosion crack growth at constant load in sensitized type 304 stainless steel is difficult, despite the use of a moderately high stress intensity, and high dissolved oxygen and corrosion potential conditions. Concerns for specimen machining and pre-cracking were identified, although these factors were not the sole cause of difficulty in initiating and sustaining stress corrosion cracking. It was shown that many phases of specimen preparation and testing can have a large influence on the measured SCC response. Even under the best test conditions it is critical to ensure

  13. A round-robin gamma stereotactic radiosurgery dosimetry interinstitution comparison of calibration protocols

    Energy Technology Data Exchange (ETDEWEB)

    Drzymala, R. E., E-mail: drzymala@wustl.edu [Department of Radiation Oncology, Washington University, St. Louis, Missouri 63110 (United States); Alvarez, P. E. [Imaging and Radiation Oncology Core Houston, UT MD Anderson Cancer Center, Houston, Texas 77030 (United States); Bednarz, G. [Radiation Oncology Department, University of Pittsburgh Medical Center, Pittsburgh, Pennsylvania 15232 (United States); Bourland, J. D. [Department of Radiation Oncology, Wake Forest University, Winston-Salem, North Carolina 27157 (United States); DeWerd, L. A. [Department of Medical Physics, University of Wisconsin-Madison, Madison, Wisconsin 53705 (United States); Ma, L. [Department of Radiation Oncology, University California San Francisco, San Francisco, California 94143 (United States); Meltsner, S. G. [Department of Radiation Oncology, Duke University Medical Center, Durham, North Carolina 27710 (United States); Neyman, G. [Department of Radiation Oncology, The Cleveland Clinic Foundation, Cleveland, Ohio 44195 (United States); Novotny, J. [Medical Physics Department, Hospital Na Homolce, Prague 15030 (Czech Republic); Petti, P. L. [Gamma Knife Center, Washington Hospital Healthcare System, Fremont, California 94538 (United States); Rivard, M. J. [Department of Radiation Oncology, Tufts University School of Medicine, Boston, Massachusetts 02111 (United States); Shiu, A. S. [Department of Radiation Oncology, University of Southern California, Los Angeles, California 90033 (United States); Goetsch, S. J. [San Diego Medical Physics, Inc., La Jolla, California 92037 (United States)

    2015-11-15

    Purpose: Absorbed dose calibration for gamma stereotactic radiosurgery is challenging due to the unique geometric conditions, dosimetry characteristics, and nonstandard field size of these devices. Members of the American Association of Physicists in Medicine (AAPM) Task Group 178 on Gamma Stereotactic Radiosurgery Dosimetry and Quality Assurance have participated in a round-robin exchange of calibrated measurement instrumentation and phantoms exploring two approved and two proposed calibration protocols or formalisms on ten gamma radiosurgery units. The objectives of this study were to benchmark and compare new formalisms to existing calibration methods, while maintaining traceability to U.S. primary dosimetry calibration laboratory standards. Methods: Nine institutions made measurements using ten gamma stereotactic radiosurgery units in three different 160 mm diameter spherical phantoms [acrylonitrile butadiene styrene (ABS) plastic, Solid Water, and liquid water] and in air using a positioning jig. Two calibrated miniature ionization chambers and one calibrated electrometer were circulated for all measurements. Reference dose-rates at the phantom center were determined using the well-established AAPM TG-21 or TG-51 dose calibration protocols and using two proposed dose calibration protocols/formalisms: an in-air protocol and a formalism proposed by the International Atomic Energy Agency (IAEA) working group for small and nonstandard radiation fields. Each institution’s results were normalized to the dose-rate determined at that institution using the TG-21 protocol in the ABS phantom. Results: Percentages of dose-rates within 1.5% of the reference dose-rate (TG-21 + ABS phantom) for the eight chamber-protocol-phantom combinations were the following: 88% for TG-21, 70% for TG-51, 93% for the new IAEA nonstandard-field formalism, and 65% for the new in-air protocol. Averages and standard deviations for dose-rates over all measurements relative to the TG-21 + ABS

  14. Highly Efficient Multi Channel Packet Forwarding with Round Robin Intermittent Periodic Transmit for Multihop Wireless Backhaul Networks

    Science.gov (United States)

    Furukawa, Hiroshi

    2017-01-01

    Round Robin based Intermittent Periodic Transmit (RR-IPT) has been proposed which achieves highly efficient multi-hop relays in multi-hop wireless backhaul networks (MWBN) where relay nodes are 2-dimensionally deployed. This paper newly investigates multi-channel packet scheduling and forwarding scheme for RR-IPT. Downlink traffic is forwarded by RR-IPT via one of the channels, while uplink traffic and part of downlink are accommodated in the other channel. By comparing IPT and carrier sense multiple access with collision avoidance (CSMA/CA) for uplink/downlink packet forwarding channel, IPT is more effective in reducing packet loss rate whereas CSMA/CA is better in terms of system throughput and packet delay improvement. PMID:29137164

  15. Enhanced first-in-first-out-based round-robin multicast scheduling algorithm for input-queued switches

    DEFF Research Database (Denmark)

    Yu, Hao; Ruepp, Sarah Renée; Berger, Michael Stübert

    2011-01-01

    This study focuses on the multicast scheduling for M × N input-queued switches. An enhanced first-in-first-out -based round-robin multicast scheduling algorithm is proposed with a function of searching deeper into queues to reduce the head-of-line (HOL) blocking problem and thereby the multicast...... out on the decision matrix to reduce the number of transmission for each cell. To reduce the HOL blocking problem, a complement matrix is constructed based on the traffic matrix and the decision matrix, and a process of searching deeper into the queues is carried out to find cells that can be sent...... to the idle outputs. Simulation results show that the proposed function of searching deeper into the queues can alleviate the HOL blocking and as a result reduce the multicast latency significantly. Under both balanced and unbalanced multicast traffic, the proposed algorithm is able to maintain a stable...

  16. Round robin tests of Tc and Ic on YBa/sub 2/Cu/sub 3/O/sub x/

    International Nuclear Information System (INIS)

    Kimura, Y.; Higuchi, N.; Meguro, S.; Takahashi, K.; Uyeda, K.; Ishihara, T.; Inukai, E.; Umeda, M.

    1989-01-01

    In the author's research and development of oxide superconducting material, methods for measuring the critical properties such as critical temperature and critical current were investigated and studied by way of round robin tests. The investigation was carried out through the steps of (1) decision on the specifications of common samples and measuring methods, (2) preparation and characterization of common samples, (3) distribution of samples to ten member research organs of Super-GM, (4) experimental measurement in the respective research organs, and (5) analysis of measurement results. The measurement of critical temperature and critical current were made mainly using the 4-probe method, and partially the magnetization method. The results were found to disperse, depending on the measurement methods and definitions of Tc and lc. Data analysis with these factors clarified is important

  17. Verification of the Robin and Graham classification system of hip disease in cerebral palsy using three-dimensional computed tomography.

    Science.gov (United States)

    Gose, Shinichi; Sakai, Takashi; Shibata, Toru; Akiyama, Keisuke; Yoshikawa, Hideki; Sugamoto, Kazuomi

    2011-12-01

    We evaluated the validity of the Robin and Graham classification system of hip disease in cerebral palsy (CP) using three-dimensional computed tomography in young people with CP. A total of 91 hips in 91 consecutive children with bilateral spastic CP (57 males, 34 females; nine classified at Gross Motor Function Classification System level II, 42 at level III, 32 at level IV, and eight at level V; mean age 5 y 2 mo, SD 11 mo; range 2-6 y) were investigated retrospectively using anteroposterior plain radiographs and three-dimensional computed tomography (3D-CT) of the hip. The migration percentage was calculated on plain radiographs and all participants were classified into four groups according to migration percentage: grade II, migration percentage ≥ 10% but ≤ 15%, (four hips), grade III, migration percentage >15% but ≤ 30%, (20 hips); grade IV, migration percentage >30% but <100%, (63 hips); and grade V, migration percentage ≥ 100%, (four hips). The lateral opening angle and the sagittal inclination angle of the acetabulum, the neck-shaft angle, and the femoral anteversion of the femur were measured on 3D-CT. The three-dimensional quantitative evaluation indicated that there were significant differences in the lateral opening angle and the neck-shaft angle between the four groups (Kruskal-Wallis test, p ≤ 0.001). This three-dimensional evaluation supports the validation of the Robin and Graham classification system for hip disease in 2- to 7-year-olds with CP. © The Authors. Developmental Medicine & Child Neurology © 2011 Mac Keith Press.

  18. Phytoremediated marine sediments as suitable peat-free growing media for production of red robin photinia (Photinia x fraseri).

    Science.gov (United States)

    Mattei, Paola; Gnesini, Alessandro; Gonnelli, Cristina; Marraccini, Chiara; Masciandaro, Grazia; Macci, Cristina; Doni, Serena; Iannelli, Renato; Lucchetti, Stefano; Nicese, Francesco P; Renella, Giancarlo

    2018-06-01

    Sediments dredged by an industrial port, slightly contaminated by heavy metals and petroleoum hydrocarbons, were phytoremediated and used as peat-free growing media for the red robin photinia (Photinia x fraseri L.). Plants were grown on sediment only (S), sediment mixed with composted pruning residues (S + PR), sediment fertilized with controlled release fertilizers (S + F) and peat-based growing media as control (C). Plant elongation and dry weight, leaf contents of chlorophyll, malondialdehyde (MDA), macronutrients and heavy metals were determined at the end of one growing season. Environmental impact related to the use of sediment-based as compared to peat-based growing media was assessed by the Life Cycle Analysis (LCA). Sediment-based growing media presented significantly higher bulk density, pH and electrical conductivity values, lower C and N contents, and significantly higher total and available P. Red robin photinia grown on S + F growing media showed morphological and chemical parameters similar to those of control plants (C), whereas plants grown on S and S + PR showed lower growth. Leaf concentration of nutrients and heavy metals varied depending on the considered element and growing media, but were all within the common values for ornamental plants, whereas the highest MDA concentrations were found in plants grown on traditional growing media. The LCA indicated the use of sediments as growing media reduced the C footprint of ornamental plant production and the contribute of growing media to the environmental impact per produced plant. We concluded that sediments phytoremediation and use in plant nursery is a practical alternative re-use option for dredged sediments. Copyright © 2018 Elsevier Ltd. All rights reserved.

  19. Sequence of a cloned cDNA encoding human ribosomal protein S11

    Energy Technology Data Exchange (ETDEWEB)

    Lott, J B; Mackie, G A

    1988-02-11

    The authors have isolated a cloned cDNA that encodes human ribosomal protein (rp) S11 by screening a human fibroblast cDNA library with a labelled 204 bp DNA fragment encompassing residues 212-416 of pRS11, a rat rp Sll cDNA clone. The human rp S11 cloned cDNA consists of 15 residues of the 5' leader, the entire coding sequence and all 51 residues of the 3' untranslated region. The predicted amino acid sequence of 158 residues is identical to rat rpS11. The nucleotide sequence in the coding region differs, however, from that in rat in the first position in two codons and in the third position in 44 codons.

  20. Sequence assembly

    DEFF Research Database (Denmark)

    Scheibye-Alsing, Karsten; Hoffmann, S.; Frankel, Annett Maria

    2009-01-01

    Despite the rapidly increasing number of sequenced and re-sequenced genomes, many issues regarding the computational assembly of large-scale sequencing data have remain unresolved. Computational assembly is crucial in large genome projects as well for the evolving high-throughput technologies and...... in genomic DNA, highly expressed genes and alternative transcripts in EST sequences. We summarize existing comparisons of different assemblers and provide a detailed descriptions and directions for download of assembly programs at: http://genome.ku.dk/resources/assembly/methods.html....

  1. Genome Sequencing

    DEFF Research Database (Denmark)

    Sato, Shusei; Andersen, Stig Uggerhøj

    2014-01-01

    The current Lotus japonicus reference genome sequence is based on a hybrid assembly of Sanger TAC/BAC, Sanger shotgun and Illumina shotgun sequencing data generated from the Miyakojima-MG20 accession. It covers nearly all expressed L. japonicus genes and has been annotated mainly based on transcr......The current Lotus japonicus reference genome sequence is based on a hybrid assembly of Sanger TAC/BAC, Sanger shotgun and Illumina shotgun sequencing data generated from the Miyakojima-MG20 accession. It covers nearly all expressed L. japonicus genes and has been annotated mainly based...

  2. Espécies do gênero Munida Leach (Crustacea, Decapoda, Galatheidae coletadas entre Torres (Rio Grande do Sul, Brasil e Maldonado (Uruguai pelo Programa Rio Grande do Sul (PRS I-II, GEDIP Species of the genus Munida Leach (Crustacea, Decapoda, Galatheidae collected between Torres (Rio Grande do Sul, Brazil and Maldonado (Uruguay, by the Project Rio Grande do Sul (PRS I-II, GEDIP

    Directory of Open Access Journals (Sweden)

    Gustavo A.S. de Melo-Filho

    2001-12-01

    Full Text Available The project PRS-GEDIP was carried out in the Rio Grande do Sul coast, with some few stations off Maldonado (Uruguay, by means of a convention between Instituto Oceanográfico USP (IOUSP and the Grupo Executivo do Desenvolvimento da Indústria da Pesca (GEDIP of Rio Grande do Sul. The purpose of this project was the acquisition of data in order to have a better biotic and abiotic characterization of the southern Brazilian coast. Among the Galatheidae, about 1200 specimens of the genus Munida Leach, 1820 were collected, including five species as follows: Munida flinti Benedict, 1902; M. forceps A. Milne Edwards, 1880; M. iris A. Milne Edwards, 1880; M. irrasa A. Milne Edwards. 1880 and M. longipes A. Milne Edwards, 1880. The description, material examined, remarks and maps of the stations where each species was collected are done.

  3. SCK-CEN Contribution to the IAEA Round Robin Exercise on WWER-440 RPV Weld Material Irradiation, Annealing and Re-Embrittlement

    International Nuclear Information System (INIS)

    Van Walle, E.; Chaouadi, R.; Puzzolante, J.L.; Fabry, A.; Van de Velde, J.

    1998-01-01

    The contribution of the Belgian Nuclear Research Centre SCK-CEN to the IAEA Round Robin Exercise on WWER-440 RPV weld material is reported. The objective of this contribution is twofold: (1) to gain experience in the field of the testing of WWER-440 steels; (2) to analyse the round-robin data according to in-house developed on used models in order to check their validity and applicability. Results from testing on unirradiated material are reported including data obtained from chemical analysis, Charpy-V impact testing, tensile testing and fracture toughness determination. Finally, irradiation strategies that can be used in the program to obtain irradiated, irradiated-annealed and irradiated-annealed-reirradiated conditions are outlined

  4. Comparison of experimental techniques for measuring fracture toughness of austenitic stainless steels by performance of a comparative round-robin test

    International Nuclear Information System (INIS)

    Huthmann, H.; Akhurst, K.N.; Bethmont, M.; Picker, C.; Rongen, H.J.M. van; Soulat, P.

    1987-01-01

    The CEC fast breeder coordinating committee, activities group 3 Materials of the working group for codes and standards, has recently examined existing data on the fracture toughness of austenitic stainless steels. As a result, the committee decided to sponsor a round robin test programme aimed at comparing experimental techniques and assisting in establishing a standard test method for these steels. The contract for this programme was placed with Interatom, who have subcontracted with CEA-Saclay, CEGB-Leatherhead, TNO-Apeldoorn and UKAEA-Risley. Additionally CISE/ENEL-Milano and EdF-Les Renardieres took part in the round robin. This final report presents a common evaluation and discussion of the results gained by the different laboratories

  5. ROBIN: a platform for evaluating automatic target recognition algorithms: I. Overview of the project and presentation of the SAGEM DS competition

    Science.gov (United States)

    Duclos, D.; Lonnoy, J.; Guillerm, Q.; Jurie, F.; Herbin, S.; D'Angelo, E.

    2008-04-01

    The last five years have seen a renewal of Automatic Target Recognition applications, mainly because of the latest advances in machine learning techniques. In this context, large collections of image datasets are essential for training algorithms as well as for their evaluation. Indeed, the recent proliferation of recognition algorithms, generally applied to slightly different problems, make their comparisons through clean evaluation campaigns necessary. The ROBIN project tries to fulfil these two needs by putting unclassified datasets, ground truths, competitions and metrics for the evaluation of ATR algorithms at the disposition of the scientific community. The scope of this project includes single and multi-class generic target detection and generic target recognition, in military and security contexts. From our knowledge, it is the first time that a database of this importance (several hundred thousands of visible and infrared hand annotated images) has been publicly released. Funded by the French Ministry of Defence (DGA) and by the French Ministry of Research, ROBIN is one of the ten Techno-vision projects. Techno-vision is a large and ambitious government initiative for building evaluation means for computer vision technologies, for various application contexts. ROBIN's consortium includes major companies and research centres involved in Computer Vision R&D in the field of defence: Bertin Technologies, CNES, ECA, DGA, EADS, INRIA, ONERA, MBDA, SAGEM, THALES. This paper, which first gives an overview of the whole project, is focused on one of ROBIN's key competitions, the SAGEM Defence Security database. This dataset contains more than eight hundred ground and aerial infrared images of six different vehicles in cluttered scenes including distracters. Two different sets of data are available for each target. The first set includes different views of each vehicle at close range in a "simple" background, and can be used to train algorithms. The second set

  6. Plasma cholinesterase inhibition in the clay-colored robin (Turdus grayi) exposed to diazinon in maradol papaya crops in Yucatan, Mexico

    Science.gov (United States)

    Cobos, V.M.; Mora, M.A.; Escalona, G.

    2006-01-01

    The use of organophosphorous pesticides in agriculture can result in intoxication of birds foraging in sprayed crops. Effects on birds resulting from pesticide intoxication are varied and include behavioral and reproductive effects, including death. One widely used insecticide in Maradol papaya crops is diazinon which has been associated with various incidents of intoxication and death of wild birds. The objective of this study was to evaluate the impact of diazinon application to papaya crops on plasma cholinesterase activity of the clay-colored robin (Turdus grayi). We captured clay-colored robins foraging in a papaya crop the following day after the field had been sprayed with diazinon at a dose of 1.5 kg/ha during March and May, respectively. We took a blood sample from the brachialis vein of the birds captured and measured plasma enzymatic activity. The plasma samples from birds used as controls were taken during the same time period and were analyzed in a similar way. Enzymatic activity of males was greater than that of females (53,52%) and mean cholinesterase inhibition was 49.43%. Cholinesterase inhibition was greater during May than in March probably due to more continuous exposure and ingestion of the insecticide through food and possible absorption through the skin. This degree of enzymatic inhibition is possibly affecting the behavior of the clay-colored robin and could result in death in severe cases.

  7. Superradiant instabilities in the Kerr-mirror and Kerr-AdS black holes with Robin boundary conditions

    Science.gov (United States)

    Ferreira, Hugo R. C.; Herdeiro, Carlos A. R.

    2018-04-01

    It has been recently observed that a scalar field with Robin boundary conditions (RBCs) can trigger both a superradiant and a bulk instability for a Bañados-Teitelboim-Zanelli (BTZ) black hole (BH) [1]. To understand the generality and scrutinize the origin of this behavior, we consider here the superradiant instability of a Kerr BH confined either in a mirrorlike cavity or in anti-de Sitter (AdS) space, triggered also by a scalar field with RBCs. These boundary conditions are the most general ones that ensure the cavity/AdS space is an isolated system and include, as a particular case, the commonly considered Dirichlet boundary conditions (DBCs). Whereas the superradiant modes for some RBCs differ only mildly from the ones with DBCs, in both cases, we find that as we vary the RBCs the imaginary part of the frequency may attain arbitrarily large positive values. We interpret this growth as being sourced by a bulk instability of both confined geometries when certain RBCs are imposed to either the mirrorlike cavity or the AdS boundary, rather than by energy extraction from the BH, in analogy with the BTZ behavior.

  8. Robin Hood Gardens: una interpretación desde el pensamiento topográfico de los Limites Romani

    Directory of Open Access Journals (Sweden)

    David Casino

    2014-02-01

    Full Text Available El estrecho vínculo con el territorio que poseían los Limites Romani demostraba, según Alison Smithson, un profundo “pensamiento topográfico”: un compromiso con el lugar basado en un posicionamiento estratégico en el paisaje, una constante adaptación a las condiciones cambiantes del terreno y un intenso modelado de la superficie del suelo. Aspectos fundamentales de estas fortificaciones fronterizas romanas cuya esencia podemos identificar en algunos proyectos clave de Alison y Peter Smithson. Proyectos enraizados que centraban su atención en el plano del suelo, en articular el contacto de los edificios con el terreno y en configurar sus espacios exteriores. Entre estos, los Robin Hood Gardens mostraban de un modo elocuente la fascinación que sentían los Smithson por la condición topográfica de aquellas obras de ingeniería romana. Un interés que les llevaría a explorar conceptos como “límite” y “protección”, así como a recuperar el conjunto de alteraciones topográficas defensivas convirtiéndolas —despojadas de su naturaleza militar— en operaciones clave para radicar en el lugar (del latín radicare: echar raíces, enraizar: una sofisticada apropiación que gravitó “de la defensa al enraizamiento”

  9. IAEA co-ordinated research program. 'Round Robin' on measuring the velocity of delayed hydride cracking (DHC)

    International Nuclear Information System (INIS)

    Grigoriev, V.; Jakobsson, R.

    1999-09-01

    The International Atomic Agency (IAEA) has initiated a new Co-ordinated Research Programme (CRP) on Hydrogen and hydride induced degradation of the mechanical and physical properties of Zirconium-based alloys. In the first phase of this CRP the methodology for measuring the velocity of Delayed Hydride Cracking (DHC) should be established and participating laboratories from about nine countries around the world carry out identical tests in 'round robin'. The objective of the present work is to establish at Studsvik laboratory the method of a constant load cracking test on unirradiated Zr-2.5Nb and attain a comparison of results between laboratories. Constant load tests are performed on specimens cut from unirradiated CANDU Zr-2.5Nb pressure tube and the rate of crack propagation is determined in each test. Pre-hydrided specimens for testing are supplied from the host laboratory. Six specimens have been tested for delayed hydride cracking (DHC) at 250 deg C. The axial crack growth velocities measured in the tests are within the interval of 8.62x10 -8 - 1.06x10 -7 m/s. The results obtained agree well with the earlier published data for similar materials and test conditions

  10. The regeneration of a multi-ethnic mixed-use area: The case of Robin Hood Chase

    Directory of Open Access Journals (Sweden)

    Ian Bentley

    1997-01-01

    Full Text Available Urban designers show increasing interest in promoting community participation in urban regeneration and especially housing regeneration. However, effective participation has proved difficult in multi-ethnic mixed-use areas, with their wide range of different (and often conflicting interest groups. This paper, presented in case-study form, analyses a project in one such area: the Robin Hood Chase local centre in St. Ann’s area of Nottingham. It pays particular attention to the identification of different interest groups and their associated institutions, the use of local media and social events to involve these groups in the urban design process, the use of rearrangeable models in a process of “enquiry by design”, and the production of a widely acceptable urban design strategy for the area. Analysis of feedback from participants indicates a high level of satisfaction both with the final physical design proposal and with the process itself; and also identifies directions for further development in the approach and techniques employed.

  11. Transport Properties of Bulk Thermoelectrics—An International Round-Robin Study, Part I: Seebeck Coefficient and Electrical Resistivity

    Science.gov (United States)

    Wang, Hsin; Porter, Wallace D.; Böttner, Harald; König, Jan; Chen, Lidong; Bai, Shengqiang; Tritt, Terry M.; Mayolet, Alex; Senawiratne, Jayantha; Smith, Charlene; Harris, Fred; Gilbert, Patricia; Sharp, Jeff W.; Lo, Jason; Kleinke, Holger; Kiss, Laszlo

    2013-04-01

    Recent research and development of high-temperature thermoelectric materials has demonstrated great potential for converting automobile exhaust heat directly into electricity. Thermoelectrics based on classic bismuth telluride have also started to impact the automotive industry by enhancing air-conditioning efficiency and integrated cabin climate control. In addition to engineering challenges of making reliable and efficient devices to withstand thermal and mechanical cycling, the remaining issues in thermoelectric power generation and refrigeration are mostly materials related. The dimensionless figure of merit, ZT, still needs to be improved from the current value of 1.0 to 1.5 to above 2.0 to be competitive with other alternative technologies. In the meantime, the thermoelectric community could greatly benefit from the development of international test standards, improved test methods, and better characterization tools. Internationally, thermoelectrics have been recognized by many countries as a key component for improving energy efficiency. The International Energy Agency (IEA) group under the Implementing Agreement for Advanced Materials for Transportation (AMT) identified thermoelectric materials as an important area in 2009. This paper is part I of the international round-robin testing of transport properties of bulk thermoelectrics. The main foci in part I are the measurement of two electronic transport properties: Seebeck coefficient and electrical resistivity.

  12. Variation at innate immunity Toll-like receptor genes in a bottlenecked population of a New Zealand robin.

    Directory of Open Access Journals (Sweden)

    Catherine E Grueber

    Full Text Available Toll-like receptors (TLRs are an ancient family of genes encoding transmembrane proteins that bind pathogen-specific molecules and initiate both innate and adaptive aspects of the immune response. Our goal was to determine whether these genes show sufficient genetic diversity in a bottlenecked population to be a useful addition or alternative to the more commonly employed major histocompatibility complex (MHC genotyping in a conservation genetics context. We amplified all known avian TLR genes in a severely bottlenecked population of New Zealand's Stewart Island robin (Petroica australis rakiura, for which reduced microsatellite diversity was previously observed. We genotyped 17-24 birds from a reintroduced island population (including the 12 founders for nine genes, seven of which were polymorphic. We observed a total of 24 single-nucleotide polymorphisms overall, 15 of which were non-synonymous, representing up to five amino-acid variants at a locus. One locus (TLR1LB showed evidence of past directional selection. Results also confirmed a passerine duplication of TLR7. The levels of TLR diversity that we observe are sufficient to justify their further use in addressing conservation genetic questions, even in bottlenecked populations.

  13. Round robin test on quantification of amyloid-β 1-42 in cerebrospinal fluid by mass spectrometry.

    Science.gov (United States)

    Pannee, Josef; Gobom, Johan; Shaw, Leslie M; Korecka, Magdalena; Chambers, Erin E; Lame, Mary; Jenkins, Rand; Mylott, William; Carrillo, Maria C; Zegers, Ingrid; Zetterberg, Henrik; Blennow, Kaj; Portelius, Erik

    2016-01-01

    Cerebrospinal fluid (CSF) amyloid-β 1-42 (Aβ42) is an important biomarker for Alzheimer's disease, both in diagnostics and to monitor disease-modifying therapies. However, there is a great need for standardization of methods used for quantification. To overcome problems associated with immunoassays, liquid chromatography-tandem mass spectrometry (LC-MS/MS) has emerged as a critical orthogonal alternative. We compared results for CSF Aβ42 quantification in a round robin study performed in four laboratories using similar sample preparation methods and LC-MS instrumentation. The LC-MS results showed excellent correlation between laboratories (r(2) >0.98), high analytical precision, and good correlation with enzyme-linked immunosorbent assay (r(2) >0.85). The use of a common reference sample further decreased interlaboratory variation. Our results indicate that LC-MS is suitable for absolute quantification of Aβ42 in CSF and highlight the importance of developing a certified reference material. Copyright © 2016 The Alzheimer's Association. Published by Elsevier Inc. All rights reserved.

  14. Temporal flow instability for Magnus-Robins effect at high rotation rates

    Science.gov (United States)

    Sengupta, T. K.; Kasliwal, A.; de, S.; Nair, M.

    2003-06-01

    The lift and drag coefficients of a circular cylinder, translating and spinning at a supercritical rate is studied theoretically to explain the experimentally observed violation of maximum mean lift coefficient principle, that was proposed heuristically by Prandtl on the basis of inviscid flow model. It is also noted experimentally that flow past a rotating and translating cylinder experiences temporal instability-a fact not corroborated by any theoretical studies so far. In the present paper we report very accurate solution of Navier-Stokes equation that displays the above-mentioned instability and the violation of the maximum limit. The calculated lift coefficient exceeds the limit of /4π, instantaneously as well as in time-averaged sense. The main purpose of the present paper is to explain the observed temporal instability sequence in terms of a new theory of instability based on full Navier-Stokes equation that does not require making any assumption about the flow field, unlike other stability theories.

  15. Complete genome sequence of Leptotrichia buccalis type strain (C-1013-bT)

    Energy Technology Data Exchange (ETDEWEB)

    Ivanova, Natalia; Gronow, Sabine; Lapidus, Alla; Copeland, Alex; Glavina Del Rio, Tijana; Nolan, Matt; Lucas, Susan; Chen, Feng; Tice, Hope; Cheng, Jan-Fang; Saunders, Liz; Bruce, David; Goodwin, Lynne; Brettin, Thomas; Detter, John C.; Han, Cliff; Pitluck, Sam; Mikhailova, Natalia; Pati, Amrita; Mavromatis, Konstantinos; Chen, Amy; Palaniappan, Krishna; Land, Miriam; Hauser, Loren; Chang, Yun-Juan; Jefferies, Cynthia C.; Chain, Patrick; Rohde, Christine; Goker, Markus; Bristow, Jim; Eisen, Jonathan A.; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos C.; Klenk, Hans-Peter

    2009-05-20

    Leptotrichia buccalis (Robin 1853) Trevisan 1879 is the type species of the genus, and is of phylogenetic interest because of its isolated location in the sparsely populated and neither taxonomically nor genomically adequately accessed family 'Leptotrichiaceae' within the phylum 'Fusobacteria'. Species of Leptotrichia are large fusiform non-motile, non-sporulating rods, which often populate the human oral flora. L. buccalis is anaerobic to aerotolerant, and saccharolytic. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first complete genome sequence of the order 'Fusobacteriales' and no more than the second sequence from the phylum 'Fusobacteria'. The 2,465,610 bp long single replicon genome with its 2306 protein-coding and 61 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

  16. Multiple lines of evidence risk assessment of American robins exposed to polychlorinated dibenzofurans (PCDFS) and polychlorinated dibenzo-P-dioxins (PCDDS) in the Tittabawassee River floodplain, Midland, Michigan, USA.

    Science.gov (United States)

    Tazelaar, Dustin L; Fredricks, Timothy B; Seston, Rita M; Coefield, Sarah J; Bradley, Patrick W; Roark, Shaun A; Kay, Denise P; Newsted, John L; Giesy, John P; Bursian, Steven J; Zwiernik, Matthew J

    2013-06-01

    Concentrations of polychlorinated dibenzofurans (PCDFs) and polychlorinated dibenzo-p-dioxins (PCDDs) in Tittabawassee River floodplain soils and biota downstream of Midland, Michigan, USA, are greater than regional background concentrations. From 2005 to 2008, a multiple lines of evidence approach was utilized to evaluate the potential for effects of PCDD/DFs on American robins (Turdus migratorius) breeding in the floodplains. A dietary-based assessment indicated there was potential for adverse effects for American robins predicted to have the greatest exposures. Conversely, a tissue-based risk assessment based on site-specific PCDD/DF concentrations in American robin eggs indicated minimal potential for adverse effects. An assessment based on reproductive endpoints indicated that measures of hatch success in study areas were significantly less than those of reference areas. However, there was no dose-response relationship between that endpoint and concentrations of PCDD/DF. Although dietary-based exposure and reproductive endpoint assessments predicted potential for adverse effects to resident American robins, the tissue-based assessment indicates minimal to no potential for adverse effects, which is reinforced by the fact the response was not dose related. It is likely that the dietary assessment is overly conservative given the inherent uncertainties of estimating dietary exposure relative to direct tissue-based assessment measures. Based on the available data, it can be concluded that exposure to PCDD/DFs in the Tittabawassee River floodplain would not likely result in adverse population-level effects to American robins. Copyright © 2013 SETAC.

  17. To be so bold: boldness is repeatable and related to within individual behavioural variability in North Island robins.

    Science.gov (United States)

    He, Ruchuan; Pagani-Núñez, Emilio; Chevallier, Clément; Barnett, Craig R A

    2017-07-01

    Behavioural research traditionally focusses on the mean responses of a group of individuals rather than variation in behaviour around the mean or among individuals. However, examining the variation in behaviour among and within individuals may also yield important insights into the evolution and maintenance of behaviour. Repeatability is the most commonly used measure of variability among individuals in behavioural research. However, there are other forms of variation within populations that have received less attention. One such measure is intraindividual variation in behaviour (IIV), which is a short-term fluctuation of within-individual behaviour. Such variation in behaviour might be important during interactions because it could decrease the ability of conspecific and heterospecific individuals to predict the behaviour of the subject, thus increasing the cost of the interaction. In this experiment, we made repeated measures of the latency of North Island robins to attack a prey in a novel situation (a form of boldness) and examined (i) repeatability of boldness (the propensity to take a risk), (ii) IIV of boldness, and (iii) whether there was a significant relationship between these two traits (a behavioural syndrome). We found that boldness was highly repeatable, that there were high levels of IIV in boldness, and that there was a negative relationship between boldness and IIV in boldness. This suggests that despite high levels of repeatability for this behaviour, there were also still significant differences in IIV among different individuals within the population. Moreover, bolder individuals had significantly less IIV in their boldness, which suggests that they were forming routines (which reduces behavioural variability) compared to shyer individuals. Our results definitively demonstrate that IIV itself varies across individuals and is linked with key behavioural traits, and we argue for the importance of future studies aimed at understanding its causes

  18. Socioeconomic inequalities in informal payments for health care: An assessment of the 'Robin Hood' hypothesis in 33 African countries.

    Science.gov (United States)

    Kankeu, Hyacinthe Tchewonpi; Ventelou, Bruno

    2016-02-01

    In almost all African countries, informal payments are frequently made when accessing health care. Some literature suggests that the informal payment system could lead to quasi-redistribution among patients, with physicians playing a 'Robin Hood' role, subsidizing the poor at the expense of the rich. We empirically tested this assumption with data from the rounds 3 and 5 of the Afrobarometer surveys conducted in 18 and 33 African countries respectively, from 2005 to 2006 for round 3 and from 2011 to 2013 for round 5. In these surveys, nationally representative samples of people aged 18 years or more were randomly selected in each country, with sizes varying between 1048 and 2400 for round 3 and between 1190 and 2407 for round 5. We used the 'normalized' concentration index, the poor/rich gap and the odds ratio to assess the level of inequality in the payment of bribes to access care at the local public health facility and implemented two decomposition techniques to identify the contributors to the observed inequalities. We obtained that: i) the socioeconomic gradient in informal payments is in favor of the rich in almost all countries, indicating a rather regressive system; ii) this is mainly due to the socioeconomic disadvantage itself, to poor/rich differences in supply side factors like lack of medicines, absence of doctors and long waiting times, as well as regional disparities. Although essentially empirical, the paper highlights the need for African health systems to undergo substantial country-specific reforms in order to better protect the worse-off from financial risk when they seek care. Copyright © 2016 Elsevier Ltd. All rights reserved.

  19. Oberbeck–Boussinesq free convection of water based nanoliquids in a vertical channel using Dirichlet, Neumann and Robin boundary conditions on temperature

    Directory of Open Access Journals (Sweden)

    Nur Asiah Mohd Makhatar

    2016-09-01

    Full Text Available A numerical investigation is carried out into the flow and heat transfer within a fully-developed mixed convection flow of water–alumina (Al2O3–water, water–titania (TiO2–water and water–copperoxide (CuO–water in a vertical channel by considering Dirichlet, Neumann and Robin boundary conditions. Actual values of thermophysical quantities are used in arriving at conclusions on the three nanoliquids. The Biot number influences on velocity and temperature distributions are opposite in regions close to the left wall and the right wall. Robin condition is seen to favour symmetry in the flow velocity whereas Dirichlet and Neumann conditions skew the flow distribution and push the point of maximum velocity to the right of the channel. A reversal of role is seen between them in their influence on the flow in the left-half and the right-half of the channel. This leads to related consequences in heat transport. Viscous dissipation is shown to aid flow and heat transport. The present findings reiterate the observation on heat transfer in other configurations that only low concentrations of nanoparticles facilitate enhanced heat transport for all three temperature conditions. Significant change was observed in Neumann condition, whereas the changes are too extreme in Dirichlet condition. It is found that Robin condition is the most stable condition. Further, it is also found that all three nanoliquids have enhanced heat transport compared to that by base liquid, with CuO–water nanoliquid shows higher enhancement in its Nusselt number, compared to Al2O3 and TiO2.

  20. Embodiment and Entangled Subjectivity: A Study of Robin Cook's Coma, Priscille Sibley's The Promise of Stardust and Alexander Beliaev's Professor Dowell's Head.

    Science.gov (United States)

    Karmakar, Manali; Parui, Avishek

    2018-03-22

    The essay examines Robin Cook's (1977) Coma and Priscille Sibley's (2013) The Promise of Stardust that dramatize the reified and disposable status of the brain-dead patients who are classified as nonpersons. The essay argues that the man-machine entanglement as depicted in the novels constructs a deterritorialized and entangled form of subjectivity that intervenes in the dominant biomedical understanding of personhood and agency that we notionally associate with a conscious mind. The essay concludes its arguments by discussing Alexander Beliaev's (1925) Professor Dowell's Head which depicts human subjectivity as an essentially embodied and distributive phenomenon and interrogates the Cartesian mind body dualism embedded in the dominant biomedical narratives.

  1. Suffrage Movement and the Subversion of the ‘Juridico-Discursive’ Power in the Victorian Period: Elizabeth Robins and The Concept of 'New Women'

    Directory of Open Access Journals (Sweden)

    Esmaeil Najar

    2016-01-01

    Full Text Available This paper examines the socio-historical subversion of ‘juridico-discursive’ power in the late Victorian period. It briefly investigates the rise of the British suffrage movement and highlights the role of ‘suffrage drama’ as its social apparatus. The authors demonstrate how suffrage artists, especially the playwright/actress Elizabeth Robins, acted against the dominant patriarchal hegemony and were in frontline of social uprisings. It is argued that ‘Suffrage drama’ as a ‘place of tolerance’ functioned as an antithesis to the mainstream theatre and challenged the conventional dramatic forms practiced prior to its birth. Suffrage drama provided a space for women to have their collective voice heard in a social and political context in the early Victorian era. Elizabeth Robins, mostly acknowledged for enacting women heroines of Ibsen’s plays, became an invaluable inspirational figure for suffrage women as she was the actress in whom the strong concept of the ‘New Woman’ was incarnated.

  2. NCLB: Achievement Robin Hood?

    Science.gov (United States)

    Bracey, Gerald W.

    2008-01-01

    In his "Wall Street Journal" op-ed on the 25th of anniversary of "A Nation At Risk", former assistant secretary of education Chester E. Finn Jr. applauded the report for turning U.S. education away from equality and toward achievement. It was not surprising, then, that in mid-2008, Finn arranged a conference to examine the…

  3. Robin Hood in reverse?

    DEFF Research Database (Denmark)

    Jensen, Cathrine Ulla; Panduro, Toke Emil; Lundhede, Thomas

    of nature. Preference parameters are identified locally through restrictions on household utility-functions. First, we assess the relation between demographic factors and household WTP for nature. Households with higher incomes and wealth have a 0.9% higher WTP per 1.000 EUR and this figure is slightly...

  4. ESA's Ice Sheets CCI: validation and inter-comparison of surface elevation changes derived from laser and radar altimetry over Jakobshavn Isbræ, Greenland – Round Robin results

    DEFF Research Database (Denmark)

    Fredenslund Levinsen, Joanna; Khvorostovsky, K.; Ticconi, F.

    2013-01-01

    method for determining each parameter. This work describes the SEC Round Robin and the subsequent conclusions leading to the creation of a method for determining GrIS SEC values. The participants used either Envisat radar or ICESat laser altimetry over Jakobshavn Isbræ drainage basin, and the submissions...

  5. A round robin test of the uncertainty on the measurementof the thermoelectric dimensionless figure of merit of Co.sub.0.97./sub.Ni.sub.0.03./sub.Sb.sub.3./sub..

    Czech Academy of Sciences Publication Activity Database

    Alleno, E.; Bérardan, D.; Byl, C.; Candolfi, C.; Daou, R.; Decourt, R.; Guilmeau, E.; Hébert, S.; Hejtmánek, Jiří; Lenoir, B.; Masschelein, P.; Ohorodnichuk, V.; Pollet, M.; Populoh, S.; Ravot, D.; Rouleau, O.; Soulier, M.

    2015-01-01

    Roč. 86, č. 1 (2015), "011301-1"-"011301-8" ISSN 0034-6748 Institutional support: RVO:68378271 Keywords : thermoelectricity * thermoelectric metrology * round robin test Subject RIV: BM - Solid Matter Physics ; Magnetism Impact factor: 1.336, year: 2015

  6. Progress report on a NDT round robin on austenitic circumferential pipe welds; Fortschrittsbericht ueber einen ZfP-Ringversuch an austenitischen Rohrleitungs-Rundschweissnaehten

    Energy Technology Data Exchange (ETDEWEB)

    Brast, G [Preussische Elektrizitaets-AG (Preussenelektra), Hannover (Germany); Maier, H J; Knoch, P; Mletzko, U [Stuttgart Univ. (Germany). Staatliche Materialpruefungsanstalt

    1998-11-01

    The objective of the project is establish on the basis of Round Robin tests the current state of efficiency of various, defined testing methods, so that required or achievable optimizations can be defined and made. The project work up to date encompasses mon-destructive examinations of 15 austenitic welds with nominal widths DN 150/200/250 and wall thicknesses from 8 to 18 mm. Except for one test piece, (elbow/elbow), the joining welds are straight pipe to elbow welds. The results of the Round Robin tests show that the NDE detection limits for the fault examined (intercrystalline stress corrosion cracking) are in the range assumed so far, i.e. from about 20 to 25% of the wall thickness to be examined. The defect detection rates of the ultrasonic test methods applied are approx. 70% and thus are about equal in achievement with comparable international Round Robin tests (PISC; ASME/PDI, ENIQ, etc.). Clearly better are the fault detection rates of radiography. Evaluation of the individual results indicates the detection limits can be improved, by 1. reducing the misalignment of edges, 2. grinding of welds, 3. avoiding sharp notches at the root, 4. producing coaxial surfaces. (orig./CB) [Deutsch] Ein Ziel des Vorhabens ist es, mit Ringversuchen den derzeitigen Stand der Leistungsfaehigkeit einzelner Pruefverfahren und -techniken zu erkennen, um moeglicherweise notwendige Optimierungen vornehmen zu koennen. Das Vorhaben umfasst bis jetzt zerstoerungsfreie Pruefungen an 15 austenitischen Naehten mit Nennweiten DN 150/200/250 und Wandstaerken zwischen 8 und 18 mm. Mit einer Ausnahme (Bogen/Bogen) handelt es sich um Verbindungen Geradrohr/Bogen. Die Ergebnisse des Ringversuches weisen darauf hin, dass die Nachweisgrenzen der ZfP fuer den vorliegenden Fehlertyp (Interkristalline Spannungsrisskorrosion) in der bisher schon angenommenen Groessenordnung von ca. 20-25% der geprueften Wanddicke liegen. Die Fehlerauffind-Raten der US-Pruefung liegen mit ca. 70% im Rahmen

  7. Procedure and results of a systematic comparative round robin estimation of the uncertainties of emission measurements in Germany and Switzerland during the summer and fall 1998

    Energy Technology Data Exchange (ETDEWEB)

    Morkowski, J.S.

    2000-08-01

    During summer and fall 1998, 75 sample takers and 20 employees of laboratories of 26 institutes measuring emissions in Germany and Switzerland estimated the uncertainty of measuring results of 5 selected DVI-standard emission measuring methods. The applied method of systematic comparative estimation showed that the estimated total uncertainties U{sub T} of the investigated measuring methods range between 12% and 21%. The results of the round robin estimation for one of the methods (dust measuring 2066 Part 7) with U{sub T}=15.4% are equal to those of the system for simulation of emissions (HLfU Kassel) with 15.5%. This confirms the expectation of the initiators of the project that the systematic comparative estimation is useful for the characterization of test methods and hence for the validation of methods. (orig.)

  8. Mental Health-Related Outcomes of Robin Williams' Death: The Role of Parasocial Relations and Media Exposure in Stigma, Help-Seeking, and Outreach.

    Science.gov (United States)

    Hoffner, Cynthia A; Cohen, Elizabeth L

    2017-10-19

    This study explores responses to the death of actor/comedian Robin Williams, focusing on the role of celebrity attachment and exposure to media coverage following his suicide. A total of 350 respondents recruited on Mechanical Turk completed an online survey. Participants who had a stronger parasocial relationship with Williams reported lower social distance from people with depression, greater willingness to seek treatment for depression, and more frequent outreach to other people with depression or suicidal thoughts following his death. Exposure to media coverage of suicide/depression - both informational and stigmatizing - was associated with more frequent outreach to others, but only informational coverage was related to greater willingness to seek treatment. Stigmatizing media exposure was related to greater depression stereotypes. Seeing more media stories celebrating Williams' life and career was associated with reduced depression stigma but also with less willingness to seek treatment for depression and less outreach to others. Implications of the findings for media and mental health are discussed.

  9. Shotgun protein sequencing.

    Energy Technology Data Exchange (ETDEWEB)

    Faulon, Jean-Loup Michel; Heffelfinger, Grant S.

    2009-06-01

    A novel experimental and computational technique based on multiple enzymatic digestion of a protein or protein mixture that reconstructs protein sequences from sequences of overlapping peptides is described in this SAND report. This approach, analogous to shotgun sequencing of DNA, is to be used to sequence alternative spliced proteins, to identify post-translational modifications, and to sequence genetically engineered proteins.

  10. Multimodal sequence learning.

    Science.gov (United States)

    Kemény, Ferenc; Meier, Beat

    2016-02-01

    While sequence learning research models complex phenomena, previous studies have mostly focused on unimodal sequences. The goal of the current experiment is to put implicit sequence learning into a multimodal context: to test whether it can operate across different modalities. We used the Task Sequence Learning paradigm to test whether sequence learning varies across modalities, and whether participants are able to learn multimodal sequences. Our results show that implicit sequence learning is very similar regardless of the source modality. However, the presence of correlated task and response sequences was required for learning to take place. The experiment provides new evidence for implicit sequence learning of abstract conceptual representations. In general, the results suggest that correlated sequences are necessary for implicit sequence learning to occur. Moreover, they show that elements from different modalities can be automatically integrated into one unitary multimodal sequence. Copyright © 2015 Elsevier B.V. All rights reserved.

  11. Sequence Read Archive (SRA)

    Data.gov (United States)

    U.S. Department of Health & Human Services — The Sequence Read Archive (SRA) stores raw sequencing data from the next generation of sequencing platforms including Roche 454 GS System®, Illumina Genome...

  12. Deficit Round Robin with Fragmentation Scheduling to Achieve Generalized Weighted Fairness for Resource Allocation in IEEE 802.16e Mobile WiMAX Networks

    Directory of Open Access Journals (Sweden)

    Chakchai So-In

    2010-10-01

    Full Text Available Deficit Round Robin (DRR is a fair packet-based scheduling discipline commonly used in wired networks where link capacities do not change with time. However, in wireless networks, especially wireless broadband networks, i.e., IEEE 802.16e Mobile WiMAX, there are two main considerations violate the packet-based service concept for DRR. First, the resources are allocated per Mobile WiMAX frame. To achieve full frame utilization, Mobile WiMAX allows packets to be fragmented. Second, due to a high variation in wireless channel conditions, the link/channel capacity can change over time and location. Therefore, we introduce a Deficit Round Robin with Fragmentation (DRRF to allocate resources per Mobile WiMAX frame in a fair manner by allowing for varying link capacity and for transmitting fragmented packets. Similar to DRR and Generalized Processor Sharing (GPS, DRRF achieves perfect fairness. DRRF results in a higher throughput than DRR (80% improvement while causing less overhead than GPS (8 times less than GPS. In addition, in Mobile WiMAX, the quality of service (QoS offered by service providers is associated with the price paid. This is similar to a cellular phone system; the users may be required to pay air-time charges. Hence, we have also formalized a Generalized Weighted Fairness (GWF criterion which equalizes a weighted sum of service time units or slots, called temporal fairness, and transmitted bytes, called throughput fairness, for customers who are located in a poor channel condition or at a further distance versus for those who are near the base stations, or have a good channel condition. We use DRRF to demonstrate the application of GWF. These fairness criteria are used to satisfy basic requirements for resource allocation, especially for non real-time traffic. Therefore, we also extend DRRF to support other QoS requirements, such as minimum reserved traffic rate, maximum sustained traffic rate, and traffic priority. For real

  13. The Round robin test of the PISC-2 programme: plates and ultrasonic procedures used PISC 2 report N.2. Final issue

    International Nuclear Information System (INIS)

    1986-09-01

    Ultrasonic testing is widely used for detecting, locating and sizing defects in primary circuit elements at various stages of plant life. The successive PISC projects have together made up a most notable sustained international effort to assess the effectiveness of these inspection techniques. The Plate Inspection Steering Committee (PISC-I) programme (1976-1980) was intended to establish the capabilities of manual ultrasonic procedure based on the 1974 ASME Code Section XI Procedure. The Programme for the Inspection of Steel Components (PISC-II, 1981-1986) constitutes a broader based evaluation of the best performance obtainable by modern ultrasonic techniques under optimal conditions. The present paper is the second in a series of reports currently being issued which describe the results of the PISC-II studies. Included are descriptions of the four round robin test plates and of the ultrasonic procedures applied to them by the participating inspection teams. The report also lists the participating organisations and gives the time schedule of the tests and an indication of the costs incurred

  14. Low self-esteem prospectively predicts depression in the transition to young adulthood: A replication of Orth, Robins, and Roberts (2008).

    Science.gov (United States)

    Rieger, Sven; Göllner, Richard; Trautwein, Ulrich; Roberts, Brent W

    2016-01-01

    The present study is a close replication of the work of Orth, Robins, and Roberts (2008). Orth et al. (2008) tested three theoretical models of the relation between self-esteem and depression--the vulnerability model, the scar model, and the common factor model--using longitudinal, cross-lagged panel designs. The authors concluded that depression and self-esteem were not the same construct (contrary to the common-factor model), and furthermore, the results were clearly in line with the vulnerability model and not with the scar model (low self-esteem predicts subsequent levels of depression and not vice versa). In addition, the results held for both men and women. To conduct a very close replication of the work of Orth et al. (2008), we used data from another large longitudinal study (N = 2,512), which is highly similar in study design and that contains the same measures (self-esteem and depression). The present study replicated the results of the Orth et al. (2008) study in a notable manner, in regard to the comparability of the coefficients, and therefore, corroborates the vulnerability model (and not the scar- or the common-factor model). (c) 2016 APA, all rights reserved).

  15. RILEM technical committee 195-DTD recommendation for test methods for AD and TD of early age concrete Round Robin documentation report : program, test results and statistical evaluation

    CERN Document Server

    Bjøntegaard, Øyvind; Krauss, Matias; Budelmann, Harald

    2015-01-01

    This report presents the Round-Robin (RR) program and test results including a statistical evaluation of the RILEM TC195-DTD committee named “Recommendation for test methods for autogenous deformation (AD) and thermal dilation (TD) of early age concrete”. The task of the committee was to investigate the linear test set-up for AD and TD measurements (Dilation Rigs) in the period from setting to the end of the hardening phase some weeks after. These are the stress-inducing deformations in a hardening concrete structure subjected to restraint conditions. The main task was to carry out an RR program on testing of AD of one concrete at 20 °C isothermal conditions in Dilation Rigs. The concrete part materials were distributed to 10 laboratories (Canada, Denmark, France, Germany, Japan, The Netherlands, Norway, Sweden and USA), and in total 30 tests on AD were carried out. Some supporting tests were also performed, as well as a smaller RR on cement paste. The committee has worked out a test procedure recommenda...

  16. Postulated Role of Vasoactive Neuropeptide-Related Immunopathology of the Blood Brain Barrier and Virchow-Robin Spaces in the Aetiology of Neurological-Related Conditions

    Directory of Open Access Journals (Sweden)

    D. R. Staines

    2008-01-01

    Full Text Available Vasoactive neuropeptides (VNs such as pituitary adenylate cyclase-activating polypeptide (PACAP and vasoactive intestinal peptide (VIP have critical roles as neurotransmitters, vasodilators including perfusion and hypoxia regulators, as well as immune and nociception modulators. They have key roles in blood vessels in the central nervous system (CNS including maintaining functional integrity of the blood brain barrier (BBB and blood spinal barrier (BSB. VNs are potent activators of adenylate cyclase and thus also have a key role in cyclic AMP production affecting regulatory T cell and other immune functions. Virchow-Robin spaces (VRSs are perivascular compartments surrounding small vessels within the CNS and contain VNs. Autoimmunity of VNs or VN receptors may affect BBB and VRS function and, therefore, may contribute to the aetiology of neurological-related conditions including multiple sclerosis, Parkinson's disease, and amyotrophic lateral sclerosis. VN autoimmunity will likely affect CNS and immunological homeostasis. Various pharmacological and immunological treatments including phosphodiesterase inhibitors and plasmapheresis may be indicated.

  17. Solid fuels - A round robin test of solid residual products from heating plants. Fasta braenslen - cirkelanalys av fasta restprodukter fraan foerbraenningsanlaeggningar

    Energy Technology Data Exchange (ETDEWEB)

    Burwall, J; Samuelsson, R [Sveriges Lanbruksuniversitet, Enheten foer Biomassa, Energi- och Fibergroedor, Umeaa (Sweden)

    1992-03-01

    A round robin test, where six ashes (three coal ashes and three bioashes) were analyzed with respect to 'fuelspecific' parameters, major and minor elements and trace elements, has been carried out. Thirteen laboratories from Sweden, Finland, Denmark and Norway participated and the purpose of the investigation was to compare and evaluate common methods of analysis for ashes. The standard deviation of the used methods was compared to the precision calculated from the reported reproducability in corresponding standard methods for fuels. The results show that, without taking the significant outliers into account, the precision of the analysis of moisture content, hydrogen, nitrogen, sulfur and the predominant part of major and minor elements was of the order of the corresponding analysis for fuels. The analysis of carbon and calorific value showed a variation somewhat higher than that for fuel analysis, while the results for volatile matter and the tracer elements were considerably less precise. The result for the amount of unburned matter showed significant groupings, not only between the ashes but also between the laboratories. The groupings were explained mainly by the different experimental parameters used during the ashing step. (au) (5 refs., 10 figs., 38 tabs.).

  18. Solid fuels - A round robin test of solid residual products from heating plants; Fasta braenslen - cirkelanalys av fasta restprodukter fraan foerbraenningsanlaeggningar

    Energy Technology Data Exchange (ETDEWEB)

    Burwall, J; Samuelsson, R [Sveriges Lanbruksuniversitet, Enheten foer Biomassa, Energi- och Fibergroedor, Umeaa (Sweden)

    1992-03-01

    A round robin test, where six ashes (three coal ashes and three bioashes) were analyzed with respect to `fuelspecific` parameters, major and minor elements and trace elements, has been carried out. Thirteen laboratories from Sweden, Finland, Denmark and Norway participated and the purpose of the investigation was to compare and evaluate common methods of analysis for ashes. The standard deviation of the used methods was compared to the precision calculated from the reported reproducability in corresponding standard methods for fuels. The results show that, without taking the significant outliers into account, the precision of the analysis of moisture content, hydrogen, nitrogen, sulfur and the predominant part of major and minor elements was of the order of the corresponding analysis for fuels. The analysis of carbon and calorific value showed a variation somewhat higher than that for fuel analysis, while the results for volatile matter and the tracer elements were considerably less precise. The result for the amount of unburned matter showed significant groupings, not only between the ashes but also between the laboratories. The groupings were explained mainly by the different experimental parameters used during the ashing step. (au) (5 refs., 10 figs., 38 tabs.).

  19. IAEA co-ordinated research program. 'Round Robin' on measuring the velocity of delayed hydride cracking (DHC)

    Energy Technology Data Exchange (ETDEWEB)

    Grigoriev, V.; Jakobsson, R. [Studsvik Material AB, Nykoeping (Sweden)

    1999-09-01

    The International Atomic Agency (IAEA) has initiated a new Co-ordinated Research Programme (CRP) on Hydrogen and hydride induced degradation of the mechanical and physical properties of Zirconium-based alloys. In the first phase of this CRP the methodology for measuring the velocity of Delayed Hydride Cracking (DHC) should be established and participating laboratories from about nine countries around the world carry out identical tests in 'round robin'. The objective of the present work is to establish at Studsvik laboratory the method of a constant load cracking test on unirradiated Zr-2.5Nb and attain a comparison of results between laboratories. Constant load tests are performed on specimens cut from unirradiated CANDU Zr-2.5Nb pressure tube and the rate of crack propagation is determined in each test. Pre-hydrided specimens for testing are supplied from the host laboratory. Six specimens have been tested for delayed hydride cracking (DHC) at 250 deg C. The axial crack growth velocities measured in the tests are within the interval of 8.62x10{sup -8} - 1.06x10{sup -7} m/s. The results obtained agree well with the earlier published data for similar materials and test conditions.

  20. Nonparametric combinatorial sequence models.

    Science.gov (United States)

    Wauthier, Fabian L; Jordan, Michael I; Jojic, Nebojsa

    2011-11-01

    This work considers biological sequences that exhibit combinatorial structures in their composition: groups of positions of the aligned sequences are "linked" and covary as one unit across sequences. If multiple such groups exist, complex interactions can emerge between them. Sequences of this kind arise frequently in biology but methodologies for analyzing them are still being developed. This article presents a nonparametric prior on sequences which allows combinatorial structures to emerge and which induces a posterior distribution over factorized sequence representations. We carry out experiments on three biological sequence families which indicate that combinatorial structures are indeed present and that combinatorial sequence models can more succinctly describe them than simpler mixture models. We conclude with an application to MHC binding prediction which highlights the utility of the posterior distribution over sequence representations induced by the prior. By integrating out the posterior, our method compares favorably to leading binding predictors.

  1. Genome Sequence Databases (Overview): Sequencing and Assembly

    Energy Technology Data Exchange (ETDEWEB)

    Lapidus, Alla L.

    2009-01-01

    From the date its role in heredity was discovered, DNA has been generating interest among scientists from different fields of knowledge: physicists have studied the three dimensional structure of the DNA molecule, biologists tried to decode the secrets of life hidden within these long molecules, and technologists invent and improve methods of DNA analysis. The analysis of the nucleotide sequence of DNA occupies a special place among the methods developed. Thanks to the variety of sequencing technologies available, the process of decoding the sequence of genomic DNA (or whole genome sequencing) has become robust and inexpensive. Meanwhile the assembly of whole genome sequences remains a challenging task. In addition to the need to assemble millions of DNA fragments of different length (from 35 bp (Solexa) to 800 bp (Sanger)), great interest in analysis of microbial communities (metagenomes) of different complexities raises new problems and pushes some new requirements for sequence assembly tools to the forefront. The genome assembly process can be divided into two steps: draft assembly and assembly improvement (finishing). Despite the fact that automatically performed assembly (or draft assembly) is capable of covering up to 98% of the genome, in most cases, it still contains incorrectly assembled reads. The error rate of the consensus sequence produced at this stage is about 1/2000 bp. A finished genome represents the genome assembly of much higher accuracy (with no gaps or incorrectly assembled areas) and quality ({approx}1 error/10,000 bp), validated through a number of computer and laboratory experiments.

  2. Long sequence correlation coprocessor

    Science.gov (United States)

    Gage, Douglas W.

    1994-09-01

    A long sequence correlation coprocessor (LSCC) accelerates the bitwise correlation of arbitrarily long digital sequences by calculating in parallel the correlation score for 16, for example, adjacent bit alignments between two binary sequences. The LSCC integrated circuit is incorporated into a computer system with memory storage buffers and a separate general purpose computer processor which serves as its controller. Each of the LSCC's set of sequential counters simultaneously tallies a separate correlation coefficient. During each LSCC clock cycle, computer enable logic associated with each counter compares one bit of a first sequence with one bit of a second sequence to increment the counter if the bits are the same. A shift register assures that the same bit of the first sequence is simultaneously compared to different bits of the second sequence to simultaneously calculate the correlation coefficient by the different counters to represent different alignments of the two sequences.

  3. Roles of repetitive sequences

    Energy Technology Data Exchange (ETDEWEB)

    Bell, G.I.

    1991-12-31

    The DNA of higher eukaryotes contains many repetitive sequences. The study of repetitive sequences is important, not only because many have important biological function, but also because they provide information on genome organization, evolution and dynamics. In this paper, I will first discuss some generic effects that repetitive sequences will have upon genome dynamics and evolution. In particular, it will be shown that repetitive sequences foster recombination among, and turnover of, the elements of a genome. I will then consider some examples of repetitive sequences, notably minisatellite sequences and telomere sequences as examples of tandem repeats, without and with respectively known function, and Alu sequences as an example of interspersed repeats. Some other examples will also be considered in less detail.

  4. Anomaly Detection in Sequences

    Data.gov (United States)

    National Aeronautics and Space Administration — We present a set of novel algorithms which we call sequenceMiner, that detect and characterize anomalies in large sets of high-dimensional symbol sequences that...

  5. DNA sequencing conference, 2

    Energy Technology Data Exchange (ETDEWEB)

    Cook-Deegan, R.M. [Georgetown Univ., Kennedy Inst. of Ethics, Washington, DC (United States); Venter, J.C. [National Inst. of Neurological Disorders and Strokes, Bethesda, MD (United States); Gilbert, W. [Harvard Univ., Cambridge, MA (United States); Mulligan, J. [Stanford Univ., CA (United States); Mansfield, B.K. [Oak Ridge National Lab., TN (United States)

    1991-06-19

    This conference focused on DNA sequencing, genetic linkage mapping, physical mapping, informatics and bioethics. Several were used to study this sequencing and mapping. This article also discusses computer hardware and software aiding in the mapping of genes.

  6. sequenceMiner algorithm

    Data.gov (United States)

    National Aeronautics and Space Administration — Detecting and describing anomalies in large repositories of discrete symbol sequences. sequenceMiner has been open-sourced! Download the file below to try it out....

  7. SeaWiFS technical report series. Volume 26: Results of the SeaWiFS Data Analysis Round-Robin, July 1994 (DARR-1994)

    Science.gov (United States)

    Hooker, Stanford B. (Editor); Firestone, Elaine R. (Editor); Siegel, David A.; Obrien, Margaret C.; Sorensen, Jen C.; Konnoff, Daniel A.; Brody, Eric A.; Mueller, James L.; Davis, Curtiss O.; Rhea, W. Joseph

    1995-01-01

    The accurate determination of upper ocean apparent optical properties (AOP's) is essential for the vicarious calibration of the sea-viewing wide field-of-view sensor (SeaWiFS) instrument and the validation of the derived data products. To evaluate the role that data analysis methods have upon values of derived AOP's, the first Data Analysis Round-Robin (DARR-94) workshop was sponsored by the SeaWiFS Project during 21-23 July, 1994. The focus of this intercomparison study was the estimation of the downwelling irradiance spectrum just beneath the sea surface, E(sub d)(0(sup -), lambda); the upwelling nadir radiance just beneath the sea surface, L(sub u)(0(sup -), lambda); and the vertical profile of the diffuse attenuation coefficient spectrum, K(sub d)(z, lambda). In the results reported here, different methodologies from four research groups were applied to an identical set of 10 spectroradiometry casts in order to evaluate the degree to which data analysis methods influence AOP estimation, and whether any general improvements can be made. The overall results of DARR-94 are presented in Chapter 1 and the individual methods of the four groups are presented in Chapters 2-5. The DARR-94 results do not show a clear winner among data analysis methods evaluated. It is apparent, however, that some degree of outlier rejection is required in order to accurately estimate L(sub u)(0(sup -), lambda) or E(sub d)(0(sup -), lambda). Furthermore, the calculation, evaluation and exploitation of confidence intervals for the AOP determinations needs to be explored. That is, the SeaWiFS calibration and validation problem should be recast in statistical terms where the in situ AOP values are statistical estimates with known confidence intervals.

  8. Validation and inter-comparison of surface elevation changes derived from altimetry over the Jakobshavn Isbræ drainage basin, Greenland – Round Robin results from ESA's Ice_Sheets_CCI (ID #EGU2013-6007)

    DEFF Research Database (Denmark)

    Fredenslund Levinsen, Joanna; Khvorostovsky, Kirill; Ticconi, Francesca

    elevation changes (SEC), surface velocities, calving front locations, and grounding line locations. This work focuses on SEC, and the goal is to develop the best routine for estimating this by means of radar altimetry. In order to find the most optimal approach we have completed a Round Robin experiment (RR......In order to ensure long-term climate records, ESA has launched the Climate Change Initiative (ESA CCI), which puts focus on 13 different Essential Climate Variables, one of them being Ice Sheets. In this program, four selected key parameters will be determined for the Greenland Ice Sheet: Surface...

  9. Sequences for Student Investigation

    Science.gov (United States)

    Barton, Jeffrey; Feil, David; Lartigue, David; Mullins, Bernadette

    2004-01-01

    We describe two classes of sequences that give rise to accessible problems for undergraduate research. These problems may be understood with virtually no prerequisites and are well suited for computer-aided investigation. The first sequence is a variation of one introduced by Stephen Wolfram in connection with his study of cellular automata. The…

  10. Sequence History Update Tool

    Science.gov (United States)

    Khanampompan, Teerapat; Gladden, Roy; Fisher, Forest; DelGuercio, Chris

    2008-01-01

    The Sequence History Update Tool performs Web-based sequence statistics archiving for Mars Reconnaissance Orbiter (MRO). Using a single UNIX command, the software takes advantage of sequencing conventions to automatically extract the needed statistics from multiple files. This information is then used to populate a PHP database, which is then seamlessly formatted into a dynamic Web page. This tool replaces a previous tedious and error-prone process of manually editing HTML code to construct a Web-based table. Because the tool manages all of the statistics gathering and file delivery to and from multiple data sources spread across multiple servers, there is also a considerable time and effort savings. With the use of The Sequence History Update Tool what previously took minutes is now done in less than 30 seconds, and now provides a more accurate archival record of the sequence commanding for MRO.

  11. HIV Sequence Compendium 2015

    Energy Technology Data Exchange (ETDEWEB)

    Foley, Brian Thomas [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Leitner, Thomas Kenneth [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Apetrei, Cristian [Univ. of Pittsburgh, PA (United States); Hahn, Beatrice [Univ. of Pennsylvania, Philadelphia, PA (United States); Mizrachi, Ilene [National Center for Biotechnology Information, Bethesda, MD (United States); Mullins, James [Univ. of Washington, Seattle, WA (United States); Rambaut, Andrew [Univ. of Edinburgh, Scotland (United Kingdom); Wolinsky, Steven [Northwestern Univ., Evanston, IL (United States); Korber, Bette Tina Marie [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2015-10-05

    This compendium is an annual printed summary of the data contained in the HIV sequence database. We try to present a judicious selection of the data in such a way that it is of maximum utility to HIV researchers. Each of the alignments attempts to display the genetic variability within the different species, groups and subtypes of the virus. This compendium contains sequences published before January 1, 2015. Hence, though it is published in 2015 and called the 2015 Compendium, its contents correspond to the 2014 curated alignments on our website. The number of sequences in the HIV database is still increasing. In total, at the end of 2014, there were 624,121 sequences in the HIV Sequence Database, an increase of 7% since the previous year. This is the first year that the number of new sequences added to the database has decreased compared to the previous year. The number of near complete genomes (>7000 nucleotides) increased to 5834 by end of 2014. However, as in previous years, the compendium alignments contain only a fraction of these. A more complete version of all alignments is available on our website, http://www.hiv.lanl.gov/ content/sequence/NEWALIGN/align.html As always, we are open to complaints and suggestions for improvement. Inquiries and comments regarding the compendium should be addressed to seq-info@lanl.gov.

  12. Mapping sequences by parts

    Directory of Open Access Journals (Sweden)

    Guziolowski Carito

    2007-09-01

    Full Text Available Abstract Background: We present the N-map method, a pairwise and asymmetrical approach which allows us to compare sequences by taking into account evolutionary events that produce shuffled, reversed or repeated elements. Basically, the optimal N-map of a sequence s over a sequence t is the best way of partitioning the first sequence into N parts and placing them, possibly complementary reversed, over the second sequence in order to maximize the sum of their gapless alignment scores. Results: We introduce an algorithm computing an optimal N-map with time complexity O (|s| × |t| × N using O (|s| × |t| × N memory space. Among all the numbers of parts taken in a reasonable range, we select the value N for which the optimal N-map has the most significant score. To evaluate this significance, we study the empirical distributions of the scores of optimal N-maps and show that they can be approximated by normal distributions with a reasonable accuracy. We test the functionality of the approach over random sequences on which we apply artificial evolutionary events. Practical Application: The method is illustrated with four case studies of pairs of sequences involving non-standard evolutionary events.

  13. The Colliding Beams Sequencer

    International Nuclear Information System (INIS)

    Johnson, D.E.; Johnson, R.P.

    1989-01-01

    The Colliding Beam Sequencer (CBS) is a computer program used to operate the pbar-p Collider by synchronizing the applications programs and simulating the activities of the accelerator operators during filling and storage. The Sequencer acts as a meta-program, running otherwise stand alone applications programs, to do the set-up, beam transfers, acceleration, low beta turn on, and diagnostics for the transfers and storage. The Sequencer and its operational performance will be described along with its special features which include a periodic scheduler and command logger. 14 refs., 3 figs

  14. Phylogenetic Trees From Sequences

    Science.gov (United States)

    Ryvkin, Paul; Wang, Li-San

    In this chapter, we review important concepts and approaches for phylogeny reconstruction from sequence data.We first cover some basic definitions and properties of phylogenetics, and briefly explain how scientists model sequence evolution and measure sequence divergence. We then discuss three major approaches for phylogenetic reconstruction: distance-based phylogenetic reconstruction, maximum parsimony, and maximum likelihood. In the third part of the chapter, we review how multiple phylogenies are compared by consensus methods and how to assess confidence using bootstrapping. At the end of the chapter are two sections that list popular software packages and additional reading.

  15. Gomphid DNA sequence data

    Data.gov (United States)

    U.S. Environmental Protection Agency — DNA sequence data for several genetic loci. This dataset is not publicly accessible because: It's already publicly available on GenBank. It can be accessed through...

  16. Yeast genome sequencing:

    DEFF Research Database (Denmark)

    Piskur, Jure; Langkjær, Rikke Breinhold

    2004-01-01

    For decades, unicellular yeasts have been general models to help understand the eukaryotic cell and also our own biology. Recently, over a dozen yeast genomes have been sequenced, providing the basis to resolve several complex biological questions. Analysis of the novel sequence data has shown...... of closely related species helps in gene annotation and to answer how many genes there really are within the genomes. Analysis of non-coding regions among closely related species has provided an example of how to determine novel gene regulatory sequences, which were previously difficult to analyse because...... they are short and degenerate and occupy different positions. Comparative genomics helps to understand the origin of yeasts and points out crucial molecular events in yeast evolutionary history, such as whole-genome duplication and horizontal gene transfer(s). In addition, the accumulating sequence data provide...

  17. Dynamic Sequence Assignment.

    Science.gov (United States)

    1983-12-01

    D-136 548 DYNAMIIC SEQUENCE ASSIGNMENT(U) ADVANCED INFORMATION AND 1/2 DECISION SYSTEMS MOUNTAIN YIELW CA C A 0 REILLY ET AL. UNCLSSIIED DEC 83 AI/DS...I ADVANCED INFORMATION & DECISION SYSTEMS Mountain View. CA 94040 84 u ,53 V,..’. Unclassified _____ SCURITY CLASSIFICATION OF THIS PAGE REPORT...reviews some important heuristic algorithms developed for fas- ter solution of the sequence assignment problem. 3.1. DINAMIC MOGRAMUNIG FORMULATION FOR

  18. HIV Sequence Compendium 2010

    Energy Technology Data Exchange (ETDEWEB)

    Kuiken, Carla [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Foley, Brian [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Leitner, Thomas [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Apetrei, Christian [Univ. of Pittsburgh, PA (United States); Hahn, Beatrice [Univ. of Alabama, Tuscaloosa, AL (United States); Mizrachi, Ilene [National Center for Biotechnology Information, Bethesda, MD (United States); Mullins, James [Univ. of Washington, Seattle, WA (United States); Rambaut, Andrew [Univ. of Edinburgh, Scotland (United Kingdom); Wolinsky, Steven [Northwestern Univ., Evanston, IL (United States); Korber, Bette [Los Alamos National Lab. (LANL), Los Alamos, NM (United States)

    2010-12-31

    This compendium is an annual printed summary of the data contained in the HIV sequence database. In these compendia we try to present a judicious selection of the data in such a way that it is of maximum utility to HIV researchers. Each of the alignments attempts to display the genetic variability within the different species, groups and subtypes of the virus. This compendium contains sequences published before January 1, 2010. Hence, though it is called the 2010 Compendium, its contents correspond to the 2009 curated alignments on our website. The number of sequences in the HIV database is still increasing exponentially. In total, at the time of printing, there were 339,306 sequences in the HIV Sequence Database, an increase of 45% since last year. The number of near complete genomes (>7000 nucleotides) increased to 2576 by end of 2009, reflecting a smaller increase than in previous years. However, as in previous years, the compendium alignments contain only a small fraction of these. Included in the alignments are a small number of sequences representing each of the subtypes and the more prevalent circulating recombinant forms (CRFs) such as 01 and 02, as well as a few outgroup sequences (group O and N and SIV-CPZ). Of the rarer CRFs we included one representative each. A more complete version of all alignments is available on our website, http://www.hiv.lanl.gov/content/sequence/NEWALIGN/align.html. Reprints are available from our website in the form of both HTML and PDF files. As always, we are open to complaints and suggestions for improvement. Inquiries and comments regarding the compendium should be addressed to seq-info@lanl.gov.

  19. General LTE Sequence

    OpenAIRE

    Billal, Masum

    2015-01-01

    In this paper,we have characterized sequences which maintain the same property described in Lifting the Exponent Lemma. Lifting the Exponent Lemma is a very powerful tool in olympiad number theory and recently it has become very popular. We generalize it to all sequences that maintain a property like it i.e. if p^{\\alpha}||a_k and p^\\b{eta}||n, then p^{{\\alpha}+\\b{eta}}||a_{nk}.

  20. Pairwise Sequence Alignment Library

    Energy Technology Data Exchange (ETDEWEB)

    2015-05-20

    Vector extensions, such as SSE, have been part of the x86 CPU since the 1990s, with applications in graphics, signal processing, and scientific applications. Although many algorithms and applications can naturally benefit from automatic vectorization techniques, there are still many that are difficult to vectorize due to their dependence on irregular data structures, dense branch operations, or data dependencies. Sequence alignment, one of the most widely used operations in bioinformatics workflows, has a computational footprint that features complex data dependencies. The trend of widening vector registers adversely affects the state-of-the-art sequence alignment algorithm based on striped data layouts. Therefore, a novel SIMD implementation of a parallel scan-based sequence alignment algorithm that can better exploit wider SIMD units was implemented as part of the Parallel Sequence Alignment Library (parasail). Parasail features: Reference implementations of all known vectorized sequence alignment approaches. Implementations of Smith Waterman (SW), semi-global (SG), and Needleman Wunsch (NW) sequence alignment algorithms. Implementations across all modern CPU instruction sets including AVX2 and KNC. Language interfaces for C/C++ and Python.

  1. Adaptive Processing for Sequence Alignment

    KAUST Repository

    Zidan, Mohammed A.; Bonny, Talal; Salama, Khaled N.

    2012-01-01

    Disclosed are various embodiments for adaptive processing for sequence alignment. In one embodiment, among others, a method includes obtaining a query sequence and a plurality of database sequences. A first portion of the plurality of database sequences is distributed to a central processing unit (CPU) and a second portion of the plurality of database sequences is distributed to a graphical processing unit (GPU) based upon a predetermined splitting ratio associated with the plurality of database sequences, where the database sequences of the first portion are shorter than the database sequences of the second portion. A first alignment score for the query sequence is determined with the CPU based upon the first portion of the plurality of database sequences and a second alignment score for the query sequence is determined with the GPU based upon the second portion of the plurality of database sequences.

  2. Adaptive Processing for Sequence Alignment

    KAUST Repository

    Zidan, Mohammed A.

    2012-01-26

    Disclosed are various embodiments for adaptive processing for sequence alignment. In one embodiment, among others, a method includes obtaining a query sequence and a plurality of database sequences. A first portion of the plurality of database sequences is distributed to a central processing unit (CPU) and a second portion of the plurality of database sequences is distributed to a graphical processing unit (GPU) based upon a predetermined splitting ratio associated with the plurality of database sequences, where the database sequences of the first portion are shorter than the database sequences of the second portion. A first alignment score for the query sequence is determined with the CPU based upon the first portion of the plurality of database sequences and a second alignment score for the query sequence is determined with the GPU based upon the second portion of the plurality of database sequences.

  3. NMR measurement of identical polymer samples by round robin method. 4. Analysis of composition and monomer sequence distribution in poly(methyl methacrylate-co-acrylonitrile) leading to determinations of monomer reactivity ratios

    International Nuclear Information System (INIS)

    Hatada, Koichi; Kitayama, Tatsuki; Terawaki, Yoshio

    1995-01-01

    In order to assess the reliability of NMR measurement of polymers, 1 H and 13 C NMR data for three copolymers of methyl methacrylate (MMA) and acrylonitrile (AN) prepared with AIBN were collected from 46 spectrometers whose resonance frequencies for 1 H NMR measurements ranging from 90 to 500 MHz. 1 H and 13 C NMR spectra were measured in nitrobenzene-d 5 at 110degC and acetonitrile-d 3 at 70degC, respectively. Standard deviations (σ's) for chemical shift measurements of the 1 H and 13 C NMR signals were 0.003-0.008 ppm and 0.03-0.05 ppm, respectively. Compositions of the copolymers were determined from the relative intensities of the signals due to the OCH 3 (MMA) and CH (AN) protons, and the σ values for the determinations were 3.7-9.5%. The compositions determined from 13 C NMR (C = O for MMA unit, CN for AN unit) agreed well with those obtained from 1 H NMR. Monomer reactivity ratios r ij (i,j = 1 or 2) for a penultimate model were determined from monomer feed ratios and triad fractions obtained from the C = O (MMA) and CH (AN) carbon signals. Most of the σ values for r ij determinations were 5-14%. While r 22 and r 12 are nearly equivalent, r 11 and r 21 are significantly different from each other, indicating a possible existence of the penultimate-unit effect in the copolymerization of MMA and AN. Terminal model reactivity ratios, r 1 and r 2 , determined formally from the compositions of three samples by Fineman-Ross method showed large σ values (22-24%). (author)

  4. Main sequence mass loss

    International Nuclear Information System (INIS)

    Brunish, W.M.; Guzik, J.A.; Willson, L.A.; Bowen, G.

    1987-01-01

    It has been hypothesized that variable stars may experience mass loss, driven, at least in part, by oscillations. The class of stars we are discussing here are the δ Scuti variables. These are variable stars with masses between about 1.2 and 2.25 M/sub θ/, lying on or very near the main sequence. According to this theory, high rotation rates enhance the rate of mass loss, so main sequence stars born in this mass range would have a range of mass loss rates, depending on their initial rotation velocity and the amplitude of the oscillations. The stars would evolve rapidly down the main sequence until (at about 1.25 M/sub θ/) a surface convection zone began to form. The presence of this convective region would slow the rotation, perhaps allowing magnetic braking to occur, and thus sharply reduce the mass loss rate. 7 refs

  5. Electricity sequence control

    International Nuclear Information System (INIS)

    Shin, Heung Ryeol

    2010-03-01

    The contents of the book are introduction of control system, like classification and control signal, introduction of electricity power switch, such as push-button and detection switch sensor for induction type and capacitance type machinery for control, solenoid valve, expression of sequence and type of electricity circuit about using diagram, time chart, marking and term, logic circuit like Yes, No, and, or and equivalence logic, basic electricity circuit, electricity sequence control, added condition, special program control about choice and jump of program, motor control, extra circuit on repeat circuit, pause circuit in a conveyer, safety regulations and rule about classification of electricity disaster and protective device for insulation.

  6. Next-generation sequencing

    DEFF Research Database (Denmark)

    Rieneck, Klaus; Bak, Mads; Jønson, Lars

    2013-01-01

    , Illumina); several millions of PCR sequences were analyzed. RESULTS: The results demonstrated the feasibility of diagnosing the fetal KEL1 or KEL2 blood group from cell-free DNA purified from maternal plasma. CONCLUSION: This method requires only one primer pair, and the large amount of sequence...... information obtained allows well for statistical analysis of the data. This general approach can be integrated into current laboratory practice and has numerous applications. Besides DNA-based predictions of blood group phenotypes, platelet phenotypes, or sickle cell anemia, and the determination of zygosity...

  7. Biological sequence analysis

    DEFF Research Database (Denmark)

    Durbin, Richard; Eddy, Sean; Krogh, Anders Stærmose

    This book provides an up-to-date and tutorial-level overview of sequence analysis methods, with particular emphasis on probabilistic modelling. Discussed methods include pairwise alignment, hidden Markov models, multiple alignment, profile searches, RNA secondary structure analysis, and phylogene...

  8. THE RHIC SEQUENCER

    International Nuclear Information System (INIS)

    VAN ZEIJTS, J.; DOTTAVIO, T.; FRAK, B.; MICHNOFF, R.

    2001-01-01

    The Relativistic Heavy Ion Collider (RHIC) has a high level asynchronous time-line driven by a controlling program called the ''Sequencer''. Most high-level magnet and beam related issues are orchestrated by this system. The system also plays an important task in coordinated data acquisition and saving. We present the program, operator interface, operational impact and experience

  9. Twin anemia polycythemia sequence

    NARCIS (Netherlands)

    Slaghekke, Femke

    2014-01-01

    In this thesis we describe that Twin Anemia Polycythemia Sequence (TAPS) is a form of chronic feto-fetal transfusion in monochorionic (identical) twins based on a small amount of blood transfusion through very small anastomoses. For the antenatal diagnosis of TAPS, Middle Cerebral Artery – Peak

  10. simple sequence repeat (SSR)

    African Journals Online (AJOL)

    In the present study, 78 mapped simple sequence repeat (SSR) markers representing 11 linkage groups of adzuki bean were evaluated for transferability to mungbean and related Vigna spp. 41 markers amplified characteristic bands in at least one Vigna species. The transferability percentage across the genotypes ranged ...

  11. Targeted sequencing of plant genomes

    Science.gov (United States)

    Mark D. Huynh

    2014-01-01

    Next-generation sequencing (NGS) has revolutionized the field of genetics by providing a means for fast and relatively affordable sequencing. With the advancement of NGS, wholegenome sequencing (WGS) has become more commonplace. However, sequencing an entire genome is still not cost effective or even beneficial in all cases. In studies that do not require a whole-...

  12. Almost convergence of triple sequences

    OpenAIRE

    Ayhan Esi; M.Necdet Catalbas

    2013-01-01

    In this paper we introduce and study the concepts of almost convergence and almost Cauchy for triple sequences. Weshow that the set of almost convergent triple sequences of 0's and 1's is of the first category and also almost everytriple sequence of 0's and 1's is not almost convergent.Keywords: almost convergence, P-convergent, triple sequence.

  13. A few Smarandache Integer Sequences

    OpenAIRE

    Ibstedt, Henry

    2010-01-01

    This paper deals with the analysis of a few Smarandache Integer Sequences which first appeared in Properties or the Numbers, F. Smarandache, University or Craiova Archives, 1975. The first four sequences are recurrence generated sequences while the last three are concatenation sequences.

  14. Allele Re-sequencing Technologies

    DEFF Research Database (Denmark)

    Byrne, Stephen; Farrell, Jacqueline Danielle; Asp, Torben

    2013-01-01

    The development of next-generation sequencing technologies has made sequencing an affordable approach for detection of genetic variations associated with various traits. However, the cost of whole genome re-sequencing still remains too high to be feasible for many plant species with large...... alternative to whole genome re-sequencing to identify causative genetic variations in plants. One challenge, however, will be efficient bioinformatics strategies for data handling and analysis from the increasing amount of sequence information....

  15. Multilocus Sequence Typing

    OpenAIRE

    Belén, Ana; Pavón, Ibarz; Maiden, Martin C.J.

    2009-01-01

    Multilocus sequence typing (MLST) was first proposed in 1998 as a typing approach that enables the unambiguous characterization of bacterial isolates in a standardized, reproducible, and portable manner using the human pathogen Neisseria meningitidis as the exemplar organism. Since then, the approach has been applied to a large and growing number of organisms by public health laboratories and research institutions. MLST data, shared by investigators over the world via the Internet, have been ...

  16. Achalasia Carcinoma Sequence

    OpenAIRE

    Makmun, Dadang

    2001-01-01

    We report a case of carcinoma of the esophagus in a 58 years old woman with achalasia, who has been diagnosed since 30 years ago, which initiated by surgical treatment (myotomy) and the symptoms recurred since 3 years ago. According to the progress of the disease, Malignancy was strongly suspected due to prolonged stasis and mucosal irritation caused by achalasia (achalasia carcinoma sequence). Because of these contributing factors for the development of serious complications such as Malignan...

  17. Sequencing BPS spectra

    Energy Technology Data Exchange (ETDEWEB)

    Gukov, Sergei [Walter Burke Institute for Theoretical Physics, California Institute of Technology,1200 E California Blvd, Pasadena, CA 91125 (United States); Max-Planck-Institut für Mathematik,Vivatsgasse 7, D-53111 Bonn (Germany); Nawata, Satoshi [Walter Burke Institute for Theoretical Physics, California Institute of Technology,1200 E California Blvd, Pasadena, CA 91125 (United States); Centre for Quantum Geometry of Moduli Spaces, University of Aarhus,Nordre Ringgade 1, DK-8000 (Denmark); Saberi, Ingmar [Walter Burke Institute for Theoretical Physics, California Institute of Technology,1200 E California Blvd, Pasadena, CA 91125 (United States); Stošić, Marko [CAMGSD, Departamento de Matemática, Instituto Superior Técnico,Av. Rovisco Pais, 1049-001 Lisbon (Portugal); Mathematical Institute SANU,Knez Mihajlova 36, 11000 Belgrade (Serbia); Sułkowski, Piotr [Walter Burke Institute for Theoretical Physics, California Institute of Technology,1200 E California Blvd, Pasadena, CA 91125 (United States); Faculty of Physics, University of Warsaw,ul. Pasteura 5, 02-093 Warsaw (Poland)

    2016-03-02

    This paper provides both a detailed study of color-dependence of link homologies, as realized in physics as certain spaces of BPS states, and a broad study of the behavior of BPS states in general. We consider how the spectrum of BPS states varies as continuous parameters of a theory are perturbed. This question can be posed in a wide variety of physical contexts, and we answer it by proposing that the relationship between unperturbed and perturbed BPS spectra is described by a spectral sequence. These general considerations unify previous applications of spectral sequence techniques to physics, and explain from a physical standpoint the appearance of many spectral sequences relating various link homology theories to one another. We also study structural properties of colored HOMFLY homology for links and evaluate Poincaré polynomials in numerous examples. Among these structural properties is a novel “sliding” property, which can be explained by using (refined) modular S-matrix. This leads to the identification of modular transformations in Chern-Simons theory and 3d N=2 theory via the 3d/3d correspondence. Lastly, we introduce the notion of associated varieties as classical limits of recursion relations of colored superpolynomials of links, and study their properties.

  18. Sequencing BPS spectra

    International Nuclear Information System (INIS)

    Gukov, Sergei; Nawata, Satoshi; Saberi, Ingmar; Stošić, Marko; Sułkowski, Piotr

    2016-01-01

    This paper provides both a detailed study of color-dependence of link homologies, as realized in physics as certain spaces of BPS states, and a broad study of the behavior of BPS states in general. We consider how the spectrum of BPS states varies as continuous parameters of a theory are perturbed. This question can be posed in a wide variety of physical contexts, and we answer it by proposing that the relationship between unperturbed and perturbed BPS spectra is described by a spectral sequence. These general considerations unify previous applications of spectral sequence techniques to physics, and explain from a physical standpoint the appearance of many spectral sequences relating various link homology theories to one another. We also study structural properties of colored HOMFLY homology for links and evaluate Poincaré polynomials in numerous examples. Among these structural properties is a novel “sliding” property, which can be explained by using (refined) modular S-matrix. This leads to the identification of modular transformations in Chern-Simons theory and 3d N=2 theory via the 3d/3d correspondence. Lastly, we introduce the notion of associated varieties as classical limits of recursion relations of colored superpolynomials of links, and study their properties.

  19. Image sequence analysis

    CERN Document Server

    1981-01-01

    The processing of image sequences has a broad spectrum of important applica­ tions including target tracking, robot navigation, bandwidth compression of TV conferencing video signals, studying the motion of biological cells using microcinematography, cloud tracking, and highway traffic monitoring. Image sequence processing involves a large amount of data. However, because of the progress in computer, LSI, and VLSI technologies, we have now reached a stage when many useful processing tasks can be done in a reasonable amount of time. As a result, research and development activities in image sequence analysis have recently been growing at a rapid pace. An IEEE Computer Society Workshop on Computer Analysis of Time-Varying Imagery was held in Philadelphia, April 5-6, 1979. A related special issue of the IEEE Transactions on Pattern Anal­ ysis and Machine Intelligence was published in November 1980. The IEEE Com­ puter magazine has also published a special issue on the subject in 1981. The purpose of this book ...

  20. Dynamic Behavior Sequencing in a Hybrid Robot Architecture

    Science.gov (United States)

    2008-03-01

    robots to represent and execute procedures, scripts , and plans in dynamic environ- ments [24]. Ingrand et al. describe the PRS as the link between the...based language in a similar style to Java that follows a model-based programming approach. A model-based programming approach refers to embedded...refers to the angular orientation of the robot from its initial heading. Therefore, the θ parameter value of zero (0) indicates that the desired

  1. The Latin American experience with the PRS approach

    NARCIS (Netherlands)

    K. Komives (Kristin); A.G. Dijkstra (Geske)

    2009-01-01

    textabstractIntroduction In 1999, countries that wished to qualify for the Enhanced Initiative for the Heavily Indebted Poor Countries (HIPC initiative) had to elaborate Poverty Reduction Strategy Papers (PRSP) and had to do so with participation of civil society. Since then, the elaboration and

  2. Process optimization of a non-circular drawing sequence based on multi-surrogate assisted meta-heuristic algorithms

    Energy Technology Data Exchange (ETDEWEB)

    Pholdee, Nantiwat; Bureerat, Su Jin [Khon Kaen University, Khon Kaen (Thailand); Baek, Hyun Moo [DTaQ, Changwon (Korea, Republic of); Im, Yong Taek [KAIST, Daejeon (Korea, Republic of)

    2015-08-15

    Process optimization of a Non-circular drawing (NCD) sequence of a pearlitic steel wire was performed to improve the mechanical properties of a drawn wire based on surrogate assisted meta-heuristic algorithms. The objective function was introduced to minimize inhomogeneity of effective strain distribution at the cross-section of the drawn wire, which could deteriorate delamination characteristics of the drawn wires. The design variables introduced were die geometry and reduction of area of the NCD sequence. Several surrogate models and their combinations with the weighted sum technique were utilized. In the process optimization of the NCD sequence, the surrogate models were used to predict effective strain distributions at the cross-section of the drawn wire. Optimization using Differential evolution (DE) algorithm was performed, while the objective function was calculated from the predicted effective strains. The accuracy of all surrogate models was investigated, while optimum results were compared with the previous study available in the literature. It was found that hybrid surrogate models can improve prediction accuracy compared to a single surrogate model. The best result was obtained from the combination of Kriging (KG) and Support vector regression (SVR) models, while the second best was obtained from the combination of four surrogate models: Polynomial response surface (PRS), Radial basic function (RBF), KG, and SVR. The optimum results found in this study showed better effective strain homogeneity at the cross-section of the drawn wire with the same total reduction of area of the previous work available in the literature for fewer number of passes. The multi-surrogate models with the weighted sum technique were found to be powerful in improving the delamination characteristics of the drawn wire and reducing the production cost.

  3. Foundations of Sequence-to-Sequence Modeling for Time Series

    OpenAIRE

    Kuznetsov, Vitaly; Mariet, Zelda

    2018-01-01

    The availability of large amounts of time series data, paired with the performance of deep-learning algorithms on a broad class of problems, has recently led to significant interest in the use of sequence-to-sequence models for time series forecasting. We provide the first theoretical analysis of this time series forecasting framework. We include a comparison of sequence-to-sequence modeling to classical time series models, and as such our theory can serve as a quantitative guide for practiti...

  4. Novel expressed sequence tag- simple sequence repeats (EST ...

    African Journals Online (AJOL)

    Using different bioinformatic criteria, the SUCEST database was used to mine for simple sequence repeat (SSR) markers. Among 42,189 clusters, 1,425 expressed sequence tag- simple sequence repeats (EST-SSRs) were identified in silico. Trinucleotide repeats were the most abundant SSRs detected. Of 212 primer pairs ...

  5. Infinite sequences and series

    CERN Document Server

    Knopp, Konrad

    1956-01-01

    One of the finest expositors in the field of modern mathematics, Dr. Konrad Knopp here concentrates on a topic that is of particular interest to 20th-century mathematicians and students. He develops the theory of infinite sequences and series from its beginnings to a point where the reader will be in a position to investigate more advanced stages on his own. The foundations of the theory are therefore presented with special care, while the developmental aspects are limited by the scope and purpose of the book. All definitions are clearly stated; all theorems are proved with enough detail to ma

  6. Fast global sequence alignment technique

    KAUST Repository

    Bonny, Mohamed Talal; Salama, Khaled N.

    2011-01-01

    fast alignment algorithm, called 'Alignment By Scanning' (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the wellknown sequence alignment algorithms, the 'GAP' (which is heuristic) and the 'Needleman

  7. Next-Generation Sequencing Platforms

    Science.gov (United States)

    Mardis, Elaine R.

    2013-06-01

    Automated DNA sequencing instruments embody an elegant interplay among chemistry, engineering, software, and molecular biology and have built upon Sanger's founding discovery of dideoxynucleotide sequencing to perform once-unfathomable tasks. Combined with innovative physical mapping approaches that helped to establish long-range relationships between cloned stretches of genomic DNA, fluorescent DNA sequencers produced reference genome sequences for model organisms and for the reference human genome. New types of sequencing instruments that permit amazing acceleration of data-collection rates for DNA sequencing have been developed. The ability to generate genome-scale data sets is now transforming the nature of biological inquiry. Here, I provide an historical perspective of the field, focusing on the fundamental developments that predated the advent of next-generation sequencing instruments and providing information about how these instruments work, their application to biological research, and the newest types of sequencers that can extract data from single DNA molecules.

  8. Rapid Polymer Sequencer

    Science.gov (United States)

    Stolc, Viktor (Inventor); Brock, Matthew W (Inventor)

    2013-01-01

    Method and system for rapid and accurate determination of each of a sequence of unknown polymer components, such as nucleic acid components. A self-assembling monolayer of a selected substance is optionally provided on an interior surface of a pipette tip, and the interior surface is immersed in a selected liquid. A selected electrical field is impressed in a longitudinal direction, or in a transverse direction, in the tip region, a polymer sequence is passed through the tip region, and a change in an electrical current signal is measured as each polymer component passes through the tip region. Each of the measured changes in electrical current signals is compared with a database of reference electrical change signals, with each reference signal corresponding to an identified polymer component, to identify the unknown polymer component with a reference polymer component. The nanopore preferably has a pore inner diameter of no more than about 40 nm and is prepared by heating and pulling a very small section of a glass tubing.

  9. The advantages of SMRT sequencing

    OpenAIRE

    Roberts, Richard J; Carneiro, Mauricio O; Schatz, Michael C

    2013-01-01

    Of the current next-generation sequencing technologies, SMRT sequencing is sometimes overlooked. However, attributes such as long reads, modified base detection and high accuracy make SMRT a useful technology and an ideal approach to the complete sequencing of small genomes.

  10. Putting instruction sequences into effect

    NARCIS (Netherlands)

    Bergstra, J.A.

    2011-01-01

    An attempt is made to define the concept of execution of an instruction sequence. It is found to be a special case of directly putting into effect of an instruction sequence. Directly putting into effect of an instruction sequences comprises interpretation as well as execution. Directly putting into

  11. Region segmentation along image sequence

    International Nuclear Information System (INIS)

    Monchal, L.; Aubry, P.

    1995-01-01

    A method to extract regions in sequence of images is proposed. Regions are not matched from one image to the following one. The result of a region segmentation is used as an initialization to segment the following and image to track the region along the sequence. The image sequence is exploited as a spatio-temporal event. (authors). 12 refs., 8 figs

  12. Log-balanced combinatorial sequences

    Directory of Open Access Journals (Sweden)

    Tomislav Došlic

    2005-01-01

    Full Text Available We consider log-convex sequences that satisfy an additional constraint imposed on their rate of growth. We call such sequences log-balanced. It is shown that all such sequences satisfy a pair of double inequalities. Sufficient conditions for log-balancedness are given for the case when the sequence satisfies a two- (or more- term linear recurrence. It is shown that many combinatorially interesting sequences belong to this class, and, as a consequence, that the above-mentioned double inequalities are valid for all of them.

  13. New MR pulse sequence

    International Nuclear Information System (INIS)

    Harms, S.E.; Flamig, D.P.; Griffey, R.H.

    1990-01-01

    This paper describes a method for fat suppression for three-dimensional MR imaging. The FATS (fat-suppressed acquisition with echo time shortened) sequence employs a pair of opposing adiabatic half-passage RF pulses tuned on fat resonance. The imaging parameters are as follows: TR, 20 msec; TE, 21.7-3.2 msec; 1,024 x 128 x 128 acquired matrix; imaging time, approximately 11 minutes. A series of 54 examinations were performed. Excellent fat suppression with water excitation is achieved in all cases. The orbital images demonstrate superior resolution of small orbital lesions. The high signal-to-noise ratio (SNR) in cranial studies demonstrates excellent petrous bone and internal auditory canal anatomy

  14. Quantum-Sequencing: Fast electronic single DNA molecule sequencing

    Science.gov (United States)

    Casamada Ribot, Josep; Chatterjee, Anushree; Nagpal, Prashant

    2014-03-01

    A major goal of third-generation sequencing technologies is to develop a fast, reliable, enzyme-free, high-throughput and cost-effective, single-molecule sequencing method. Here, we present the first demonstration of unique ``electronic fingerprint'' of all nucleotides (A, G, T, C), with single-molecule DNA sequencing, using Quantum-tunneling Sequencing (Q-Seq) at room temperature. We show that the electronic state of the nucleobases shift depending on the pH, with most distinct states identified at acidic pH. We also demonstrate identification of single nucleotide modifications (methylation here). Using these unique electronic fingerprints (or tunneling data), we report a partial sequence of beta lactamase (bla) gene, which encodes resistance to beta-lactam antibiotics, with over 95% success rate. These results highlight the potential of Q-Seq as a robust technique for next-generation sequencing.

  15. Universal sequence map (USM of arbitrary discrete sequences

    Directory of Open Access Journals (Sweden)

    Almeida Jonas S

    2002-02-01

    Full Text Available Abstract Background For over a decade the idea of representing biological sequences in a continuous coordinate space has maintained its appeal but not been fully realized. The basic idea is that any sequence of symbols may define trajectories in the continuous space conserving all its statistical properties. Ideally, such a representation would allow scale independent sequence analysis – without the context of fixed memory length. A simple example would consist on being able to infer the homology between two sequences solely by comparing the coordinates of any two homologous units. Results We have successfully identified such an iterative function for bijective mappingψ of discrete sequences into objects of continuous state space that enable scale-independent sequence analysis. The technique, named Universal Sequence Mapping (USM, is applicable to sequences with an arbitrary length and arbitrary number of unique units and generates a representation where map distance estimates sequence similarity. The novel USM procedure is based on earlier work by these and other authors on the properties of Chaos Game Representation (CGR. The latter enables the representation of 4 unit type sequences (like DNA as an order free Markov Chain transition table. The properties of USM are illustrated with test data and can be verified for other data by using the accompanying web-based tool:http://bioinformatics.musc.edu/~jonas/usm/. Conclusions USM is shown to enable a statistical mechanics approach to sequence analysis. The scale independent representation frees sequence analysis from the need to assume a memory length in the investigation of syntactic rules.

  16. Short sequence motifs, overrepresented in mammalian conservednon-coding sequences

    Energy Technology Data Exchange (ETDEWEB)

    Minovitsky, Simon; Stegmaier, Philip; Kel, Alexander; Kondrashov,Alexey S.; Dubchak, Inna

    2007-02-21

    Background: A substantial fraction of non-coding DNAsequences of multicellular eukaryotes is under selective constraint. Inparticular, ~;5 percent of the human genome consists of conservednon-coding sequences (CNSs). CNSs differ from other genomic sequences intheir nucleotide composition and must play important functional roles,which mostly remain obscure.Results: We investigated relative abundancesof short sequence motifs in all human CNSs present in the human/mousewhole-genome alignments vs. three background sets of sequences: (i)weakly conserved or unconserved non-coding sequences (non-CNSs); (ii)near-promoter sequences (located between nucleotides -500 and -1500,relative to a start of transcription); and (iii) random sequences withthe same nucleotide composition as that of CNSs. When compared tonon-CNSs and near-promoter sequences, CNSs possess an excess of AT-richmotifs, often containing runs of identical nucleotides. In contrast, whencompared to random sequences, CNSs contain an excess of GC-rich motifswhich, however, lack CpG dinucleotides. Thus, abundance of short sequencemotifs in human CNSs, taken as a whole, is mostly determined by theiroverall compositional properties and not by overrepresentation of anyspecific short motifs. These properties are: (i) high AT-content of CNSs,(ii) a tendency, probably due to context-dependent mutation, of A's andT's to clump, (iii) presence of short GC-rich regions, and (iv) avoidanceof CpG contexts, due to their hypermutability. Only a small number ofshort motifs, overrepresented in all human CNSs are similar to bindingsites of transcription factors from the FOX family.Conclusion: Human CNSsas a whole appear to be too broad a class of sequences to possess strongfootprints of any short sequence-specific functions. Such footprintsshould be studied at the level of functional subclasses of CNSs, such asthose which flank genes with a particular pattern of expression. Overallproperties of CNSs are affected by

  17. Genomic sequencing in clinical trials

    OpenAIRE

    Mestan, Karen K; Ilkhanoff, Leonard; Mouli, Samdeep; Lin, Simon

    2011-01-01

    Abstract Human genome sequencing is the process by which the exact order of nucleic acid base pairs in the 24 human chromosomes is determined. Since the completion of the Human Genome Project in 2003, genomic sequencing is rapidly becoming a major part of our translational research efforts to understand and improve human health and disease. This article reviews the current and future directions of clinical research with respect to genomic sequencing, a technology that is just beginning to fin...

  18. Biosensors for DNA sequence detection

    Science.gov (United States)

    Vercoutere, Wenonah; Akeson, Mark

    2002-01-01

    DNA biosensors are being developed as alternatives to conventional DNA microarrays. These devices couple signal transduction directly to sequence recognition. Some of the most sensitive and functional technologies use fibre optics or electrochemical sensors in combination with DNA hybridization. In a shift from sequence recognition by hybridization, two emerging single-molecule techniques read sequence composition using zero-mode waveguides or electrical impedance in nanoscale pores.

  19. ABS: Sequence alignment by scanning

    KAUST Repository

    Bonny, Mohamed Talal

    2011-08-01

    Sequence alignment is an essential tool in almost any computational biology research. It processes large database sequences and considered to be high consumers of computation time. Heuristic algorithms are used to get approximate but fast results. We introduce fast alignment algorithm, called Alignment By Scanning (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the well-known alignment algorithms, the FASTA (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 76% enhancement in alignment score when it is compared with the FASTA Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  20. ABS: Sequence alignment by scanning

    KAUST Repository

    Bonny, Mohamed Talal; Salama, Khaled N.

    2011-01-01

    Sequence alignment is an essential tool in almost any computational biology research. It processes large database sequences and considered to be high consumers of computation time. Heuristic algorithms are used to get approximate but fast results. We introduce fast alignment algorithm, called Alignment By Scanning (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the well-known alignment algorithms, the FASTA (which is heuristic) and the 'Needleman-Wunsch' (which is optimal). The proposed algorithm achieves up to 76% enhancement in alignment score when it is compared with the FASTA Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  1. Fast global sequence alignment technique

    KAUST Repository

    Bonny, Mohamed Talal

    2011-11-01

    Bioinformatics database is growing exponentially in size. Processing these large amount of data may take hours of time even if super computers are used. One of the most important processing tool in Bioinformatics is sequence alignment. We introduce fast alignment algorithm, called \\'Alignment By Scanning\\' (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the wellknown sequence alignment algorithms, the \\'GAP\\' (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 51% enhancement in alignment score when it is compared with the GAP Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  2. Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

    DEFF Research Database (Denmark)

    Larsen, Mette Voldby; Cosentino, Salvatore; Rasmussen, Simon

    2012-01-01

    Accurate strain identification is essential for anyone working with bacteria. For many species, multilocus sequence typing (MLST) is considered the "gold standard" of typing, but it is traditionally performed in an expensive and time-consuming manner. As the costs of whole-genome sequencing (WGS...

  3. Dog Y chromosomal DNA sequence: identification, sequencing and SNP discovery

    Directory of Open Access Journals (Sweden)

    Kirkness Ewen

    2006-10-01

    Full Text Available Abstract Background Population genetic studies of dogs have so far mainly been based on analysis of mitochondrial DNA, describing only the history of female dogs. To get a picture of the male history, as well as a second independent marker, there is a need for studies of biallelic Y-chromosome polymorphisms. However, there are no biallelic polymorphisms reported, and only 3200 bp of non-repetitive dog Y-chromosome sequence deposited in GenBank, necessitating the identification of dog Y chromosome sequence and the search for polymorphisms therein. The genome has been only partially sequenced for one male dog, disallowing mapping of the sequence into specific chromosomes. However, by comparing the male genome sequence to the complete female dog genome sequence, candidate Y-chromosome sequence may be identified by exclusion. Results The male dog genome sequence was analysed by Blast search against the human genome to identify sequences with a best match to the human Y chromosome and to the female dog genome to identify those absent in the female genome. Candidate sequences were then tested for male specificity by PCR of five male and five female dogs. 32 sequences from the male genome, with a total length of 24 kbp, were identified as male specific, based on a match to the human Y chromosome, absence in the female dog genome and male specific PCR results. 14437 bp were then sequenced for 10 male dogs originating from Europe, Southwest Asia, Siberia, East Asia, Africa and America. Nine haplotypes were found, which were defined by 14 substitutions. The genetic distance between the haplotypes indicates that they originate from at least five wolf haplotypes. There was no obvious trend in the geographic distribution of the haplotypes. Conclusion We have identified 24159 bp of dog Y-chromosome sequence to be used for population genetic studies. We sequenced 14437 bp in a worldwide collection of dogs, identifying 14 SNPs for future SNP analyses, and

  4. SVX Sequencer Board

    International Nuclear Information System (INIS)

    Utes, M.

    1997-01-01

    The SVX Sequencer boards are 9U by 280mm circuit boards that reside in slots 2 through 21 of each of eight Eurocard crates in the D0 Detector Platform. The basic purpose is to control the SVX chips for data acquisition and when a trigger occurs, to gather the SVX data and relay the data to the VRB boards in the Movable Counting House. Functions and features are as follows: (1) Initialization of eight SVX chip strings using the MIL-STD-1553 data bus; (2) Real time manipulation of the SVX control lines to effect data acquisition, digitization, and readout based on the NRZ/Clock signals from the Controller; (3) Conversion of 8-bit electrical SVX readout data to an optical signal operating at 1.062 Gbit/sec, sent to the VRB. Eight HDIs will be serviced per board; (4) Built-in logic analyzer which can record the most important control and data lines during a data acquisition cycle and put this recorded information onto the 1553 bus; (5) Identification header and end of data trailer tacked onto data stream; (6) 1553 register which can read the current values of the control and data lines; (7) 1553 register which can test the optical link; (8) 1553 registers for crossing pulse width, calibration pulse voltage, and calibration pipeline select; (9) 1553 register for reading the optical drivers status link; (10) 1553 register for power control of SVX chips and ignoring bad SVX strings; (11) Front panel displays and LEDs show the board status at a glance; (12) In-system programmable EPLDs are programmed via 1553 or Altera's 'Bitblaster'; (13) Automatic readout abort after 45us; (14) Supplies BUSY signal back to Trigger Framework; (15) Supports a heartbeat system to prevent excessive SVX current draw; and (16) Supports a SVX power trip feature if heartbeat failure occurs.

  5. Sequence Algebra, Sequence Decision Diagrams and Dynamic Fault Trees

    International Nuclear Information System (INIS)

    Rauzy, Antoine B.

    2011-01-01

    A large attention has been focused on the Dynamic Fault Trees in the past few years. By adding new gates to static (regular) Fault Trees, Dynamic Fault Trees aim to take into account dependencies among events. Merle et al. proposed recently an algebraic framework to give a formal interpretation to these gates. In this article, we extend Merle et al.'s work by adopting a slightly different perspective. We introduce Sequence Algebras that can be seen as Algebras of Basic Events, representing failures of non-repairable components. We show how to interpret Dynamic Fault Trees within this framework. Finally, we propose a new data structure to encode sets of sequences of Basic Events: Sequence Decision Diagrams. Sequence Decision Diagrams are very much inspired from Minato's Zero-Suppressed Binary Decision Diagrams. We show that all operations of Sequence Algebras can be performed on this data structure.

  6. Chameleon sequences in neurodegenerative diseases

    International Nuclear Information System (INIS)

    Bahramali, Golnaz; Goliaei, Bahram; Minuchehr, Zarrin; Salari, Ali

    2016-01-01

    Chameleon sequences can adopt either alpha helix sheet or a coil conformation. Defining chameleon sequences in PDB (Protein Data Bank) may yield to an insight on defining peptides and proteins responsible in neurodegeneration. In this research, we benefitted from the large PDB and performed a sequence analysis on Chameleons, where we developed an algorithm to extract peptide segments with identical sequences, but different structures. In order to find new chameleon sequences, we extracted a set of 8315 non-redundant protein sequences from the PDB with an identity less than 25%. Our data was classified to “helix to strand (HE)”, “helix to coil (HC)” and “strand to coil (CE)” alterations. We also analyzed the occurrence of singlet and doublet amino acids and the solvent accessibility in the chameleon sequences; we then sorted out the proteins with the most number of chameleon sequences and named them Chameleon Flexible Proteins (CFPs) in our dataset. Our data revealed that Gly, Val, Ile, Tyr and Phe, are the major amino acids in Chameleons. We also found that there are proteins such as Insulin Degrading Enzyme IDE and GTP-binding nuclear protein Ran (RAN) with the most number of chameleons (640 and 405 respectively). These proteins have known roles in neurodegenerative diseases. Therefore it can be inferred that other CFP's can serve as key proteins in neurodegeneration, and a study on them can shed light on curing and preventing neurodegenerative diseases.

  7. Direct, rapid RNA sequence analysis

    International Nuclear Information System (INIS)

    Peattie, D.A.

    1987-01-01

    The original methods of RNA sequence analysis were based on enzymatic production and chromatographic separation of overlapping oligonucleotide fragments from within an RNA molecule followed by identification of the mononucleotides comprising the oligomer. Over the past decade the field of nucleic acid sequencing has changed dramatically, however, and RNA molecules now can be sequenced in a variety of more streamlined fashions. Most of the more recent advances in RNA sequencing have involved one-dimensional electrophoretic separation of 32 P-end-labeled oligoribonucleotides on polyacrylamide gels. In this chapter the author discusses two of these methods for determining the nucleotide sequences of RNA molecules rapidly: the chemical method and the enzymatic method. Both methods are direct and degradative, i.e., they rely on fragmatic and chemical approaches should be utilized. The single-strand-specific ribonucleases (A, T 1 , T 2 , and S 1 ) provide an efficient means to locate double-helical regions rapidly, and the chemical reactions provide a means to determine the RNA sequence within these regions. In addition, the chemical reactions allow one to assign interactions to specific atoms and to distinguish secondary interactions from tertiary ones. If the RNA molecule is small enough to be sequenced directly by the enzymatic or chemical method, the probing reactions can be done easily at the same time as sequencing reactions

  8. Chameleon sequences in neurodegenerative diseases.

    Science.gov (United States)

    Bahramali, Golnaz; Goliaei, Bahram; Minuchehr, Zarrin; Salari, Ali

    2016-03-25

    Chameleon sequences can adopt either alpha helix sheet or a coil conformation. Defining chameleon sequences in PDB (Protein Data Bank) may yield to an insight on defining peptides and proteins responsible in neurodegeneration. In this research, we benefitted from the large PDB and performed a sequence analysis on Chameleons, where we developed an algorithm to extract peptide segments with identical sequences, but different structures. In order to find new chameleon sequences, we extracted a set of 8315 non-redundant protein sequences from the PDB with an identity less than 25%. Our data was classified to "helix to strand (HE)", "helix to coil (HC)" and "strand to coil (CE)" alterations. We also analyzed the occurrence of singlet and doublet amino acids and the solvent accessibility in the chameleon sequences; we then sorted out the proteins with the most number of chameleon sequences and named them Chameleon Flexible Proteins (CFPs) in our dataset. Our data revealed that Gly, Val, Ile, Tyr and Phe, are the major amino acids in Chameleons. We also found that there are proteins such as Insulin Degrading Enzyme IDE and GTP-binding nuclear protein Ran (RAN) with the most number of chameleons (640 and 405 respectively). These proteins have known roles in neurodegenerative diseases. Therefore it can be inferred that other CFP's can serve as key proteins in neurodegeneration, and a study on them can shed light on curing and preventing neurodegenerative diseases. Copyright © 2016 Elsevier Inc. All rights reserved.

  9. Farey sequences and resistor networks

    Indian Academy of Sciences (India)

    Green's function, while the perturbation of a network is investigated in [3]. ... In Theorem 1 below, we employ the Farey sequence to establish a strict .... We next show that the Farey sequence method is applicable for circuits with n or fewer.

  10. DNA Sequencing by Capillary Electrophoresis

    Science.gov (United States)

    Karger, Barry L.; Guttman, Andras

    2009-01-01

    Sequencing of human and other genomes has been at the center of interest in the biomedical field over the past several decades and is now leading toward an era of personalized medicine. During this time, DNA sequencing methods have evolved from the labor intensive slab gel electrophoresis, through automated multicapillary electrophoresis systems using fluorophore labeling with multispectral imaging, to the “next generation” technologies of cyclic array, hybridization based, nanopore and single molecule sequencing. Deciphering the genetic blueprint and follow-up confirmatory sequencing of Homo sapiens and other genomes was only possible by the advent of modern sequencing technologies that was a result of step by step advances with a contribution of academics, medical personnel and instrument companies. While next generation sequencing is moving ahead at break-neck speed, the multicapillary electrophoretic systems played an essential role in the sequencing of the Human Genome, the foundation of the field of genomics. In this prospective, we wish to overview the role of capillary electrophoresis in DNA sequencing based in part of several of our articles in this journal. PMID:19517496

  11. Graphene nanodevices for DNA sequencing

    NARCIS (Netherlands)

    Heerema, S.J.; Dekker, C.

    2016-01-01

    Fast, cheap, and reliable DNA sequencing could be one of the most disruptive innovations of this decade, as it will pave the way for personalized medicine. In pursuit of such technology, a variety of nanotechnology-based approaches have been explored and established, including sequencing with

  12. Chameleon sequences in neurodegenerative diseases

    Energy Technology Data Exchange (ETDEWEB)

    Bahramali, Golnaz [Institute of Biochemistry and Biophysics, University of Tehran, Tehran (Iran, Islamic Republic of); Goliaei, Bahram, E-mail: goliaei@ut.ac.ir [Institute of Biochemistry and Biophysics, University of Tehran, Tehran (Iran, Islamic Republic of); Minuchehr, Zarrin, E-mail: minuchehr@nigeb.ac.ir [Department of Systems Biotechnology, National Institute of Genetic Engineering and Biotechnology, (NIGEB), Tehran (Iran, Islamic Republic of); Salari, Ali [Department of Systems Biotechnology, National Institute of Genetic Engineering and Biotechnology, (NIGEB), Tehran (Iran, Islamic Republic of)

    2016-03-25

    Chameleon sequences can adopt either alpha helix sheet or a coil conformation. Defining chameleon sequences in PDB (Protein Data Bank) may yield to an insight on defining peptides and proteins responsible in neurodegeneration. In this research, we benefitted from the large PDB and performed a sequence analysis on Chameleons, where we developed an algorithm to extract peptide segments with identical sequences, but different structures. In order to find new chameleon sequences, we extracted a set of 8315 non-redundant protein sequences from the PDB with an identity less than 25%. Our data was classified to “helix to strand (HE)”, “helix to coil (HC)” and “strand to coil (CE)” alterations. We also analyzed the occurrence of singlet and doublet amino acids and the solvent accessibility in the chameleon sequences; we then sorted out the proteins with the most number of chameleon sequences and named them Chameleon Flexible Proteins (CFPs) in our dataset. Our data revealed that Gly, Val, Ile, Tyr and Phe, are the major amino acids in Chameleons. We also found that there are proteins such as Insulin Degrading Enzyme IDE and GTP-binding nuclear protein Ran (RAN) with the most number of chameleons (640 and 405 respectively). These proteins have known roles in neurodegenerative diseases. Therefore it can be inferred that other CFP's can serve as key proteins in neurodegeneration, and a study on them can shed light on curing and preventing neurodegenerative diseases.

  13. Commercial Art: Scope and Sequence.

    Science.gov (United States)

    Nashville - Davidson County Metropolitan Public Schools, TN.

    This scope and sequence guide, developed for a commercial art vocational education program, represents an initial step in the development of a systemwide articulated curriculum sequence for all vocational programs within the Metropolitan Nashville Public School System. It was developed as a result of needs expressed by teachers, parents, and the…

  14. Rapid Diagnostics of Onboard Sequences

    Science.gov (United States)

    Starbird, Thomas W.; Morris, John R.; Shams, Khawaja S.; Maimone, Mark W.

    2012-01-01

    Keeping track of sequences onboard a spacecraft is challenging. When reviewing Event Verification Records (EVRs) of sequence executions on the Mars Exploration Rover (MER), operators often found themselves wondering which version of a named sequence the EVR corresponded to. The lack of this information drastically impacts the operators diagnostic capabilities as well as their situational awareness with respect to the commands the spacecraft has executed, since the EVRs do not provide argument values or explanatory comments. Having this information immediately available can be instrumental in diagnosing critical events and can significantly enhance the overall safety of the spacecraft. This software provides auditing capability that can eliminate that uncertainty while diagnosing critical conditions. Furthermore, the Restful interface provides a simple way for sequencing tools to automatically retrieve binary compiled sequence SCMFs (Space Command Message Files) on demand. It also enables developers to change the underlying database, while maintaining the same interface to the existing applications. The logging capabilities are also beneficial to operators when they are trying to recall how they solved a similar problem many days ago: this software enables automatic recovery of SCMF and RML (Robot Markup Language) sequence files directly from the command EVRs, eliminating the need for people to find and validate the corresponding sequences. To address the lack of auditing capability for sequences onboard a spacecraft during earlier missions, extensive logging support was added on the Mars Science Laboratory (MSL) sequencing server. This server is responsible for generating all MSL binary SCMFs from RML input sequences. The sequencing server logs every SCMF it generates into a MySQL database, as well as the high-level RML file and dictionary name inputs used to create the SCMF. The SCMF is then indexed by a hash value that is automatically included in all command

  15. Accident sequence quantification with KIRAP

    International Nuclear Information System (INIS)

    Kim, Tae Un; Han, Sang Hoon; Kim, Kil You; Yang, Jun Eon; Jeong, Won Dae; Chang, Seung Cheol; Sung, Tae Yong; Kang, Dae Il; Park, Jin Hee; Lee, Yoon Hwan; Hwang, Mi Jeong.

    1997-01-01

    The tasks of probabilistic safety assessment(PSA) consists of the identification of initiating events, the construction of event tree for each initiating event, construction of fault trees for event tree logics, the analysis of reliability data and finally the accident sequence quantification. In the PSA, the accident sequence quantification is to calculate the core damage frequency, importance analysis and uncertainty analysis. Accident sequence quantification requires to understand the whole model of the PSA because it has to combine all event tree and fault tree models, and requires the excellent computer code because it takes long computation time. Advanced Research Group of Korea Atomic Energy Research Institute(KAERI) has developed PSA workstation KIRAP(Korea Integrated Reliability Analysis Code Package) for the PSA work. This report describes the procedures to perform accident sequence quantification, the method to use KIRAP's cut set generator, and method to perform the accident sequence quantification with KIRAP. (author). 6 refs

  16. Accident sequence quantification with KIRAP

    Energy Technology Data Exchange (ETDEWEB)

    Kim, Tae Un; Han, Sang Hoon; Kim, Kil You; Yang, Jun Eon; Jeong, Won Dae; Chang, Seung Cheol; Sung, Tae Yong; Kang, Dae Il; Park, Jin Hee; Lee, Yoon Hwan; Hwang, Mi Jeong

    1997-01-01

    The tasks of probabilistic safety assessment(PSA) consists of the identification of initiating events, the construction of event tree for each initiating event, construction of fault trees for event tree logics, the analysis of reliability data and finally the accident sequence quantification. In the PSA, the accident sequence quantification is to calculate the core damage frequency, importance analysis and uncertainty analysis. Accident sequence quantification requires to understand the whole model of the PSA because it has to combine all event tree and fault tree models, and requires the excellent computer code because it takes long computation time. Advanced Research Group of Korea Atomic Energy Research Institute(KAERI) has developed PSA workstation KIRAP(Korea Integrated Reliability Analysis Code Package) for the PSA work. This report describes the procedures to perform accident sequence quantification, the method to use KIRAP`s cut set generator, and method to perform the accident sequence quantification with KIRAP. (author). 6 refs.

  17. Repeated DNA sequences in fungi

    Energy Technology Data Exchange (ETDEWEB)

    Dutta, S K

    1974-11-01

    Several fungal species, representatives of all broad groups like basidiomycetes, ascomycetes and phycomycetes, were examined for the nature of repeated DNA sequences by DNA:DNA reassociation studies using hydroxyapatite chromatography. All of the fungal species tested contained 10 to 20 percent repeated DNA sequences. There are approximately 100 to 110 copies of repeated DNA sequences of approximately 4 x 10/sup 7/ daltons piece size of each. Repeated DNA sequence homoduplexes showed on average 5/sup 0/C difference of T/sub e/50 (temperature at which 50 percent duplexes dissociate) values from the corresponding homoduplexes of unfractionated whole DNA. It is suggested that a part of repetitive sequences in fungi constitutes mitochondrial DNA and a part of it constitutes nuclear DNA. (auth)

  18. [Complete genome sequencing and sequence analysis of BCG Tice].

    Science.gov (United States)

    Wang, Zhiming; Pan, Yuanlong; Wu, Jun; Zhu, Baoli

    2012-10-04

    The objective of this study is to obtain the complete genome sequence of Bacillus Calmette-Guerin Tice (BCG Tice), in order to provide more information about the molecular biology of BCG Tice and design more reasonable vaccines to prevent tuberculosis. We assembled the data from high-throughput sequencing with SOAPdenovo software, with many contigs and scaffolds obtained. There are many sequence gaps and physical gaps remained as a result of regional low coverage and low quality. We designed primers at the end of contigs and performed PCR amplification in order to link these contigs and scaffolds. With various enzymes to perform PCR amplification, adjustment of PCR reaction conditions, and combined with clone construction to sequence, all the gaps were finished. We obtained the complete genome sequence of BCG Tice and submitted it to GenBank of National Center for Biotechnology Information (NCBI). The genome of BCG Tice is 4334064 base pairs in length, with GC content 65.65%. The problems and strategies during the finishing step of BCG Tice sequencing are illuminated here, with the hope of affording some experience to those who are involved in the finishing step of genome sequencing. The microarray data were verified by our results.

  19. EGFR T790M mutation testing of non-small cell lung cancer tissue and blood samples artificially spiked with circulating cell-free tumor DNA: results of a round robin trial.

    Science.gov (United States)

    Fassunke, Jana; Ihle, Michaela Angelika; Lenze, Dido; Lehmann, Annika; Hummel, Michael; Vollbrecht, Claudia; Penzel, Roland; Volckmar, Anna-Lena; Stenzinger, Albrecht; Endris, Volker; Jung, Andreas; Lehmann, Ulrich; Zeugner, Silke; Baretton, Gustavo; Kreipe, Hans; Schirmacher, Peter; Kirchner, Thomas; Dietel, Manfred; Büttner, Reinhard; Merkelbach-Bruse, Sabine

    2017-10-01

    The European Commision (EC) recently approved osimertinib for the treatment of adult patients with locally advanced or metastatic non-small-cell lung cancer (NSCLC) harboring EGFR T790M mutations. Besides tissue-based testing, blood samples containing cell-free circulating tumor DNA (ctDNA) can be used to interrogate T790M status. Herein, we describe the conditions and results of a round robin trial (RRT) for T790M mutation testing in NSCLC tissue specimens and peripheral blood samples spiked with cell line DNA mimicking tumor-derived ctDNA. The underlying objectives of this two-staged external quality assessment (EQA) approach were (a) to evaluate the accuracy of T790M mutations testing across multiple centers and (b) to investigate if a liquid biopsy-based testing for T790M mutations in spiked blood samples is feasible in routine diagnostic. Based on a successfully completed internal phase I RRT, an open RRT for EGFR T790M mutation testing in tumor tissue and blood samples was initiated. In total, 48 pathology centers participated in the EQA. Of these, 47 (97.9%) centers submitted their analyses within the pre-defined time frame and 44 (tissue), respectively, 40 (plasma) successfully passed the test. The overall success rates in the RRT phase II were 91.7% (tissue) and 83.3% (blood), respectively. Thirty-eight out of 48 participants (79.2%) successfully passed both parts of the RRT. The RRT for blood-based EGFR testing initiated in Germany is, to the best of our knowledge, the first of his kind in Europe. In summary, our results demonstrate that blood-based genotyping for EGFR resistance mutations can be successfully integrated in routine molecular diagnostics complementing the array of molecular methods already available at pathology centers in Germany.

  20. Females increase reproductive investment in response to helper-mediated improvements in allo-feeding, nest survival, nestling provisioning and post-fledging survival in the Karoo scrub-robin Cercotrichas coryphaeus

    Science.gov (United States)

    Lloyd, P.; Andrew, Taylor W.; du Plessis, Morné A.; Martin, T.E.

    2009-01-01

    In many cooperatively-breeding species, the presence of one or more helpers improves the reproductive performance of the breeding pair receiving help. Helper contributions can take many different forms, including allo-feeding, offspring provisioning, and offspring guarding or defence. Yet, most studies have focussed on single forms of helper contribution, particularly offspring provisioning, and few have evaluated the relative importance of a broader range of helper contributions to group reproductive performance. We examined helper contributions to multiple components of breeding performance in the Karoo scrub-robin Cercotrichas coryphaeus, a facultative cooperative breeder. We also tested a prediction of increased female investment in reproduction when helpers improve conditions for rearing young. Helpers assisted the breeding male in allo-feeding the incubating female, increasing allo-feeding rates. Greater allo-feeding correlated with greater female nest attentiveness during incubation. Nest predation was substantially lower among pairs breeding with a helper, resulting in a 74% increase in the probability of nest survival. Helper contributions to offspring provisioning increased nestling feeding rates, resulting in a reduced incidence of nestling starvation and increased nestling mass. Nestling mass had a strong, positive effect on post-fledging survival. Controlling for female age and habitat effects, annual production of fledged young was 130% greater among pairs breeding with a helper, and was influenced most strongly by helper correlates with nest survival, despite important helper effects on offspring provisioning. Females breeding with a helper increased clutch size, supporting the prediction of increased female investment in reproduction in response to helper benefits. ?? 2009 J. Avian Biol.

  1. GROUPING WEB ACCESS SEQUENCES uSING SEQUENCE ALIGNMENT METHOD

    OpenAIRE

    BHUPENDRA S CHORDIA; KRISHNAKANT P ADHIYA

    2011-01-01

    In web usage mining grouping of web access sequences can be used to determine the behavior or intent of a set of users. Grouping websessions is how to measure the similarity between web sessions. There are many shortcomings in traditional measurement methods. The taskof grouping web sessions based on similarity and consists of maximizing the intra-group similarity while minimizing the inter-groupsimilarity is done using sequence alignment method. This paper introduces a new method to group we...

  2. LPTAU, Quasi Random Sequence Generator

    International Nuclear Information System (INIS)

    Sobol, Ilya M.

    1993-01-01

    1 - Description of program or function: LPTAU generates quasi random sequences. These are uniformly distributed sets of L=M N points in the N-dimensional unit cube: I N =[0,1]x...x[0,1]. These sequences are used as nodes for multidimensional integration; as searching points in global optimization; as trial points in multi-criteria decision making; as quasi-random points for quasi Monte Carlo algorithms. 2 - Method of solution: Uses LP-TAU sequence generation (see references). 3 - Restrictions on the complexity of the problem: The number of points that can be generated is L 30 . The dimension of the space cannot exceed 51

  3. Weak disorder in Fibonacci sequences

    Energy Technology Data Exchange (ETDEWEB)

    Ben-Naim, E [Theoretical Division and Center for Nonlinear Studies, Los Alamos National Laboratory, Los Alamos, NM 87545 (United States); Krapivsky, P L [Department of Physics and Center for Molecular Cybernetics, Boston University, Boston, MA 02215 (United States)

    2006-05-19

    We study how weak disorder affects the growth of the Fibonacci series. We introduce a family of stochastic sequences that grow by the normal Fibonacci recursion with probability 1 - {epsilon}, but follow a different recursion rule with a small probability {epsilon}. We focus on the weak disorder limit and obtain the Lyapunov exponent that characterizes the typical growth of the sequence elements, using perturbation theory. The limiting distribution for the ratio of consecutive sequence elements is obtained as well. A number of variations to the basic Fibonacci recursion including shift, doubling and copying are considered. (letter to the editor)

  4. Pathogenesis-related proteins in Brazilian wheat genotypes: protein induction and partial gene sequencing Proteínas relacionadas à patogênese em genótipos brasileiros de trigo: indução e seqüenciamento parcial

    Directory of Open Access Journals (Sweden)

    Loreta Brandão de Freitas

    2003-06-01

    Full Text Available Leaves from 14 Brazilian genotypes of Triticum aestivum L. were treated with salicylic acid to induce pathogenesis-related (PR proteins. Inter and intracellular extracts were then obtained and investigated through polyacrilamide gel electrophoresis. Seven bands were observed. Material related to two of them (of 40 and 24 kDa occurred in intracellular spaces only. DNA from these same genotypes was then amplified through PCR using primers developed from three sequences encoding PR proteins, and compared with previously described sequences. The fragments presented homologies to PR groups 1, 3 (chitinases, and 5 (thaumatin-like. The PR3-like sequence also showed a site characteristic of PRs induced by ethylene and a portion without homology with previous sequences. No variation among genotypes were observed, either for protein extracts or DNA sequences.Folhas de 14 genótipos brasileiros de Triticum aestivum L. foram tratadas com ácido salicílico para a indução de proteínas relacionadas à patogênese (PR. Extratos inter e intracelulares foram assim obtidos e estudados através de eletroforese em gel de poliacrilamida. Sete bandas foram observadas, sendo que o material referente a duas delas (de 40 e 24 kDa foi detectado somente nos espaços intracelulares. O DNA desses mesmos genótipos foi então amplificado através de PCR, usando iniciadores desenvolvidos a partir de três seqüências que codificam proteínas PR, e comparados com seqüências previamente descritas. Eles apresentaram homologia com os grupos PR 1, PR 3 (quitinases e PR 5 (semelhante à taumatina, sendo que a seqüência do grupo PR 3 apresentou também um sítio característico de PRs induzidas pelo etileno e uma porção sem homologia com seqüências prévias. Não foi observada qualquer variação entre genótipos, seja nos extratos protéicos ou nas seqüências de DNA.

  5. Sequence analysis of Leukemia DNA

    Science.gov (United States)

    Nacong, Nasria; Lusiyanti, Desy; Irawan, Muhammad. Isa

    2018-03-01

    Cancer is a very deadly disease, one of which is leukemia disease or better known as blood cancer. The cancer cell can be detected by taking DNA in laboratory test. This study focused on local alignment of leukemia and non leukemia data resulting from NCBI in the form of DNA sequences by using Smith-Waterman algorithm. SmithWaterman algorithm was invented by TF Smith and MS Waterman in 1981. These algorithms try to find as much as possible similarity of a pair of sequences, by giving a negative value to the unequal base pair (mismatch), and positive values on the same base pair (match). So that will obtain the maximum positive value as the end of the alignment, and the minimum value as the initial alignment. This study will use sequences of leukemia and 3 sequences of non leukemia.

  6. VINTE ANOS DA LEI ROBIN HOOD: UM BALANÇO DA PROTEÇÃO DO PATRIMÔNIO CULTURAL EM MINAS GERAIS (Dossiê: Gestão, Educação e Patrimônio Cultural

    Directory of Open Access Journals (Sweden)

    Helaine Nolasco Queiroz

    2015-06-01

    Full Text Available Resumo: O presente texto busca discutir o impacto causado na preservação do patrimônio cultural mineiro pela lei Robin Hood ou Lei do ICMS que, em 2015, completa vinte anos de vigência. Ele partiu das reflexões apresentadas no XIX Simpósio Regional da ANPUH, realizado em Juiz de Fora em 2014, cujo tema foi Profissão historiador: formação e mercado de trabalho, e mostrou-se digno de maior divulgação e publicaçao pela atualidade e relevância do tema. O objetivo é conjecturar sobre as mudanças trazidas pela lei na preservação do patrimônio de Minas Gerais tanto no órgão fiscalizador da preservação no estado quanto nos municípios que aderiram à lei e, ainda, na atuação profissional dos que se dedicam à área. Palavras-chave: Patrimônio cultural, ICMS cultural, Lei Robin Hood, Minas Gerais, IEPHA/MG   Abstract: This text intends to discuss the impact caused in the Cultural Heritage of Minas Gerais (Brazil by the Robin Wood Law, or Low of the ICMS, that completes 20 years of existence in 2015. The idea received an explanation in the XIX Regional Simposion of ANPUH that took place in Juiz de Fora (Minas Gerais, Brazil in 2014. The theme of the simposium was The profession of historian: superior education and work marketing and it showed the actuality and the relevance of deeper discusstions about the subject. The purpose of the article is to reflect about the changes brought by the law in the cultural heritage preservation in Minas Gerais, in the organ that inspects the aplication of the law, in the cities that gain the ressourcers of the law and in the actuation of the professionals of the area.Keywords: Cultural Heritage, ICMS Law, Robin Hood Law, Minas Gerais (Brazil, IEPHARecebido em: 20/05/2015 – Aceito em 23/06/2015

  7. Integrated sequence analysis. Final report

    International Nuclear Information System (INIS)

    Andersson, K.; Pyy, P.

    1998-02-01

    The NKS/RAK subprojet 3 'integrated sequence analysis' (ISA) was formulated with the overall objective to develop and to test integrated methodologies in order to evaluate event sequences with significant human action contribution. The term 'methodology' denotes not only technical tools but also methods for integration of different scientific disciplines. In this report, we first discuss the background of ISA and the surveys made to map methods in different application fields, such as man machine system simulation software, human reliability analysis (HRA) and expert judgement. Specific event sequences were, after the surveys, selected for application and testing of a number of ISA methods. The event sequences discussed in the report were cold overpressure of BWR, shutdown LOCA of BWR, steam generator tube rupture of a PWR and BWR disturbed signal view in the control room after an external event. Different teams analysed these sequences by using different ISA and HRA methods. Two kinds of results were obtained from the ISA project: sequence specific and more general findings. The sequence specific results are discussed together with each sequence description. The general lessons are discussed under a separate chapter by using comparisons of different case studies. These lessons include areas ranging from plant safety management (design, procedures, instrumentation, operations, maintenance and safety practices) to methodological findings (ISA methodology, PSA,HRA, physical analyses, behavioural analyses and uncertainty assessment). Finally follows a discussion about the project and conclusions are presented. An interdisciplinary study of complex phenomena is a natural way to produce valuable and innovative results. This project came up with structured ways to perform ISA and managed to apply the in practice. The project also highlighted some areas where more work is needed. In the HRA work, development is required for the use of simulators and expert judgement as

  8. Optimization of sequence alignment for simple sequence repeat regions

    Directory of Open Access Journals (Sweden)

    Ogbonnaya Francis C

    2011-07-01

    Full Text Available Abstract Background Microsatellites, or simple sequence repeats (SSRs, are tandemly repeated DNA sequences, including tandem copies of specific sequences no longer than six bases, that are distributed in the genome. SSR has been used as a molecular marker because it is easy to detect and is used in a range of applications, including genetic diversity, genome mapping, and marker assisted selection. It is also very mutable because of slipping in the DNA polymerase during DNA replication. This unique mutation increases the insertion/deletion (INDELs mutation frequency to a high ratio - more than other types of molecular markers such as single nucleotide polymorphism (SNPs. SNPs are more frequent than INDELs. Therefore, all designed algorithms for sequence alignment fit the vast majority of the genomic sequence without considering microsatellite regions, as unique sequences that require special consideration. The old algorithm is limited in its application because there are many overlaps between different repeat units which result in false evolutionary relationships. Findings To overcome the limitation of the aligning algorithm when dealing with SSR loci, a new algorithm was developed using PERL script with a Tk graphical interface. This program is based on aligning sequences after determining the repeated units first, and the last SSR nucleotides positions. This results in a shifting process according to the inserted repeated unit type. When studying the phylogenic relations before and after applying the new algorithm, many differences in the trees were obtained by increasing the SSR length and complexity. However, less distance between different linage had been observed after applying the new algorithm. Conclusions The new algorithm produces better estimates for aligning SSR loci because it reflects more reliable evolutionary relations between different linages. It reduces overlapping during SSR alignment, which results in a more realistic

  9. ADDRESS SEQUENCES FOR MULTI RUN RAM TESTING

    Directory of Open Access Journals (Sweden)

    V. N. Yarmolik

    2014-01-01

    Full Text Available A universal approach for generation of address sequences with specified properties is proposed and analyzed. A modified version of the Antonov and Saleev algorithm for Sobol sequences genera-tion is chosen as a mathematical description of the proposed method. Within the framework of the proposed universal approach, the Sobol sequences form a subset of the address sequences. Other sub-sets are also formed, which are Gray sequences, anti-Gray sequences, counter sequences and sequenc-es with specified properties.

  10. Fast and secure retrieval of DNA sequences

    NARCIS (Netherlands)

    2014-01-01

    Sequence models are retrieved from a sequences index. The sequence models model DNA or RNA sequences stored in a database, and each comprises a finite memory tree source model and parameters for the finite memory tree source model. One or more DNA or RNA sequences stored in the database are

  11. Decidability of uniform recurrence of morphic sequences

    OpenAIRE

    Durand , Fabien

    2012-01-01

    We prove that the uniform recurrence of morphic sequences is decidable. For this we show that the number of derived sequences of uniformly recurrent morphic sequences is bounded. As a corollary we obtain that uniformly recurrent morphic sequences are primitive substitutive sequences.

  12. Sequence Factorization with Multiple References.

    Directory of Open Access Journals (Sweden)

    Sebastian Wandelt

    Full Text Available The success of high-throughput sequencing has lead to an increasing number of projects which sequence large populations of a species. Storage and analysis of sequence data is a key challenge in these projects, because of the sheer size of the datasets. Compression is one simple technology to deal with this challenge. Referential factorization and compression schemes, which store only the differences between input sequence and a reference sequence, gained lots of interest in this field. Highly-similar sequences, e.g., Human genomes, can be compressed with a compression ratio of 1,000:1 and more, up to two orders of magnitude better than with standard compression techniques. Recently, it was shown that the compression against multiple references from the same species can boost the compression ratio up to 4,000:1. However, a detailed analysis of using multiple references is lacking, e.g., for main memory consumption and optimality. In this paper, we describe one key technique for the referential compression against multiple references: The factorization of sequences. Based on the notion of an optimal factorization, we propose optimization heuristics and identify parameter settings which greatly influence 1 the size of the factorization, 2 the time for factorization, and 3 the required amount of main memory. We evaluate a total of 30 setups with a varying number of references on data from three different species. Our results show a wide range of factorization sizes (optimal to an overhead of up to 300%, factorization speed (0.01 MB/s to more than 600 MB/s, and main memory usage (few dozen MB to dozens of GB. Based on our evaluation, we identify the best configurations for common use cases. Our evaluation shows that multi-reference factorization is much better than single-reference factorization.

  13. Analysis of Pteridium ribosomal RNA sequences by rapid direct sequencing.

    Science.gov (United States)

    Tan, M K

    1991-08-01

    A total of 864 bases from 5 regions interspersed in the 18S and 26S rRNA molecules from various clones of Pteridium covering the general geographical distribution of the genus was analysed using a rapid rRNA sequencing technique. No base difference has been detected amongst the three major lineages, two of which apparently separated before the breakup of the ancient supercontinent, Pangaea. These regions of the rRNA sequences have thus been conserved for at least 160 million years and are here compared with other eukaryotic, especially plant rRNAs.

  14. Genome Sequences of Oryza Species

    KAUST Repository

    Kumagai, Masahiko; Tanaka, Tsuyoshi; Ohyanagi, Hajime; Hsing, Yue-Ie C.; Itoh, Takeshi

    2018-01-01

    This chapter summarizes recent data obtained from genome sequencing, annotation projects, and studies on the genome diversity of Oryza sativa and related Oryza species. O. sativa, commonly known as Asian rice, is the first monocot species whose complete genome sequence was deciphered based on physical mapping by an international collaborative effort. This genome, along with its accurate and comprehensive annotation, has become an indispensable foundation for crop genomics and breeding. With the development of innovative sequencing technologies, genomic studies of O. sativa have dramatically increased; in particular, a large number of cultivars and wild accessions have been sequenced and compared with the reference rice genome. Since de novo genome sequencing has become cost-effective, the genome of African cultivated rice, O. glaberrima, has also been determined. Comparative genomic studies have highlighted the independent domestication processes of different rice species, but it also turned out that Asian and African rice share a common gene set that has experienced similar artificial selection. An international project aimed at constructing reference genomes and examining the genome diversity of wild Oryza species is currently underway, and the genomes of some species are publicly available. This project provides a platform for investigations such as the evolution, development, polyploidization, and improvement of crops. Studies on the genomic diversity of Oryza species, including wild species, should provide new insights to solve the problem of growing food demands in the face of rapid climatic changes.

  15. Genome Sequences of Oryza Species

    KAUST Repository

    Kumagai, Masahiko

    2018-02-14

    This chapter summarizes recent data obtained from genome sequencing, annotation projects, and studies on the genome diversity of Oryza sativa and related Oryza species. O. sativa, commonly known as Asian rice, is the first monocot species whose complete genome sequence was deciphered based on physical mapping by an international collaborative effort. This genome, along with its accurate and comprehensive annotation, has become an indispensable foundation for crop genomics and breeding. With the development of innovative sequencing technologies, genomic studies of O. sativa have dramatically increased; in particular, a large number of cultivars and wild accessions have been sequenced and compared with the reference rice genome. Since de novo genome sequencing has become cost-effective, the genome of African cultivated rice, O. glaberrima, has also been determined. Comparative genomic studies have highlighted the independent domestication processes of different rice species, but it also turned out that Asian and African rice share a common gene set that has experienced similar artificial selection. An international project aimed at constructing reference genomes and examining the genome diversity of wild Oryza species is currently underway, and the genomes of some species are publicly available. This project provides a platform for investigations such as the evolution, development, polyploidization, and improvement of crops. Studies on the genomic diversity of Oryza species, including wild species, should provide new insights to solve the problem of growing food demands in the face of rapid climatic changes.

  16. Transformed composite sequences for improved qubit addressing

    Science.gov (United States)

    Merrill, J. True; Doret, S. Charles; Vittorini, Grahame; Addison, J. P.; Brown, Kenneth R.

    2014-10-01

    Selective laser addressing of a single atom or atomic ion qubit can be improved using narrow-band composite pulse sequences. We describe a Lie-algebraic technique to generalize known narrow-band sequences and introduce sequences related by dilation and rotation of sequence generators. Our method improves known narrow-band sequences by decreasing both the pulse time and the residual error. Finally, we experimentally demonstrate these composite sequences using 40Ca+ ions trapped in a surface-electrode ion trap.

  17. Sequences, groups, and number theory

    CERN Document Server

    Rigo, Michel

    2018-01-01

    This collaborative book presents recent trends on the study of sequences, including combinatorics on words and symbolic dynamics, and new interdisciplinary links to group theory and number theory. Other chapters branch out from those areas into subfields of theoretical computer science, such as complexity theory and theory of automata. The book is built around four general themes: number theory and sequences, word combinatorics, normal numbers, and group theory. Those topics are rounded out by investigations into automatic and regular sequences, tilings and theory of computation, discrete dynamical systems, ergodic theory, numeration systems, automaton semigroups, and amenable groups.  This volume is intended for use by graduate students or research mathematicians, as well as computer scientists who are working in automata theory and formal language theory. With its organization around unified themes, it would also be appropriate as a supplemental text for graduate level courses.

  18. Explaining the harmonic sequence paradox.

    Science.gov (United States)

    Schmidt, Ulrich; Zimper, Alexander

    2012-05-01

    According to the harmonic sequence paradox, an expected utility decision maker's willingness to pay for a gamble whose expected payoffs evolve according to the harmonic series is finite if and only if his marginal utility of additional income becomes zero for rather low payoff levels. Since the assumption of zero marginal utility is implausible for finite payoff levels, expected utility theory - as well as its standard generalizations such as cumulative prospect theory - are apparently unable to explain a finite willingness to pay. This paper presents first an experimental study of the harmonic sequence paradox. Additionally, it demonstrates that the theoretical argument of the harmonic sequence paradox only applies to time-patient decision makers, whereas the paradox is easily avoided if time-impatience is introduced. ©2011 The British Psychological Society.

  19. Integrated sequence analysis. Final report

    Energy Technology Data Exchange (ETDEWEB)

    Andersson, K.; Pyy, P

    1998-02-01

    The NKS/RAK subprojet 3 `integrated sequence analysis` (ISA) was formulated with the overall objective to develop and to test integrated methodologies in order to evaluate event sequences with significant human action contribution. The term `methodology` denotes not only technical tools but also methods for integration of different scientific disciplines. In this report, we first discuss the background of ISA and the surveys made to map methods in different application fields, such as man machine system simulation software, human reliability analysis (HRA) and expert judgement. Specific event sequences were, after the surveys, selected for application and testing of a number of ISA methods. The event sequences discussed in the report were cold overpressure of BWR, shutdown LOCA of BWR, steam generator tube rupture of a PWR and BWR disturbed signal view in the control room after an external event. Different teams analysed these sequences by using different ISA and HRA methods. Two kinds of results were obtained from the ISA project: sequence specific and more general findings. The sequence specific results are discussed together with each sequence description. The general lessons are discussed under a separate chapter by using comparisons of different case studies. These lessons include areas ranging from plant safety management (design, procedures, instrumentation, operations, maintenance and safety practices) to methodological findings (ISA methodology, PSA,HRA, physical analyses, behavioural analyses and uncertainty assessment). Finally follows a discussion about the project and conclusions are presented. An interdisciplinary study of complex phenomena is a natural way to produce valuable and innovative results. This project came up with structured ways to perform ISA and managed to apply the in practice. The project also highlighted some areas where more work is needed. In the HRA work, development is required for the use of simulators and expert judgement as

  20. Matrix transformations and sequence spaces

    International Nuclear Information System (INIS)

    Nanda, S.

    1983-06-01

    In most cases the most general linear operator from one sequence space into another is actually given by an infinite matrix and therefore the theory of matrix transformations has always been of great interest in the study of sequence spaces. The study of general theory of matrix transformations was motivated by the special results in summability theory. This paper is a review article which gives almost all known results on matrix transformations. This also suggests a number of open problems for further study and will be very useful for research workers. (author)

  1. Green's theorem and Gorenstein sequences

    OpenAIRE

    Ahn, Jeaman; Migliore, Juan C.; Shin, Yong-Su

    2016-01-01

    We study consequences, for a standard graded algebra, of extremal behavior in Green's Hyperplane Restriction Theorem. First, we extend his Theorem 4 from the case of a plane curve to the case of a hypersurface in a linear space. Second, assuming a certain Lefschetz condition, we give a connection to extremal behavior in Macaulay's theorem. We apply these results to show that $(1,19,17,19,1)$ is not a Gorenstein sequence, and as a result we classify the sequences of the form $(1,a,a-2,a,1)$ th...

  2. Sequences in language and text

    CERN Document Server

    Mikros, George K

    2015-01-01

    The aim of this volume is to present the diverse but highly interesting area of the quantitative analysis of the sequence of various linguistic structures. The collected articles present a wide spectrum of quantitative analyses of linguistic syntagmatic structures and explore novel sequential linguistic entities. This volume will be interesting to all researchers studying linguistics using quantitative methods.

  3. Probabilistic studies of accident sequences

    International Nuclear Information System (INIS)

    Villemeur, A.; Berger, J.P.

    1986-01-01

    For several years, Electricite de France has carried out probabilistic assessment of accident sequences for nuclear power plants. In the framework of this program many methods were developed. As the interest in these studies was increasing and as adapted methods were developed, Electricite de France has undertaken a probabilistic safety assessment of a nuclear power plant [fr

  4. MRI sequences and their parameters

    International Nuclear Information System (INIS)

    Teissier, J.M.

    1993-01-01

    Listing basic sequences and their present variants makes a synthetic classification of the various acquisition modes possible. The knowledge of the advantages of each of them, as well as of their disadvantages and restraints, seems to be an essential prerequisite to an optimal utilization of each magnetic resonance imaging system. (author)

  5. Degree sequence in message transfer

    Science.gov (United States)

    Yamuna, M.

    2017-11-01

    Message encryption is always an issue in current communication scenario. Methods are being devised using various domains. Graphs satisfy numerous unique properties which can be used for message transfer. In this paper, I propose a message encryption method based on degree sequence of graphs.

  6. Fractals in DNA sequence analysis

    Institute of Scientific and Technical Information of China (English)

    Yu Zu-Guo(喻祖国); Vo Anh; Gong Zhi-Min(龚志民); Long Shun-Chao(龙顺潮)

    2002-01-01

    Fractal methods have been successfully used to study many problems in physics, mathematics, engineering, finance,and even in biology. There has been an increasing interest in unravelling the mysteries of DNA; for example, how can we distinguish coding and noncoding sequences, and the problems of classification and evolution relationship of organisms are key problems in bioinformatics. Although much research has been carried out by taking into consideration the long-range correlations in DNA sequences, and the global fractal dimension has been used in these works by other people, the models and methods are somewhat rough and the results are not satisfactory. In recent years, our group has introduced a time series model (statistical point of view) and a visual representation (geometrical point of view)to DNA sequence analysis. We have also used fractal dimension, correlation dimension, the Hurst exponent and the dimension spectrum (multifractal analysis) to discuss problems in this field. In this paper, we introduce these fractal models and methods and the results of DNA sequence analysis.

  7. On primes in Lucas sequences

    Czech Academy of Sciences Publication Activity Database

    Křížek, Michal; Somer, L.

    2015-01-01

    Roč. 53, č. 1 (2015), s. 2-23 ISSN 0015-0517 R&D Projects: GA ČR GA14-02067S Institutional support: RVO:67985840 Keywords : Lucas sequence * primes Subject RIV: BA - General Mathematics http://www.fq.math.ca/Abstracts/53-1/somer.pdf

  8. Is sequence awareness mandatory for perceptual sequence learning: An assessment using a pure perceptual sequence learning design.

    Science.gov (United States)

    Deroost, Natacha; Coomans, Daphné

    2018-02-01

    We examined the role of sequence awareness in a pure perceptual sequence learning design. Participants had to react to the target's colour that changed according to a perceptual sequence. By varying the mapping of the target's colour onto the response keys, motor responses changed randomly. The effect of sequence awareness on perceptual sequence learning was determined by manipulating the learning instructions (explicit versus implicit) and assessing the amount of sequence awareness after the experiment. In the explicit instruction condition (n = 15), participants were instructed to intentionally search for the colour sequence, whereas in the implicit instruction condition (n = 15), they were left uninformed about the sequenced nature of the task. Sequence awareness after the sequence learning task was tested by means of a questionnaire and the process-dissociation-procedure. The results showed that the instruction manipulation had no effect on the amount of perceptual sequence learning. Based on their report to have actively applied their sequence knowledge during the experiment, participants were subsequently regrouped in a sequence strategy group (n = 14, of which 4 participants from the implicit instruction condition and 10 participants from the explicit instruction condition) and a no-sequence strategy group (n = 16, of which 11 participants from the implicit instruction condition and 5 participants from the explicit instruction condition). Only participants of the sequence strategy group showed reliable perceptual sequence learning and sequence awareness. These results indicate that perceptual sequence learning depends upon the continuous employment of strategic cognitive control processes on sequence knowledge. Sequence awareness is suggested to be a necessary but not sufficient condition for perceptual learning to take place. Copyright © 2018 Elsevier B.V. All rights reserved.

  9. Teaching Task Sequencing via Verbal Mediation.

    Science.gov (United States)

    Rusch, Frank R.; And Others

    1987-01-01

    Verbal sequence training was used to teach a moderately mentally retarded woman to sequence job-related tasks. Learning to say the tasks in the proper sequence resulted in the employee performing her tasks in that sequence, and the employee was capable of mediating her own work behavior when scheduled changes occurred. (Author/JDD)

  10. Repdigits in k-Lucas sequences

    Indian Academy of Sciences (India)

    57(2) 2000 243-254) proved that 11 is the largest number with only one distinct digit (the so-called repdigit) in the sequence ( L n ( 2 ) ) n . In this paper, we address a similar problem in the family of -Lucas sequences. We also show that the -Lucas sequences have similar properties to those of -Fibonacci sequences ...

  11. Disease ecology: the silence of the robins

    DEFF Research Database (Denmark)

    Rahbek, Carsten

    2007-01-01

    A continent-wide analysis suggests that West Nile virus has severely affected bird populations associated with human habitats in North America. The declines parallel patterns of human disease caused by the virus.......A continent-wide analysis suggests that West Nile virus has severely affected bird populations associated with human habitats in North America. The declines parallel patterns of human disease caused by the virus....

  12. Send a wire to robin | News

    Science.gov (United States)

    Financial Officer Finance Section Office of the Chief Operating Officer Facilities Engineering Services Accelerator Division Accelerator Physics Center Office of the Chief Safety Officer Environment, Safety, Health and Quality Section Office of the Chief Project Officer Office of Project Support Services Office of

  13. Keskkonnakatastroofid : ASEM alustab tegevust / Robin Cook

    Index Scriptorium Estoniae

    Cook, Robin

    1998-01-01

    Aasia-Euroopa riikide tippkohtumisel kirjutavad ASEM-i liidrid alla programmile, mille kohaselt Euroopa riigid aitavad Kagu-Aasia riike toimetulekul keskkonnakatastroofidega. Aasia ja Euroopa ühise keskkonna tehnoloogiakeskuse loomine

  14. Round-Robin Streaming with Generations

    DEFF Research Database (Denmark)

    Li, Yao; Vingelmann, Peter; Pedersen, Morten Videbæk

    2012-01-01

    We consider three types of application layer coding for streaming over lossy links: random linear coding, systematic random linear coding, and structured coding. The file being streamed is divided into sub-blocks (generations). Code symbols are formed by combining data belonging to the same...

  15. Introduction Robin Melrose The French philosopher Jacques ...

    African Journals Online (AJOL)

    and presumably based on the present participle diff erant. (from differer), which in French means ... grammatical items that can fill the determiner slot). But ... or opposition which gives them form [ ... ] Here the ..... Here is a simple example from ...

  16. Nonparametric Inference for Periodic Sequences

    KAUST Repository

    Sun, Ying

    2012-02-01

    This article proposes a nonparametric method for estimating the period and values of a periodic sequence when the data are evenly spaced in time. The period is estimated by a "leave-out-one-cycle" version of cross-validation (CV) and complements the periodogram, a widely used tool for period estimation. The CV method is computationally simple and implicitly penalizes multiples of the smallest period, leading to a "virtually" consistent estimator of integer periods. This estimator is investigated both theoretically and by simulation.We also propose a nonparametric test of the null hypothesis that the data have constantmean against the alternative that the sequence of means is periodic. Finally, our methodology is demonstrated on three well-known time series: the sunspots and lynx trapping data, and the El Niño series of sea surface temperatures. © 2012 American Statistical Association and the American Society for Quality.

  17. Multi-qubit compensation sequences

    International Nuclear Information System (INIS)

    Tomita, Y; Merrill, J T; Brown, K R

    2010-01-01

    The Hamiltonian control of n qubits requires precision control of both the strength and timing of interactions. Compensation pulses relax the precision requirements by reducing unknown but systematic errors. Using composite pulse techniques designed for single qubits, we show that systematic errors for n-qubit systems can be corrected to arbitrary accuracy given either two non-commuting control Hamiltonians with identical systematic errors or one error-free control Hamiltonian. We also examine composite pulses in the context of quantum computers controlled by two-qubit interactions. For quantum computers based on the XY interaction, single-qubit composite pulse sequences naturally correct systematic errors. For quantum computers based on the Heisenberg or exchange interaction, the composite pulse sequences reduce the logical single-qubit gate errors but increase the errors for logical two-qubit gates.

  18. Cassini Mission Sequence Subsystem (MSS)

    Science.gov (United States)

    Alland, Robert

    2011-01-01

    This paper describes my work with the Cassini Mission Sequence Subsystem (MSS) team during the summer of 2011. It gives some background on the motivation for this project and describes the expected benefit to the Cassini program. It then introduces the two tasks that I worked on - an automatic system auditing tool and a series of corrections to the Cassini Sequence Generator (SEQ_GEN) - and the specific objectives these tasks were to accomplish. Next, it details the approach I took to meet these objectives and the results of this approach, followed by a discussion of how the outcome of the project compares with my initial expectations. The paper concludes with a summary of my experience working on this project, lists what the next steps are, and acknowledges the help of my Cassini colleagues.

  19. Sequence complexity and work extraction

    International Nuclear Information System (INIS)

    Merhav, Neri

    2015-01-01

    We consider a simplified version of a solvable model by Mandal and Jarzynski, which constructively demonstrates the interplay between work extraction and the increase of the Shannon entropy of an information reservoir which is in contact with a physical system. We extend Mandal and Jarzynski’s main findings in several directions: first, we allow sequences of correlated bits rather than just independent bits. Secondly, at least for the case of binary information, we show that, in fact, the Shannon entropy is only one measure of complexity of the information that must increase in order for work to be extracted. The extracted work can also be upper bounded in terms of the increase in other quantities that measure complexity, like the predictability of future bits from past ones. Third, we provide an extension to the case of non-binary information (i.e. a larger alphabet), and finally, we extend the scope to the case where the incoming bits (before the interaction) form an individual sequence, rather than a random one. In this case, the entropy before the interaction can be replaced by the Lempel–Ziv (LZ) complexity of the incoming sequence, a fact that gives rise to an entropic meaning of the LZ complexity, not only in information theory, but also in physics. (paper)

  20. Entropic fluctuations in DNA sequences

    Science.gov (United States)

    Thanos, Dimitrios; Li, Wentian; Provata, Astero

    2018-03-01

    The Local Shannon Entropy (LSE) in blocks is used as a complexity measure to study the information fluctuations along DNA sequences. The LSE of a DNA block maps the local base arrangement information to a single numerical value. It is shown that despite this reduction of information, LSE allows to extract meaningful information related to the detection of repetitive sequences in whole chromosomes and is useful in finding evolutionary differences between organisms. More specifically, large regions of tandem repeats, such as centromeres, can be detected based on their low LSE fluctuations along the chromosome. Furthermore, an empirical investigation of the appropriate block sizes is provided and the relationship of LSE properties with the structure of the underlying repetitive units is revealed by using both computational and mathematical methods. Sequence similarity between the genomic DNA of closely related species also leads to similar LSE values at the orthologous regions. As an application, the LSE covariance function is used to measure the evolutionary distance between several primate genomes.

  1. Formation of M-Like Intermediates in Proteorhodopsin in Alkali Solutions (pH ≥ ∼8.5) Where the Proton Release Occurs First in Contrast to the Sequence at Lower pH.

    Science.gov (United States)

    Tamogami, Jun; Sato, Keitaro; Kurokawa, Sukuna; Yamada, Takumi; Nara, Toshifumi; Demura, Makoto; Miyauchi, Seiji; Kikukawa, Takashi; Muneyuki, Eiro; Kamo, Naoki

    2016-02-23

    Proteorhodopsin (PR) is an outward light-driven proton pump observed in marine eubacteria. Despite many structural and functional similarities to bacteriorhodopsin (BR) in archaea, which also acts as an outward proton pump, the mechanism of the photoinduced proton release and uptake is different between two H(+)-pumps. In this study, we investigated the pH dependence of the photocycle and proton transfer in PR reconstituted with the phospholipid membrane under alkaline conditions. Under these conditions, as the medium pH increased, a blue-shifted photoproduct (defined as Ma), which is different from M, with a pKa of ca. 9.2 was produced. The sequence of the photoinduced proton uptake and release during the photocycle was inverted with the increase in pH. A pKa value of ca. 9.5 was estimated for this inversion and was in good agreement with the pKa value of the formation of Ma (∼ 9.2). In addition, we measured the photoelectric current generated by PRs attached to a thin polymer film at varying pH. Interestingly, increases in the medium pH evoked bidirectional photocurrents, which may imply a possible reversal of the direction of the proton movement at alkaline pH. On the basis of these findings, a putative photocycle and proton transfer scheme in PR under alkaline pH conditions was proposed.

  2. Method and apparatus for biological sequence comparison

    Science.gov (United States)

    Marr, T.G.; Chang, W.I.

    1997-12-23

    A method and apparatus are disclosed for comparing biological sequences from a known source of sequences, with a subject (query) sequence. The apparatus takes as input a set of target similarity levels (such as evolutionary distances in units of PAM), and finds all fragments of known sequences that are similar to the subject sequence at each target similarity level, and are long enough to be statistically significant. The invention device filters out fragments from the known sequences that are too short, or have a lower average similarity to the subject sequence than is required by each target similarity level. The subject sequence is then compared only to the remaining known sequences to find the best matches. The filtering member divides the subject sequence into overlapping blocks, each block being sufficiently large to contain a minimum-length alignment from a known sequence. For each block, the filter member compares the block with every possible short fragment in the known sequences and determines a best match for each comparison. The determined set of short fragment best matches for the block provide an upper threshold on alignment values. Regions of a certain length from the known sequences that have a mean alignment value upper threshold greater than a target unit score are concatenated to form a union. The current block is compared to the union and provides an indication of best local alignment with the subject sequence. 5 figs.

  3. Memory and learning with rapid audiovisual sequences

    Science.gov (United States)

    Keller, Arielle S.; Sekuler, Robert

    2015-01-01

    We examined short-term memory for sequences of visual stimuli embedded in varying multisensory contexts. In two experiments, subjects judged the structure of the visual sequences while disregarding concurrent, but task-irrelevant auditory sequences. Stimuli were eight-item sequences in which varying luminances and frequencies were presented concurrently and rapidly (at 8 Hz). Subjects judged whether the final four items in a visual sequence identically replicated the first four items. Luminances and frequencies in each sequence were either perceptually correlated (Congruent) or were unrelated to one another (Incongruent). Experiment 1 showed that, despite encouragement to ignore the auditory stream, subjects' categorization of visual sequences was strongly influenced by the accompanying auditory sequences. Moreover, this influence tracked the similarity between a stimulus's separate audio and visual sequences, demonstrating that task-irrelevant auditory sequences underwent a considerable degree of processing. Using a variant of Hebb's repetition design, Experiment 2 compared musically trained subjects and subjects who had little or no musical training on the same task as used in Experiment 1. Test sequences included some that intermittently and randomly recurred, which produced better performance than sequences that were generated anew for each trial. The auditory component of a recurring audiovisual sequence influenced musically trained subjects more than it did other subjects. This result demonstrates that stimulus-selective, task-irrelevant learning of sequences can occur even when such learning is an incidental by-product of the task being performed. PMID:26575193

  4. Memory and learning with rapid audiovisual sequences.

    Science.gov (United States)

    Keller, Arielle S; Sekuler, Robert

    2015-01-01

    We examined short-term memory for sequences of visual stimuli embedded in varying multisensory contexts. In two experiments, subjects judged the structure of the visual sequences while disregarding concurrent, but task-irrelevant auditory sequences. Stimuli were eight-item sequences in which varying luminances and frequencies were presented concurrently and rapidly (at 8 Hz). Subjects judged whether the final four items in a visual sequence identically replicated the first four items. Luminances and frequencies in each sequence were either perceptually correlated (Congruent) or were unrelated to one another (Incongruent). Experiment 1 showed that, despite encouragement to ignore the auditory stream, subjects' categorization of visual sequences was strongly influenced by the accompanying auditory sequences. Moreover, this influence tracked the similarity between a stimulus's separate audio and visual sequences, demonstrating that task-irrelevant auditory sequences underwent a considerable degree of processing. Using a variant of Hebb's repetition design, Experiment 2 compared musically trained subjects and subjects who had little or no musical training on the same task as used in Experiment 1. Test sequences included some that intermittently and randomly recurred, which produced better performance than sequences that were generated anew for each trial. The auditory component of a recurring audiovisual sequence influenced musically trained subjects more than it did other subjects. This result demonstrates that stimulus-selective, task-irrelevant learning of sequences can occur even when such learning is an incidental by-product of the task being performed.

  5. Multineuronal Spike Sequences Repeat with Millisecond Precision

    Directory of Open Access Journals (Sweden)

    Koki eMatsumoto

    2013-06-01

    Full Text Available Cortical microcircuits are nonrandomly wired by neurons. As a natural consequence, spikes emitted by microcircuits are also nonrandomly patterned in time and space. One of the prominent spike organizations is a repetition of fixed patterns of spike series across multiple neurons. However, several questions remain unsolved, including how precisely spike sequences repeat, how the sequences are spatially organized, how many neurons participate in sequences, and how different sequences are functionally linked. To address these questions, we monitored spontaneous spikes of hippocampal CA3 neurons ex vivo using a high-speed functional multineuron calcium imaging technique that allowed us to monitor spikes with millisecond resolution and to record the location of spiking and nonspiking neurons. Multineuronal spike sequences were overrepresented in spontaneous activity compared to the statistical chance level. Approximately 75% of neurons participated in at least one sequence during our observation period. The participants were sparsely dispersed and did not show specific spatial organization. The number of sequences relative to the chance level decreased when larger time frames were used to detect sequences. Thus, sequences were precise at the millisecond level. Sequences often shared common spikes with other sequences; parts of sequences were subsequently relayed by following sequences, generating complex chains of multiple sequences.

  6. Static multiplicities in heterogeneous azeotropic distillation sequences

    DEFF Research Database (Denmark)

    Esbjerg, Klavs; Andersen, Torben Ravn; Jørgensen, Sten Bay

    1998-01-01

    In this paper the results of a bifurcation analysis on heterogeneous azeotropic distillation sequences are given. Two sequences suitable for ethanol dehydration are compared: The 'direct' and the 'indirect' sequence. It is shown, that the two sequences, despite their similarities, exhibit very...... different static behavior. The method of Petlyuk and Avet'yan (1971), Bekiaris et al. (1993), which assumes infinite reflux and infinite number of stages, is extended to and applied on heterogeneous azeotropic distillation sequences. The predictions are substantiated through simulations. The static sequence...

  7. Blind sequence-length estimation of low-SNR cyclostationary sequences

    CSIR Research Space (South Africa)

    Vlok, JD

    2014-06-01

    Full Text Available Several existing direct-sequence spread spectrum (DSSS) detection and estimation algorithms assume prior knowledge of the symbol period or sequence length, although very few sequence-length estimation techniques are available in the literature...

  8. Infinite matrices and sequence spaces

    CERN Document Server

    Cooke, Richard G

    2014-01-01

    This clear and correct summation of basic results from a specialized field focuses on the behavior of infinite matrices in general, rather than on properties of special matrices. Three introductory chapters guide students to the manipulation of infinite matrices, covering definitions and preliminary ideas, reciprocals of infinite matrices, and linear equations involving infinite matrices.From the fourth chapter onward, the author treats the application of infinite matrices to the summability of divergent sequences and series from various points of view. Topics include consistency, mutual consi

  9. Parallel motif extraction from very long sequences

    KAUST Repository

    Sahli, Majed; Mansour, Essam; Kalnis, Panos

    2013-01-01

    Motifs are frequent patterns used to identify biological functionality in genomic sequences, periodicity in time series, or user trends in web logs. In contrast to a lot of existing work that focuses on collections of many short sequences, modern

  10. Computational analysis of sequence selection mechanisms.

    Science.gov (United States)

    Meyerguz, Leonid; Grasso, Catherine; Kleinberg, Jon; Elber, Ron

    2004-04-01

    Mechanisms leading to gene variations are responsible for the diversity of species and are important components of the theory of evolution. One constraint on gene evolution is that of protein foldability; the three-dimensional shapes of proteins must be thermodynamically stable. We explore the impact of this constraint and calculate properties of foldable sequences using 3660 structures from the Protein Data Bank. We seek a selection function that receives sequences as input, and outputs survival probability based on sequence fitness to structure. We compute the number of sequences that match a particular protein structure with energy lower than the native sequence, the density of the number of sequences, the entropy, and the "selection" temperature. The mechanism of structure selection for sequences longer than 200 amino acids is approximately universal. For shorter sequences, it is not. We speculate on concrete evolutionary mechanisms that show this behavior.

  11. The recurrence sequences via Sylvester matrices

    Science.gov (United States)

    Karaduman, Erdal; Deveci, Ömür

    2017-07-01

    In this work, we define the Pell-Jacobsthal-Slyvester sequence and the Jacobsthal-Pell-Slyvester sequence by using the Slyvester matrices which are obtained from the characteristic polynomials of the Pell and Jacobsthal sequences and then, we study the sequences defined modulo m. Also, we obtain the cyclic groups and the semigroups from the generating matrices of these sequences when read modulo m and then, we derive the relationships among the orders of the cyclic groups and the periods of the sequences. Furthermore, we redefine Pell-Jacobsthal-Slyvester sequence and the Jacobsthal-Pell-Slyvester sequence by means of the elements of the groups and then, we examine them in the finite groups.

  12. ON SOME RECURRENCE TYPE SMARANDACHE SEQUENCES

    OpenAIRE

    MAJUMDAR, A.A.K.; GUNARTO, H.

    2000-01-01

    In this paper, we study some properties of ten recurrence type Smarandache sequences, namely, the Smarandache odd, even, prime product, square product, higher-power product, permutation, consecutive, reverse, symmetric, and pierced chain sequences.

  13. "First generation" automated DNA sequencing technology.

    Science.gov (United States)

    Slatko, Barton E; Kieleczawa, Jan; Ju, Jingyue; Gardner, Andrew F; Hendrickson, Cynthia L; Ausubel, Frederick M

    2011-10-01

    Beginning in the 1980s, automation of DNA sequencing has greatly increased throughput, reduced costs, and enabled large projects to be completed more easily. The development of automation technology paralleled the development of other aspects of DNA sequencing: better enzymes and chemistry, separation and imaging technology, sequencing protocols, robotics, and computational advancements (including base-calling algorithms with quality scores, database developments, and sequence analysis programs). Despite the emergence of high-throughput sequencing platforms, automated Sanger sequencing technology remains useful for many applications. This unit provides background and a description of the "First-Generation" automated DNA sequencing technology. It also includes protocols for using the current Applied Biosystems (ABI) automated DNA sequencing machines. © 2011 by John Wiley & Sons, Inc.

  14. Comparative analysis of sequences from PT 2013

    DEFF Research Database (Denmark)

    Mikkelsen, Susie Sommer

    Sheatfish and not EHNV. Generally, mistakes occurred at the ends of the sequences. This can be due to several factors. One is that the sequence has not been trimmed of the sequence primer sites. Another is the lack of quality control of the chromatogram. Finally, sequencing in just one direction can result...... diseases in Europe. As part of the EURL proficiency test for fish diseases it is required to sequence any RANA virus isolates found in any of the samples. It is also highly recommended to sequence the ISA virus to determine whether it be HPRΔ or HPR0. Furthermore, it is recommended that any VHSV and IHNV...... isolates be genotyped. As part of the evaluation of the proficiency results it was decided this year to look into the quality and similarity of the sequence results for selected viruses. Ampoule III in the proficiency test 2013 contained an EHNV isolate. The EURL received 43 sequences from 41 laboratories...

  15. Perfect sequences over the real quaternions

    OpenAIRE

    Kuznetsov, Oleg

    2017-01-01

    In this Thesis, perfect sequences over the real quaternions are first considered. Definitions for the right and left periodic autocorrelation functions are given, and right and left perfect sequences introduced. It is shown that the right (left) perfection of any sequence implies the left (right) perfection, so concepts of right and left perfect sequences over the real quaternions are equivalent. Unitary transformations of the quaternion space ℍ are then considered. Using the equivalence of t...

  16. Information decomposition method to analyze symbolical sequences

    International Nuclear Information System (INIS)

    Korotkov, E.V.; Korotkova, M.A.; Kudryashov, N.A.

    2003-01-01

    The information decomposition (ID) method to analyze symbolical sequences is presented. This method allows us to reveal a latent periodicity of any symbolical sequence. The ID method is shown to have advantages in comparison with application of the Fourier transformation, the wavelet transform and the dynamic programming method to look for latent periodicity. Examples of the latent periods for poetic texts, DNA sequences and amino acids are presented. Possible origin of a latent periodicity for different symbolical sequences is discussed

  17. Parallel sequencing lives, or what makes large sequencing projects successful.

    Science.gov (United States)

    Quilez, Javier; Vidal, Enrique; Dily, François Le; Serra, François; Cuartero, Yasmina; Stadhouders, Ralph; Graf, Thomas; Marti-Renom, Marc A; Beato, Miguel; Filion, Guillaume

    2017-11-01

    T47D_rep2 and b1913e6c1_51720e9cf were 2 Hi-C samples. They were born and processed at the same time, yet their fates were very different. The life of b1913e6c1_51720e9cf was simple and fruitful, while that of T47D_rep2 was full of accidents and sorrow. At the heart of these differences lies the fact that b1913e6c1_51720e9cf was born under a lab culture of Documentation, Automation, Traceability, and Autonomy and compliance with the FAIR Principles. Their lives are a lesson for those who wish to embark on the journey of managing high-throughput sequencing data. © The Author 2017. Published by Oxford University Press.

  18. MatrixPlot: visualizing sequence constraints

    DEFF Research Database (Denmark)

    Gorodkin, Jan; Stærfeldt, Hans Henrik; Lund, Ole

    1999-01-01

    MatrixPlot: visualizing sequence constraints. Sub-title Abstract Summary : MatrixPlot is a program for making high-quality matrix plots, such as mutual information plots of sequence alignments and distance matrices of sequences with known three-dimensional coordinates. The user can add information...

  19. Comparative genomics beyond sequence-based alignments

    DEFF Research Database (Denmark)

    Þórarinsson, Elfar; Yao, Zizhen; Wiklund, Eric D.

    2008-01-01

    Recent computational scans for non-coding RNAs (ncRNAs) in multiple organisms have relied on existing multiple sequence alignments. However, as sequence similarity drops, a key signal of RNA structure--frequent compensating base changes--is increasingly likely to cause sequence-based alignment me...

  20. DNA sequence modeling based on context trees

    NARCIS (Netherlands)

    Kusters, C.J.; Ignatenko, T.; Roland, J.; Horlin, F.

    2015-01-01

    Genomic sequences contain instructions for protein and cell production. Therefore understanding and identification of biologically and functionally meaningful patterns in DNA sequences is of paramount importance. Modeling of DNA sequences in its turn can help to better understand and identify such

  1. Compact flow diagrams for state sequences

    NARCIS (Netherlands)

    Buchin, K.A.; Buchin, M.E.; Gudmundsson, J.; Horton, M.J.; Sijben, S.

    2016-01-01

    We introduce the concept of compactly representing a large number of state sequences, e.g., sequences of activities, as a flow diagram. We argue that the flow diagram representation gives an intuitive summary that allows the user to detect patterns among large sets of state sequences. Simplified,

  2. Blazar Sequence in Fermi Era Liang Chen

    Indian Academy of Sciences (India)

    Abstract. In this paper, we review the latest research results on the topic of blazar sequence. It seems that the blazar sequence is phenomenally ruled out, while the theoretical blazar sequence still holds. We point out that black hole mass is a dominated parameter accounting for high-power- high-synchrotron-peaked and ...

  3. Tidying up international nucleotide sequence databases: ecological, geographical and sequence quality annotation of its sequences of mycorrhizal fungi.

    Science.gov (United States)

    Tedersoo, Leho; Abarenkov, Kessy; Nilsson, R Henrik; Schüssler, Arthur; Grelet, Gwen-Aëlle; Kohout, Petr; Oja, Jane; Bonito, Gregory M; Veldre, Vilmar; Jairus, Teele; Ryberg, Martin; Larsson, Karl-Henrik; Kõljalg, Urmas

    2011-01-01

    Sequence analysis of the ribosomal RNA operon, particularly the internal transcribed spacer (ITS) region, provides a powerful tool for identification of mycorrhizal fungi. The sequence data deposited in the International Nucleotide Sequence Databases (INSD) are, however, unfiltered for quality and are often poorly annotated with metadata. To detect chimeric and low-quality sequences and assign the ectomycorrhizal fungi to phylogenetic lineages, fungal ITS sequences were downloaded from INSD, aligned within family-level groups, and examined through phylogenetic analyses and BLAST searches. By combining the fungal sequence database UNITE and the annotation and search tool PlutoF, we also added metadata from the literature to these accessions. Altogether 35,632 sequences belonged to mycorrhizal fungi or originated from ericoid and orchid mycorrhizal roots. Of these sequences, 677 were considered chimeric and 2,174 of low read quality. Information detailing country of collection, geographical coordinates, interacting taxon and isolation source were supplemented to cover 78.0%, 33.0%, 41.7% and 96.4% of the sequences, respectively. These annotated sequences are publicly available via UNITE (http://unite.ut.ee/) for downstream biogeographic, ecological and taxonomic analyses. In European Nucleotide Archive (ENA; http://www.ebi.ac.uk/ena/), the annotated sequences have a special link-out to UNITE. We intend to expand the data annotation to additional genes and all taxonomic groups and functional guilds of fungi.

  4. Permutation Entropy for Random Binary Sequences

    Directory of Open Access Journals (Sweden)

    Lingfeng Liu

    2015-12-01

    Full Text Available In this paper, we generalize the permutation entropy (PE measure to binary sequences, which is based on Shannon’s entropy, and theoretically analyze this measure for random binary sequences. We deduce the theoretical value of PE for random binary sequences, which can be used to measure the randomness of binary sequences. We also reveal the relationship between this PE measure with other randomness measures, such as Shannon’s entropy and Lempel–Ziv complexity. The results show that PE is consistent with these two measures. Furthermore, we use PE as one of the randomness measures to evaluate the randomness of chaotic binary sequences.

  5. The 2016 Kumamoto earthquake sequence.

    Science.gov (United States)

    Kato, Aitaro; Nakamura, Kouji; Hiyama, Yohei

    2016-01-01

    Beginning in April 2016, a series of shallow, moderate to large earthquakes with associated strong aftershocks struck the Kumamoto area of Kyushu, SW Japan. An M j 7.3 mainshock occurred on 16 April 2016, close to the epicenter of an M j 6.5 foreshock that occurred about 28 hours earlier. The intense seismicity released the accumulated elastic energy by right-lateral strike slip, mainly along two known, active faults. The mainshock rupture propagated along multiple fault segments with different geometries. The faulting style is reasonably consistent with regional deformation observed on geologic timescales and with the stress field estimated from seismic observations. One striking feature of this sequence is intense seismic activity, including a dynamically triggered earthquake in the Oita region. Following the mainshock rupture, postseismic deformation has been observed, as well as expansion of the seismicity front toward the southwest and northwest.

  6. Data selector group sequencer interface

    International Nuclear Information System (INIS)

    Zizka, G.; Turko, B.

    1984-01-01

    A CAMAC-based module for high rate data selection and transfer to Tracor Northern TN-1700 multichannel analysis system is described. The module can select any group of 4096 consecutive addresses of events, in the range of 24 bits. This module solves the problem of connecting a number of time digitizing systems to the memory of a multichannel analyzer. Continuous processing rate up to 200,000 events per second along with the live display make the testing of the above systems very efficient and relatively inexpensive. The module also can be programmed for storing the preset group of addresses into more than one section of the memory. The events are analyzed in each section of the memory during the preset time. Multiple spectra can thus be taken automatically in a sequence

  7. A main sequence for quasars

    Science.gov (United States)

    Marziani, Paola; Dultzin, Deborah; Sulentic, Jack W.; Del Olmo, Ascensión; Negrete, C. A.; Martínez-Aldama, Mary L.; D'Onofrio, Mauro; Bon, Edi; Bon, Natasa; Stirpe, Giovanna M.

    2018-03-01

    The last 25 years saw a major step forward in the analysis of optical and UV spectroscopic data of large quasar samples. Multivariate statistical approaches have led to the definition of systematic trends in observational properties that are the basis of physical and dynamical modeling of quasar structure. We discuss the empirical correlates of the so-called “main sequence” associated with the quasar Eigenvector 1, its governing physical parameters and several implications on our view of the quasar structure, as well as some luminosity effects associated with the virialized component of the line emitting regions. We also briefly discuss quasars in a segment of the main sequence that includes the strongest FeII emitters. These sources show a small dispersion around a well-defined Eddington ratio value, a property which makes them potential Eddington standard candles.

  8. The 2016 Kumamoto earthquake sequence

    Science.gov (United States)

    KATO, Aitaro; NAKAMURA, Kouji; HIYAMA, Yohei

    2016-01-01

    Beginning in April 2016, a series of shallow, moderate to large earthquakes with associated strong aftershocks struck the Kumamoto area of Kyushu, SW Japan. An Mj 7.3 mainshock occurred on 16 April 2016, close to the epicenter of an Mj 6.5 foreshock that occurred about 28 hours earlier. The intense seismicity released the accumulated elastic energy by right-lateral strike slip, mainly along two known, active faults. The mainshock rupture propagated along multiple fault segments with different geometries. The faulting style is reasonably consistent with regional deformation observed on geologic timescales and with the stress field estimated from seismic observations. One striking feature of this sequence is intense seismic activity, including a dynamically triggered earthquake in the Oita region. Following the mainshock rupture, postseismic deformation has been observed, as well as expansion of the seismicity front toward the southwest and northwest. PMID:27725474

  9. A Main Sequence for Quasars

    Directory of Open Access Journals (Sweden)

    Paola Marziani

    2018-03-01

    Full Text Available The last 25 years saw a major step forward in the analysis of optical and UV spectroscopic data of large quasar samples. Multivariate statistical approaches have led to the definition of systematic trends in observational properties that are the basis of physical and dynamical modeling of quasar structure. We discuss the empirical correlates of the so-called “main sequence” associated with the quasar Eigenvector 1, its governing physical parameters and several implications on our view of the quasar structure, as well as some luminosity effects associated with the virialized component of the line emitting regions. We also briefly discuss quasars in a segment of the main sequence that includes the strongest FeII emitters. These sources show a small dispersion around a well-defined Eddington ratio value, a property which makes them potential Eddington standard candles.

  10. RANDNA: a random DNA sequence generator.

    Science.gov (United States)

    Piva, Francesco; Principato, Giovanni

    2006-01-01

    Monte Carlo simulations are useful to verify the significance of data. Genomic regularities, such as the nucleotide correlations or the not uniform distribution of the motifs throughout genomic or mature mRNA sequences, exist and their significance can be checked by means of the Monte Carlo test. The test needs good quality random sequences in order to work, moreover they should have the same nucleotide distribution as the sequences in which the regularities have been found. Random DNA sequences are also useful to estimate the background score of an alignment, that is a threshold below which the resulting score is merely due to chance. We have developed RANDNA, a free software which allows to produce random DNA or RNA sequences setting both their length and the percentage of nucleotide composition. Sequences having the same nucleotide distribution of exonic, intronic or intergenic sequences can be generated. Its graphic interface makes it possible to easily set the parameters that characterize the sequences being produced and saved in a text format file. The pseudo-random number generator function of Borland Delphi 6 is used, since it guarantees a good randomness, a long cycle length and a high speed. We have checked the quality of sequences generated by the software, by means of well-known tests, both by themselves and versus genuine random sequences. We show the good quality of the generated sequences. The software, complete with examples and documentation, is freely available to users from: http://www.introni.it/en/software.

  11. Locomotor sequence learning in visually guided walking

    DEFF Research Database (Denmark)

    Choi, Julia T; Jensen, Peter; Nielsen, Jens Bo

    2016-01-01

    walking. In addition, we determined how age (i.e., healthy young adults vs. children) and biomechanical factors (i.e., walking speed) affected the rate and magnitude of locomotor sequence learning. The results showed that healthy young adults (age 24 ± 5 years, N = 20) could learn a specific sequence...... of step lengths over 300 training steps. Younger children (age 6-10 years, N = 8) have lower baseline performance, but their magnitude and rate of sequence learning was the same compared to older children (11-16 years, N = 10) and healthy adults. In addition, learning capacity may be more limited...... to modify step length from one trial to the next. Our sequence learning paradigm is derived from the serial reaction-time (SRT) task that has been used in upper limb studies. Both random and ordered sequences of step lengths were used to measure sequence-specific and sequence non-specific learning during...

  12. The RNA world, automatic sequences and oncogenetics

    Energy Technology Data Exchange (ETDEWEB)

    Tahir Shah, K

    1993-04-01

    We construct a model of the RNA world in terms of naturally evolving nucleotide sequences assuming only Crick-Watson base pairing and self-cleaving/splicing capability. These sequences have the following properties. (1) They are recognizable by an automation (or automata). That is, to each k-sequence, there exist a k-automation which accepts, recognizes or generates the k-sequence. These are known as automatic sequences. Fibonacci and Morse-Thue sequences are the most natural outcome of pre-biotic chemical conditions. (2) Infinite (resp. large) sequences are self-similar (resp. nearly self-similar) under certain rewrite rules and consequently give rise to fractal (resp.fractal-like) structures. Computationally, such sequences can also be generated by their corresponding deterministic parallel re-write system, known as a DOL system. The self-similar sequences are fixed points of their respective rewrite rules. Some of these automatic sequences have the capability that they can read or ``accept`` other sequences while others can detect errors and trigger error-correcting mechanisms. They can be enlarged and have block and/or palindrome structure. Linear recurring sequences such as Fibonacci sequence are simply Feed-back Shift Registers, a well know model of information processing machines. We show that a mutation of any rewrite rule can cause a combinatorial explosion of error and relates this to oncogenetical behavior. On the other hand, a mutation of sequences that are not rewrite rules, leads to normal evolutionary change. Known experimental results support our hypothesis. (author). Refs.

  13. The RNA world, automatic sequences and oncogenetics

    International Nuclear Information System (INIS)

    Tahir Shah, K.

    1993-04-01

    We construct a model of the RNA world in terms of naturally evolving nucleotide sequences assuming only Crick-Watson base pairing and self-cleaving/splicing capability. These sequences have the following properties. 1) They are recognizable by an automation (or automata). That is, to each k-sequence, there exist a k-automation which accepts, recognizes or generates the k-sequence. These are known as automatic sequences. Fibonacci and Morse-Thue sequences are the most natural outcome of pre-biotic chemical conditions. 2) Infinite (resp. large) sequences are self-similar (resp. nearly self-similar) under certain rewrite rules and consequently give rise to fractal (resp.fractal-like) structures. Computationally, such sequences can also be generated by their corresponding deterministic parallel re-write system, known as a DOL system. The self-similar sequences are fixed points of their respective rewrite rules. Some of these automatic sequences have the capability that they can read or 'accept' other sequences while others can detect errors and trigger error-correcting mechanisms. They can be enlarged and have block and/or palindrome structure. Linear recurring sequences such as Fibonacci sequence are simply Feed-back Shift Registers, a well know model of information processing machines. We show that a mutation of any rewrite rule can cause a combinatorial explosion of error and relates this to oncogenetical behavior. On the other hand, a mutation of sequences that are not rewrite rules, leads to normal evolutionary change. Known experimental results support our hypothesis. (author). Refs

  14. Targeted assembly of short sequence reads.

    Directory of Open Access Journals (Sweden)

    René L Warren

    Full Text Available As next-generation sequence (NGS production continues to increase, analysis is becoming a significant bottleneck. However, in situations where information is required only for specific sequence variants, it is not necessary to assemble or align whole genome data sets in their entirety. Rather, NGS data sets can be mined for the presence of sequence variants of interest by localized assembly, which is a faster, easier, and more accurate approach. We present TASR, a streamlined assembler that interrogates very large NGS data sets for the presence of specific variants by only considering reads within the sequence space of input target sequences provided by the user. The NGS data set is searched for reads with an exact match to all possible short words within the target sequence, and these reads are then assembled stringently to generate a consensus of the target and flanking sequence. Typically, variants of a particular locus are provided as different target sequences, and the presence of the variant in the data set being interrogated is revealed by a successful assembly outcome. However, TASR can also be used to find unknown sequences that flank a given target. We demonstrate that TASR has utility in finding or confirming genomic mutations, polymorphisms, fusions and integration events. Targeted assembly is a powerful method for interrogating large data sets for the presence of sequence variants of interest. TASR is a fast, flexible and easy to use tool for targeted assembly.

  15. Pareto optimal pairwise sequence alignment.

    Science.gov (United States)

    DeRonne, Kevin W; Karypis, George

    2013-01-01

    Sequence alignment using evolutionary profiles is a commonly employed tool when investigating a protein. Many profile-profile scoring functions have been developed for use in such alignments, but there has not yet been a comprehensive study of Pareto optimal pairwise alignments for combining multiple such functions. We show that the problem of generating Pareto optimal pairwise alignments has an optimal substructure property, and develop an efficient algorithm for generating Pareto optimal frontiers of pairwise alignments. All possible sets of two, three, and four profile scoring functions are used from a pool of 11 functions and applied to 588 pairs of proteins in the ce_ref data set. The performance of the best objective combinations on ce_ref is also evaluated on an independent set of 913 protein pairs extracted from the BAliBASE RV11 data set. Our dynamic-programming-based heuristic approach produces approximated Pareto optimal frontiers of pairwise alignments that contain comparable alignments to those on the exact frontier, but on average in less than 1/58th the time in the case of four objectives. Our results show that the Pareto frontiers contain alignments whose quality is better than the alignments obtained by single objectives. However, the task of identifying a single high-quality alignment among those in the Pareto frontier remains challenging.

  16. Hierarchically nested river landform sequences

    Science.gov (United States)

    Pasternack, G. B.; Weber, M. D.; Brown, R. A.; Baig, D.

    2017-12-01

    River corridors exhibit landforms nested within landforms repeatedly down spatial scales. In this study we developed, tested, and implemented a new way to create river classifications by mapping domains of fluvial processes with respect to the hierarchical organization of topographic complexity that drives fluvial dynamism. We tested this approach on flow convergence routing, a morphodynamic mechanism with different states depending on the structure of nondimensional topographic variability. Five nondimensional landform types with unique functionality (nozzle, wide bar, normal channel, constricted pool, and oversized) represent this process at any flow. When this typology is nested at base flow, bankfull, and floodprone scales it creates a system with up to 125 functional types. This shows how a single mechanism produces complex dynamism via nesting. Given the classification, we answered nine specific scientific questions to investigate the abundance, sequencing, and hierarchical nesting of these new landform types using a 35-km gravel/cobble river segment of the Yuba River in California. The nested structure of flow convergence routing landforms found in this study revealed that bankfull landforms are nested within specific floodprone valley landform types, and these types control bankfull morphodynamics during moderate to large floods. As a result, this study calls into question the prevailing theory that the bankfull channel of a gravel/cobble river is controlled by in-channel, bankfull, and/or small flood flows. Such flows are too small to initiate widespread sediment transport in a gravel/cobble river with topographic complexity.

  17. Sequencing intractable DNA to close microbial genomes.

    Directory of Open Access Journals (Sweden)

    Richard A Hurt

    Full Text Available Advancement in high throughput DNA sequencing technologies has supported a rapid proliferation of microbial genome sequencing projects, providing the genetic blueprint for in-depth studies. Oftentimes, difficult to sequence regions in microbial genomes are ruled "intractable" resulting in a growing number of genomes with sequence gaps deposited in databases. A procedure was developed to sequence such problematic regions in the "non-contiguous finished" Desulfovibrio desulfuricans ND132 genome (6 intractable gaps and the Desulfovibrio africanus genome (1 intractable gap. The polynucleotides surrounding each gap formed GC rich secondary structures making the regions refractory to amplification and sequencing. Strand-displacing DNA polymerases used in concert with a novel ramped PCR extension cycle supported amplification and closure of all gap regions in both genomes. The developed procedures support accurate gene annotation, and provide a step-wise method that reduces the effort required for genome finishing.

  18. Sequencing Intractable DNA to Close Microbial Genomes

    Energy Technology Data Exchange (ETDEWEB)

    Hurt, Jr., Richard Ashley [ORNL; Brown, Steven D [ORNL; Podar, Mircea [ORNL; Palumbo, Anthony Vito [ORNL; Elias, Dwayne A [ORNL

    2012-01-01

    Advancement in high throughput DNA sequencing technologies has supported a rapid proliferation of microbial genome sequencing projects, providing the genetic blueprint for for in-depth studies. Oftentimes, difficult to sequence regions in microbial genomes are ruled intractable resulting in a growing number of genomes with sequence gaps deposited in databases. A procedure was developed to sequence such difficult regions in the non-contiguous finished Desulfovibrio desulfuricans ND132 genome (6 intractable gaps) and the Desulfovibrio africanus genome (1 intractable gap). The polynucleotides surrounding each gap formed GC rich secondary structures making the regions refractory to amplification and sequencing. Strand-displacing DNA polymerases used in concert with a novel ramped PCR extension cycle supported amplification and closure of all gap regions in both genomes. These developed procedures support accurate gene annotation, and provide a step-wise method that reduces the effort required for genome finishing.

  19. Identification of human chromosome 22 transcribed sequences with ORF expressed sequence tags

    Science.gov (United States)

    de Souza, Sandro J.; Camargo, Anamaria A.; Briones, Marcelo R. S.; Costa, Fernando F.; Nagai, Maria Aparecida; Verjovski-Almeida, Sergio; Zago, Marco A.; Andrade, Luis Eduardo C.; Carrer, Helaine; El-Dorry, Hamza F. A.; Espreafico, Enilza M.; Habr-Gama, Angelita; Giannella-Neto, Daniel; Goldman, Gustavo H.; Gruber, Arthur; Hackel, Christine; Kimura, Edna T.; Maciel, Rui M. B.; Marie, Suely K. N.; Martins, Elizabeth A. L.; Nóbrega, Marina P.; Paçó-Larson, Maria Luisa; Pardini, Maria Inês M. C.; Pereira, Gonçalo G.; Pesquero, João Bosco; Rodrigues, Vanderlei; Rogatto, Silvia R.; da Silva, Ismael D. C. G.; Sogayar, Mari C.; de Fátima Sonati, Maria; Tajara, Eloiza H.; Valentini, Sandro R.; Acencio, Marcio; Alberto, Fernando L.; Amaral, Maria Elisabete J.; Aneas, Ivy; Bengtson, Mário Henrique; Carraro, Dirce M.; Carvalho, Alex F.; Carvalho, Lúcia Helena; Cerutti, Janete M.; Corrêa, Maria Lucia C.; Costa, Maria Cristina R.; Curcio, Cyntia; Gushiken, Tsieko; Ho, Paulo L.; Kimura, Elza; Leite, Luciana C. C.; Maia, Gustavo; Majumder, Paromita; Marins, Mozart; Matsukuma, Adriana; Melo, Analy S. A.; Mestriner, Carlos Alberto; Miracca, Elisabete C.; Miranda, Daniela C.; Nascimento, Ana Lucia T. O.; Nóbrega, Francisco G.; Ojopi, Élida P. B.; Pandolfi, José Rodrigo C.; Pessoa, Luciana Gilbert; Rahal, Paula; Rainho, Claudia A.; da Ro's, Nancy; de Sá, Renata G.; Sales, Magaly M.; da Silva, Neusa P.; Silva, Tereza C.; da Silva, Wilson; Simão, Daniel F.; Sousa, Josane F.; Stecconi, Daniella; Tsukumo, Fernando; Valente, Valéria; Zalcberg, Heloisa; Brentani, Ricardo R.; Reis, Luis F. L.; Dias-Neto, Emmanuel; Simpson, Andrew J. G.

    2000-01-01

    Transcribed sequences in the human genome can be identified with confidence only by alignment with sequences derived from cDNAs synthesized from naturally occurring mRNAs. We constructed a set of 250,000 cDNAs that represent partial expressed gene sequences and that are biased toward the central coding regions of the resulting transcripts. They are termed ORF expressed sequence tags (ORESTES). The 250,000 ORESTES were assembled into 81,429 contigs. Of these, 1,181 (1.45%) were found to match sequences in chromosome 22 with at least one ORESTES contig for 162 (65.6%) of the 247 known genes, for 67 (44.6%) of the 150 related genes, and for 45 of the 148 (30.4%) EST-predicted genes on this chromosome. Using a set of stringent criteria to validate our sequences, we identified a further 219 previously unannotated transcribed sequences on chromosome 22. Of these, 171 were in fact also defined by EST or full length cDNA sequences available in GenBank but not utilized in the initial annotation of the first human chromosome sequence. Thus despite representing less than 15% of all expressed human sequences in the public databases at the time of the present analysis, ORESTES sequences defined 48 transcribed sequences on chromosome 22 not defined by other sequences. All of the transcribed sequences defined by ORESTES coincided with DNA regions predicted as encoding exons by genscan. (http://genes.mit.edu/GENSCAN.html). PMID:11070084

  20. cis sequence effects on gene expression

    Directory of Open Access Journals (Sweden)

    Jacobs Kevin

    2007-08-01

    Full Text Available Abstract Background Sequence and transcriptional variability within and between individuals are typically studied independently. The joint analysis of sequence and gene expression variation (genetical genomics provides insight into the role of linked sequence variation in the regulation of gene expression. We investigated the role of sequence variation in cis on gene expression (cis sequence effects in a group of genes commonly studied in cancer research in lymphoblastoid cell lines. We estimated the proportion of genes exhibiting cis sequence effects and the proportion of gene expression variation explained by cis sequence effects using three different analytical approaches, and compared our results to the literature. Results We generated gene expression profiling data at N = 697 candidate genes from N = 30 lymphoblastoid cell lines for this study and used available candidate gene resequencing data at N = 552 candidate genes to identify N = 30 candidate genes with sufficient variance in both datasets for the investigation of cis sequence effects. We used two additive models and the haplotype phylogeny scanning approach of Templeton (Tree Scanning to evaluate association between individual SNPs, all SNPs at a gene, and diplotypes, with log-transformed gene expression. SNPs and diplotypes at eight candidate genes exhibited statistically significant (p cis sequence effects in our study, respectively. Conclusion Based on analysis of our results and the extant literature, one in four genes exhibits significant cis sequence effects, and for these genes, about 30% of gene expression variation is accounted for by cis sequence variation. Despite diverse experimental approaches, the presence or absence of significant cis sequence effects is largely supported by previously published studies.