WorldWideScience

Sample records for replicate nonuniform alignment

  1. Cryo-EM image alignment based on nonuniform fast Fourier transform.

    Science.gov (United States)

    Yang, Zhengfan; Penczek, Pawel A

    2008-08-01

    In single particle analysis, two-dimensional (2-D) alignment is a fundamental step intended to put into register various particle projections of biological macromolecules collected at the electron microscope. The efficiency and quality of three-dimensional (3-D) structure reconstruction largely depends on the computational speed and alignment accuracy of this crucial step. In order to improve the performance of alignment, we introduce a new method that takes advantage of the highly accurate interpolation scheme based on the gridding method, a version of the nonuniform fast Fourier transform, and utilizes a multi-dimensional optimization algorithm for the refinement of the orientation parameters. Using simulated data, we demonstrate that by using less than half of the sample points and taking twice the runtime, our new 2-D alignment method achieves dramatically better alignment accuracy than that based on quadratic interpolation. We also apply our method to image to volume registration, the key step in the single particle EM structure refinement protocol. We find that in this case the accuracy of the method not only surpasses the accuracy of the commonly used real-space implementation, but results are achieved in much shorter time, making gridding-based alignment a perfect candidate for efficient structure determination in single particle analysis.

  2. Cryo-EM image alignment based on nonuniform fast Fourier transform

    International Nuclear Information System (INIS)

    Yang Zhengfan; Penczek, Pawel A.

    2008-01-01

    In single particle analysis, two-dimensional (2-D) alignment is a fundamental step intended to put into register various particle projections of biological macromolecules collected at the electron microscope. The efficiency and quality of three-dimensional (3-D) structure reconstruction largely depends on the computational speed and alignment accuracy of this crucial step. In order to improve the performance of alignment, we introduce a new method that takes advantage of the highly accurate interpolation scheme based on the gridding method, a version of the nonuniform fast Fourier transform, and utilizes a multi-dimensional optimization algorithm for the refinement of the orientation parameters. Using simulated data, we demonstrate that by using less than half of the sample points and taking twice the runtime, our new 2-D alignment method achieves dramatically better alignment accuracy than that based on quadratic interpolation. We also apply our method to image to volume registration, the key step in the single particle EM structure refinement protocol. We find that in this case the accuracy of the method not only surpasses the accuracy of the commonly used real-space implementation, but results are achieved in much shorter time, making gridding-based alignment a perfect candidate for efficient structure determination in single particle analysis

  3. Mobile and replicated alignment of arrays in data-parallel programs

    Science.gov (United States)

    Chatterjee, Siddhartha; Gilbert, John R.; Schreiber, Robert

    1993-01-01

    When a data-parallel language like FORTRAN 90 is compiled for a distributed-memory machine, aggregate data objects (such as arrays) are distributed across the processor memories. The mapping determines the amount of residual communication needed to bring operands of parallel operations into alignment with each other. A common approach is to break the mapping into two stages: first, an alignment that maps all the objects to an abstract template, and then a distribution that maps the template to the processors. We solve two facets of the problem of finding alignments that reduce residual communication: we determine alignments that vary in loops, and objects that should have replicated alignments. We show that loop-dependent mobile alignment is sometimes necessary for optimum performance, and we provide algorithms with which a compiler can determine good mobile alignments for objects within do loops. We also identify situations in which replicated alignment is either required by the program itself (via spread operations) or can be used to improve performance. We propose an algorithm based on network flow that determines which objects to replicate so as to minimize the total amount of broadcast communication in replication. This work on mobile and replicated alignment extends our earlier work on determining static alignment.

  4. Mounting and Alignment of Full-Shell Replicated X-Ray Optics

    Science.gov (United States)

    Gubarev, Mikhail; Arnold, William; Kester, Thomas; Ramsey, Brian; Smithers, Martin

    2007-01-01

    We are developing grazing-incidence x-ray optics for astronomy. The optics are full-cylinder mirror shells fabricated using electroformed-nickel replication off super-polished mandrels. For space-based applications where weight is at a premium, very-thin-walled, light-weight mirrors are required. Such shells have been fabricated at MSFC with greater than 15 arcsec resolution. The challenge, however, is to preserve this resolution during mounting and assembly. We present here a status report on a mounting and alignment system currently under development at Marshall Space Flight Center to meet this challenge.

  5. Replication of self-centering optical fiber alignment structures using hot embossing

    Science.gov (United States)

    Ebraert, Evert; Wissmann, Markus; Barié, Nicole; Guttmann, Markus; Schneider, Marc; Kolew, Alexander; Worgull, Matthias; Beri, Stefano; Watté, Jan; Thienpont, Hugo; Van Erps, Jürgen

    2016-04-01

    With the demand for broadband connectivity on the rise due to various services like video-on-demand and cloud computing becoming more popular, the need for better connectivity infrastructure is high. The only future- proof option to supply this infrastructure is to deploy "fiber to the home" (FTTH) networks. One of the main difficulties with the deployment of FTTH is the vast amount of single-mode fiber (SMF) connections that need to be made. Hence there is a strong need for components which enable high performance, robust and easy-to- use SMF connectors. Since large-scale deployment is the goal, these components should be mass-producible at low cost. We discuss a rapid prototyping process on the basis of hot embossing replication of a self-centering alignment system (SCAS) based on three micro-springs, which can position a SMF independently of its diameter. This is beneficial since there is a fabrication tolerance of up to +/-1 μm on a standard G.652 SMF's diameter that can lead to losses if the outer diameter is used as a reference for alignment. The SCAS is first prototyped with deep proton writing (DPW) in polymethylmethacrylate (PMMA) after which it is glued to a copper substrate with an adhesive. Using an electroforming process, a nickel block is grown over the PMMA prototype followed by mechanical finishing to fabricate a structured nickel mould insert. Even though the mould insert shows non- ideal and rounded features it is used to create PMMA replicas of the SCAS by means of hot embossing. The SCAS possesses a central opening in which a bare SMF can be clamped, which is designed with a diameter of 121 μm. PMMA replicas are dimensionally characterized using a multisensor coordinate measurement machine and show a central opening diameter of 128.3 +/- 2.8 μm. This should be compared to the central opening diameter of the DPW prototype used for mould formation which was measured to be 120.5 μm. This shows that the electroforming and subsequent replication

  6. Linear q-nonuniform difference equations

    International Nuclear Information System (INIS)

    Bangerezako, Gaspard

    2010-01-01

    We introduce basic concepts of q-nonuniform differentiation and integration and study linear q-nonuniform difference equations and systems, as well as their application in q-nonuniform difference linear control systems. (author)

  7. Nonuniform sampling by quantiles

    Science.gov (United States)

    Craft, D. Levi; Sonstrom, Reilly E.; Rovnyak, Virginia G.; Rovnyak, David

    2018-03-01

    A flexible strategy for choosing samples nonuniformly from a Nyquist grid using the concept of statistical quantiles is presented for broad classes of NMR experimentation. Quantile-directed scheduling is intuitive and flexible for any weighting function, promotes reproducibility and seed independence, and is generalizable to multiple dimensions. In brief, weighting functions are divided into regions of equal probability, which define the samples to be acquired. Quantile scheduling therefore achieves close adherence to a probability distribution function, thereby minimizing gaps for any given degree of subsampling of the Nyquist grid. A characteristic of quantile scheduling is that one-dimensional, weighted NUS schedules are deterministic, however higher dimensional schedules are similar within a user-specified jittering parameter. To develop unweighted sampling, we investigated the minimum jitter needed to disrupt subharmonic tracts, and show that this criterion can be met in many cases by jittering within 25-50% of the subharmonic gap. For nD-NUS, three supplemental components to choosing samples by quantiles are proposed in this work: (i) forcing the corner samples to ensure sampling to specified maximum values in indirect evolution times, (ii) providing an option to triangular backfill sampling schedules to promote dense/uniform tracts at the beginning of signal evolution periods, and (iii) providing an option to force the edges of nD-NUS schedules to be identical to the 1D quantiles. Quantile-directed scheduling meets the diverse needs of current NUS experimentation, but can also be used for future NUS implementations such as off-grid NUS and more. A computer program implementing these principles (a.k.a. QSched) in 1D- and 2D-NUS is available under the general public license.

  8. Distributional Replication

    OpenAIRE

    Beare, Brendan K.

    2009-01-01

    Suppose that X and Y are random variables. We define a replicating function to be a function f such that f(X) and Y have the same distribution. In general, the set of replicating functions for a given pair of random variables may be infinite. Suppose we have some objective function, or cost function, defined over the set of replicating functions, and we seek to estimate the replicating function with the lowest cost. We develop an approach to estimating the cheapest replicating function that i...

  9. Field nonuniformity correction for quantitative analysis of digitized mammograms

    International Nuclear Information System (INIS)

    Pawluczyk, Olga; Yaffe, Martin J.

    2001-01-01

    Several factors, including the heel effect, variation in distance from the x-ray source to points in the image and path obliquity contribute to the signal nonuniformity of mammograms. To best use digitized mammograms for quantitative image analysis, these field non-uniformities must be corrected. An empirically based correction method, which uses a bowl-shaped calibration phantom, has been developed. Due to the annular spherical shape of the phantom, its attenuation is constant over the entire image. Remaining nonuniformities are due only to the heel and inverse square effects as well as the variable path through the beam filter, compression plate and image receptor. In logarithmic space, a normalized image of the phantom can be added to mammograms to correct for these effects. Then, an analytical correction for path obliquity in the breast can be applied to the images. It was found that the correction causes the errors associated with field nonuniformity to be reduced from 14% to 2% for a 4 cm block of material corresponding to a combination of 50% fibroglandular and 50% fatty breast tissue. A repeatability study has been conducted to show that in regions as far as 20 cm away from the chest wall, variations due to imaging conditions and phantom alignment contribute to <2% of overall corrected signal

  10. Replication Catastrophe

    DEFF Research Database (Denmark)

    Toledo, Luis; Neelsen, Kai John; Lukas, Jiri

    2017-01-01

    Proliferating cells rely on the so-called DNA replication checkpoint to ensure orderly completion of genome duplication, and its malfunction may lead to catastrophic genome disruption, including unscheduled firing of replication origins, stalling and collapse of replication forks, massive DNA...... breakage, and, ultimately, cell death. Despite many years of intensive research into the molecular underpinnings of the eukaryotic replication checkpoint, the mechanisms underlying the dismal consequences of its failure remain enigmatic. A recent development offers a unifying model in which the replication...... checkpoint guards against global exhaustion of rate-limiting replication regulators. Here we discuss how such a mechanism can prevent catastrophic genome disruption and suggest how to harness this knowledge to advance therapeutic strategies to eliminate cancer cells that inherently proliferate under...

  11. Database Replication

    CERN Document Server

    Kemme, Bettina

    2010-01-01

    Database replication is widely used for fault-tolerance, scalability and performance. The failure of one database replica does not stop the system from working as available replicas can take over the tasks of the failed replica. Scalability can be achieved by distributing the load across all replicas, and adding new replicas should the load increase. Finally, database replication can provide fast local access, even if clients are geographically distributed clients, if data copies are located close to clients. Despite its advantages, replication is not a straightforward technique to apply, and

  12. Nonuniform quantum turbulence in superfluids

    Science.gov (United States)

    Nemirovskii, Sergey K.

    2018-04-01

    The problem of quantum turbulence in a channel with an inhomogeneous counterflow of superfluid turbulent helium is studied. The counterflow velocity Vns x(y ) along the channel is supposed to have a parabolic profile in the transverse direction y . Such statement corresponds to the recent numerical simulation by Khomenko et al. [Phys. Rev. B 91, 180504 (2015), 10.1103/PhysRevB.91.180504]. The authors reported about a sophisticated behavior of the vortex-line density (VLD) L (r ,t ) , different from L ∝Vns x(y) 2 , which follows from the straightforward application of the conventional Vinen theory. It is clear that Vinen theory should be refined by taking into account transverse effects, and the way it ought to be done is the subject of active discussion in the literature. In this work, we discuss several possible mechanisms of the transverse flux of VLD L (r ,t ) which should be incorporated in the standard Vinen equation to describe adequately the inhomogeneous quantum turbulence. It is shown that the most effective among these mechanisms is the one that is related to the phase-slippage phenomenon. The use of this flux in the modernized Vinen equation corrects the situation with an unusual distribution of the vortex-line density, and satisfactorily describes the behavior L (r ,t ) both in stationary and nonstationary situations. The general problem of the phenomenological Vinen theory in the case of nonuniform and nonstationary quantum turbulence is thoroughly discussed.

  13. Haldane model under nonuniform strain

    Science.gov (United States)

    Ho, Yen-Hung; Castro, Eduardo V.; Cazalilla, Miguel A.

    2017-10-01

    We study the Haldane model under strain using a tight-binding approach, and compare the obtained results with the continuum-limit approximation. As in graphene, nonuniform strain leads to a time-reversal preserving pseudomagnetic field that induces (pseudo-)Landau levels. Unlike a real magnetic field, strain lifts the degeneracy of the zeroth pseudo-Landau levels at different valleys. Moreover, for the zigzag edge under uniaxial strain, strain removes the degeneracy within the pseudo-Landau levels by inducing a tilt in their energy dispersion. The latter arises from next-to-leading order corrections to the continuum-limit Hamiltonian, which are absent for a real magnetic field. We show that, for the lowest pseudo-Landau levels in the Haldane model, the dominant contribution to the tilt is different from graphene. In addition, although strain does not strongly modify the dispersion of the edge states, their interplay with the pseudo-Landau levels is different for the armchair and zigzag ribbons. Finally, we study the effect of strain in the band structure of the Haldane model at the critical point of the topological transition, thus shedding light on the interplay between nontrivial topology and strain in quantum anomalous Hall systems.

  14. Quasiparticles in non-uniformly magnetized plasma

    International Nuclear Information System (INIS)

    Sosenko, P.P.

    1994-01-01

    A quasiparticle concept is generalized for the case of non-uniformly magnetized plasma. Exact and reduced continuity equations for the microscopic density in the quasiparticle phase space are derived, and the nature of quasiparticles is analyzed. The theory is developed for the general case of relativistic particles in electromagnetic fields, besides non-uniform but stationary magnetic fields. Effects of non-stationary magnetic fields are briefly investigated also. 26 refs

  15. Properties of multilayer nonuniform holographic structures

    International Nuclear Information System (INIS)

    Pen, E F; Rodionov, Mikhail Yu

    2010-01-01

    Experimental results and analysis of properties of multilayer nonuniform holographic structures formed in photopolymer materials are presented. The theoretical hypotheses is proved that the characteristics of angular selectivity for the considered structures have a set of local maxima, whose number and width are determined by the thicknesses of intermediate layers and deep holograms and that the envelope of the maxima coincides with the selectivity contour of a single holographic array. It is also experimentally shown that hologram nonuniformities substantially distort shapes of selectivity characteristics: they become asymmetric, the local maxima differ in size and the depths of local minima reduce. The modelling results are made similar to experimental data by appropriately choosing the nonuniformity parameters. (imaging and image processing. holography)

  16. Beyond Alignment

    DEFF Research Database (Denmark)

    Beyond Alignment: Applying Systems Thinking to Architecting Enterprises is a comprehensive reader about how enterprises can apply systems thinking in their enterprise architecture practice, for business transformation and for strategic execution. The book's contributors find that systems thinking...

  17. Nonuniformities in organic liquid ionization calorimeters

    International Nuclear Information System (INIS)

    Wenzel, W.A.

    1989-06-01

    Hermeticity and uniformity in SSC calorimeter designs are compromised by structure and modularity. Some of the consequences of the cryogenic needs of liquid argon calorimetry are relatively well known. If the active medium is an organic liquid (TMP, TMS, etc.), a large number of independent liquid volumes is needed for safety and for rapid liquid exchange to eliminate local contamination. Modular construction ordinarily simplifies fabrication, assembly, handling and preliminary testing at the price of additional walls, other dead regions and many nonuniformities. Here we examine ways of minimizing the impact of some generic nonuniformities on the quality of calorimeter performance. 6 refs., 7 figs

  18. Capacitated Vehicle Routing with Nonuniform Speeds

    DEFF Research Database (Denmark)

    Gørtz, Inge Li; Molinaro, Marco; Nagarajan, Viswanath

    2016-01-01

    is the distance traveled divided by its speed.Our algorithm relies on a new approximate minimum spanning tree construction called Level-Prim, which is related to but different from Light Approximate Shortest-path Trees. We also extend the widely used tour-splitting technique to nonuniform speeds, using ideas from...

  19. Casimir energy of a nonuniform string

    Science.gov (United States)

    Hadasz, L.; Lambiase, G.; Nesterenko, V. V.

    2000-07-01

    The Casimir energy of a nonuniform string built up from two pieces with different speeds of sound is calculated. A standard procedure of subtracting the energy of an infinite uniform string is applied, the subtraction being interpreted as the renormalization of the string tension. It is shown that in the case of a homogeneous string this method is completely equivalent to zeta renormalization.

  20. Stone Stability in Non-uniform Flow

    NARCIS (Netherlands)

    Hoan, N.T.; Stive, M.J.F.; Booij, R.; Hofland, B.; Verhagen, H.J.

    2011-01-01

    This paper presents the results of an experimental study on stone stability under nonuniform turbulent flow, in particular expanding flow. Detailed measurements of both flow and turbulence and the bed stability are described. Than various manners of quantifying the hydraulic loads exerted on the

  1. Stone Stability under Stationary Nonuniform Flows

    NARCIS (Netherlands)

    Steenstra, Remco; Hofland, B.; Paarlberg, Andries; Smale, Alfons; Huthoff, Fredrik; Uijttewaal, W.S.J.

    2016-01-01

    A stability parameter for rock in bed protections under nonuniform stationary flow is derived. The influence of the mean flow velocity, turbulence, and mean acceleration of the flow are included explicitly in the parameter. The relatively new notion of explicitly incorporating the mean acceleration

  2. Radar Doppler Processing with Nonuniform Sampling.

    Energy Technology Data Exchange (ETDEWEB)

    Doerry, Armin W. [Sandia National Lab. (SNL-NM), Albuquerque, NM (United States)

    2017-07-01

    Conventional signal processing to estimate radar Doppler frequency often assumes uniform pulse/sample spacing. This is for the convenience of t he processing. More recent performance enhancements in processor capability allow optimally processing nonuniform pulse/sample spacing, thereby overcoming some of the baggage that attends uniform sampling, such as Doppler ambiguity and SNR losses due to sidelobe control measures.

  3. A new prosthetic alignment device to read and record prosthesis alignment data.

    Science.gov (United States)

    Pirouzi, Gholamhossein; Abu Osman, Noor Azuan; Ali, Sadeeq; Davoodi Makinejad, Majid

    2017-12-01

    Prosthetic alignment is an essential process to rehabilitate patients with amputations. This study presents, for the first time, an invented device to read and record prosthesis alignment data. The digital device consists of seven main parts: the trigger, internal shaft, shell, sensor adjustment button, digital display, sliding shell, and tip. The alignment data were read and recorded by the user or a computer to replicate prosthesis adjustment for future use or examine the sequence of changes in alignment and its effect on the posture of the patient. Alignment data were recorded at the anterior/posterior and medial/lateral positions for five patients. Results show the high level of confidence to record alignment data and replicate adjustments. Therefore, the device helps patients readjust their prosthesis by themselves, or prosthetists to perform adjustment for patients and analyze the effects of malalignment.

  4. Database Replication Prototype

    OpenAIRE

    Vandewall, R.

    2000-01-01

    This report describes the design of a Replication Framework that facilitates the implementation and com-parison of database replication techniques. Furthermore, it discusses the implementation of a Database Replication Prototype and compares the performance measurements of two replication techniques based on the Atomic Broadcast communication primitive: pessimistic active replication and optimistic active replication. The main contributions of this report can be split into four parts....

  5. Instruction sequence based non-uniform complexity classes

    NARCIS (Netherlands)

    Bergstra, J.A.; Middelburg, C.A.

    2013-01-01

    We present an approach to non-uniform complexity in which single-pass instruction sequences play a key part, and answer various questions that arise from this approach. We introduce several kinds of non-uniform complexity classes. One kind includes a counterpart of the well-known non-uniform

  6. Vortices in nonuniform upper-hybrid field

    International Nuclear Information System (INIS)

    Davydova, T.A.; Vranjes, J.

    1992-01-01

    The equations describing the interaction of an upper-hybrid pump wave with small low-frequency density perturbations are discussed under assumption that the pump is spatially nonuniform. The conditions for the modulational instability are investigated. Instead of a dispersion relation, describing the growth of perturbations in the case of an uniform pump, in our case of nonuniform pump a differential equation is obtained and from its eigenvalues are found the instability criteria. Taking into account the slow-frequency self-interaction terms some localized solutions similar to dipole vortices are found, but described by analytic functions in all space. It is shown that their characteristic size and speed are determined by the pump intensity and its spatial structure. (au)

  7. Non-uniform tube representation of proteins

    DEFF Research Database (Denmark)

    Hansen, Mikael Sonne

    Treating the full protein structure is often neither computationally nor physically possible. Instead one is forced to consider various reduced models capturing the properties of interest. Previous work have used tubular neighborhoods of the C-alpha backbone. However, assigning a unique radius...... might not correctly capture volume exclusion - of crucial importance when trying to understand a proteins $3$d-structure. We propose a new reduced model treating the protein as a non-uniform tube with a radius reflecting the positions of atoms. The tube representation is well suited considering X......-ray crystallographic resolution ~ 3Å while a varying radius accounts for the different sizes of side chains. Such a non-uniform tube better capture the protein geometry and has numerous applications in structural/computational biology from the classification of protein structures to sequence-structure prediction....

  8. Allowance for influence of gravity field nonuniformity

    Science.gov (United States)

    Tsysar, A. P.

    1987-03-01

    The constants of a quartz-metal pendulum used in higher-order gravimetric networks have been determined and a formula has been derived for the total correction for gravity field nonuniformity measurements made with the pendulum. Nomograms were constructed on the basis of these formulas and are used in introducing corrections into pendulum measurements. A table was prepared giving the components of the correction for some values of the derivatives of gravity potential from surrounding masses. Errors can be caused by building walls, the pedestal on which the instrument sits and other factors, and these must be taken into account since they increase the normal gravity gradient. After introducing these correction components for the nonuniform gravity field, the gravity field at the measurement point is related to the instrument point coinciding with the middle of the pendulum knife blade.

  9. Prelife catalysts and replicators

    OpenAIRE

    Ohtsuki, Hisashi; Nowak, Martin A.

    2009-01-01

    Life is based on replication and evolution. But replication cannot be taken for granted. We must ask what there was prior to replication and evolution. How does evolution begin? We have proposed prelife as a generative system that produces information and diversity in the absence of replication. We model prelife as a binary soup of active monomers that form random polymers. ‘Prevolutionary’ dynamics can have mutation and selection prior to replication. Some sequences might have catalytic acti...

  10. Surface magnetic canting in a nonuniform film

    International Nuclear Information System (INIS)

    Pini, M.G.; Rettori, A.; Pappas, D.P.; Anisimov, A.V.; Popov, A.P.

    2004-01-01

    The zero temperature equilibrium configuration of a nonuniform system made of a ferromagnetic (FM) monolayer on top of a semi-infinite FM film is calculated using a nonlinear mapping formulation of mean-field theory, where the surface is taken into account via an appropriate boundary condition. The analytical criterion for the existence of surface magnetic canting, previously obtained by Popov and Pappas, is also recovered

  11. Statistical evaluation of unobserved nonuniform corrosion in A216 steel

    International Nuclear Information System (INIS)

    Pulsipher, B.A.

    1988-07-01

    Tests designed to promote nonuniform corrosion have been conducted at PNL on A216 steel. In all of the tests performed to date, there have been no manifestations of significant nonuniform corrosion. Although this may suggest that nonuniform corrosion in A216 steel may not be a significant problem in the nuclear waste repository, a question arises as to whether enough tests have been conducted for a sufficient length of time to rule out nonuniform corrosion of A216 steel. In this report, a method for determining the required number of tests is examined for two of the mechanisms of nonuniform corrosion: pitting and crevice corrosion

  12. Subrandom methods for multidimensional nonuniform sampling.

    Science.gov (United States)

    Worley, Bradley

    2016-08-01

    Methods of nonuniform sampling that utilize pseudorandom number sequences to select points from a weighted Nyquist grid are commonplace in biomolecular NMR studies, due to the beneficial incoherence introduced by pseudorandom sampling. However, these methods require the specification of a non-arbitrary seed number in order to initialize a pseudorandom number generator. Because the performance of pseudorandom sampling schedules can substantially vary based on seed number, this can complicate the task of routine data collection. Approaches such as jittered sampling and stochastic gap sampling are effective at reducing random seed dependence of nonuniform sampling schedules, but still require the specification of a seed number. This work formalizes the use of subrandom number sequences in nonuniform sampling as a means of seed-independent sampling, and compares the performance of three subrandom methods to their pseudorandom counterparts using commonly applied schedule performance metrics. Reconstruction results using experimental datasets are also provided to validate claims made using these performance metrics. Copyright © 2016 Elsevier Inc. All rights reserved.

  13. Nonquasineutral electron vortices in nonuniform plasmas

    Energy Technology Data Exchange (ETDEWEB)

    Angus, J. R.; Richardson, A. S.; Swanekamp, S. B.; Schumer, J. W. [Plasma Physics Division, Naval Research Laboratory, Washington, District of Columbia 20375 (United States); Ottinger, P. F. [Engility Corporation, Chantilly, Virginia 20151 (United States)

    2014-11-15

    Electron vortices are observed in the numerical simulation of current carrying plasmas on fast time scales where the ion motion can be ignored. In plasmas with nonuniform density n, vortices drift in the B × ∇n direction with a speed that is on the order of the Hall speed. This provides a mechanism for magnetic field penetration into a plasma. Here, we consider strong vortices with rotation speeds V{sub ϕ} close to the speed of light c where the vortex size δ is on the order of the magnetic Debye length λ{sub B}=|B|/4πen and the vortex is thus nonquasineutral. Drifting vortices are typically studied using the electron magnetohydrodynamic model (EMHD), which ignores the displacement current and assumes quasineutrality. However, these assumptions are not strictly valid for drifting vortices when δ ≈ λ{sub B}. In this paper, 2D electron vortices in nonuniform plasmas are studied for the first time using a fully electromagnetic, collisionless fluid code. Relatively large amplitude oscillations with periods that correspond to high frequency extraordinary modes are observed in the average drift speed. The drift speed W is calculated by averaging the electron velocity field over the vorticity. Interestingly, the time-averaged W from these simulations matches very well with W from the much simpler EMHD simulations even for strong vortices with order unity charge density separation.

  14. High-order nonuniformly correlated beams

    Science.gov (United States)

    Wu, Dan; Wang, Fei; Cai, Yangjian

    2018-02-01

    We have introduced a class of partially coherent beams with spatially varying correlations named high-order nonuniformly correlated (HNUC) beams, as an extension of conventional nonuniformly correlated (NUC) beams. Such beams bring a new parameter (mode order) which is used to tailor the spatial coherence properties. The behavior of the spectral density of the HNUC beams on propagation has been investigated through numerical examples with the help of discrete model decomposition and fast Fourier transform (FFT) algorithm. Our results reveal that by selecting the mode order appropriately, the more sharpened intensity maxima can be achieved at a certain propagation distance compared to that of the NUC beams, and the lateral shift of the intensity maxima on propagation is closed related to the mode order. Furthermore, analytical expressions for the r.m.s width and the propagation factor of the HNUC beams on free-space propagation are derived by means of Wigner distribution function. The influence of initial beam parameters on the evolution of the r.m.s width and the propagation factor, and the relation between the r.m.s width and the occurring of the sharpened intensity maxima on propagation have been studied and discussed in detail.

  15. Downsampling Non-Uniformly Sampled Data

    Directory of Open Access Journals (Sweden)

    Fredrik Gustafsson

    2007-10-01

    Full Text Available Decimating a uniformly sampled signal a factor D involves low-pass antialias filtering with normalized cutoff frequency 1/D followed by picking out every Dth sample. Alternatively, decimation can be done in the frequency domain using the fast Fourier transform (FFT algorithm, after zero-padding the signal and truncating the FFT. We outline three approaches to decimate non-uniformly sampled signals, which are all based on interpolation. The interpolation is done in different domains, and the inter-sample behavior does not need to be known. The first one interpolates the signal to a uniformly sampling, after which standard decimation can be applied. The second one interpolates a continuous-time convolution integral, that implements the antialias filter, after which every Dth sample can be picked out. The third frequency domain approach computes an approximate Fourier transform, after which truncation and IFFT give the desired result. Simulations indicate that the second approach is particularly useful. A thorough analysis is therefore performed for this case, using the assumption that the non-uniformly distributed sampling instants are generated by a stochastic process.

  16. Liquid Crystal Microlens Using Nanoparticle-Induced Vertical Alignment

    Directory of Open Access Journals (Sweden)

    Shug-June Hwang

    2015-01-01

    Full Text Available The nanoparticle-induced vertical alignment (NIVA of the nematic liquid crystals (LC is applied to achieve an adaptive flat LC microlens with hybrid-aligned nematic (HAN mode by dropping polyhedral oligomeric silsesquioxane (POSS nanoparticle solution on a homogeneous alignment layer. The vertical alignment induced by the POSS nanoparticles resulted in the formation of a hybrid-aligned LC layer with concentric nonuniform distribution of the refractive index in the planar LC cell, which subsequently played the role of the lens, even in the absence of any applied voltages. The dimensions of the concentric HAN structure significantly depend on the volume of the microdroplet and the POSS concentration. The focus effect of this flat microlens was observed while electrically controlling its focal length using the applied voltages from −50 mm to −90 mm.

  17. A stability criterion for HNFDE with non-uniform delays

    International Nuclear Information System (INIS)

    Liu Xingwen; Zhong Shouming; Zhang Fengli

    2005-01-01

    Stability of functional differential equations (FDE) is an increasingly important problem in both science and engineering. Delays, whether uniform or non-uniform, play an important role in the dynamics of a system. Since non-uniform delay is more general and less focused than uniform delay, this paper concentrates on the stability of high-order neutral functional differential equations (HNFDE) with non-uniform delay, and proposes a sufficient condition for it. This result may be widely helpful, thanks to the frequent emergence of a HNFDE with non-uniform delay in various fields. Its effectiveness is illustrated by some examples

  18. Nonuniform radiation damage in permanent magnet quadrupoles.

    Science.gov (United States)

    Danly, C R; Merrill, F E; Barlow, D; Mariam, F G

    2014-08-01

    We present data that indicate nonuniform magnetization loss due to radiation damage in neodymium-iron-boron Halbach-style permanent magnet quadrupoles. The proton radiography (pRad) facility at Los Alamos uses permanent-magnet quadrupoles for magnifying lenses, and a system recently commissioned at GSI-Darmsdadt uses permanent magnets for its primary lenses. Large fluences of spallation neutrons can be produced in close proximity to these magnets when the proton beam is, intentionally or unintentionally, directed into the tungsten beam collimators; imaging experiments at LANL's pRad have shown image degradation with these magnetic lenses at proton beam doses lower than those expected to cause damage through radiation-induced reduction of the quadrupole strength alone. We have observed preferential degradation in portions of the permanent magnet quadrupole where the field intensity is highest, resulting in increased high-order multipole components.

  19. Nonuniform radiation damage in permanent magnet quadrupoles

    International Nuclear Information System (INIS)

    Danly, C. R.; Merrill, F. E.; Barlow, D.; Mariam, F. G.

    2014-01-01

    We present data that indicate nonuniform magnetization loss due to radiation damage in neodymium-iron-boron Halbach-style permanent magnet quadrupoles. The proton radiography (pRad) facility at Los Alamos uses permanent-magnet quadrupoles for magnifying lenses, and a system recently commissioned at GSI-Darmsdadt uses permanent magnets for its primary lenses. Large fluences of spallation neutrons can be produced in close proximity to these magnets when the proton beam is, intentionally or unintentionally, directed into the tungsten beam collimators; imaging experiments at LANL’s pRad have shown image degradation with these magnetic lenses at proton beam doses lower than those expected to cause damage through radiation-induced reduction of the quadrupole strength alone. We have observed preferential degradation in portions of the permanent magnet quadrupole where the field intensity is highest, resulting in increased high-order multipole components

  20. Nonuniform radiation damage in permanent magnet quadrupoles

    Energy Technology Data Exchange (ETDEWEB)

    Danly, C. R.; Merrill, F. E.; Barlow, D.; Mariam, F. G. [Los Alamos National Laboratory, Los Alamos, New Mexico 87544 (United States)

    2014-08-15

    We present data that indicate nonuniform magnetization loss due to radiation damage in neodymium-iron-boron Halbach-style permanent magnet quadrupoles. The proton radiography (pRad) facility at Los Alamos uses permanent-magnet quadrupoles for magnifying lenses, and a system recently commissioned at GSI-Darmsdadt uses permanent magnets for its primary lenses. Large fluences of spallation neutrons can be produced in close proximity to these magnets when the proton beam is, intentionally or unintentionally, directed into the tungsten beam collimators; imaging experiments at LANL’s pRad have shown image degradation with these magnetic lenses at proton beam doses lower than those expected to cause damage through radiation-induced reduction of the quadrupole strength alone. We have observed preferential degradation in portions of the permanent magnet quadrupole where the field intensity is highest, resulting in increased high-order multipole components.

  1. Flexible RF filter using a nonuniform SCISSOR.

    Science.gov (United States)

    Zhuang, Leimeng

    2016-03-15

    This work presents a flexible radiofrequency (RF) filter using an integrated microwave photonic circuit that comprises a nonuniform side-coupled integrated spaced sequence of resonators (N-SCISSOR). The filter passband can be reconfigured by varying the N-SCISSOR parameters. When employing a dual-parallel Mach-Zechnder modulator, the filter is also able to perform frequency down-conversion. In the experiment, various filter response shapes are shown, ranging from a flat-top band-pass filter to a total opposite high-rejection (>40  dB) notch filter, with a frequency coverage of greater than two octaves. The frequency down-conversion function is also demonstrated.

  2. Nonuniformity mitigation of beam illumination in heavy ion inertial fusion

    International Nuclear Information System (INIS)

    Kawata, S; Noguchi, K; Suzuki, T; Kurosaki, T; Barada, D; Ogoyski, A I; Zhang, W; Xie, J; Zhang, H; Dai, D

    2014-01-01

    In inertial fusion, a target DT fuel should be compressed to typically 1000 times the solid density. The target implosion nonuniformity is introduced by a driver beam’s illumination nonuniformity, for example. The target implosion should be robust against the implosion nonuniformities. In this paper, the requirement for implosion uniformity is first discussed. The implosion non-uniformity should be less than a few percent. The implosion dynamics is also briefly reviewed in heavy ion inertial fusion (HIF). Heavy ions deposit their energy inside the target energy absorber, and the energy deposition layer is rather thick, depending on the ion particle energy. Then nonuniformity mitigation mechanisms of the heavy ion beam (HIB) illumination in HIF are discussed. A density valley appears in the energy absorber, and the large-scale density valley also works as a radiation energy confinement layer, which contributes to a radiation energy smoothing. In HIF, wobbling heavy ion beam illumination was also introduced to realize a uniform implosion. The wobbling HIB axis oscillation is precisely controlled. In the wobbling HIBs’ illumination, the illumination nonuniformity oscillates in time and space on an HIF target. The oscillating-HIB energy deposition may contribute to the reduction of the HIBs’ illumination nonuniformity by its smoothing effect on the HIB illumination nonuniformity and also by a growth mitigation effect on the Rayleigh–Taylor instability. (invited comment)

  3. DNA replication and cancer

    DEFF Research Database (Denmark)

    Boyer, Anne-Sophie; Walter, David; Sørensen, Claus Storgaard

    2016-01-01

    A dividing cell has to duplicate its DNA precisely once during the cell cycle to preserve genome integrity avoiding the accumulation of genetic aberrations that promote diseases such as cancer. A large number of endogenous impacts can challenge DNA replication and cells harbor a battery of pathways...... causing DNA replication stress and genome instability. Further, we describe cellular and systemic responses to these insults with a focus on DNA replication restart pathways. Finally, we discuss the therapeutic potential of exploiting intrinsic replicative stress in cancer cells for targeted therapy....

  4. Replicating animal mitochondrial DNA

    Directory of Open Access Journals (Sweden)

    Emily A. McKinney

    2013-01-01

    Full Text Available The field of mitochondrial DNA (mtDNA replication has been experiencing incredible progress in recent years, and yet little is certain about the mechanism(s used by animal cells to replicate this plasmid-like genome. The long-standing strand-displacement model of mammalian mtDNA replication (for which single-stranded DNA intermediates are a hallmark has been intensively challenged by a new set of data, which suggests that replication proceeds via coupled leading-and lagging-strand synthesis (resembling bacterial genome replication and/or via long stretches of RNA intermediates laid on the mtDNA lagging-strand (the so called RITOLS. The set of proteins required for mtDNA replication is small and includes the catalytic and accessory subunits of DNA polymerase y, the mtDNA helicase Twinkle, the mitochondrial single-stranded DNA-binding protein, and the mitochondrial RNA polymerase (which most likely functions as the mtDNA primase. Mutations in the genes coding for the first three proteins are associated with human diseases and premature aging, justifying the research interest in the genetic, biochemical and structural properties of the mtDNA replication machinery. Here we summarize these properties and discuss the current models of mtDNA replication in animal cells.

  5. Who Needs Replication?

    Science.gov (United States)

    Porte, Graeme

    2013-01-01

    In this paper, the editor of a recent Cambridge University Press book on research methods discusses replicating previous key studies to throw more light on their reliability and generalizability. Replication research is presented as an accepted method of validating previous research by providing comparability between the original and replicated…

  6. Aligning the unalignable: bacteriophage whole genome alignments.

    Science.gov (United States)

    Bérard, Sèverine; Chateau, Annie; Pompidor, Nicolas; Guertin, Paul; Bergeron, Anne; Swenson, Krister M

    2016-01-13

    In recent years, many studies focused on the description and comparison of large sets of related bacteriophage genomes. Due to the peculiar mosaic structure of these genomes, few informative approaches for comparing whole genomes exist: dot plots diagrams give a mostly qualitative assessment of the similarity/dissimilarity between two or more genomes, and clustering techniques are used to classify genomes. Multiple alignments are conspicuously absent from this scene. Indeed, whole genome aligners interpret lack of similarity between sequences as an indication of rearrangements, insertions, or losses. This behavior makes them ill-prepared to align bacteriophage genomes, where even closely related strains can accomplish the same biological function with highly dissimilar sequences. In this paper, we propose a multiple alignment strategy that exploits functional collinearity shared by related strains of bacteriophages, and uses partial orders to capture mosaicism of sets of genomes. As classical alignments do, the computed alignments can be used to predict that genes have the same biological function, even in the absence of detectable similarity. The Alpha aligner implements these ideas in visual interactive displays, and is used to compute several examples of alignments of Staphylococcus aureus and Mycobacterium bacteriophages, involving up to 29 genomes. Using these datasets, we prove that Alpha alignments are at least as good as those computed by standard aligners. Comparison with the progressive Mauve aligner - which implements a partial order strategy, but whose alignments are linearized - shows a greatly improved interactive graphic display, while avoiding misalignments. Multiple alignments of whole bacteriophage genomes work, and will become an important conceptual and visual tool in comparative genomics of sets of related strains. A python implementation of Alpha, along with installation instructions for Ubuntu and OSX, is available on bitbucket (https://bitbucket.org/thekswenson/alpha).

  7. Long GRBs sources population non-uniformity

    Science.gov (United States)

    Arkhangelskaja, Irene

    Long GRBs observed in the very wide energy band. It is possible to separate two subsets of GRBs with high energy component (E > 500 MeV) presence. First type events energy spectra in low and high energy intervals are similar (as for GRB 021008) and described by Band, power law or broken power law models look like to usual bursts without emission in tens MeV region. For example, Band spectrum of GRB080916C covering 6 orders of magnitude. Second ones contain new additional high energy spectral component (for example, GRB 050525B and GRB 090902B). Both types of GRBs observed since CGRO mission beginning. The low energy precursors existence are typical for all types bursts. Both types of bursts temporal profiles can be similar in the various energy regions during some events or different in other cases. The absence of hard to soft evolution in low energy band and (or) presence of high energy precursors for some events are the special features of second class of GRBs by the results of preliminary data analysis and this facts gives opportunities to suppose differences between these two GRBs subsets sources. Also the results of long GRB redshifts distribution analysis have shown its shape contradiction to uniform population objects one for our Metagalaxy to both total and various redshifts definition methods GRBs sources samples. These evidences allow making preliminary conclusion about non-uniformity of long GRBs sources population.

  8. Flexural Free Vibrations of Multistep Nonuniform Beams

    Directory of Open Access Journals (Sweden)

    Guojin Tan

    2016-01-01

    Full Text Available This paper presents an exact approach to investigate the flexural free vibrations of multistep nonuniform beams. Firstly, one-step beam with moment of inertia and mass per unit length varying as I(x=α11+βxr+4 and m(x=α21+βxr was studied. By using appropriate transformations, the differential equation for flexural free vibration of one-step beam with variable cross section is reduced to a four-order differential equation with constant coefficients. According to different types of roots for the characteristic equation of four-order differential equation with constant coefficients, two kinds of modal shape functions are obtained, and the general solutions for flexural free vibration of one-step beam with variable cross section are presented. An exact approach to solve the natural frequencies and modal shapes of multistep beam with variable cross section is presented by using transfer matrix method, the exact general solutions of one-step beam, and iterative method. Numerical examples reveal that the calculated frequencies and modal shapes are in good agreement with the finite element method (FEM, which demonstrates the solutions of present method are exact ones.

  9. Minimum nonuniform graph partitioning with unrelated weights

    Science.gov (United States)

    Makarychev, K. S.; Makarychev, Yu S.

    2017-12-01

    We give a bi-criteria approximation algorithm for the Minimum Nonuniform Graph Partitioning problem, recently introduced by Krauthgamer, Naor, Schwartz and Talwar. In this problem, we are given a graph G=(V,E) and k numbers ρ_1,\\dots, ρ_k. The goal is to partition V into k disjoint sets (bins) P_1,\\dots, P_k satisfying \\vert P_i\\vert≤ ρi \\vert V\\vert for all i, so as to minimize the number of edges cut by the partition. Our bi-criteria algorithm gives an O(\\sqrt{log \\vert V\\vert log k}) approximation for the objective function in general graphs and an O(1) approximation in graphs excluding a fixed minor. The approximate solution satisfies the relaxed capacity constraints \\vert P_i\\vert ≤ (5+ \\varepsilon)ρi \\vert V\\vert. This algorithm is an improvement upon the O(log \\vert V\\vert)-approximation algorithm by Krauthgamer, Naor, Schwartz and Talwar. We extend our results to the case of 'unrelated weights' and to the case of 'unrelated d-dimensional weights'. A preliminary version of this work was presented at the 41st International Colloquium on Automata, Languages and Programming (ICALP 2014). Bibliography: 7 titles.

  10. High harmonic terahertz confocal gyrotron with nonuniform electron beam

    Energy Technology Data Exchange (ETDEWEB)

    Fu, Wenjie; Guan, Xiaotong; Yan, Yang [THz Research Center, School of Physical Electronics, University of Electronic Science and Technology of China, Chengdu 610054 (China)

    2016-01-15

    The harmonic confocal gyrotron with nonuniform electron beam is proposed in this paper in order to develop compact and high power terahertz radiation source. A 0.56 THz third harmonic confocal gyrotron with a dual arc section nonuniform electron beam has been designed and investigated. The studies show that confocal cavity has extremely low mode density, and has great advantage to operate at high harmonic. Nonuniform electron beam is an approach to improve output power and interaction efficiency of confocal gyrotron. A dual arc beam magnetron injection gun for designed confocal gyrotron has been developed and presented in this paper.

  11. Non-uniformity Correction of Infrared Images by Midway Equalization

    Directory of Open Access Journals (Sweden)

    Yohann Tendero

    2012-07-01

    Full Text Available The non-uniformity is a time-dependent noise caused by the lack of sensor equalization. We present here the detailed algorithm and on line demo of the non-uniformity correction method by midway infrared equalization. This method was designed to suit infrared images. Nevertheless, it can be applied to images produced for example by scanners, or by push-broom satellites. The obtained single image method works on static images, is fully automatic, having no user parameter, and requires no registration. It needs no camera motion compensation, no closed aperture sensor equalization and is able to correct for a fully non-linear non-uniformity.

  12. Registered Replication Report

    DEFF Research Database (Denmark)

    Bouwmeester, S.; Verkoeijen, P. P.J.L.; Aczel, B.

    2017-01-01

    and colleagues. The results of studies using time pressure have been mixed, with some replication attempts observing similar patterns (e.g., Rand et al., 2014) and others observing null effects (e.g., Tinghög et al., 2013; Verkoeijen & Bouwmeester, 2014). This Registered Replication Report (RRR) assessed...... the size and variability of the effect of time pressure on cooperative decisions by combining 21 separate, preregistered replications of the critical conditions from Study 7 of the original article (Rand et al., 2012). The primary planned analysis used data from all participants who were randomly assigned...

  13. The replication recipe : What makes for a convincing replication?

    NARCIS (Netherlands)

    Brandt, M.J.; IJzerman, H.; Dijksterhuis, Ap; Farach, Frank J.; Geller, Jason; Giner-Sorolla, Roger; Grange, James A.; Perugini, Marco; Spies, Jeffrey R.; van 't Veer, Anna

    Psychological scientists have recently started to reconsider the importance of close replications in building a cumulative knowledge base; however, there is no consensus about what constitutes a convincing close replication study. To facilitate convincing close replication attempts we have developed

  14. The Replication Recipe: What makes for a convincing replication?

    NARCIS (Netherlands)

    Brandt, M.J.; IJzerman, H.; Dijksterhuis, A.J.; Farach, F.J.; Geller, J.; Giner-Sorolla, R.; Grange, J.A.; Perugini, M.; Spies, J.R.; Veer, A. van 't

    2014-01-01

    Psychological scientists have recently started to reconsider the importance of close replications in building a cumulative knowledge base; however, there is no consensus about what constitutes a convincing close replication study. To facilitate convincing close replication attempts we have developed

  15. Eukaryotic DNA Replication Fork.

    Science.gov (United States)

    Burgers, Peter M J; Kunkel, Thomas A

    2017-06-20

    This review focuses on the biogenesis and composition of the eukaryotic DNA replication fork, with an emphasis on the enzymes that synthesize DNA and repair discontinuities on the lagging strand of the replication fork. Physical and genetic methodologies aimed at understanding these processes are discussed. The preponderance of evidence supports a model in which DNA polymerase ε (Pol ε) carries out the bulk of leading strand DNA synthesis at an undisturbed replication fork. DNA polymerases α and δ carry out the initiation of Okazaki fragment synthesis and its elongation and maturation, respectively. This review also discusses alternative proposals, including cellular processes during which alternative forks may be utilized, and new biochemical studies with purified proteins that are aimed at reconstituting leading and lagging strand DNA synthesis separately and as an integrated replication fork.

  16. Modeling DNA Replication.

    Science.gov (United States)

    Bennett, Joan

    1998-01-01

    Recommends the use of a model of DNA made out of Velcro to help students visualize the steps of DNA replication. Includes a materials list, construction directions, and details of the demonstration using the model parts. (DDR)

  17. Chromatin Immunoprecipitation of Replication Factors Moving with the Replication Fork

    OpenAIRE

    Rapp, Jordan B.; Ansbach, Alison B.; Noguchi, Chiaki; Noguchi, Eishi

    2009-01-01

    Replication of chromosomes involves a variety of replication proteins including DNA polymerases, DNA helicases, and other accessory factors. Many of these proteins are known to localize at replication forks and travel with them as components of the replisome complex. Other proteins do not move with replication forks but still play an essential role in DNA replication. Therefore, in order to understand the mechanisms of DNA replication and its controls, it is important to examine localization ...

  18. Design of Nonuniform Filter Bank Transceivers for Frequency Selective Channels

    Directory of Open Access Journals (Sweden)

    Yuan-Pei Lin

    2007-01-01

    Full Text Available In recent years, there has been considerable interest in the theory and design of filter bank transceivers due to their superior frequency response. In many applications, it is desired to have transceivers that can support multiple services with different incoming data rates and different quality-of-service requirements. To meet these requirements, we can either do resource allocation or design transceivers with a nonuniform bandwidth partition. In this paper, we propose a method for the design of nonuniform filter bank transceivers for frequency selective channels. Both frequency response and signal-to-interference ratio (SIR can be incorporated in the transceiver design. Moreover, the technique can be extended to the case of nonuniform filter bank transceivers with rational sampling factors. Simulation results show that nonuniform filter bank transceivers with good filter responses as well as high SIR can be obtained by the proposed design method.

  19. Pattern of diffusion-limited aggregation on nonuniform substrate

    CERN Document Server

    Ouyang Wen Ze; Zou Xian Wu; Jin Zhun Zhi

    2003-01-01

    Pattern of diffusion-limited aggregation (DLA) on nonuniform substrate was investigated by computer simulations. The nonuniform substrates are represented by Leath percolations with the probability p. p stands for the degree of nonuniformity and takes values in the range p sub c<=p<=1, where p sub c is the threshold of percolation. The DLA cluster grows up on the Leath percolation substrate. The patterns of the DLA clusters appear asymmetrical and nonuniform, and the branches are relative few for the case p is close to p sub c. In addition, the pattern depends on the shape of substrate. As p increases from p sub c to 1, cluster changes to pure DLA gradually. Correspondingly, the fractal dimension increases from 1.46 to 1.68. Also, the random walks on Leath percolations through the range p sub c<=p<=1 were examined. Our simulations show the Honda-Toyoki-Matsushita relation is still reasonable for fractional dimensional systems.

  20. Non-uniform sampling of NMR relaxation data

    DEFF Research Database (Denmark)

    Schwarz-Linnet, Troels; Teilum, Kaare

    2016-01-01

    The use of non-uniform sampling of NMR spectra may give significant reductions in the data acquisition time. For quantitative experiments such as the measurement of spin relaxation rates, non-uniform sampling is however not widely used as inaccuracies in peak intensities may lead to errors...... in the extracted dynamic parameters. By systematic reducing the coverage of the Nyquist grid of (15)N Carr-Purcell-Meiboom-Gill (CPMG) relaxation dispersion datasets for four different proteins and performing a full data analysis of the resulting non-uniform sampled datasets, we have compared the performance...... of the multi-dimensional decomposition and iterative re-weighted least-squares algorithms in reconstructing spectra with accurate peak intensities. As long as a single fully sampled spectrum is included in a series of otherwise non-uniform sampled two-dimensional spectra, multi-dimensional decomposition...

  1. Charged particle acceleration in nonuniform plasmas

    International Nuclear Information System (INIS)

    Bulanov, S.V.; Naumova, N.M.; Pegoraro, F.

    1996-11-01

    The high-gradient electron acceleration schemes that have been demonstrated using LWFA appear promising for the development of plasma-based laser accelerators into practical devices. However, a question still exists: how to avoid the wake field deterioration and the loss of the phase synchronism between the plasma wave and the electrons that prevent them from being accelerated up to the theoretical limit. In order to obtain the highest possible values of the wake electric field one must use as intense laser pulses as possible i.e., pulses with dimensionless amplitudes a much-gt 1. Pulses that have a dimensionless amplitude larger than one tend to be subject to a host of instabilities, such as relativistic self-focusing, self modulation and stimulated Raman scattering, that affect their propagation in the plasma. Such processes could be beneficial, in so far as they increase the pulse energy density, enhance the wake field generation, and provide the mechanism for transporting the laser radiation over several Rayleigh lengths without diffraction spreading. However, it is still far from certain that these processes can be exploited in a controlled form and can lead to regular, stationary wake fields. It is known that, in order to create good quality wake fields, it would be preferable to use laser pulses with steep fronts of order λ p . The present paper aims at analyzing the influence of the laser pulse shape and of the plasma nonuniformity on the charged particle acceleration. This study is based on the results obtained with one dimensional PIC simulations

  2. Compensation for nonuniform attenuation in SPECT brain imaging

    International Nuclear Information System (INIS)

    Glick, S.J.; King, M.A.; Pan, T.S.; Soares, E.J.

    1996-01-01

    Accurate compensation for photon attenuation is needed to perform quantitative brain single-photon-emission computed tomographic (SPECT) imaging. Bellini's attenuation-compensation method has been used with a nonuniform attenuation map to account for the nonuniform attenuation properties of the head. Simulation studies using a three-dimensional (3-D) digitized anthropomorphic brain phantom were conducted to compare quantitative accuracy of reconstructions obtained with the nonuniform Bellini method to that obtained with the Chang method and to iterative reconstruction using maximum-likelihood expectation maximization (ML-EM). Using the Chang method and assuming the head to be a uniform attenuator gave reconstructions with an average bias of approximately 6-8%, whereas using the Bellini or the iterative ML-EM method with a nonuniform attenuation map gave an average bias of approximately 1%. The computation time required to implement nonuniform attenuation compensation with the Bellini algorithm is approximately equivalent to the time required to perform one iteration of ML-EM. Thus, using the Bellini method with a nonuniform attenuation map provides accurate compensation for photon attenuation within the head, and the method can be implemented in computation times suitable for routine clinical use

  3. Chromosomal context and replication properties of ARS plasmids in ...

    Indian Academy of Sciences (India)

    2015-11-28

    Nov 28, 2015 ... plasmid but only a subset of them functions as replication origins in their ... except that they are rich in A + T content (As on one strand and Ts .... different unique, terminal, PCR-generated restriction sites used for cloning each fragment are ..... Hall TA 1999 BioEdit: a user-friendly biological sequence align-.

  4. Centrifugal pumping during Czochralski silicon growth with a strong, non-uniform, axisymmetric magnetic field

    Science.gov (United States)

    Khine, Y. Y.; Walker, J. S.

    1996-08-01

    Centrifugal pumping flows are produced in the melt by the rotations of crystal and crucible during the Czochralski growth of silicon crystals. This paper treats the centrifugal pumping effects with a steady, strong, non-uniform axisymmetric magnetic field. We consider a family of magnetic fields ranging from a uniform axial field to a "cusp" field, which has a purely radial field at the crystal-melt interface and free surface. We present the numerical solutions for the centrifugal pumping flows as the magnetic field is changed continuously from a uniform axial field to a cusp one, and for arbitrary Hartmann number. Since the perfect alignment between the local magnetic field vector and the crystal-melt interface or free surface is not likely, we also investigate the effects of a slight misalignment.

  5. Buoyant convection during Czochralski silicon growth with a strong, non-uniform, axisymmetric magnetic field

    Science.gov (United States)

    Khine, Y. Y.; Walker, J. S.

    1995-02-01

    This paper treats the buoyant convection during the Czochralski growth of silicon crystals with a steady, strong, non-uniform, axisymmetric magnetic field. We consider a family of magnetic fields which includes a uniform axial magnetic field and a "cusp" field which is produced by identical solenoids placed symmetrically above and below the plane of the crystal-melt interface and free surface. We investigate the evolution of the buoyant convection as the magnetic field is changed continuously from a uniform axial field to a cusp field, with a constant value of the root-mean-squared magnetic flux density in the melt. We also investigate changes as the magnetic flux density is increased. While the cusp field appears very promising, perfect alignment between the local magnetic field vector and the crystal-melt interface or free surface is not possible, so the effects of a slight misalignment are also investigated.

  6. Nonunique and nonuniform mapping in few-body Coulomb-explosion imaging

    Science.gov (United States)

    Sayler, A. M.; Eckner, E.; McKenna, J.; Esry, B. D.; Carnes, K. D.; Ben-Itzhak, I.; Paulus, G. G.

    2018-03-01

    Much of our knowledge of molecular geometry and interaction dynamics comes from indirect measurements of the molecular fragments following breakup. This technique—Coulomb-explosion imaging (CEI), i.e., determining the initial molecular configuration of a system from the momenta of the resulting fragments using knowledge of the particle interactions—is one of the fundamental tools of molecular physics. Moreover, CEI has been a staple of molecular studies for decades. Here we show that one often cannot assign a unique initial configuration to the few-body breakup of a polyatomic molecule given the measurement of the resulting fragments' momenta. Specifically, multiple initial configurations can result in identical momenta for a molecule breaking into three or more parts. Further, the nonunique and nonuniform mapping from the initial configuration to the measured momenta also significantly complicates the determination of molecular alignment at the time of breakup.

  7. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez.

    Since June of 2009, the muon alignment group has focused on providing new alignment constants and on finalizing the hardware alignment reconstruction. Alignment constants for DTs and CSCs were provided for CRAFT09 data reprocessing. For DT chambers, the track-based alignment was repeated using CRAFT09 cosmic ray muons and validated using segment extrapolation and split cosmic tools. One difference with respect to the previous alignment is that only five degrees of freedom were aligned, leaving the rotation around the local x-axis to be better determined by the hardware system. Similarly, DT chambers poorly aligned by tracks (due to limited statistics) were aligned by a combination of photogrammetry and hardware-based alignment. For the CSC chambers, the hardware system provided alignment in global z and rotations about local x. Entire muon endcap rings were further corrected in the transverse plane (global x and y) by the track-based alignment. Single chamber track-based alignment suffers from poor statistic...

  8. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez and J. Pivarski

    2011-01-01

    Alignment efforts in the first few months of 2011 have shifted away from providing alignment constants (now a well established procedure) and focussed on some critical remaining issues. The single most important task left was to understand the systematic differences observed between the track-based (TB) and hardware-based (HW) barrel alignments: a systematic difference in r-φ and in z, which grew as a function of z, and which amounted to ~4-5 mm differences going from one end of the barrel to the other. This difference is now understood to be caused by the tracker alignment. The systematic differences disappear when the track-based barrel alignment is performed using the new “twist-free” tracker alignment. This removes the largest remaining source of systematic uncertainty. Since the barrel alignment is based on hardware, it does not suffer from the tracker twist. However, untwisting the tracker causes endcap disks (which are aligned ...

  9. Testing the Efficacy of a Tier 2 Mathematics Intervention: A Conceptual Replication Study

    Science.gov (United States)

    Doabler, Christian T.; Clarke, Ben; Kosty, Derek B.; Kurtz-Nelson, Evangeline; Fien, Hank; Smolkowski, Keith; Baker, Scott K.

    2016-01-01

    The purpose of this closely aligned conceptual replication study was to investigate the efficacy of a Tier 2 kindergarten mathematics intervention. The replication study differed from the initial randomized controlled trial on three important elements: geographical region, timing of the intervention, and instructional context of the…

  10. The progression of replication forks at natural replication barriers in live bacteria.

    Science.gov (United States)

    Moolman, M Charl; Tiruvadi Krishnan, Sriram; Kerssemakers, Jacob W J; de Leeuw, Roy; Lorent, Vincent; Sherratt, David J; Dekker, Nynke H

    2016-07-27

    Protein-DNA complexes are one of the principal barriers the replisome encounters during replication. One such barrier is the Tus-ter complex, which is a direction dependent barrier for replication fork progression. The details concerning the dynamics of the replisome when encountering these Tus-ter barriers in the cell are poorly understood. By performing quantitative fluorescence microscopy with microfuidics, we investigate the effect on the replisome when encountering these barriers in live Escherichia coli cells. We make use of an E. coli variant that includes only an ectopic origin of replication that is positioned such that one of the two replisomes encounters a Tus-ter barrier before the other replisome. This enables us to single out the effect of encountering a Tus-ter roadblock on an individual replisome. We demonstrate that the replisome remains stably bound after encountering a Tus-ter complex from the non-permissive direction. Furthermore, the replisome is only transiently blocked, and continues replication beyond the barrier. Additionally, we demonstrate that these barriers affect sister chromosome segregation by visualizing specific chromosomal loci in the presence and absence of the Tus protein. These observations demonstrate the resilience of the replication fork to natural barriers and the sensitivity of chromosome alignment to fork progression. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

  11. Evolution of Replication Machines

    Science.gov (United States)

    Yao, Nina Y.; O'Donnell, Mike E.

    2016-01-01

    The machines that decode and regulate genetic information require the translation, transcription and replication pathways essential to all living cells. Thus, it might be expected that all cells share the same basic machinery for these pathways that were inherited from the primordial ancestor cell from which they evolved. A clear example of this is found in the translation machinery that converts RNA sequence to protein. The translation process requires numerous structural and catalytic RNAs and proteins, the central factors of which are homologous in all three domains of life, bacteria, archaea and eukarya. Likewise, the central actor in transcription, RNA polymerase, shows homology among the catalytic subunits in bacteria, archaea and eukarya. In contrast, while some “gears” of the genome replication machinery are homologous in all domains of life, most components of the replication machine appear to be unrelated between bacteria and those of archaea and eukarya. This review will compare and contrast the central proteins of the “replisome” machines that duplicate DNA in bacteria, archaea and eukarya, with an eye to understanding the issues surrounding the evolution of the DNA replication apparatus. PMID:27160337

  12. Replication studies in longevity

    DEFF Research Database (Denmark)

    Varcasia, O; Garasto, S; Rizza, T

    2001-01-01

    In Danes we replicated the 3'APOB-VNTR gene/longevity association study previously carried out in Italians, by which the Small alleles (less than 35 repeats) had been identified as frailty alleles for longevity. In Danes, neither genotype nor allele frequencies differed between centenarians and 20...

  13. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2010-01-01

    The main developments in muon alignment since March 2010 have been the production, approval and deployment of alignment constants for the ICHEP data reprocessing. In the barrel, a new geometry, combining information from both hardware and track-based alignment systems, has been developed for the first time. The hardware alignment provides an initial DT geometry, which is then anchored as a rigid solid, using the link alignment system, to a reference frame common to the tracker. The “GlobalPositionRecords” for both the Tracker and Muon systems are being used for the first time, and the initial tracker-muon relative positioning, based on the link alignment, yields good results within the photogrammetry uncertainties of the Tracker and alignment ring positions. For the first time, the optical and track-based alignments show good agreement between them; the optical alignment being refined by the track-based alignment. The resulting geometry is the most complete to date, aligning all 250 DTs, ...

  14. Fast global sequence alignment technique

    KAUST Repository

    Bonny, Mohamed Talal; Salama, Khaled N.

    2011-01-01

    fast alignment algorithm, called 'Alignment By Scanning' (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the wellknown sequence alignment algorithms, the 'GAP' (which is heuristic) and the 'Needleman

  15. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Z. Szillasi and G. Gomez.

    2013-01-01

    When CMS is opened up, major components of the Link and Barrel Alignment systems will be removed. This operation, besides allowing for maintenance of the detector underneath, is needed for making interventions that will reinforce the alignment measurements and make the operation of the alignment system more reliable. For that purpose and also for their general maintenance and recalibration, the alignment components will be transferred to the Alignment Lab situated in the ISR area. For the track-based alignment, attention is focused on the determination of systematic uncertainties, which have become dominant, since now there is a large statistics of muon tracks. This will allow for an improved Monte Carlo misalignment scenario and updated alignment position errors, crucial for high-momentum muon analysis such as Z′ searches.

  16. LDPC Code Design for Nonuniform Power-Line Channels

    Directory of Open Access Journals (Sweden)

    Sanaei Ali

    2007-01-01

    Full Text Available We investigate low-density parity-check code design for discrete multitone channels over power lines. Discrete multitone channels are well modeled as nonuniform channels, that is, different bits experience various channel parameters. We propose a coding system for discrete multitone channels that allows for using a single code over a nonuniform channel. The number of code parameters for the proposed system is much greater than the number of code parameters in conventional channel. Therefore, search-based optimization methods are impractical. We first formulate the problem of optimizing the rate of an irregular low-density parity-check code, with guaranteed convergence over a general nonuniform channel, as an iterative linear programming which is significantly more efficient than search-based methods. Then we use this technique for a typical power-line channel. The methodology of this paper is directly applicable to all decoding algorithms for which a density evolution analysis is possible.

  17. Skin carcinogenesis following uniform and non-uniform β irradiation

    International Nuclear Information System (INIS)

    Charles, M.W.; Williams, J.P.; Coggle, J.E.

    1989-01-01

    Where workers or the general public may be exposed to ionising radiation, the irradiation is rarely uniform. The risk figures and dose limits recommended by the International Commission on Radiological Protection (ICRP) are based largely on clinical and epidemiological studies of reasonably uniform irradiated organs. The paucity of clinical or experimental data for highly non-uniform exposures has prevented the ICRP from providing adequate recommendations. This weakness has led on a number of occasions to the postulate that highly non-uniform exposures of organs could be 100,000 times more carcinogenic than ICRP risk figures would predict. This so-called ''hot-particle hypothesis'' found little support among reputable radiobiologists, but could not be clearly and definitively refuted on the basis of experiment. An experiment, based on skin tumour induction in mouse skin, is described which was developed to test the hypothesis. The skin of 1200 SAS/4 male mice has been exposed to a range of uniform and non-uniform sources of the β emitter 170 Tm (E max ∼ 1 MeV). Non-uniform exposures were produced using arrays of 32 or 8 2-mm diameter sources distributed over the same 8-cm 2 area as a uniform control source. Average skin doses varied from 2-100 Gy. The results for the non-uniform sources show a 30% reduction in tumour incidence by the 32-point array at the lower mean doses compared with the response from uniform sources. The eight-point array showed an order-of-magnitude reduction in tumour incidence compared to uniform irradiation at low doses. These results, in direct contradiction to the ''hot particle hypothesis'', indicate that non-uniform exposures produce significantly fewer tumours than uniform exposures. (author)

  18. Microwave interaction with nonuniform hydrogen gas in carbon nanotubes

    International Nuclear Information System (INIS)

    Babaei, S.; Babaei, Sh.

    2009-01-01

    In this paper we study the reflection, absorption, and transmission of microwave from nonuniform hydrogen gas in carbon nanotubes, grown by iron-catalyzed high-pressure carbon monoxide disproportionate (HiPco) process. A discussion on the effect of various hydrogen gas parameters on the reflected power, absorbed power, and transmitted power is presented. The nonuniform hydrogen gas slab is modeled by a series of subslabs. The overall number density profile across the whole slab follows a parabolic function. The total reflected, absorbed, and transmitted powers are then deduced and their functional dependence on the number density, collision frequency, and angle of propagation is studied

  19. Assessment indices for uniform and non-uniform thermal environments

    Institute of Scientific and Technical Information of China (English)

    2008-01-01

    Different assessment indices for thermal environments were compared and selected for proper assessment of indoor thermal environments.30 subjects reported their overall thermal sensation,thermal comfort,and thermal acceptability in uniform and non-uniform conditions.The results show that these three assessment indices provide equivalent evaluations in uniform environments.However,overall thermal sensation differs from the other two indices and cannot be used as a proper index for the evaluation of non-uniform environments.The relationship between the percentage and the mean vote for each index is established.

  20. Modeling of nonuniform corrosion in salt brines: Salt Repository Project

    International Nuclear Information System (INIS)

    Reimus, P.W.

    1988-03-01

    A mechanistic approach to modeling nonuniform corrosion in brines is presented in this report. Equations are derived for completely describing the electrochemical environment within a localized corrosion cavity, and appropriate initial and boundary conditions are invoked to obtain a solvable system of equations. The initial and boundary conditions can be adjusted to simulate pitting, crevice corrosion, or stress corrosion cracking. Although no numerical results are presented, a numerical strategy for solving the equations is presented. The report focuses on the nonuniform corrosion behavior of mild steel; however, the modeling approach presented is expected to apply to a broad range of metallic materials. 34 refs., 5 figs., 2 tabs

  1. Control rod housing alignment

    International Nuclear Information System (INIS)

    Dixon, R.C.; Deaver, G.A.; Punches, J.R.; Singleton, G.E.; Erbes, J.G.; Offer, H.P.

    1990-01-01

    This patent describes a process for measuring the vertical alignment between a hole in a core plate and the top of a corresponding control rod drive housing within a boiling water reactor. It comprises: providing an alignment apparatus. The alignment apparatus including a lower end for fitting to the top of the control rod drive housing; an upper end for fitting to the aperture in the core plate, and a leveling means attached to the alignment apparatus to read out the difference in angularity with respect to gravity, and alignment pin registering means for registering to the alignment pin on the core plate; lowering the alignment device on a depending support through a lattice position in the top guide through the hole in the core plate down into registered contact with the top of the control rod drive housing; registering the upper end to the sides of the hole in the core plate; registering the alignment pin registering means to an alignment pin on the core plate to impart to the alignment device the required angularity; and reading out the angle of the control rod drive housing with respect to the hole in the core plate through the leveling devices whereby the angularity of the top of the control rod drive housing with respect to the hole in the core plate can be determined

  2. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2010-01-01

    Most of the work in muon alignment since December 2009 has focused on the geometry reconstruction from the optical systems and improvements in the internal alignment of the DT chambers. The barrel optical alignment system has progressively evolved from reconstruction of single active planes to super-planes (December 09) to a new, full barrel reconstruction. Initial validation studies comparing this full barrel alignment at 0T with photogrammetry provide promising results. In addition, the method has been applied to CRAFT09 data, and the resulting alignment at 3.8T yields residuals from tracks (extrapolated from the tracker) which look smooth, suggesting a good internal barrel alignment with a small overall offset with respect to the tracker. This is a significant improvement, which should allow the optical system to provide a start-up alignment for 2010. The end-cap optical alignment has made considerable progress in the analysis of transfer line data. The next set of alignment constants for CSCs will there...

  3. Tidal alignment of galaxies

    Energy Technology Data Exchange (ETDEWEB)

    Blazek, Jonathan; Vlah, Zvonimir; Seljak, Uroš

    2015-08-01

    We develop an analytic model for galaxy intrinsic alignments (IA) based on the theory of tidal alignment. We calculate all relevant nonlinear corrections at one-loop order, including effects from nonlinear density evolution, galaxy biasing, and source density weighting. Contributions from density weighting are found to be particularly important and lead to bias dependence of the IA amplitude, even on large scales. This effect may be responsible for much of the luminosity dependence in IA observations. The increase in IA amplitude for more highly biased galaxies reflects their locations in regions with large tidal fields. We also consider the impact of smoothing the tidal field on halo scales. We compare the performance of this consistent nonlinear model in describing the observed alignment of luminous red galaxies with the linear model as well as the frequently used "nonlinear alignment model," finding a significant improvement on small and intermediate scales. We also show that the cross-correlation between density and IA (the "GI" term) can be effectively separated into source alignment and source clustering, and we accurately model the observed alignment down to the one-halo regime using the tidal field from the fully nonlinear halo-matter cross correlation. Inside the one-halo regime, the average alignment of galaxies with density tracers no longer follows the tidal alignment prediction, likely reflecting nonlinear processes that must be considered when modeling IA on these scales. Finally, we discuss tidal alignment in the context of cosmic shear measurements.

  4. Mechanisms of DNA replication termination.

    Science.gov (United States)

    Dewar, James M; Walter, Johannes C

    2017-08-01

    Genome duplication is carried out by pairs of replication forks that assemble at origins of replication and then move in opposite directions. DNA replication ends when converging replication forks meet. During this process, which is known as replication termination, DNA synthesis is completed, the replication machinery is disassembled and daughter molecules are resolved. In this Review, we outline the steps that are likely to be common to replication termination in most organisms, namely, fork convergence, synthesis completion, replisome disassembly and decatenation. We briefly review the mechanism of termination in the bacterium Escherichia coli and in simian virus 40 (SV40) and also focus on recent advances in eukaryotic replication termination. In particular, we discuss the recently discovered E3 ubiquitin ligases that control replisome disassembly in yeast and higher eukaryotes, and how their activity is regulated to avoid genome instability.

  5. Shape Preserving Interpolatory Subdivision Schemes for Nonuniform Data

    NARCIS (Netherlands)

    Kuijt, F.; van Damme, Rudolf M.J.

    2002-01-01

    This article is concerned with a class of shape preserving four-point subdivision schemes which are stationary and which interpolate nonuniform univariate data {(xi, fi)}. These data are functional data, i.e., xi≠xj if i≠j. Subdivision for the strictly monotone x-values is performed by a subdivision

  6. Josephson flux-flow oscillators in nonuniform microwave fields

    DEFF Research Database (Denmark)

    Salerno, Mario; Samuelsen, Mogens Rugholm

    2000-01-01

    We present a simple theory for Josephson flux-flow oscillators in the presence of nonuniform microwave fields. In particular we derive an analytical expression for the I-V characteristic of the oscillator from which we show that satellite steps are spaced around the main flux-flow resonance by only...

  7. Absolute parametric instability in a nonuniform plane plasma ...

    Indian Academy of Sciences (India)

    Abstract. The paper reports an analysis of the effect of spatial plasma nonuniformity on absolute parametric instability (API) of electrostatic waves in magnetized plane waveguides subjected to an intense high-frequency (HF) electric field using the separation method. In this case the effect of strong static magnetic field is ...

  8. Absolute parametric instability in a nonuniform plane plasma

    Indian Academy of Sciences (India)

    The paper reports an analysis of the effect of spatial plasma nonuniformity on absolute parametric instability (API) of electrostatic waves in magnetized plane waveguides subjected to an intense high-frequency (HF) electric field using the separation method. In this case the effect of strong static magnetic field is considered.

  9. Instruction sequences and non-uniform complexity theory

    NARCIS (Netherlands)

    Bergstra, J.A.; Middelburg, C.A.

    2008-01-01

    We develop theory concerning non-uniform complexity in a setting in which the notion of single-pass instruction sequence considered in program algebra is the central notion. We define counterparts of the complexity classes P/poly and NP/poly and formulate a counterpart of the complexity theoretic

  10. Chromatin replication and epigenome maintenance

    DEFF Research Database (Denmark)

    Alabert, Constance; Groth, Anja

    2012-01-01

    Stability and function of eukaryotic genomes are closely linked to chromatin structure and organization. During cell division the entire genome must be accurately replicated and the chromatin landscape reproduced on new DNA. Chromatin and nuclear structure influence where and when DNA replication...... initiates, whereas the replication process itself disrupts chromatin and challenges established patterns of genome regulation. Specialized replication-coupled mechanisms assemble new DNA into chromatin, but epigenome maintenance is a continuous process taking place throughout the cell cycle. If DNA...

  11. Replication Research and Special Education

    Science.gov (United States)

    Travers, Jason C.; Cook, Bryan G.; Therrien, William J.; Coyne, Michael D.

    2016-01-01

    Replicating previously reported empirical research is a necessary aspect of an evidence-based field of special education, but little formal investigation into the prevalence of replication research in the special education research literature has been conducted. Various factors may explain the lack of attention to replication of special education…

  12. Nonuniform grid implicit spatial finite difference method for acoustic wave modeling in tilted transversely isotropic media

    KAUST Repository

    Chu, Chunlei; Stoffa, Paul L.

    2012-01-01

    sampled models onto vertically nonuniform grids. We use a 2D TTI salt model to demonstrate its effectiveness and show that the nonuniform grid implicit spatial finite difference method can produce highly accurate seismic modeling results with enhanced

  13. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    Since December, the muon alignment community has focused on analyzing the data recorded so far in order to produce new DT and CSC Alignment Records for the second reprocessing of CRAFT data. Two independent algorithms were developed which align the DT chambers using global tracks, thus providing, for the first time, a relative alignment of the barrel with respect to the tracker. These results are an important ingredient for the second CRAFT reprocessing and allow, for example, a more detailed study of any possible mis-modelling of the magnetic field in the muon spectrometer. Both algorithms are constructed in such a way that the resulting alignment constants are not affected, to first order, by any such mis-modelling. The CSC chambers have not yet been included in this global track-based alignment due to a lack of statistics, since only a few cosmics go through the tracker and the CSCs. A strategy exists to align the CSCs using the barrel as a reference until collision tracks become available. Aligning the ...

  14. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    2011-01-01

    The Muon Alignment work now focuses on producing a new track-based alignment with higher track statistics, making systematic studies between the results of the hardware and track-based alignment methods and aligning the barrel using standalone muon tracks. Currently, the muon track reconstruction software uses a hardware-based alignment in the barrel (DT) and a track-based alignment in the endcaps (CSC). An important task is to assess the muon momentum resolution that can be achieved using the current muon alignment, especially for highly energetic muons. For this purpose, cosmic ray muons are used, since the rate of high-energy muons from collisions is very low and the event statistics are still limited. Cosmics have the advantage of higher statistics in the pT region above 100 GeV/c, but they have the disadvantage of having a mostly vertical topology, resulting in a very few global endcap muons. Only the barrel alignment has therefore been tested so far. Cosmic muons traversing CMS from top to bottom are s...

  15. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Gervasio Gomez

    The main progress of the muon alignment group since March has been in the refinement of both the track-based alignment for the DTs and the hardware-based alignment for the CSCs. For DT track-based alignment, there has been significant improvement in the internal alignment of the superlayers inside the DTs. In particular, the distance between superlayers is now corrected, eliminating the residual dependence on track impact angles, and good agreement is found between survey and track-based corrections. The new internal geometry has been approved to be included in the forthcoming reprocessing of CRAFT samples. The alignment of DTs with respect to the tracker using global tracks has also improved significantly, since the algorithms use the latest B-field mapping, better run selection criteria, optimized momentum cuts, and an alignment is now obtained for all six degrees of freedom (three spatial coordinates and three rotations) of the aligned DTs. This work is ongoing and at a stage where we are trying to unders...

  16. A method for real time detecting of non-uniform magnetic field

    Science.gov (United States)

    Marusenkov, Andriy

    2015-04-01

    The principle of measuring magnetic signatures for observing diverse objects is widely used in Near Surface work (unexploded ordnance (UXO); engineering & environmental; archaeology) and security and vehicle detection systems as well. As a rule, the magnitude of the signals to be measured is much lower than that of the quasi-uniform Earth magnetic field. Usually magnetometers for these purposes contain two or more spatially separated sensors to estimate the full tensor gradient of the magnetic field or, more frequently, only partial gradient components. The both types (scalar and vector) of magnetic sensors could be used. The identity of the scale factors and proper alignment of the sensitivity axes of the vector sensors are very important for deep suppression of the ambient field and detection of weak target signals. As a rule, the periodical calibration procedure is used to keep matching sensors' parameters as close as possible. In the present report we propose the technique for detection magnetic anomalies, which is almost insensitive to imperfect matching of the sensors. This method based on the idea that the difference signals between two sensors are considerably different when the instrument is rotated or moved in uniform and non-uniform fields. Due to the misfit of calibration parameters the difference signal observed at the rotation in the uniform field is similar to the total signal - the sum of the signals of both sensors. Zero change of the difference and total signals is expected, if the instrument moves in the uniform field along a straight line. In contrast, the same move in the non-uniform field produces some response of each of the sensors. In case one measures dB/dx and moves along x direction, the sensors signals is shifted in time with the lag proportional to the distance between sensors and the speed of move. It means that the difference signal looks like derivative of the total signal at move in the non-uniform field. So, using quite simple

  17. Impact of Information Technology Governance Structures on Strategic Alignment

    Science.gov (United States)

    Gordon, Fitzroy R.

    2013-01-01

    This dissertation is a study of the relationship between Information Technology (IT) strategic alignment and IT governance structure within the organization. This dissertation replicates Asante (2010) among a different population where the prior results continue to hold, the non-experimental approach explored two research questions but include two…

  18. Spontaneous formation of non-uniform double helices for elastic rods under torsion

    International Nuclear Information System (INIS)

    Li, Hongyuan; Zhao, Shumin; Xia, Minggang; He, Siyu; Yang, Qifan; Yan, Yuming; Zhao, Hanqiao

    2017-01-01

    The spontaneous formation of double helices for filaments under torsion is common and significant. For example, the research on the supercoiling of DNA is helpful for understanding the replication and transcription of DNA. Similar double helices can appear in carbon nanotube yarns, cables, telephone wires and so forth. We noticed that non-uniform double helices can be produced due to the surface friction induced by the self-contact. Therefore an ideal model was presented to investigate the formation of double helices for elastic rods under torque. A general equilibrium condition which is valid for both the smooth surface and the rough surface situations is derived by using the variational method. By adding further constraints, the smooth and rough surface situations are investigated in detail respectively. Additionally, the model showed that the specific process of how to twist and slack the rod can determine the surface friction and hence influence the configuration of the double helix formed by rods with rough surfaces. Based on this principle, a method of manufacturing double helices with designed configurations was proposed and demonstrated. Finally, experiments were performed to verify the model and the results agreed well with the theory. - Highlights: • An ideal model is conceived to investigate the spontaneous formation of double helices for rods under torsion. • Variational method is used to obtain a universal result for the double helix formation process • Self-contact and surface friction is considered to analyze the non-uniform double helix. • A novel method of producing double helix with arbitrary configuration is proposed and demonstrated. • The experiment results agree well with the theory.

  19. Spontaneous formation of non-uniform double helices for elastic rods under torsion

    Energy Technology Data Exchange (ETDEWEB)

    Li, Hongyuan [Department of Applied Physics, School of Science, Xi' an Jiaotong University, Shaanxi 710049 (China); Zhao, Shumin, E-mail: zhaosm@mail.xjtu.edu.cn [Department of Applied Physics, School of Science, Xi' an Jiaotong University, Shaanxi 710049 (China); Xia, Minggang [Department of Optical Information Science and Technology, School of Science, Xi' an Jiaotong University, 710049 (China); Laboratory of Nanostructure and Physics Properties, School of Science, Xi' an Jiaotong University, 710049 (China); He, Siyu [Department of Applied Physics, School of Science, Xi' an Jiaotong University, Shaanxi 710049 (China); Yang, Qifan [Department of Biomedical Engineering, School of Life Science and Technology, Xi' an Jiaotong University, Shaanxi 710049 (China); Yan, Yuming [Department of Electrical Engineering and Automation, School of Electrical Engineering, Xi' an Jiaotong University, Shaanxi 710049 (China); Zhao, Hanqiao [Department of Biomedical Engineering, School of Life Science and Technology, Xi' an Jiaotong University, Shaanxi 710049 (China)

    2017-02-19

    The spontaneous formation of double helices for filaments under torsion is common and significant. For example, the research on the supercoiling of DNA is helpful for understanding the replication and transcription of DNA. Similar double helices can appear in carbon nanotube yarns, cables, telephone wires and so forth. We noticed that non-uniform double helices can be produced due to the surface friction induced by the self-contact. Therefore an ideal model was presented to investigate the formation of double helices for elastic rods under torque. A general equilibrium condition which is valid for both the smooth surface and the rough surface situations is derived by using the variational method. By adding further constraints, the smooth and rough surface situations are investigated in detail respectively. Additionally, the model showed that the specific process of how to twist and slack the rod can determine the surface friction and hence influence the configuration of the double helix formed by rods with rough surfaces. Based on this principle, a method of manufacturing double helices with designed configurations was proposed and demonstrated. Finally, experiments were performed to verify the model and the results agreed well with the theory. - Highlights: • An ideal model is conceived to investigate the spontaneous formation of double helices for rods under torsion. • Variational method is used to obtain a universal result for the double helix formation process • Self-contact and surface friction is considered to analyze the non-uniform double helix. • A novel method of producing double helix with arbitrary configuration is proposed and demonstrated. • The experiment results agree well with the theory.

  20. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2011-01-01

    A new set of muon alignment constants was approved in August. The relative position between muon chambers is essentially unchanged, indicating good detector stability. The main changes concern the global positioning of the barrel and of the endcap rings to match the new Tracker geometry. Detailed studies of the differences between track-based and optical alignment of DTs have proven to be a valuable tool for constraining Tracker alignment weak modes, and this information is now being used as part of the alignment procedure. In addition to the “split-cosmic” analysis used to investigate the muon momentum resolution at high momentum, a new procedure based on reconstructing the invariant mass of di-muons from boosted Zs is under development. Both procedures show an improvement in the momentum precision of Global Muons with respect to Tracker-only Muons. Recent developments in track-based alignment include a better treatment of the tails of residual distributions and accounting for correla...

  1. International Expansion through Flexible Replication

    DEFF Research Database (Denmark)

    Jonsson, Anna; Foss, Nicolai Juul

    2011-01-01

    Business organizations may expand internationally by replicating a part of their value chain, such as a sales and marketing format, in other countries. However, little is known regarding how such “international replicators” build a format for replication, or how they can adjust it in order to ada......, etc.) are replicated in a uniform manner across stores, and change only very slowly (if at all) in response to learning (“flexible replication”). We conclude by discussing the factors that influence the approach to replication adopted by an international replicator.......Business organizations may expand internationally by replicating a part of their value chain, such as a sales and marketing format, in other countries. However, little is known regarding how such “international replicators” build a format for replication, or how they can adjust it in order to adapt...

  2. Modeling inhomogeneous DNA replication kinetics.

    Directory of Open Access Journals (Sweden)

    Michel G Gauthier

    Full Text Available In eukaryotic organisms, DNA replication is initiated at a series of chromosomal locations called origins, where replication forks are assembled proceeding bidirectionally to replicate the genome. The distribution and firing rate of these origins, in conjunction with the velocity at which forks progress, dictate the program of the replication process. Previous attempts at modeling DNA replication in eukaryotes have focused on cases where the firing rate and the velocity of replication forks are homogeneous, or uniform, across the genome. However, it is now known that there are large variations in origin activity along the genome and variations in fork velocities can also take place. Here, we generalize previous approaches to modeling replication, to allow for arbitrary spatial variation of initiation rates and fork velocities. We derive rate equations for left- and right-moving forks and for replication probability over time that can be solved numerically to obtain the mean-field replication program. This method accurately reproduces the results of DNA replication simulation. We also successfully adapted our approach to the inverse problem of fitting measurements of DNA replication performed on single DNA molecules. Since such measurements are performed on specified portion of the genome, the examined DNA molecules may be replicated by forks that originate either within the studied molecule or outside of it. This problem was solved by using an effective flux of incoming replication forks at the model boundaries to represent the origin activity outside the studied region. Using this approach, we show that reliable inferences can be made about the replication of specific portions of the genome even if the amount of data that can be obtained from single-molecule experiments is generally limited.

  3. Spatiotemporal alignment of in utero BOLD-MRI series.

    Science.gov (United States)

    Turk, Esra Abaci; Luo, Jie; Gagoski, Borjan; Pascau, Javier; Bibbo, Carolina; Robinson, Julian N; Grant, P Ellen; Adalsteinsson, Elfar; Golland, Polina; Malpica, Norberto

    2017-08-01

    To present a method for spatiotemporal alignment of in-utero magnetic resonance imaging (MRI) time series acquired during maternal hyperoxia for enabling improved quantitative tracking of blood oxygen level-dependent (BOLD) signal changes that characterize oxygen transport through the placenta to fetal organs. The proposed pipeline for spatiotemporal alignment of images acquired with a single-shot gradient echo echo-planar imaging includes 1) signal nonuniformity correction, 2) intravolume motion correction based on nonrigid registration, 3) correction of motion and nonrigid deformations across volumes, and 4) detection of the outlier volumes to be discarded from subsequent analysis. BOLD MRI time series collected from 10 pregnant women during 3T scans were analyzed using this pipeline. To assess pipeline performance, signal fluctuations between consecutive timepoints were examined. In addition, volume overlap and distance between manual region of interest (ROI) delineations in a subset of frames and the delineations obtained through propagation of the ROIs from the reference frame were used to quantify alignment accuracy. A previously demonstrated rigid registration approach was used for comparison. The proposed pipeline improved anatomical alignment of placenta and fetal organs over the state-of-the-art rigid motion correction methods. In particular, unexpected temporal signal fluctuations during the first normoxia period were significantly decreased (P quantitative studies of placental function by improving spatiotemporal alignment across placenta and fetal organs. 1 Technical Efficacy: Stage 1 J. MAGN. RESON. IMAGING 2017;46:403-412. © 2017 International Society for Magnetic Resonance in Medicine.

  4. SUMO and KSHV Replication

    Energy Technology Data Exchange (ETDEWEB)

    Chang, Pei-Ching [Institute of Microbiology and Immunology, National Yang-Ming University, Taipei 112, Taiwan (China); Kung, Hsing-Jien, E-mail: hkung@nhri.org.tw [Institute for Translational Medicine, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan (China); Department of Biochemistry and Molecular Medicine, University of California, Davis, CA 95616 (United States); UC Davis Cancer Center, University of California, Davis, CA 95616 (United States); Division of Molecular and Genomic Medicine, National Health Research Institutes, 35 Keyan Road, Zhunan, Miaoli County 35053, Taiwan (China)

    2014-09-29

    Small Ubiquitin-related MOdifier (SUMO) modification was initially identified as a reversible post-translational modification that affects the regulation of diverse cellular processes, including signal transduction, protein trafficking, chromosome segregation, and DNA repair. Increasing evidence suggests that the SUMO system also plays an important role in regulating chromatin organization and transcription. It is thus not surprising that double-stranded DNA viruses, such as Kaposi’s sarcoma-associated herpesvirus (KSHV), have exploited SUMO modification as a means of modulating viral chromatin remodeling during the latent-lytic switch. In addition, SUMO regulation allows the disassembly and assembly of promyelocytic leukemia protein-nuclear bodies (PML-NBs), an intrinsic antiviral host defense, during the viral replication cycle. Overcoming PML-NB-mediated cellular intrinsic immunity is essential to allow the initial transcription and replication of the herpesvirus genome after de novo infection. As a consequence, KSHV has evolved a way as to produce multiple SUMO regulatory viral proteins to modulate the cellular SUMO environment in a dynamic way during its life cycle. Remarkably, KSHV encodes one gene product (K-bZIP) with SUMO-ligase activities and one gene product (K-Rta) that exhibits SUMO-targeting ubiquitin ligase (STUbL) activity. In addition, at least two viral products are sumoylated that have functional importance. Furthermore, sumoylation can be modulated by other viral gene products, such as the viral protein kinase Orf36. Interference with the sumoylation of specific viral targets represents a potential therapeutic strategy when treating KSHV, as well as other oncogenic herpesviruses. Here, we summarize the different ways KSHV exploits and manipulates the cellular SUMO system and explore the multi-faceted functions of SUMO during KSHV’s life cycle and pathogenesis.

  5. Belt Aligning Revisited

    Directory of Open Access Journals (Sweden)

    Yurchenko Vadim

    2017-01-01

    parts of the conveyor, the sides of the belt wear intensively. This results in reducing the life of the belt. The reasons for this phenomenon are well investigated, but the difficulty lies in the fact that they all act simultaneously. The belt misalignment prevention can be carried out in two ways: by minimizing the effect of causes and by aligning the belt. The construction of aligning devices and errors encountered in practice are considered in this paper. Self-aligning roller supports rotational in plan view are recommended as a means of combating the belt misalignment.

  6. Hybrid vehicle motor alignment

    Science.gov (United States)

    Levin, Michael Benjamin

    2001-07-03

    A rotor of an electric motor for a motor vehicle is aligned to an axis of rotation for a crankshaft of an internal combustion engine having an internal combustion engine and an electric motor. A locator is provided on the crankshaft, a piloting tool is located radially by the first locator to the crankshaft. A stator of the electric motor is aligned to a second locator provided on the piloting tool. The stator is secured to the engine block. The rotor is aligned to the crankshaft and secured thereto.

  7. Precision alignment device

    Science.gov (United States)

    Jones, N.E.

    1988-03-10

    Apparatus for providing automatic alignment of beam devices having an associated structure for directing, collimating, focusing, reflecting, or otherwise modifying the main beam. A reference laser is attached to the structure enclosing the main beam producing apparatus and produces a reference beam substantially parallel to the main beam. Detector modules containing optical switching devices and optical detectors are positioned in the path of the reference beam and are effective to produce an electrical output indicative of the alignment of the main beam. This electrical output drives servomotor operated adjustment screws to adjust the position of elements of the structure associated with the main beam to maintain alignment of the main beam. 5 figs.

  8. Alignment for CSR

    International Nuclear Information System (INIS)

    Wang Shoujin; Man Kaidi; Guo Yizhen; Cai Guozhu; Guo Yuhui

    2002-01-01

    Cooled Storage Ring of Heavy Ion Research Facility in Lanzhou (HIRFL-CSR) belongs to China great scientific project in China. The alignment for it is very difficult because of very large area and very high accuracy. For the special case in HIRFL-CSR, some new methods and new instruments are used, including the construction of survey control network, the usage of laser tracker, and CSR alignment database system with applications developed to store and analyze data. The author describes the whole procedure of CSR alignment

  9. Methods in ALFA Alignment

    CERN Document Server

    Melendez, Jordan

    2014-01-01

    This note presents two model-independent methods for use in the alignment of the ALFA forward detectors. Using a Monte Carlo simulated LHC run at \\beta = 90m and \\sqrt{s} = 7 TeV, the Kinematic Peak alignment method is utilized to reconstruct the Mandelstam momentum transfer variable t for single-diractive protons. The Hot Spot method uses fluctuations in the hitmap density to pinpoint particular regions in the detector that could signal a misalignment. Another method uses an error function fit to find the detector edge. With this information, the vertical alignment can be determined.

  10. Influence Of Nonuniformity On Infrared Focal Plane Array Performance

    Science.gov (United States)

    Milton, A. F.; Barone, F. R.; Kruer, M. R.

    1985-08-01

    It is well known that detector response nonuniformity results in pattern noise with staring sensors that is a severe problem in the infrared due to the low intrinsic contrast of IR imagery. The pattern noise can be corrected by electronic processing; however, the ability to correct for pattern noise is limited by the interaction of interscene and intrascene variability with the dynamic range of the processor (number of bits) and, depending upon the algorithm used, by nonlinearities in the detector response. This paper quantifies these limitations and describes the interaction of detector gain nonuniformity and detector nonlinearities. Probabilistic models are developed to determine the maximum sensitivity that can be obtained using a two-point algorithm to correct a nonlinear response curve over a wide temperature range. Curves that permit a prediction of the noise equivalent differential temperature (NEAT) under varying circumstances are presented. A piecewise linear approach to dealing with severe detector response nonlinearities is presented and analyzed for its effectiveness.

  11. Measurement of reactivity effect caused by nonuniform fuel distribution

    International Nuclear Information System (INIS)

    Yamane, Yoshihiro; Hirano, Yasushi; Yasui, Hazime; Nishina, Kojiro; Shiroya, Seiji

    1991-01-01

    A reactivity effect due to a spatial variation of nuclear fuel concentration is an important problem in a reprocessing plant. To estimate this reactivity effect theoretically, the ''Goertzel's necessary condition, and th Fuel Importance'' theory have been proposed. In order to verify these theories, we have performed systematic measurements of reactivity effect due to the nonuniformity in the fuel distribution within the Kyoto University Critical Assembly. Neutron flux distribution and Fuel Importance distribution were also determined. A nonuniform assembly whose fuel concentration in the center region was 40% higher than the uniform one was found to have an excess reactivity of 0.3%Δk/k, with the same total uranium mass for which the uniform assembly was just critical. Moreover, its spatial distribution of thermal neutron flux and of Fuel Importance were more flat than those of the uniform assembly, as expected by the Goertzel's condition and the Fuel Importance theory. (Author)

  12. POSSOL, 2-D Poisson Equation Solver for Nonuniform Grid

    International Nuclear Information System (INIS)

    Orvis, W.J.

    1988-01-01

    1 - Description of program or function: POSSOL is a two-dimensional Poisson equation solver for problems with arbitrary non-uniform gridding in Cartesian coordinates. It is an adaptation of the uniform grid PWSCRT routine developed by Schwarztrauber and Sweet at the National Center for Atmospheric Research (NCAR). 2 - Method of solution: POSSOL will solve the Helmholtz equation on an arbitrary, non-uniform grid on a rectangular domain allowing only one type of boundary condition on any one side. It can also be used to handle more than one type of boundary condition on a side by means of a capacitance matrix technique. There are three types of boundary conditions that can be applied: fixed, derivative, or periodic

  13. Numerical simulation of effect of laser nonuniformity in interior interface

    International Nuclear Information System (INIS)

    Yu Xiaojin; Wu Junfeng; Ye Wenhua

    2007-01-01

    Using the LARED-S code and referring to the NIF direct-drive DT ignition target, the effect of laser nonuniformity on the interior interface in direct-drive spherical implosion with high convergence ratio was numerically studied. The two-dimensional results show that the implosion with high convergence ratio is sensitive to the nonuniformity of driving laser, and the growth of hydrodynamic instability on interior interface destroys the symmetric-drive and reduces the volume of central hot spot observably. Taking the limit that perturbation amplitude is equal to 1/3 radius of central hot spot, the simulation also gives that the requirements for the laser uniformity for different mode number(less than 12) on simple physical model are between 2.5% -0.25%, and the modes between 8-10 have the most rigorous requirement which is about 0.25%. (authors)

  14. Protostellar formation in rotating interstellar clouds. VI. Nonuniform initial conditions

    International Nuclear Information System (INIS)

    Boss, A.P.

    1987-01-01

    The collapse and fragmentation of rotating protostellar clouds is explored, starting from nonuniform density and nonuniform rotation initial conditions. Whether binary fragmentation occurs during the first dynamic collapse phase depends strongly on the initial density profile. Exponential clouds are only somewhat more resistant to fragmentation than uniform-density clouds, but power-law clouds do not undergo fragmentation for likely values of a relevant parameter. Because binary fragments start from profiles intermediate between uniform density and exponential clouds, minimum protostellar mass for population I stars should be increased to approximately 0.02 solar mass. The axisymmetric Terey et al. (1984) model should be stable with respect to nonaxisymmetric perturbations. Considering the observed binary frequency, collapse from power-law initial conditions appears to be less common than collapse from more uniform initial conditions. 34 references

  15. Computation of nonuniform transmission lines using the FDTD method

    Energy Technology Data Exchange (ETDEWEB)

    Miranda, G.C.; Paulino, J.O.S. [Universidade Federal de Minas Gerais, Belo Horizonte, MG (Brazil). School of Engineering

    1997-12-31

    Calculation of lightning overvoltages on transmission lines has been described. Lightning induced overvoltages are of great significance under certain conditions because of the main characteristics of the phenomena. The lightning channel model is one of the most important parameters essential to obtaining the generated electromagnetic fields. In this study, nonuniform transmission line equations were solved using the finite difference method and the leap-frog scheme, the Finite Difference Time Domain (FDTD) method. The subroutine was interfaced with the Electromagnetic Transients Program (EMTP). Two models were used to represent the characteristic impedance of the nonuniform lines used to model the transmission line towers and the lightning main channel. The advantages of the FDTD method was the much smaller code and faster processing time. 35 refs., 5 figs.

  16. Non-uniformity measurements of PbWO4 crystals

    International Nuclear Information System (INIS)

    Depasse, P.; Ernenwein, J.P.; Ille, B.; Martin, F.; Rosset, C.; Zach, F.

    1998-11-01

    Two independent methods have been used to measure the longitudinal non-uniformity scintillation response of 3 different (23-cm long) PbWO 4 crystals. The first one is the classical 60 Co source method. The source is collimated along the crystal, each 1,5-cm, and the scintillation signal is measured with a photomultiplier (a hybrid photomultiplier in our case). The second one is the use of cosmic particles (Minimum Ionizing Particles). A cosmic bench allows reconstructing the track of the MIP's and thus the energy deposit with the help of a full GEANT simulation of the setup. Variations of E along the crystal artificially cut in 1,5-cm divisions, leads to determine the non-uniformity. The conclusion is that both methods agree quite well. Furthermore, a good estimation of crystal light yield can be obtained. (author)

  17. Non-uniformity of phase structure in immiscible polymer blends

    Czech Academy of Sciences Publication Activity Database

    Fortelný, Ivan; Lapčíková, Monika; Lednický, František; Starý, Zdeněk; Kruliš, Zdeněk

    2008-01-01

    Roč. 48, č. 3 (2008), s. 564-571 ISSN 0032-3888 R&D Projects: GA ČR GA106/06/0729; GA ČR GA106/06/0761 Institutional research plan: CEZ:AV0Z40500505 Keywords : polymer blends * melt mixing * non-uniform morphology Subject RIV: CD - Macromolecular Chemistry Impact factor: 1.245, year: 2008

  18. Using Nonuniform Fiber to Generate Slow Light via SBS

    Directory of Open Access Journals (Sweden)

    Wenhai Li

    2008-01-01

    Full Text Available The data pulse delay based on slow light induced by stimulated Brillouin scattering (SBS in a nonuniform dispersion decreasing fiber (DDF is demonstrated experimentally, and the distortions of data pulses at different beat frequencies are studied. We found that a delay exceeding a pulse width can be achieved at particular beat frequency, and the DDF has larger delay versus gain slope coefficient with much better output pulse quality than single-mode fiber.

  19. Linearization of Nonautonomous Impulsive System with Nonuniform Exponential Dichotomy

    Directory of Open Access Journals (Sweden)

    Yongfei Gao

    2014-01-01

    Full Text Available This paper gives a version of Hartman-Grobman theorem for the impulsive differential equations. We assume that the linear impulsive system has a nonuniform exponential dichotomy. Under some suitable conditions, we proved that the nonlinear impulsive system is topologically conjugated to its linear system. Indeed, we do construct the topologically equivalent function (the transformation. Moreover, the method to prove the topological conjugacy is quite different from those in previous works (e.g., see Barreira and Valls, 2006.

  20. GEPOIS: a two dimensional nonuniform mesh Poisson solver

    International Nuclear Information System (INIS)

    Quintenz, J.P.; Freeman, J.R.

    1979-06-01

    A computer code is described which solves Poisson's equation for the electric potential over a two dimensional cylindrical (r,z) nonuniform mesh which can contain internal electrodes. Poisson's equation is solved over a given region subject to a specified charge distribution with either Neumann or Dirichlet perimeter boundary conditions and with Dirichlet boundary conditions on internal surfaces. The static electric field is also computed over the region with special care given to normal electric field components at boundary surfaces

  1. DNA Replication Profiling Using Deep Sequencing.

    Science.gov (United States)

    Saayman, Xanita; Ramos-Pérez, Cristina; Brown, Grant W

    2018-01-01

    Profiling of DNA replication during progression through S phase allows a quantitative snap-shot of replication origin usage and DNA replication fork progression. We present a method for using deep sequencing data to profile DNA replication in S. cerevisiae.

  2. Modelling of HVDC wall bushing flashover in nonuniform rain

    International Nuclear Information System (INIS)

    Rizk, F.A.M.; Kamel, S.I.

    1991-01-01

    This paper presents the first mathematical model to provide necessary and sufficient conditions for flashover of an HVDC wall bushing under nonuniform rain. The suggested mechanism is initiated by streamer bridging of the dry zone enhanced by nonuniform voltage distribution along the bushing and within the dry zone. Fast voltage collapse across the dry zone die to energy stored in the bushing stray capacitance to ground leads to impulsive stressing of the wet part of the bushing. The nonuniform distribution of the impulse stress and the process of streamer bridging, fast voltage collapse as well as subsequent recharging of the bushing capacitances can lead to continued discharge propagation and flashover of the complete bushing. The findings of the model have been satisfactorily compared with previous experiments and field observations and can, for the first time, account for the following aspects of the flashover mechanism: critical dry zone length, polarity effect, specific leakage path, wet layer conductance per unit leakage length as well as the DC system voltage

  3. ELECTRONIC CIRCUIT BOARDS NON-UNIFORM COOLING SYSTEM MODEL

    Directory of Open Access Journals (Sweden)

    D. V. Yevdulov

    2016-01-01

    Full Text Available Abstract. The paper considers a mathematical model of non-uniform cooling of electronic circuit boards. The block diagram of the system implementing this approach, the method of calculation of the electronic board temperature field, as well as the principle of its thermal performance optimizing are presented. In the considered scheme the main heat elimination from electronic board is produced by the radiator system, and additional cooling of the most temperature-sensitive components is produced by thermoelectric batteries. Are given the two-dimensional temperature fields of the electronic board during its uniform and non-uniform cooling, is carried out their comparison. As follows from the calculations results, when using a uniform overall cooling of electronic unit there is a waste of energy for the cooling 0f electronic board parts which temperature is within acceptable temperature range without the cooling system. This approach leads to the increase in the cooling capacity of used thermoelectric batteries in comparison with the desired values. This largely reduces the efficiency of heat elimination system. The use for electronic boards cooling of non-uniform local heat elimination removes this disadvantage. The obtained dependences show that in this case, the energy required to create a given temperature is smaller than when using a common uniform cooling. In this approach the temperature field of the electronic board is more uniform and the cooling is more efficient. 

  4. Hydroxyurea-Induced Replication Stress

    Directory of Open Access Journals (Sweden)

    Kenza Lahkim Bennani-Belhaj

    2010-01-01

    Full Text Available Bloom's syndrome (BS displays one of the strongest known correlations between chromosomal instability and a high risk of cancer at an early age. BS cells combine a reduced average fork velocity with constitutive endogenous replication stress. However, the response of BS cells to replication stress induced by hydroxyurea (HU, which strongly slows the progression of replication forks, remains unclear due to publication of conflicting results. Using two different cellular models of BS, we showed that BLM deficiency is not associated with sensitivity to HU, in terms of clonogenic survival, DSB generation, and SCE induction. We suggest that surviving BLM-deficient cells are selected on the basis of their ability to deal with an endogenous replication stress induced by replication fork slowing, resulting in insensitivity to HU-induced replication stress.

  5. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G.Gomez

    Since September, the muon alignment system shifted from a mode of hardware installation and commissioning to operation and data taking. All three optical subsystems (Barrel, Endcap and Link alignment) have recorded data before, during and after CRAFT, at different magnetic fields and during ramps of the magnet. This first data taking experience has several interesting goals: •    study detector deformations and movements under the influence of the huge magnetic forces; •    study the stability of detector structures and of the alignment system over long periods, •    study geometry reproducibility at equal fields (specially at 0T and 3.8T); •    reconstruct B=0T geometry and compare to nominal/survey geometries; •    reconstruct B=3.8T geometry and provide DT and CSC alignment records for CMSSW. However, the main goal is to recons...

  6. Alignment of CEBAF cryomodules

    International Nuclear Information System (INIS)

    Schneider, W.J.; Bisognano, J.J.; Fischer, J.

    1993-06-01

    CEBAF, the Continuous Electron Beam Accelerator Facility, when completed, will house a 4 GeV recirculating accelerator. Each of the accelerator's two linacs contains 160 superconducting radio frequency (SRF) 1497 MHz niobium cavities in 20 cryomodules. Alignments of the cavities within the cryomodule with respect to beam axis is critical to achieving the optimum accelerator performance. This paper discusses the rationale for the current specification on cavity mechanical alignment: 2 mrad (rms) applied to the 0.5 m active length cavities. We describe the tooling that was developed to achieve the tolerance at the time of cavity pair assembly, to preserve and integrate alignment during cryomodule assembly, and to translate alignment to appropriate installation in the beam line

  7. Biaxial magnetic grain alignment

    International Nuclear Information System (INIS)

    Staines, M.; Genoud, J.-Y.; Mawdsley, A.; Manojlovic, V.

    2000-01-01

    Full text: We describe a dynamic magnetic grain alignment technique which can be used to produce YBCO thick films with a high degree of biaxial texture. The technique is, however, generally applicable to preparing ceramics or composite materials from granular materials with orthorhombic or lower crystal symmetry and is therefore not restricted to superconducting applications. Because magnetic alignment is a bulk effect, textured substrates are not required, unlike epitaxial coated tape processes such as RABiTS. We have used the technique to produce thick films of Y-247 on untextured silver substrates. After processing to Y-123 the films show a clear enhancement of critical current density relative to identically prepared untextured or uniaxially textured samples. We describe procedures for preparing materials using magnetic biaxial grain alignment with the emphasis on alignment in epoxy, which can give extremely high texture. X-ray rocking curves with FWHM of as little as 1-2 degrees have been measured

  8. DATABASE REPLICATION IN HETEROGENOUS PLATFORM

    OpenAIRE

    Hendro Nindito; Evaristus Didik Madyatmadja; Albert Verasius Dian Sano

    2014-01-01

    The application of diverse database technologies in enterprises today is increasingly a common practice. To provide high availability and survavibality of real-time information, a database replication technology that has capability to replicate databases under heterogenous platforms is required. The purpose of this research is to find the technology with such capability. In this research, the data source is stored in MSSQL database server running on Windows. The data will be replicated to MyS...

  9. Pairwise Sequence Alignment Library

    Energy Technology Data Exchange (ETDEWEB)

    2015-05-20

    Vector extensions, such as SSE, have been part of the x86 CPU since the 1990s, with applications in graphics, signal processing, and scientific applications. Although many algorithms and applications can naturally benefit from automatic vectorization techniques, there are still many that are difficult to vectorize due to their dependence on irregular data structures, dense branch operations, or data dependencies. Sequence alignment, one of the most widely used operations in bioinformatics workflows, has a computational footprint that features complex data dependencies. The trend of widening vector registers adversely affects the state-of-the-art sequence alignment algorithm based on striped data layouts. Therefore, a novel SIMD implementation of a parallel scan-based sequence alignment algorithm that can better exploit wider SIMD units was implemented as part of the Parallel Sequence Alignment Library (parasail). Parasail features: Reference implementations of all known vectorized sequence alignment approaches. Implementations of Smith Waterman (SW), semi-global (SG), and Needleman Wunsch (NW) sequence alignment algorithms. Implementations across all modern CPU instruction sets including AVX2 and KNC. Language interfaces for C/C++ and Python.

  10. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    S. Szillasi

    2013-01-01

    The CMS detector has been gradually opened and whenever a wheel became exposed the first operation was the removal of the MABs, the sensor structures of the Hardware Barrel Alignment System. By the last days of June all 36 MABs have arrived at the Alignment Lab at the ISR where, as part of the Alignment Upgrade Project, they are refurbished with new Survey target holders. Their electronic checkout is on the way and finally they will be recalibrated. During LS1 the alignment system will be upgraded in order to allow more precise reconstruction of the MB4 chambers in Sector 10 and Sector 4. This requires new sensor components, so called MiniMABs (pictured below), that have already been assembled and calibrated. Image 6: Calibrated MiniMABs are ready for installation For the track-based alignment, the systematic uncertainties of the algorithm are under scrutiny: this study will enable the production of an improved Monte Carlo misalignment scenario and to update alignment position errors eventually, crucial...

  11. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2012-01-01

      A new muon alignment has been produced for 2012 A+B data reconstruction. It uses the latest Tracker alignment and single-muon data samples to align both DTs and CSCs. Physics validation has been performed and shows a modest improvement in stand-alone muon momentum resolution in the barrel, where the alignment is essentially unchanged from the previous version. The reference-target track-based algorithm using only collision muons is employed for the first time to align the CSCs, and a substantial improvement in resolution is observed in the endcap and overlap regions for stand-alone muons. This new alignment is undergoing the approval process and is expected to be deployed as part of a new global tag in the beginning of December. The pT dependence of the φ-bias in curvature observed in Monte Carlo was traced to a relative vertical misalignment between the Tracker and barrel muon systems. Moving the barrel as a whole to match the Tracker cures this pT dependence, leaving only the &phi...

  12. Replication of bacteriophage lambda DNA

    International Nuclear Information System (INIS)

    Tsurimoto, T.; Matsubara, K.

    1983-01-01

    In this paper results of studies on the mechanism of bacteriophage lambda replication using molecular biological and biochemical approaches are reported. The purification of the initiator proteins, O and P, and the role of the O and P proteins in the initiation of lambda DNA replication through interactions with specific DNA sequences are described. 47 references, 15 figures

  13. Pattern replication by confined dewetting

    NARCIS (Netherlands)

    Harkema, S.; Schäffer, E.; Morariu, M.D.; Steiner, U

    2003-01-01

    The dewetting of a polymer film in a confined geometry was employed in a pattern-replication process. The instability of dewetting films is pinned by a structured confining surface, thereby replicating its topographic pattern. Depending on the surface energy of the confining surface, two different

  14. Charter School Replication. Policy Guide

    Science.gov (United States)

    Rhim, Lauren Morando

    2009-01-01

    "Replication" is the practice of a single charter school board or management organization opening several more schools that are each based on the same school model. The most rapid strategy to increase the number of new high-quality charter schools available to children is to encourage the replication of existing quality schools. This policy guide…

  15. LHCb experience with LFC replication

    International Nuclear Information System (INIS)

    Bonifazi, F; Carbone, A; D'Apice, A; Dell'Agnello, L; Re, G L; Martelli, B; Ricci, P P; Sapunenko, V; Vitlacil, D; Perez, E D; Duellmann, D; Girone, M; Peco, G; Vagnoni, V

    2008-01-01

    Database replication is a key topic in the framework of the LHC Computing Grid to allow processing of data in a distributed environment. In particular, the LHCb computing model relies on the LHC File Catalog, i.e. a database which stores information about files spread across the GRID, their logical names and the physical locations of all the replicas. The LHCb computing model requires the LFC to be replicated at Tier-1s. The LCG 3D project deals with the database replication issue and provides a replication service based on Oracle Streams technology. This paper describes the deployment of the LHC File Catalog replication to the INFN National Center for Telematics and Informatics (CNAF) and to other LHCb Tier-1 sites. We performed stress tests designed to evaluate any delay in the propagation of the streams and the scalability of the system. The tests show the robustness of the replica implementation with performance going much beyond the LHCb requirements

  16. LHCb experience with LFC replication

    CERN Document Server

    Bonifazi, F; Perez, E D; D'Apice, A; dell'Agnello, L; Düllmann, D; Girone, M; Re, G L; Martelli, B; Peco, G; Ricci, P P; Sapunenko, V; Vagnoni, V; Vitlacil, D

    2008-01-01

    Database replication is a key topic in the framework of the LHC Computing Grid to allow processing of data in a distributed environment. In particular, the LHCb computing model relies on the LHC File Catalog, i.e. a database which stores information about files spread across the GRID, their logical names and the physical locations of all the replicas. The LHCb computing model requires the LFC to be replicated at Tier-1s. The LCG 3D project deals with the database replication issue and provides a replication service based on Oracle Streams technology. This paper describes the deployment of the LHC File Catalog replication to the INFN National Center for Telematics and Informatics (CNAF) and to other LHCb Tier-1 sites. We performed stress tests designed to evaluate any delay in the propagation of the streams and the scalability of the system. The tests show the robustness of the replica implementation with performance going much beyond the LHCb requirements.

  17. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    Gervasio Gomez

    2012-01-01

      The new alignment for the DT chambers has been successfully used in physics analysis starting with the 52X Global Tag. The remaining main areas of development over the next few months will be preparing a new track-based CSC alignment and producing realistic APEs (alignment position errors) and MC misalignment scenarios to match the latest muon alignment constants. Work on these items has been delayed from the intended timeline, mostly due to a large involvement of the muon alignment man-power in physics analyses over the first half of this year. As CMS keeps probing higher and higher energies, special attention must be paid to the reconstruction of very-high-energy muons. Recent muon POG reports from mid-June show a φ-dependence in curvature bias in Monte Carlo samples. This bias is observed already at the tracker level, where it is constant with muon pT, while it grows with pT as muon chamber information is added to the tracks. Similar studies show a much smaller effect in data, at le...

  18. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez

    2010-01-01

    For the last three months, the Muon Alignment group has focussed on providing a new, improved set of alignment constants for the end-of-year data reprocessing. These constants were delivered on time and approved by the CMS physics validation team on November 17. The new alignment incorporates several improvements over the previous one from March for nearly all sub-systems. Motivated by the loss of information from a hardware failure in May (an entire MAB was lost), the optical barrel alignment has moved from a modular, super-plane reconstruction, to a full, single loop calculation of the entire geometry for all DTs in stations 1, 2 and 3. This makes better use of the system redundancy, mitigating the effect of the information loss. Station 4 is factorised and added afterwards to make the system smaller (and therefore faster to run), and also because the MAB calibration at the MB4 zone is less precise. This new alignment procedure was tested at 0 T against photogrammetry resulting in precisions of the order...

  19. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    M. Dallavalle

    2013-01-01

    A new Muon misalignment scenario for 2011 (7 TeV) Monte Carlo re-processing was re-leased. The scenario is based on running of standard track-based reference-target algorithm (exactly as in data) using single-muon simulated sample (with the transverse-momentum spectrum matching data). It used statistics similar to what was used for alignment with 2011 data, starting from an initially misaligned Muon geometry from uncertainties of hardware measurements and using the latest Tracker misalignment geometry. Validation of the scenario (with muons from Z decay and high-pT simulated muons) shows that it describes data well. The study of systematic uncertainties (dominant by now due to huge amount of data collected by CMS and used for muon alignment) is finalised. Realistic alignment position errors are being obtained from the estimated uncertainties and are expected to improve the muon reconstruction performance. Concerning the Hardware Alignment System, the upgrade of the Barrel Alignment is in progress. By now, d...

  20. Probabilistic biological network alignment.

    Science.gov (United States)

    Todor, Andrei; Dobra, Alin; Kahveci, Tamer

    2013-01-01

    Interactions between molecules are probabilistic events. An interaction may or may not happen with some probability, depending on a variety of factors such as the size, abundance, or proximity of the interacting molecules. In this paper, we consider the problem of aligning two biological networks. Unlike existing methods, we allow one of the two networks to contain probabilistic interactions. Allowing interaction probabilities makes the alignment more biologically relevant at the expense of explosive growth in the number of alternative topologies that may arise from different subsets of interactions that take place. We develop a novel method that efficiently and precisely characterizes this massive search space. We represent the topological similarity between pairs of aligned molecules (i.e., proteins) with the help of random variables and compute their expected values. We validate our method showing that, without sacrificing the running time performance, it can produce novel alignments. Our results also demonstrate that our method identifies biologically meaningful mappings under a comprehensive set of criteria used in the literature as well as the statistical coherence measure that we developed to analyze the statistical significance of the similarity of the functions of the aligned protein pairs.

  1. Aligning Responsible Business Practices

    DEFF Research Database (Denmark)

    Weller, Angeli E.

    2017-01-01

    This article offers an in-depth case study of a global high tech manufacturer that aligned its ethics and compliance, corporate social responsibility, and sustainability practices. Few large companies organize their responsible business practices this way, despite conceptual relevance and calls t...... and managers interested in understanding how responsible business practices may be collectively organized.......This article offers an in-depth case study of a global high tech manufacturer that aligned its ethics and compliance, corporate social responsibility, and sustainability practices. Few large companies organize their responsible business practices this way, despite conceptual relevance and calls...... to manage them comprehensively. A communities of practice theoretical lens suggests that intentional effort would be needed to bridge meaning between the relevant managers and practices in order to achieve alignment. The findings call attention to the important role played by employees who broker...

  2. FMIT alignment cart

    International Nuclear Information System (INIS)

    Potter, R.C.; Dauelsberg, L.B.; Clark, D.C.; Grieggs, R.J.

    1981-01-01

    The Fusion Materials Irradiation Test (FMIT) Facility alignment cart must perform several functions. It must serve as a fixture to receive the drift-tube girder assembly when it is removed from the linac tank. It must transport the girder assembly from the linac vault to the area where alignment or disassembly is to take place. It must serve as a disassembly fixture to hold the girder while individual drift tubes are removed for repair. It must align the drift tube bores in a straight line parallel to the girder, using an optical system. These functions must be performed without violating any clearances found within the building. The bore tubes of the drift tubes will be irradiated, and shielding will be included in the system for easier maintenance

  3. Alignment of whole genomes.

    Science.gov (United States)

    Delcher, A L; Kasif, S; Fleischmann, R D; Peterson, J; White, O; Salzberg, S L

    1999-01-01

    A new system for aligning whole genome sequences is described. Using an efficient data structure called a suffix tree, the system is able to rapidly align sequences containing millions of nucleotides. Its use is demonstrated on two strains of Mycoplasma tuberculosis, on two less similar species of Mycoplasma bacteria and on two syntenic sequences from human chromosome 12 and mouse chromosome 6. In each case it found an alignment of the input sequences, using between 30 s and 2 min of computation time. From the system output, information on single nucleotide changes, translocations and homologous genes can easily be extracted. Use of the algorithm should facilitate analysis of syntenic chromosomal regions, strain-to-strain comparisons, evolutionary comparisons and genomic duplications. PMID:10325427

  4. NACSA Charter School Replication Guide: The Spectrum of Replication Options. Authorizing Matters. Replication Brief 1

    Science.gov (United States)

    O'Neill, Paul

    2010-01-01

    One of the most important and high-profile issues in public education reform today is the replication of successful public charter school programs. With more than 5,000 failing public schools in the United States, there is a tremendous need for strong alternatives for parents and students. Replicating successful charter school models is an…

  5. The demagnetizing field of a non-uniform rectangular prism

    DEFF Research Database (Denmark)

    Smith, Anders; Nielsen, Kaspar Kirstein; Christensen, Dennis

    2010-01-01

    The effect of demagnetization on the magnetic properties of a rectangular ferromagnetic prism under non-uniform conditions is investigated. A numerical model for solving the spatially varying internal magnetic field is developed, validated and applied to relevant cases. The demagnetizing field...... is solved by an analytical calculation and the coupling between applied field, the demagnetization tensor field and spatially varying temperature is solved through iteration. We show that the demagnetizing field is of great importance in many cases and that it is necessary to take into account the non...

  6. Nonuniform nuclear structures and QPOs in giant flares

    International Nuclear Information System (INIS)

    Sotani, Hajime

    2012-01-01

    We show that the shear modes in the neutron star crust are quite sensitive to the existence of nonuniform nuclear structures, the so-called “pasta”. Due to the existence of pasta phase, the frequencies of shear modes are reduced. Since the torsional shear frequencies depend strongly on the structure of pasta phase, through the observations of stellar oscillations, one can probe the pasta structure in the crust. Additionally, considering the effect of pasta phase, we show the possibility to explain all the observed frequencies in the SGR 1806-20 with using only crust torsional oscillations.

  7. Nonuniform nuclear structures and QPOs in giant flares

    Energy Technology Data Exchange (ETDEWEB)

    Sotani, Hajime [Division of Theoretical Astronomy, National Astronomical Observatory of Japan, 2-21-1 Osawa, Mitaka, Tokyo 181-8588 (Japan)

    2012-11-12

    We show that the shear modes in the neutron star crust are quite sensitive to the existence of nonuniform nuclear structures, the so-called 'pasta'. Due to the existence of pasta phase, the frequencies of shear modes are reduced. Since the torsional shear frequencies depend strongly on the structure of pasta phase, through the observations of stellar oscillations, one can probe the pasta structure in the crust. Additionally, considering the effect of pasta phase, we show the possibility to explain all the observed frequencies in the SGR 1806-20 with using only crust torsional oscillations.

  8. Linear kinetic enlightenment of a slab of nonuniform plasma

    International Nuclear Information System (INIS)

    Revenchuk, S.M.

    1996-01-01

    A phenomenon of linear kinetic regeneration of a harmonic electric-field perturbation beyond the nonuniform opacity barrier due to electrons trapped by a potential well is investigated. Such electrons are reflected by the well walls without loss of phase memory about the external perturbation, which is rehabilitated on the other side of the barrier. The incidence of the electromagnetic wave polarized in the plane of incidence on a plasma slab. Analytic expressions for the regenerated electric field and regeneration coefficient are obtained in the ballistic approximation. The dependence of the regeneration coefficient on shape of the electrostatic potential confining the wave barrier is discussed

  9. Integer channels in nonuniform non-equilibrium 2D systems

    Science.gov (United States)

    Shikin, V.

    2018-01-01

    We discuss the non-equilibrium properties of integer channels in nonuniform 2D electron (hole) systems in the presence of a strong magnetic field. The results are applied to a qualitative explanation of the Corbino disk current-voltage characteristics (IVC) in the quantum Hall effect (QHE) regime. Special consideration is paid to the so-called "QHE breakdown" effect, which is readily observed in both the Hall bar and Corbino geometries of the tested cells. The QHE breakdown is especially evident in the Corbino samples, allowing for a more in-depth study of these effects.

  10. Simulation of beamline alignment operations

    International Nuclear Information System (INIS)

    Annese, C; Miller, M G.

    1999-01-01

    The CORBA-based Simulator was a Laboratory Directed Research and Development (LDRD) project that applied simulation techniques to explore critical questions about distributed control systems. The simulator project used a three-prong approach that studied object-oriented distribution tools, computer network modeling, and simulation of key control system scenarios. The National Ignition Facility's (NIF) optical alignment system was modeled to study control system operations. The alignment of NIF's 192 beamlines is a large complex operation involving more than 100 computer systems and 8000 mechanized devices. The alignment process is defined by a detailed set of procedures; however, many of the steps are deterministic. The alignment steps for a poorly aligned component are similar to that of a nearly aligned component; however, additional operations/iterations are required to complete the process. Thus, the same alignment operations will require variable amounts of time to perform depending on the current alignment condition as well as other factors. Simulation of the alignment process is necessary to understand beamline alignment time requirements and how shared resources such as the Output Sensor and Target Alignment Sensor effect alignment efficiency. The simulation has provided alignment time estimates and other results based on documented alignment procedures and alignment experience gained in the laboratory. Computer communication time, mechanical hardware actuation times, image processing algorithm execution times, etc. have been experimentally determined and incorporated into the model. Previous analysis of alignment operations utilized average implementation times for all alignment operations. Resource sharing becomes rather simple to model when only average values are used. The time required to actually implement the many individual alignment operations will be quite dynamic. The simulation model estimates the time to complete an operation using

  11. Experimental image alignment system

    Science.gov (United States)

    Moyer, A. L.; Kowel, S. T.; Kornreich, P. G.

    1980-01-01

    A microcomputer-based instrument for image alignment with respect to a reference image is described which uses the DEFT sensor (Direct Electronic Fourier Transform) for image sensing and preprocessing. The instrument alignment algorithm which uses the two-dimensional Fourier transform as input is also described. It generates signals used to steer the stage carrying the test image into the correct orientation. This algorithm has computational advantages over algorithms which use image intensity data as input and is suitable for a microcomputer-based instrument since the two-dimensional Fourier transform is provided by the DEFT sensor.

  12. A non-uniform expansion mechanical safety model of the stent.

    Science.gov (United States)

    Yang, J; Huang, N; Du, Q

    2009-01-01

    Stents have a serial unstable structure that readily leads to non-uniform expansion. Non-uniform expansion in turn creates a stent safety problem. We explain how a stent may be simplified to a serial unstable structure, and present a method to calculate the non-uniform expansion of the stent on the basis of the serial unstable structure. We propose a safety criterion based on the expansion displacement instead of the strain, and explain that the parameter Rd, the ratio of the maximum displacement of the elements to normal displacement, is meaningful to assess the safety level of the stent. We also examine how laser cutting influences non-uniform expansion. The examples illustrate how to calculate the parameter Rd to assess non-uniform expansion of the stent, and demonstrate how the laser cutting offset and strengthening coefficient of the material influence the stent expansion behaviour. The methods are valuable for assessing stent safety due to non-uniform expansion.

  13. AlignMe—a membrane protein sequence alignment web server

    Science.gov (United States)

    Stamm, Marcus; Staritzbichler, René; Khafizov, Kamil; Forrest, Lucy R.

    2014-01-01

    We present a web server for pair-wise alignment of membrane protein sequences, using the program AlignMe. The server makes available two operational modes of AlignMe: (i) sequence to sequence alignment, taking two sequences in fasta format as input, combining information about each sequence from multiple sources and producing a pair-wise alignment (PW mode); and (ii) alignment of two multiple sequence alignments to create family-averaged hydropathy profile alignments (HP mode). For the PW sequence alignment mode, four different optimized parameter sets are provided, each suited to pairs of sequences with a specific similarity level. These settings utilize different types of inputs: (position-specific) substitution matrices, secondary structure predictions and transmembrane propensities from transmembrane predictions or hydrophobicity scales. In the second (HP) mode, each input multiple sequence alignment is converted into a hydrophobicity profile averaged over the provided set of sequence homologs; the two profiles are then aligned. The HP mode enables qualitative comparison of transmembrane topologies (and therefore potentially of 3D folds) of two membrane proteins, which can be useful if the proteins have low sequence similarity. In summary, the AlignMe web server provides user-friendly access to a set of tools for analysis and comparison of membrane protein sequences. Access is available at http://www.bioinfo.mpg.de/AlignMe PMID:24753425

  14. Illumination non-uniformity of spirally wobbling beam in heavy ion fusion

    International Nuclear Information System (INIS)

    Suzuki, T.; Noguchi, K.; Kurosaki, T.; Barada, D.; Kawata, S.; Ma, Y. Y.; Ogoyski, A.I.

    2016-01-01

    In inertial confinement fusion, the driver beam illumination non-uniformity leads a degradation of fusion energy output. The illumination non-uniformity allowed is less than a few percent in inertial fusion target implosion. Heavy ion beam (HIB) accelerator provides a capability to oscillate a beam axis with a high frequency. The wobbling beams may provide a new method to reduce or smooth the beam illumination non-uniformity. In this paper the HIBs wobbling illumination scheme was optimized. (paper)

  15. Physical Limitations To Nonuniformity Correction In IR Focal Plane Arrays

    Science.gov (United States)

    Scribner, D. A.; Kruer, M. R.; Gridley, J. C.; Sarkady, K.

    1988-05-01

    Simple nonuniformity correction algorithms currently in use can be severely limited by nonlinear response characteristics of the individual pixels in an IR focal plane array. Although more complicated multi-point algorithms improve the correction process they too can be limited by nonlinearities. Furthermore, analysis of single pixel noise power spectrums usually show some level of 1 /f noise. This in turn causes pixel outputs to drift independent of each other thus causing the spatial noise (often called fixed pattern noise) of the array to increase as a function of time since the last calibration. Measurements are presented for two arrays (a HgCdTe hybrid and a Pt:Si CCD) describing pixel nonlinearities, 1/f noise, and residual spatial noise (after nonuniforming correction). Of particular emphasis is spatial noise as a function of the lapsed time since the last calibration and the calibration process selected. The resulting spatial noise is examined in terms of its effect on the NEAT performance of each array tested and comparisons are made. Finally, a discussion of implications for array developers is given.

  16. Potential coherent structures in nonuniform streaming dusty magnetoplasma

    Energy Technology Data Exchange (ETDEWEB)

    Vranjes, Jovo [Inst. of Physics, Belgrade (Yugoslavia); Shukla, Padma Kant [Ruhr-Universitaet Bochum, Institut fuer Theoretische Physik IV, Bochum (Germany)

    2001-07-01

    In this paper we study linear and nonlinear behaviour of modified convective cells and vortices in nonuniform dusty magnetoplasmas with perpendicular and parallel to the magnetic field plasma flows, and in basically two different physical systems, with stationary (corresponding to the case of ShuklaVarma mode) and nonstationary (i.e. taking part in perturbations) dust particles. For the case of stationary dust, by choosing some specific profiles for the sheared plasma flow and the dust density, we analyze the eigenvalue equation in order to deduce the growth rate. A threshold is also obtained for the wavenumber separating spatially damped and convective modes (growing in space) due to its interaction with the sheared plasma flow. In the nonlinear regime, for both stationary and nonstationary dust particles, and in the presence of various plasma flows perpendicular and parallel to the magnetic field lines, a variety of possible nonlinear solutions, driven by the nonuniform shear flow and dust density is presented, i.e., single and double vortex chains accompanied with zonal flows, and tripolar and global vortices. (author)

  17. Going from microscopic to macroscopic on nonuniform growing domains.

    Science.gov (United States)

    Yates, Christian A; Baker, Ruth E; Erban, Radek; Maini, Philip K

    2012-08-01

    Throughout development, chemical cues are employed to guide the functional specification of underlying tissues while the spatiotemporal distributions of such chemicals can be influenced by the growth of the tissue itself. These chemicals, termed morphogens, are often modeled using partial differential equations (PDEs). The connection between discrete stochastic and deterministic continuum models of particle migration on growing domains was elucidated by Baker, Yates, and Erban [Bull. Math. Biol. 72, 719 (2010)] in which the migration of individual particles was modeled as an on-lattice position-jump process. We build on this work by incorporating a more physically reasonable description of domain growth. Instead of allowing underlying lattice elements to instantaneously double in size and divide, we allow incremental element growth and splitting upon reaching a predefined threshold size. Such a description of domain growth necessitates a nonuniform partition of the domain. We first demonstrate that an individual-based stochastic model for particle diffusion on such a nonuniform domain partition is equivalent to a PDE model of the same phenomenon on a nongrowing domain, providing the transition rates (which we derive) are chosen correctly and we partition the domain in the correct manner. We extend this analysis to the case where the domain is allowed to change in size, altering the transition rates as necessary. Through application of the master equation formalism we derive a PDE for particle density on this growing domain and corroborate our findings with numerical simulations.

  18. Electrostatic ion-cyclotron waves in a nonuniform magnetic field

    International Nuclear Information System (INIS)

    Cartier, S.L.; D'Angelo, N.; Merlino, R.L.

    1985-01-01

    The properties of electrostatic ion-cyclotron waves excited in a single-ended cesium Q machine with a nonuniform magnetic field are described. The electrostatic ion-cyclotron waves are generated in the usual manner by drawing an electron current to a small exciter disk immersed in the plasma column. The parallel and perpendicular (to B) wavelengths and phase velocities are determined by mapping out two-dimensional wave phase contours. The wave frequency f depends on the location of the exciter disk in the nonuniform magnetic field, and propagating waves are only observed in the region where f> or approx. =f/sub c/i, where f/sub c/i is the local ion-cyclotron frequency. The parallel phase velocity is in the direction of the electron drift. From measurements of the plasma properties along the axis, it is inferred that the electron drift velocity is not uniform along the entire current channel. The evidence suggests that the waves begin being excited at that axial position where the critical drift velocity is first exceeded, consistent with a current-driven excitation mechanism

  19. Non-Uniform Cathode Emission Studies of a MIG Gun

    Science.gov (United States)

    Marchewka, C. D.; Shapiro, M. A.; Sirigiri, J. R.; Temkin, R. J.

    2004-11-01

    We present the initial results of the modeling of the effect of emission non-uniformity in 96 kV, 40 A Magnetron Injection Gun (MIG) of a 1.5 MW 110 GHz gyrotron using a 3D gun simulation code. The azimuthal emission nonuniformity can lead to increased mode competition and an overall decreased efficiency of the device [1]. The electron beam is modeled from the cathode to a downstream position where the velocity spread saturates using the AMAZE 3D suite of codes. After bench marking the results of the 3D code with 2D codes such as TRAK2D and EGUN, the emitter was modified to simulate asymmetric emission from the cathode to gain an understanding into the effects of inhomogeneous beam current density on the velocity spread and pitch factor of the electron beam. [1] G. S. Nusinovich, A.N. Vlasov, M. Botton, T. M. Antonsen, Jr., S. Cauffman, K. Felch, ``Effect of the azimuthal inhomogeneity of electron emission on gyrotron operation,'' Phys. Plasmas, vol. 8, no. 7, pp. 3473-3479, 2001

  20. Measurement of Anisotropic Particle Interactions with Nonuniform ac Electric Fields.

    Science.gov (United States)

    Rupp, Bradley; Torres-Díaz, Isaac; Hua, Xiaoqing; Bevan, Michael A

    2018-02-20

    Optical microscopy measurements are reported for single anisotropic polymer particles interacting with nonuniform ac electric fields. The present study is limited to conditions where gravity confines particles with their long axis parallel to the substrate such that particles can be treated using quasi-2D analysis. Field parameters are investigated that result in particles residing at either electric field maxima or minima and with long axes oriented either parallel or perpendicular to the electric field direction. By nonintrusively observing thermally sampled positions and orientations at different field frequencies and amplitudes, a Boltzmann inversion of the time-averaged probability of states yields kT-scale energy landscapes (including dipole-field, particle-substrate, and gravitational potentials). The measured energy landscapes show agreement with theoretical potentials using particle conductivity as the sole adjustable material property. Understanding anisotropic particle-field energy landscapes vs field parameters enables quantitative control of local forces and torques on single anisotropic particles to manipulate their position and orientation within nonuniform fields.

  1. Laterally excited flexible tanks with nonuniform density liquid

    International Nuclear Information System (INIS)

    Tang, Yu

    1996-01-01

    A study of the dynamic responses of flexible tanks containing nonuniform liquid under horizontal base excitations is presented. The system considered is an upright, circular cylindrical tank filled with an incompressible and inviscid liquid in which the density increases with the liquid depth. Only the impulsive components of response are considered in this study since the convective components can be computed by considering the tank to be rigid. It is shown in this study that for tanks with height-to-radius ratios between 0.3 and 1.2, the response quantities may be estimated utilizing the rigid tank solutions. Also, it is found that the pressure distribution along the tank wall is not sensitive to the detailed distribution function of the liquid density, and that the base shear and moments for the tank with nonuniform liquid can be estimated conservatively by assuming that the tank is filled with an equivalent uniform liquid density that preserves the total liquid weight. Finally, a simple equation for evaluating the fundamental natural frequency of the system is proposed

  2. Identification of the material properties in nonuniform nanostructures

    International Nuclear Information System (INIS)

    Bao, Gang; Xu, Xiang

    2015-01-01

    This paper is concerned with addressing two significant challenges arising from quantifying mechanical properties of nanomaterials, namely nonuniformity of the nanomaterial and the high noise level of measurements. For nonuniformity, an explicit solution is derived for the general Euler–Bernoulli equation in terms of the Green function for the Poisson equation. Then, by examining a stochastic source, the systematic error may be removed from measurements, which leads to more accurate estimation of mechanical properties. Based on Itô integral properties, three deterministic Fredholm integral equations can be deduced to extract the stiffness and the structure of the random source from measured data. To overcome ill-posedness and high nonlinearity in solving the Fredholm equations, a Tikhonov regularization method is developed with an a priori strategy of choosing the regularization parameter. Moreover, under a regularity assumption for the stiffness coefficient and structures of the random source, the convergence rate can be obtained in the sense of probability. Numerical examples are presented to illustrate the validity and effectiveness of the novel model and regularization method. (paper)

  3. Nonuniform code concatenation for universal fault-tolerant quantum computing

    Science.gov (United States)

    Nikahd, Eesa; Sedighi, Mehdi; Saheb Zamani, Morteza

    2017-09-01

    Using transversal gates is a straightforward and efficient technique for fault-tolerant quantum computing. Since transversal gates alone cannot be computationally universal, they must be combined with other approaches such as magic state distillation, code switching, or code concatenation to achieve universality. In this paper we propose an alternative approach for universal fault-tolerant quantum computing, mainly based on the code concatenation approach proposed in [T. Jochym-O'Connor and R. Laflamme, Phys. Rev. Lett. 112, 010505 (2014), 10.1103/PhysRevLett.112.010505], but in a nonuniform fashion. The proposed approach is described based on nonuniform concatenation of the 7-qubit Steane code with the 15-qubit Reed-Muller code, as well as the 5-qubit code with the 15-qubit Reed-Muller code, which lead to two 49-qubit and 47-qubit codes, respectively. These codes can correct any arbitrary single physical error with the ability to perform a universal set of fault-tolerant gates, without using magic state distillation.

  4. Aligning Mental Representations

    DEFF Research Database (Denmark)

    Kano Glückstad, Fumiko

    2013-01-01

    This work introduces a framework that implements asymmetric communication theory proposed by Sperber and Wilson [1]. The framework applies a generalization model known as the Bayesian model of generalization (BMG) [2] for aligning knowledge possessed by two communicating parties. The work focuses...

  5. MUON DETECTORS: ALIGNMENT

    CERN Multimedia

    G. Gomez and Y. Pakhotin

    2012-01-01

      A new track-based alignment for the DT chambers is ready for deployment: an offline tag has already been produced which will become part of the 52X Global Tag. This alignment was validated within the muon alignment group both at low and high momentum using a W/Z skim sample. It shows an improved mass resolution for pairs of stand-alone muons, improved curvature resolution at high momentum, and improved DT segment extrapolation residuals. The validation workflow for high-momentum muons used to depend solely on the “split cosmics” method, looking at the curvature difference between muon tracks reconstructed in the upper or lower half of CMS. The validation has now been extended to include energetic muons decaying from heavily boosted Zs: the di-muon invariant mass for global and stand-alone muons is reconstructed, and the invariant mass resolution is compared for different alignments. The main areas of development over the next few months will be preparing a new track-based C...

  6. Community Alignment ANADP

    OpenAIRE

    Halbert, Martin; Bicarregui, Juan; Anglada, Lluis; Duranti, Luciana

    2014-01-01

    Aligning National Approaches to Digital Preservation: An Action Assembly Biblioteca de Catalunya (National Library of Catalonia) November 18-20, 2013, Barcelona, Spain Auburn University Council on Library and Information Resources (CLIR) Digital Curation Centre (DCC) Digital Preservation Network (DPN) Joint Information Systems Committee (JISC) University of North Texas Virginia Tech Interuniversity Consortium for Political and Social Research (ICPSR) Innovative Inte...

  7. Discriminative Shape Alignment

    DEFF Research Database (Denmark)

    Loog, M.; de Bruijne, M.

    2009-01-01

    , not taking into account that eventually the shapes are to be assigned to two or more different classes. This work introduces a discriminative variation to well-known Procrustes alignment and demonstrates its benefit over this classical method in shape classification tasks. The focus is on two...

  8. Resource Alignment ANADP

    OpenAIRE

    Grindley, Neil; Cramer, Tom; Schrimpf, Sabine; Wilson, Tom

    2014-01-01

    Aligning National Approaches to Digital Preservation: An Action Assembly Biblioteca de Catalunya (National Library of Catalonia) November 18-20, 2013, Barcelona, Spain Auburn University Council on Library and Information Resources (CLIR) Digital Curation Centre (DCC) Digital Preservation Network (DPN) Joint Information Systems Committee (JISC) University of North Texas Virginia Tech Interuniversity Consortium for Political and Social Research (ICPSR) Innovative Inte...

  9. Capacity Alignment ANADP

    OpenAIRE

    Davidson, Joy; Whitehead, Martha; Molloy, Laura; Molinaro, Mary

    2014-01-01

    Aligning National Approaches to Digital Preservation: An Action Assembly Biblioteca de Catalunya (National Library of Catalonia) November 18-20, 2013, Barcelona, Spain Auburn University Council on Library and Information Resources (CLIR) Digital Curation Centre (DCC) Digital Preservation Network (DPN) Joint Information Systems Committee (JISC) University of North Texas Virginia Tech Interuniversity Consortium for Political and Social Research (ICPSR) Innovative Inte...

  10. ABS: Sequence alignment by scanning

    KAUST Repository

    Bonny, Mohamed Talal

    2011-08-01

    Sequence alignment is an essential tool in almost any computational biology research. It processes large database sequences and considered to be high consumers of computation time. Heuristic algorithms are used to get approximate but fast results. We introduce fast alignment algorithm, called Alignment By Scanning (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the well-known alignment algorithms, the FASTA (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 76% enhancement in alignment score when it is compared with the FASTA Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  11. ABS: Sequence alignment by scanning

    KAUST Repository

    Bonny, Mohamed Talal; Salama, Khaled N.

    2011-01-01

    Sequence alignment is an essential tool in almost any computational biology research. It processes large database sequences and considered to be high consumers of computation time. Heuristic algorithms are used to get approximate but fast results. We introduce fast alignment algorithm, called Alignment By Scanning (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the well-known alignment algorithms, the FASTA (which is heuristic) and the 'Needleman-Wunsch' (which is optimal). The proposed algorithm achieves up to 76% enhancement in alignment score when it is compared with the FASTA Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  12. Fast global sequence alignment technique

    KAUST Repository

    Bonny, Mohamed Talal

    2011-11-01

    Bioinformatics database is growing exponentially in size. Processing these large amount of data may take hours of time even if super computers are used. One of the most important processing tool in Bioinformatics is sequence alignment. We introduce fast alignment algorithm, called \\'Alignment By Scanning\\' (ABS), to provide an approximate alignment of two DNA sequences. We compare our algorithm with the wellknown sequence alignment algorithms, the \\'GAP\\' (which is heuristic) and the \\'Needleman-Wunsch\\' (which is optimal). The proposed algorithm achieves up to 51% enhancement in alignment score when it is compared with the GAP Algorithm. The evaluations are conducted using different lengths of DNA sequences. © 2011 IEEE.

  13. Fluxon dynamics in long Josephson junctions in the presence of a temperature gradient or spatial nonuniformity

    DEFF Research Database (Denmark)

    Krasnov, V.M.; Oboznov, V.A.; Pedersen, Niels Falsig

    1997-01-01

    Fluxon dynamics in nonuniform Josephson junctions was studied both experimentally and theoretically. Two types of nonuniform junctions were considered: the first type had a nonuniform spatial distribution of critical and bias currents and the second had a temperature gradient applied along...... the junction. An analytical expression for the I-V curve in the presence of a temperature gradient or spatial nonuniformity was derived. It was shown that there is no static thermomagnetic Nernst effect due to Josephson fluxon motion despite the existence of a force pushing fluxons in the direction of smaller...

  14. Formatt: Correcting protein multiple structural alignments by incorporating sequence alignment

    Directory of Open Access Journals (Sweden)

    Daniels Noah M

    2012-10-01

    Full Text Available Abstract Background The quality of multiple protein structure alignments are usually computed and assessed based on geometric functions of the coordinates of the backbone atoms from the protein chains. These purely geometric methods do not utilize directly protein sequence similarity, and in fact, determining the proper way to incorporate sequence similarity measures into the construction and assessment of protein multiple structure alignments has proved surprisingly difficult. Results We present Formatt, a multiple structure alignment based on the Matt purely geometric multiple structure alignment program, that also takes into account sequence similarity when constructing alignments. We show that Formatt outperforms Matt and other popular structure alignment programs on the popular HOMSTRAD benchmark. For the SABMark twilight zone benchmark set that captures more remote homology, Formatt and Matt outperform other programs; depending on choice of embedded sequence aligner, Formatt produces either better sequence and structural alignments with a smaller core size than Matt, or similarly sized alignments with better sequence similarity, for a small cost in average RMSD. Conclusions Considering sequence information as well as purely geometric information seems to improve quality of multiple structure alignments, though defining what constitutes the best alignment when sequence and structural measures would suggest different alignments remains a difficult open question.

  15. Temporal high-pass non-uniformity correction algorithm based on grayscale mapping and hardware implementation

    Science.gov (United States)

    Jin, Minglei; Jin, Weiqi; Li, Yiyang; Li, Shuo

    2015-08-01

    In this paper, we propose a novel scene-based non-uniformity correction algorithm for infrared image processing-temporal high-pass non-uniformity correction algorithm based on grayscale mapping (THP and GM). The main sources of non-uniformity are: (1) detector fabrication inaccuracies; (2) non-linearity and variations in the read-out electronics and (3) optical path effects. The non-uniformity will be reduced by non-uniformity correction (NUC) algorithms. The NUC algorithms are often divided into calibration-based non-uniformity correction (CBNUC) algorithms and scene-based non-uniformity correction (SBNUC) algorithms. As non-uniformity drifts temporally, CBNUC algorithms must be repeated by inserting a uniform radiation source which SBNUC algorithms do not need into the view, so the SBNUC algorithm becomes an essential part of infrared imaging system. The SBNUC algorithms' poor robustness often leads two defects: artifacts and over-correction, meanwhile due to complicated calculation process and large storage consumption, hardware implementation of the SBNUC algorithms is difficult, especially in Field Programmable Gate Array (FPGA) platform. The THP and GM algorithm proposed in this paper can eliminate the non-uniformity without causing defects. The hardware implementation of the algorithm only based on FPGA has two advantages: (1) low resources consumption, and (2) small hardware delay: less than 20 lines, it can be transplanted to a variety of infrared detectors equipped with FPGA image processing module, it can reduce the stripe non-uniformity and the ripple non-uniformity.

  16. REPLICATION TOOL AND METHOD OF PROVIDING A REPLICATION TOOL

    DEFF Research Database (Denmark)

    2016-01-01

    The invention relates to a replication tool (1, 1a, 1b) for producing a part (4) with a microscale textured replica surface (5a, 5b, 5c, 5d). The replication tool (1, 1a, 1b) comprises a tool surface (2a, 2b) defining a general shape of the item. The tool surface (2a, 2b) comprises a microscale...... energy directors on flange portions thereof uses the replication tool (1, 1a, 1b) to form an item (4) with a general shape as defined by the tool surface (2a, 2b). The formed item (4) comprises a microscale textured replica surface (5a, 5b, 5c, 5d) with a lateral arrangement of polydisperse microscale...

  17. Capillary Self-Alignment of Microchips on Soft Substrates

    Directory of Open Access Journals (Sweden)

    Bo Chang

    2016-03-01

    Full Text Available Soft micro devices and stretchable electronics have attracted great interest for their potential applications in sensory skins and wearable bio-integrated devices. One of the most important steps in building printed circuits is the alignment of assembled micro objects. Previously, the capillary self-alignment of microchips driven by surface tension effects has been shown to be able to achieve high-throughput and high-precision in the integration of micro parts on rigid hydrophilic/superhydrophobic patterned surfaces. In this paper, the self-alignment of microchips on a patterned soft and stretchable substrate, which consists of hydrophilic pads surrounded by a superhydrophobic polydimethylsiloxane (PDMS background, is demonstrated for the first time. A simple process has been developed for making superhydrophobic soft surface by replicating nanostructures of black silicon onto a PDMS surface. Different kinds of PDMS have been investigated, and the parameters for fabricating superhydrophobic PDMS have been optimized. A self-alignment strategy has been proposed that can result in reliable self-alignment on a soft PDMS substrate. Our results show that capillary self-alignment has great potential for building soft printed circuits.

  18. Alignment of concerns

    DEFF Research Database (Denmark)

    Andersen, Tariq Osman; Bansler, Jørgen P.; Kensing, Finn

    E-health promises to enable and support active patient participation in chronic care. However, these fairly recent innovations are complicated matters and emphasize significant challenges, such as patients’ and clinicians’ different ways of conceptualizing disease and illness. Informed by insight...... from medical phenomenology and our own empirical work in telemonitoring and medical care of heart patients, we propose a design rationale for e-health systems conceptualized as the ‘alignment of concerns’....

  19. Effective electrodiffusion equation for non-uniform nanochannels.

    Science.gov (United States)

    Marini Bettolo Marconi, Umberto; Melchionna, Simone; Pagonabarraga, Ignacio

    2013-06-28

    We derive a one-dimensional formulation of the Planck-Nernst-Poisson equation to describe the dynamics of a symmetric binary electrolyte in channels whose section is nanometric and varies along the axial direction. The approach is in the spirit of the Fick-Jacobs diffusion equation and leads to a system of coupled equations for the partial densities which depends on the charge sitting at the walls in a non-trivial fashion. We consider two kinds of non-uniformities, those due to the spatial variation of charge distribution and those due to the shape variation of the pore and report one- and three-dimensional solutions of the electrokinetic equations.

  20. Vacuum polarisation in some static nonuniform magnetic fields

    Energy Technology Data Exchange (ETDEWEB)

    Calucci, G. [Trieste Univ. (Italy). Dip. di Fisica Teorica]|[INFN, Trieste (Italy)

    1995-11-01

    Vacuum polarisation in QED in presence of some configurations of external magnetic fields is investigated. The configuration considered correspond to fields is investigated. The configuration considered correspond to fields lying in a plane and without sources. The motion of a Dirac electron in this field configuration is studied and arguments are found to conclude that the lowest level gives the most important contribution. The result is that the main effect is not very different from the uniform case, the possibilities of calculating the corrections due to the uniformity is explicitly shown. A typical effect of nonuniformity of the field shows out in the refractivity of the field shows out in the refractivity of the vacuum.

  1. Decomposed Photo Response Non-Uniformity for Digital Forensic Analysis

    Science.gov (United States)

    Li, Yue; Li, Chang-Tsun

    The last few years have seen the applications of Photo Response Non-Uniformity noise (PRNU) - a unique stochastic fingerprint of image sensors, to various types of digital forensic investigations such as source device identification and integrity verification. In this work we proposed a new way of extracting PRNU noise pattern, called Decomposed PRNU (DPRNU), by exploiting the difference between the physical andartificial color components of the photos taken by digital cameras that use a Color Filter Array for interpolating artificial components from physical ones. Experimental results presented in this work have shown the superiority of the proposed DPRNU to the commonly used version. We also proposed a new performance metrics, Corrected Positive Rate (CPR) to evaluate the performance of the common PRNU and the proposed DPRNU.

  2. Gamma camera system with improved means for correcting nonuniformity

    International Nuclear Information System (INIS)

    Lange, K.; Jeppesen, J.

    1979-01-01

    In a gamma camera system, means are provided for correcting nonuniformity or lack of correspondence between the positions of scintillations and their calculated and displayed by x-y coordinates. In an accumulation mode, pulse counts corresponding with scintillations in various areas of the radiation field are stored in memory locations corresponding with their locations in the radiation field. A uniform radiation source is presented to the detectors during the accumulation is interrupted at which time other locations have fewer counts in them. In the run mode, counts are stored in corresponding locations of a memory and these counts are compared continuously with those stored in the accumulation mode. Means are provided for injecting a number of counts during the run mode proportional to the difference between the counts accumulated during the accumulation mode in a given area increment and the counts that should have been obtained from a uniform source

  3. Non-uniform plastic deformation of micron scale objects

    DEFF Research Database (Denmark)

    Niordson, Christian Frithiof; Hutchinson, J. W.

    2003-01-01

    Significant increases in apparent flow strength are observed when non-uniform plastic deformation of metals occurs at the scale ranging from roughly one to ten microns. Several basic plane strain problems are analyzed numerically in this paper based on a new formulation of strain gradient...... plasticity. The problems are the tangential and normal loading of a finite rectangular block of material bonded to rigid platens and having traction-free ends, and the normal loading of a half-space by a flat, rigid punch. The solutions illustrate fundamental features of plasticity at the micron scale...... that are not captured by conventional plasticity theory. These include the role of material length parameters in establishing the size dependence of strength and the elevation of resistance to plastic flow resulting from constraint on plastic flow at boundaries. Details of the finite element method employed...

  4. Non-Uniform Heat Transfer in Thermal Regenerators

    DEFF Research Database (Denmark)

    Jensen, Jesper Buch

    , a numerical model, which simulates a single-blow operation in a parallel-plate regenerator, was developed and used to model the heat transfer under various conditions. In addition to the modeling of the heat transfer, a series of experiments on passive regenerators with non-uniform, but precisely controlled....... Additionally, the experiments gave real comparative results, whereas the model to a certain degree more served to provide insight to the heat transfer processes taking place inside the regenera- tors, something that would be - if not impossible - then highly impractical to do experimentally. It has been found......This thesis presents investigations on the heat transfer in complex heat ex- changers in general and in regenerative heat exchangers (regenerators) in par- ticular. The motivation for this work is a result of inconsistencies obeserved in the results from a series of experiments on active magnetic...

  5. A tuning method for nonuniform traveling-wave accelerating structures

    International Nuclear Information System (INIS)

    Gong Cunkui; Zheng Shuxin; Shao Jiahang; Jia Xiaoyu; Chen Huaibi

    2013-01-01

    The tuning method of uniform traveling-wave structures based on non-resonant perturbation field distribution measurement has been widely used in tuning both constant-impedance and constant-gradient structures. In this paper, the method of tuning nonuniform structures is proposed on the basis of the above theory. The internal reflection coefficient of each cell is obtained from analyzing the normalized voltage distribution. A numerical simulation of tuning process according to the coupled cavity chain theory has been done and the result shows each cell is in right phase advance after tuning. The method will be used in the tuning of a disk-loaded traveling-wave structure being developed at the Accelerator Laboratory, Tsinghua University. (authors)

  6. Vacuum polarisation in some static nonuniform magnetic fields

    International Nuclear Information System (INIS)

    Calucci, G.

    1995-11-01

    Vacuum polarisation in QED in presence of some configurations of external magnetic fields is investigated. The configuration considered correspond to fields is investigated. The configuration considered correspond to fields lying in a plane and without sources. The motion of a Dirac electron in this field configuration is studied and arguments are found to conclude that the lowest level gives the most important contribution. The result is that the main effect is not very different from the uniform case, the possibilities of calculating the corrections due to the uniformity is explicitly shown. A typical effect of nonuniformity of the field shows out in the refractivity of the field shows out in the refractivity of the vacuum

  7. Alignment at the ESRF

    International Nuclear Information System (INIS)

    Martin, D.; Levet, N.; Gatta, G.

    1999-01-01

    The ESRF Survey and Alignment group is responsible for the installation, control and periodic realignment of the accelerators and experiments which produce high quality x-rays used by scientists from Europe and around the world. Alignment tolerances are typically less than one millimetre and often in the order of several micrometers. The group is composed of one engineer, five highly trained survey technicians, one electronic and one computer technician. This team is fortified during peak periods by technicians from an external survey company. First an overview and comparative study of the main large-scale survey instrumentation and methods used by the group is made. Secondly a discussion of long term deformation on the ESRF site is presented. This is followed by presentation of the methods used in the realignment of the various machines. Two important aspects of our work, beamline and front-end alignment, and the so-called machine exotic devices are briefly discussed. Finally, the ESRF calibration bench is presented. (authors)

  8. Seeking the perfect alignment

    CERN Multimedia

    2002-01-01

    The first full-scale tests of the ATLAS Muon Spectrometer are about to begin in Prévessin. The set-up includes several layers of Monitored Drift Tubes Chambers (MDTs) and will allow tests of the performance of the detectors and of their highly accurate alignment system.   Monitored Drift Chambers in Building 887 in Prévessin, where they are just about to be tested. Muon chambers are keeping the ATLAS Muon Spectrometer team quite busy this summer. Now that most people go on holiday, the beam and alignment tests for these chambers are just starting. These chambers will measure with high accuracy the momentum of high-energy muons, and this implies very demanding requirements for their alignment. The MDT chambers consist of drift tubes, which are gas-filled metal tubes, 3 cm in diameter, with wires running down their axes. With high voltage between the wire and the tube wall, the ionisation due to traversing muons is detected as electrical pulses. With careful timing of the pulses, the position of the muon t...

  9. Analyte preconcentration in nanofluidic channels with nonuniform zeta potential

    Science.gov (United States)

    Eden, A.; McCallum, C.; Storey, B. D.; Pennathur, S.; Meinhart, C. D.

    2017-12-01

    It is well known that charged analytes in the presence of nonuniform electric fields concentrate at locations where the relevant driving forces balance, and a wide range of ionic stacking and focusing methods are commonly employed to leverage these physical mechanisms in order to improve signal levels in biosensing applications. In particular, nanofluidic channels with spatially varying conductivity distributions have been shown to provide increased preconcentration of charged analytes due to the existence of a finite electric double layer (EDL), in which electrostatic attraction and repulsion from charged surfaces produce nonuniform transverse ion distributions. In this work, we use numerical simulations to show that one can achieve greater levels of sample accumulation by using field-effect control via wall-embedded electrodes to tailor the surface potential heterogeneity in a nanochannel with overlapped EDLs. In addition to previously demonstrated stacking and focusing mechanisms, we find that the coupling between two-dimensional ion distributions and the axial electric field under overlapped EDL conditions can generate an ion concentration polarization interface in the middle of the channel. Under an applied electric field, this interface can be used to concentrate sample ions between two stationary regions of different surface potential and charge density. Our numerical model uses the Poisson-Nernst-Planck system of equations coupled with the Stokes equation to demonstrate the phenomenon, and we discuss in detail the driving forces behind the predicted sample enhancement. The numerical velocity and salt concentration profiles exhibit good agreement with analytical results from a simplified one-dimensional area-averaged model for several limiting cases, and we show predicted amplification ratios of up to 105.

  10. Restoration of non-uniform exposure motion blurred image

    Science.gov (United States)

    Luo, Yuanhong; Xu, Tingfa; Wang, Ningming; Liu, Feng

    2014-11-01

    Restoring motion-blurred image is the key technologies in the opto-electronic detection system. The imaging sensors such as CCD and infrared imaging sensor, which are mounted on the motion platforms, quickly move together with the platforms of high speed. As a result, the images become blur. The image degradation will cause great trouble for the succeeding jobs such as objects detection, target recognition and tracking. So the motion-blurred images must be restoration before detecting motion targets in the subsequent images. On the demand of the real weapon task, in order to deal with targets in the complex background, this dissertation uses the new theories in the field of image processing and computer vision to research the new technology of motion deblurring and motion detection. The principle content is as follows: 1) When the prior knowledge about degradation function is unknown, the uniform motion blurred images are restored. At first, the blur parameters, including the motion blur extent and direction of PSF(point spread function), are estimated individually in domain of logarithmic frequency. The direction of PSF is calculated by extracting the central light line of the spectrum, and the extent is computed by minimizing the correction between the fourier spectrum of the blurred image and a detecting function. Moreover, in order to remove the strip in the deblurred image, windows technique is employed in the algorithm, which makes the deblurred image clear. 2) According to the principle of infrared image non-uniform exposure, a new restoration model for infrared blurred images is developed. The fitting of infrared image non-uniform exposure curve is performed by experiment data. The blurred images are restored by the fitting curve.

  11. THE INFLUENCE OF NONUNIFORM CLOUD COVER ON TRANSIT TRANSMISSION SPECTRA

    Energy Technology Data Exchange (ETDEWEB)

    Line, Michael R. [NASA Ames Research Center, Moffet Field, CA 94035 (United States); Parmentier, Vivien, E-mail: mrline@ucsc.edu [Department of Astronomy and Astrophysics, University of California–Santa Cruz, 1156 High Street, Santa Cruz, CA 95064 (United States)

    2016-03-20

    We model the impact of nonuniform cloud cover on transit transmission spectra. Patchy clouds exist in nearly every solar system atmosphere, brown dwarfs, and transiting exoplanets. Our major findings suggest that fractional cloud coverage can exactly mimic high mean molecular weight atmospheres and vice versa over certain wavelength regions, in particular, over the Hubble Space Telescope (HST) Wide Field Camera 3 (WFC3) bandpass (1.1–1.7 μm). We also find that patchy cloud coverage exhibits a signature that is different from uniform global clouds. Furthermore, we explain analytically why the “patchy cloud-high mean molecular weight” degeneracy exists. We also explore the degeneracy of nonuniform cloud coverage in atmospheric retrievals on both synthetic and real planets. We find from retrievals on a synthetic solar composition hot Jupiter with patchy clouds and a cloud-free high mean molecular weight warm Neptune that both cloud-free high mean molecular weight atmospheres and partially cloudy atmospheres can explain the data equally well. Another key finding is that the HST WFC3 transit transmission spectra of two well-observed objects, the hot Jupiter HD 189733b and the warm Neptune HAT-P-11b, can be explained well by solar composition atmospheres with patchy clouds without the need to invoke high mean molecular weight or global clouds. The degeneracy between high molecular weight and solar composition partially cloudy atmospheres can be broken by observing the molecular Rayleigh scattering differences between the two. Furthermore, the signature of partially cloudy limbs also appears as a ∼100 ppm residual in the ingress and egress of the transit light curves, provided that the transit timing is known to seconds.

  12. Radio-frequency properties of stacked long Josephson junctions with nonuniform bias current distribution

    DEFF Research Database (Denmark)

    Filatrella, G; Pedersen, Niels Falsig

    1999-01-01

    We have numerically investigated the behavior of stacks of long Josephson junctions considering a nonuniform bias profile. In the presence of a microwave field the nonuniform bias, which favors the formation of fluxons, can give rise to a change of the sequence of radio-frequency induced steps...

  13. To the problem of spatial focusing of ultracold neutrons by nonuniform magnetic field. Eikonal approximation

    CERN Document Server

    Chen, T

    2002-01-01

    Motion of the ultracold neutrons in the nonuniform magnetic field with a square nonuniformity by two coordinates is considered. The Schroedinger equation is solved with application of the quasi-classical (eikonal) approach. The theoretical possibility of the neutrons spatial focusing with formation of the point focus and also the neutrons bunches is shown

  14. Testing for Nonuniform Differential Item Functioning with Multiple Indicator Multiple Cause Models

    Science.gov (United States)

    Woods, Carol M.; Grimm, Kevin J.

    2011-01-01

    In extant literature, multiple indicator multiple cause (MIMIC) models have been presented for identifying items that display uniform differential item functioning (DIF) only, not nonuniform DIF. This article addresses, for apparently the first time, the use of MIMIC models for testing both uniform and nonuniform DIF with categorical indicators. A…

  15. Parallel processing and non-uniform grids in global air quality modeling

    NARCIS (Netherlands)

    Berkvens, P.J.F.; Bochev, Mikhail A.

    2002-01-01

    A large-scale global air quality model, running efficiently on a single vector processor, is enhanced to make more realistic and more long-term simulations feasible. Two strategies are combined: non-uniform grids and parallel processing. The communication through the hierarchy of non-uniform grids

  16. PARTIAL ERUPTION OF A FILAMENT WITH TWISTING NON-UNIFORM FIELDS

    International Nuclear Information System (INIS)

    Bi, Yi; Jiang, Yunchun; Yang, Jiayan; Xiang, Yongyuan; Cai, Yunfang; Liu, Weiwei

    2015-01-01

    The eruption of a filament in a kinklike fashion is often regarded as a signature of kink instability. However, the kink instability threshold for the filament’s magnetic structure is not widely understood. Using Hα observations from the New Vacuum Solar Telescope, we present a partial eruptive filament. During the eruption, the filament thread appeared to split from its middle and to break out in a kinklike fashion. In this period, the remaining filament material stayed below and erupted without the kinking motion later on. The coronal magnetic field lines associated with the filament are obtained from nonlinear force-free field extrapolations using the twelve-minute-cadence vector magnetograms of the Helioseismic and Magnetic Imager (HMI) on board the Solar Dynamic Observatory. We studied the extrapolated field lines passing through the magnetic dips which are in good agreement with the observed filament. The field lines are non-uniformly twisted and appear to be composed of two twisted flux ropes winding around each other. One of them has a higher twist than the other, and the flux rope with the higher twist has its dips aligned with the kinking eruptive thread at the beginning of its eruption. Before the eruption, moreover, the flux rope with the higher twist was found to expand with an approximately constant field twist. In addition, the helicity flux maps deduced from the HMI magnetograms show that some helicity is injected into the overlying magnetic arcade, but no significant helicity is injected into the flux ropes. Accordingly, we suggest that the highly twisted flux rope became kink unstable when the instability threshold declined with the expansion of the flux rope

  17. Biomarkers of replicative senescence revisited

    DEFF Research Database (Denmark)

    Nehlin, Jan

    2016-01-01

    Biomarkers of replicative senescence can be defined as those ultrastructural and physiological variations as well as molecules whose changes in expression, activity or function correlate with aging, as a result of the gradual exhaustion of replicative potential and a state of permanent cell cycle...... arrest. The biomarkers that characterize the path to an irreversible state of cell cycle arrest due to proliferative exhaustion may also be shared by other forms of senescence-inducing mechanisms. Validation of senescence markers is crucial in circumstances where quiescence or temporary growth arrest may...... be triggered or is thought to be induced. Pre-senescence biomarkers are also important to consider as their presence indicate that induction of aging processes is taking place. The bona fide pathway leading to replicative senescence that has been extensively characterized is a consequence of gradual reduction...

  18. Regulation of beta cell replication

    DEFF Research Database (Denmark)

    Lee, Ying C; Nielsen, Jens Høiriis

    2008-01-01

    Beta cell mass, at any given time, is governed by cell differentiation, neogenesis, increased or decreased cell size (cell hypertrophy or atrophy), cell death (apoptosis), and beta cell proliferation. Nutrients, hormones and growth factors coupled with their signalling intermediates have been...... suggested to play a role in beta cell mass regulation. In addition, genetic mouse model studies have indicated that cyclins and cyclin-dependent kinases that determine cell cycle progression are involved in beta cell replication, and more recently, menin in association with cyclin-dependent kinase...... inhibitors has been demonstrated to be important in beta cell growth. In this review, we consider and highlight some aspects of cell cycle regulation in relation to beta cell replication. The role of cell cycle regulation in beta cell replication is mostly from studies in rodent models, but whether...

  19. Non-uniformity calibration for MWIR polarization imagery obtained with integrated microgrid polarimeters

    Science.gov (United States)

    Liu, Hai-Zheng; Shi, Ze-Lin; Feng, Bin; Hui, Bin; Zhao, Yao-Hong

    2016-03-01

    Integrating microgrid polarimeters on focal plane array (FPA) of an infrared detector causes non-uniformity of polarization response. In order to reduce the effect of polarization non-uniformity, this paper constructs an experimental setup for capturing raw flat-field images and proposes a procedure for acquiring non-uniform calibration (NUC) matrix and calibrating raw polarization images. The proposed procedure takes the incident radiation as a polarization vector and offers a calibration matrix for each pixel. Both our matrix calibration and two-point calibration are applied to our mid-wavelength infrared (MWIR) polarization imaging system with integrated microgrid polarimeters. Compared with two point calibration, our matrix calibration reduces non-uniformity by 30 40% under condition of flat-field data test with polarization. The ourdoor scene observation experiment indicates that our calibration can effectively reduce polarization non-uniformity and improve the image quality of our MWIR polarization imaging system.

  20. Wastewater diffusive dilution and sedimentation of the fine contaminated particles for nonuniform flow in open channels

    Directory of Open Access Journals (Sweden)

    Lyapin Anton

    2018-01-01

    Full Text Available The influence of non-uniformity on mass transfer processes in open channels have been investigated under the action of urbanization factors. The study is related to the urgent problem of environmental degradation of water objects in urbanized areas. It is known that the water quality in the water objects depends on the manner in which the contaminants spread how they mix with the river water and diluted by it. The main results of the study consist of recommendations to incorporate non-uniformity factor to the calculation of diffusion dilution of wastewater and prediction of river processes. So the effect of the flow non-uniformity on the diffusion model of pollutants dilution and diffusion coefficient have been investigated. Formulas for the concentration profiles calculating and the average concentration of fine particulate matter in nonuniform gradually varied flow were presented. The deposition length of suspended contaminants were received, based on the hydraulic resistance laws of nonuniform gradually varied flow.

  1. Personality and Academic Motivation: Replication, Extension, and Replication

    Science.gov (United States)

    Jones, Martin H.; McMichael, Stephanie N.

    2015-01-01

    Previous work examines the relationships between personality traits and intrinsic/extrinsic motivation. We replicate and extend previous work to examine how personality may relate to achievement goals, efficacious beliefs, and mindset about intelligence. Approximately 200 undergraduates responded to the survey with a 150 participants replicating…

  2. The CMS Muon System Alignment

    CERN Document Server

    Martinez Ruiz-Del-Arbol, P

    2009-01-01

    The alignment of the muon system of CMS is performed using different techniques: photogrammetry measurements, optical alignment and alignment with tracks. For track-based alignment, several methods are employed, ranging from a hit and impact point (HIP) algorithm and a procedure exploiting chamber overlaps to a global fit method based on the Millepede approach. For start-up alignment as long as available integrated luminosity is still significantly limiting the size of the muon sample from collisions, cosmic muon and beam halo signatures play a very strong role. During the last commissioning runs in 2008 the first aligned geometries have been produced and validated with data. The CMS offline computing infrastructure has been used in order to perform improved reconstructions. We present the computational aspects related to the calculation of alignment constants at the CERN Analysis Facility (CAF), the production and population of databases and the validation and performance in the official reconstruction. Also...

  3. Clear aligners in orthodontic treatment.

    Science.gov (United States)

    Weir, T

    2017-03-01

    Since the introduction of the Tooth Positioner (TP Orthodontics) in 1944, removable appliances analogous to clear aligners have been employed for mild to moderate orthodontic tooth movements. Clear aligner therapy has been a part of orthodontic practice for decades, but has, particularly since the introduction of Invisalign appliances (Align Technology) in 1998, become an increasingly common addition to the orthodontic armamentarium. An internet search reveals at least 27 different clear aligner products currently on offer for orthodontic treatment. The present paper will highlight the increasing popularity of clear aligner appliances, as well as the clinical scope and the limitations of aligner therapy in general. Further, the paper will outline the differences between the various types of clear aligner products currently available. © 2017 Australian Dental Association.

  4. Alignment of time-resolved data from high throughput experiments.

    Science.gov (United States)

    Abidi, Nada; Franke, Raimo; Findeisen, Peter; Klawonn, Frank

    2016-12-01

    To better understand the dynamics of the underlying processes in cells, it is necessary to take measurements over a time course. Modern high-throughput technologies are often used for this purpose to measure the behavior of cell products like metabolites, peptides, proteins, [Formula: see text]RNA or mRNA at different points in time. Compared to classical time series, the number of time points is usually very limited and the measurements are taken at irregular time intervals. The main reasons for this are the costs of the experiments and the fact that the dynamic behavior usually shows a strong reaction and fast changes shortly after a stimulus and then slowly converges to a certain stable state. Another reason might simply be missing values. It is common to repeat the experiments and to have replicates in order to carry out a more reliable analysis. The ideal assumptions that the initial stimulus really started exactly at the same time for all replicates and that the replicates are perfectly synchronized are seldom satisfied. Therefore, there is a need to first adjust or align the time-resolved data before further analysis is carried out. Dynamic time warping (DTW) is considered as one of the common alignment techniques for time series data with equidistant time points. In this paper, we modified the DTW algorithm so that it can align sequences with measurements at different, non-equidistant time points with large gaps in between. This type of data is usually known as time-resolved data characterized by irregular time intervals between measurements as well as non-identical time points for different replicates. This new algorithm can be easily used to align time-resolved data from high-throughput experiments and to come across existing problems such as time scarcity and existing noise in the measurements. We propose a modified method of DTW to adapt requirements imposed by time-resolved data by use of monotone cubic interpolation splines. Our presented approach

  5. Chameleon Chasing II: A Replication.

    Science.gov (United States)

    Newsom, Doug A.; And Others

    1993-01-01

    Replicates a 1972 survey of students, educators, and Public Relations Society of America members regarding who the public relations counselor really serves. Finds that, in 1992, most respondents thought primary responsibility was to the client, then to the client's relevant publics, then to self, then to society, and finally to media. Compares…

  6. Hyperthermia stimulates HIV-1 replication.

    Directory of Open Access Journals (Sweden)

    Ferdinand Roesch

    Full Text Available HIV-infected individuals may experience fever episodes. Fever is an elevation of the body temperature accompanied by inflammation. It is usually beneficial for the host through enhancement of immunological defenses. In cultures, transient non-physiological heat shock (42-45°C and Heat Shock Proteins (HSPs modulate HIV-1 replication, through poorly defined mechanisms. The effect of physiological hyperthermia (38-40°C on HIV-1 infection has not been extensively investigated. Here, we show that culturing primary CD4+ T lymphocytes and cell lines at a fever-like temperature (39.5°C increased the efficiency of HIV-1 replication by 2 to 7 fold. Hyperthermia did not facilitate viral entry nor reverse transcription, but increased Tat transactivation of the LTR viral promoter. Hyperthermia also boosted HIV-1 reactivation in a model of latently-infected cells. By imaging HIV-1 transcription, we further show that Hsp90 co-localized with actively transcribing provirus, and this phenomenon was enhanced at 39.5°C. The Hsp90 inhibitor 17-AAG abrogated the increase of HIV-1 replication in hyperthermic cells. Altogether, our results indicate that fever may directly stimulate HIV-1 replication, in a process involving Hsp90 and facilitation of Tat-mediated LTR activity.

  7. Adressing Replication and Model Uncertainty

    DEFF Research Database (Denmark)

    Ebersberger, Bernd; Galia, Fabrice; Laursen, Keld

    innovation survey data for France, Germany and the UK, we conduct a ‘large-scale’ replication using the Bayesian averaging approach of classical estimators. Our method tests a wide range of determinants of innovation suggested in the prior literature, and establishes a robust set of findings on the variables...

  8. Replication of kinetoplast minicircle DNA

    International Nuclear Information System (INIS)

    Sheline, C.T.

    1989-01-01

    These studies describe the isolation and characterization of early minicircle replication intermediates from Crithidia fasciculata, and Leishmania tarentolae, the mitochondrial localization of a type II topoisomerase (TIImt) in C. fasciculata, and the implication of the aforementioned TIImt in minicircle replication in L. tarentolae. Early minicircle replication intermediates from C. fasciculata were identified and characterized using isolated kinetoplasts to incorporate radiolabeled nucleotides into its DNA. The pulse-label in an apparent theta-type intermediate chase into two daughter molecules. A uniquely gapped, ribonucleotide primed, knotted molecule represents the leading strand in the model proposed, and a highly gapped molecule represents the lagging strand. This theta intermediate is repaired in vitro to a doubly nicked catenated dimer which was shown to result from the replication of a single parental molecule. Very similar intermediates were found in the heterogeneous population of minicircles of L. tarentolae. The sites of the Leishmania specific discontinuities were mapped and shown to lie within the universally conserved sequence blocks in identical positions as compared to C. fasciculata and Trypanosoma equiperdum

  9. Manual of Cupule Replication Technology

    Directory of Open Access Journals (Sweden)

    Giriraj Kumar

    2015-09-01

    Full Text Available Throughout the world, iconic rock art is preceded by non-iconic rock art. Cupules (manmade, roughly semi-hemispherical depressions on rocks form the major bulk of the early non-iconic rock art globally. The antiquity of cupules extends back to the Lower Paleolithic in Asia and Africa, hundreds of thousand years ago. When one observes these cupules, the inquisitive mind poses so many questions with regard to understanding their technology, reasons for selecting the site, which rocks were used to make the hammer stones used, the skill and cognitive abilities employed to create the different types of cupules, the objective of their creation, their age, and so on. Replication of the cupules can provide satisfactory answers to some of these questions. Comparison of the hammer stones and cupules produced by the replication process with those obtained from excavation can provide support to observations. This paper presents a manual of cupule replication technology based on our experience of cupule replication on hard quartzite rock near Daraki-Chattan in the Chambal Basin, India.

  10. Crinivirus replication and host interactions

    Directory of Open Access Journals (Sweden)

    Zsofia A Kiss

    2013-05-01

    Full Text Available Criniviruses comprise one of the genera within the family Closteroviridae. Members in this family are restricted to the phloem and rely on whitefly vectors of the genera Bemisia and/or Trialeurodes for plant-to-plant transmission. All criniviruses have bipartite, positive-sense ssRNA genomes, although there is an unconfirmed report of one having a tripartite genome. Lettuce infectious yellows virus (LIYV is the type species of the genus, the best studied so far of the criniviruses and the first for which a reverse genetics system was available. LIYV RNA 1 encodes for proteins predicted to be involved in replication, and alone is competent for replication in protoplasts. Replication results in accumulation of cytoplasmic vesiculated membranous structures which are characteristic of most studied members of the Closteroviridae. These membranous structures, often referred to as BYV-type vesicles, are likely sites of RNA replication. LIYV RNA 2 is replicated in trans when co-infecting cells with RNA 1, but is temporally delayed relative to RNA1. Efficient RNA 2 replication also is dependent on the RNA 1-encoded RNA binding protein, P34. No LIYV RNA 2-encoded proteins have been shown to affect RNA replication, but at least four, CP, CPm, Hsp70h, and p59 are virion structural components and CPm is a determinant of whitefly transmissibility. Roles of other LIYV RNA 2-encoded proteins are largely as yet unknown, but P26 is a non-virion protein that accumulates in cells as characteristic plasmalemma deposits which in plants are localized within phloem parenchyma and companion cells over plasmodesmata connections to sieve elements. The two remaining crinivirus-conserved RNA 2-encoded proteins are P5 and P9. P5 is 39 amino acid protein and is encoded at the 5’ end of RNA 2 as ORF1 and is part of the hallmark closterovirus gene array. The orthologous gene in BYV has been shown to play a role in cell-to-cell movement and indicated to be localized to the

  11. Pareto optimal pairwise sequence alignment.

    Science.gov (United States)

    DeRonne, Kevin W; Karypis, George

    2013-01-01

    Sequence alignment using evolutionary profiles is a commonly employed tool when investigating a protein. Many profile-profile scoring functions have been developed for use in such alignments, but there has not yet been a comprehensive study of Pareto optimal pairwise alignments for combining multiple such functions. We show that the problem of generating Pareto optimal pairwise alignments has an optimal substructure property, and develop an efficient algorithm for generating Pareto optimal frontiers of pairwise alignments. All possible sets of two, three, and four profile scoring functions are used from a pool of 11 functions and applied to 588 pairs of proteins in the ce_ref data set. The performance of the best objective combinations on ce_ref is also evaluated on an independent set of 913 protein pairs extracted from the BAliBASE RV11 data set. Our dynamic-programming-based heuristic approach produces approximated Pareto optimal frontiers of pairwise alignments that contain comparable alignments to those on the exact frontier, but on average in less than 1/58th the time in the case of four objectives. Our results show that the Pareto frontiers contain alignments whose quality is better than the alignments obtained by single objectives. However, the task of identifying a single high-quality alignment among those in the Pareto frontier remains challenging.

  12. Some Analytical Properties of the Model for Stochastic Evolutionary Games in Finite Populations with Non-uniform Interaction Rate

    International Nuclear Information System (INIS)

    Quan Ji; Wang Xianjia

    2013-01-01

    Traditional evolutionary games assume uniform interaction rate, which means that the rate at which individuals meet and interact is independent of their strategies. But in some systems, especially biological systems, the players interact with each other discriminately. Taylor and Nowak (2006) were the first to establish the corresponding non-uniform interaction rate model by allowing the interaction rates to depend on strategies. Their model is based on replicator dynamics which assumes an infinite size population. But in reality, the number of individuals in the population is always finite, and there will be some random interference in the individuals' strategy selection process. Therefore, it is more practical to establish the corresponding stochastic evolutionary model in finite populations. In fact, the analysis of evolutionary games in a finite size population is more difficult. Just as Taylor and Nowak said in the outlook section of their paper, ''The analysis of non-uniform interaction rates should be extended to stochastic game dynamics of finite populations''. In this paper, we are exactly doing this work. We extend Taylor and Nowak's model from infinite to finite case, especially focusing on the infiuence of non-uniform connection characteristics on the evolutionary stable state of the system. We model the strategy evolutionary process of the population by a continuous ergodic Markov process. Based on the limit distribution of the process, we can give the evolutionary stable state of the system. We make a complete classification of the symmetric 2 × 2 games. For each case game, the corresponding limit distribution of the Markov-based process is given when noise intensity is small enough. In contrast with most literatures in evolutionary games using the simulation method, all our results obtained are analytical. Especially, in the dominant-case game, coexistence of the two strategies may become evolutionary stable states in our model. This result can be

  13. Pumping tests in nonuniform aquifers - The radially symmetric case

    Science.gov (United States)

    Butler, J.J.

    1988-01-01

    tests in nonuniform aquifers. The relative diffusivity of material on either side of a discontinuity is shown to be the major factor in controlling flow behavior during the period in which the front of the cone of depression is moving across the discontinuity. Though resulting from an analysis of flow in an idealized configuration, the insights of this work into flow behavior during a pumping test are applicable to a wide class of nonuniform units. ?? 1988.

  14. Degradation nonuniformity in the solar diffuser bidirectional reflectance distribution function.

    Science.gov (United States)

    Sun, Junqiang; Chu, Mike; Wang, Menghua

    2016-08-01

    The assumption of angular dependence stability of the solar diffuser (SD) throughout degradation is critical to the on-orbit calibration of the reflective solar bands (RSBs) in many satellite sensors. Recent evidence has pointed to the contrary, and in this work, we present a thorough investigative effort into the angular dependence of the SD degradation for the Visible Infrared Imaging Radiometer Suite (VIIRS) onboard the Suomi National Polar-orbiting Partnership (SNPP) satellite and for the twin Moderate-resolution Imaging Spectroradiometer (MODIS) onboard Terra and Aqua spacecrafts. One common key step in the RSB calibration is the use of the SD degradation performance measured by an accompanying solar diffuser stability monitor (SDSM) as a valid substitute for the SD degradation factor in the direction of the RSB view. If SD degradations between these two respective directions do not maintain the same relative relationship over time, then the unmitigated use of the SDSM-measured SD degradation factor in the RSB calibration calculation will generate bias, and consequently, long-term drift in derived science products. We exploit the available history of the on-orbit calibration events to examine the response of the SDSM and the RSB detectors to the incident illumination reflecting off SD versus solar declination angle and show that the angular dependency, particularly at short wavelengths, evolves with respect to time. The generalized and the decisive conclusion is that the bidirectional reflectance distribution function (BRDF) of the SD degrades nonuniformly with respect to both incident and outgoing directions. Thus, the SDSM-based measurements provide SD degradation factors that are biased relative to the RSB view direction with respect to the SD. The analysis also reveals additional interesting phenomena, for example, the sharp behavioral change in the evolving angular dependence observed in Terra MODIS and SNPP VIIRS. For SNPP VIIRS the mitigation for this

  15. All about alignment

    CERN Multimedia

    2006-01-01

    The ALICE absorbers, iron wall and superstructure have been installed with great precision. The ALICE front absorber, positioned in the centre of the detector, has been installed and aligned. Weighing more than 400 tonnes, the ALICE absorbers and the surrounding support structures have been installed and aligned with a precision of 1-2 mm, hardly an easy task but a very important one. The ALICE absorbers are made of three parts: the front absorber, a 35-tonne cone-shaped structure, and two small-angle absorbers, long straight cylinder sections weighing 18 and 40 tonnes. The three pieces lined up have a total length of about 17 m. In addition to these, ALICE technicians have installed a 300-tonne iron filter wall made of blocks that fit together like large Lego pieces and a surrounding metal support structure to hold the tracking and trigger chambers. The absorbers house the vacuum chamber and are also the reference surface for the positioning of the tracking and trigger chambers. For this reason, the ab...

  16. Further Development of Ko Displacement Theory for Deformed Shape Predictions of Nonuniform Aerospace Structures

    Science.gov (United States)

    Ko, William L.; Fleischer, Van Tran

    2009-01-01

    The Ko displacement theory previously formulated for deformed shape predictions of nonuniform beam structures is further developed mathematically. The further-developed displacement equations are expressed explicitly in terms of geometrical parameters of the beam and bending strains at equally spaced strain-sensing stations along the multiplexed fiber-optic sensor line installed on the bottom surface of the beam. The bending strain data can then be input into the displacement equations for calculations of local slopes, deflections, and cross-sectional twist angles for generating the overall deformed shapes of the nonuniform beam. The further-developed displacement theory can also be applied to the deformed shape predictions of nonuniform two-point supported beams, nonuniform panels, nonuniform aircraft wings and fuselages, and so forth. The high degree of accuracy of the further-developed displacement theory for nonuniform beams is validated by finite-element analysis of various nonuniform beam structures. Such structures include tapered tubular beams, depth-tapered unswept and swept wing boxes, width-tapered wing boxes, and double-tapered wing boxes, all under combined bending and torsional loads. The Ko displacement theory, combined with the fiber-optic strain-sensing system, provide a powerful tool for in-flight deformed shape monitoring of unmanned aerospace vehicles by ground-based pilots to maintain safe flights.

  17. Nova laser alignment control system

    International Nuclear Information System (INIS)

    Van Arsdall, P.J.; Holloway, F.W.; McGuigan, D.L.; Shelton, R.T.

    1984-01-01

    Alignment of the Nova laser requires control of hundreds of optical components in the ten beam paths. Extensive application of computer technology makes daily alignment practical. The control system is designed in a manner which provides both centralized and local manual operator controls integrated with automatic closed loop alignment. Menudriven operator consoles using high resolution color graphics displays overlaid with transport touch panels allow laser personnel to interact efficiently with the computer system. Automatic alignment is accomplished by using image analysis techniques to determine beam references points from video images acquired along the laser chain. A major goal of the design is to contribute substantially to rapid experimental turnaround and consistent alignment results. This paper describes the computer-based control structure and the software methods developed for aligning this large laser system

  18. GraphAlignment: Bayesian pairwise alignment of biological networks

    Directory of Open Access Journals (Sweden)

    Kolář Michal

    2012-11-01

    Full Text Available Abstract Background With increased experimental availability and accuracy of bio-molecular networks, tools for their comparative and evolutionary analysis are needed. A key component for such studies is the alignment of networks. Results We introduce the Bioconductor package GraphAlignment for pairwise alignment of bio-molecular networks. The alignment incorporates information both from network vertices and network edges and is based on an explicit evolutionary model, allowing inference of all scoring parameters directly from empirical data. We compare the performance of our algorithm to an alternative algorithm, Græmlin 2.0. On simulated data, GraphAlignment outperforms Græmlin 2.0 in several benchmarks except for computational complexity. When there is little or no noise in the data, GraphAlignment is slower than Græmlin 2.0. It is faster than Græmlin 2.0 when processing noisy data containing spurious vertex associations. Its typical case complexity grows approximately as O(N2.6. On empirical bacterial protein-protein interaction networks (PIN and gene co-expression networks, GraphAlignment outperforms Græmlin 2.0 with respect to coverage and specificity, albeit by a small margin. On large eukaryotic PIN, Græmlin 2.0 outperforms GraphAlignment. Conclusions The GraphAlignment algorithm is robust to spurious vertex associations, correctly resolves paralogs, and shows very good performance in identification of homologous vertices defined by high vertex and/or interaction similarity. The simplicity and generality of GraphAlignment edge scoring makes the algorithm an appropriate choice for global alignment of networks.

  19. Non-uniform sampling and wide range angular spectrum method

    International Nuclear Information System (INIS)

    Kim, Yong-Hae; Byun, Chun-Won; Oh, Himchan; Lee, JaeWon; Pi, Jae-Eun; Heon Kim, Gi; Lee, Myung-Lae; Ryu, Hojun; Chu, Hye-Yong; Hwang, Chi-Sun

    2014-01-01

    A novel method is proposed for simulating free space field propagation from a source plane to a destination plane that is applicable for both small and large propagation distances. The angular spectrum method (ASM) was widely used for simulating near field propagation, but it caused a numerical error when the propagation distance was large because of aliasing due to under sampling. Band limited ASM satisfied the Nyquist condition on sampling by limiting a bandwidth of a propagation field to avoid an aliasing error so that it could extend the applicable propagation distance of the ASM. However, the band limited ASM also made an error due to the decrease of an effective sampling number in a Fourier space when the propagation distance was large. In the proposed wide range ASM, we use a non-uniform sampling in a Fourier space to keep a constant effective sampling number even though the propagation distance is large. As a result, the wide range ASM can produce simulation results with high accuracy for both far and near field propagation. For non-paraxial wave propagation, we applied the wide range ASM to a shifted destination plane as well. (paper)

  20. Terrestrial carbon cycle affected by non-uniform climate warming

    International Nuclear Information System (INIS)

    Jianyang Xia; Yiqi Luo; Jiquan Chen; Shilong Piao; Ciais, Philippe; Shiqiang Wan

    2014-01-01

    Feedbacks between the terrestrial carbon cycle and climate change could affect many ecosystem functions and services, such as food production, carbon sequestration and climate regulation. The rate of climate warming varies on diurnal and seasonal timescales. A synthesis of global air temperature data reveals a greater rate of warming in winter than in summer in northern mid and high latitudes, and the inverse pattern in some tropical regions. The data also reveal a decline in the diurnal temperature range over 51% of the global land area and an increase over only 13%, because night-time temperatures in most locations have risen faster than daytime temperatures. Analyses of satellite data, model simulations and in situ observations suggest that the impact of seasonal warming varies between regions. For example, spring warming has largely stimulated ecosystem productivity at latitudes between 30 degrees and 90 degrees N, but suppressed productivity in other regions. Contrasting impacts of day- and night-time warming on plant carbon gain and loss are apparent in many regions. We argue that ascertaining the effects of non-uniform climate warming on terrestrial ecosystems is a key challenge in carbon cycle research. (authors)

  1. Coronal heating by Alfven waves dissipation in compressible nonuniform media

    International Nuclear Information System (INIS)

    Malara, Francesco; Primavera, Leonardo; Veltri, Pierluigi

    1996-01-01

    The possibility to produce small scales and then to efficiently dissipate energy has been studied by Malara et al. [1992b] in the case of MHD disturbances propagating in an weakly dissipative incompressible and inhomogeneous medium, for a strictly 2D geometry. We extend this work to include both compressibility and the third component for vector quantities. Numerical simulations show that, when an Alfven wave propagates in a compressible nonuniform medium, the two dynamical effects responsible for the small scales formation in the incompressible case are still at work: energy pinching and phase-mixing. These effects give rise to the formation of compressible perturbations (fast and slow waves or a static entropy wave). Some of these compressive fluctuations are subject to the steepening of the wave front and become shock waves, which are extremely efficient in dissipating their energy, their dissipation being independent of the Reynolds number. Rough estimates of the typical times the various dynamical processes take to produce small scales show that these times are consistent with those required to dissipate inside the solar corona the energy of Alfven waves of photospheric origin

  2. Evaluation of nonuniform field exposures with coupling factors

    International Nuclear Information System (INIS)

    Sunohara, Tetsu; Hirata, Akimasa; Laakso, Ilkka; De Santis, Valerio; Onishi, Teruo

    2015-01-01

    In this study, the safety compliance for nonuniform field exposures is discussed using coupling factor concepts. The coupling factor, which is defined in the International Electrotechnical Commission 62311 standard, is extended to consider the effects of harmonics and also to apply to the specific absorption rate (for frequencies up to 30 MHz). The proposed compliance procedure is applied to and demonstrated for a prototype wireless power transfer (WPT) system with induction coupling operating at the fundamental frequency in 140 kHz band. First, measurements confirm that the perturbation of the external magnetic field strength and S 11 parameter of a one-loop antenna by a human-equivalent phantom are sufficiently small, suggesting the applicability of the magneto-quasi-static approximation to frequencies up to 30 MHz. Then, the frequency characteristics of the coupling factor are derived for the WPT system. For the prototype system that is not optimized for commercial usage, the maximum allowable transmitting power is relaxed by a factor of 23 with the proposed procedure. The contribution of the harmonics decreased the allowable transmitting power by 39%, indicating their importance for safety compliance. (paper)

  3. Divergent and nonuniform gene expression patterns in mouse brain

    Science.gov (United States)

    Morris, John A.; Royall, Joshua J.; Bertagnolli, Darren; Boe, Andrew F.; Burnell, Josh J.; Byrnes, Emi J.; Copeland, Cathy; Desta, Tsega; Fischer, Shanna R.; Goldy, Jeff; Glattfelder, Katie J.; Kidney, Jolene M.; Lemon, Tracy; Orta, Geralyn J.; Parry, Sheana E.; Pathak, Sayan D.; Pearson, Owen C.; Reding, Melissa; Shapouri, Sheila; Smith, Kimberly A.; Soden, Chad; Solan, Beth M.; Weller, John; Takahashi, Joseph S.; Overly, Caroline C.; Lein, Ed S.; Hawrylycz, Michael J.; Hohmann, John G.; Jones, Allan R.

    2010-01-01

    Considerable progress has been made in understanding variations in gene sequence and expression level associated with phenotype, yet how genetic diversity translates into complex phenotypic differences remains poorly understood. Here, we examine the relationship between genetic background and spatial patterns of gene expression across seven strains of mice, providing the most extensive cellular-resolution comparative analysis of gene expression in the mammalian brain to date. Using comprehensive brainwide anatomic coverage (more than 200 brain regions), we applied in situ hybridization to analyze the spatial expression patterns of 49 genes encoding well-known pharmaceutical drug targets. Remarkably, over 50% of the genes examined showed interstrain expression variation. In addition, the variability was nonuniformly distributed across strain and neuroanatomic region, suggesting certain organizing principles. First, the degree of expression variance among strains mirrors genealogic relationships. Second, expression pattern differences were concentrated in higher-order brain regions such as the cortex and hippocampus. Divergence in gene expression patterns across the brain could contribute significantly to variations in behavior and responses to neuroactive drugs in laboratory mouse strains and may help to explain individual differences in human responsiveness to neuroactive drugs. PMID:20956311

  4. Resource reflecting functor and its application to non-uniformity

    Science.gov (United States)

    Srinivasan, Priyaa Varshinee; Sanders, Barry C.; Cockett, Robin

    In this work, we formulate an abstract approach to translate one resource theory to another. We adopt the notion of resource theories as partitioned symmetric monoidal categories and extend this notion by considering resource-reflecting functors between resource theories. A functor F is a structure preserving map and F is said to be resource-reflecting if F (g) being a free transformation implies that the transformation g is also free. Thus, a resource-reflecting functor demonstrates that the existence of a free transformation between two resources in the domain resource theory can be inferred from the existence of a free transformation in the codomain theory. As an example, we construct one such functor from the resource theory of non-uniformity to a resource theory of majorization. Thus, our work lays a foundation for expressing similarities between resource theories and for applying results achieved in one resource theory to another. An abstract approach to the translation between theories enables common patterns to be identified between resource theories thereby reducing the effort of solving the same problem for different theories. BCS appreciates financial support from Alberta Innovates, NSERC, China's 1000 Talent Plan and the IQIM, which is an NSF Physics Frontiers Centre (NSF Grant PHY-1125565) with support of the Gordon and Betty Moore Foundation (GBMF-2644).

  5. The Influence of nonuniform activity distribution on cellular dosimetry

    International Nuclear Information System (INIS)

    Naling, Song; Yuan, Tian; Liangan, Zhang; Guangfu, Dai

    2008-01-01

    S value is an important parameter in determination of absorbed dose in nuclear medicine and radiobiology. The distribution of radioactivity shows significant influence on the S value especially in microdosimetry. In present work, a semi Monte Carlo Model is developed to calculate the microdosimetric cellular S value for different micro-distributions of radioactivity, i.e. uniform, linear increase, linear decrease, exponential increase, exponential decrease and centroid distribution. Emission of alpha particles is simulated by Monte Carlo model and the energy imparted to the target volume is calculated by the analytical Continuous Slowing Down Approximation (CSDA) model and the spline interpolation of range-energy relationship. We calculate tables of S values for 213 Po and 210 Po with various dimensions and most important with various possible micro-distributions of radioactivity, such as linear increase, linear decrease, exponential increase and exponential decrease. Then we compare the S values from cell to cell of uniform distribution with the Hamacher's results to test the feasibility of our model. S values of some nonuniform micro-distributions are compared to the corresponding data of the uniform distribution. The possible sources of these differences are theoretical analyzed. (author)

  6. Micromagnetics of thermally activated switching in nonuniformly magnetized nanodots

    International Nuclear Information System (INIS)

    Torres, L.; Lopez-Diaz, L.; Moro, E.; Francisco, C. de; Alejos, O.

    2001-01-01

    Patterned magnetic elements are being proposed as media for the future ultrahigh density storage systems. The equilibrium states of different patterned magnetic dots at zero temperature have been studied in numerous micromagnetic works while in the last year some studies have begun to include the effect of temperature in the computations. In this research a stochastic dynamic micromagnetic study is carried out for rectangular magnetic dots with size 10 by 3.1 times the exchange length, patterned in a film with a thickness of 5 times the exchange length. Two kinds of nonuniform magnetized nanodots are studied in detail: those in which the state prior to the switching follows the shape of a 'C' and those following an 'S'. In both cases a field near to the zero-temperature switching field is applied and then the thermally activated switching is observed. The dependence of the switching time on temperature is analyzed. It is observed how for the 'C' configuration an Arrhenius-like behavior is obtained in a large temperature window while this is not the case for the 'S' configuration. The micromagnetic structure of the switching thermally activated modes leading to these behaviors is also studied

  7. Evaluation of nonuniform field exposures with coupling factors.

    Science.gov (United States)

    Sunohara, Tetsu; Hirata, Akimasa; Laakso, Ilkka; De Santis, Valerio; Onishi, Teruo

    2015-10-21

    In this study, the safety compliance for nonuniform field exposures is discussed using coupling factor concepts. The coupling factor, which is defined in the International Electrotechnical Commission 62311 standard, is extended to consider the effects of harmonics and also to apply to the specific absorption rate (for frequencies up to 30 MHz). The proposed compliance procedure is applied to and demonstrated for a prototype wireless power transfer (WPT) system with induction coupling operating at the fundamental frequency in 140 kHz band. First, measurements confirm that the perturbation of the external magnetic field strength and S11 parameter of a one-loop antenna by a human-equivalent phantom are sufficiently small, suggesting the applicability of the magneto-quasi-static approximation to frequencies up to 30 MHz. Then, the frequency characteristics of the coupling factor are derived for the WPT system. For the prototype system that is not optimized for commercial usage, the maximum allowable transmitting power is relaxed by a factor of 23 with the proposed procedure. The contribution of the harmonics decreased the allowable transmitting power by 39%, indicating their importance for safety compliance.

  8. Mechanisms of bacterial DNA replication restart

    Science.gov (United States)

    Windgassen, Tricia A; Wessel, Sarah R; Bhattacharyya, Basudeb

    2018-01-01

    Abstract Multi-protein DNA replication complexes called replisomes perform the essential process of copying cellular genetic information prior to cell division. Under ideal conditions, replisomes dissociate only after the entire genome has been duplicated. However, DNA replication rarely occurs without interruptions that can dislodge replisomes from DNA. Such events produce incompletely replicated chromosomes that, if left unrepaired, prevent the segregation of full genomes to daughter cells. To mitigate this threat, cells have evolved ‘DNA replication restart’ pathways that have been best defined in bacteria. Replication restart requires recognition and remodeling of abandoned replication forks by DNA replication restart proteins followed by reloading of the replicative DNA helicase, which subsequently directs assembly of the remaining replisome subunits. This review summarizes our current understanding of the mechanisms underlying replication restart and the proteins that drive the process in Escherichia coli (PriA, PriB, PriC and DnaT). PMID:29202195

  9. Alternative methods for evaluation of non-uniformity in nuclear medicine images

    International Nuclear Information System (INIS)

    Rasaneh, S.; Rajabi, H.; Hajizadeh, E.

    2005-01-01

    Non-uniformity test is the most essential in daily quality control procedures of nuclear medicine equipment's. However, the calculation of non-uniformity is hindered due to high level of noise in nuclear medicine data. Non-uniformity may be considered as a type of systematic error while noise is certainly a random error. The present methods of uniformity evaluation are not able to distinguish between systematic and random error and therefore produce incorrect results when noise is significant. In the present study, two hypothetical methods have been tested for evaluation of non-uniformity in nuclear medicine images. Materials and Methods: Using the Monte Carlo method, uniform and non-uniform flood images of different matrix sizes and different counts were generated. The uniformity of the images was calculated using the conventional method and proposed methods. The results were compared with the known non-uniformity data of simulated images. Results: It was observed that the value of integral uniformity never went below the recommended values except in small matrix size of high counts (more than 80 millions counts). The differential uniformity was quite insensitive to the degree of non-uniformity in large matrix size. Matrix size of 64*64 was only found to be suitable for the calculation of differential uniformity. It was observed that in uniform images, a small amount of non-uniformity changes the p-value of Kolmogorov-Smirnov test and noise amplitude of fast fourier transformation test significantly while the conventional methods failed to detect the nonuniformity. Conclusion: The conventional methods do not distinguish noise, which is always present in the data and occasional non-uniformity at low count density. In a uniform intact flood image, the difference between maximum and minimum pixel count (the value of integral uniformity) is much more than the recommended values for non-uniformity. After filtration of image, this difference decreases, but remains high

  10. Effects of non-uniform core flow on peak cladding temperature: MOXY/SCORE sensitivity calculations

    Energy Technology Data Exchange (ETDEWEB)

    Chang, S.C.

    1979-08-15

    The MOXY/SCORE computer program is used to evaluate the potential effect on peak cladding temperature of selective cooling that may result from a nonuniform mass flux at the core boundaries during the blowdown phase of the LOFT L2-4 test. The results of this study indicate that the effect of the flow nonuniformity at the core boundaries will be neutralized by a strong radial flow redistribution in the neighborhood of core boundaries. The implication is that the flow nonuniformity at the core boundaries has no significant effect on the thermal-hydraulic behavior and cladding temperature at the hot plane.

  11. Effects of non-uniform core flow on peak cladding temperature: MOXY/SCORE sensitivity calculations

    International Nuclear Information System (INIS)

    Chang, S.C.

    1979-01-01

    The MOXY/SCORE computer program is used to evaluate the potential effect on peak cladding temperature of selective cooling that may result from a nonuniform mass flux at the core boundaries during the blowdown phase of the LOFT L2-4 test. The results of this study indicate that the effect of the flow nonuniformity at the core boundaries will be neutralized by a strong radial flow redistribution in the neighborhood of core boundaries. The implication is that the flow nonuniformity at the core boundaries has no significant effect on the thermal-hydraulic behavior and cladding temperature at the hot plane

  12. Mask alignment system for semiconductor processing

    Science.gov (United States)

    Webb, Aaron P.; Carlson, Charles T.; Weaver, William T.; Grant, Christopher N.

    2017-02-14

    A mask alignment system for providing precise and repeatable alignment between ion implantation masks and workpieces. The system includes a mask frame having a plurality of ion implantation masks loosely connected thereto. The mask frame is provided with a plurality of frame alignment cavities, and each mask is provided with a plurality of mask alignment cavities. The system further includes a platen for holding workpieces. The platen may be provided with a plurality of mask alignment pins and frame alignment pins configured to engage the mask alignment cavities and frame alignment cavities, respectively. The mask frame can be lowered onto the platen, with the frame alignment cavities moving into registration with the frame alignment pins to provide rough alignment between the masks and workpieces. The mask alignment cavities are then moved into registration with the mask alignment pins, thereby shifting each individual mask into precise alignment with a respective workpiece.

  13. The yeast replicative aging model.

    Science.gov (United States)

    He, Chong; Zhou, Chuankai; Kennedy, Brian K

    2018-03-08

    It has been nearly three decades since the budding yeast Saccharomyces cerevisiae became a significant model organism for aging research and it has emerged as both simple and powerful. The replicative aging assay, which interrogates the number of times a "mother" cell can divide and produce "daughters", has been a stalwart in these studies, and genetic approaches have led to the identification of hundreds of genes impacting lifespan. More recently, cell biological and biochemical approaches have been developed to determine how cellular processes become altered with age. Together, the tools are in place to develop a holistic view of aging in this single-celled organism. Here, we summarize the current state of understanding of yeast replicative aging with a focus on the recent studies that shed new light on how aging pathways interact to modulate lifespan in yeast. Copyright © 2018. Published by Elsevier B.V.

  14. Replicator dynamics in value chains

    DEFF Research Database (Denmark)

    Cantner, Uwe; Savin, Ivan; Vannuccini, Simone

    2016-01-01

    The pure model of replicator dynamics though providing important insights in the evolution of markets has not found much of empirical support. This paper extends the model to the case of firms vertically integrated in value chains. We show that i) by taking value chains into account, the replicator...... dynamics may revert its effect. In these regressive developments of market selection, firms with low fitness expand because of being integrated with highly fit partners, and the other way around; ii) allowing partner's switching within a value chain illustrates that periods of instability in the early...... stage of industry life-cycle may be the result of an 'optimization' of partners within a value chain providing a novel and simple explanation to the evidence discussed by Mazzucato (1998); iii) there are distinct differences in the contribution to market selection between the layers of a value chain...

  15. Replication confers β cell immaturity.

    Science.gov (United States)

    Puri, Sapna; Roy, Nilotpal; Russ, Holger A; Leonhardt, Laura; French, Esra K; Roy, Ritu; Bengtsson, Henrik; Scott, Donald K; Stewart, Andrew F; Hebrok, Matthias

    2018-02-02

    Pancreatic β cells are highly specialized to regulate systemic glucose levels by secreting insulin. In adults, increase in β-cell mass is limited due to brakes on cell replication. In contrast, proliferation is robust in neonatal β cells that are functionally immature as defined by a lower set point for glucose-stimulated insulin secretion. Here we show that β-cell proliferation and immaturity are linked by tuning expression of physiologically relevant, non-oncogenic levels of c-Myc. Adult β cells induced to replicate adopt gene expression and metabolic profiles resembling those of immature neonatal β that proliferate readily. We directly demonstrate that priming insulin-producing cells to enter the cell cycle promotes a functionally immature phenotype. We suggest that there exists a balance between mature functionality and the ability to expand, as the phenotypic state of the β cell reverts to a less functional one in response to proliferative cues.

  16. Chromatin replication and histone dynamics

    DEFF Research Database (Denmark)

    Alabert, Constance; Jasencakova, Zuzana; Groth, Anja

    2017-01-01

    Inheritance of the DNA sequence and its proper organization into chromatin is fundamental for genome stability and function. Therefore, how specific chromatin structures are restored on newly synthesized DNA and transmitted through cell division remains a central question to understand cell fate...... choices and self-renewal. Propagation of genetic information and chromatin-based information in cycling cells entails genome-wide disruption and restoration of chromatin, coupled with faithful replication of DNA. In this chapter, we describe how cells duplicate the genome while maintaining its proper...... organization into chromatin. We reveal how specialized replication-coupled mechanisms rapidly assemble newly synthesized DNA into nucleosomes, while the complete restoration of chromatin organization including histone marks is a continuous process taking place throughout the cell cycle. Because failure...

  17. MaxAlign: maximizing usable data in an alignment

    DEFF Research Database (Denmark)

    Oliveira, Rodrigo Gouveia; Sackett, Peter Wad; Pedersen, Anders Gorm

    2007-01-01

    Align. In this paper we also introduce a new simple measure of tree similarity, Normalized Symmetric Similarity (NSS) that we consider useful for comparing tree topologies. CONCLUSION: We demonstrate how MaxAlign is helpful in detecting misaligned or defective sequences without requiring manual inspection. We also...

  18. Live Replication of Paravirtual Machines

    OpenAIRE

    Stodden, Daniel

    2009-01-01

    Virtual machines offer a fair degree of system state encapsulation, which promotes practical advances in fault tolerance, system debugging, profiling and security applications. This work investigates deterministic replay and semi-active replication for system paravirtualization, a software discipline trading guest kernel binar compatibility for reduced dependency on costly trap-and-emulate techniques. A primary contribution is evidence that trace capturing under a piecewise deterministic exec...

  19. Gas dynamic improvement of the axial compressor design for reduction of the flow non-uniformity level

    Science.gov (United States)

    Matveev, V. N.; Baturin, O. V.; Kolmakova, D. A.; Popov, G. M.

    2017-01-01

    Circumferential nonuniformity of gas flow is one of the main problems in the gas turbine engine. Usually, the flow circumferential nonuniformity appears near the annular frame located in the flow passage of the engine. The presence of circumferential nonuniformity leads to the increased dynamic stresses in the blade rows and the blade damage. The goal of this research was to find the ways of the flow non-uniformity reduction, which would not require a fundamental changing of the engine design. A new method for reducing the circumferential nonuniformity of the gas flow was proposed that allows the prediction of the pressure peak values of the rotor blades without computationally expensive CFD calculations.

  20. In vitro replication of poliovirus

    International Nuclear Information System (INIS)

    Lubinski, J.M.

    1986-01-01

    Poliovirus is a member of the Picornaviridae whose genome is a single stranded RNA molecule of positive polarity surrounded by a proteinaceous capsid. Replication of poliovirus occurs via negative strand intermediates in infected cells using a virally encoded RNA-dependent RNA polymerase and host cell proteins. The authors have exploited the fact that complete cDNA copies of the viral genome when transfected onto susceptible cells generate virus. Utilizing the bacteriophage SP6 DNA dependent RNA polymerase system to synthesize negative strands in vitro and using these in an in vitro reaction the authors have generated full length infectious plus strands. Mutagenesis of the 5' and 3' ends of the negative and positive strands demonstrated that replication could occur either de novo or be extensions of the templates from their 3' ends or from nicks occurring during replication. The appearance of dimeric RNA molecules generated in these reactions was not dependent upon the same protein required for de novo initiation. Full length dimeric RNA molecules using a 5' 32 P end-labelled oligo uridylic acid primer and positive strand template were demonstrated in vitro containing only the 35,000 Mr host protein and the viral RNA-dependent RNA polymerase. A model for generating positive strands without protein priming by cleavage of dimeric RNA molecules was proposed

  1. Mechanism and scaling for convection of isolated structures in nonuniformly magnetized plasmas

    DEFF Research Database (Denmark)

    Garcia, O.E.; Bian, N.H.; Naulin, V.

    2005-01-01

    Large-scale radial advection of isolated structures in nonuniformly magnetized plasmas is investigated. The underlying mechanism considered is due to the nonlinear evolution of interchange motions, without any presumption of plasma sheaths. Theoretical arguments supported by numerical simulations...

  2. Reduction of gas flow nonuniformity in gas turbine engines by means of gas-dynamic methods

    Science.gov (United States)

    Matveev, V.; Baturin, O.; Kolmakova, D.; Popov, G.

    2017-08-01

    Gas flow nonuniformity is one of the main sources of rotor blade vibrations in the gas turbine engines. Usually, the flow circumferential nonuniformity occurs near the annular frames, located in the flow channel of the engine. This leads to the increased dynamic stresses in blades and as a consequence to the blade damage. The goal of the research was to find an acceptable method of reducing the level of gas flow nonuniformity as the source of dynamic stresses in the rotor blades. Two different methods were investigated during this research. Thus, this study gives the ideas about methods of improving the flow structure in gas turbine engine. On the basis of existing conditions (under development or existing engine) it allows the selection of the most suitable method for reducing gas flow nonuniformity.

  3. Analysis of Quantum Effects in Non-Uniformly Doped MOS Structures

    National Research Council Canada - National Science Library

    Fiegna, Claudio

    1997-01-01

    This paper presents results from the self-consistent solution of Schrodinger and Poisson equations obtained in one-dimensional non-uniformly doped MOS structures suitable for the fabrication of very short transistors...

  4. The magnetostriction in a superconductor-magnet system under non-uniform magnetic field

    Energy Technology Data Exchange (ETDEWEB)

    Li, Xueyi; Jiang, Lang; Wu, Hao [Key Laboratory of Mechanics on Disaster and Environment in Western China attached to the Ministry of Education of China, Lanzhou University, Lanzhou, Gansu 730000 (China); Gao, Zhiwen, E-mail: gaozhw@lzu.edu.cn [Department of Mechanics and Engineering Science, College of Civil Engineering and Mechanics, Lanzhou University, Lanzhou, Gansu 730000 (China)

    2017-03-15

    Highlights: • We studied firstly magnetostriction in HTS under non-uniform magnetic field. • The superconductors may be homogeneous and nonhomogeneous. • The magnetostrictions response of the HTS is sensitive to the critical current density and amplitude of the applied magnetic field. • The magnetostriction of nonhomogeneous HTS is larger than that of homogeneous HTS. - Abstract: This paper describes a numerical model to examine the magnetostriction of bulk high-temperature superconductor (HTS) under non-uniform magnetic field in conjunction with finite element analysis. Through this model, the magnetostriction of homogeneous and nonhomogeneous HTS can be implemented under non-uniform magnetic field. Further, the effects of critical current density, applied field frequency and amplitude are also considered. The computational study can provide a fundamental mechanistic understanding the effects of non-uniform magnetic field on magnetostriction of HTS.

  5. Factorization method for difference equations of hypergeometric type on nonuniform lattices

    Energy Technology Data Exchange (ETDEWEB)

    Alvarez-Nodarse, R. [Departamento de Analisis Matematico, Universidad de Sevilla, Sevilla (Spain); Instituto Carlos I de Fisica Teorica y Computacional, Universidad de Granada, Granada (Spain); Costas-Santos, R.S. [Departamento de Analisis Matematico, Universidad de Sevilla, Sevilla (Spain)

    2001-07-13

    We study the factorization of the hypergeometric-type difference equation of Nikiforov and Uvarov on nonuniform lattices. An explicit form of the raising and lowering operators is derived and some relevant examples are given. (author)

  6. Weighted backprojection implemented with a non-uniform attenuation map for improved SPECT quantitation

    International Nuclear Information System (INIS)

    Manglos, S.H.; Jaszczak, R.J.; Floyd, C.E.

    1988-01-01

    A method is developed to improve quantitation in SPECT imaging by using an attenuation compensation method which includes the correct non-uniform attenuation spatial distribution (''map''). The method is based on the technique of weighted back projection, previously developed for uniform attenuation. The method is tested by imaging a non-uniform phantom, reconstructing with the known attenuation map, and quantitatively comparing the resultant image with the known activity distribution. Reconstructed image profiles are dramatically improved in comparison to reconstructions without compensation or with an assumed uniform attenuation map. Contrast measurements further quantify the improvement. Line spread function distortions seen previously in non-uniform geometries are essentially eliminated by the method. Therefore, the method appears to be appropriate for these geometries, if the non-uniform map can be determined. Some additional image distortions introduced by the compensation method are noted and will require further study

  7. A generalized global alignment algorithm.

    Science.gov (United States)

    Huang, Xiaoqiu; Chao, Kun-Mao

    2003-01-22

    Homologous sequences are sometimes similar over some regions but different over other regions. Homologous sequences have a much lower global similarity if the different regions are much longer than the similar regions. We present a generalized global alignment algorithm for comparing sequences with intermittent similarities, an ordered list of similar regions separated by different regions. A generalized global alignment model is defined to handle sequences with intermittent similarities. A dynamic programming algorithm is designed to compute an optimal general alignment in time proportional to the product of sequence lengths and in space proportional to the sum of sequence lengths. The algorithm is implemented as a computer program named GAP3 (Global Alignment Program Version 3). The generalized global alignment model is validated by experimental results produced with GAP3 on both DNA and protein sequences. The GAP3 program extends the ability of standard global alignment programs to recognize homologous sequences of lower similarity. The GAP3 program is freely available for academic use at http://bioinformatics.iastate.edu/aat/align/align.html.

  8. Vacuum Alignment with more Flavors

    DEFF Research Database (Denmark)

    Ryttov, Thomas

    2014-01-01

    We study the alignment of the vacuum in gauge theories with $N_f$ Dirac fermions transforming according to a complex representation of the gauge group. The alignment of the vacuum is produced by adding a small mass perturbation to the theory. We study in detail the $N_f=2,3$ and $4$ case. For $N_...

  9. Liquid jets injected into non-uniform crossflow

    Science.gov (United States)

    Tambe, Samir

    An experimental study has been conducted with liquid jets injected transversely into a crossflow to study the effect of non-uniformities in the crossflow velocity distribution to the jet behavior. Two different non-uniform crossflows were created during this work, a shear-laden crossflow and a swirling crossflow. The shear-laden crossflow was generated by merging two independent, co-directional, parallel airstreams creating a shear mixing layer at the interface between them. The crossflow exhibited a quasi-linear velocity gradient across the height of the test chamber. By varying the velocities of the two airstreams, the sense and the slope of the crossflow velocity gradient could be changed. Particle Image Velocimetry (PIV) studies were conducted to characterize the crossflow. The parameter, UR, is defined as the ratio of the velocities of the two streams and governs the velocity gradient. A positive velocity gradient was observed for UR > 1 and a negative velocity gradient for UR Phase Doppler Particle Anemometry (PDPA) studies were conducted to study the penetration and atomization of 0.5 mm diameter water jets injected into this crossflow. The crossflow velocity gradient was observed to have a significant effect on jet penetration as well as the post breakup spray. For high UR (> 1), jet penetration increased and the Sauter Mean Diameter (SMD) distribution became more uniform. For low UR (Doppler Velocimetry (LDV) was used to study the crossflow velocities. The axial (Ux) and the tangential (Utheta) components of the crossflow velocity were observed to decrease with increasing radial distance away from the centerbody. The flow angle of the crossflow was smaller than the vane exit angle, with the difference increasing with the vane exit angle. Water jets were injected from a 0.5 mm diameter orifice located on a cylindrical centerbody. Multi-plane PIV measurements were conducted to study the penetration and droplet velocity distribution of the jets. The jets were

  10. Clinical implications of alternative TCP models for nonuniform dose distributions

    International Nuclear Information System (INIS)

    Deasy, J. O.

    1995-01-01

    Several tumor control probability (TCP) models for nonuniform dose distributions were compared, including: (a) a logistic/inter-patient-heterogeneity model, (b) a probit/inter-patient-heterogeneity model, (c) a Poisson/radioresistant-strain/identical-patients model, (d) a Poisson/inter-patient-heterogeneity model and (e) a Poisson/intra-tumor- and inter-patient-heterogeneity model. The models were analyzed in terms of the probability of controlling a single tumor voxel (the voxel control probability, or VCP), as a function of voxel volume and dose. Alternatively, the VCP surface can be thought of as the effect of a small cold spot. The models based on the Poisson equation which include inter-patient heterogeneity ((d) and (e)) have VCP surfaces (VCP as a function of dose and volume) which have a threshold 'waterfall' shape: below the waterfall (in dose), VCP is nearly zero. The threshold dose decreases with decreasing voxel volume. However, models (a), (b), and (c) all show a high probability of controlling a voxel (VCP>50%) with very low dose (e.g., 1 Gy) if the voxel is small (smaller than about 10 -3 of the tumor volume). Model (c) does not have the waterfall shape at low volumes due to the assumption of patient uniformity and a neglect of the effect of the clonogens which are more radiosensitive (and more numerous). Models (a) and (b) deviate from the waterfall shape at low volumes due to numerical differences between the functions used and the Poisson function. Hence, the Possion models which include inter-patient heterogeneities ((d) and (e)) are more sensitive to the effects of small cold spots than the other models considered

  11. Variational theory of cyclotron emission from nonuniformly magnetized plasmas

    International Nuclear Information System (INIS)

    Shvets, V.F.; Swanson, D.G.

    1992-01-01

    Whereas direct calculations of emission from a source model in both homogeneous and weakly inhomogeneous media have been previously executed, there are no previous theories of the source distribution function from nonuniformly magnetized plasmas where mode conversion phenomena must be taken into account. Whenever the emitting layer is localized due to gradients of the external magnetic field, mode conversion leads to the Generalized Kirchhoff's Law (GKL) E 1 /A 1 = E 2 /A 2 = E 3 /A 3 , where A j represents the absorbed fraction on the j-th wave branch and E j is the corresponding emitted energy along j-th branch. Recently integral expressions for A j and E j in terms of arbitrary localized sink and source distributions have been obtained. The GKL relating absorption to emission along each branch of coexisting in the inhomogeneous mode conversion layer affects the shape of source distribution through a functional of the emissivity. Moreover, E j /A j ≡ I bb , where I bb is a black body radiated power. Accordingly, the distributed emission source function should be an extremal of the emissivity functional. The authors have developed the corresponding variational analysis with nontrivial GKL constraints. As a result they have discovered the correct representation of the ratio of source and sink distributions in the form of an expansion in linearly independent adjoint wave solutions of the absorption problem. Finally, unknown coefficients have been found numerically by further maximization taking account of both source boundedness and the GKL constraints. Calculations performed for a broad variety of plasma parameters will be presented

  12. Replication of micro and nano surface geometries

    DEFF Research Database (Denmark)

    Hansen, Hans Nørgaard; Hocken, R.J.; Tosello, Guido

    2011-01-01

    The paper describes the state-of-the-art in replication of surface texture and topography at micro and nano scale. The description includes replication of surfaces in polymers, metals and glass. Three different main technological areas enabled by surface replication processes are presented......: manufacture of net-shape micro/nano surfaces, tooling (i.e. master making), and surface quality control (metrology, inspection). Replication processes and methods as well as the metrology of surfaces to determine the degree of replication are presented and classified. Examples from various application areas...... are given including replication for surface texture measurements, surface roughness standards, manufacture of micro and nano structured functional surfaces, replicated surfaces for optical applications (e.g. optical gratings), and process chains based on combinations of repeated surface replication steps....

  13. Emittance growth caused by nonuniform charge distribution of bunched beam in linac

    International Nuclear Information System (INIS)

    Chen Yinbao; Zhang Zhenhai

    1993-09-01

    The nonlinear space charge effect of bunched beam in linac is one of the important reasons that induces the emittance growth because of the conversion of the field energy to kinetic energy. The authors have worked out the internal field energies associated with some nonuniform space change distributions of a bunched beam, such as Gaussian distribution, waterbag distribution and parabolic distribution. And the emittance growths caused by these nonuniformities are obtained

  14. Influence of Non-Uniform Magnetic Field on Quantum Teleportation in Heisenberg XY Model

    Institute of Scientific and Technical Information of China (English)

    SHAO Bin; YANG Tie-jian; ZHAO Yue-hong; ZOU Jian

    2007-01-01

    By considering the intrinsic decoherence, the validity of quantum teleportation of a two-qubit 1D Heisenberg XY chain in a non-uniform external magnetic field is studied. The fidelity as the measurement of a possible quantum teleportation is calculated and the effects of the non-uniform magnetic field and the intrinsic decoherence are discussed. It is found that anti-parallel magnetic field is more favorable for teleportation and the fidelity is suppressed by the intrinsic decoherence.

  15. The CMS Silicon Tracker Alignment

    CERN Document Server

    Castello, R

    2008-01-01

    The alignment of the Strip and Pixel Tracker of the Compact Muon Solenoid experiment, with its large number of independent silicon sensors and its excellent spatial resolution, is a complex and challenging task. Besides high precision mounting, survey measurements and the Laser Alignment System, track-based alignment is needed to reach the envisaged precision.\\\\ Three different algorithms for track-based alignment were successfully tested on a sample of cosmic-ray data collected at the Tracker Integration Facility, where 15\\% of the Tracker was tested. These results, together with those coming from the CMS global run, will provide the basis for the full-scale alignment of the Tracker, which will be carried out with the first \\emph{p-p} collisions.

  16. Adenovirus sequences required for replication in vivo.

    OpenAIRE

    Wang, K; Pearson, G D

    1985-01-01

    We have studied the in vivo replication properties of plasmids carrying deletion mutations within cloned adenovirus terminal sequences. Deletion mapping located the adenovirus DNA replication origin entirely within the first 67 bp of the adenovirus inverted terminal repeat. This region could be further subdivided into two functional domains: a minimal replication origin and an adjacent auxillary region which boosted the efficiency of replication by more than 100-fold. The minimal origin occup...

  17. Parametrised Constants and Replication for Spatial Mobility

    DEFF Research Database (Denmark)

    Hüttel, Hans; Haagensen, Bjørn

    2009-01-01

    Parametrised replication and replication are common ways of expressing infinite computation in process calculi. While parametrised constants can be encoded using replication in the π-calculus, this changes in the presence of spatial mobility as found in e.g. the distributed π- calculus...... of the distributed π-calculus with parametrised constants and replication are incomparable. On the other hand, we shall see that there exists a simple encoding of recursion in mobile ambients....

  18. Alignment-Annotator web server: rendering and annotating sequence alignments.

    Science.gov (United States)

    Gille, Christoph; Fähling, Michael; Weyand, Birgit; Wieland, Thomas; Gille, Andreas

    2014-07-01

    Alignment-Annotator is a novel web service designed to generate interactive views of annotated nucleotide and amino acid sequence alignments (i) de novo and (ii) embedded in other software. All computations are performed at server side. Interactivity is implemented in HTML5, a language native to web browsers. The alignment is initially displayed using default settings and can be modified with the graphical user interfaces. For example, individual sequences can be reordered or deleted using drag and drop, amino acid color code schemes can be applied and annotations can be added. Annotations can be made manually or imported (BioDAS servers, the UniProt, the Catalytic Site Atlas and the PDB). Some edits take immediate effect while others require server interaction and may take a few seconds to execute. The final alignment document can be downloaded as a zip-archive containing the HTML files. Because of the use of HTML the resulting interactive alignment can be viewed on any platform including Windows, Mac OS X, Linux, Android and iOS in any standard web browser. Importantly, no plugins nor Java are required and therefore Alignment-Anotator represents the first interactive browser-based alignment visualization. http://www.bioinformatics.org/strap/aa/ and http://strap.charite.de/aa/. © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research.

  19. The Effects of Nonuniform Illumination on the Electrical Performance of a Single Conventional Photovoltaic Cell

    Directory of Open Access Journals (Sweden)

    Damasen Ikwaba Paul

    2015-01-01

    Full Text Available Photovoltaic (PV concentrators are a promising approach for lowering PV electricity costs in the near future. However, most of the concentrators that are currently used for PV applications yield nonuniform flux profiles on the surface of a PV module which in turn reduces its electrical performance if the cells are serially connected. One way of overcoming this effect is the use of PV modules with isolated cells so that each cell generates current that is proportional to the energy flux absorbed. However, there are some cases where nonuniform illumination also exists in a single cell in an isolated cells PV module. This paper systematically studied the effect of nonuniform illumination on various cell performance parameters of a single monocrystalline standard PV cell at low and medium energy concentration ratios. Furthermore, the effect of orientation, size, and geometrical shapes of nonuniform illumination was also investigated. It was found that the effect of nonuniform illumination on various PV cell performance parameters of a single standard PV cell becomes noticeable at medium energy flux concentration whilst the location, size, and geometrical shape of nonuniform illumination have no effect on the performance parameters of the cell.

  20. Nonuniform grid implicit spatial finite difference method for acoustic wave modeling in tilted transversely isotropic media

    KAUST Repository

    Chu, Chunlei

    2012-01-01

    Discrete earth models are commonly represented by uniform structured grids. In order to ensure accurate numerical description of all wave components propagating through these uniform grids, the grid size must be determined by the slowest velocity of the entire model. Consequently, high velocity areas are always oversampled, which inevitably increases the computational cost. A practical solution to this problem is to use nonuniform grids. We propose a nonuniform grid implicit spatial finite difference method which utilizes nonuniform grids to obtain high efficiency and relies on implicit operators to achieve high accuracy. We present a simple way of deriving implicit finite difference operators of arbitrary stencil widths on general nonuniform grids for the first and second derivatives and, as a demonstration example, apply these operators to the pseudo-acoustic wave equation in tilted transversely isotropic (TTI) media. We propose an efficient gridding algorithm that can be used to convert uniformly sampled models onto vertically nonuniform grids. We use a 2D TTI salt model to demonstrate its effectiveness and show that the nonuniform grid implicit spatial finite difference method can produce highly accurate seismic modeling results with enhanced efficiency, compared to uniform grid explicit finite difference implementations. © 2011 Elsevier B.V.

  1. Experimental and theoretical studies of the effects of nonuniformities in equilibrium MHD generators

    International Nuclear Information System (INIS)

    Rosenbaum, M.; Shamma, S.E.; Louis, J.F.

    1980-01-01

    An experimental study of the effects of thermal and velocity nonuniformities is performed in an equilibrium plasma for a range of Hall parameters. An electrodeless MHD disk generator with radial flow is chosen as the ideal geometry for these experiments. By introducing equally spaced cold blades in the flow, it is possible to create well defined two-dimensional wake nonuniformities with strong variations of the plasma properties in the direction normal to the magnetic field and the flow. This type of nonuniformity is predicted to provide the strongest reduction of Hall coefficient and effective conductivity for high values of Hall parameter. This degradation is controlled by both the level of nonuniformities and the value of the ideal Hall parameter. The former is dependent upon the number of blades (root mean square deviation of the conductivity), and the latter is dependent upon the values of the magnetic field intensities. The results provide basic quantitative information about the effects of conductivity and velocity nonuniformities on the performance of equilibrium MHD generators over a wide range of Hall coefficients, between 2 and 7. Reduction formulae are established between the effective and ideal Hall parameters for different levels of nonuniformities intensities. Theoretical predictions are derived from a detailed two-dimensional electrodynamic analysis and a simplified engineering model based on a generalization of Rosa's layer model. These experiments validate the analytical studies and support the use of the theoretical layer models in describing the effect of boundary layers on the performance of linear generators

  2. 36 CFR 910.64 - Replication.

    Science.gov (United States)

    2010-07-01

    ... 36 Parks, Forests, and Public Property 3 2010-07-01 2010-07-01 false Replication. 910.64 Section 910.64 Parks, Forests, and Public Property PENNSYLVANIA AVENUE DEVELOPMENT CORPORATION GENERAL... DEVELOPMENT AREA Glossary of Terms § 910.64 Replication. Replication means the process of using modern methods...

  3. Exploiting replicative stress to treat cancer

    DEFF Research Database (Denmark)

    Dobbelstein, Matthias; Sørensen, Claus Storgaard

    2015-01-01

    DNA replication in cancer cells is accompanied by stalling and collapse of the replication fork and signalling in response to DNA damage and/or premature mitosis; these processes are collectively known as 'replicative stress'. Progress is being made to increase our understanding of the mechanisms...

  4. Variance Swap Replication: Discrete or Continuous?

    Directory of Open Access Journals (Sweden)

    Fabien Le Floc’h

    2018-02-01

    Full Text Available The popular replication formula to price variance swaps assumes continuity of traded option strikes. In practice, however, there is only a discrete set of option strikes traded on the market. We present here different discrete replication strategies and explain why the continuous replication price is more relevant.

  5. Tunnel Face Stability and the Effectiveness of Advance Drainage Measures in Water-Bearing Ground of Non-uniform Permeability

    Science.gov (United States)

    Zingg, Sara; Anagnostou, Georg

    2018-01-01

    Non-uniform permeability may result in complex hydraulic head fields with potentially very high hydraulic gradients close to the tunnel face, which may be adverse for stability depending on the ground strength. Pore pressure relief by drainage measures in advance of the tunnel excavation improves stability, but the effectiveness of drainage boreholes may be low in the case of alternating aquifers and aquitards. This paper analyses the effects of hydraulic heterogeneity and advance drainage quantitatively by means of limit equilibrium computations that take account of the seepage forces acting upon the ground in the vicinity the tunnel face. The piezometric field is determined numerically by means of steady-state, three-dimensional seepage flow analyses considering the heterogeneous structure of the ground and a typical advance drainage scheme consisting of six axial boreholes drilled from the tunnel face. A suite of stability analyses was carried out covering a wide range of heterogeneity scales. The computational results show the effect of the orientation, thickness, location, number and permeability ratio of aquifers and aquitards and provide valuable indications about potentially critical situations, the effectiveness of advance drainage and the adequate arrangement of drainage boreholes. The paper shows that hydraulic heterogeneity results in highly variable face behaviour, even if the shear strength of the ground is constant along the alignment, but ground behaviour is considerably less variable in the presence of advance drainage measures.

  6. A method to measure the mean thickness and non-uniformity of non-uniform thin film by alpha-ray thickness gauge

    International Nuclear Information System (INIS)

    Miyahara, Hiroshi; Yoshida, Makoto; Watanabe, Tamaki

    1977-01-01

    The α-ray thickness gauge is used to measure non-destructively the thicknesses of thin films, and up to the present day, a thin film with uniform thickness is only taken up as the object of α-ray thickness gauge. When the thickness is determined from the displacement between the absorption curves in the presence and absence of thin film, the absorption curve must be displaced in parallel. When many uniform particles were dispersed as sample, the shape of the absorption curve was calculated as the sum of many absorption curves corresponding to the thin films with different thicknesses. By the comparison of the calculated and measured absorption curves, the number of particles, or the mean superficial density can be determined. This means the extension of thickness measurement from uniform to non-uniform films. Furthermore, these particle models being applied to non-uniform thin film, the possibility of measuring the mean thickness and non-uniformity was discussed. As the result, if the maximum difference of the thickness was more than 0.2 mg/cm 2 , the nonuniformity was considered to distinguish by the usual equipment. In this paper, an α-ray thickness gauge using the absorption curve method was treated, but one can apply this easily to an α-ray thickness gauge using α-ray energy spectra before and after the penetration of thin film. (auth.)

  7. Galaxy Alignments: Theory, Modelling & Simulations

    Science.gov (United States)

    Kiessling, Alina; Cacciato, Marcello; Joachimi, Benjamin; Kirk, Donnacha; Kitching, Thomas D.; Leonard, Adrienne; Mandelbaum, Rachel; Schäfer, Björn Malte; Sifón, Cristóbal; Brown, Michael L.; Rassat, Anais

    2015-11-01

    The shapes of galaxies are not randomly oriented on the sky. During the galaxy formation and evolution process, environment has a strong influence, as tidal gravitational fields in the large-scale structure tend to align nearby galaxies. Additionally, events such as galaxy mergers affect the relative alignments of both the shapes and angular momenta of galaxies throughout their history. These "intrinsic galaxy alignments" are known to exist, but are still poorly understood. This review will offer a pedagogical introduction to the current theories that describe intrinsic galaxy alignments, including the apparent difference in intrinsic alignment between early- and late-type galaxies and the latest efforts to model them analytically. It will then describe the ongoing efforts to simulate intrinsic alignments using both N-body and hydrodynamic simulations. Due to the relative youth of this field, there is still much to be done to understand intrinsic galaxy alignments and this review summarises the current state of the field, providing a solid basis for future work.

  8. Non-Uniformity Correction Using Nonlinear Characteristic Performance Curves for Calibration

    Science.gov (United States)

    Lovejoy, McKenna Roberts

    Infrared imaging is an expansive field with many applications. Advances in infrared technology have lead to a greater demand from both commercial and military sectors. However, a known problem with infrared imaging is its non-uniformity. This non-uniformity stems from the fact that each pixel in an infrared focal plane array has its own photoresponse. Many factors such as exposure time, temperature, and amplifier choice affect how the pixels respond to incoming illumination and thus impact image uniformity. To improve performance non-uniformity correction (NUC) techniques are applied. Standard calibration based techniques commonly use a linear model to approximate the nonlinear response. This often leaves unacceptable levels of residual non-uniformity. Calibration techniques often have to be repeated during use to continually correct the image. In this dissertation alternates to linear NUC algorithms are investigated. The goal of this dissertation is to determine and compare nonlinear non-uniformity correction algorithms. Ideally the results will provide better NUC performance resulting in less residual non-uniformity as well as reduce the need for recalibration. This dissertation will consider new approaches to nonlinear NUC such as higher order polynomials and exponentials. More specifically, a new gain equalization algorithm has been developed. The various nonlinear non-uniformity correction algorithms will be compared with common linear non-uniformity correction algorithms. Performance will be compared based on RMS errors, residual non-uniformity, and the impact quantization has on correction. Performance will be improved by identifying and replacing bad pixels prior to correction. Two bad pixel identification and replacement techniques will be investigated and compared. Performance will be presented in the form of simulation results as well as before and after images taken with short wave infrared cameras. The initial results show, using a third order

  9. Replication dynamics of the yeast genome.

    Science.gov (United States)

    Raghuraman, M K; Winzeler, E A; Collingwood, D; Hunt, S; Wodicka, L; Conway, A; Lockhart, D J; Davis, R W; Brewer, B J; Fangman, W L

    2001-10-05

    Oligonucleotide microarrays were used to map the detailed topography of chromosome replication in the budding yeast Saccharomyces cerevisiae. The times of replication of thousands of sites across the genome were determined by hybridizing replicated and unreplicated DNAs, isolated at different times in S phase, to the microarrays. Origin activations take place continuously throughout S phase but with most firings near mid-S phase. Rates of replication fork movement vary greatly from region to region in the genome. The two ends of each of the 16 chromosomes are highly correlated in their times of replication. This microarray approach is readily applicable to other organisms, including humans.

  10. Chromosomal DNA replication of Vicia faba cells

    International Nuclear Information System (INIS)

    Ikushima, Takaji

    1976-01-01

    The chromosomal DNA replication of higher plant cells has been investigated by DNA fiber autoradiography. The nuclear DNA fibers of Vicia root meristematic cells are organized into many tandem arrays of replication units or replicons which exist as clusters with respect to replication. DNA is replicated bidirectionally from the initiation points at the average rate of 0.15 μm/min at 20 0 C, and the average interinitiation interval is about 16 μm. The manner of chromosomal DNA replication in this higher plant is similar to that found in other eukaryotic cells at a subchromosomal level. (auth.)

  11. Aligning for Innovation - Alignment Strategy to Drive Innovation

    Science.gov (United States)

    Johnson, Hurel; Teltschik, David; Bussey, Horace, Jr.; Moy, James

    2010-01-01

    With the sudden need for innovation that will help the country achieve its long-term space exploration objectives, the question of whether NASA is aligned effectively to drive the innovation that it so desperately needs to take space exploration to the next level should be entertained. Authors such as Robert Kaplan and David North have noted that companies that use a formal system for implementing strategy consistently outperform their peers. They have outlined a six-stage management systems model for implementing strategy, which includes the aligning of the organization towards its objectives. This involves the alignment of the organization from the top down. This presentation will explore the impacts of existing U.S. industrial policy on technological innovation; assess the current NASA organizational alignment and its impacts on driving technological innovation; and finally suggest an alternative approach that may drive the innovation needed to take the world to the next level of space exploration, with NASA truly leading the way.

  12. Inferential misconceptions and replication crisis

    Directory of Open Access Journals (Sweden)

    Norbert Hirschauer

    2016-12-01

    Full Text Available Misinterpretations of the p value and the introduction of bias through arbitrary analytical choices have been discussed in the literature for decades. Nonetheless, they seem to have persisted in empirical research, and criticisms of p value misuses have increased in the recent past due to the non-replicability of many studies. Unfortunately, the critical concerns that have been raised in the literature are scattered over many disciplines, often linguistically confusing, and differing in their main reasons for criticisms. Misuses and misinterpretations of the p value are currently being discussed intensely under the label “replication crisis” in many academic disciplines and journals, ranging from specialized scientific journals to Nature and Science. In a drastic response to the crisis, the editors of the journal Basic and Applied Social Psychology even decided to ban the use of p values from future publications at the beginning of 2015, a fact that has certainly added fuel to the discussions in the relevant scientific forums. Finally, in early March, the American Statistical Association released a brief formal statement on p values that explicitly addresses misuses and misinterpretations. In this context, we systematize the most serious flaws related to the p value and discuss suggestions of how to prevent them and reduce the rate of false discoveries in the future.

  13. Mammalian RAD52 Functions in Break-Induced Replication Repair of Collapsed DNA Replication Forks

    DEFF Research Database (Denmark)

    Sotiriou, Sotirios K; Kamileri, Irene; Lugli, Natalia

    2016-01-01

    Human cancers are characterized by the presence of oncogene-induced DNA replication stress (DRS), making them dependent on repair pathways such as break-induced replication (BIR) for damaged DNA replication forks. To better understand BIR, we performed a targeted siRNA screen for genes whose...... RAD52 facilitates repair of collapsed DNA replication forks in cancer cells....

  14. Repair replication in replicating and nonreplicating DNA after irradiation with uv light

    Energy Technology Data Exchange (ETDEWEB)

    Slor, H.; Cleaver, J.E.

    1978-06-01

    Ultraviolet light induces more pyrimidine dimers and more repair replication in DNA that replicates within 2 to 3 h of irradiation than in DNA that does not replicate during this period. This difference may be due to special conformational changes in DNA and chromatin that might be associated with semiconservative DNA replication.

  15. Alignment control of GEO 600

    International Nuclear Information System (INIS)

    Grote, H; Heinzel, G; Freise, A; Gossler, S; Willke, B; Lueck, H; Ward, H; Casey, M M; Strain, K A; Robertson, D I; Hough, J; Danzmannx, K

    2004-01-01

    We give an overview of the automatic mirror alignment system of the gravitational wave detector GEO 600. In order to achieve the required sensitivity of the Michelson interferometer, the axes of interfering beams have to be superimposed with a residual angle of the order 10 -8 rad. The beam spots have to be centred on the mirrors to minimize coupling of alignment noise into longitudinal signals. We present the actual control topology and results from the system in operation, which controls all alignment degrees of the power-recycled Michelson. With this system continuous lock stretches of more than 121 h duration were achieved

  16. Control rod housing alignment apparatus

    International Nuclear Information System (INIS)

    Dixon, R.C.; Deaver, G.A.; Punches, J.R.; Singleton, G.E.; Erbes, J.G.; Offer, H.P.

    1991-01-01

    This paper discusses an alignment device for precisely locating the position of the top of a control rod drive housing from an overlying and corresponding hole and alignment pin in a core plate within a boiling water nuclear reactor. It includes a shaft, the shaft having a length sufficient to extend from the vicinity of the top of the control rod drive housing up to and through the hole in the core plate; means for registering the top of the shaft to the hole in the core plate, the registering means including means for registering with an alignment pin in the core plate adjacent the hole

  17. Prediction of molecular alignment of nucleic acids in aligned media

    International Nuclear Information System (INIS)

    Wu Bin; Petersen, Michael; Girard, Frederic; Tessari, Marco; Wijmenga, Sybren S.

    2006-01-01

    We demonstrate - using the data base of all deposited DNA and RNA structures aligned in Pf1-medium and RDC refined - that for nucleic acids in a Pf1-medium the electrostatic alignment tensor can be predicted reliably and accurately via a simple and fast calculation based on the gyration tensor spanned out by the phosphodiester atoms. The rhombicity is well predicted over its full range from 0 to 0.66, while the alignment tensor orientation is predicted correctly for rhombicities up to ca. 0.4, for larger rhombicities it appears to deviate somewhat more than expected based on structural noise and measurement error. This simple analytical approach is based on the Debye-Huckel approximation for the electrostatic interaction potential, valid at distances sufficiently far away from a poly-ionic charged surface, a condition naturally enforced when the charge of alignment medium and solute are of equal sign, as for nucleic acids in a Pf1-phage medium. For the usual salt strengths and nucleic acid sizes, the Debye-Huckel screening length is smaller than the nucleic acid size, but large enough for the collective of Debye-Huckel spheres to encompass the whole molecule. The molecular alignment is then purely electrostatic, but it's functional form is under these conditions similar to that for steric alignment. The proposed analytical expression allows for very fast calculation of the alignment tensor and hence RDCs from the conformation of the nucleic acid molecule. This information provides opportunities for improved structure determination of nucleic acids, including better assessment of dynamics in (multi-domain) nucleic acids and the possibility to incorporate alignment tensor prediction from shape directly into the structure calculation process. The procedures are incorporated into MATLAB scripts, which are available on request

  18. Outer region scaling using the freestream velocity for nonuniform open channel flow over gravel

    Science.gov (United States)

    Stewart, Robert L.; Fox, James F.

    2017-06-01

    The theoretical basis for outer region scaling using the freestream velocity for nonuniform open channel flows over gravel is derived and tested for the first time. Owing to the gradual expansion of the flow within the nonuniform case presented, it is hypothesized that the flow can be defined as an equilibrium turbulent boundary layer using the asymptotic invariance principle. The hypothesis is supported using similarity analysis to derive a solution, followed by further testing with experimental datasets. For the latter, 38 newly collected experimental velocity profiles across three nonuniform flows over gravel in a hydraulic flume are tested as are 43 velocity profiles previously published in seven peer-reviewed journal papers that focused on fluid mechanics of nonuniform open channel over gravel. The findings support the nonuniform flows as equilibrium defined by the asymptotic invariance principle, which is reflective of the consistency of the turbulent structure's form and function within the expanding flow. However, roughness impacts the flow structure when comparing across the published experimental datasets. As a secondary objective, we show how previously published mixed scales can be used to assist with freestream velocity scaling of the velocity deficit and thus empirically account for the roughness effects that extend into the outer region of the flow. One broader finding of this study is providing the theoretical context to relax the use of the elusive friction velocity when scaling nonuniform flows in gravel bed rivers; and instead to apply the freestream velocity. A second broader finding highlighted by our results is that scaling of nonuniform flow in gravel bed rivers is still not fully resolved theoretically since mixed scaling relies to some degree on empiricism. As researchers resolve the form and function of macroturbulence in the outer region, we hope to see the closing of this research gap.

  19. Automated and Adaptable Quantification of Cellular Alignment from Microscopic Images for Tissue Engineering Applications

    Science.gov (United States)

    Xu, Feng; Beyazoglu, Turker; Hefner, Evan; Gurkan, Umut Atakan

    2011-01-01

    Cellular alignment plays a critical role in functional, physical, and biological characteristics of many tissue types, such as muscle, tendon, nerve, and cornea. Current efforts toward regeneration of these tissues include replicating the cellular microenvironment by developing biomaterials that facilitate cellular alignment. To assess the functional effectiveness of the engineered microenvironments, one essential criterion is quantification of cellular alignment. Therefore, there is a need for rapid, accurate, and adaptable methodologies to quantify cellular alignment for tissue engineering applications. To address this need, we developed an automated method, binarization-based extraction of alignment score (BEAS), to determine cell orientation distribution in a wide variety of microscopic images. This method combines a sequenced application of median and band-pass filters, locally adaptive thresholding approaches and image processing techniques. Cellular alignment score is obtained by applying a robust scoring algorithm to the orientation distribution. We validated the BEAS method by comparing the results with the existing approaches reported in literature (i.e., manual, radial fast Fourier transform-radial sum, and gradient based approaches). Validation results indicated that the BEAS method resulted in statistically comparable alignment scores with the manual method (coefficient of determination R2=0.92). Therefore, the BEAS method introduced in this study could enable accurate, convenient, and adaptable evaluation of engineered tissue constructs and biomaterials in terms of cellular alignment and organization. PMID:21370940

  20. Antares automatic beam alignment system

    International Nuclear Information System (INIS)

    Appert, Q.; Swann, T.; Sweatt, W.; Saxman, A.

    1980-01-01

    Antares is a 24-beam-line CO 2 laser system for controlled fusion research, under construction at Los Alamos Scientific Laboratory (LASL). Rapid automatic alignment of this system is required prior to each experiment shot. The alignment requirements, operational constraints, and a developed prototype system are discussed. A visible-wavelength alignment technique is employed that uses a telescope/TV system to view point light sources appropriately located down the beamline. Auto-alignment is accomplished by means of a video centroid tracker, which determines the off-axis error of the point sources. The error is nulled by computer-driven, movable mirrors in a closed-loop system. The light sources are fiber-optic terminations located at key points in the optics path, primarily at the center of large copper mirrors, and remotely illuminated to reduce heating effects

  1. Fixture for aligning motor assembly

    Science.gov (United States)

    Shervington, Roger M.; Vaghani, Vallabh V.; Vanek, Laurence D.; Christensen, Scott A.

    2009-12-08

    An alignment fixture includes a rotor fixture, a stator fixture and a sensor system which measures a rotational displacement therebetween. The fixture precisely measures rotation of a generator stator assembly away from a NULL position referenced by a unique reference spline on the rotor shaft. By providing an adjustable location of the stator assembly within the housing, the magnetic axes within each generator shall be aligned to a predetermined and controlled tolerance between the generator interface mounting pin and the reference spline on the rotor shaft. Once magnetically aligned, each generator is essentially a line replaceable unit which may be readily mounted to any input of a multi-generator gearbox assembly with the assurance that the magnetic alignment will be within a predetermined tolerance.

  2. Aligning with New Digital Strategy

    DEFF Research Database (Denmark)

    Yeow, Adrian; Soh, Christina; Hansen, Rina

    2018-01-01

    Prior IS research has not fully addressed the aligning process in the highly dynamic context of digital strategy. To address this gap, we conduct a longitudinal analysis of a B2B company's journey to enact its B2C digital strategy, using the dynamic capabilities approach. We found...... that as an organization shifts towards a digital strategy, misalignments between the emergent strategy and resources give rise to tension. Our study resulted in the development of an aligning process model that is comprised of three phases (exploratory, building, and extending) and generalizable organizational aligning...... actions that form the organization's sensing, seizing, and transforming capacities. These aligning actions iteratively reconfigured organizational resources and refined strategy in order to respond to both changes in the environment and internal tensions. We also recognized that there are challenges...

  3. RNA Structural Alignments, Part I

    DEFF Research Database (Denmark)

    Havgaard, Jakob Hull; Gorodkin, Jan

    2014-01-01

    Simultaneous alignment and secondary structure prediction of RNA sequences is often referred to as "RNA structural alignment." A class of the methods for structural alignment is based on the principles proposed by Sankoff more than 25 years ago. The Sankoff algorithm simultaneously folds and aligns...... is so high that it took more than a decade before the first implementation of a Sankoff style algorithm was published. However, with the faster computers available today and the improved heuristics used in the implementations the Sankoff-based methods have become practical. This chapter describes...... the methods based on the Sankoff algorithm. All the practical implementations of the algorithm use heuristics to make them run in reasonable time and memory. These heuristics are also described in this chapter....

  4. Semiautomated improvement of RNA alignments

    DEFF Research Database (Denmark)

    Andersen, Ebbe Sloth; Lind-Thomsen, Allan; Knudsen, Bjarne

    2007-01-01

    connects to external tools to provide a flexible semiautomatic editing environment. A new method, Pcluster, is introduced for dividing the sequences of an RNA alignment into subgroups with secondary structure differences. Pcluster was used to evaluate 574 seed alignments obtained from the Rfam database...... and we identified 71 alignments with significant prediction of inconsistent base pairs and 102 alignments with significant prediction of novel base pairs. Four RNA families were used to illustrate how SARSE can be used to manually or automatically correct the inconsistent base pairs detected by Pcluster......: the mir-399 RNA, vertebrate telomase RNA (vert-TR), bacterial transfer-messenger RNA (tmRNA), and the signal recognition particle (SRP) RNA. The general use of the method is illustrated by the ability to accommodate pseudoknots and handle even large and divergent RNA families. The open architecture...

  5. XRD alignment, calibration and performance

    International Nuclear Information System (INIS)

    Davy, L.

    2002-01-01

    Full text: The quality of any diffractometer system is very much dependent on the alignment, calibration and performance. The three subjects are very much related. Firstly, you must know how to carry out the full diffractometer alignment. XRD alignment is easy once you know how. The presentation will show you step by step to carry out the full alignment. Secondly, you need to know how to calibrate the diffractometer system. The presentation will show you how to calibrate the goniometer, detector etc. Thirdly, to prove the system is working within the manufacturer specification. The presentation will show you how to carry out the resolution, reproducibility and linearity test. Copyright (2002) Australian X-ray Analytical Association Inc

  6. Sensing Characteristics of A Precision Aligner Using Moire Gratings for Precision Alignment System

    Institute of Scientific and Technical Information of China (English)

    ZHOU Lizhong; Hideo Furuhashi; Yoshiyuki Uchida

    2001-01-01

    Sensing characteristics of a precision aligner using moire gratings for precision alignment sysem has been investigated. A differential moire alignment system and a modified alignment system were used. The influence of the setting accuracy of the gap length and inclination of gratings on the alignment accuracy has been studied experimentally and theoretically. Setting accuracy of the gap length less than 2.5μm is required in modified moire alignment. There is no influence of the gap length on the alignment accuracy in the differential alignment system. The inclination affects alignment accuracies in both differential and modified moire alignment systems.

  7. The Rigors of Aligning Performance

    Science.gov (United States)

    2015-06-01

    importance of the organization’s goals. To better align the commands goals with departmental goals, setting and continuously communicating goals and goal...which is vital to highlight the importance of the organization’s goals. To better align the commands goals with departmental goals, setting and...result of the 2004 organizational restructure, and as defined in the CONOPS, NAVFAC now operates as a matrix organization with integrated “vertical

  8. Overcoming natural replication barriers: differential helicase requirements.

    Science.gov (United States)

    Anand, Ranjith P; Shah, Kartik A; Niu, Hengyao; Sung, Patrick; Mirkin, Sergei M; Freudenreich, Catherine H

    2012-02-01

    DNA sequences that form secondary structures or bind protein complexes are known barriers to replication and potential inducers of genome instability. In order to determine which helicases facilitate DNA replication across these barriers, we analyzed fork progression through them in wild-type and mutant yeast cells, using 2-dimensional gel-electrophoretic analysis of the replication intermediates. We show that the Srs2 protein facilitates replication of hairpin-forming CGG/CCG repeats and prevents chromosome fragility at the repeat, whereas it does not affect replication of G-quadruplex forming sequences or a protein-bound repeat. Srs2 helicase activity is required for hairpin unwinding and fork progression. Also, the PCNA binding domain of Srs2 is required for its in vivo role of replication through hairpins. In contrast, the absence of Sgs1 or Pif1 helicases did not inhibit replication through structural barriers, though Pif1 did facilitate replication of a telomeric protein barrier. Interestingly, replication through a protein barrier but not a DNA structure barrier was modulated by nucleotide pool levels, illuminating a different mechanism by which cells can regulate fork progression through protein-mediated stall sites. Our analyses reveal fundamental differences in the replication of DNA structural versus protein barriers, with Srs2 helicase activity exclusively required for fork progression through hairpin structures.

  9. BinAligner: a heuristic method to align biological networks.

    Science.gov (United States)

    Yang, Jialiang; Li, Jun; Grünewald, Stefan; Wan, Xiu-Feng

    2013-01-01

    The advances in high throughput omics technologies have made it possible to characterize molecular interactions within and across various species. Alignments and comparison of molecular networks across species will help detect orthologs and conserved functional modules and provide insights on the evolutionary relationships of the compared species. However, such analyses are not trivial due to the complexity of network and high computational cost. Here we develop a mixture of global and local algorithm, BinAligner, for network alignments. Based on the hypotheses that the similarity between two vertices across networks would be context dependent and that the information from the edges and the structures of subnetworks can be more informative than vertices alone, two scoring schema, 1-neighborhood subnetwork and graphlet, were introduced to derive the scoring matrices between networks, besides the commonly used scoring scheme from vertices. Then the alignment problem is formulated as an assignment problem, which is solved by the combinatorial optimization algorithm, such as the Hungarian method. The proposed algorithm was applied and validated in aligning the protein-protein interaction network of Kaposi's sarcoma associated herpesvirus (KSHV) and that of varicella zoster virus (VZV). Interestingly, we identified several putative functional orthologous proteins with similar functions but very low sequence similarity between the two viruses. For example, KSHV open reading frame 56 (ORF56) and VZV ORF55 are helicase-primase subunits with sequence identity 14.6%, and KSHV ORF75 and VZV ORF44 are tegument proteins with sequence identity 15.3%. These functional pairs can not be identified if one restricts the alignment into orthologous protein pairs. In addition, BinAligner identified a conserved pathway between two viruses, which consists of 7 orthologous protein pairs and these proteins are connected by conserved links. This pathway might be crucial for virus packing and

  10. Effects of Nonuniform Incident Illumination on the Thermal Performance of a Concentrating Triple Junction Solar Cell

    Directory of Open Access Journals (Sweden)

    Fahad Al-Amri

    2014-01-01

    Full Text Available A numerical heat transfer model was developed to investigate the temperature of a triple junction solar cell and the thermal characteristics of the airflow in a channel behind the solar cell assembly using nonuniform incident illumination. The effects of nonuniformity parameters, emissivity of the two channel walls, and Reynolds number were studied. The maximum solar cell temperature sharply increased in the presence of nonuniform light profiles, causing a drastic reduction in overall efficiency. This resulted in two possible solutions for solar cells to operate in optimum efficiency level: (i adding new receiver plate with higher surface area or (ii using forced cooling techniques to reduce the solar cell temperature. Thus, surface radiation exchanges inside the duct and Re significantly reduced the maximum solar cell temperature, but a conventional plain channel cooling system was inefficient for cooling the solar cell at medium concentrations when the system was subjected to a nonuniform light distribution. Nonuniformity of the incident light and surface radiation in the duct had negligible effects on the collected thermal energy.

  11. On natural frequencies of non-uniform beams modulated by finite periodic cells

    International Nuclear Information System (INIS)

    Xu, Yanlong; Zhou, Xiaoling; Wang, Wei; Wang, Longqi; Peng, Fujun; Li, Bin

    2016-01-01

    It is well known that an infinite periodic beam can support flexural wave band gaps. However, in real applications, the number of the periodic cells is always limited. If a uniform beam is replaced by a non-uniform beam with finite periodicity, the vibration changes are vital by mysterious. This paper employs the transfer matrix method (TMM) to study the natural frequencies of the non-uniform beams with modulation by finite periodic cells. The effects of the amounts, cross section ratios, and arrangement forms of the periodic cells on the natural frequencies are explored. The relationship between the natural frequencies of the non-uniform beams with finite periodicity and the band gap boundaries of the corresponding infinite periodic beam is also investigated. Numerical results and conclusions obtained here are favorable for designing beams with good vibration control ability. - Highlights: • The transfer matrix method to study the natural frequencies of the finite periodic non-uniform beams is derived. • The transfer matrix method to study the band gaps of the infinite periodic non-uniform beams is derived. • The effects of the periodic cells on the natural frequencies are explored. • The relationships of the natural frequencies and band gap boundaries are investigated.

  12. Space cutter compensation method for five-axis nonuniform rational basis spline machining

    Directory of Open Access Journals (Sweden)

    Yanyu Ding

    2015-07-01

    Full Text Available In view of the good machining performance of traditional three-axis nonuniform rational basis spline interpolation and the space cutter compensation issue in multi-axis machining, this article presents a triple nonuniform rational basis spline five-axis interpolation method, which uses three nonuniform rational basis spline curves to describe cutter center location, cutter axis vector, and cutter contact point trajectory, respectively. The relative position of the cutter and workpiece is calculated under the workpiece coordinate system, and the cutter machining trajectory can be described precisely and smoothly using this method. The three nonuniform rational basis spline curves are transformed into a 12-dimentional Bézier curve to carry out discretization during the discrete process. With the cutter contact point trajectory as the precision control condition, the discretization is fast. As for different cutters and corners, the complete description method of space cutter compensation vector is presented in this article. Finally, the five-axis nonuniform rational basis spline machining method is further verified in a two-turntable five-axis machine.

  13. On natural frequencies of non-uniform beams modulated by finite periodic cells

    Energy Technology Data Exchange (ETDEWEB)

    Xu, Yanlong, E-mail: xuyanlong@nwpu.edu.cn [School of Aeronautics, Northwestern Polytechnical University, Xi' an 710072, Shaanxi (China); Zhou, Xiaoling [Shanghai Institute of Aerospace System Engineering, Shanghai 201109 (China); Wang, Wei [School of Aeronautics, Northwestern Polytechnical University, Xi' an 710072, Shaanxi (China); Wang, Longqi [School of Civil & Environmental Engineering, Nanyang Technological University, 50 Nanyang Avenue, Singapore 639798 (Singapore); Peng, Fujun [Shanghai Institute of Aerospace System Engineering, Shanghai 201109 (China); Li, Bin [School of Aeronautics, Northwestern Polytechnical University, Xi' an 710072, Shaanxi (China)

    2016-09-23

    It is well known that an infinite periodic beam can support flexural wave band gaps. However, in real applications, the number of the periodic cells is always limited. If a uniform beam is replaced by a non-uniform beam with finite periodicity, the vibration changes are vital by mysterious. This paper employs the transfer matrix method (TMM) to study the natural frequencies of the non-uniform beams with modulation by finite periodic cells. The effects of the amounts, cross section ratios, and arrangement forms of the periodic cells on the natural frequencies are explored. The relationship between the natural frequencies of the non-uniform beams with finite periodicity and the band gap boundaries of the corresponding infinite periodic beam is also investigated. Numerical results and conclusions obtained here are favorable for designing beams with good vibration control ability. - Highlights: • The transfer matrix method to study the natural frequencies of the finite periodic non-uniform beams is derived. • The transfer matrix method to study the band gaps of the infinite periodic non-uniform beams is derived. • The effects of the periodic cells on the natural frequencies are explored. • The relationships of the natural frequencies and band gap boundaries are investigated.

  14. An Investigation into Conversion from Non-Uniform Rational B-Spline Boundary Representation Geometry to Constructive Solid Geometry

    Science.gov (United States)

    2015-12-01

    ARL-SR-0347 ● DEC 2015 US Army Research Laboratory An Investigation into Conversion from Non-Uniform Rational B-Spline Boundary...US Army Research Laboratory An Investigation into Conversion from Non-Uniform Rational B-Spline Boundary Representation Geometry to...from Non-Uniform Rational B-Spline Boundary Representation Geometry to Constructive Solid Geometry 5a. CONTRACT NUMBER 5b. GRANT NUMBER 5c

  15. Surface micro topography replication in injection moulding

    DEFF Research Database (Denmark)

    Arlø, Uffe Rolf

    Thermoplastic injection moulding is a widely used industrial process that involves surface generation by replication. The surface topography of injection moulded plastic parts can be important for aesthetical or technical reasons. With the emergence of microengineering and nanotechnology additional...... importance of surface topography follows. In general the replication is not perfect and the topography of the plastic part differs from the inverse topography of the mould cavity. It is desirable to be able to control the degree of replication perfection or replication quality. This requires an understanding...... of the physical mechanisms of replication. Such understanding can lead to improved process design and facilitate in-line process quality control with respect to surface properties. The purpose of the project is to identify critical factors that affect topography replication quality and to obtain an understanding...

  16. Replicating chromatin: a tale of histones

    DEFF Research Database (Denmark)

    Groth, Anja

    2009-01-01

    Chromatin serves structural and functional roles crucial for genome stability and correct gene expression. This organization must be reproduced on daughter strands during replication to maintain proper overlay of epigenetic fabric onto genetic sequence. Nucleosomes constitute the structural...... framework of chromatin and carry information to specify higher-order organization and gene expression. When replication forks traverse the chromosomes, nucleosomes are transiently disrupted, allowing the replication machinery to gain access to DNA. Histone recycling, together with new deposition, ensures...

  17. Geodetic alignment of laser power installations

    International Nuclear Information System (INIS)

    Shtorm, V.V.; Gostev, A.M.; Drobikov, A.V.

    1989-01-01

    Main problems occuring in applied geodesy under initial alignment of laser power installation optical channel are considered. Attention is paid to alignment of lens beamguide telescopic pairs and alignment quality control. Methods and means of geodetic measurements under alignment are indicated. Conclusions are made about the degree of working through certain aspects of the problem

  18. Nonuniform charging effects on ion drag force in drifting dusty plasmas

    International Nuclear Information System (INIS)

    Chang, Dong-Man; Chang, Won-Seok; Jung, Young-Dae

    2006-01-01

    The nonuniform polarization charging effects on the ion drag force are investigated in drifting dusty plasmas. The ion drag force due to the ion-dust grain interaction is obtained as a function of the dust charge, ion charge, plasma temperature, Mach number, Debye length, and collision energy. The result shows that the nonuniform charging effects enhance the momentum transfer cross section as well as the ion drag force. It is found that the momentum transfer cross section and the ion drag force including nonuniform polarization charging effects increase with increasing the Mach number and also the ion drag force increases with increasing the temperature. In addition, it is found that the ion drag force is slightly decreasing with an increase of the Debye length

  19. Experimental observation of the inductive electric field and related plasma nonuniformity in high frequency capacitive discharge

    International Nuclear Information System (INIS)

    Ahn, S. K.; Chang, H. Y.

    2008-01-01

    To elucidate plasma nonuniformity in high frequency capacitive discharges, Langmuir probe and B-dot probe measurements were carried out in the radial direction in a cylindrical capacitive discharge driven at 90 MHz with argon pressures of 50 and 400 mTorr. Through the measurements, a significant inductive electric field (i.e., time-varying magnetic field) was observed at the radial edge, and it was found that the inductive electric field creates strong plasma nonuniformity at high pressure operation. The plasma nonuniformity at high pressure operation is physically similar to the E-H mode transition typically observed in inductive discharges. This result agrees well with the theories of electromagnetic effects in large area and/or high frequency capacitive discharges

  20. Joint de-blurring and nonuniformity correction method for infrared microscopy imaging

    Science.gov (United States)

    Jara, Anselmo; Torres, Sergio; Machuca, Guillermo; Ramírez, Wagner; Gutiérrez, Pablo A.; Viafora, Laura A.; Godoy, Sebastián E.; Vera, Esteban

    2018-05-01

    In this work, we present a new technique to simultaneously reduce two major degradation artifacts found in mid-wavelength infrared microscopy imagery, namely the inherent focal-plane array nonuniformity noise and the scene defocus presented due to the point spread function of the infrared microscope. We correct both nuisances using a novel, recursive method that combines the constant range nonuniformity correction algorithm with a frame-by-frame deconvolution approach. The ability of the method to jointly compensate for both nonuniformity noise and blur is demonstrated using two different real mid-wavelength infrared microscopic video sequences, which were captured from two microscopic living organisms using a Janos-Sofradir mid-wavelength infrared microscopy setup. The performance of the proposed method is assessed on real and simulated infrared data by computing the root mean-square error and the roughness-laplacian pattern index, which was specifically developed for the present work.

  1. An efficient shutter-less non-uniformity correction method for infrared focal plane arrays

    Science.gov (United States)

    Huang, Xiyan; Sui, Xiubao; Zhao, Yao

    2017-02-01

    The non-uniformity response in infrared focal plane array (IRFPA) detectors has a bad effect on images with fixed pattern noise. At present, it is common to use shutter to prevent from radiation of target and to update the parameters of non-uniformity correction in the infrared imaging system. The use of shutter causes "freezing" image. And inevitably, there exists the problems of the instability and reliability of system, power consumption, and concealment of infrared detection. In this paper, we present an efficient shutter-less non-uniformity correction (NUC) method for infrared focal plane arrays. The infrared imaging system can use the data gaining in thermostat to calculate the incident infrared radiation by shell real-timely. And the primary output of detector except the shell radiation can be corrected by the gain coefficient. This method has been tested in real infrared imaging system, reaching high correction level, reducing fixed pattern noise, adapting wide temperature range.

  2. Vibration of nonuniform carbon nanotube with attached mass via nonlocal Timoshenko beam theory

    International Nuclear Information System (INIS)

    Tang, Hai Li; Shen, Zhi Bin; Li, Dao Kui

    2014-01-01

    This paper studies the vibrational behavior of nonuniform single-walled carbon nanotube (SWCNT) carrying a nanoparticle. A nonuniform cantilever beam with a concentrated mass at the free end is analyzed according to the nonlocal Timoshenko beam theory. A governing equation of a nonuniform SWCNT with attached mass is established. The transfer function method incorporating with the perturbation method is utilized to obtain the resonant frequencies of a vibrating nonlocal cantilever-mass system. The effects of the nonlocal parameter, taper ratio and attached mass on the natural frequencies and frequency shifts are discussed. Obtained results indicate that the sensitivity of the frequency shifts on the attached mass increases when the length-to-diameter ratio decreases. Tapered SWCNT possesses higher fundamental frequencies if the taper ratio becomes larger.

  3. Computer Simulation of Nonuniform MTLs via Implicit Wendroff and State-Variable Methods

    Directory of Open Access Journals (Sweden)

    L. Brancik

    2011-04-01

    Full Text Available The paper deals with techniques for a computer simulation of nonuniform multiconductor transmission lines (MTLs based on the implicit Wendroff and the statevariable methods. The techniques fall into a class of finitedifference time-domain (FDTD methods useful to solve various electromagnetic systems. Their basic variants are extended and modified to enable solving both voltage and current distributions along nonuniform MTL’s wires and their sensitivities with respect to lumped and distributed parameters. An experimental error analysis is performed based on the Thomson cable whose analytical solutions are known, and some examples of simulation of both uniform and nonuniform MTLs are presented. Based on the Matlab language programme, CPU times are analyzed to compare efficiency of the methods. Some results for nonlinear MTLs simulation are presented as well.

  4. A poloidal non-uniformity of the collisionless parallel current in a tokamak plasma

    Energy Technology Data Exchange (ETDEWEB)

    Romannikov, A.; Fenzi-Bonizec, C

    2005-07-01

    The collisionless distortion of the ion (electron) distribution function at certain points on a magnetic surface is studied in the framework of a simple model of a large aspect ratio tokamak plasma. The flow velocity driven by this distortion is calculated. The possibility of an additional non-uniform collisionless parallel current density on a magnetic surface, other than the known neo-classical non-uniformity is shown. The difference between the parallel current density on the low and high field side of a magnetic surface is close to the neoclassical bootstrap current density. The first Tore-Supra experimental test indicates the possibility of the poloidal non-uniformity of the parallel current density. (authors)

  5. Research on Creep Relaxation Non-uniformity and Effect on Performance of Combined Rotor

    Science.gov (United States)

    Liu, Qingya; He, Jingfei; Zhao, Lijia

    2017-11-01

    The combined rotor of gas turbine is connected by a certain number of rod bolts. It works in the high temperature environment for a long time, and the rod bolts will creep and relax. Under the influence of elastic interaction, the loss of pretightening force of rod bolts at different positions is non-uniform, which will cause the connection of the combined rotor to be out of tune. In this paper, the creep relaxation non-uniformity model for a class F heavy duty gas turbine is established. On the basis of this, the performance degradation and structural strength change of combined rotor resulting from creep relaxation non-uniformity of rod bolts are studied. The results show that the ratio of preload mistuning increases with time and then converges, and there is a threshold inflection point in about seven thousand hours.

  6. Derivation of nonlinear wave equations for ultrasound beam in nonuniform bubbly liquids

    Science.gov (United States)

    Kanagawa, Tetsuya; Yano, Takeru; Kawahara, Junya; Kobayashi, Kazumichi; Watanabe, Masao; Fujikawa, Shigeo

    2012-09-01

    Weakly nonlinear propagation of diffracted ultrasound beams in a nonuniform bubbly liquid is theoretically studied based on the method of multiple scales with the set of scaling relations of some physical parameters. It is assumed that the spatial distribution of the number density of bubbles in an initial state at rest is a slowly varying function of space coordinates and the amplitude of its variation is small compared with a mean number density. As a result, a Khokhlov-Zabolotskaya-Kuznetsov (KZK) equation with dispersion and nonuniform effects for a low frequency case and a nonlinear Schrödinger (NLS) equation with dissipation, diffraction, and nonuniform effects for a high frequency case, are derived from the basic equations of bubbly flows.

  7. Nonuniform transformation field analysis of multiphase elasto viscoplastic materials: application to MOX fuels

    International Nuclear Information System (INIS)

    Roussette, S.

    2005-05-01

    The description of the overall behavior of nonlinear materials with nonlinear dissipative phases requires an infinity of internal variables. An approximate model involving only a finite number of internal variables, Nonuniform Transformation Field Analysis, is obtained by considering a decomposition of these variables on a finite set of nonuniform transformation fields, called plastic modes. The method is initially developed for incompressible elasto viscoplastic materials. Karhunen-Loeve expansion is proposed to optimize the plastic modes. Then the method is extended to porous elasto viscoplastic materials. Finally the transformation field analysis, developed by Dvorak, is applied to nuclear fuels MOX. This method enables to make sensitivity studies to determine the role of some microstructural parameters on the fuel behaviour. Moreover the adequacy of the nonuniform method for fuels MOX is shown, the final objective being to be able to apply the model to the MOX in 3D. (author)

  8. Circumferential nonuniformity of cladding radiation swelling of fast reactor peripheral fuel elements

    International Nuclear Information System (INIS)

    Reutov, V.F.; Farkhutdinov, K.G.

    1977-01-01

    The results are presented of the investigation into the perimeter radiation swelling of Kh18N10T stainless steel cladding in different cross sections of a peripheral fuel element of the BR-5 reactor. The fluence on the cladding is 1.8-2.9 x 10 22 fast neutr/cm 2 , the operating temperatures in different parts of the fuel element being 430 deg to 585 deg C. There has been observed circumferential non-uniformity of the distribution, concentration, and of the total volume of radiation cavities, which is due to temperature non-uniformity along the cladding perimeter. It is shown that such non-uniformity of radiation swelling of the cladding material may result in bending of the peripheral fuel element with regard to the fuel assembly sheath walls

  9. Enzymatic recognition of DNA replication origins

    International Nuclear Information System (INIS)

    Stayton, M.M.; Bertsch, L.; Biswas, S.

    1983-01-01

    In this paper we discuss the process of recognition of the complementary-strand origin with emphasis on RNA polymerase action in priming M13 DNA replication, the role of primase in G4 DNA replication, and the function of protein n, a priming protein, during primosome assembly. These phage systems do not require several of the bacterial DNA replication enzymes, particularly those involved in the regulation of chromosome copy number of the initiatiion of replication of duplex DNA. 51 references, 13 figures, 1 table

  10. Alignment method for parabolic trough solar concentrators

    Science.gov (United States)

    Diver, Richard B [Albuquerque, NM

    2010-02-23

    A Theoretical Overlay Photographic (TOP) alignment method uses the overlay of a theoretical projected image of a perfectly aligned concentrator on a photographic image of the concentrator to align the mirror facets of a parabolic trough solar concentrator. The alignment method is practical and straightforward, and inherently aligns the mirror facets to the receiver. When integrated with clinometer measurements for which gravity and mechanical drag effects have been accounted for and which are made in a manner and location consistent with the alignment method, all of the mirrors on a common drive can be aligned and optimized for any concentrator orientation.

  11. Strategic Alignment and New Product Development

    DEFF Research Database (Denmark)

    Acur, Nuran; Kandemir, Destan; Boer, Harry

    2012-01-01

    Strategic alignment is widely accepted as a prerequisite for a firm’s success, but insight into the role of alignment in, and its impact on, the new product evelopment (NPD) process and its performance is less well developed. Most publications on this topic either focus on one form of alignment...... of NPD performance indicators. Strategic planning and innovativeness appear to affect technological, market, and NPD-marketing alignment positively. Environmental munificence is negatively associated with NPD-marketing alignment, but has no effect on the two other forms of alignment. Technological change...... has a positive effect on technological alignment, a negative effect on NPD-marketing alignment, but no effect on market alignment. These findings suggest that internal capabilities are more likely to be associated with the development of strategic alignment than environmental factors are. Furthermore...

  12. DIDA: Distributed Indexing Dispatched Alignment.

    Directory of Open Access Journals (Sweden)

    Hamid Mohamadi

    Full Text Available One essential application in bioinformatics that is affected by the high-throughput sequencing data deluge is the sequence alignment problem, where nucleotide or amino acid sequences are queried against targets to find regions of close similarity. When queries are too many and/or targets are too large, the alignment process becomes computationally challenging. This is usually addressed by preprocessing techniques, where the queries and/or targets are indexed for easy access while searching for matches. When the target is static, such as in an established reference genome, the cost of indexing is amortized by reusing the generated index. However, when the targets are non-static, such as contigs in the intermediate steps of a de novo assembly process, a new index must be computed for each run. To address such scalability problems, we present DIDA, a novel framework that distributes the indexing and alignment tasks into smaller subtasks over a cluster of compute nodes. It provides a workflow beyond the common practice of embarrassingly parallel implementations. DIDA is a cost-effective, scalable and modular framework for the sequence alignment problem in terms of memory usage and runtime. It can be employed in large-scale alignments to draft genomes and intermediate stages of de novo assembly runs. The DIDA source code, sample files and user manual are available through http://www.bcgsc.ca/platform/bioinfo/software/dida. The software is released under the British Columbia Cancer Agency License (BCCA, and is free for academic use.

  13. Optimization of sequence alignment for simple sequence repeat regions

    Directory of Open Access Journals (Sweden)

    Ogbonnaya Francis C

    2011-07-01

    Full Text Available Abstract Background Microsatellites, or simple sequence repeats (SSRs, are tandemly repeated DNA sequences, including tandem copies of specific sequences no longer than six bases, that are distributed in the genome. SSR has been used as a molecular marker because it is easy to detect and is used in a range of applications, including genetic diversity, genome mapping, and marker assisted selection. It is also very mutable because of slipping in the DNA polymerase during DNA replication. This unique mutation increases the insertion/deletion (INDELs mutation frequency to a high ratio - more than other types of molecular markers such as single nucleotide polymorphism (SNPs. SNPs are more frequent than INDELs. Therefore, all designed algorithms for sequence alignment fit the vast majority of the genomic sequence without considering microsatellite regions, as unique sequences that require special consideration. The old algorithm is limited in its application because there are many overlaps between different repeat units which result in false evolutionary relationships. Findings To overcome the limitation of the aligning algorithm when dealing with SSR loci, a new algorithm was developed using PERL script with a Tk graphical interface. This program is based on aligning sequences after determining the repeated units first, and the last SSR nucleotides positions. This results in a shifting process according to the inserted repeated unit type. When studying the phylogenic relations before and after applying the new algorithm, many differences in the trees were obtained by increasing the SSR length and complexity. However, less distance between different linage had been observed after applying the new algorithm. Conclusions The new algorithm produces better estimates for aligning SSR loci because it reflects more reliable evolutionary relations between different linages. It reduces overlapping during SSR alignment, which results in a more realistic

  14. Sales Territory Alignment: A Review and Model

    OpenAIRE

    Andris A. Zoltners; Prabhakant Sinha

    1983-01-01

    The sales territory alignment problem may be viewed as the problem of grouping small geographic sales coverage units into larger geographic clusters called sales territories in a way that the sales territories are acceptable according to managerially relevant alignment criteria. This paper first reviews sales territory alignment models which have appeared in the marketing literature. A framework for sales territory alignment and several properties of a good sales territory alignment are devel...

  15. Photocathode non-uniformity contribution to the energy resolution of scintillators

    International Nuclear Information System (INIS)

    Mottaghian, M.; Koohi-Fayegh, R.; Ghal-Eh, N.; Etaati, G. R.

    2010-01-01

    This paper introduces the basics of the light transport simulation in scintillators and the wavelength-dependencies in the process. The non-uniformity measurement of the photocathode surface is undertaken, showing that for the photocathode used in this study the quantum efficiency falls to about 4% of its maximum value, especially in areas far from the centre. The wavelength-and position-dependent quantum efficiency is implemented in the Monte Carlo light transport code, showing that, the contribution of the photocathode non-uniformity to the energy resolution is estimated to be around 18%, when all position-and wavelength-dependencies are included. (authors)

  16. Effects of non-uniformities on electrical conduction in weakly ionized plasmas

    International Nuclear Information System (INIS)

    Numano, M.; Murakami, Y.; Nitta, T.

    1989-01-01

    The effect of non-uniformities on the flow of electric current in weakly ionized plasmas is investigated by taking into account the ion slip as well as the Hall current. An Ohm's law for a non-uniform plasma is derived, from which the formula previously obtained by Numano, i.e. an extension of Rosa's equation, is obtainable as a special case. Making use of this new Ohm's law, the effective electrical conductivity and the effective Hall parameter are determined for isotropically turbulent plasmas. It is found that when the ion-slip effect is absent they are in good agreement with the results obtained previously. (author)

  17. Generation of zonal magnetic fields by drift waves in a current carrying nonuniform magnetoplasma

    International Nuclear Information System (INIS)

    Shukla, Nitin; Shukla, P.K.

    2010-01-01

    It is shown that zonal magnetic fields (ZMFs) can be nonlinearly excited by incoherent drift waves (DWs) in a current carrying nonuniform magnetoplasma. The dynamics of incoherent DWs in the presence of ZMFs is governed by a wave-kinetic equation. The governing equation for ZMFs in the presence of nonlinear advection force of the DWs is obtained from the parallel component of the electron momentum equation and the Faraday law. Standard techniques are used to derive a nonlinear dispersion relation, which depicts instability via which ZMFs are excited in plasmas. ZMFs may inhibit the turbulent cross-field particle and energy transport in a nonuniform magnetoplasma.

  18. The Pierce diode with an external circuit: II, Non-uniform equilibria

    International Nuclear Information System (INIS)

    Lawson, W.S.

    1987-01-01

    The non-uniform (non-linear) equilibria of the classical (short circuit) Pierce diode and the extended (series RLC external circuit) Pierce diode are described theoretically, and explored via computer simulation. It is found that most equilibria are correctly predicted by theory, but that the continuous set of equilibria of the classical Pierce diode at α = 2π are not observed. The stability characteristics of the non-uniform equilibria are also worked out, and are consistent with the simulations. 8 refs., 22 figs., 3 tabs

  19. Additive non-uniform random sampling in superimposed fiber Bragg grating strain gauge

    International Nuclear Information System (INIS)

    Ma, Y C; Liu, H Y; Yan, S B; Li, J M; Tang, J; Yang, Y H; Yang, M W

    2013-01-01

    This paper demonstrates an additive non-uniform random sampling and interrogation method for dynamic and/or static strain gauge using a reflection spectrum from two superimposed fiber Bragg gratings (FBGs). The superimposed FBGs are designed to generate non-equidistant space of a sensing pulse train in the time domain during dynamic strain gauge. By combining centroid finding with smooth filtering methods, both the interrogation speed and accuracy are improved. A 1.9 kHz dynamic strain is measured by generating an additive non-uniform randomly distributed 2 kHz optical sensing pulse train from a mean 500 Hz triangular periodically changing scanning frequency. (paper)

  20. Additive non-uniform random sampling in superimposed fiber Bragg grating strain gauge

    Science.gov (United States)

    Ma, Y. C.; Liu, H. Y.; Yan, S. B.; Yang, Y. H.; Yang, M. W.; Li, J. M.; Tang, J.

    2013-05-01

    This paper demonstrates an additive non-uniform random sampling and interrogation method for dynamic and/or static strain gauge using a reflection spectrum from two superimposed fiber Bragg gratings (FBGs). The superimposed FBGs are designed to generate non-equidistant space of a sensing pulse train in the time domain during dynamic strain gauge. By combining centroid finding with smooth filtering methods, both the interrogation speed and accuracy are improved. A 1.9 kHz dynamic strain is measured by generating an additive non-uniform randomly distributed 2 kHz optical sensing pulse train from a mean 500 Hz triangular periodically changing scanning frequency.

  1. A dynamic model of gas flow in a non-uniform pipe

    International Nuclear Information System (INIS)

    Mensah, S.; Lepp, R.M.

    1979-08-01

    A gas-line model, based on the analysis of compressible flow with friction, has been developed to describe the dynamics of gas flow in a non-uniform line, i.e. one comprising segments of different lengths and diameters. Acoustic wave analysis was used in a novel way, by considering the line as a cascaded connection of uniform pipes separated by discontinuities. The transmission matrix representing this non-uniform line is the product of the matrices for each element in the system. To facilitate implementation of the theoretical model on a hybrid computer, modal approximatons to its transfer functions were derived. Both models were validated against experimental data. (author)

  2. Wastewater diffusive dilution and sedimentation of the fine contaminated particles for nonuniform flow in open channels

    OpenAIRE

    Lyapin Anton; Lyapin Valery

    2018-01-01

    The influence of non-uniformity on mass transfer processes in open channels have been investigated under the action of urbanization factors. The study is related to the urgent problem of environmental degradation of water objects in urbanized areas. It is known that the water quality in the water objects depends on the manner in which the contaminants spread how they mix with the river water and diluted by it. The main results of the study consist of recommendations to incorporate non-uniform...

  3. Magnetic-field-aligned characteristics of plasma bubbles in the nighttime equatorial ionosphere

    International Nuclear Information System (INIS)

    Tsunoda, R.T.

    1980-01-01

    Measurements of both incoherent-scatter (IS) and backscatter from field-aligned irregularities (FAI) were made in 1978 with ALTAIR, a fully-steerable high-power radar, to investigate the magnetic-field-aligned characteristics of equatorial plasma bubbles. By operating the radar in a latitude-scan IS mode it was possible to map the location and percentage depletion of plasma bubbles as a function of altitude. By showing that backscatter from FAI is spatially collocated with the upper wall of plasma bubbles it was possible to use the spatial displacement of a field aligned backscatter region to estimate the upward bubble velocity. Besides showing that plasma bubbles are indeed aligned along magnetic field lines, this data set is used to show that a plasma bubble with a percentage depletion of as much as 90% does not have as large an upward velocity as predicted by two-dimensional models. Instead, the inferred bubble velocity is shown to be in better agreement with the bubble velocity predicted by theoretical models using flux-integrated values of electron density and Pedersen conductivity. The need to use flux-tube-integrated values when comparing theory and observation is further stressed by the presence of a non-uniform latitudinal distribution of electron density (i.e. the equatorial anomaly) that was found in the latitude-scan data. (author)

  4. ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment

    Directory of Open Access Journals (Sweden)

    Kim Taeho

    2010-09-01

    Full Text Available Abstract Background There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited in their ability to handle very large amounts of sequences because the system lacks a scalable high-performance computing (HPC environment with a greatly extended data storage capacity. Results We designed ClustalXeed, a software system for multiple sequence alignment with incremental improvements over previous versions of the ClustalX and ClustalW-MPI software. The primary advantage of ClustalXeed over other multiple sequence alignment software is its ability to align a large family of protein or nucleic acid sequences. To solve the conventional memory-dependency problem, ClustalXeed uses both physical random access memory (RAM and a distributed file-allocation system for distance matrix construction and pair-align computation. The computation efficiency of disk-storage system was markedly improved by implementing an efficient load-balancing algorithm, called "idle node-seeking task algorithm" (INSTA. The new editing option and the graphical user interface (GUI provide ready access to a parallel-computing environment for users who seek fast and easy alignment of large DNA and protein sequence sets. Conclusions ClustalXeed can now compute a large volume of biological sequence data sets, which were not tractable in any other parallel or single MSA program. The main developments include: 1 the ability to tackle larger sequence alignment problems than possible with previous systems through markedly improved storage-handling capabilities. 2 Implementing an efficient task load-balancing algorithm, INSTA, which improves overall processing times for multiple sequence alignment with input sequences of non-uniform length. 3 Support for both single PC and distributed cluster systems.

  5. Replicative Intermediates of Human Papillomavirus Type 11 in Laryngeal Papillomas: Site of Replication Initiation and Direction of Replication

    Science.gov (United States)

    Auborn, K. J.; Little, R. D.; Platt, T. H. K.; Vaccariello, M. A.; Schildkraut, C. L.

    1994-07-01

    We have examined the structures of replication intermediates from the human papillomavirus type 11 genome in DNA extracted from papilloma lesions (laryngeal papillomas). The sites of replication initiation and termination utilized in vivo were mapped by using neutral/neutral and neutral/alkaline two-dimensional agarose gel electrophoresis methods. Initiation of replication was detected in or very close to the upstream regulatory region (URR; the noncoding, regulatory sequences upstream of the open reading frames in the papillomavirus genome). We also show that replication forks proceed bidirectionally from the origin and converge 180circ opposite the URR. These results demonstrate the feasibility of analysis of replication of viral genomes directly from infected tissue.

  6. Activation of human herpesvirus replication by apoptosis.

    Science.gov (United States)

    Prasad, Alka; Remick, Jill; Zeichner, Steven L

    2013-10-01

    A central feature of herpesvirus biology is the ability of herpesviruses to remain latent within host cells. Classically, exposure to inducing agents, like activating cytokines or phorbol esters that stimulate host cell signal transduction events, and epigenetic agents (e.g., butyrate) was thought to end latency. We recently showed that Kaposi's sarcoma-associated herpesvirus (KSHV, or human herpesvirus-8 [HHV-8]) has another, alternative emergency escape replication pathway that is triggered when KSHV's host cell undergoes apoptosis, characterized by the lack of a requirement for the replication and transcription activator (RTA) protein, accelerated late gene kinetics, and production of virus with decreased infectivity. Caspase-3 is necessary and sufficient to initiate the alternative replication program. HSV-1 was also recently shown to initiate replication in response to host cell apoptosis. These observations suggested that an alternative apoptosis-triggered replication program might be a general feature of herpesvirus biology and that apoptosis-initiated herpesvirus replication may have clinical implications, particularly for herpesviruses that almost universally infect humans. To explore whether an alternative apoptosis-initiated replication program is a common feature of herpesvirus biology, we studied cell lines latently infected with Epstein-Barr virus/HHV-4, HHV-6A, HHV-6B, HHV-7, and KSHV. We found that apoptosis triggers replication for each HHV studied, with caspase-3 being necessary and sufficient for HHV replication. An alternative apoptosis-initiated replication program appears to be a common feature of HHV biology. We also found that commonly used cytotoxic chemotherapeutic agents activate HHV replication, which suggests that treatments that promote apoptosis may lead to activation of latent herpesviruses, with potential clinical significance.

  7. Grain alignment in starless cores

    International Nuclear Information System (INIS)

    Jones, T. J.; Bagley, M.; Krejny, M.; Andersson, B.-G.; Bastien, P.

    2015-01-01

    We present near-IR polarimetry data of background stars shining through a selection of starless cores taken in the K band, probing visual extinctions up to A V ∼48. We find that P K /τ K continues to decline with increasing A V with a power law slope of roughly −0.5. Examination of published submillimeter (submm) polarimetry of starless cores suggests that by A V ≳20 the slope for P versus τ becomes ∼−1, indicating no grain alignment at greater optical depths. Combining these two data sets, we find good evidence that, in the absence of a central illuminating source, the dust grains in dense molecular cloud cores with no internal radiation source cease to become aligned with the local magnetic field at optical depths greater than A V ∼20. A simple model relating the alignment efficiency to the optical depth into the cloud reproduces the observations well.

  8. Laser shaft alignment measurement model

    Science.gov (United States)

    Mo, Chang-tao; Chen, Changzheng; Hou, Xiang-lin; Zhang, Guoyu

    2007-12-01

    Laser beam's track which is on photosensitive surface of the a receiver will be closed curve, when driving shaft and the driven shaft rotate with same angular velocity and rotation direction. The coordinate of arbitrary point which is on the curve is decided by the relative position of two shafts. Basing on the viewpoint, a mathematic model of laser alignment is set up. By using a data acquisition system and a data processing model of laser alignment meter with single laser beam and a detector, and basing on the installation parameter of computer, the state parameter between two shafts can be obtained by more complicated calculation and correction. The correcting data of the four under chassis of the adjusted apparatus moving on the level and the vertical plane can be calculated. This will instruct us to move the apparatus to align the shafts.

  9. Adaptive Processing for Sequence Alignment

    KAUST Repository

    Zidan, Mohammed A.; Bonny, Talal; Salama, Khaled N.

    2012-01-01

    Disclosed are various embodiments for adaptive processing for sequence alignment. In one embodiment, among others, a method includes obtaining a query sequence and a plurality of database sequences. A first portion of the plurality of database sequences is distributed to a central processing unit (CPU) and a second portion of the plurality of database sequences is distributed to a graphical processing unit (GPU) based upon a predetermined splitting ratio associated with the plurality of database sequences, where the database sequences of the first portion are shorter than the database sequences of the second portion. A first alignment score for the query sequence is determined with the CPU based upon the first portion of the plurality of database sequences and a second alignment score for the query sequence is determined with the GPU based upon the second portion of the plurality of database sequences.

  10. Adaptive Processing for Sequence Alignment

    KAUST Repository

    Zidan, Mohammed A.

    2012-01-26

    Disclosed are various embodiments for adaptive processing for sequence alignment. In one embodiment, among others, a method includes obtaining a query sequence and a plurality of database sequences. A first portion of the plurality of database sequences is distributed to a central processing unit (CPU) and a second portion of the plurality of database sequences is distributed to a graphical processing unit (GPU) based upon a predetermined splitting ratio associated with the plurality of database sequences, where the database sequences of the first portion are shorter than the database sequences of the second portion. A first alignment score for the query sequence is determined with the CPU based upon the first portion of the plurality of database sequences and a second alignment score for the query sequence is determined with the GPU based upon the second portion of the plurality of database sequences.

  11. DNA replication and cancer: From dysfunctional replication origin activities to therapeutic opportunities.

    Science.gov (United States)

    Boyer, Anne-Sophie; Walter, David; Sørensen, Claus Storgaard

    2016-06-01

    A dividing cell has to duplicate its DNA precisely once during the cell cycle to preserve genome integrity avoiding the accumulation of genetic aberrations that promote diseases such as cancer. A large number of endogenous impacts can challenge DNA replication and cells harbor a battery of pathways to promote genome integrity during DNA replication. This includes suppressing new replication origin firing, stabilization of replicating forks, and the safe restart of forks to prevent any loss of genetic information. Here, we describe mechanisms by which oncogenes can interfere with DNA replication thereby causing DNA replication stress and genome instability. Further, we describe cellular and systemic responses to these insults with a focus on DNA replication restart pathways. Finally, we discuss the therapeutic potential of exploiting intrinsic replicative stress in cancer cells for targeted therapy. Copyright © 2016 Elsevier Ltd. All rights reserved.

  12. Replacing fuel alignment in Germany

    International Nuclear Information System (INIS)

    Poetz, F.; Kalthoff, W.

    1991-01-01

    Up to the end of 1989 varying numbers of broken fuel alignment pins were detected in several German PWRs (80 broken pins in all). The distribution of these broken pins over the core cross-section was more or less random. The problem was due to the stress corrosion cracking of the pin material and was restricted to individual pins. It was concluded that all fuel alignment pins made of Inconel X-750 should be replaced. The development of a new pin, more resistant to intergranular stress corrosion, and the replacement technique are outlined. (author)

  13. Measurements of magnetic field alignment

    International Nuclear Information System (INIS)

    Kuchnir, M.; Schmidt, E.E.

    1987-01-01

    The procedure for installing Superconducting Super Collider (SSC) dipoles in their respective cryostats involves aligning the average direction of their field with the vertical to an accuracy of 0.5 mrad. The equipment developed for carrying on these measurements is described and the measurements performed on the first few prototypes SSC magnets are presented. The field angle as a function of position in these 16.6 m long magnets is a characteristic of the individual magnet with possible feedback information to its manufacturing procedure. A comparison of this vertical alignment characteristic with a magnetic field intensity (by NMR) characteristic for one of the prototypes is also presented. 5 refs., 7 figs

  14. XUV ionization of aligned molecules

    Energy Technology Data Exchange (ETDEWEB)

    Kelkensberg, F.; Siu, W.; Gademann, G. [FOM Institute AMOLF, Science Park 104, NL-1098 XG Amsterdam (Netherlands); Rouzee, A.; Vrakking, M. J. J. [FOM Institute AMOLF, Science Park 104, NL-1098 XG Amsterdam (Netherlands); Max-Born-Institut, Max-Born Strasse 2A, D-12489 Berlin (Germany); Johnsson, P. [FOM Institute AMOLF, Science Park 104, NL-1098 XG Amsterdam (Netherlands); Department of Physics, Lund University, Post Office Box 118, SE-221 00 Lund (Sweden); Lucchini, M. [Department of Physics, Politecnico di Milano, Istituto di Fotonica e Nanotecnologie CNR-IFN, Piazza Leonardo da Vinci 32, 20133 Milano (Italy); Lucchese, R. R. [Department of Chemistry, Texas A and M University, College Station, Texas 77843-3255 (United States)

    2011-11-15

    New extreme-ultraviolet (XUV) light sources such as high-order-harmonic generation (HHG) and free-electron lasers (FELs), combined with laser-induced alignment techniques, enable novel methods for making molecular movies based on measuring molecular frame photoelectron angular distributions. Experiments are presented where CO{sub 2} molecules were impulsively aligned using a near-infrared laser and ionized using femtosecond XUV pulses obtained by HHG. Measured electron angular distributions reveal contributions from four orbitals and the onset of the influence of the molecular structure.

  15. Automatic alignment of radionuclide images

    International Nuclear Information System (INIS)

    Barber, D.C.

    1982-01-01

    The variability of the position, dimensions and orientation of a radionuclide image within the field of view of a gamma camera hampers attempts to analyse the image numerically. This paper describes a method of using a set of training images of a particular type, in this case right lateral brain images, to define the likely variations in the position, dimensions and orientation for that type of image and to provide alignment data for a program that automatically aligns new images of the specified type to a standard position, size and orientation. Examples are given of the use of this method on three types of radionuclide image. (author)

  16. XUV ionization of aligned molecules

    International Nuclear Information System (INIS)

    Kelkensberg, F.; Siu, W.; Gademann, G.; Rouzee, A.; Vrakking, M. J. J.; Johnsson, P.; Lucchini, M.; Lucchese, R. R.

    2011-01-01

    New extreme-ultraviolet (XUV) light sources such as high-order-harmonic generation (HHG) and free-electron lasers (FELs), combined with laser-induced alignment techniques, enable novel methods for making molecular movies based on measuring molecular frame photoelectron angular distributions. Experiments are presented where CO 2 molecules were impulsively aligned using a near-infrared laser and ionized using femtosecond XUV pulses obtained by HHG. Measured electron angular distributions reveal contributions from four orbitals and the onset of the influence of the molecular structure.

  17. Replication and Robustness in Developmental Research

    Science.gov (United States)

    Duncan, Greg J.; Engel, Mimi; Claessens, Amy; Dowsett, Chantelle J.

    2014-01-01

    Replications and robustness checks are key elements of the scientific method and a staple in many disciplines. However, leading journals in developmental psychology rarely include explicit replications of prior research conducted by different investigators, and few require authors to establish in their articles or online appendices that their key…

  18. Three Conceptual Replication Studies in Group Theory

    Science.gov (United States)

    Melhuish, Kathleen

    2018-01-01

    Many studies in mathematics education research occur with a nonrepresentative sample and are never replicated. To challenge this paradigm, I designed a large-scale study evaluating student conceptions in group theory that surveyed a national, representative sample of students. By replicating questions previously used to build theory around student…

  19. Using Replication Projects in Teaching Research Methods

    Science.gov (United States)

    Standing, Lionel G.; Grenier, Manuel; Lane, Erica A.; Roberts, Meigan S.; Sykes, Sarah J.

    2014-01-01

    It is suggested that replication projects may be valuable in teaching research methods, and also address the current need in psychology for more independent verification of published studies. Their use in an undergraduate methods course is described, involving student teams who performed direct replications of four well-known experiments, yielding…

  20. Dynamic behavior of DNA replication domains

    NARCIS (Netherlands)

    Manders, E. M.; Stap, J.; Strackee, J.; van Driel, R.; Aten, J. A.

    1996-01-01

    Like many nuclear processes, DNA replication takes place in distinct domains that are scattered throughout the S-phase nucleus. Recently we have developed a fluorescent double-labeling procedure that allows us to visualize nascent DNA simultaneously with "newborn" DNA that had replicated earlier in

  1. A Replication by Any Other Name: A Systematic Review of Replicative Intervention Studies

    Science.gov (United States)

    Cook, Bryan G.; Collins, Lauren W.; Cook, Sara C.; Cook, Lysandra

    2016-01-01

    Replication research is essential to scientific knowledge. Reviews of replication studies often electronically search for "replicat*" as a textword, which does not identify studies that replicate previous research but do not self-identify as such. We examined whether the 83 intervention studies published in six non-categorical research…

  2. Recommendations for Replication Research in Special Education: A Framework of Systematic, Conceptual Replications

    Science.gov (United States)

    Coyne, Michael D.; Cook, Bryan G.; Therrien, William J.

    2016-01-01

    Special education researchers conduct studies that can be considered replications. However, they do not often refer to them as replication studies. The purpose of this article is to consider the potential benefits of conceptualizing special education intervention research within a framework of systematic, conceptual replication. Specifically, we…

  3. Surface Microstructure Replication in Injection Moulding

    DEFF Research Database (Denmark)

    Hansen, Hans Nørgaard; Arlø, Uffe Rolf

    2005-01-01

    topography is transcribed onto the plastic part through complex mechanisms. This replication however, is not perfect, and the replication quality depends on the plastic material properties, the topography itself, and the process conditions. This paper describes and discusses an investigation of injection...... moulding of surface microstructures. Emphasis is put on the ability to replicate surface microstructures under normal injection moulding conditions, notably with low cost materials at low mould temperatures. The replication of surface microstructures in injection moulding has been explored...... for Polypropylene at low mould temperatures. The process conditions were varied over the recommended process window for the material. The geometry of the obtained structures was analyzed. Evidence suggests that step height replication quality depends linearly on structure width in a certain range. Further...

  4. Surface microstructure replication in injection molding

    DEFF Research Database (Denmark)

    Theilade, Uffe Arlø; Hansen, Hans Nørgaard

    2006-01-01

    topography is transcribed onto the plastic part through complex mechanisms. This replication, however, is not perfect, and the replication quality depends on the plastic material properties, the topography itself, and the process conditions. This paper describes and discusses an investigation of injection...... molding of surface microstructures. The fundamental problem of surface microstructure replication has been studied. The research is based on specific microstructures as found in lab-on-a-chip products and on rough surfaces generated from EDM (electro discharge machining) mold cavities. Emphasis is put...... on the ability to replicate surface microstructures under normal injection-molding conditions, i.e., with commodity materials within typical process windows. It was found that within typical process windows the replication quality depends significantly on several process parameters, and especially the mold...

  5. Rescue from replication stress during mitosis.

    Science.gov (United States)

    Fragkos, Michalis; Naim, Valeria

    2017-04-03

    Genomic instability is a hallmark of cancer and a common feature of human disorders, characterized by growth defects, neurodegeneration, cancer predisposition, and aging. Recent evidence has shown that DNA replication stress is a major driver of genomic instability and tumorigenesis. Cells can undergo mitosis with under-replicated DNA or unresolved DNA structures, and specific pathways are dedicated to resolving these structures during mitosis, suggesting that mitotic rescue from replication stress (MRRS) is a key process influencing genome stability and cellular homeostasis. Deregulation of MRRS following oncogene activation or loss-of-function of caretaker genes may be the cause of chromosomal aberrations that promote cancer initiation and progression. In this review, we discuss the causes and consequences of replication stress, focusing on its persistence in mitosis as well as the mechanisms and factors involved in its resolution, and the potential impact of incomplete replication or aberrant MRRS on tumorigenesis, aging and disease.

  6. Suppression of Poxvirus Replication by Resveratrol.

    Science.gov (United States)

    Cao, Shuai; Realegeno, Susan; Pant, Anil; Satheshkumar, Panayampalli S; Yang, Zhilong

    2017-01-01

    Poxviruses continue to cause serious diseases even after eradication of the historically deadly infectious human disease, smallpox. Poxviruses are currently being developed as vaccine vectors and cancer therapeutic agents. Resveratrol is a natural polyphenol stilbenoid found in plants that has been shown to inhibit or enhance replication of a number of viruses, but the effect of resveratrol on poxvirus replication is unknown. In the present study, we found that resveratrol dramatically suppressed the replication of vaccinia virus (VACV), the prototypic member of poxviruses, in various cell types. Resveratrol also significantly reduced the replication of monkeypox virus, a zoonotic virus that is endemic in Western and Central Africa and causes human mortality. The inhibitory effect of resveratrol on poxviruses is independent of VACV N1 protein, a potential resveratrol binding target. Further experiments demonstrated that resveratrol had little effect on VACV early gene expression, while it suppressed VACV DNA synthesis, and subsequently post-replicative gene expression.

  7. Suppression of Poxvirus Replication by Resveratrol

    Directory of Open Access Journals (Sweden)

    Shuai Cao

    2017-11-01

    Full Text Available Poxviruses continue to cause serious diseases even after eradication of the historically deadly infectious human disease, smallpox. Poxviruses are currently being developed as vaccine vectors and cancer therapeutic agents. Resveratrol is a natural polyphenol stilbenoid found in plants that has been shown to inhibit or enhance replication of a number of viruses, but the effect of resveratrol on poxvirus replication is unknown. In the present study, we found that resveratrol dramatically suppressed the replication of vaccinia virus (VACV, the prototypic member of poxviruses, in various cell types. Resveratrol also significantly reduced the replication of monkeypox virus, a zoonotic virus that is endemic in Western and Central Africa and causes human mortality. The inhibitory effect of resveratrol on poxviruses is independent of VACV N1 protein, a potential resveratrol binding target. Further experiments demonstrated that resveratrol had little effect on VACV early gene expression, while it suppressed VACV DNA synthesis, and subsequently post-replicative gene expression.

  8. A New Replication Norm for Psychology

    Directory of Open Access Journals (Sweden)

    Etienne P LeBel

    2015-10-01

    Full Text Available In recent years, there has been a growing concern regarding the replicability of findings in psychology, including a mounting number of prominent findings that have failed to replicate via high-powered independent replication attempts. In the face of this replicability “crisis of confidence”, several initiatives have been implemented to increase the reliability of empirical findings. In the current article, I propose a new replication norm that aims to further boost the dependability of findings in psychology. Paralleling the extant social norm that researchers should peer review about three times as many articles that they themselves publish per year, the new replication norm states that researchers should aim to independently replicate important findings in their own research areas in proportion to the number of original studies they themselves publish per year (e.g., a 4:1 original-to-replication studies ratio. I argue this simple approach could significantly advance our science by increasing the reliability and cumulative nature of our empirical knowledge base, accelerating our theoretical understanding of psychological phenomena, instilling a focus on quality rather than quantity, and by facilitating our transformation toward a research culture where executing and reporting independent direct replications is viewed as an ordinary part of the research process. To help promote the new norm, I delineate (1 how each of the major constituencies of the research process (i.e., funders, journals, professional societies, departments, and individual researchers can incentivize replications and promote the new norm and (2 any obstacles each constituency faces in supporting the new norm.

  9. Progressive multiple sequence alignments from triplets

    Directory of Open Access Journals (Sweden)

    Stadler Peter F

    2007-07-01

    Full Text Available Abstract Background The quality of progressive sequence alignments strongly depends on the accuracy of the individual pairwise alignment steps since gaps that are introduced at one step cannot be removed at later aggregation steps. Adjacent insertions and deletions necessarily appear in arbitrary order in pairwise alignments and hence form an unavoidable source of errors. Research Here we present a modified variant of progressive sequence alignments that addresses both issues. Instead of pairwise alignments we use exact dynamic programming to align sequence or profile triples. This avoids a large fractions of the ambiguities arising in pairwise alignments. In the subsequent aggregation steps we follow the logic of the Neighbor-Net algorithm, which constructs a phylogenetic network by step-wisely replacing triples by pairs instead of combining pairs to singletons. To this end the three-way alignments are subdivided into two partial alignments, at which stage all-gap columns are naturally removed. This alleviates the "once a gap, always a gap" problem of progressive alignment procedures. Conclusion The three-way Neighbor-Net based alignment program aln3nn is shown to compare favorably on both protein sequences and nucleic acids sequences to other progressive alignment tools. In the latter case one easily can include scoring terms that consider secondary structure features. Overall, the quality of resulting alignments in general exceeds that of clustalw or other multiple alignments tools even though our software does not included heuristics for context dependent (mismatch scores.

  10. Acoustic holography for piston sound radiation with non-uniform velocity profiles

    NARCIS (Netherlands)

    Aarts, R.M.; Janssen, A.J.E.M.

    2010-01-01

    The theory of orthogonal (Zernike) expansions of functions on a disk, as used in the diffraction theory of optical aberrations, is applied to obtain (semi-) analytical results for the radiation of sound due to a non-uniformly moving, baffled, circular piston. For this particular case, a scheme for

  11. CHF multiplier of subcooled flow boiling for non-uniform heating conditions in swirl tube

    International Nuclear Information System (INIS)

    Inasaka, F.; Nariai, H.

    1994-01-01

    The high heat flux components of fusion reactors, such as divertor plates and beam dumps of neutral beam injectors, are estimated to be subjected to very high heat loads more than 10 MW/m 2 . Critical heat flux (CHF), which determines the upper limit of heat removal, is one of the most important problems in designing cooling systems. For practical applications in cooling systems, subcooled flow boiling in water combined with swirl-flow in tubes with internal twisted tape is thought to be the most superior for CHF characteristics in fusion reactor components, heat by irradiation comes in from one side of the wall, and cooling channel is then under circumferentially non-uniform heating condition. Authors have conducted the experiments on the CHF with internal twisted tapes under circumferentially non-uniform heating conditions and showed that when the intensity of non-uniformity increased, q cH (peak heat flux at burnout under nonuniform heating condition) in tube with internal twisted tape increased above the q c,unif (CHF under uniform heating condition), though the average qualities were the same for both cases. They also showed that this CHF enhancement was not seen in smooth tubes without tape under the same average qualities

  12. Magneto-acoustic resonance in a non-uniform current carrying plasma column

    OpenAIRE

    Vaclavik, J.

    2017-01-01

    The forced radial magneto-acoustic oscillations in a plasma column with nonuniform mass density and temperature are investigated. It turns out that the oscillations have a resonant character similar to that of the magneto-acoustic oscillations in a uniform plasma column. The properties of the axial and azimuthal components of the oscillating magnetic field are discussed in detail

  13. Hot deformation behavior and microstructure evolution of TA15 titanium alloy with nonuniform microstructure

    Energy Technology Data Exchange (ETDEWEB)

    Gao, Pengfei; Zhan, Mei, E-mail: zhanmei@nwpu.edu.cn; Fan, Xiaoguang; Lei, Zhenni; Cai, Yang

    2017-03-24

    The flow behavior and microstructure evolution of a near α titanium alloy with nonuniform microstructure during hot deformation were studied by isothermal compression test and electron backscatter diffraction technique. It is found that the nonuniform microstructure prior to deformation consists of equiaxed α, lamellar α in the colony form and β phase, and the α colony keeps the Burgers orientation relationship with β phase. The flow stress of nonuniform microstructure exhibits significant flow softening after reaching the peak stress at a low strain, which is similar to the lamellar microstructure. Nevertheless, the existence of equiaxed α in nonuniform microstructure makes its flow stress and softening rate be lower than the lamellar microstructure. During deformation, the lamellar α undertakes most of the deformation and turns to be rotated, bended and globularized. Moreover, these phenomena exhibit significant heterogeneity due to the orientation dependence of the deformation of lamellar α. The continuous dynamic recrystallization and bending of lamellar α lead to the “fragmentation” during globularization of lamellar α. The bending of lamellar α is speculated as a form of plastic buckling, because the bending of lamellar α almost proceed in the manner of “rigid rotation” and presents opposite bending directions for the adjacent colonies.

  14. Deep convolutional neural networks for dense non-uniform motion deblurring

    CSIR Research Space (South Africa)

    Cronje, J

    2015-11-01

    Full Text Available to form a dense non-uniform motion estimation map. Furthermore, a second CNN is trained to perform deblurring given a blurry image patch and the estimated motion vector. Combining the two trained networks result in a deep learning approach that can enhance...

  15. Pondermotive absorption of a short intense laser pulse in a non-uniform plasma

    Energy Technology Data Exchange (ETDEWEB)

    Andreev, A A; Platonov, K Yu [Inst. for Laser Physics, SC ` Vavilov State Optical Inst.` 12, Birzhevaya line, St Petersburg (Russian Federation); Tanaka, K A

    1998-03-01

    An analytical description of the pondermotive absorption mechanism at a short high intense laser pulse interaction with a strong inhomogeneous plasma is presented. The optimal conditions for the maximum of resonance absorption of laser pulse interaction with non-uniform plasma at normal incidence are founded. (author)

  16. Maximum Likelihood DOA Estimation of Multiple Wideband Sources in the Presence of Nonuniform Sensor Noise

    Directory of Open Access Journals (Sweden)

    K. Yao

    2007-12-01

    Full Text Available We investigate the maximum likelihood (ML direction-of-arrival (DOA estimation of multiple wideband sources in the presence of unknown nonuniform sensor noise. New closed-form expression for the direction estimation Cramér-Rao-Bound (CRB has been derived. The performance of the conventional wideband uniform ML estimator under nonuniform noise has been studied. In order to mitigate the performance degradation caused by the nonuniformity of the noise, a new deterministic wideband nonuniform ML DOA estimator is derived and two associated processing algorithms are proposed. The first algorithm is based on an iterative procedure which stepwise concentrates the log-likelihood function with respect to the DOAs and the noise nuisance parameters, while the second is a noniterative algorithm that maximizes the derived approximately concentrated log-likelihood function. The performance of the proposed algorithms is tested through extensive computer simulations. Simulation results show the stepwise-concentrated ML algorithm (SC-ML requires only a few iterations to converge and both the SC-ML and the approximately-concentrated ML algorithm (AC-ML attain a solution close to the derived CRB at high signal-to-noise ratio.

  17. Dynamic behaviour of non-uniform Bernoulli-Euler beams subjected ...

    African Journals Online (AJOL)

    This paper investigates the dynamics behaviour of non-uniform Bernoulli-Euler beams subjected to concentrated loads ravelling at variable velocities. The solution technique is based on the Generalized Galerkin Method and the use of the generating function of the Bessel function type. The results show that, for all the ...

  18. On The Dynamic Analysis of Non-Uniform Beams Under Uniformly ...

    African Journals Online (AJOL)

    ... the non-uniform continuous beam was replaced by a non-continuous (discrete) system made up of beam elements. The modified elemental and overall stiffness, and mass matrices, the elemental and overall centripetal acceleration matrices as well as the load vector were derived. Next, the Newmark's direct integration ...

  19. Analysis of single blow effectiveness in non-uniform parallel plate regenerators

    DEFF Research Database (Denmark)

    Jensen, Jesper Buch; Bahl, Christian Robert Haffenden; Engelbrecht, Kurt

    2011-01-01

    Non-uniform distributions of plate spacings in parallel plate regenerators have been found to induce loss of performance. In this paper, it has been investigated how variations of three geometric parameters (the aspect ratio, the porosity, and the standard deviation of the plate spacing) affects...

  20. A DSP-based neural network non-uniformity correction algorithm for IRFPA

    Science.gov (United States)

    Liu, Chong-liang; Jin, Wei-qi; Cao, Yang; Liu, Xiu

    2009-07-01

    An effective neural network non-uniformity correction (NUC) algorithm based on DSP is proposed in this paper. The non-uniform response in infrared focal plane array (IRFPA) detectors produces corrupted images with a fixed-pattern noise(FPN).We introduced and analyzed the artificial neural network scene-based non-uniformity correction (SBNUC) algorithm. A design of DSP-based NUC development platform for IRFPA is described. The DSP hardware platform designed is of low power consumption, with 32-bit fixed point DSP TMS320DM643 as the kernel processor. The dependability and expansibility of the software have been improved by DSP/BIOS real-time operating system and Reference Framework 5. In order to realize real-time performance, the calibration parameters update is set at a lower task priority then video input and output in DSP/BIOS. In this way, calibration parameters updating will not affect video streams. The work flow of the system and the strategy of real-time realization are introduced. Experiments on real infrared imaging sequences demonstrate that this algorithm requires only a few frames to obtain high quality corrections. It is computationally efficient and suitable for all kinds of non-uniformity.

  1. Low-frequency electrostatic dust-modes in a non-uniform

    Indian Academy of Sciences (India)

    A self-consistent and general description of obliquely propagating low-frequency electrostatic dust-modes in a non-uniform magnetized dusty plasma system has been presented. A number of different situations, which correspond to different low-frequency electrostatic dust-modes, namely, dust-acoustic mode, dust-drift ...

  2. Sharp lower bounds on the extractable randomness from non-uniform sources

    NARCIS (Netherlands)

    Skoric, B.; Obi, C.; Verbitskiy, E.A.; Schoenmakers, B.

    2011-01-01

    Extraction of uniform randomness from (noisy) non-uniform sources is an important primitive in many security applications, e.g. (pseudo-)random number generators, privacy-preserving biometrics, and key storage based on Physical Unclonable Functions. Generic extraction methods exist, using universal

  3. Physical correction model for automatic correction of intensity non-uniformity in magnetic resonance imaging

    Directory of Open Access Journals (Sweden)

    Stefan Leger

    2017-10-01

    Conclusion: The proposed PCM algorithm led to a significantly improved image quality compared to the originally acquired images, suggesting that it is applicable to the correction of MRI data. Thus it may help to reduce intensity non-uniformity which is an important step for advanced image analysis.

  4. Nonuniform Illumination Correction Algorithm for Underwater Images Using Maximum Likelihood Estimation Method

    Directory of Open Access Journals (Sweden)

    Sonali Sachin Sankpal

    2016-01-01

    Full Text Available Scattering and absorption of light is main reason for limited visibility in water. The suspended particles and dissolved chemical compounds in water are also responsible for scattering and absorption of light in water. The limited visibility in water results in degradation of underwater images. The visibility can be increased by using artificial light source in underwater imaging system. But the artificial light illuminates the scene in a nonuniform fashion. It produces bright spot at the center with the dark region at surroundings. In some cases imaging system itself creates dark region in the image by producing shadow on the objects. The problem of nonuniform illumination is neglected by the researchers in most of the image enhancement techniques of underwater images. Also very few methods are discussed showing the results on color images. This paper suggests a method for nonuniform illumination correction for underwater images. The method assumes that natural underwater images are Rayleigh distributed. This paper used maximum likelihood estimation of scale parameter to map distribution of image to Rayleigh distribution. The method is compared with traditional methods for nonuniform illumination correction using no-reference image quality metrics like average luminance, average information entropy, normalized neighborhood function, average contrast, and comprehensive assessment function.

  5. Scaled nonuniform Fourier transform for image reconstruction in swept source optical coherence tomography

    Science.gov (United States)

    Mezgebo, Biniyam; Nagib, Karim; Fernando, Namal; Kordi, Behzad; Sherif, Sherif

    2018-02-01

    Swept Source optical coherence tomography (SS-OCT) is an important imaging modality for both medical and industrial diagnostic applications. A cross-sectional SS-OCT image is obtained by applying an inverse discrete Fourier transform (DFT) to axial interferograms measured in the frequency domain (k-space). This inverse DFT is typically implemented as a fast Fourier transform (FFT) that requires the data samples to be equidistant in k-space. As the frequency of light produced by a typical wavelength-swept laser is nonlinear in time, the recorded interferogram samples will not be uniformly spaced in k-space. Many image reconstruction methods have been proposed to overcome this problem. Most such methods rely on oversampling the measured interferogram then use either hardware, e.g., Mach-Zhender interferometer as a frequency clock module, or software, e.g., interpolation in k-space, to obtain equally spaced samples that are suitable for the FFT. To overcome the problem of nonuniform sampling in k-space without any need for interferogram oversampling, an earlier method demonstrated the use of the nonuniform discrete Fourier transform (NDFT) for image reconstruction in SS-OCT. In this paper, we present a more accurate method for SS-OCT image reconstruction from nonuniform samples in k-space using a scaled nonuniform Fourier transform. The result is demonstrated using SS-OCT images of Axolotl salamander eggs.

  6. Effects of transverse temperature field nonuniformity on stress in silicon sheet growth

    Science.gov (United States)

    Mataga, P. A.; Hutchinson, J. W.; Chalmers, B.; Bell, R. O.; Kalejs, J. P.

    1987-01-01

    Stress and strain rate distributions are calculated using finite element analysis for steady-state growth of thin silicon sheet temperature nonuniformities imposed in the transverse (sheet width) dimension. Significant reductions in residual stress are predicted to occur for the case where the sheet edge is cooled relative to its center provided plastic deformation with high creep rates is present.

  7. An improved non-uniformity correction algorithm and its GPU parallel implementation

    Science.gov (United States)

    Cheng, Kuanhong; Zhou, Huixin; Qin, Hanlin; Zhao, Dong; Qian, Kun; Rong, Shenghui

    2018-05-01

    The performance of SLP-THP based non-uniformity correction algorithm is seriously affected by the result of SLP filter, which always leads to image blurring and ghosting artifacts. To address this problem, an improved SLP-THP based non-uniformity correction method with curvature constraint was proposed. Here we put forward a new way to estimate spatial low frequency component. First, the details and contours of input image were obtained respectively by minimizing local Gaussian curvature and mean curvature of image surface. Then, the guided filter was utilized to combine these two parts together to get the estimate of spatial low frequency component. Finally, we brought this SLP component into SLP-THP method to achieve non-uniformity correction. The performance of proposed algorithm was verified by several real and simulated infrared image sequences. The experimental results indicated that the proposed algorithm can reduce the non-uniformity without detail losing. After that, a GPU based parallel implementation that runs 150 times faster than CPU was presented, which showed the proposed algorithm has great potential for real time application.

  8. Stress state of thin – walled member of the structure with operation damages under nonuniform loading

    Directory of Open Access Journals (Sweden)

    В.В. Астанін

    2004-01-01

    Full Text Available  The publication is dedicated to determining of stress state in particular the stress concentration factors for thin – walled members of the structures subject to nonuniform tension. A structure member has obtained the operation damage generation by corrosion and other causes.

  9. Numerical analysis of blood flow in realistic arteries subjected to strong non-uniform magnetic fields

    NARCIS (Netherlands)

    Kenjeres, S.

    2008-01-01

    The paper reports on a comprehensive mathematical model for simulations of blood flow under the presence of strong non-uniform magnetic fields. The model consists of a set of Navier–Stokes equations accounting for the Lorentz and magnetisation forces, and a simplified set of Maxwell’s equations

  10. Effect of disjoining pressure in a thin film equation with non-uniform forcing

    KAUST Repository

    MOULTON, D. E.; LEGA, J.

    2013-01-01

    We explore the effect of disjoining pressure on a thin film equation in the presence of a non-uniform body force, motivated by a model describing the reverse draining of a magnetic film. To this end, we use a combination of numerical investigations

  11. Non-uniform approximations for sums of discrete m-dependent random variables

    OpenAIRE

    Vellaisamy, P.; Cekanavicius, V.

    2013-01-01

    Non-uniform estimates are obtained for Poisson, compound Poisson, translated Poisson, negative binomial and binomial approximations to sums of of m-dependent integer-valued random variables. Estimates for Wasserstein metric also follow easily from our results. The results are then exemplified by the approximation of Poisson binomial distribution, 2-runs and $m$-dependent $(k_1,k_2)$-events.

  12. Effect of non-uniform mean flow field on acoustic propagation problems in computational aeroacoustics

    DEFF Research Database (Denmark)

    Si, Haiqing; Shen, Wen Zhong; Zhu, Wei Jun

    2013-01-01

    Acoustic propagation in the presence of a non-uniform mean flow is studied numerically by using two different acoustic propagating models, which solve linearized Euler equations (LEE) and acoustic perturbation equations (APE). As noise induced by turbulent flows often propagates from near field t...

  13. Detection of Uniform and Nonuniform Differential Item Functioning by Item-Focused Trees

    Science.gov (United States)

    Berger, Moritz; Tutz, Gerhard

    2016-01-01

    Detection of differential item functioning (DIF) by use of the logistic modeling approach has a long tradition. One big advantage of the approach is that it can be used to investigate nonuniform (NUDIF) as well as uniform DIF (UDIF). The classical approach allows one to detect DIF by distinguishing between multiple groups. We propose an…

  14. Modelling non-uniform strain distributions in aerospace composites using fibre Bragg gratings

    NARCIS (Netherlands)

    Rajabzadehdizaji, Aydin; Groves, R.M.; Hendriks, R.C.; Heusdens, R.; Chung, Y.; Jin, W.; Lee, B.; Canning, J.; Nakamura, K.; Yuan, L.

    2017-01-01

    In this paper the behaviour of fibre Bragg grating (FBG) sensors under non-uniform strain distributions was analysed. Using the fundamental matrix approach, the length of the FBG sensor was discretised, with each segment undergoing different strain values. FBG sensors that are embedded inside

  15. Critical opalescence of neutrons in nonuniform liquid in the gravitational field

    International Nuclear Information System (INIS)

    Sugakov, V.I.; Chalyj, A.V.; Chernenko, L.M.

    1990-01-01

    The altitude dependence of the refractive index and refractive angle of the neutron beam in a nonuniform liquid near the critical point is investigated. The neutron wave function in a passing beam as well as monochromatic transmission and reflection coefficients of neutrons are found

  16. Modeling of parallel-plate regenerators with non-uniform plate distributions

    DEFF Research Database (Denmark)

    Jensen, Jesper Buch; Engelbrecht, Kurt; Bahl, Christian Robert Haffenden

    2010-01-01

    plate spacing distributions are presented in order to understand the impact of spacing non-uniformity. Simulations of more realistic distributions where the plate spacings follow normal distributions are then discussed in order to describe the deviation of the performance of a regenerator relative...

  17. A Single Image Deblurring Algorithm for Nonuniform Motion Blur Using Uniform Defocus Map Estimation

    Directory of Open Access Journals (Sweden)

    Chia-Feng Chang

    2017-01-01

    Full Text Available One of the most common artifacts in digital photography is motion blur. When capturing an image under dim light by using a handheld camera, the tendency of the photographer’s hand to shake causes the image to blur. In response to this problem, image deblurring has become an active topic in computational photography and image processing in recent years. From the view of signal processing, image deblurring can be reduced to a deconvolution problem if the kernel function of the motion blur is assumed to be shift invariant. However, the kernel function is not always shift invariant in real cases; for example, in-plane rotation of a camera or a moving object can blur different parts of an image according to different kernel functions. An image that is degraded by multiple blur kernels is called a nonuniform blur image. In this paper, we propose a novel single image deblurring algorithm for nonuniform motion blur images that is blurred by moving object. First, a proposed uniform defocus map method is presented for measurement of the amounts and directions of motion blur. These blurred regions are then used to estimate point spread functions simultaneously. Finally, a fast deconvolution algorithm is used to restore the nonuniform blur image. We expect that the proposed method can achieve satisfactory deblurring of a single nonuniform blur image.

  18. Below-threshold harmonic generation from strong non-uniform fields

    Science.gov (United States)

    Yavuz, I.

    2017-10-01

    Strong-field photoemission below the ionization threshold is a rich/complex region where atomic emission and harmonic generation may coexist. We studied the mechanism of below-threshold harmonics (BTH) from spatially non-uniform local fields near the metallic nanostructures. Discrete harmonics are generated due to the broken inversion symmetry, suggesting enriched coherent emission in the vuv frequency range. Through the numerical solution of the time-dependent Schrödinger equation, we investigate wavelength and intensity dependence of BTH. Wavelength dependence identifies counter-regular resonances; individual contributions from the multi-photon emission and channel-closing effects due to quantum path interferences. In order to understand the underlying mechanism of BTH, we devised a generalized semi-classical model, including the influence of Coulomb and non-uniform field interactions. As in uniform fields, Coulomb potential in non-uniform fields is the determinant of BTH; we observed that the generation of BTH are due to returning trajectories with negative energies. Due to large distance effectiveness of the non-uniformity, only long trajectories are noticeably affected.

  19. New fundamental insights into capacitance modeling of laterally nonuniform MOS devices

    NARCIS (Netherlands)

    Aarts, A.C.T.; Hout, van der R.; Paasschens, J.C.J.; Scholten, A.J.; Willemsen, M.B.; Klaassen, D.B.M.

    2006-01-01

    In compact transistor modeling for circuit simulation, the capacitances of conventional MOS devices are commonly determined as the derivatives of terminal charges, which in their turn are obtained from the so-called Ward-Dutton charge partitioning scheme. For devices with a laterally nonuniform

  20. A Method of Sky Ripple Residual Nonuniformity Reduction for a Cooled Infrared Imager and Hardware Implementation.

    Science.gov (United States)

    Li, Yiyang; Jin, Weiqi; Li, Shuo; Zhang, Xu; Zhu, Jin

    2017-05-08

    Cooled infrared detector arrays always suffer from undesired ripple residual nonuniformity (RNU) in sky scene observations. The ripple residual nonuniformity seriously affects the imaging quality, especially for small target detection. It is difficult to eliminate it using the calibration-based techniques and the current scene-based nonuniformity algorithms. In this paper, we present a modified temporal high-pass nonuniformity correction algorithm using fuzzy scene classification. The fuzzy scene classification is designed to control the correction threshold so that the algorithm can remove ripple RNU without degrading the scene details. We test the algorithm on a real infrared sequence by comparing it to several well-established methods. The result shows that the algorithm has obvious advantages compared with the tested methods in terms of detail conservation and convergence speed for ripple RNU correction. Furthermore, we display our architecture with a prototype built on a Xilinx Virtex-5 XC5VLX50T field-programmable gate array (FPGA), which has two advantages: (1) low resources consumption; and (2) small hardware delay (less than 10 image rows). It has been successfully applied in an actual system.

  1. A discriminative model-constrained EM approach to 3D MRI brain tissue classification and intensity non-uniformity correction

    International Nuclear Information System (INIS)

    Wels, Michael; Hornegger, Joachim; Zheng Yefeng; Comaniciu, Dorin; Huber, Martin

    2011-01-01

    We describe a fully automated method for tissue classification, which is the segmentation into cerebral gray matter (GM), cerebral white matter (WM), and cerebral spinal fluid (CSF), and intensity non-uniformity (INU) correction in brain magnetic resonance imaging (MRI) volumes. It combines supervised MRI modality-specific discriminative modeling and unsupervised statistical expectation maximization (EM) segmentation into an integrated Bayesian framework. While both the parametric observation models and the non-parametrically modeled INUs are estimated via EM during segmentation itself, a Markov random field (MRF) prior model regularizes segmentation and parameter estimation. Firstly, the regularization takes into account knowledge about spatial and appearance-related homogeneity of segments in terms of pairwise clique potentials of adjacent voxels. Secondly and more importantly, patient-specific knowledge about the global spatial distribution of brain tissue is incorporated into the segmentation process via unary clique potentials. They are based on a strong discriminative model provided by a probabilistic boosting tree (PBT) for classifying image voxels. It relies on the surrounding context and alignment-based features derived from a probabilistic anatomical atlas. The context considered is encoded by 3D Haar-like features of reduced INU sensitivity. Alignment is carried out fully automatically by means of an affine registration algorithm minimizing cross-correlation. Both types of features do not immediately use the observed intensities provided by the MRI modality but instead rely on specifically transformed features, which are less sensitive to MRI artifacts. Detailed quantitative evaluations on standard phantom scans and standard real-world data show the accuracy and robustness of the proposed method. They also demonstrate relative superiority in comparison to other state-of-the-art approaches to this kind of computational task: our method achieves average

  2. Alignment of diabetic feet images

    NARCIS (Netherlands)

    Klein, Almar; van der Heijden, Ferdinand; Slump, Cornelis H.; Uyl, M.J.; Philips, W.

    2007-01-01

    This paper addresses the problem of aligning the images of feet taken at different instances in time. We propose to use SIFT keypoints to find the geometric deformation between two photo’s. We then have a set of landmarks for each image. By finding the corresponding landmarks (i.e. matching the

  3. Aligning Assessments for COSMA Accreditation

    Science.gov (United States)

    Laird, Curt; Johnson, Dennis A.; Alderman, Heather

    2015-01-01

    Many higher education sport management programs are currently in the process of seeking accreditation from the Commission on Sport Management Accreditation (COSMA). This article provides a best-practice method for aligning student learning outcomes with a sport management program's mission and goals. Formative and summative assessment procedures…

  4. Enhancing Teaching through Constructive Alignment.

    Science.gov (United States)

    Biggs, John

    1996-01-01

    An approach to college-level instructional design that incorporates the principles of constructivism, termed "constructive alignment," is described. The process is then illustrated with reference to a professional development unit in educational psychology for teachers, but the model is viewed as generalizable to most units or programs in higher…

  5. Global alignment algorithms implementations | Fatumo ...

    African Journals Online (AJOL)

    In this paper, we implemented the two routes for sequence comparison, that is; the dotplot and Needleman-wunsch algorithm for global sequence alignment. Our algorithms were implemented in python programming language and were tested on Linux platform 1.60GHz, 512 MB of RAM SUSE 9.2 and 10.1 versions.

  6. Aligned Layers of Silver Nano-Fibers

    Directory of Open Access Journals (Sweden)

    Andrii B. Golovin

    2012-02-01

    Full Text Available We describe a new dichroic polarizers made by ordering silver nano-fibers to aligned layers. The aligned layers consist of nano-fibers and self-assembled molecular aggregates of lyotropic liquid crystals. Unidirectional alignment of the layers is achieved by means of mechanical shearing. Aligned layers of silver nano-fibers are partially transparent to a linearly polarized electromagnetic radiation. The unidirectional alignment and density of the silver nano-fibers determine degree of polarization of transmitted light. The aligned layers of silver nano-fibers might be used in optics, microwave applications, and organic electronics.

  7. Data from Investigating Variation in Replicability: A “Many Labs” Replication Project

    Directory of Open Access Journals (Sweden)

    Richard A. Klein

    2014-04-01

    Full Text Available This dataset is from the Many Labs Replication Project in which 13 effects were replicated across 36 samples and over 6,000 participants. Data from the replications are included, along with demographic variables about the participants and contextual information about the environment in which the replication was conducted. Data were collected in-lab and online through a standardized procedure administered via an online link. The dataset is stored on the Open Science Framework website. These data could be used to further investigate the results of the included 13 effects or to study replication and generalizability more broadly.

  8. Targeting DNA Replication Stress for Cancer Therapy

    Directory of Open Access Journals (Sweden)

    Jun Zhang

    2016-08-01

    Full Text Available The human cellular genome is under constant stress from extrinsic and intrinsic factors, which can lead to DNA damage and defective replication. In normal cells, DNA damage response (DDR mediated by various checkpoints will either activate the DNA repair system or induce cellular apoptosis/senescence, therefore maintaining overall genomic integrity. Cancer cells, however, due to constitutive growth signaling and defective DDR, may exhibit “replication stress” —a phenomenon unique to cancer cells that is described as the perturbation of error-free DNA replication and slow-down of DNA synthesis. Although replication stress has been proven to induce genomic instability and tumorigenesis, recent studies have counterintuitively shown that enhancing replicative stress through further loosening of the remaining checkpoints in cancer cells to induce their catastrophic failure of proliferation may provide an alternative therapeutic approach. In this review, we discuss the rationale to enhance replicative stress in cancer cells, past approaches using traditional radiation and chemotherapy, and emerging approaches targeting the signaling cascades induced by DNA damage. We also summarize current clinical trials exploring these strategies and propose future research directions including the use of combination therapies, and the identification of potential new targets and biomarkers to track and predict treatment responses to targeting DNA replication stress.

  9. Factors influencing microinjection molding replication quality

    Science.gov (United States)

    Vera, Julie; Brulez, Anne-Catherine; Contraires, Elise; Larochette, Mathieu; Trannoy-Orban, Nathalie; Pignon, Maxime; Mauclair, Cyril; Valette, Stéphane; Benayoun, Stéphane

    2018-01-01

    In recent years, there has been increased interest in producing and providing high-precision plastic parts that can be manufactured by microinjection molding: gears, pumps, optical grating elements, and so on. For all of these applications, the replication quality is essential. This study has two goals: (1) fabrication of high-precision parts using the conventional injection molding machine; (2) identification of robust parameters that ensure production quality. Thus, different technological solutions have been used: cavity vacuuming and the use of a mold coated with DLC or CrN deposits. AFM and SEM analyses were carried out to characterize the replication profile. The replication quality was studied in terms of the process parameters, coated and uncoated molds and crystallinity of the polymer. Specific studies were processed to quantify the replicability of injection molded parts (ABS, PC and PP). Analysis of the Taguchi experimental designs permits prioritization of the impact of each parameter on the replication quality. A discussion taking into account these new parameters and the thermal and spreading properties on the coatings is proposed. It appeared that, in general, increasing the mold temperature improves the molten polymer fill in submicron features except for the steel insert (for which the presence of a vacuum is the most important factor). Moreover, the DLC coating was the best coating to increase the quality of the replication. This result could be explained by the lower thermal diffusivity of this coating. We noted that the viscosity of the polymers is not a primordial factor of the replication quality.

  10. The Inherent Asymmetry of DNA Replication.

    Science.gov (United States)

    Snedeker, Jonathan; Wooten, Matthew; Chen, Xin

    2017-10-06

    Semiconservative DNA replication has provided an elegant solution to the fundamental problem of how life is able to proliferate in a way that allows cells, organisms, and populations to survive and replicate many times over. Somewhat lost, however, in our admiration for this mechanism is an appreciation for the asymmetries that occur in the process of DNA replication. As we discuss in this review, these asymmetries arise as a consequence of the structure of the DNA molecule and the enzymatic mechanism of DNA synthesis. Increasing evidence suggests that asymmetries in DNA replication are able to play a central role in the processes of adaptation and evolution by shaping the mutagenic landscape of cells. Additionally, in eukaryotes, recent work has demonstrated that the inherent asymmetries in DNA replication may play an important role in the process of chromatin replication. As chromatin plays an essential role in defining cell identity, asymmetries generated during the process of DNA replication may play critical roles in cell fate decisions related to patterning and development.

  11. Ultrastructural Characterization of Zika Virus Replication Factories

    Directory of Open Access Journals (Sweden)

    Mirko Cortese

    2017-02-01

    Full Text Available Summary: A global concern has emerged with the pandemic spread of Zika virus (ZIKV infections that can cause severe neurological symptoms in adults and newborns. ZIKV is a positive-strand RNA virus replicating in virus-induced membranous replication factories (RFs. Here we used various imaging techniques to investigate the ultrastructural details of ZIKV RFs and their relationship with host cell organelles. Analyses of human hepatic cells and neural progenitor cells infected with ZIKV revealed endoplasmic reticulum (ER membrane invaginations containing pore-like openings toward the cytosol, reminiscent to RFs in Dengue virus-infected cells. Both the MR766 African strain and the H/PF/2013 Asian strain, the latter linked to neurological diseases, induce RFs of similar architecture. Importantly, ZIKV infection causes a drastic reorganization of microtubules and intermediate filaments forming cage-like structures surrounding the viral RF. Consistently, ZIKV replication is suppressed by cytoskeleton-targeting drugs. Thus, ZIKV RFs are tightly linked to rearrangements of the host cell cytoskeleton. : Cortese et al. show that ZIKV infection in both human hepatoma and neuronal progenitor cells induces drastic structural modification of the cellular architecture. Microtubules and intermediate filaments surround the viral replication factory composed of vesicles corresponding to ER membrane invagination toward the ER lumen. Importantly, alteration of microtubule flexibility impairs ZIKV replication. Keywords: Zika virus, flavivirus, human neural progenitor cells, replication factories, replication organelles, microtubules, intermediate filaments, electron microscopy, electron tomography, live-cell imaging

  12. Ancestral sequence alignment under optimal conditions

    Directory of Open Access Journals (Sweden)

    Brown Daniel G

    2005-11-01

    Full Text Available Abstract Background Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multiple alignments. Many popular alignment algorithms for DNA use the sum-of-pairs heuristic, where the score of a multiple alignment is the sum of its induced pairwise alignment scores. However, the biological meaning of the sum-of-pairs of pairs heuristic is not obvious. Additionally, many algorithms based on the sum-of-pairs heuristic are complicated and slow, compared to pairwise alignment algorithms. An alternative approach to aligning alignments is to first infer ancestral sequences for each alignment, and then align the two ancestral sequences. In addition to being fast, this method has a clear biological basis that takes into account the evolution implied by an underlying phylogenetic tree. In this study we explore the accuracy of aligning alignments by ancestral sequence alignment. We examine the use of both maximum likelihood and parsimony to infer ancestral sequences. Additionally, we investigate the effect on accuracy of allowing ambiguity in our ancestral sequences. Results We use synthetic sequence data that we generate by simulating evolution on a phylogenetic tree. We use two different types of phylogenetic trees: trees with a period of rapid growth followed by a period of slow growth, and trees with a period of slow growth followed by a period of rapid growth. We examine the alignment accuracy of four ancestral sequence reconstruction and alignment methods: parsimony, maximum likelihood, ambiguous parsimony, and ambiguous maximum likelihood. Additionally, we compare against the alignment accuracy of two sum-of-pairs algorithms: ClustalW and the heuristic of Ma, Zhang, and Wang. Conclusion We find that allowing ambiguity in ancestral sequences does not lead to better multiple alignments. Regardless of whether we use parsimony or maximum likelihood, the

  13. ALIGNMENT OF PROTOSTARS AND CIRCUMSTELLAR DISKS DURING THE EMBEDDED PHASE

    International Nuclear Information System (INIS)

    Spalding, Christopher; Batygin, Konstantin; Adams, Fred C.

    2014-01-01

    Star formation proceeds via the collapse of a molecular cloud core over multiple dynamical timescales. Turbulence within cores results in a spatially non-uniform angular momentum of the cloud, causing a stochastic variation in the orientation of the disk forming from the collapsing material. In the absence of star-disk angular momentum coupling, such disk-tilting would provide a natural mechanism for the production of primordial spin-orbit misalignments in the resulting planetary systems. However, owing to high accretion rates in the embedded phase of star formation, the inner edge of the circumstellar disk extends down to the stellar surface, resulting in efficient gravitational and accretional angular momentum transfer between the star and the disk. Here, we demonstrate that the resulting gravitational coupling is sufficient to suppress any significant star-disk misalignment, with accretion playing a secondary role. The joint tilting of the star-disk system leads to a stochastic wandering of star-aligned bipolar outflows. Such wandering widens the effective opening angle of stellar outflows, allowing for more efficient clearing of the remainder of the protostar's gaseous envelope. Accordingly, the processes described in this work provide an additional mechanism responsible for sculpting the stellar initial mass function

  14. MYC and the Control of DNA Replication

    Science.gov (United States)

    Dominguez-Sola, David; Gautier, Jean

    2014-01-01

    The MYC oncogene is a multifunctional protein that is aberrantly expressed in a significant fraction of tumors from diverse tissue origins. Because of its multifunctional nature, it has been difficult to delineate the exact contributions of MYC’s diverse roles to tumorigenesis. Here, we review the normal role of MYC in regulating DNA replication as well as its ability to generate DNA replication stress when overexpressed. Finally, we discuss the possible mechanisms by which replication stress induced by aberrant MYC expression could contribute to genomic instability and cancer. PMID:24890833

  15. Replicated Data Management for Mobile Computing

    CERN Document Server

    Douglas, Terry

    2008-01-01

    Managing data in a mobile computing environment invariably involves caching or replication. In many cases, a mobile device has access only to data that is stored locally, and much of that data arrives via replication from other devices, PCs, and services. Given portable devices with limited resources, weak or intermittent connectivity, and security vulnerabilities, data replication serves to increase availability, reduce communication costs, foster sharing, and enhance survivability of critical information. Mobile systems have employed a variety of distributed architectures from client-server

  16. GraphAlignment: Bayesian pairwise alignment of biological networks

    Czech Academy of Sciences Publication Activity Database

    Kolář, Michal; Meier, J.; Mustonen, V.; Lässig, M.; Berg, J.

    2012-01-01

    Roč. 6, November 21 (2012) ISSN 1752-0509 Grant - others:Deutsche Forschungsgemeinschaft(DE) SFB 680; Deutsche Forschungsgemeinschaft(DE) SFB-TR12; Deutsche Forschungsgemeinschaft(DE) BE 2478/2-1 Institutional research plan: CEZ:AV0Z50520514 Keywords : Graph alignment * Biological networks * Parameter estimation * Bioconductor Subject RIV: EB - Genetics ; Molecular Biology Impact factor: 2.982, year: 2012

  17. Nanoscratch technique for aligning multiwalled carbon nanotubes ...

    Indian Academy of Sciences (India)

    Carbon nanotube; arc discharge; characterization; alignment; nanoscratch. 1. Introduction ... During arc discharge, when the gap between the electrodes is ∼ 1 mm, ..... increase in the D band intensity in the aligned region may not be possibly ...

  18. Replication of micro and nano-features on iPP by injection molding with fast cavity surface temperature evolution

    DEFF Research Database (Denmark)

    Speranzaa, Vito; Liparotia, Sara; Calaon, Matteo

    2017-01-01

    The production of polymeric components with functional structures in the micrometer and sub-micrometer range is a complex challenge for the injection molding process, since it suffers the use of low cavity surface temperatures that induce the fast formation of a frozen layer, thus preventing...... was sufficient to obtain accurate replication, with adequate surface temperatures. In the case of nano-features, the replication accuracy was affected by the morphology developed on the molding surface, that is aligned along the flow direction with dimensions comparable with the dimension of the nano...

  19. What Should Researchers Expect When They Replicate Studies? A Statistical View of Replicability in Psychological Science.

    Science.gov (United States)

    Patil, Prasad; Peng, Roger D; Leek, Jeffrey T

    2016-07-01

    A recent study of the replicability of key psychological findings is a major contribution toward understanding the human side of the scientific process. Despite the careful and nuanced analysis reported, the simple narrative disseminated by the mass, social, and scientific media was that in only 36% of the studies were the original results replicated. In the current study, however, we showed that 77% of the replication effect sizes reported were within a 95% prediction interval calculated using the original effect size. Our analysis suggests two critical issues in understanding replication of psychological studies. First, researchers' intuitive expectations for what a replication should show do not always match with statistical estimates of replication. Second, when the results of original studies are very imprecise, they create wide prediction intervals-and a broad range of replication effects that are consistent with the original estimates. This may lead to effects that replicate successfully, in that replication results are consistent with statistical expectations, but do not provide much information about the size (or existence) of the true effect. In this light, the results of the Reproducibility Project: Psychology can be viewed as statistically consistent with what one might expect when performing a large-scale replication experiment. © The Author(s) 2016.

  20. Mapping replication origins in yeast chromosomes.

    Science.gov (United States)

    Brewer, B J; Fangman, W L

    1991-07-01

    The replicon hypothesis, first proposed in 1963 by Jacob and Brenner, states that DNA replication is controlled at sites called origins. Replication origins have been well studied in prokaryotes. However, the study of eukaryotic chromosomal origins has lagged behind, because until recently there has been no method for reliably determining the identity and location of origins from eukaryotic chromosomes. Here, we review a technique we developed with the yeast Saccharomyces cerevisiae that allows both the mapping of replication origins and an assessment of their activity. Two-dimensional agarose gel electrophoresis and Southern hybridization with total genomic DNA are used to determine whether a particular restriction fragment acquires the branched structure diagnostic of replication initiation. The technique has been used to localize origins in yeast chromosomes and assess their initiation efficiency. In some cases, origin activation is dependent upon the surrounding context. The technique is also being applied to a variety of eukaryotic organisms.

  1. Advancing Polymerase Ribozymes Towards Self-Replication

    Science.gov (United States)

    Tjhung, K. F.; Joyce, G. F.

    2017-07-01

    Autocatalytic replication and evolution in vitro by (i) a cross-chiral RNA polymerase catalyzing polymerization of mononucleotides of the opposite handedness; (ii) non-covalent assembly of component fragments of an existing RNA polymerase ribozyme.

  2. Initiation of Replication in Escherichia coli

    DEFF Research Database (Denmark)

    Frimodt-Møller, Jakob

    The circular chromosome of Escherichia coli is replicated by two replisomes assembled at the unique origin and moving in the opposite direction until they meet in the less well defined terminus. The key protein in initiation of replication, DnaA, facilitates the unwinding of double-stranded DNA...... to single-stranded DNA in oriC. Although DnaA is able to bind both ADP and ATP, DnaA is only active in initiation when bound to ATP. Although initiation of replication, and the regulation of this, is thoroughly investigated it is still not fully understood. The overall aim of the thesis was to investigate...... the regulation of initiation, the effect on the cell when regulation fails, and if regulation was interlinked to chromosomal organization. This thesis uncovers that there exists a subtle balance between chromosome replication and reactive oxygen species (ROS) inflicted DNA damage. Thus, failure in regulation...

  3. LHCb Data Replication During SC3

    CERN Multimedia

    Smith, A

    2006-01-01

    LHCb's participation in LCG's Service Challenge 3 involves testing the bulk data transfer infrastructure developed to allow high bandwidth distribution of data across the grid in accordance with the computing model. To enable reliable bulk replication of data, LHCb's DIRAC system has been integrated with gLite's File Transfer Service middleware component to make use of dedicated network links between LHCb computing centres. DIRAC's Data Management tools previously allowed the replication, registration and deletion of files on the grid. For SC3 supplementary functionality has been added to allow bulk replication of data (using FTS) and efficient mass registration to the LFC replica catalog.Provisional performance results have shown that the system developed can meet the expected data replication rate required by the computing model in 2007. This paper details the experience and results of integration and utilisation of DIRAC with the SC3 transfer machinery.

  4. Molecular Mechanisms of DNA Replication Checkpoint Activation

    Directory of Open Access Journals (Sweden)

    Bénédicte Recolin

    2014-03-01

    Full Text Available The major challenge of the cell cycle is to deliver an intact, and fully duplicated, genetic material to the daughter cells. To this end, progression of DNA synthesis is monitored by a feedback mechanism known as replication checkpoint that is untimely linked to DNA replication. This signaling pathway ensures coordination of DNA synthesis with cell cycle progression. Failure to activate this checkpoint in response to perturbation of DNA synthesis (replication stress results in forced cell division leading to chromosome fragmentation, aneuploidy, and genomic instability. In this review, we will describe current knowledge of the molecular determinants of the DNA replication checkpoint in eukaryotic cells and discuss a model of activation of this signaling pathway crucial for maintenance of genomic stability.

  5. Locating Nearby Copies of Replicated Internet Servers

    National Research Council Canada - National Science Library

    Guyton, James D; Schwartz, Michael F

    1995-01-01

    In this paper we consider the problem of choosing among a collection of replicated servers focusing on the question of how to make choices that segregate client/server traffic according to network topology...

  6. Assessing strategic alignment to improve IT effectiveness

    NARCIS (Netherlands)

    Smits, M.T.; Fairchild, A.M.; Ribbers, P.M.A.; Milis, K.; van Geel, E.; Markus, M.L.; Hampe, J.F.; Gricar, J.; Pucihar, A.; Lenart, G.

    2009-01-01

    A long running challenge in both large and small organizations has been aligning information systems services with business needs. Good alignment is assumed to lead to good business results, but there is a need for good instruments to assess strategic alignment and business success in practice.

  7. Physician-Hospital Alignment in Orthopedic Surgery.

    Science.gov (United States)

    Bushnell, Brandon D

    2015-09-01

    The concept of "alignment" between physicians and hospitals is a popular buzzword in the age of health care reform. Despite their often tumultuous histories, physicians and hospitals find themselves under increasing pressures to work together toward common goals. However, effective alignment is more than just simple cooperation between parties. The process of achieving alignment does not have simple, universal steps. Alignment will differ based on individual situational factors and the type of specialty involved. Ultimately, however, there are principles that underlie the concept of alignment and should be a part of any physician-hospital alignment efforts. In orthopedic surgery, alignment involves the clinical, administrative, financial, and even personal aspects of a surgeon's practice. It must be based on the principles of financial interest, clinical authority, administrative participation, transparency, focus on the patient, and mutual necessity. Alignment can take on various forms as well, with popular models consisting of shared governance and comanagement, gainsharing, bundled payments, accountable care organizations, and other methods. As regulatory and financial pressures continue to motivate physicians and hospitals to develop alignment relationships, new and innovative methods of alignment will also appear. Existing models will mature and evolve, with individual variability based on local factors. However, certain trends seem to be appearing as time progresses and alignment relationships deepen, including regional and national collaboration, population management, and changes in the legal system. This article explores the history, principles, and specific methods of physician-hospital alignment and its critical importance for the future of health care delivery. Copyright 2015, SLACK Incorporated.

  8. Curricular Alignment: A Re-examination.

    Science.gov (United States)

    Anderson, Lorin W.

    2002-01-01

    Examines key differences among content coverage, opportunity to learn, and curriculum alignment, suggesting that the revised Taxonomy provides a framework for analyzing curriculum alignment and illustrating how the Taxonomy Table can be used to estimate curriculum alignment. The paper notes that the revised Taxonomy enables educators to probe…

  9. Surface Micro Topography Replication in Injection Moulding

    DEFF Research Database (Denmark)

    Arlø, Uffe Rolf; Hansen, Hans Nørgaard; Kjær, Erik Michael

    2005-01-01

    The surface micro topography of injection moulded plastic parts can be important for aesthetical and technical reasons. The quality of replication of mould surface topography onto the plastic surface depends among other factors on the process conditions. A study of this relationship has been...... carried out with rough EDM (electrical discharge machining) mould surfaces, a PS grade, and by applying established three-dimensional topography parameters. Significant quantitative relationships between process parameters and topography parameters were established. It further appeared that replication...

  10. The Legal Road To Replicating Silicon Valley

    OpenAIRE

    John Armour; Douglas Cumming

    2004-01-01

    Must policymakers seeking to replicate the success of Silicon Valley’s venture capital market first replicate other US institutions, such as deep and liquid stock markets? Or can legal reforms alone make a significant difference? In this paper, we compare the economic and legal determinants of venture capital investment, fundraising and exits. We introduce a cross-sectional and time series empirical analysis across 15 countries and 13 years of data spanning an entire business cycle. We show t...

  11. Evolution of Database Replication Technologies for WLCG

    OpenAIRE

    Baranowski, Zbigniew; Pardavila, Lorena Lobato; Blaszczyk, Marcin; Dimitrov, Gancho; Canali, Luca

    2015-01-01

    In this article we summarize several years of experience on database replication technologies used at WLCG and we provide a short review of the available Oracle technologies and their key characteristics. One of the notable changes and improvement in this area in recent past has been the introduction of Oracle GoldenGate as a replacement of Oracle Streams. We report in this article on the preparation and later upgrades for remote replication done in collaboration with ATLAS and Tier 1 databas...

  12. Alignment of the VISA Undulator

    International Nuclear Information System (INIS)

    Ruland, Robert E.

    2000-01-01

    As part of the R and D program towards a fourth generation light source, a Self-Amplified Spontaneous Emission (SASE) demonstration is being prepared. The Visible-Infrared SASE Amplifier (VISA) undulator is being installed at Brookhaven National Laboratory. The VISA undulator is an in-vacuum, 4-meter long, 1.8 cm period, pure-permanent magnet device, with a novel, strong focusing, permanent magnet FODO array included within the fixed, 6 mm undulator gap. The undulator is constructed of 99 cm long segments. To attain maximum SASE gain requires establishing overlap of electron and photon beams to within 50 pm rms. This imposes challenging tolerances on mechanical fabrication and magnetic field quality, and necessitates use of laser straightness interferometry for calibration and alignment of the magnetic axes of the undulator segments. This paper describes the magnetic centerline determination, and the fiducialization and alignment processes, which were performed to meet the tolerance goal

  13. Position list word aligned hybrid

    DEFF Research Database (Denmark)

    Deliege, Francois; Pedersen, Torben Bach

    2010-01-01

    Compressed bitmap indexes are increasingly used for efficiently querying very large and complex databases. The Word Aligned Hybrid (WAH) bitmap compression scheme is commonly recognized as the most efficient compression scheme in terms of CPU efficiency. However, WAH compressed bitmaps use a lot...... of storage space. This paper presents the Position List Word Aligned Hybrid (PLWAH) compression scheme that improves significantly over WAH compression by better utilizing the available bits and new CPU instructions. For typical bit distributions, PLWAH compressed bitmaps are often half the size of WAH...... bitmaps and, at the same time, offer an even better CPU efficiency. The results are verified by theoretical estimates and extensive experiments on large amounts of both synthetic and real-world data....

  14. Investigation of Non-Uniform Rust Distribution and Its Effects on Corrosion Induced Cracking in Reinforced Concrete

    Directory of Open Access Journals (Sweden)

    Sutrisno Wahyuniarsih

    2017-01-01

    Full Text Available Uniform corrosion still widely used by a lot of researchers and engineers to analyze the corrosion induced cracking. However, in practice, corrosion process occurred non-uniformly. The part nearest to the exposed surface is more likely to have faster corrosion initiation compared with other regions. This research is mainly focused on investigating the effect of non-uniform rust distribution to cover cracking in reinforced concrete. An experimental test performed using accelerated corrosion test by using 5% NaCl solution and applied a constant electric current to the concrete samples. The rust distribution and measurement were observed by using a digital microscope. Based on the experimental result, it was found that the rust was distributed in a non-uniform pattern. As a result, the cracks also formed non-uniformly along the perimeter of steel bar. At the last part of this paper, a simulation result of concrete cracking induced by non-uniform corrosion is presented. The result compared with a simulation using uniform corrosion assumption to investigate the damage pattern of each model. The simulation result reveals stress evolution due to rust expansion which leads to concrete cracking. Furthermore, a comparison of stresses induced by non-uniform corrosion and uniform corrosion indicates that non-uniform corrosion could lead to earlier damage to the structure which is specified by the formation and propagation of the crack.

  15. Modes of DNA repair and replication

    International Nuclear Information System (INIS)

    Hanawalt, P.; Kondo, S.

    1979-01-01

    Modes of DNA repair and replication require close coordination as well as some overlap of enzyme functions. Some classes of recovery deficient mutants may have defects in replication rather than repair modes. Lesions such as the pyrimidine dimers produced by ultraviolet light irradiation are the blocks to normal DNA replication in vivo and in vitro. The DNA synthesis by the DNA polymerase 1 of E. coli is blocked at one nucleotide away from the dimerized pyrimidines in template strands. Thus, some DNA polymerases seem to be unable to incorporate nucleotides opposite to the non-pairing lesions in template DNA strands. The lesions in template DNA strands may block the sequential addition of nucleotides in the synthesis of daughter strands. Normal replication utilizes a constitutive ''error-free'' mode that copies DNA templates with high fidelity, but which may be totally blocked at a lesion that obscures the appropriate base pairing specificity. It might be expected that modified replication system exhibits generally high error frequency. The error rate of DNA polymerases may be controlled by the degree of phosphorylation of the enzyme. Inducible SOS system is controlled by recA genes that also control the pathways for recombination. It is possible that SOS system involves some process other than the modification of a blocked replication apparatus to permit error-prone transdimer synthesis. (Yamashita, S.)

  16. Replication and robustness in developmental research.

    Science.gov (United States)

    Duncan, Greg J; Engel, Mimi; Claessens, Amy; Dowsett, Chantelle J

    2014-11-01

    Replications and robustness checks are key elements of the scientific method and a staple in many disciplines. However, leading journals in developmental psychology rarely include explicit replications of prior research conducted by different investigators, and few require authors to establish in their articles or online appendices that their key results are robust across estimation methods, data sets, and demographic subgroups. This article makes the case for prioritizing both explicit replications and, especially, within-study robustness checks in developmental psychology. It provides evidence on variation in effect sizes in developmental studies and documents strikingly different replication and robustness-checking practices in a sample of journals in developmental psychology and a sister behavioral science-applied economics. Our goal is not to show that any one behavioral science has a monopoly on best practices, but rather to show how journals from a related discipline address vital concerns of replication and generalizability shared by all social and behavioral sciences. We provide recommendations for promoting graduate training in replication and robustness-checking methods and for editorial policies that encourage these practices. Although some of our recommendations may shift the form and substance of developmental research articles, we argue that they would generate considerable scientific benefits for the field. (PsycINFO Database Record (c) 2014 APA, all rights reserved).

  17. Nonequilibrium Entropic Bounds for Darwinian Replicators

    Directory of Open Access Journals (Sweden)

    Jordi Piñero

    2018-01-01

    Full Text Available Life evolved on our planet by means of a combination of Darwinian selection and innovations leading to higher levels of complexity. The emergence and selection of replicating entities is a central problem in prebiotic evolution. Theoretical models have shown how populations of different types of replicating entities exclude or coexist with other classes of replicators. Models are typically kinetic, based on standard replicator equations. On the other hand, the presence of thermodynamical constraints for these systems remain an open question. This is largely due to the lack of a general theory of statistical methods for systems far from equilibrium. Nonetheless, a first approach to this problem has been put forward in a series of novel developements falling under the rubric of the extended second law of thermodynamics. The work presented here is twofold: firstly, we review this theoretical framework and provide a brief description of the three fundamental replicator types in prebiotic evolution: parabolic, malthusian and hyperbolic. Secondly, we employ these previously mentioned techinques to explore how replicators are constrained by thermodynamics. Finally, we comment and discuss where further research should be focused on.

  18. Commercial Building Partnerships Replication and Diffusion

    Energy Technology Data Exchange (ETDEWEB)

    Antonopoulos, Chrissi A.; Dillon, Heather E.; Baechler, Michael C.

    2013-09-16

    This study presents findings from survey and interview data investigating replication efforts of Commercial Building Partnership (CBP) partners that worked directly with the Pacific Northwest National Laboratory (PNNL). PNNL partnered directly with 12 organizations on new and retrofit construction projects, which represented approximately 28 percent of the entire U.S. Department of Energy (DOE) CBP program. Through a feedback survey mechanism, along with personal interviews, PNNL gathered quantitative and qualitative data relating to replication efforts by each organization. These data were analyzed to provide insight into two primary research areas: 1) CBP partners’ replication efforts of technologies and approaches used in the CBP project to the rest of the organization’s building portfolio (including replication verification), and, 2) the market potential for technology diffusion into the total U.S. commercial building stock, as a direct result of the CBP program. The first area of this research focused specifically on replication efforts underway or planned by each CBP program participant. Factors that impact replication include motivation, organizational structure and objectives firms have for implementation of energy efficient technologies. Comparing these factors between different CBP partners revealed patterns in motivation for constructing energy efficient buildings, along with better insight into market trends for green building practices. The second area of this research develops a diffusion of innovations model to analyze potential broad market impacts of the CBP program on the commercial building industry in the United States.

  19. The rigors of aligning performance

    OpenAIRE

    Hart, Andrew; Lucas, James

    2015-01-01

    Approved for public release; distribution is unlimited This Joint Applied Project addresses what can be done within the Naval Facilities Engineering Command Northwest community to better align its goals among competing interests from various stakeholders, while balancing the operational and regulatory constraints that often conflict with stakeholder goals and objectives. As a cross-functional organization, competing interests among the various business lines, support lines, and other stake...

  20. Alignment in double capture processes

    International Nuclear Information System (INIS)

    Moretto-Capelle, P.; Benhenni, M.; Bordenave-Montesquieu, A.; Benoit-Cattin, P.; Gleizes, A.

    1993-01-01

    The electron spectra emitted when a double capture occurs in N 7+ +He and Ne 8+ +He systems at 10 qkeV collisional energy, allow us to determine the angular distributions of the 3 ell 3 ell ' lines through a special spectra fitting procedure which includes interferences between neighbouring states. It is found that the doubly excited states populated in double capture processes are generally aligned

  1. Alignment in double capture processes

    Energy Technology Data Exchange (ETDEWEB)

    Moretto-Capelle, P.; Benhenni, M.; Bordenave-Montesquieu, A.; Benoit-Cattin, P.; Gleizes, A. (IRSAMC, URA CNRS 770, Univ. Paul Sabatier, 118 rte de Narbonne, 31062 Toulouse Cedex (France))

    1993-06-05

    The electron spectra emitted when a double capture occurs in N[sup 7+]+He and Ne[sup 8+]+He systems at 10 qkeV collisional energy, allow us to determine the angular distributions of the 3[ell]3[ell] [prime] lines through a special spectra fitting procedure which includes interferences between neighbouring states. It is found that the doubly excited states populated in double capture processes are generally aligned.

  2. Interest alignment and competitive advantage

    OpenAIRE

    Gottschalg, Oliver; Zollo, Mauricio

    2006-01-01

    This paper articulates a theory of the conditions under which the alignment between individual and collective interests generates sustainable competitive advantage. The theory is based on the influence of tacitness, context-specificity and casual ambiguity in the determinants of different types of motivation (extrinsic, normative intrinsic and hedonic intrinsic), under varying conditions of environmental dynamism. The analysis indicates the need to consider mitivational processes as a complem...

  3. International Business And Aligning CSR

    Directory of Open Access Journals (Sweden)

    Daniel Miret

    2017-11-01

    Full Text Available The labor relationship between the employer and the workers is evaluated and directed by the labor rights which is a group of legal rights that are derived from human rights. Labor rights are more precisely relative to CSR as CSR are based on perspective and point of view of a given corporation. In this perspective implementing the workers and labor rights becomes more difficult compared to the implementation of the CSR. If an international corporation can be able to align CSR with the labor laws the friction between the employees and the corporation and the employee is likely to reduce. There is need to explore whether multinational corporations can be able to align CSR with the labor rights and employee initiatives global market. In this case the analysis focuses on China Brazil and India as the reference countries with cross-sectional secondary data obtained from a survey of the existing sources on the internet. The pertinent question is whether multinational corporations be successful while aligning CSR Corporate Social Responsibility with labor rights and employee initiatives in a competitive global market based on that cross-sectional data. The findings reveal that the uphold of labor rights largely determines morale of the employees and the will to participate in the growth and development of a given business both locally and international. Notably the continued change of CSR has resulted in the replacement of management and government dominated trade unions with more democratic unions of workers that pay attention to the initiatives of the workers. The combination of the internal code of conduct with the workers association labor associations and movements is one of the credible routes that show CSR can be aligned with labor rights.

  4. Human Parvovirus B19 Utilizes Cellular DNA Replication Machinery for Viral DNA Replication.

    Science.gov (United States)

    Zou, Wei; Wang, Zekun; Xiong, Min; Chen, Aaron Yun; Xu, Peng; Ganaie, Safder S; Badawi, Yomna; Kleiboeker, Steve; Nishimune, Hiroshi; Ye, Shui Qing; Qiu, Jianming

    2018-03-01

    Human parvovirus B19 (B19V) infection of human erythroid progenitor cells (EPCs) induces a DNA damage response and cell cycle arrest at late S phase, which facilitates viral DNA replication. However, it is not clear exactly which cellular factors are employed by this single-stranded DNA virus. Here, we used microarrays to systematically analyze the dynamic transcriptome of EPCs infected with B19V. We found that DNA metabolism, DNA replication, DNA repair, DNA damage response, cell cycle, and cell cycle arrest pathways were significantly regulated after B19V infection. Confocal microscopy analyses revealed that most cellular DNA replication proteins were recruited to the centers of viral DNA replication, but not the DNA repair DNA polymerases. Our results suggest that DNA replication polymerase δ and polymerase α are responsible for B19V DNA replication by knocking down its expression in EPCs. We further showed that although RPA32 is essential for B19V DNA replication and the phosphorylated forms of RPA32 colocalized with the replicating viral genomes, RPA32 phosphorylation was not necessary for B19V DNA replication. Thus, this report provides evidence that B19V uses the cellular DNA replication machinery for viral DNA replication. IMPORTANCE Human parvovirus B19 (B19V) infection can cause transient aplastic crisis, persistent viremia, and pure red cell aplasia. In fetuses, B19V infection can result in nonimmune hydrops fetalis and fetal death. These clinical manifestations of B19V infection are a direct outcome of the death of human erythroid progenitors that host B19V replication. B19V infection induces a DNA damage response that is important for cell cycle arrest at late S phase. Here, we analyzed dynamic changes in cellular gene expression and found that DNA metabolic processes are tightly regulated during B19V infection. Although genes involved in cellular DNA replication were downregulated overall, the cellular DNA replication machinery was tightly

  5. Axially alignable nuclear fuel pellets

    International Nuclear Information System (INIS)

    Johansson, E.B.; Klahn, D.H.; Marlowe, M.O.

    1978-01-01

    An axially alignable nuclear fuel pellet of the type stacked in end-to-end relationship within a tubular cladding is described. Fuel cladding failures can occur at pellet interface locations due to mechanical interaction between misaligned fuel pellets and the cladding. Mechanical interaction between the cladding and the fuel pellets loads the cladding and causes increased cladding stresses. Nuclear fuel pellets are provided with an end structure that increases plastic deformation of the pellets at the interface between pellets so that lower alignment forces are required to straighten axially misaligned pellets. Plastic deformation of the pellet ends results in less interactions beween the cladding and the fuel pellets and significantly lowers cladding stresses. The geometry of pellets constructed according to the invention also reduces alignment forces required to straighten fuel pellets that are tilted within the cladding. Plastic deformation of the pellets at the pellet interfaces is increased by providing pellets with at least one end face having a centrally-disposed raised area of convex shape so that the mean temperature and shear stress of the contact area is higher than that of prior art pellets

  6. Alignment for new Subaru ring

    International Nuclear Information System (INIS)

    Zhang, Ch.; Matsui, S.; Hashimoto, S.

    1999-01-01

    The New SUBARU is a synchrotron light source being constructed at the SPring-8 site. The main facility is a 1.5 GeV electron storage ring that provides light beam in the region from VUV to soft X-ray using SPring-8's 1 GeV linac as an injector. The ring, with a circumference of about 119 meters, is composed of six bending cells. Each bending cell has two normal dipoles of 34 degree and one inverse dipole of -8 degree. The ring has six straight sections: two very long straight sections for a 11-m long undulator and an optical klystron, four short straight sections for a 2.3-m undulator, a super-conducting wiggler, rf cavity and injection, etc. The magnets of the storage ring are composed of 12 dipoles (BMs), 6 invert dipoles (BIs), 56 quadrupoles and 44 sextupoles, etc. For the magnet alignment, positions of the dipoles (the BMs and BIs) are determined by network survey method. The multipoles, which are mounted on girders between the dipoles, are aligned with a laser-CCD camera system. This article presents the methodology used to position the different components and particularly to assure the precise alignment of the multipoles. (authors)

  7. Grain alignment in starless cores

    Energy Technology Data Exchange (ETDEWEB)

    Jones, T. J.; Bagley, M. [Minnesota Institute for Astrophysics, University of Minnesota, Minneapolis, MN 55455 (United States); Krejny, M. [Cree Inc., 4600 Silicon Dr., Durham, NC (United States); Andersson, B.-G. [SOFIA Science Center, USRA, Moffett Field, CA (United States); Bastien, P., E-mail: tjj@astro.umn.edu [Centre de recherche en astrophysique du Québec and Départment de Physique, Université de Montréal, Montréal (Canada)

    2015-01-01

    We present near-IR polarimetry data of background stars shining through a selection of starless cores taken in the K band, probing visual extinctions up to A{sub V}∼48. We find that P{sub K}/τ{sub K} continues to decline with increasing A{sub V} with a power law slope of roughly −0.5. Examination of published submillimeter (submm) polarimetry of starless cores suggests that by A{sub V}≳20 the slope for P versus τ becomes ∼−1, indicating no grain alignment at greater optical depths. Combining these two data sets, we find good evidence that, in the absence of a central illuminating source, the dust grains in dense molecular cloud cores with no internal radiation source cease to become aligned with the local magnetic field at optical depths greater than A{sub V}∼20. A simple model relating the alignment efficiency to the optical depth into the cloud reproduces the observations well.

  8. Organization of Replication of Ribosomal DNA in Saccharomyces cerevisiae

    NARCIS (Netherlands)

    Linskens, Maarten H.K.; Huberman, Joel A.

    1988-01-01

    Using recently developed replicon mapping techniques, we have analyzed the replication of the ribosomal DNA in Saccharomyces cerevisiae. The results show that (i) the functional origin of replication colocalizes with an autonomously replicating sequence element previously mapped to the

  9. Improving the quality factor of an RF spiral inductor with non-uniform metal width and non-uniform coil spacing

    International Nuclear Information System (INIS)

    Shen Pei; Zhang Wanrong; Huang Lu; Jin Dongyue; Xie Hongyun

    2011-01-01

    An improved inductor layout with non-uniform metal width and non-uniform spacing is proposed to increase the quality factor (Q factor). For this inductor layout, from outer coil to inner coil, the metal width is reduced by an arithmetic-progression step, while the metal spacing is increased by a geometric-progression step. An improved layout with variable width and changed spacing is of benefit to the Q factor of RF spiral inductor improvement (approximately 42.86%), mainly due to the suppression of eddy-current loss by weakening the current crowding effect in the center of the spiral inductor. In order to increase the Q factor further, for the novel inductor, a patterned ground shield is used with optimized layout together. The results indicate that, in the range of 0.5 to 16 GHz, the Q factor of the novel inductor is at an optimum, which improves by 67% more than conventional inductors with uniform geometry dimensions (equal width and equal spacing), is enhanced by nearly 23% more than a PGS inductor with uniform geometry dimensions, and improves by almost 20% more than an inductor with an improved layout. (semiconductor devices)

  10. Challenges in process integration of catalytic DC plasma synthesis of vertically aligned carbon nanofibres

    International Nuclear Information System (INIS)

    Melechko, Anatoli V; Pearce, Ryan C; Hensley, Dale K; Simpson, Michael L; McKnight, Timothy E

    2011-01-01

    The ability to synthesize free-standing, individual carbon nanofibres (CNFs) aligned perpendicularly to a substrate has enabled fabrication of a large array of devices with nanoscale functional elements, including electron field emission sources, electrochemical probes, neural interface arrays, scanning probes, gene delivery arrays and many others. This was made possible by development of a catalytic plasma process, with DC bias directing the alignment of nanofibres. Successful implementation of prototypical devices has uncovered numerous challenges in the integration of this synthesis process as one of the steps in device fabrication. This paper is dedicated to these engineering and fundamental difficulties that hinder further device development. Relatively high temperature for catalytic synthesis, electrical conductivity of the substrate to maintain DC discharge and other difficulties place restrictions on substrate material. Balancing non-catalytic carbon film deposition and substrate etching, non-uniformity of plasma due to growth of the high aspect ratio structures, plasma instabilities and other factors lead to challenges in controlling the plasma. Ultimately, controlling the atomistic processes at the catalyst nanoparticle (NP) and the behaviour of the NP is the central challenge of plasma nanosynthesis of vertically aligned CNFs.

  11. How many bootstrap replicates are necessary?

    Science.gov (United States)

    Pattengale, Nicholas D; Alipour, Masoud; Bininda-Emonds, Olaf R P; Moret, Bernard M E; Stamatakis, Alexandros

    2010-03-01

    Phylogenetic bootstrapping (BS) is a standard technique for inferring confidence values on phylogenetic trees that is based on reconstructing many trees from minor variations of the input data, trees called replicates. BS is used with all phylogenetic reconstruction approaches, but we focus here on one of the most popular, maximum likelihood (ML). Because ML inference is so computationally demanding, it has proved too expensive to date to assess the impact of the number of replicates used in BS on the relative accuracy of the support values. For the same reason, a rather small number (typically 100) of BS replicates are computed in real-world studies. Stamatakis et al. recently introduced a BS algorithm that is 1 to 2 orders of magnitude faster than previous techniques, while yielding qualitatively comparable support values, making an experimental study possible. In this article, we propose stopping criteria--that is, thresholds computed at runtime to determine when enough replicates have been generated--and we report on the first large-scale experimental study to assess the effect of the number of replicates on the quality of support values, including the performance of our proposed criteria. We run our tests on 17 diverse real-world DNA--single-gene as well as multi-gene--datasets, which include 125-2,554 taxa. We find that our stopping criteria typically stop computations after 100-500 replicates (although the most conservative criterion may continue for several thousand replicates) while producing support values that correlate at better than 99.5% with the reference values on the best ML trees. Significantly, we also find that the stopping criteria can recommend very different numbers of replicates for different datasets of comparable sizes. Our results are thus twofold: (i) they give the first experimental assessment of the effect of the number of BS replicates on the quality of support values returned through BS, and (ii) they validate our proposals for

  12. Aligning molecules with intense nonresonant laser fields

    DEFF Research Database (Denmark)

    Larsen, J.J.; Safvan, C.P.; Sakai, H.

    1999-01-01

    Molecules in a seeded supersonic beam are aligned by the interaction between an intense nonresonant linearly polarized laser field and the molecular polarizability. We demonstrate the general applicability of the scheme by aligning I2, ICl, CS2, CH3I, and C6H5I molecules. The alignment is probed...... by mass selective two dimensional imaging of the photofragment ions produced by femtosecond laser pulses. Calculations on the degree of alignment of I2 are in good agreement with the experiments. We discuss some future applications of laser aligned molecules....

  13. Accelerator and transport line survey and alignment

    International Nuclear Information System (INIS)

    Ruland, R.E.

    1991-10-01

    This paper summarizes the survey and alignment processes of accelerators and transport lines and discusses the propagation of errors associated with these processes. The major geodetic principles governing the survey and alignment measurement space are introduced and their relationship to a lattice coordinate system shown. The paper continues with a broad overview about the activities involved in the step sequence from initial absolute alignment to final smoothing. Emphasis is given to the relative alignment of components, in particular to the importance of incorporating methods to remove residual systematic effects in surveying and alignment operations. Various approaches to smoothing used at major laboratories are discussed. 47 refs., 19 figs., 1 tab

  14. MOF Suppresses Replication Stress and Contributes to Resolution of Stalled Replication Forks.

    Science.gov (United States)

    Singh, Dharmendra Kumar; Pandita, Raj K; Singh, Mayank; Chakraborty, Sharmistha; Hambarde, Shashank; Ramnarain, Deepti; Charaka, Vijaya; Ahmed, Kazi Mokim; Hunt, Clayton R; Pandita, Tej K

    2018-03-15

    The human MOF (hMOF) protein belongs to the MYST family of histone acetyltransferases and plays a critical role in transcription and the DNA damage response. MOF is essential for cell proliferation; however, its role during replication and replicative stress is unknown. Here we demonstrate that cells depleted of MOF and under replicative stress induced by cisplatin, hydroxyurea, or camptothecin have reduced survival, a higher frequency of S-phase-specific chromosome damage, and increased R-loop formation. MOF depletion decreased replication fork speed and, when combined with replicative stress, also increased stalled replication forks as well as new origin firing. MOF interacted with PCNA, a key coordinator of replication and repair machinery at replication forks, and affected its ubiquitination and recruitment to the DNA damage site. Depletion of MOF, therefore, compromised the DNA damage repair response as evidenced by decreased Mre11, RPA70, Rad51, and PCNA focus formation, reduced DNA end resection, and decreased CHK1 phosphorylation in cells after exposure to hydroxyurea or cisplatin. These results support the argument that MOF plays an important role in suppressing replication stress induced by genotoxic agents at several stages during the DNA damage response. Copyright © 2018 American Society for Microbiology.

  15. Sterol Binding by the Tombusviral Replication Proteins Is Essential for Replication in Yeast and Plants.

    Science.gov (United States)

    Xu, Kai; Nagy, Peter D

    2017-04-01

    Membranous structures derived from various organelles are important for replication of plus-stranded RNA viruses. Although the important roles of co-opted host proteins in RNA virus replication have been appreciated for a decade, the equally important functions of cellular lipids in virus replication have been gaining full attention only recently. Previous work with Tomato bushy stunt tombusvirus (TBSV) in model host yeast has revealed essential roles for phosphatidylethanolamine and sterols in viral replication. To further our understanding of the role of sterols in tombusvirus replication, in this work we showed that the TBSV p33 and p92 replication proteins could bind to sterols in vitro The sterol binding by p33 is supported by cholesterol recognition/interaction amino acid consensus (CRAC) and CARC-like sequences within the two transmembrane domains of p33. Mutagenesis of the critical Y amino acids within the CRAC and CARC sequences blocked TBSV replication in yeast and plant cells. We also showed the enrichment of sterols in the detergent-resistant membrane (DRM) fractions obtained from yeast and plant cells replicating TBSV. The DRMs could support viral RNA synthesis on both the endogenous and exogenous templates. A lipidomic approach showed the lack of enhancement of sterol levels in yeast and plant cells replicating TBSV. The data support the notion that the TBSV replication proteins are associated with sterol-rich detergent-resistant membranes in yeast and plant cells. Together, the results obtained in this study and the previously published results support the local enrichment of sterols around the viral replication proteins that is critical for TBSV replication. IMPORTANCE One intriguing aspect of viral infections is their dependence on efficient subcellular assembly platforms serving replication, virion assembly, or virus egress via budding out of infected cells. These assembly platforms might involve sterol-rich membrane microdomains, which are

  16. X-irradiation affects all DNA replication intermediates when inhibiting replication initiation

    International Nuclear Information System (INIS)

    Loenn, U.; Karolinska Hospital, Stockholm

    1982-01-01

    When a human melanoma line was irradiated with 10 Gy, there was, after 30 to 60 min, a gradual reduction in the DNA replication rate. Ten to twelve hours after the irradiation, the DNA replication had returned to near normal rate. The results showed tht low dose-rate X-irradiation inhibits preferentially the formation of small DNA replication intermediates. There is no difference between the inhibition of these replication intermediates formed only in the irradiated cells and those formed also in untreated cells. (U.K.)

  17. Smoothing and instability with magnetic field in a non-uniformly laser-irradiated planar target

    International Nuclear Information System (INIS)

    Bell, A.R.; Epperlein, E.M.

    1986-01-01

    Calculations are presented of the magneto-hydrodynamic response of a planar target to non-uniformities in energy deposition by a laser. The amplitude of the non-uniformities are assumed small and the equations are linearised in small perturbations about the solution for steady planar ablation driven by uniform laser energy deposition. The grad(n)xgrad(T) magnetic field source is included, along with Nernst convection and the Righi-Leduc heat flow. The magnetic field is shown to give a small increase in smoothing. A source term for magnetic field is included to simulate the effects of the Weibel instability. The instability is not strong enough to overcome the smoothing processes under the present assumptions. (author)

  18. Conductance dips and spin precession in a nonuniform waveguide with spin–orbit coupling

    Energy Technology Data Exchange (ETDEWEB)

    Malyshev, A. I., E-mail: malyshev@phys.unn.ru; Kozulin, A. S. [Lobachevsky Nizhny Novgorod State University (Russian Federation)

    2015-07-15

    An infinite waveguide with a nonuniformity, a segment of finite length with spin–orbit coupling, is considered in the case when the Rashba and Dresselhaus parameters are identical. Analytical expressions have been derived in the single-mode approximation for the conductance of the system for an arbitrary initial spin state. Based on numerical calculations with several size quantization modes, we have detected and described the conductance dips arising when the waves are localized in the nonuniformity due to the formation of an effective potential well in it. We show that allowance for the evanescent modes under carrier spin precession in an effective magnetic field does not lead to a change in the direction of the average spin vector at the output of the system.

  19. Non-Uniform Dose Mapping Controlled by Modulated Vertical and Horizontal Scans

    International Nuclear Information System (INIS)

    Ninomiya, S.; Kimura, Y.; Kudo, T.; Ochi, A.; Toda, R.; Tsukihara, M.; Sato, F.; Fuse, G.; Ueno, K.; Sugitani, M.

    2008-01-01

    Since geometries of semi-conductor devices continue to shrink, the requirement for each process becomes severer to keep uniformity of electrical parameters of the semi-conductor devices. A larger wafer also causes larger variations. Thus it has been strongly required for ion implantation process to compensate for the variations from other processes because of its good dose controllability. A newly developed mapping of intentional non-uniform dosage system, which is named 'MIND system', is implemented in SEN's single-wafer-type implanters. The MIND system controls both horizontal and vertical scan speed simultaneously. Intentional two-dimensional non-uniform profiles of sheet resistance, such as concentric and eccentric profiles, are obtained only by single-step ion implantation.

  20. Study of submelt laser induced junction nonuniformities using Therma-Probe

    DEFF Research Database (Denmark)

    Rosseel, E.; Bogdanowicz, J; Clarysse, T.

    2010-01-01

    to standard and micro-four-point probe sheet resistance data, secondary ion mass spectrometry, and Hall measurements obtained during earlier studies. Besides the impact of the nonuniformities on the “conventional” thermal wave signal, they found a strong correlation to the dc reflectance of the probe laser...... both at macroscopic and microscopic levels. In this work, the authors present high resolution Therma-Probe® measurements to assess the junction nonuniformity on 0.5 keV boron junctions and zoom in on the effect of temperature variations and multiple subsequent laser scans. The results are compared...... (lambda = 675 nm). The dc probe reflectance is dominated by free carriers and is highly correlated to the sheet resistance both on blanket wafers and on real device wafers. ©2010 American Vacuum Society...

  1. Nonuniform Sparse Data Clustering Cascade Algorithm Based on Dynamic Cumulative Entropy

    Directory of Open Access Journals (Sweden)

    Ning Li

    2016-01-01

    Full Text Available A small amount of prior knowledge and randomly chosen initial cluster centers have a direct impact on the accuracy of the performance of iterative clustering algorithm. In this paper we propose a new algorithm to compute initial cluster centers for k-means clustering and the best number of the clusters with little prior knowledge and optimize clustering result. It constructs the Euclidean distance control factor based on aggregation density sparse degree to select the initial cluster center of nonuniform sparse data and obtains initial data clusters by multidimensional diffusion density distribution. Multiobjective clustering approach based on dynamic cumulative entropy is adopted to optimize the initial data clusters and the best number of the clusters. The experimental results show that the newly proposed algorithm has good performance to obtain the initial cluster centers for the k-means algorithm and it effectively improves the clustering accuracy of nonuniform sparse data by about 5%.

  2. Effects of non-uniform embedments on earthquake responses of nuclear reactor building

    International Nuclear Information System (INIS)

    Koyanagi, Y.; Okamoto, S.; Yoshida, K.; Inove, H.

    1989-01-01

    The nuclear reactor buildings have the portion embedded in soil. In the seismic design of such structures, it is essential to consider the effects of the embedment on the earthquake response. Most studies on these effects, however, assume the uniform embedment, i.e. the depth of the embedment is constant, which is convenient for the design and analysis. The behavior of the earthquake response considering the three-dimensional aspects of non-uniform embedment has not been made clear yet. In this paper, the authors evaluate the effects of the non-uniform embedment in an inclined ground surface on the earthquake response of a nuclear reactor building as illustrated. A typical PWR type reactor building is chosen as an analysis structure model. Four different types of embedment are set up for the comparison study. The three-dimensional analysis is carried out considering the geometry of embedment

  3. Viscoelastic Fluid over a Stretching Sheet with Electromagnetic Effects and Nonuniform Heat Source/Sink

    Directory of Open Access Journals (Sweden)

    Kai-Long Hsiao

    2010-01-01

    Full Text Available A magnetic hydrodynamic (MHD of an incompressible viscoelastic fluid over a stretching sheet with electric and magnetic dissipation and nonuniform heat source/sink has been studied. The buoyant effect and the electric number E1 couple with magnetic parameter M to represent the dominance of the electric and magnetic effects, and adding the specific item of nonuniform heat source/sink is presented in governing equations which are the main contribution of this study. The similarity transformation, the finite-difference method, Newton method, and Gauss elimination method have been used to analyze the present problem. The numerical solutions of the flow velocity distributions, temperature profiles, and the important wall unknown values of f''(0 and θ'(0 have been carried out. The parameter Pr, E1, or Ec can increase the heat transfer effects, but the parameter M or A* may decrease the heat transfer effects.

  4. Selective catalytic reduction converter design: The effect of ammonia nonuniformity at inlet

    International Nuclear Information System (INIS)

    Paramadayalan, Thiyagarajan; Pant, Atul

    2013-01-01

    A three-dimensional CFD model of SCR converter with detailed chemistry is developed. The model is used to study the effects of radial variation in inlet ammonia profile on SCR emission performance at different temperatures. The model shows that radial variation in inlet ammonia concentration affects the SCR performance in the operating range of 200-400 .deg. C. In automotive SCR systems, ammonia is non-uniformly distributed due to evaporation/reaction of injected urea, and using a 1D model or a 3D model with flat ammonia profile at inlet for these conditions can result in erroneous emission prediction. The 3D SCR model is also used to study the effect of converter design parameters like inlet cone angle and monolith cell density on the SCR performance for a non-uniform ammonia concentration profile at the inlet. The performance of SCR is evaluated using DeNO x efficiency and ammonia slip

  5. A new purely growing instability in a strongly magnetized nonuniform pair plasma

    International Nuclear Information System (INIS)

    Shukla, Nitin; Shukla, P.K.

    2007-01-01

    It is shown that a strongly magnetized nonuniform electron-positron (hereafter referred to as e-p or pair) plasma is unstable against low-frequency (in comparison with the electron gyrofrequency) electrostatic oscillations. For this purpose, a dispersion relation is derived by using the Poisson equation as well as the electron and positron continuity equations with the guiding center drifts for the electron and positron fluids. The dispersion relation admits a purely growing instability in the presence of the equilibrium density and magnetic field inhomogeneities. Physically, instability arises because of the inhomogeneous magnetic field induced differential electron and positron density fluctuations, which do not keep in phase with the electrostatic potential arising from the charge separation in our nonuniform pair plasmas

  6. Tunable pinning effects produced by non-uniform antidot arrays in YBCO thin films

    Energy Technology Data Exchange (ETDEWEB)

    George, J.; Jones, A.; Al-Qurainy, M. [Institute for Superconducting and Electronic Materials, University of Wollongong, NSW (Australia); Fedoseev, S.A. [Institute for Superconducting and Electronic Materials, University of Wollongong, NSW (Australia); Centre for Medical Radiation Physics, University of Wollongong, NSW (Australia); Rosenfeld, A. [Centre for Medical Radiation Physics, University of Wollongong, NSW (Australia); Pan, A.V. [Institute for Superconducting and Electronic Materials, University of Wollongong, NSW (Australia); National Research Nuclear University MEPhI (Moscow Engineering Physics Institute), Moscow (Russian Federation)

    2017-04-15

    Uniform, graded and spaced arrays of 3 μm triangular antidots in pulsed laser deposited YBa{sub 2}Cu{sub 3}O{sub 7} (YBCO) superconducting thin films are compared by examining the improvements in the critical current density J{sub c} they produced. The comparison is made to establish the role of their lithographically defined (non-)uniformity and the effectiveness to control and/or enhance the critical current density. It is found that almost all types of non-uniform arrays, including graded ones enhance J{sub c} over the broad applied magnetic field and temperature range due to the modified critical state. Whereas uniform arrays of antidots either reduce or produce no effect on J{sub c} compared to the original (as-deposited) thin films. (copyright 2017 by WILEY-VCH Verlag GmbH and Co. KGaA, Weinheim)

  7. Selective exfoliation of single-layer graphene from non-uniform graphene grown on Cu

    International Nuclear Information System (INIS)

    Lim, Jae-Young; Lee, Jae-Hyun; Jang, Hyeon-Sik; Whang, Dongmok; Joo, Won-Jae; Hwang, SungWoo

    2015-01-01

    Graphene growth on a copper surface via metal-catalyzed chemical vapor deposition has several advantages in terms of providing high-quality graphene with the potential for scale-up, but the product is usually inhomogeneous due to the inability to control the graphene layer growth. The non-uniform regions strongly affect the reliability of the graphene in practical electronic applications. Herein, we report a novel graphene transfer method that allows for the selective exfoliation of single-layer graphene from non-uniform graphene grown on a Cu foil. Differences in the interlayer bonding energy are exploited to mechanically separate only the top single-layer graphene and transfer this to an arbitrary substrate. The dry-transferred single-layer graphene showed electrical characteristics that were more uniform than those of graphene transferred using conventional wet-etching transfer steps. (paper)

  8. Absolute parametric instability of low frequency waves in a 2-D nonuniform anisotropic warm plasma

    International Nuclear Information System (INIS)

    Zaki, N.G.

    2004-01-01

    Using the separation method, the problem of absolute parametric instability (API) of electrostatic waves in magnetized pumped warm plasma is investigated. In this case the effect of static strong magnetic field is considered. The problem of strong magnetic field is solved in 2-D nonuniform plane plasma. The equations which describe the spatial part of the electric potential are obtained. Also the growth rates and conditions of the parametric instability for periodic cases are obtained. It is found that the spatial nonuniformity of the plasma exerts a stabilizing effect on the API. It is shown that the growth rates of periodic and aperiodic API in warm plasma are reduced in comparison with a cold plasma case

  9. Non-uniformly sampled grids in double pole coordinate system for freeform reflector construction

    Science.gov (United States)

    Ma, Donglin; Pacheco, Shaun; Feng, Zexin; Liang, Rongguang

    2015-08-01

    We propose a new method to design freeform reflectors by nonuniformly sampling the source intensity distribution in double pole coordinate system. In double pole coordinate system, there is no pole for the whole hemisphere because both poles of the spherical coordinate system are moved to southernmost point of the sphere and overlapped together. With symmetric definition of both angular coordinates in the modified double pole coordinate system, a better match between the source intensity distribution and target irradiance distribution can be achieved for reflectors with large acceptance solid angle, leading to higher light efficiency and better uniformity on the target surface. With non-uniform sampling of the source intensity, we can design circular freeform reflector to obtain uniform rectangular illumination pattern. Aided by the feedback optimization, the freeform reflector can achieve the collection efficiency for ideal point source over 0.7 and relative standard deviation (RSD) less than 0.1.

  10. Microscopic image processing system for measuring nonuniform film thickness profiles: Image scanning ellipsometry

    International Nuclear Information System (INIS)

    Liu, A.H.; Plawsky, J.L.; Wayner, P.C. Jr.

    1993-01-01

    The long-term objective of this research program is to determine the stability and heat transfer characteristics of evaporating thin films. The current objective is to develop and use a microscopic image-processing system (IPS) which has two parts: an image analyzing interferometer (IAI) and an image scanning ellipsometer (ISE). The primary purpose of this paper is to present the basic concept of ISE, which is a novel technique to measure the two dimensional thickness profile of a non-uniform, thin film, from several nm up to several μm, in a steady state as well as in a transient state. It is a full-field imaging technique which can study every point on the surface simultaneously with high spatial resolution and thickness sensitivity, i.e., it can measure and map the 2-D film thickness profile. The ISE was tested by measuring the thickness profile and the refractive index of a nonuniform solid film

  11. Many-junction photovoltaic device performance under non-uniform high-concentration illumination

    Science.gov (United States)

    Valdivia, Christopher E.; Wilkins, Matthew M.; Chahal, Sanmeet S.; Proulx, Francine; Provost, Philippe-Olivier; Masson, Denis P.; Fafard, Simon; Hinzer, Karin

    2017-09-01

    A parameterized 3D distributed circuit model was developed to calculate the performance of III-V solar cells and photonic power converters (PPC) with a variable number of epitaxial vertically-stacked pn junctions. PPC devices are designed with many pn junctions to realize higher voltages and to operate under non-uniform illumination profiles from a laser or LED. Performance impacts of non-uniform illumination were greatly reduced with increasing number of junctions, with simulations comparing PPC devices with 3 to 20 junctions. Experimental results using Azastra Opto's 12- and 20-junction PPC illuminated by an 845 nm diode laser show high performance even with a small gap between the PPC and optical fiber output, until the local tunnel junction limit is reached.

  12. Nonuniform Overlapping Method in Designing Microstrip Patch Antennas Using Genetic Algorithm Optimization

    Directory of Open Access Journals (Sweden)

    J. M. Jeevani W. Jayasinghe

    2015-01-01

    Full Text Available Genetic algorithm (GA has been a popular optimization technique used for performance improvement of microstrip patch antennas (MPAs. When using GA, the patch geometry is optimized by dividing the patch area into small rectangular cells. This has an inherent problem of adjacent cells being connected to each other with infinitesimal connections, which may not be achievable in practice due to fabrication tolerances in chemical etching. As a solution, this paper presents a novel method of dividing the patch area into cells with nonuniform overlaps. The optimized design, which is obtained by using fixed overlap sizes, shows a quad-band performance covering GSM1800, GSM1900, LTE2300, and Bluetooth bands. In contrast, use of nonuniform overlap sizes leads to obtaining a pentaband design covering GSM1800, GSM1900, UMTS, LTE2300, and Bluetooth bandswith fractional bands with of 38% due to the extra design flexibility.

  13. Effects of a nonuniform open magnetic field on the plasma presheath

    International Nuclear Information System (INIS)

    Sato, Kunihiro; Miyawaki, Fujio

    1991-01-01

    Effects of a nonuniform magnetic field on the plasma presheath is numerically investigated using the plasma equation for a collisionless plasma with a finite-temperature particle source. The present calculation confirms that analytical solutions previously published by the authors are available over a wide range of mirror ratio. Potential drop in the presheath, which considerably depends on both the magnetic strength profile and the spatial distribution of the particle source, is remarkably increased by applying an expanding magnetic field when plasma particles are generated in the inner part of the plasma. An effect of a nonuniform magnetic field on sheath formation is also discussed by using the calculated ion distribution function. If the plasma equation has no singularity at the sheath edge, its solution satisfies the generalized Bohm criterion with the inequality sign in the expanding magnetic field. (author)

  14. Realistic Vascular Replicator for TAVR Procedures.

    Science.gov (United States)

    Rotman, Oren M; Kovarovic, Brandon; Sadasivan, Chander; Gruberg, Luis; Lieber, Baruch B; Bluestein, Danny

    2018-04-13

    Transcatheter aortic valve replacement (TAVR) is an over-the-wire procedure for treatment of severe aortic stenosis (AS). TAVR valves are conventionally tested using simplified left heart simulators (LHS). While those provide baseline performance reliably, their aortic root geometries are far from the anatomical in situ configuration, often overestimating the valves' performance. We report on a novel benchtop patient-specific arterial replicator designed for testing TAVR and training interventional cardiologists in the procedure. The Replicator is an accurate model of the human upper body vasculature for training physicians in percutaneous interventions. It comprises of fully-automated Windkessel mechanism to recreate physiological flow conditions. Calcified aortic valve models were fabricated and incorporated into the Replicator, then tested for performing TAVR procedure by an experienced cardiologist using the Inovare valve. EOA, pressures, and angiograms were monitored pre- and post-TAVR. A St. Jude mechanical valve was tested as a reference that is less affected by the AS anatomy. Results in the Replicator of both valves were compared to the performance in a commercial ISO-compliant LHS. The AS anatomy in the Replicator resulted in a significant decrease of the TAVR valve performance relative to the simplified LHS, with EOA and transvalvular pressures comparable to clinical data. Minor change was seen in the mechanical valve performance. The Replicator showed to be an effective platform for TAVR testing. Unlike a simplified geometric anatomy LHS, it conservatively provides clinically-relevant outcomes and complement it. The Replicator can be most valuable for testing new valves under challenging patient anatomies, physicians training, and procedural planning.

  15. Antares beam-alignment-system performance

    International Nuclear Information System (INIS)

    Appert, Q.D.; Bender, S.C.

    1983-01-01

    The beam alignment system for the 24-beam-sector Antares CO 2 fusion laser automatically aligns more than 200 optical elements. A visible-wavelength alignment technique is employed which uses a telescope/TV system to view point-light sources appropriately located down the beamline. The centroids of the light spots are determined by a video tracker, which generates error signals used by the computer control system to move appropriate mirrors in a closed-loop system. Final touch-up alignment is accomplished by projecting a CO 2 alignment laser beam through the system and sensing its position at the target location. The techniques and control algorithms employed have resulted in alignment accuracies exceeding design requirements. By employing video processing to determine the centroids of diffraction images and by averaging over multiple TV frames, we achieve alignment accuracies better than 0.1 times system diffraction limits in the presence of air turbulence

  16. Chromatic bifocus alignment system for SR stepper

    International Nuclear Information System (INIS)

    Miyatake, Tsutomu

    1991-01-01

    A new alignment system developed for synchrotron radiation (SR) X-ray stepper is described. The alignment system has three key elements as follows. The first is a chromatic bifocus optics which observe high contrast bright images of alignment marks printed on a mask and a wafer. The second is broad band light illumination to observe the wafer alignment mark images which is unaffected by resist film coated on a wafer. The third is a new correlation function which is used in measuring of displacement between a mask and a wafer. The alignment system has achieved alignment accuracy on the order of 0.01 μm. The experimental results of this alignment system are discussed in this paper. (author)

  17. Thermomagnetic force acting on an ellipsoidal body immersed into a nonuniformly heated magnetic liquid

    International Nuclear Information System (INIS)

    Naletova, V.A.; Kvitantsev, A.S.

    2002-01-01

    A prolate spheroidal body immersed into a nonuniformly heated magnetic liquid in an applied magnetic field has been considered. The expressions for the pressure and velocity of the liquid, temperature and magnetic field have been obtained. The formula for a thermomagnetic force acting on the body has been calculated. It has been shown that the body shape needs to be taken into account when we study the thermomagnetic diffusion of the prolate bodies

  18. Desynchronization boost by non-uniform coordinated reset stimulation in ensembles of pulse-coupled neurons

    Science.gov (United States)

    Lücken, Leonhard; Yanchuk, Serhiy; Popovych, Oleksandr V.; Tass, Peter A.

    2013-01-01

    Several brain diseases are characterized by abnormal neuronal synchronization. Desynchronization of abnormal neural synchrony is theoretically compelling because of the complex dynamical mechanisms involved. We here present a novel type of coordinated reset (CR) stimulation. CR means to deliver phase resetting stimuli at different neuronal sub-populations sequentially, i.e., at times equidistantly distributed in a stimulation cycle. This uniform timing pattern seems to be intuitive and actually applies to the neural network models used for the study of CR so far. CR resets the population to an unstable cluster state from where it passes through a desynchronized transient, eventually resynchronizing if left unperturbed. In contrast, we show that the optimal stimulation times are non-uniform. Using the model of weakly pulse-coupled neurons with phase response curves, we provide an approach that enables to determine optimal stimulation timing patterns that substantially maximize the desynchronized transient time following the application of CR stimulation. This approach includes an optimization search for clusters in a low-dimensional pulse coupled map. As a consequence, model-specific non-uniformly spaced cluster states cause considerably longer desynchronization transients. Intriguingly, such a desynchronization boost with non-uniform CR stimulation can already be achieved by only slight modifications of the uniform CR timing pattern. Our results suggest that the non-uniformness of the stimulation times can be a medically valuable parameter in the calibration procedure for CR stimulation, where the latter has successfully been used in clinical and pre-clinical studies for the treatment of Parkinson's disease and tinnitus. PMID:23750134

  19. Research of non-uniform multiple hole straighteners for measuring flow rate

    International Nuclear Information System (INIS)

    Wen Duanzhong; Zhong Dezhen; Cai Zhuti

    1989-01-01

    Standard throttling flowmeters are widely used in process flow rate measurement. Enough upstream and downstream straight pipe are necessary for it. If not, the error will be increased. Mounting straightener is an effective way for solving this problem. Advantages of non-uniform multiple hole straighteners studied by authors are good results for straighting, simple in Structure, convenient for mounting and low cost. So it can be popularized in many applications

  20. The use of non-uniform drowning terminology: a follow-up study.

    Science.gov (United States)

    Schmidt, Andrew C; Sempsrott, Justin R; Szpilman, David; Queiroga, Ana Catarina; Davison, Matt S; Zeigler, Ryan J; McAlister, Sean J

    2017-07-17

    In 2002, the World Congress on Drowning developed a uniform definition for drowning. The aim of this study is to determine the prevalence of "non-uniform drowning terminology" (NUDT) and "non-uniform drowning definitions" (NUDD) in peer-reviewed scientific literature from 2010 to 2016, and compare these findings with those from our unpublished study performing a similar analysis on literature from 2003 to 2010. A systematic review was performed using drowning-specific search terms in Pubmed and Web of Science. Titles and abstracts published between July 2010 and January 2016 were screened for relevance to the study focus. Articles meeting screening criteria were reviewed for exclusion criteria to produce the final group of studies. These articles were reviewed by four reviewers for NUDT and NUDD. The Fisher exact test was used to determine any statistically significant changes. The final group of studies included 167 articles. A total of 53 articles (32%) utilized NUDT, with 100% of these including the term "near drowning". The proportion of articles utilizing NUDT was significantly less than reported by our previous study (p drowning (uniform or non-uniform), with 15% of these utilizing NUDD. Our study reveals a statistically significant improvement over the past thirteen years in the use of uniform drowning terminology in peer-reviewed scientific literature, although year-to-year variability over the current study period does not yield an obvious trend. Of the articles reviewed during the 2010-2016 study period, 32% included outdated and non-uniform drowning terminology and definitions. While this reveals an absolute decrease of 11% as compared with the previous study period (2003-2010), there is still significant room for improvement.

  1. A splitting algorithm for the wavelet transform of cubic splines on a nonuniform grid

    Science.gov (United States)

    Sulaimanov, Z. M.; Shumilov, B. M.

    2017-10-01

    For cubic splines with nonuniform nodes, splitting with respect to the even and odd nodes is used to obtain a wavelet expansion algorithm in the form of the solution to a three-diagonal system of linear algebraic equations for the coefficients. Computations by hand are used to investigate the application of this algorithm for numerical differentiation. The results are illustrated by solving a prediction problem.

  2. Influence of Non-uniform Temperature Field on Spectra of Fibre Bragg Grating

    International Nuclear Information System (INIS)

    Yan, Zhou; Xing-Fang, He; Xiao-Yong, Fang; Jie, Yuan; Li-Qun, Yin; Mao-Sheng, Cao

    2009-01-01

    We simulate the spectrum characteristics of fibre Bragg grating (FBG) with non-uniform temperature using the transmission matrix method, and the results are analysed. It is found that firstly the modulated coefficient of average refractive index is a very important parameter that influences the spectrum characteristic of the fibre Bragg grating, and secondly the spectrum curves are different in different temperature fields at the same parameter. Hence, we can determine the metrical temperature by analysing the spectrum of fibre Bragg grating

  3. Experience with nonuniform damping in the seismic analysis of nuclear plant components

    International Nuclear Information System (INIS)

    Winkel, B.V.; Julyk, L.J.

    1983-01-01

    Individual components of nuclear power plants may exhibit pronounced differences in damping magnitude. Various methods for accounting for nonuniform damping in a structural model are reviewed and evaluated. The methods are compared by solving a beam/pipe model subjected to a typical seismic ground motion. A two-degree-of-freedom variable damping parameter study is also presented. Based upon the experience of evaluating and applying the available methods, application guidelines are presented

  4. Human thermal sensation and comfort in a non-uniform environment with personalized heating.

    Science.gov (United States)

    Deng, Qihong; Wang, Runhuai; Li, Yuguo; Miao, Yufeng; Zhao, Jinping

    2017-02-01

    Thermal comfort in traditionally uniform environment is apparent and can be improved by increasing energy expenses. To save energy, non-uniform environment implemented by personalized conditioning system attracts considerable attention, but human response in such environment is unclear. To investigate regional- and whole-body thermal sensation and comfort in a cool environment with personalized heating. In total 36 subjects (17 males and 19 females) including children, adults and the elderly, were involved in our experiment. Each subject was first asked to sit on a seat in an 18°C chamber (uniform environment) for 40min and then sit on a heating seat in a 16°C chamber (non-uniform environment) for another 40min after 10min break. Subjects' regional- and whole-body thermal sensation and comfort were surveyed by questionnaire and their skin temperatures were measured by wireless sensors. We statistically analyzed subjects' thermal sensation and comfort and their skin temperatures in different age and gender groups and compared them between the uniform and non-uniform environments. Overall thermal sensation and comfort votes were respectively neutral and just comfortable in 16°C chamber with personalized heating, which were significantly higher than those in 18°C chamber without heating (pthermal sensation and comfort was consistent in subjects of different age and gender. However, adults and the females were more sensitive to the effect of personalized heating and felt cooler and less comfort than children/elderly and the males respectively. Variations of the regional thermal sensation/comfort across human body were consistent with those of skin temperature. Personalized heating significantly improved human thermal sensation and comfort in non-uniform cooler environment, probably due to the fact that it increased skin temperature. However, the link between thermal sensation/comfort and variations of skin temperature is rather complex and warrant further

  5. Elucidation of the Dynamics for Hot-Spot Initiation at Nonuniform Interfaces of Highly Shocked Materials

    Science.gov (United States)

    2011-12-07

    with nonuniform interfaces plays an essential role in the interfacial instabilities in iner- tial confinement fusion (ICF), in shock-induced...involved in interfacial instabilities at the atomic scale, providing insights on such phenomenon. Thus ReaxFF provides the possibility of realistic...on the IPDI and DOA to determine the charges and structures for the binder model. These QM results and model preparation procedure are provided as part

  6. On the Super-Turing Computational Power of Non-Uniform Families of Neuromata

    Czech Academy of Sciences Publication Activity Database

    Wiedermann, Jiří

    2002-01-01

    Roč. 12, č. 5 (2002), s. 509-516 ISSN 1210-0552. [SOFSEM 2002 Workshop on Soft Computing. Milovy, 28.11.2002-29.11.2002] R&D Projects: GA ČR GA201/00/1489 Institutional research plan: AV0Z1030915 Keywords : neuromata * Turing machines with advice * non-uniform computational complexity * super-Turing computational power Subject RIV: BA - General Mathematics

  7. Mixed Non-Uniform Width / Evanescent Mode Ceramic Resonator Waveguide Filter With Wide Spurious Free Bandwidth

    OpenAIRE

    Afridi, S; Sandhu, M; Hunter, I

    2016-01-01

    This paper presents a method to improve the spurious performance of integrated ceramic waveguide filters. Nonuniform width ceramic waveguide resonator and evanescent mode ceramic resonators are employed together to the resonant frequencies of higher order modes. The proposed designs give 75% improvement in stop band response when compared to uniform width ceramic waveguide filter. Simulated results of two six pole chebyshev filters are presented here with improved stop band performance.

  8. Numerical modeling of positive streamer in air in nonuniform fields: Efficiency of radicals production

    International Nuclear Information System (INIS)

    Kulikovsky, A.A.

    2001-01-01

    The efficiency of streamer corona depends on a number of factors such as geometry of electrodes, voltage pulse parameters, gas pressure etc. In a past 5 years a two-dimensional models of streamer in nonuniform fields in air have been developed. These models allow to simulate streamer dynamics and generation of species and to investigate the influence of external parameters on species production. In this work the influence of Laplacian field on efficiency of radicals generation is investigated

  9. Radiation flaw detector for testing non-uniform surface bodies of revolution

    International Nuclear Information System (INIS)

    Valevich, M.I.

    1984-01-01

    Radiation flaw detector for testing bodies of revolution with non-uniform surface, welded joints, etc., based on spatial filtration and differentiation of ionizing radiation flux has been described. The calculation of the most important unit of flaw detector - integrators - is made. Experimental studies of the sensitivity have shown, that the radiation flaw detector can be used for rapid testing of products with the sensitivity comparable with the sensitivity of radiographic testing of steel

  10. Enceladus's crust as a non-uniform thin shell: I tidal deformations

    Science.gov (United States)

    Beuthe, Mikael

    2018-03-01

    The geologic activity at Enceladus's south pole remains unexplained, though tidal deformations are probably the ultimate cause. Recent gravity and libration data indicate that Enceladus's icy crust floats on a global ocean, is rather thin, and has a strongly non-uniform thickness. Tidal effects are enhanced by crustal thinning at the south pole, so that realistic models of tidal tectonics and dissipation should take into account the lateral variations of shell structure. I construct here the theory of non-uniform viscoelastic thin shells, allowing for depth-dependent rheology and large lateral variations of shell thickness and rheology. Coupling to tides yields two 2D linear partial differential equations of the fourth order on the sphere which take into account self-gravity, density stratification below the shell, and core viscoelasticity. If the shell is laterally uniform, the solution agrees with analytical formulas for tidal Love numbers; errors on displacements and stresses are less than 5% and 15%, respectively, if the thickness is less than 10% of the radius. If the shell is non-uniform, the tidal thin shell equations are solved as a system of coupled linear equations in a spherical harmonic basis. Compared to finite element models, thin shell predictions are similar for the deformations due to Enceladus's pressurized ocean, but differ for the tides of Ganymede. If Enceladus's shell is conductive with isostatic thickness variations, surface stresses are approximately inversely proportional to the local shell thickness. The radial tide is only moderately enhanced at the south pole. The combination of crustal thinning and convection below the poles can amplify south polar stresses by a factor of 10, but it cannot explain the apparent time lag between the maximum plume brightness and the opening of tiger stripes. In a second paper, I will study the impact of a non-uniform crust on tidal dissipation.

  11. Image restoration from non-uniform magnetic field influence for direct Fourier NMR imaging

    International Nuclear Information System (INIS)

    Sekihara, K.; Kuroda, M.; Kohno, H.

    1984-01-01

    A new technique is proposed for NMR image restoration from the influence of main magnetic field non-uniformities. This technique is applicable to direct Fourier NMR imaging. The mathematical basis and details of this technique are fully described. Modification to include image restoration from non-linear field gradient influence is also presented. Computer simulation demonstrates the effectiveness of this technique for both Fourier zeugmatography and spin-warp imaging. (author)

  12. Beam pattern improvement by compensating array nonuniformities in a guided wave phased array

    International Nuclear Information System (INIS)

    Kwon, Hyu-Sang; Lee, Seung-Seok; Kim, Jin-Yeon

    2013-01-01

    This paper presents a simple data processing algorithm which can improve the performance of a uniform circular array based on guided wave transducers. The algorithm, being intended to be used with the delay-and-sum beamformer, effectively eliminates the effects of nonuniformities that can significantly degrade the beam pattern. Nonuniformities can arise intrinsically from the array geometry when the circular array is transformed to a linear array for beam steering and extrinsically from unequal conditions of transducers such as element-to-element variations of sensitivity and directivity. The effects of nonuniformities are compensated by appropriately imposing weight factors on the elements in the projected linear array. Different cases are simulated, where the improvements of the beam pattern, especially the level of the highest sidelobe, are clearly seen, and related issues are discussed. An experiment is performed which uses A0 mode Lamb waves in a steel plate, to demonstrate the usefulness of the proposed method. The discrepancy between theoretical and experimental beam patterns is explained by accounting for near-field effects. (paper)

  13. 3D-2D Deformable Image Registration Using Feature-Based Nonuniform Meshes.

    Science.gov (United States)

    Zhong, Zichun; Guo, Xiaohu; Cai, Yiqi; Yang, Yin; Wang, Jing; Jia, Xun; Mao, Weihua

    2016-01-01

    By using prior information of planning CT images and feature-based nonuniform meshes, this paper demonstrates that volumetric images can be efficiently registered with a very small portion of 2D projection images of a Cone-Beam Computed Tomography (CBCT) scan. After a density field is computed based on the extracted feature edges from planning CT images, nonuniform tetrahedral meshes will be automatically generated to better characterize the image features according to the density field; that is, finer meshes are generated for features. The displacement vector fields (DVFs) are specified at the mesh vertices to drive the deformation of original CT images. Digitally reconstructed radiographs (DRRs) of the deformed anatomy are generated and compared with corresponding 2D projections. DVFs are optimized to minimize the objective function including differences between DRRs and projections and the regularity. To further accelerate the above 3D-2D registration, a procedure to obtain good initial deformations by deforming the volume surface to match 2D body boundary on projections has been developed. This complete method is evaluated quantitatively by using several digital phantoms and data from head and neck cancer patients. The feature-based nonuniform meshing method leads to better results than either uniform orthogonal grid or uniform tetrahedral meshes.

  14. 3D-2D Deformable Image Registration Using Feature-Based Nonuniform Meshes

    Directory of Open Access Journals (Sweden)

    Zichun Zhong

    2016-01-01

    Full Text Available By using prior information of planning CT images and feature-based nonuniform meshes, this paper demonstrates that volumetric images can be efficiently registered with a very small portion of 2D projection images of a Cone-Beam Computed Tomography (CBCT scan. After a density field is computed based on the extracted feature edges from planning CT images, nonuniform tetrahedral meshes will be automatically generated to better characterize the image features according to the density field; that is, finer meshes are generated for features. The displacement vector fields (DVFs are specified at the mesh vertices to drive the deformation of original CT images. Digitally reconstructed radiographs (DRRs of the deformed anatomy are generated and compared with corresponding 2D projections. DVFs are optimized to minimize the objective function including differences between DRRs and projections and the regularity. To further accelerate the above 3D-2D registration, a procedure to obtain good initial deformations by deforming the volume surface to match 2D body boundary on projections has been developed. This complete method is evaluated quantitatively by using several digital phantoms and data from head and neck cancer patients. The feature-based nonuniform meshing method leads to better results than either uniform orthogonal grid or uniform tetrahedral meshes.

  15. Bridge density functional approximation for non-uniform hard core repulsive Yukawa fluid

    International Nuclear Information System (INIS)

    Zhou Shiqi

    2008-01-01

    In this work, a bridge density functional approximation (BDFA) (J. Chem. Phys. 112, 8079 (2000)) for a non-uniform hard-sphere fluid is extended to a non-uniform hard-core repulsive Yukawa (HCRY) fluid. It is found that the choice of a bulk bridge functional approximation is crucial for both a uniform HCRY fluid and a non-uniform HCRY fluid. A new bridge functional approximation is proposed, which can accurately predict the radial distribution function of the bulk HCRY fluid. With the new bridge functional approximation and its associated bulk second order direct correlation function as input, the BDFA can be used to well calculate the density profile of the HCRY fluid subjected to the influence of varying external fields, and the theoretical predictions are in good agreement with the corresponding simulation data. The calculated results indicate that the present BDFA captures quantitatively the phenomena such as the coexistence of solid-like high density phase and low density gas phase, and the adsorption properties of the HCRY fluid, which qualitatively differ from those of the fluids combining both hard-core repulsion and an attractive tail. (condensed matter: structure, thermal and mechanical properties)

  16. Characterization of nonuniform chaos in area-preserving nonlinear maps through a continuous archetype

    International Nuclear Information System (INIS)

    Cerbelli, S.; Giona, M.

    2008-01-01

    Numerical investigations conducted over a wealth of nonlinear area-preserving smooth maps (e.g. the Standard Map) showed that these systems possess physically relevant features that are not captured by any continuous archetype of two-dimensional conservative dynamics. Among these properties are the dispersive behavior of stretch factor statistics, the multifractal character of the measure associated with invariant foliations, the sign-alternating property, accounting for the nestedly bent structure of invariant foliations, and the strict inequality between the topological entropy, h top , and the Lyapunov exponent, Λ. We refer to systems possessing all of these properties as nonuniformly chaotic. In this article, we present a globally continuous, piecewise-smooth area-preserving transformation, the toral homeomorphism H, as an archetype of nonuniformly chaotic behavior. The relatively simple structure of point set dynamics and the closed-form knowledge of the pointwise expanding and contracting invariant directions associated with H, permits to derive either analytically, or with arbitrary numerical precision, the standard chaotic properties as well as the dynamics of the physically relevant properties that define nonuniform chaos. Potentialities and limitations of the model proposed in representing geometric and statistical properties of physically relevant smooth systems are discussed in detail

  17. Characterization and Processing of Non-Uniformities in Back-Illuminated CCDs

    Science.gov (United States)

    Lemm, Alia D.; Della-Rose, Devin J.; Maddocks, Sally

    2018-01-01

    In astronomical photometry, Charged Coupled Device (CCD) detectors are used to achieve high precision photometry and must be properly calibrated to correct for noise and pixel non-uniformities. Uncalibrated images may contain bias offset, dark current, bias structure and uneven illumination. In addition, standard data reduction is often not sufficient to “normalize” imagery to single-digit millimagnitude (mmag) precision. We are investigating an apparent non-uniformity, or interference pattern, in a back-illuminated sensor, the Alta U-47, attached to a DFM Engineering 41-cm Ritchey-Chrétien f/8 telescope. Based on the amplitude of this effect, we estimate that instrument magnitude peak-to-valley deviations of 50 mmag or more may result. Our initial testing strongly suggests that reflected skylight from high pressure sodium city lights may be the cause of this interference pattern. Our research goals are twofold: to fully characterize this non-uniformity and to determine the best method to remove this interference pattern from our reduced CCD images.

  18. Synergistic nonuniform shortening of atrial refractory period induced by autonomic stimulation.

    Science.gov (United States)

    Takei, M; Furukawa, Y; Narita, M; Ren, L M; Karasawa, Y; Murakami, M; Chiba, S

    1991-12-01

    We investigated the nonuniform effects of autonomic nerve stimulation of the effective refractory period (ERP) of the right atrium in the anesthetized dog. Stimulation of the discrete intracardiac sympathetic nerves to the sinoatrial (SA) nodal region uniformly shortened ERPs at three sites in the right atrium after administration of atropine. Right ansa subclavia (RS) stimulation similarly shortened ERPs in the absence of atropine. Stimulation of the discrete intracardiac parasympathetic nerves to the SA nodal region (SAP stimulation) shortened ERPs of the right atrium in a nonuniform manner. Simultaneous RS and SAP stimulation additively shortened ERPs at each site and decreased sinus rate much more than SAP stimulation alone. Shortening of ERP induced by SAP stimulation was greater than that induced by RS stimulation at similar absolute changes in heart rate. These results suggest that simultaneous activation of sympathetic and parasympathetic nerves nonuniformly shortens the ERP in the right atrium as the algebraic sum of the individual responses to each stimulation. However, parasympathetics exert the principal neural control over atrial ERP.

  19. Effects of Warmness and Spatial Nonuniformity of the Plasma Waveguide on Periodic Absolute Parametric Instability

    International Nuclear Information System (INIS)

    Zaki, N.G.; Bekheit, A.H.

    2011-01-01

    The periodic absolute parametric instability (API) of the low-frequency oscillations excited by a monochromatic pumping field of arbitrary amplitude in a warm I-D nonuniform magneto active plasma is investigated. One can use the separation method to solve the two-fluid plasma equations which describe the system. The method used enables us to determine the frequencies and growth rates of unstable modes and the self-consistent electric field. Plasma electrons are considered to have a thermal velocity. One can examine different solutions for the spatial equation in the following cases: A) API in uniform Plasma B) API in nonuniform plasma, we study this case for two variants: B.1) Exact harmonic oscillator and B.2) Bounded harmonic oscillator (bounded plasma). Increment is found in the buildup of the oscillations, and it is shown that the spatial nonuniformity of the plasma exerts a stabilizing effect on the parametric instability. It is shown that the growth rate of API in warm plasma is reduced compared to cold plasma. It is found also that the warmness of the plasma has no effect on the solution of the space part of the problem ( only through the separation constant )

  20. Test stand for non-uniformity correction of microbolometer focal plane arrays used in thermal cameras

    Science.gov (United States)

    Krupiński, Michał; Bareła, Jaroslaw; Firmanty, Krzysztof; Kastek, Mariusz

    2013-10-01

    Uneven response of particular detectors (pixels) to the same incident power of infrared radiation is an inherent feature of microbolometer focal plane arrays. As a result an image degradation occurs, known as Fixed Pattern Noise (FPN), which distorts the thermal representation of an observed scene and impairs the parameters of a thermal camera. In order to compensate such non-uniformity, several NUC correction methods are applied in digital data processing modules implemented in thermal cameras. Coefficients required to perform the non-uniformity correction procedure (NUC coefficients) are determined by calibrating the camera against uniform radiation sources (blackbodies). Non-uniformity correction is performed in a digital processing unit in order to remove FPN pattern in the registered thermal images. Relevant correction coefficients are calculated on the basis of recorded detector responses to several values of radiant flux emitted from reference IR radiation sources (blackbodies). The measurement of correction coefficients requires specialized setup, in which uniform, extended radiation sources with high temperature stability are one of key elements. Measurement stand for NUC correction developed in Institute of Optoelectronics, MUT, comprises two integrated extended blackbodies with the following specifications: area 200×200 mm, stabilized absolute temperature range +15 °C÷100 °C, and uniformity of temperature distribution across entire surface +/-0.014 °C. Test stand, method used for the measurement of NUC coefficients and the results obtained during the measurements conducted on a prototype thermal camera will be presented in the paper.

  1. Impulsive response of nonuniform density liquid in a laterally excited tank

    International Nuclear Information System (INIS)

    Tang, Y.; Chang, Y.W.

    1994-04-01

    A study on the impulsive component of the dynamic response of a liquid of nonuniform density in a tank undergoing lateral base excitations is presented. The system considered is a circular cylindrical tank containing an incompressible and inviscid liquid whose density increases with the liquid depth. The density distribution along the depth can be of any arbitrary continuous or discontinuous function. In the analysis, the liquid field is divided into n layers. The thickness of the liquid layers can be different, but the density of each liquid layer is considered to be uniform and is equal to the value of the original liquid density at the mid-height of that layer. The problem is solved by the eigenfunction expansion in conjunction with the transfer matrix technique. The effect of the nonuniform liquid density on the impulsive component of the dynamic response is illustrated in a numerical example in which the linear and cosine distributions of the liquid density are assumed. The response quantities examined include the impulsive pressure, base shear and moments. The results are presented in tabular and graphical forms. It is found that the impulsive pressure distribution along the tank wall is not sensitive to the detailed distribution function of the density, and the base shear and moments for the nonuniform liquid can be estimated by assuming an equivalent uniform liquid density that preserves the total liquid weight. The effect of tank flexibility is assessed by a simple approach in which the response quantities for flexible tanks are evaluated by simplified equations

  2. Non-uniform cosine modulated filter banks using meta-heuristic algorithms in CSD space

    Directory of Open Access Journals (Sweden)

    Shaeen Kalathil

    2015-11-01

    Full Text Available This paper presents an efficient design of non-uniform cosine modulated filter banks (CMFB using canonic signed digit (CSD coefficients. CMFB has got an easy and efficient design approach. Non-uniform decomposition can be easily obtained by merging the appropriate filters of a uniform filter bank. Only the prototype filter needs to be designed and optimized. In this paper, the prototype filter is designed using window method, weighted Chebyshev approximation and weighted constrained least square approximation. The coefficients are quantized into CSD, using a look-up-table. The finite precision CSD rounding, deteriorates the filter bank performances. The performances of the filter bank are improved using suitably modified meta-heuristic algorithms. The different meta-heuristic algorithms which are modified and used in this paper are Artificial Bee Colony algorithm, Gravitational Search algorithm, Harmony Search algorithm and Genetic algorithm and they result in filter banks with less implementation complexity, power consumption and area requirements when compared with those of the conventional continuous coefficient non-uniform CMFB.

  3. Measurement of fuel importance distribution in non-uniformly distributed fuel systems

    International Nuclear Information System (INIS)

    Yamane, Yoshihiro; Hirano, Yasushi; Yasui, Hazime; Izima, Kazunori; Shiroya, Seiji; Kobayashi, Keiji.

    1995-01-01

    A reactivity effect due to a spatial variation of nuclear fuel concentration is an important problem for nuclear criticality safety in a reprocessing plant. As a theory estimating this reactivity effect, the Goertzel and fuel importance theories are well known. It has been shown that the Goertzel's theory is valid in the range of our experiments based on measurements of reactivity effect and thermal neutron flux in non-uniformly distributed fuel systems. On the other hand, there have been no reports concerning systematic experimental studies on the flatness of fuel importance which is a more general index than the Goertzel's theory. It is derived from the perturbation theory that the fuel importance is proportional to the reactivity change resulting from a change of small amount of fuel mass. Using a uniform and three kinds of nonuniform fuel systems consisting of 93.2% enriched uranium plates and polyethylene plates, the fuel importance distributions were measured. As a result, it was found experimentally that the fuel importance distribution became flat, as its reactivity effect became large. Therefore it was concluded that the flatness of fuel importance distribution is the useful index for estimating reactivity effect of non-uniformly distributed fuel system. (author)

  4. Numerical analysis of blood flow in realistic arteries subjected to strong non-uniform magnetic fields

    International Nuclear Information System (INIS)

    Kenjeres, Sasa

    2008-01-01

    The paper reports on a comprehensive mathematical model for simulations of blood flow under the presence of strong non-uniform magnetic fields. The model consists of a set of Navier-Stokes equations accounting for the Lorentz and magnetisation forces, and a simplified set of Maxwell's equations (Biot-Savart/Ampere's law) for treating the imposed magnetic fields. The relevant hydrodynamic and electromagnetic properties of human blood were taken from the literature. The model is then validated for different test cases ranging from a simple cylindrical geometry to real-life right-coronary arteries in humans. The time-dependency of the wall-shear-stress for different stenosis growth rates and the effects of the imposed strong non-uniform magnetic fields on the blood flow pattern are presented and analysed. It is concluded that an imposed non-uniform magnetic field can create significant changes in the secondary flow patterns, thus making it possible to use this technique for optimisations of targeted drug delivery

  5. Effect of non-uniform surface resistance on the quality factor of superconducting niobium cavity

    Science.gov (United States)

    Tan, Weiwei; Lu, Xiangyang; Yang, Ziqin; Zhao, Jifei; Yang, Deyu; Yang, Yujia

    2016-08-01

    The formula Rs = G /Q0 is commonly used in the calculation of the surface resistance of radio frequency niobium superconducting cavities. The applying of such equation is under the assumption that surface resistance is consistent over the cavity. However, the distribution of the magnetic field varies over the cavity. The magnetic field in the equator is much higher than that in the iris. According to Thermal Feedback Theory, it leads non-uniform distribution of the density of heat flux, which results in a different temperature distribution along the cavity inter surface. The BCS surface resistance, which depends largely on the temperature, is different in each local inner surface. In this paper, the effect of surface non-uniform resistance on the quality factor has been studied, through the calculation of Q0 in the original definition of it. The results show that it is necessary to consider the non-uniform distribution of magnetic field when the accelerating field is above 20 MV/m for TESLA cavities. Also, the effect of inhomogeneity of residual resistance on the quality factor is discussed. Its distribution barely affects the quality factor.

  6. Effects of warmness and spatial nonuniformity of plasma waveguide on periodic absolute parametric instability

    International Nuclear Information System (INIS)

    Zaki, N.G.; Bekheit, A.H.

    2011-01-01

    The periodic absolute parametric instability (API) of the low-frequency oscillations excited by a monochromatic pumping field of an arbitrary amplitude in a warm 1-D (one-dimensional) nonuniform magnetoactive plasma is investigated. The separation method can be used for solving the two-fluid plasma equations describing the system. By applying this method we were able to determine the frequencies and growth rates of unstable modes and the self-consistent electric field. Plasma electrons are considered to have a thermal velocity. Different solutions for the spatial equation can be obtained the following cases: A) API in a uniform plasma, B) API in a nonuniform plasma. The latter has been studied here for two cases: B.1) the exact harmonic oscillator and B.2) the bounded harmonic oscillator (a bounded plasma). An increment has been found in the build-up of the oscillations, and it has been shown that the spatial nonuniformity of the plasma exerts the stabilizing effect on the parametric instability. A reduced growth rate of API in the warm plasma, in comparison to the cold plasma, is reported. It has also been found that the warmness of the plasma has no effect on the solution of the space part of the problem (only through the separation constant). (authors)

  7. On the burnout in annular channels at non-uniform heat release distribution in length

    International Nuclear Information System (INIS)

    Ornatskij, A.P.; Chernobaj, V.A.; Vasil'ev, A.F.; Struts, G.V.

    1982-01-01

    The effect of axial heat release non-uniformity on the conditions of the burnout in annular channels is investigated. The investigation is carried out in annular channels with different laws of heat flux density distribution by channel length. The heat release non-uniformity coefficient was varied from 4.4 to 10, the pressure from 9.8 to 17.6 MPa, mass rate from 500 to 1700 kg (m 2 xS), liquid temperature (chemically desalted water) at the channel inlet constituted 30-300 deg C. The experiments have been performed at the test bench with a closed circulation circuit. The data obtained testify to the fact that under non-uniform heat release the influence of main operating parameters on the value of critical power is of the same character as under uniform heat release. The character of wall temperature variation by channel length before the burnout is determined by the form of heat supply temperature profile. The temperature maximum is observed in the region lying behind the cross section with maximum heat flux. The conclusion is drawn that the dominant influence on the position of the cross section in which the burnout arises is exerted by the form of heat flux density distribution by length. Independently of this distribution form the burnout developes when the vapour content near the wall reaches a limiting value

  8. Distributed ISAR Subimage Fusion of Nonuniform Rotating Target Based on Matching Fourier Transform.

    Science.gov (United States)

    Li, Yuanyuan; Fu, Yaowen; Zhang, Wenpeng

    2018-06-04

    In real applications, the image quality of the conventional monostatic Inverse Synthetic Aperture Radar (ISAR) for the maneuvering target is subject to the strong fluctuation of Radar Cross Section (RCS), as the target aspect varies enormously. Meanwhile, the maneuvering target introduces nonuniform rotation after translation motion compensation which degrades the imaging performance of the conventional Fourier Transform (FT)-based method in the cross-range dimension. In this paper, a method which combines the distributed ISAR technique and the Matching Fourier Transform (MFT) is proposed to overcome these problems. Firstly, according to the characteristics of the distributed ISAR, the multiple channel echoes of the nonuniform rotation target from different observation angles can be acquired. Then, by applying the MFT to the echo of each channel, the defocused problem of nonuniform rotation target which is inevitable by using the FT-based imaging method can be avoided. Finally, after preprocessing, scaling and rotation of all subimages, the noncoherent fusion image containing all the RCS information in all channels can be obtained. The accumulation coefficients of all subimages are calculated adaptively according to the their image qualities. Simulation and experimental data are used to validate the effectiveness of the proposed approach, and fusion image with improved recognizability can be obtained. Therefore, by using the distributed ISAR technique and MFT, subimages of high-maneuvering target from different observation angles can be obtained. Meanwhile, by employing the adaptive subimage fusion method, the RCS fluctuation can be alleviated and more recognizable final image can be obtained.

  9. The magneto-optical properties of non-uniform graphene nanoribbons

    Science.gov (United States)

    Chung, Hsien-Ching; Lin, Ming-Fa

    2015-03-01

    When synthesizing few-layer graphene nanoribbons (GNRs), non-uniform GNRs would be made simultaneously. Recently, the non-uniform GNRs, which is a stack of two GNRs with unequal widths, have been fabricated by mechanically exfoliated from bulk graphite. Some theoretical predictions have been reported, such as gap opening and transport properties. Under the influence of magnetic fields, magnetic quantization takes place and drastically changes the electronic properties. By tuning the geometric configuration, four categories of magneto-electronic spectra are exhibited. (1) The spectrum is mostly contributed by quasi-Landau levels (QLLs) of monolayer GNRs. (2) The spectrum displays two groups of QLLs, and the non-uniform GNR behaves like a bilayer one. (3) An intermediate category, the spectrum is composite disordered. (4) The spectrum presents the coexistence of monolayer and bilayer spectra. In this work, the magneto-electronic and optical properties for different geometric configurations are given, such as energy dispersions, density of states, wave functions, and magneto-absorption spectra are presented. Furthermore, the transformation between monolayer and bilayer spectra as well as the coexistence of monolayer and bilayer spectra are discussed in detail. One of us (Hsien-Ching Chung) thanks Ming-Hui Chung and Su-Ming Chen for financial support. This work was supported in part by the National Science Council of Taiwan under Grant Number 98-2112-M-006-013-MY4.

  10. Optical tweezers reveal how proteins alter replication

    Science.gov (United States)

    Chaurasiya, Kathy

    Single molecule force spectroscopy is a powerful method that explores the DNA interaction properties of proteins involved in a wide range of fundamental biological processes such as DNA replication, transcription, and repair. We use optical tweezers to capture and stretch a single DNA molecule in the presence of proteins that bind DNA and alter its mechanical properties. We quantitatively characterize the DNA binding mechanisms of proteins in order to provide a detailed understanding of their function. In this work, we focus on proteins involved in replication of Escherichia coli (E. coli ), endogenous eukaryotic retrotransposons Ty3 and LINE-1, and human immunodeficiency virus (HIV). DNA polymerases replicate the entire genome of the cell, and bind both double-stranded DNA (dsDNA) and single-stranded DNA (ssDNA) during DNA replication. The replicative DNA polymerase in the widely-studied model system E. coli is the DNA polymerase III subunit alpha (DNA pol III alpha). We use optical tweezers to determine that UmuD, a protein that regulates bacterial mutagenesis through its interactions with DNA polymerases, specifically disrupts alpha binding to ssDNA. This suggests that UmuD removes alpha from its ssDNA template to allow DNA repair proteins access to the damaged DNA, and to facilitate exchange of the replicative polymerase for an error-prone translesion synthesis (TLS) polymerase that inserts nucleotides opposite the lesions, so that bacterial DNA replication may proceed. This work demonstrates a biophysical mechanism by which E. coli cells tolerate DNA damage. Retroviruses and retrotransposons reproduce by copying their RNA genome into the nuclear DNA of their eukaryotic hosts. Retroelements encode proteins called nucleic acid chaperones, which rearrange nucleic acid secondary structure and are therefore required for successful replication. The chaperone activity of these proteins requires strong binding affinity for both single- and double-stranded nucleic

  11. Spacetime replication of continuous variable quantum information

    International Nuclear Information System (INIS)

    Hayden, Patrick; Nezami, Sepehr; Salton, Grant; Sanders, Barry C

    2016-01-01

    The theory of relativity requires that no information travel faster than light, whereas the unitarity of quantum mechanics ensures that quantum information cannot be cloned. These conditions provide the basic constraints that appear in information replication tasks, which formalize aspects of the behavior of information in relativistic quantum mechanics. In this article, we provide continuous variable (CV) strategies for spacetime quantum information replication that are directly amenable to optical or mechanical implementation. We use a new class of homologically constructed CV quantum error correcting codes to provide efficient solutions for the general case of information replication. As compared to schemes encoding qubits, our CV solution requires half as many shares per encoded system. We also provide an optimized five-mode strategy for replicating quantum information in a particular configuration of four spacetime regions designed not to be reducible to previously performed experiments. For this optimized strategy, we provide detailed encoding and decoding procedures using standard optical apparatus and calculate the recovery fidelity when finite squeezing is used. As such we provide a scheme for experimentally realizing quantum information replication using quantum optics. (paper)

  12. COPI is required for enterovirus 71 replication.

    Directory of Open Access Journals (Sweden)

    Jianmin Wang

    Full Text Available Enterovirus 71 (EV71, a member of the Picornaviridae family, is found in Asian countries where it causes a wide range of human diseases. No effective therapy is available for the treatment of these infections. Picornaviruses undergo RNA replication in association with membranes of infected cells. COPI and COPII have been shown to be involved in the formation of picornavirus-induced vesicles. Replication of several picornaviruses, including poliovirus and Echovirus 11 (EV11, is dependent on COPI or COPII. Here, we report that COPI, but not COPII, is required for EV71 replication. Replication of EV71 was inhibited by brefeldin A and golgicide A, inhibitors of COPI activity. Furthermore, we found EV71 2C protein interacted with COPI subunits by co-immunoprecipitation and GST pull-down assay, indicating that COPI coatomer might be directed to the viral replication complex through viral 2C protein. Additionally, because the pathway is conserved among different species of enteroviruses, it may represent a novel target for antiviral therapies.

  13. Extremal dynamics in random replicator ecosystems

    Energy Technology Data Exchange (ETDEWEB)

    Kärenlampi, Petri P., E-mail: petri.karenlampi@uef.fi

    2015-10-02

    The seminal numerical experiment by Bak and Sneppen (BS) is repeated, along with computations with replicator models, including a greater amount of features. Both types of models do self-organize, and do obey power-law scaling for the size distribution of activity cycles. However species extinction within the replicator models interferes with the BS self-organized critical (SOC) activity. Speciation–extinction dynamics ruins any stationary state which might contain a steady size distribution of activity cycles. The BS-type activity appears as a dissimilar phenomenon in comparison to speciation–extinction dynamics in the replicator system. No criticality is found from the speciation–extinction dynamics. Neither are speciations and extinctions in real biological macroevolution known to contain any diverging distributions, or self-organization towards any critical state. Consequently, biological macroevolution probably is not a self-organized critical phenomenon. - Highlights: • Extremal Dynamics organizes random replicator ecosystems to two phases in fitness space. • Replicator systems show power-law scaling of activity. • Species extinction interferes with Bak–Sneppen type mutation activity. • Speciation–extinction dynamics does not show any critical phase transition. • Biological macroevolution probably is not a self-organized critical phenomenon.

  14. Replication of cultured lung epithelial cells

    International Nuclear Information System (INIS)

    Guzowski, D.; Bienkowski, R.

    1986-01-01

    The authors have investigated the conditions necessary to support replication of lung type 2 epithelial cells in culture. Cells were isolated from mature fetal rabbit lungs (29d gestation) and cultured on feeder layers of mitotically inactivated 3T3 fibroblasts. The epithelial nature of the cells was demonstrated by indirect immunofluorescent staining for keratin and by polyacid dichrome stain. Ultrastructural examination during the first week showed that the cells contained myofilaments, microvilli and lamellar bodies (markers for type 2 cells). The following changes were observed after the first week: increase in cell size; loss of lamellar bodies and appearance of multivesicular bodies; increase in rough endoplasmic reticulum and golgi; increase in tonafilaments and well-defined junctions. General cell morphology was good for up to 10 wk. Cells cultured on plastic surface degenerated after 1 wk. Cell replication was assayed by autoradiography of cultures exposed to ( 3 H)-thymidine and by direct cell counts. The cells did not replicate during the first week; however, between 2-10 wk the cells incorporated the label and went through approximately 6 population doublings. They have demonstrated that lung alveolar epithelial cells can replicate in culture if they are maintained on an appropriate substrate. The coincidence of ability to replicate and loss of markers for differentiation may reflect the dichotomy between growth and differentiation commonly observed in developing systems

  15. The evolutionary ecology of molecular replicators.

    Science.gov (United States)

    Nee, Sean

    2016-08-01

    By reasonable criteria, life on the Earth consists mainly of molecular replicators. These include viruses, transposons, transpovirons, coviruses and many more, with continuous new discoveries like Sputnik Virophage. Their study is inherently multidisciplinary, spanning microbiology, genetics, immunology and evolutionary theory, and the current view is that taking a unified approach has great power and promise. We support this with a new, unified, model of their evolutionary ecology, using contemporary evolutionary theory coupling the Price equation with game theory, studying the consequences of the molecular replicators' promiscuous use of each others' gene products for their natural history and evolutionary ecology. Even at this simple expository level, we can make a firm prediction of a new class of replicators exploiting viruses such as lentiviruses like SIVs, a family which includes HIV: these have been explicitly stated in the primary literature to be non-existent. Closely connected to this departure is the view that multicellular organism immunology is more about the management of chronic infections rather than the elimination of acute ones and new understandings emerging are changing our view of the kind of theatre we ourselves provide for the evolutionary play of molecular replicators. This study adds molecular replicators to bacteria in the emerging field of sociomicrobiology.

  16. Gas-Dynamic Methods to Reduce Gas Flow Nonuniformity from the Annular Frames of Gas Turbine Engines

    Science.gov (United States)

    Kolmakova, D.; Popov, G.

    2018-01-01

    Gas flow nonuniformity is one of the main sources of rotor blade vibrations in the gas turbine engines. Usually, the flow circumferential nonuniformity occurs near the annular frames, located in the flow channel of the engine. This leads to the increased dynamic stresses in blades and consequently to the blade damage. The goal of the research was to find an acceptable method of reducing the level of gas flow nonuniformity. Two different methods were investigated during this research. Thus, this study gives the ideas about methods of improving the flow structure in gas turbine engine. Based on existing conditions (under development or existing engine) it allows the selection of the most suitable method for reducing gas flow nonuniformity.

  17. Numerical Prediction of the Impact of Non-Uniform Leading Edge Coatings On the Aerodynamic Performance of Compressor Airfoils

    National Research Council Canada - National Science Library

    Elmstrom, Michael

    2004-01-01

    A computational fluid dynamic (CFD) investigation is presented that provides predictions of the aerodynamic impact of uniform and non-uniform coatings applied to the leading edge of a compressor airfoil in a cascade. Using a NACA 65(12...

  18. Analysis of the Elastic Large Deflection Behavior for Metal Plates under Nonuniformly Distributed Lateral Pressure with In-Plane Loads

    Directory of Open Access Journals (Sweden)

    Jeom Kee Paik

    2012-01-01

    Full Text Available The Galerkin method is applied to analyze the elastic large deflection behavior of metal plates subject to a combination of in-plane loads such as biaxial loads, edge shear and biaxial inplane bending moments, and uniformly or nonuniformly distributed lateral pressure loads. The motive of the present study was initiated by the fact that metal plates of ships and ship-shaped offshore structures at sea are often subjected to non-uniformly distributed lateral pressure loads arising from cargo or water pressure, together with inplane axial loads or inplane bending moments, but the current practice of the maritime industry usually applies some simplified design methods assuming that the non-uniform pressure distribution in the plates can be replaced by an equivalence of uniform pressure distribution. Applied examples are presented, demonstrating that the current plate design methods of the maritime industry may be inappropriate when the non-uniformity of lateral pressure loads becomes more significant.

  19. On the Time Variation of Dust Extinction and Gas Absorption for Type Ia Supernovae Observed through a Nonuniform Interstellar Medium

    Science.gov (United States)

    Huang, X.; Aldering, G.; Biederman, M.; Herger, B.

    2017-11-01

    For Type Ia supernovae (SNe Ia) observed through a nonuniform interstellar medium (ISM) in its host galaxy, we investigate whether the nonuniformity can cause observable time variations in dust extinction and in gas absorption due to the expansion of the SN photosphere with time. We show that, owing to the steep spectral index of the ISM density power spectrum, sizable density fluctuation amplitudes at the length scale of typical ISM structures (≳ 10 {pc}) will translate to much smaller fluctuations on the scales of an SN photosphere. Therefore, the typical amplitude of time variation due to a nonuniform ISM, of absorption equivalent widths, and of extinction, would be small. As a result, we conclude that nonuniform ISM density should not impact cosmology measurements based on SNe Ia. We apply our predictions based on the ISM density power-law power spectrum to the observations of two highly reddened SNe Ia, SN 2012cu and SN 2014J.

  20. The non-uniformity correction factor for the cylindrical ionization chambers in dosimetry of an HDR 192Ir brachytherapy source

    International Nuclear Information System (INIS)

    Majumdar, Bishnu; Patel, Narayan Prasad; Vijayan, V.

    2006-01-01

    The aim of this study is to derive the non-uniformity correction factor for the two therapy ionization chambers for the dose measurement near the brachytherapy source. The two ionization chambers of 0.6 cc and 0.1 cc volume were used. The measurement in air was performed for distances between 0.8 cm and 20 cm from the source in specially designed measurement jig. The non-uniformity correction factors were derived from the measured values. The experimentally derived factors were compared with the theoretically calculated non-uniformity correction factors and a close agreement was found between these two studies. The experimentally derived non-uniformity correction factor supports the anisotropic theory. (author)