Differential Optical-absorption Spectroscopy (doas) System For Urban Atmospheric-pollution Monitoring

OpenAIRE

Edner, H; Ragnarson, P; Spannare, S; Svanberg, Sune

1993-01-01

We describe a fully computer-controlled differential optical absorption spectroscopy system for atmospheric air pollution monitoring. A receiving optical telescope can sequentially tune in to light beams from a number of distant high-pressure Xe lamp light sources to cover the area of a medium-sized city. A beam-finding servosystem and automatic gain control permit unattended long-time monitoring. Using an astronomical code, we can also search and track celestial sources. Selected wavelength ...

The laser absorption spectrometer - A new remote sensing instrument for atmospheric pollution monitoring

Science.gov (United States)

Shumate, M. S.

1974-01-01

An instrument capable of remotely monitoring trace atmospheric constituents is described. The instrument, called a laser absorption spectrometer, can be operated from an aircraft or spacecraft to measure the concentration of selected gases in three dimensions. This device will be particularly useful for rapid determination of pollutant levels in urban areas.

NF3: UV Absorption Spectrum Temperature Dependence and the Atmospheric and Climate Forcing Implications

Science.gov (United States)

Papadimitriou, Vassileios C.; McGillen, Max R.; Fleming, Eric L.; Jackman, Charles H.; Burkholder, James B.

2013-01-01

Nitrogen trifluoride (NF3) is an atmospherically persistent greenhouse gas that is primarily removed by UV photolysis and reaction with O((sup 1)D) atoms. In this work, the NF3 gas-phase UV absorption spectrum, sigma(delta,T), was measured at 16 wavelengths between 184.95 and 250 nm at temperatures between 212 and 296 K. A significant spectrum temperature dependence was observed in the wavelength region most relevant to atmospheric photolysis (200-220 nm) with a decrease in sigma(210 nm,T) of approximately 45 percent between 296 and 212 K. Atmospheric photolysis rates and global annually averaged lifetimes of NF3 were calculated using the Goddard Space Flight Center 2-D model and the sigma(delta,T) parameterization developed in this work. Including the UV absorption spectrum temperature dependence increased the stratospheric photolysis lifetime from 610 to 762 years and the total global lifetime from 484 to 585 years; the NF3 global warming potentials on the 20-, 100-, and 500-year time horizons increased less than 0.3, 1.1, and 6.5 percent to 13,300, 17,700, and 19,700, respectively.

Research on atmospheric CO2 remote sensing with open-path tunable diode laser absorption spectroscopy and comparison methods

Science.gov (United States)

Xin, Fengxin; Guo, Jinjia; Sun, Jiayun; Li, Jie; Zhao, Chaofang; Liu, Zhishen

2017-06-01

An open-path atmospheric CO2 measurement system was built based on tunable diode laser absorption spectroscopy (TDLAS). The CO2 absorption line near 2 μm was selected, measuring the atmospheric CO2 with direct absorption spectroscopy and carrying on the comparative experiment with multipoint measuring instruments of the open-path. The detection limit of the TDLAS system is 1.94×10-6. The calibration experiment of three AZ-7752 handheld CO2 measuring instruments was carried out with the Los Gatos Research gas analyzer. The consistency of the results was good, and the handheld instrument could be used in the TDLAS system after numerical calibration. With the contrast of three AZ-7752 and their averages, the correlation coefficients are 0.8828, 0.9004, 0.9079, and 0.9393 respectively, which shows that the open-path TDLAS has the best correlation with the average of three AZ-7752 and measures the concentration of atmospheric CO2 accurately. Multipoint measurement provides a convenient comparative method for open-path TDLAS.

Theoretical UV absorption spectra of hydrodynamically escaping O2/CO2-rich exoplanetary atmospheres

International Nuclear Information System (INIS)

Gronoff, G.; Mertens, C. J.; Norman, R. B.; Maggiolo, R.; Wedlund, C. Simon; Bell, J.; Bernard, D.; Parkinson, C. J.; Vidal-Madjar, A.

2014-01-01

Characterizing Earth- and Venus-like exoplanets' atmospheres to determine if they are habitable and how they are evolving (e.g., equilibrium or strong erosion) is a challenge. For that endeavor, a key element is the retrieval of the exospheric temperature, which is a marker of some of the processes occurring in the lower layers and controls a large part of the atmospheric escape. We describe a method to determine the exospheric temperature of an O 2 - and/or CO 2 -rich transiting exoplanet, and we simulate the respective spectra of such a planet in hydrostatic equilibrium and hydrodynamic escape. The observation of hydrodynamically escaping atmospheres in young planets may help constrain and improve our understanding of the evolution of the solar system's terrestrial planets' atmospheres. We use the dependency of the absorption spectra of the O 2 and CO 2 molecules on the temperature to estimate the temperature independently of the total absorption of the planet. Combining two observables (two parts of the UV spectra that have a different temperature dependency) with the model, we are able to determine the thermospheric density profile and temperature. If the slope of the density profile is inconsistent with the temperature, then we infer the hydrodynamic escape. We address the question of the possible biases in the application of the method to future observations, and we show that the flare activity should be cautiously monitored to avoid large biases.

Determination of metals in atmospheric particulates using atomic absorption spectrometry

International Nuclear Information System (INIS)

Alduan, F.A.; Capdevila, C.

1979-01-01

Nineteen trace metals in atmospheric samples have been determined by atomic absorption spectrometry, using a graphite furnace for most elements. Paper filters have been used to collect air samples. The sample preparation procedure involves the removal of organic matter and the conversion of the metals to soluble salts by ashing the filters in an oxygen plasma at 125 deg C for 6 h. and by subsequent dissolution in HN0 3 HCl solution. The sensitivities achieved are in the range of 2,5.10 -5 and 6,3.10 -3 μg/m 3 , for an air volume of 2000 m 3 . (author)

Satellite- and ground-based observations of atmospheric water vapor absorption in the 940 nm region

International Nuclear Information System (INIS)

Albert, P.; Smith, K.M.; Bennartz, R.; Newnham, D.A.; Fischer, J.

2004-01-01

Ground-based measurements of direct absorption of solar radiation between 9000 and 13,000 cm -1 (770-1100 nm) with a spectral resolution of 0.05 cm -1 are compared with line-by-line simulations of atmospheric absorption based on different molecular databases (HITRAN 2000, HITRAN 99, HITRAN 96 and ESA-WVR). Differences between measurements and simulations can be reduced to a great amount by scaling the individual line intensities with spectral and database dependent scaling factors. Scaling factors are calculated for the selected databases using a Marquardt non-linear least-squares fit together with a forward model for 100 cm -1 wide intervals between 10,150 and 11,250 cm -1 as well as for the water vapor absorption channels of the Medium Resolution Imaging Spectrometer (MERIS) onboard the European Space Agency's (ESA) ENVISAT platform and the Modular Optoelectronic Scanner (MOS) on the Indian IRSP-3 platform, developed by the German Aerospace Centre (DLR). For the latter, the scaling coefficients are converted into correction factors for retrieved total columnar water vapor content and used for a comparison of MOS-based retrievals of total columnar atmospheric water vapor above cloud-free land surfaces with radio soundings. The scaling factors determined for 100 cm -1 wide intervals range from 0.85 for the ESA-WVR molecular database to 1.15 for HITRAN 96. The best agreement between measurements and simulations is achieved with HITRAN 99 and HITRAN 2000, respectively, using scaling factors between 0.9 and 1. The effects on the satellite-based retrievals of columnar atmospheric water vapor range from 2% (HITRAN 2000) to 12% (ESA-WVR)

Infrared Absorption by Atmospheric Aerosols in Mexico City during MILAGRO.

Science.gov (United States)

Kelley, K. L.; Mangu, A.; Gaffney, J. S.; Marley, N. A.

2007-12-01

found as colloidal materials in surface and groundwaters (4). Examples of the IR spectra obtained and variance as a function of time at the two sites will be presented. The spectra are taken in Kubelka - Munk format, which also allows the infrared absorption strengths to be evaluated as function of wavelength. The wavelength dependence of the aerosol complex refractive index (m = n + ik) in the infrared spectral region is determined by application of the Kramers Kronig function. The importance of the aerosol absorption in the infrared spectral region to radiative forcing will be discussed. 1. N.A. Marley, J.S. Gaffney, and M.M. Cunningham,Environ. Sci. Technol. 27 2864-2869 (1993). 2. N.A. Marley, J.S. Gaffney, and M.M. Cunningham, Spectroscopy 7 44-53 (1992). 3. J.S. Gaffney and N.A. Marley, Atmospheric Environment, New Directions contribution, 32, 2873-2874 (1998). 4. N.A. Marley, J.S. Gaffney, and K.A. Orlandini, Chapter 7 in Humic/Fulvic Acids and Organic Colloidal Materials in the Environment, ACS Symposium Series 651, American Chemical Society, Washington, D.C., pp. 96-107, 1996. This work was performed as part of the Department of Energy's Megacity Aerosol Experiment - Mexico City (MAX- Mex) under the support of the Atmospheric Science Program. This research was supported by the Office of Science (BER), U.S. Department of Energy, Grant No. DE-FG02-07ER64328.

[Open-path online monitoring of ambient atmospheric CO2 based on laser absorption spectrum].

Science.gov (United States)

He, Ying; Zhang, Yu-Jun; Kan, Rui-Feng; Xia, Hui; Geng, Hui; Ruan, Jun; Wang, Min; Cui, Xiao-Juan; Liu, Wen-Qing

2009-01-01

With the conjunction of tunable diode laser absorption spectroscopy technology (TDLAS) and the open long optical path technology, the system designing scheme of CO2 on-line monitoring based on near infrared tunable diode laser absorption spectroscopy technology was discussed in detail, and the instrument for large-range measurement was set up. By choosing the infrared absorption line of CO2 at 1.57 microm whose line strength is strong and suitable for measurement, the ambient atmospheric CO2 was measured continuously with a 30 s temporal resolution at an suburb site in the autumn of 2007. The diurnal atmospheric variations of CO2 and continuous monitoring results were presented. The results show that the variation in CO2 concentration has an obvious diurnal periodicity in suburb where the air is free of interference and contamination. The general characteristic of diurnal variation is that the concentration is low in the daytime and high at night, so it matches the photosynthesis trend. The instrument can detect gas concentration online with high resolution, high sensitivity, high precision, short response time and many other advantages, the monitoring requires no gas sampling, the calibration is easy, and the detection limit is about 4.2 x 10(-7). It has been proved that the system and measurement project are feasible, so it is an effective method for gas flux continuous online monitoring of large range in ecosystem based on TDLAS technology.

CFCI3 (CFC-11): UV Absorption Spectrum Temperature Dependence Measurements and the Impact on Atmospheric Lifetime and Uncertainty

Science.gov (United States)

Mcgillen, Max R.; Fleming, Eric L.; Jackman, Charles H.; Burkholder, James B.

2014-01-01

CFCl3 (CFC-11) is both an atmospheric ozone-depleting and potent greenhouse gas that is removed primarily via stratospheric UV photolysis. Uncertainty in the temperature dependence of its UV absorption spectrum is a significant contributing factor to the overall uncertainty in its global lifetime and, thus, model calculations of stratospheric ozone recovery and climate change. In this work, the CFC-11 UV absorption spectrum was measured over a range of wavelength (184.95 - 230 nm) and temperature (216 - 296 K). We report a spectrum temperature dependence that is less than currently recommended for use in atmospheric models. The impact on its atmospheric lifetime was quantified using a 2-D model and the spectrum parameterization developed in this work. The obtained global annually averaged lifetime was 58.1 +- 0.7 years (2 sigma uncertainty due solely to the spectrum uncertainty). The lifetime is slightly reduced and the uncertainty significantly reduced from that obtained using current spectrum recommendations

Emission, absorption and group delay of microwaves in the atmosphere in relation to water vapour content over the Indian subcontinent

Science.gov (United States)

Sen, A. K.; Gupta, A. K. D.; Karmakar, P. K.; Barman, S. D.; Bhattacharya, A. B.; Purkait, N.; Gupta, M. K. D.; Sehra, J. S.

1985-01-01

The advent of satellite communication for global coverage has apparently indicated a renewed interest in the studies of radio wave propagation through the atmosphere, in the VHF, UHF and microwave bands. The extensive measurements of atmosphere constituents, dynamics and radio meterological parameters during the Middle Atmosphere Program (MAP) have opened up further the possibilities of studying tropospheric radio wave propagation parameters, relevant to Earth/space link design. The three basic parameters of significance to radio propagation are thermal emission, absorption and group delay of the atmosphere, all of which are controlled largely by the water vapor content in the atmosphere, particular at microwave bands. As good emitters are also good absorbers, the atmospheric emission as well as the absorption attains a maximum at the frequency of 22.235 GHz, which is the peak of the water vapor line. The group delay is practically independent of frequency in the VHF, UHF and microwave bands. However, all three parameters exhibit a similar seasonal dependence originating presumably from the seasonal dependence of the water vapor content. Some of the interesting results obtained from analyses of radiosonde data over the Indian subcontinent collected by the India Meteorological Department is presented.

Atmospheric pre-corrected differential absorption techniques to retrieve columnar water vapor: Application to AVIRIS 91/95 data

Energy Technology Data Exchange (ETDEWEB)

Schlaepfer, D. [Univ. of Zuerich (Switzerland). Dept. of Geography; Borel, C.C. [Los Alamos National Lab., NM (United States); Keller, J. [Paul Scherrer Institut, Villigen (Switzerland)] [and others

1996-03-01

Water vapor is one of the main forces for weather development as well as for mesoscale air transport processes. The monitoring of water vapor is therefore an important aim in remote sensing of the atmosphere. Current operational systems for water vapor detection use primarily the emission in the thermal infrared (AVHRR, GOES, ATSR, Meteosat) or in the microwave radiation bands (DMSP). The disadvantage of current satellite systems is either a coarse spatial (horizontal) resolution ranging from one to tens of kilometers or a limited insight into the lower atmosphere. Imaging spectrometry on the other hand measures total column water vapor contents at a high spatial horizontal resolution and has therefore the potential of filling these gaps. The sensors of the AVIRIS instrument are capable of acquiring hyperspectral data in 224 bands located in the visible and near infrared at 10 run resolution. This data includes information on constituents of the earth`s surface as well as of the atmosphere. The optical measurement of water vapor can be performed using sensor channels located in bands or lines of the absorption spectrum. The AVIRIS sensor has been used to retrieve water vapor and with less accuracy carbon dioxide, oxygen and ozone. To retrieve the water vapor amount, the so called differential absorption technique has been applied. The goal of this technique is to eliminate background factors by taking a ratio between channels within the absorption band and others besides the band. Various rationing methods on the basis of different channels and calculation techniques were developed. The influence of a trace gas of interest on the radiance at the sensor level is usually simulated by using radiative transfer codes. In this study, spectral transmittance and radiance are calculated by MODTRAN3 simulations with the new DISORT option. This work testS the best performing differential absorption techniques for imaging spectrometry of tropospheric water vapor.

Absorption line profiles in a moving atmosphere - A single scattering linear perturbation theory

Science.gov (United States)

Hays, P. B.; Abreu, V. J.

1989-01-01

An integral equation is derived which linearly relates Doppler perturbations in the spectrum of atmospheric absorption features to the wind system which creates them. The perturbation theory is developed using a single scattering model, which is validated against a multiple scattering calculation. The nature and basic properties of the kernels in the integral equation are examined. It is concluded that the kernels are well behaved and that wind velocity profiles can be recovered using standard inversion techniques.

Theoretical UV absorption spectra of hydrodynamically escaping O{sub 2}/CO{sub 2}-rich exoplanetary atmospheres

Energy Technology Data Exchange (ETDEWEB)

Gronoff, G.; Mertens, C. J.; Norman, R. B. [NASA LaRC, Hampton, VA (United States); Maggiolo, R. [BIRA-IASB, Avenue Circulaire 3, 1180 Brussels (Belgium); Wedlund, C. Simon [Aalto University School of Electrical Engineering Department of Radio Science and Engineering, P.O. Box 13000, FI-00076 Aalto (Finland); Bell, J. [National Institute of Aerospace, Hampton, VA (United States); Bernard, D. [IPAG, Grenoble (France); Parkinson, C. J. [University of Michigan, MI (United States); Vidal-Madjar, A., E-mail: Guillaume.P.Gronoff@nasa.gov [Observatoire de Paris, Paris (France)

2014-06-20

Characterizing Earth- and Venus-like exoplanets' atmospheres to determine if they are habitable and how they are evolving (e.g., equilibrium or strong erosion) is a challenge. For that endeavor, a key element is the retrieval of the exospheric temperature, which is a marker of some of the processes occurring in the lower layers and controls a large part of the atmospheric escape. We describe a method to determine the exospheric temperature of an O{sub 2}- and/or CO{sub 2}-rich transiting exoplanet, and we simulate the respective spectra of such a planet in hydrostatic equilibrium and hydrodynamic escape. The observation of hydrodynamically escaping atmospheres in young planets may help constrain and improve our understanding of the evolution of the solar system's terrestrial planets' atmospheres. We use the dependency of the absorption spectra of the O{sub 2} and CO{sub 2} molecules on the temperature to estimate the temperature independently of the total absorption of the planet. Combining two observables (two parts of the UV spectra that have a different temperature dependency) with the model, we are able to determine the thermospheric density profile and temperature. If the slope of the density profile is inconsistent with the temperature, then we infer the hydrodynamic escape. We address the question of the possible biases in the application of the method to future observations, and we show that the flare activity should be cautiously monitored to avoid large biases.

Errors in spectroscopic measurements of SO2 due to nonexponential absorption of laser radiation, with application to the remote monitoring of atmospheric pollutants

International Nuclear Information System (INIS)

Brassington, D.J.; Moncrieff, T.M.; Felton, R.C.; Jolliffe, B.W.; Marx, B.R.; Rowley, W.R.C.; Woods, P.T.

1984-01-01

Methods of measuring the concentration of atmospheric pollutants by laser absorption spectroscopy, such as differential absorption lidar (DIAL) and integrated long-path techniques, all rely on the validity of Beer's exponential absorption law. It is shown here that departures from this law occur if the probing laser has a bandwidth larger than the wavelength scale of structure in the absorption spectrum of the pollutant. A comprehensive experimental and theoretical treatment of the errors resulting from these departures is presented for the particular case of SO 2 monitoring at approx.300 nm. It is shown that the largest error occurs where the initial calibration measurement of absorption cross section is made at low pressure, in which case errors in excess of 5% in the cross section could occur for laser bandwidths >0.01 nm. Atmospheric measurements by DIAL or long-path methods are in most cases affected less, because pressure broadening smears the spectral structure, but when measuring high concentrations errors can exceed 5%

Emission and absorption spectroscopy study of Ar excited states in 13.56 MHz argon plasma operating at sub-atmospheric to atmospheric pressure

Energy Technology Data Exchange (ETDEWEB)

Li, L. [Department of Applied Physics, Research Unit Plasma Technology, Ghent University, Jozef Plateaustraat 22, Ghent B-9000 (Belgium); Nikiforov, A., E-mail: anton.nikiforov@ugent.be [Department of Applied Physics, Research Unit Plasma Technology, Ghent University, Jozef Plateaustraat 22, Ghent B-9000 (Belgium); Institute of Solution Chemistry of the Russian Academy of Science, Academicheskaya St., 1, Ivanovo, 153045 (Russian Federation); Britun, N. [Chimie des Interactions Plasma-Surface (ChIPS), CIRMAP, Universite de Mons, 23 Place du Parc, B-7000 Mons (Belgium); Snyders, R. [Chimie des Interactions Plasma-Surface (ChIPS), CIRMAP, Universite de Mons, 23 Place du Parc, B-7000 Mons (Belgium); Materia Nova Research Centre, Parc Initialis, B-7000 Mons (Belgium); Leys, C. [Department of Applied Physics, Research Unit Plasma Technology, Ghent University, Jozef Plateaustraat 22, Ghent B-9000 (Belgium)

2015-05-01

The densities of metastable and resonant states of Ar atoms are measured in high pressure Ar radio frequency discharge. Resonant absorption spectroscopy for the case of a low pressure spectral lamp and high-pressure plasma absorption lines is implemented for this purpose. The necessary generalizations for the high-pressure resonant absorption method are given. Absolute density of Ar 1s levels obtained at different RF input power and operating pressures are of the order of 10{sup 11} cm{sup −3}, which is in a good agreement with those reported in the literature. The population distribution on the Ar 2p (excited) levels, obtained from the optical emission spectroscopy, reveals strong deviation from thermal equilibrium for these levels in the high-pressure case. The generation of the Ar excited states in the studied discharges is compared to the previously reported results. - Highlights: • Strong non-equilibrium distribution of Ar 2p levels is observed. • The absolute number density of non-radiative Ar 1s states is determined by the easier and low cost spectral-lamp absorption method. • The modified absorption theory of Mitchell and Zemanski was used to obtain the absolute number density of Ar 1s states at high pressure. • The developed RF source with 5 cm long gap can be a possible alternative to micro-plasma working in Ar at atmospheric pressure.

Absorption cooling sources atmospheric emissions decrease by implementation of simple algorithm for limiting temperature of cooling water

Science.gov (United States)

Wojdyga, Krzysztof; Malicki, Marcin

2017-11-01

Constant strive to improve the energy efficiency forces carrying out activities aimed at reduction of energy consumption hence decreasing amount of contamination emissions to atmosphere. Cooling demand, both for air-conditioning and process cooling, plays an increasingly important role in the balance of Polish electricity generation and distribution system in summer. During recent years' demand for electricity during summer months has been steadily and significantly increasing leading to deficits of energy availability during particularly hot periods. This causes growing importance and interest in trigeneration power generation sources and heat recovery systems producing chilled water. Key component of such system is thermally driven chiller, mostly absorption, based on lithium-bromide and water mixture. Absorption cooling systems also exist in Poland as stand-alone systems, supplied with heating from various sources, generated solely for them or recovered as waste or useless energy. The publication presents a simple algorithm, designed to reduce the amount of heat for the supply of absorption chillers producing chilled water for the purposes of air conditioning by reducing the temperature of the cooling water, and its impact on decreasing emissions of harmful substances into the atmosphere. Scale of environmental advantages has been rated for specific sources what enabled evaluation and estimation of simple algorithm implementation to sources existing nationally.

The water vapour self-continuum absorption in the infrared atmospheric windows: new laser measurements near 3.3 and 2.0 µm

Science.gov (United States)

Lechevallier, Loic; Vasilchenko, Semen; Grilli, Roberto; Mondelain, Didier; Romanini, Daniele; Campargue, Alain

2018-04-01

The amplitude, the temperature dependence, and the physical origin of the water vapour absorption continuum are a long-standing issue in molecular spectroscopy with direct impact in atmospheric and planetary sciences. In recent years, we have determined the self-continuum absorption of water vapour at different spectral points of the atmospheric windows at 4.0, 2.1, 1.6, and 1.25 µm, by highly sensitive cavity-enhanced laser techniques. These accurate experimental constraints have been used to adjust the last version (3.2) of the semi-empirical MT_CKD model (Mlawer-Tobin_Clough-Kneizys-Davies), which is widely incorporated in atmospheric radiative-transfer codes. In the present work, the self-continuum cross-sections, CS, are newly determined at 3.3 µm (3007 cm-1) and 2.0 µm (5000 cm-1) by optical-feedback-cavity enhanced absorption spectroscopy (OFCEAS) and cavity ring-down spectroscopy (CRDS), respectively. These new data allow extending the spectral coverage of the 4.0 and 2.1 µm windows, respectively, and testing the recently released 3.2 version of the MT_CKD continuum. By considering high temperature literature data together with our data, the temperature dependence of the self-continuum is also obtained.

Atmospheric Pre-Corrected Differential Absorption Techniques to Retrieve Columnar Water Vapor: Application to AVIRIS 91/95 Data

Science.gov (United States)

Schlaepfer, Daniel; Borel, Christoph C.; Keller, Johannes; Itten, Klaus I.

1996-01-01

Water vapor is one of the main forces for weather development as well as for mesoscale air transport processes. The monitoring of water vapor is therefore an important aim in remote sensing of the atmosphere. Current operational systems for water vapor detection use primarily the emission in the thermal infrared (AVHRR, GOES, ATSR, Meteosat) or in the microwave radiation bands (DMSP). The disadvantage of current satellite systems is either a coarse spatial (horizontal) resolution ranging from one to tens of kilometers or a limited insight into the lower atmosphere. Imaging spectrometry on the other hand measures total column water vapor contents at a high spatial horizontal resolution and has therefore the potential of filling these gaps. The sensors of the AVIRIS instrument are capable of acquiring hyperspectral data in 224 bands located in the visible and near infrared at 10 nm resolution. This data includes the information on constituents of the earth's surface as well as of the atmosphere. The optical measurement of water vapor can be performed using sensor channels located in bands or lines of the absorption spectrum. The AVIRIS sensor has been used to retrieve water vapor and with less accuracy carbon dioxide, oxygen and ozone. To retrieve the water vapor amount, the so called differential absorption technique has been applied. The goal of this technique is to eliminate background factors by taking a ratio between channels within the absorption band and others besides the band. Various ratioing methods on the basis of different channels and calculation techniques were developed. The influence of a trace gas of interest on the radiance at the sensor level is usually simulated by using radiative transfer codes. In this study, the spectral transmittance and radiance are calculated by MODTRAN3 simulations with the new DISORT option. The objective of this work is to test the best performing differential absorption techniques for imaging spectrometry of

Method and apparatus for simulating atomospheric absorption of solar energy due to water vapor and CO.sub.2

Science.gov (United States)

Sopori, Bhushan L.

1995-01-01

A method and apparatus for improving the accuracy of the simulation of sunlight reaching the earth's surface includes a relatively small heated chamber having an optical inlet and an optical outlet, the chamber having a cavity that can be filled with a heated stream of CO.sub.2 and water vapor. A simulated beam comprising infrared and near infrared light can be directed through the chamber cavity containing the CO.sub.2 and water vapor, whereby the spectral characteristics of the beam are altered so that the output beam from the chamber contains wavelength bands that accurately replicate atmospheric absorption of solar energy due to atmospheric CO.sub.2 and moisture.

The water vapour self-continuum absorption in the infrared atmospheric windows: new laser measurements near 3.3 and 2.0 µm

Directory of Open Access Journals (Sweden)

L. Lechevallier

2018-04-01

Full Text Available The amplitude, the temperature dependence, and the physical origin of the water vapour absorption continuum are a long-standing issue in molecular spectroscopy with direct impact in atmospheric and planetary sciences. In recent years, we have determined the self-continuum absorption of water vapour at different spectral points of the atmospheric windows at 4.0, 2.1, 1.6, and 1.25 µm, by highly sensitive cavity-enhanced laser techniques. These accurate experimental constraints have been used to adjust the last version (3.2 of the semi-empirical MT_CKD model (Mlawer-Tobin_Clough-Kneizys-Davies, which is widely incorporated in atmospheric radiative-transfer codes. In the present work, the self-continuum cross-sections, CS, are newly determined at 3.3 µm (3007 cm−1 and 2.0 µm (5000 cm−1 by optical-feedback-cavity enhanced absorption spectroscopy (OFCEAS and cavity ring-down spectroscopy (CRDS, respectively. These new data allow extending the spectral coverage of the 4.0 and 2.1 µm windows, respectively, and testing the recently released 3.2 version of the MT_CKD continuum. By considering high temperature literature data together with our data, the temperature dependence of the self-continuum is also obtained.

Enhanced Water Vapor Absorption within Tropospheric Clouds: A Partial Explanation for Anomalous Absorption

Science.gov (United States)

Crisp, David; Zuffada, Cinzia

1996-01-01

Comparisons between solar flux measurements and predictions obtained from theoretical radiative transfer models indicate that most of these models underestimate the globally averaged solar energy absorbed by cloudy atmospheres by up to 25Wm&sup-2;.The origin of this anomalous absorption has not yet been established, but it has been attributed to a variety of sources including oversimplified or missing physical processes in the existing models, uncertainties in the input data, and even measurement errors. We used a sophisticated atmospheric radiative transfer model to provide improved constraints on the physical processes that contribute to the absorption of solar radiation by Earth's atmosphere. The results are described herein.

Visibility degradation and light scattering/absorption due to aerosol particles in urban/suburban atmosphere of Irbid, Jordan

International Nuclear Information System (INIS)

Hamasha, K. M.; University of Tabuk, Tabuk

2010-01-01

Visible light scattering and absorption patterns were measured using a photoacoustic instrument at different locations in Irbid city. Measurments were perfoemed during the intervals 1-9 August 2007 and 7-13 October 2007 at the city center site (Palestine street) and the southern site (University Circle), respectively. The city center site is impacted by local urban and regional aerosols. The southern site is dominated by regional aerosols. Data from both sampling sites showed variety of diurnal light absorption and scattering patterns. During most of the measurement days, the highest light absorption peaks appeared in the morning, 7:00 - 9:30 AM, whereas the highest light scattering peaks appeared later, 9:30 - 11:00 AM. The earlier light absorption peaks are likely attributed to the elevated black carbon vehicular emission during the heavy traffic hours (rush hours) whereas, the later light scattering peaks are attributed to secondary aerosols generted in the atmosphere through photochmical reactions. The southern site (University Circle) exhibited a higher light scattering and a lower light absorption contribution to the light extinction, leading to a better visibility compared to the City Center site. The visibility is averaged at 44 km and 115 km at the city center site and southern site, respectively. (author).

A Fourier transform spectrometer for visible and near ultra-violet measurements of atmospheric absorption

Science.gov (United States)

Parsons, C. L.; Gerlach, J. C.; Whitehurst, M.

1982-01-01

The development of a prototype, ground-based, Sun-pointed Michelson interferometric spectrometer is described. Its intended use is to measure the atmospheric amount of various gases which absorb in the near-infrared, visible, and near-ultraviolet portions of the electromagnetic spectrum. Preliminary spectra which contain the alpha, 0.8 micrometer, and rho sigma tau water vapor absorption bands in the near-infrared are presented to indicate the present capability of the system. Ultimately, the spectrometer can be used to explore the feasible applications of Fourier transform spectroscopy in the ultraviolet where grating spectrometers were used exclusively.

Absorption of Sunlight by Water Vapor in Cloudy Conditions: A Partial Explanation for the Cloud Absorption Anomaly

Science.gov (United States)

Crisp, D.

1997-01-01

The atmospheric radiative transfer algorithms used in most global general circulation models underestimate the globally-averaged solar energy absorbed by cloudy atmospheres by up to 25 W/sq m. The origin of this anomalous absorption is not yet known, but it has been attributed to a variety of sources including oversimplified or missing physical processes in these models, uncertainties in the input data, and even measurement errors. Here, a sophisticated atmospheric radiative transfer model was used to provide a more comprehensive description of the physical processes that contribute to the absorption of solar radiation by the Earth's atmosphere. We found that the amount of sunlight absorbed by a cloudy atmosphere is inversely proportional to the solar zenith angle and the cloud top height, and directly proportional to the cloud optical depth and the water vapor concentration within the clouds. Atmospheres with saturated, optically-thick, low clouds absorbed about 12 W/sq m more than clear atmospheres. This accounts for about 1/2 to 1/3 of the anomalous ab- sorption. Atmospheres with optically thick middle and high clouds usually absorb less than clear atmospheres. Because water vapor is concentrated within and below the cloud tops, this absorber is most effective at small solar zenith angles. An additional absorber that is distributed at or above the cloud tops is needed to produce the amplitude and zenith angle dependence of the observed anomalous absorption.

A SURVEY OF ALKALI LINE ABSORPTION IN EXOPLANETARY ATMOSPHERES

International Nuclear Information System (INIS)

Jensen, Adam G.; Redfield, Seth; Endl, Michael; Cochran, William D.; Koesterke, Lars; Barman, Travis S.

2011-01-01

We obtained over 90 hr of spectroscopic observations of four exoplanetary systems with the Hobby-Eberly Telescope. Observations were taken in transit and out of transit, and we analyzed the differenced spectra—i.e., the transmission spectra—to inspect it for absorption at the wavelengths of the neutral sodium (Na I) doublet at λλ5889, 5895 and neutral potassium (K I) at λ7698. We used the transmission spectrum at Ca I λ6122—which shows strong stellar absorption but is not an alkali metal resonance line that we expect to show significant absorption in these atmospheres—as a control line to examine our measurements for systematic errors. We use an empirical Monte Carlo method to quantify these systematic errors. In a reanalysis of the same data set using a reduction and analysis pipeline that was derived independently, we confirm the previously seen Na I absorption in HD 189733b at a level of (– 5.26 ± 1.69) × 10 –4 (the average value over a 12 Å integration band to be consistent with previous authors). Additionally, we tentatively confirm the Na I absorption seen in HD 209458b (independently by multiple authors) at a level of (– 2.63 ± 0.81) × 10 –4 , though the interpretation is less clear. Furthermore, we find Na I absorption of (– 3.16 ± 2.06) × 10 –4 at <3σ in HD 149026b; features apparent in the transmission spectrum are consistent with real absorption and indicate this may be a good target for future observations to confirm. No other results (Na I in HD 147506b and Ca I and K I in all four targets) are significant to ≥3σ, although we observe some features that we argue are primarily artifacts.

Absorption of Sunlight by Water Vapor in Cloudy Conditions: A Partial Explaination for the Cloud Absorption Anomaly

Science.gov (United States)

Crisp, D.

1996-01-01

The atmospheric radiative transfer algorithms used in most global general circulation models underestimate the globally-averaged solar energy absorbed by cloudy atmospheres by up to 25 Wm(sup -2)...Here, a sophisticated atmospheric radiative transfer model was used to provide a more comprehensive description of the physical processes that contribute to the absorption of solar radiation by the Earth's atmosphere.

Atmospheric lifetimes, infrared absorption spectra, radiative forcings and global warming potentials of NF3 and CF3CF2Cl (CFC-115

Directory of Open Access Journals (Sweden)

A. Totterdill

2016-09-01

Full Text Available Fluorinated compounds such as NF3 and C2F5Cl (CFC-115 are characterised by very large global warming potentials (GWPs, which result from extremely long atmospheric lifetimes and strong infrared absorptions in the atmospheric window. In this study we have experimentally determined the infrared absorption cross sections of NF3 and CFC-115, calculated the radiative forcing and efficiency using two radiative transfer models and identified the effect of clouds and stratospheric adjustment. The infrared cross sections are within 10 % of previous measurements for CFC-115 but are found to be somewhat larger than previous estimates for NF3, leading to a radiative efficiency for NF3 that is 25 % larger than that quoted in the Intergovernmental Panel on Climate Change Fifth Assessment Report. A whole atmosphere chemistry–climate model was used to determine the atmospheric lifetimes of NF3 and CFC-115 to be (509 ± 21 years and (492 ± 22 years, respectively. The GWPs for NF3 are estimated to be 15 600, 19 700 and 19 700 over 20, 100 and 500 years, respectively. Similarly, the GWPs for CFC-115 are 6030, 7570 and 7480 over 20, 100 and 500 years, respectively.

Differential absorption lidar measurements of atmospheric water vapor using a pseudonoise code modulated AlGaAs laser. Thesis

Science.gov (United States)

Rall, Jonathan A. R.

1994-01-01

Lidar measurements using pseudonoise code modulated AlGaAs lasers are reported. Horizontal path lidar measurements were made at night to terrestrial targets at ranges of 5 and 13 km with 35 mW of average power and integration times of one second. Cloud and aerosol lidar measurements were made to thin cirrus clouds at 13 km altitude with Rayleigh (molecular) backscatter evident up to 9 km. Average transmitter power was 35 mW and measurement integration time was 20 minutes. An AlGaAs laser was used to characterize spectral properties of water vapor absorption lines at 811.617, 816.024, and 815.769 nm in a multipass absorption cell using derivative spectroscopy techniques. Frequency locking of an AlGaAs laser to a water vapor absorption line was achieved with a laser center frequency stability measured to better than one-fifth of the water vapor Doppler linewidth over several minutes. Differential absorption lidar measurements of atmospheric water vapor were made in both integrated path and range-resolved modes using an externally modulated AlGaAs laser. Mean water vapor number density was estimated from both integrated path and range-resolved DIAL measurements and agreed with measured humidity values to within 6.5 percent and 20 percent, respectively. Error sources were identified and their effects on estimates of water vapor number density calculated.

Multitracer study on absorption of radionuclides in atmosphere-plant system

International Nuclear Information System (INIS)

Ambe, Shizuko; Shinonaga, Taeko; Watanabe, Tadakazu; Yamaguchi, Isamu

1996-01-01

Direct absorption of atmospheric radionuclides by soybean plants was studied using a radioactive multitracer consisting of radionuclides of Sc, Mn, Co, As, Se, Rb, Sr, Y, Eu, Gd, Yb, Hf, Re, and Ir. Soybean seedlings were cultivated at 23degC in a box where multitracer-adsorbed cellulose powders were floating in air. After 28-49 day-cultivation, the plants were harvested and divided into beans (seeds and pods), leaves, stems (inside and outside), and roots. Beans or leaves originating from the same node were collected together. After washing with dilute HCl solution and distilled water, they were dried and then subjected to γ-ray measurement. It was estimated that about 0.2 % of the multitracer was absorbed by the soybean plant, of which 80 % was found in the leaves, and 10 % each in beans and stems. The relative amounts of elements in the beans, leaves, and stems markedly differed depending on the element. Among the elements, Se * was greatly accumulated in the beans, leaves, and stems. Cobalt * , Se * , and Rb * were dominant in the beans, especially in the edible part of seeds. Relative amounts of Mn * , As * , Sr * , and Re * in the seeds were very small. It is noticeable that these nuclides were found in the seeds, though they were not physically exposed to the multitracer-adsorbed cellulose powders during growth. The radioactivities of Sc * , Mn * , Co * , As * , Se * , Rb * , Sr * , Y * , Eu * , Gd * , Yb * , Hf * , Re * , and Ir * were observed for the leaves. Brown leaves accumulated greater amounts of radionuclides than green ones. Main nuclides found in the stem were Sc * , Co * , Se * , Y * , Eu * , Gd * , Yb * , Hf * , and Ir * , a larger part of them on the outside. Trace amounts of Co * , Se * , and Rb * were detected in the roots. Little leakage of the multitracer into the soil was observed. These results indicate that various radionuclides in the atmosphere were directly absorbed through soybean leaves and then transported to the edible part

Accurate Laser Measurements of the Water Vapor Self-Continuum Absorption in Four Near Infrared Atmospheric Windows. a Test of the MT_CKD Model.

Science.gov (United States)

Campargue, Alain; Kassi, Samir; Mondelain, Didier; Romanini, Daniele; Lechevallier, Loïc; Vasilchenko, Semyon

2017-06-01

The semi empirical MT_CKD model of the absorption continuum of water vapor is widely used in atmospheric radiative transfer codes of the atmosphere of Earth and exoplanets but lacks of experimental validation in the atmospheric windows. Recent laboratory measurements by Fourier transform Spectroscopy have led to self-continuum cross-sections much larger than the MT_CKD values in the near infrared transparency windows. In the present work, we report on accurate water vapor absorption continuum measurements by Cavity Ring Down Spectroscopy (CRDS) and Optical-Feedback-Cavity Enhanced Laser Spectroscopy (OF-CEAS) at selected spectral points of the transparency windows centered around 4.0, 2.1 and 1.25 μm. The temperature dependence of the absorption continuum at 4.38 μm and 3.32 μm is measured in the 23-39 °C range. The self-continuum water vapor absorption is derived either from the baseline variation of spectra recorded for a series of pressure values over a small spectral interval or from baseline monitoring at fixed laser frequency, during pressure ramps. In order to avoid possible bias approaching the water saturation pressure, the maximum pressure value was limited to about 16 Torr, corresponding to a 75% humidity rate. After subtraction of the local water monomer lines contribution, self-continuum cross-sections, C_{S}, were determined with a few % accuracy from the pressure squared dependence of the spectra base line level. Together with our previous CRDS and OF-CEAS measurements in the 2.1 and 1.6 μm windows, the derived water vapor self-continuum provides a unique set of water vapor self-continuum cross-sections for a test of the MT_CKD model in four transparency windows. Although showing some important deviations of the absolute values (up to a factor of 4 at the center of the 2.1 μm window), our accurate measurements validate the overall frequency dependence of the MT_CKD2.8 model.

High resolution and high precision absorption spectroscopy using high finesse cavities: application to the study of molecules with atmospheric interest; Cavites de haute finesse pour la spectroscopie d'absorption haute sensibilite et haute precision: application a l'etude de molecules d'interet atmospherique

Energy Technology Data Exchange (ETDEWEB)

Motto-Ros, V

2005-12-15

High finesse cavities are used to measure very weak absorption features. Two different methodologies are investigated and applied to the study of molecules with atmospheric interest. First, Continuous Wave - Cavity Ring Down Spectroscopy (CW-CRDS) is used to study the atmospheric spectra of water vapour in the near infrared range. These measurements are performed for temperature and pressure of atmospheric relevance for DIAL applications (Differential Absorption Lidar). This study, financed by the European Space Agency (ESA), goes with the WALES mission (Water Vapour Lidar Experiment in Space). The experimental setup was conceived in order to control pressure, temperature and relative humidity conditions. A particular attention is done to characterize and describe the spectrometer. Then, measurements of red Oxygen B band are performed to demonstrate the huge performance of Optical Feedback Cavity Enhanced Absorption Spectroscopy (OF-CEAS). The desired optical feedback is obtained by light injection into the high finesse cavity through a glass plate placed inside the cavity and closed to the Brewster angle. We show a measurement dynamical range of 5 orders of magnitude (10{sup -5} to 10{sup -10} /cm) and a sensitivity of 10{sup -10} /cm/{radical} Hz. Also, sampling absorption spectra by the super linear cavity frequency comb allows very precise frequency measurements. This is demonstrated by the determination of Oxygen pressure shifts with an absolute accuracy of around 5 x 10{sup -5} cm{sup -1}/atm. To our knowledge, we provide the highest accuracy ever reported for this parameter. (author)

Absorption of acoustic waves by sunspots. II - Resonance absorption in axisymmetric fibril models

Science.gov (United States)

Rosenthal, C. S.

1992-01-01

Analytical calculations of acoustic waves scattered by sunspots which concentrate on the absorption at the magnetohydrodynamic Alfven resonance are extended to the case of a flux-tube embedded in a uniform atmosphere. The model is based on a flux-tubes of varying radius that are highly structured, translationally invariant, and axisymmetric. The absorbed fractional energy is determined for different flux-densities and subphotospheric locations with attention given to the effects of twist. When the flux is highly concentrated into annuli efficient absorption is possible even when the mean magnetic flux density is low. The model demonstrates low absorption at low azimuthal orders even in the presence of twist which generally increases the range of wave numbers over which efficient absorption can occur. Resonance absorption is concluded to be an efficient mechanism in monolithic sunspots, fibril sunspots, and plage fields.

Models for infrared atmospheric radiation

Science.gov (United States)

Tiwari, S. N.

1976-01-01

Line and band models for infrared spectral absorption are discussed. Radiative transmittance and integrated absorptance of Lorentz, Doppler, and voigt line profiles were compared for a range of parameters. It was found that, for the intermediate path lengths, the combined Lorentz-Doppler (Voigt) profile is essential in calculating the atmospheric transmittance. Narrow band model relations for absorptance were used to develop exact formulations for total absorption by four wide band models. Several continuous correlations for the absorption of a wide band model were compared with the numerical solutions of the wide band models. By employing the line-by-line and quasi-random band model formulations, computational procedures were developed for evaluating transmittance and upwelling atmospheric radiance. Homogeneous path transmittances were calculated for selected bands of CO, CO2, and N2O and compared with experimental measurements. The upwelling radiance and signal change in the wave number interval of the CO fundamental band were also calculated.

Temperature Dependences of Mechanisms Responsible for the Water-Vapor Continuum Absorption

Science.gov (United States)

Ma, Qiancheng

2014-01-01

The water-vapor continuum absorption plays an important role in the radiative balance in the Earth's atmosphere. It has been experimentally shown that for ambient atmospheric conditions, the continuum absorption scales quadratically with the H2O number density and has a strong, negative temperature dependence (T dependence). Over the years, there have been three different theoretical mechanisms postulated: far-wings of allowed transition lines, water dimers, and collision-induced absorption. The first mechanism proposed was the accumulation of absorptions from the far-wings of the strong allowed transition lines. Later, absorption by water dimers was proposed, and this mechanism provides a qualitative explanation for the continuum characters mentioned above. Despite the improvements in experimental data, at present there is no consensus on which mechanism is primarily responsible for the continuum absorption.

Collision-Induced Infrared Absorption by Hydrogen-Helium gas mixtures at Thousands of Kelvin

Science.gov (United States)

Abel, Martin; Frommhold, Lothar; Li, Xiaoping; Hunt, Katharine L. C.

2010-10-01

The interaction-induced absorption by collisional pairs of H2 molecules is an important opacity source in the atmospheres of the outer planets and cool stars ^[1]. The emission spectra of cool white dwarf stars differ significantly in the infrared from the expected blackbody spectra of their cores, which is largely due to absorption by collisional H2--H2, H2--He, and H2--H complexes in the stellar atmospheres. Using quantum-chemical methods we compute the atmospheric absorption from hundreds to thousands of kelvin ^[2]. Laboratory measurements of interaction-induced absorption spectra by H2 pairs exist only at room temperature and below. We show that our results reproduce these measurements closely ^[2], so that our computational data permit reliable modeling of stellar atmosphere opacities even for the higher temperatures ^[2]. [1] L. Frommhold, Collision-Induced Absorption in Gases, Cambridge University Press, Cambridge, New York, 1993 and 2006 [2] Xiaoping Li, Katharine L. C. Hunt, Fei Wang, Martin Abel, and Lothar Frommhold, ``Collision-Induced Infrared Absorption by Molecular Hydrogen Pairs at Thousands of Kelvin'', International Journal of Spectroscopy, vol. 2010, Article ID 371201, 11 pages, 2010. doi: 10.1155/2010/371201

ATMOSPHERIC RETRIEVAL FOR SUPER-EARTHS: UNIQUELY CONSTRAINING THE ATMOSPHERIC COMPOSITION WITH TRANSMISSION SPECTROSCOPY

International Nuclear Information System (INIS)

Benneke, Bjoern; Seager, Sara

2012-01-01

We present a retrieval method based on Bayesian analysis to infer the atmospheric compositions and surface or cloud-top pressures from transmission spectra of exoplanets with general compositions. In this study, we identify what can unambiguously be determined about the atmospheres of exoplanets from their transmission spectra by applying the retrieval method to synthetic observations of the super-Earth GJ 1214b. Our approach to inferring constraints on atmospheric parameters is to compute their joint and marginal posterior probability distributions using the Markov Chain Monte Carlo technique in a parallel tempering scheme. A new atmospheric parameterization is introduced that is applicable to general atmospheres in which the main constituent is not known a priori and clouds may be present. Our main finding is that a unique constraint of the mixing ratios of the absorbers and two spectrally inactive gases (such as N 2 and primordial H 2 + He) is possible if the observations are sufficient to quantify both (1) the broadband transit depths in at least one absorption feature for each absorber and (2) the slope and strength of the molecular Rayleigh scattering signature. A second finding is that the surface pressure or cloud-top pressure can be quantified if a surface or cloud deck is present at low optical depth. A third finding is that the mean molecular mass can be constrained by measuring either the Rayleigh scattering slope or the shapes of the absorption features, thus enabling one to distinguish between cloudy hydrogen-rich atmospheres and high mean molecular mass atmospheres. We conclude, however, that without the signature of molecular Rayleigh scattering—even with robustly detected infrared absorption features (>10σ)—there is no reliable way to tell from the transmission spectrum whether the absorber is a main constituent of the atmosphere or just a minor species with a mixing ratio of X abs < 0.1%. The retrieval method leads us to a conceptual picture

The greenhouse effect of planetary atmospheres

International Nuclear Information System (INIS)

Kondratyev, K.Ya.; Moskalenko, N.I.

1980-01-01

The greenhouse effect of the atmosphere is the main factor of possible climate changes of anthropogenic origin. The growing pollution of the atmosphere leads to an increase of the concentration of various gaseous components. Of great importance is also the consideration of the aerosols. All the gaseous components, as well as aerosols, have the absorption bands in the IR spectral range. The traditional attention to the problem of the CO 2 contribution to the greenhouse effect has somewhat overshadowed the significance of the different components. The data characterizing the significance of the different components of the greenhouse effect are considered. The results of studying the absorption spectra of methane, nitrous oxides, sulphuric gas, ammonia, nitric-acid vapours and other components are discussed. The assessments of their contribution to the greenhouse effect are given. The important role of the small-size fraction of the atmospheric aerosols as a factor of the greenhouse effect is discussed. Both the analysis of the causes of the Earth's climate variability and the relevant investigation of the atmospheric greenhouse effect determine the expediency of analysing the conditions of the greenhouse effect formation on other planets. Laboratory studies of the IR absorption spectra of synthetic CO 2 atmospheres were carried out. Some results from these studies are discussed. (author)

High resolution and high precision absorption spectroscopy using high finesse cavities: application to the study of molecules with atmospheric interest; Cavites de haute finesse pour la spectroscopie d'absorption haute sensibilite et haute precision: application a l'etude de molecules d'interet atmospherique

Energy Technology Data Exchange (ETDEWEB)

Motto-Ros, V.

2005-12-15

High finesse cavities are used to measure very weak absorption features. Two different methodologies are investigated and applied to the study of molecules with atmospheric interest. First, Continuous Wave - Cavity Ring Down Spectroscopy (CW-CRDS) is used to study the atmospheric spectra of water vapour in the near infrared range. These measurements are performed for temperature and pressure of atmospheric relevance for DIAL applications (Differential Absorption Lidar). This study, financed by the European Space Agency (ESA), goes with the WALES mission (Water Vapour Lidar Experiment in Space). The experimental setup was conceived in order to control pressure, temperature and relative humidity conditions. A particular attention is done to characterize and describe the spectrometer. Then, measurements of red Oxygen B band are performed to demonstrate the huge performance of Optical Feedback Cavity Enhanced Absorption Spectroscopy (OF-CEAS). The desired optical feedback is obtained by light injection into the high finesse cavity through a glass plate placed inside the cavity and closed to the Brewster angle. We show a measurement dynamical range of 5 orders of magnitude (10{sup -5} to 10{sup -10} /cm) and a sensitivity of 10{sup -10} /cm/{radical} Hz. Also, sampling absorption spectra by the super linear cavity frequency comb allows very precise frequency measurements. This is demonstrated by the determination of Oxygen pressure shifts with an absolute accuracy of around 5 x 10{sup -5} cm{sup -1}/atm. To our knowledge, we provide the highest accuracy ever reported for this parameter. (author)

Analysis of the atmospheric upward radiation in low latitude area

Science.gov (United States)

Li, Haiying; Wu, Zhensen; Lin, Leke; Lu, Changsheng

2016-10-01

Remote sensing using THz wave has irreplaceable advantage comparing to the microwave and the infrared waves, and study on the THz remote sensing become more and more popular in recent years. The major applications of the remote sensing in THz wavelengths are the retrieval of the atmospheric parameters and the microphysical information of the ice cloud. The remote sensing of the atmosphere is based on the radiation of THz wave along the earth-space path of which the most significant part is the upward radiation of the atmosphere. The upward radiation of the atmosphere in sunny day in the low latitude area is computed and analyzed in this paper. The absorption of THz wave by the atmosphere is calculated using the formulations illustrated in the Recommendation ITU-R P.676 to save machine hour, the frequency range is then restricted below 1THz. The frequencies used for the retrieval of atmospheric parameters such as temperature and water content are usually a few hundred GHz, at the lower end of THz wavelengths, so this frequency range is sufficient. The radiation contribution of every atmospheric layer for typical frequencies such as absorption window frequencies and peak frequencies are analyzed. Results show that at frequencies which absorption is severe, information about lower atmosphere cannot reach the receiver onboard a satellite or other high platforms due to the strong absorption along the path.

Theoretical and experimental study on broadband terahertz atmospheric transmission characteristics

International Nuclear Information System (INIS)

Guo Shi-Bei; Zhong Kai; Wang Mao-Rong; Liu Chu; Xu De-Gang; Yao Jian-Quan; Xiao Yong; Wang Wen-Peng

2017-01-01

Broadband terahertz (THz) atmospheric transmission characteristics from 0 to 8 THz are theoretically simulated based on a standard Van Vleck–Weisskopf line shape, considering 1696 water absorption lines and 298 oxygen absorption lines. The influences of humidity, temperature, and pressure on the THz atmospheric absorption are analyzed and experimentally verified with a Fourier transform infrared spectrometer (FTIR) system, showing good consistency. The investigation and evaluation on high-frequency atmospheric windows are good supplements to existing data in the low-frequency range and lay the foundation for aircraft-based high-altitude applications of THz communication and radar. (paper)

Atmospheric Pre-Corrected Differential Absorption Techniques to Retrieve Columnar Water Vapor: Theory and Simulations

Science.gov (United States)

Borel, Christoph C.; Schlaepfer, Daniel

1996-01-01

Two different approaches exist to retrieve columnar water vapor from imaging spectrometer data: (1) Differential absorption techniques based on: (a) Narrow-Wide (N/W) ratio between overlapping spectrally wide and narrow channels; (b) Continuum Interpolated Band Ratio (CIBR) between a measurement channel and the weighted sum of two reference channels. (2) Non-linear fitting techniques which are based on spectral radiative transfer calculations. The advantage of the first approach is computational speed and of the second, improved retrieval accuracy. Our goal was to improve the accuracy of the first technique using physics based on radiative transfer. Using a modified version of the Duntley equation, we derived an "Atmospheric Pre-corrected Differential Absorption" (APDA) technique and described an iterative scheme to retrieve water vapor on a pixel-by-pixel basis. Next we compared both, the CIBR and the APDA using the Duntley equation for MODTRAN3 computed irradiances, transmissions and path radiance (using the DISORT option). This simulation showed that the CIBR is very sensitive to reflectance effects and that the APDA performs much better. An extensive data set was created with the radiative transfer code 6S over 379 different ground reflectance spectra. The calculated relative water vapor error was reduced significantly for the APDA. The APDA technique had about 8% (vs. over 35% for the CIBR) of the 379 spectra with a relative water vapor error of greater than +5%. The APDA has been applied to 1991 and 1995 AVIRIS scenes which visually demonstrate the improvement over the CIBR technique.

Atmospheric pre-corrected differential absorption techniques to retrieve columnar water vapor: Theory and simulations

Energy Technology Data Exchange (ETDEWEB)

Borel, C.C.; Schlaepfer, D.

1996-03-01

Two different approaches exist to retrieve columnar water vapor from imaging spectrometer data: (1) Differential absorption techniques based on: (a) Narrow-Wide (N/W) ratio between overlapping spectrally wide and narrow channels (b) Continuum Interpolated Band Ratio (CIBR) between a measurement channel and the weighted sum of two reference channels; and (2) Non-linear fitting techniques which are based on spectral radiative transfer calculations. The advantage of the first approach is computational speed and of the second, improved retrieval accuracy. Our goal was to improve the accuracy of the first technique using physics based on radiative transfer. Using a modified version of the Duntley equation, we derived an {open_quote}Atmospheric Pre-corrected Differential Absorption{close_quote} (APDA) technique and described an iterative scheme to retrieve water vapor on a pixel-by-pixel basis. Next we compared both, the CIBR and the APDA using the Duntley equation for MODTRAN3 computed irradiances, transmissions and path radiance (using the DISORT option). This simulation showed that the CIBR is very sensitive to reflectance effects and that the APDA performs much better. An extensive data set was created with the radiative transfer code 6S over 379 different ground reflectance spectra. The calculated relative water vapor error was reduced significantly for the APDA. The APDA technique had about 8% (vs. over 35% for the CIBR) of the 379 spectra with a relative water vapor error of greater than {+-}5%. The APDA has been applied to 1991 and 1995 AVIRIS scenes which visually demonstrate the improvement over the CIBR technique.

Differential Absorption Measurements of Atmospheric Water Vapor with a Coherent Lidar at 2050.532 nm

Science.gov (United States)

Koch, Grady J.; Dharamsi, Amin; Davis, Richard E.; Petros, Mulugeta; McCarthy, John C.

1999-01-01

Wind and water vapor are two major factors driving the Earth's atmospheric circulation, and direct measurement of these factors is needed for better understanding of basic atmospheric science, weather forecasting, and climate studies. Coherent lidar has proved to be a valuable tool for Doppler profiling of wind fields, and differential absorption lidar (DIAL) has shown its effectiveness in profiling water vapor. These two lidar techniques are generally considered distinctly different, but this paper explores an experimental combination of the Doppler and DIAL techniques for measuring both wind and water vapor with an eye-safe wavelength based on a solid-state laser material. Researchers have analyzed and demonstrated coherent DIAL water vapor measurements at 10 micrometers wavelength based on CO2 lasers. The hope of the research presented here is that the 2 gm wavelength in a holmium or thulium-based laser may offer smaller packaging and more rugged operation that the CO2-based approach. Researchers have extensively modeled 2 um coherent lasers for water vapor profiling, but no published demonstration is known. Studies have also been made, and results published on the Doppler portion, of a Nd:YAG-based coherent DIAL operating at 1.12 micrometers. Eye-safety of the 1.12 micrometer wavelength may be a concern, whereas the longer 2 micrometer and 10 micrometer systems allow a high level of eyesafety.

Collision and radiative processes in emission of atmospheric carbon dioxide

Science.gov (United States)

Smirnov, B. M.

2018-05-01

The peculiarities of the spectroscopic properties of CO2 molecules in air due to vibration-rotation radiative transitions are analyzed. The absorption coefficient due to atmospheric carbon dioxide and other atmospheric components is constructed within the framework of the standard atmosphere model, on the basis of classical molecular spectroscopy and the regular model for the spectroscopy absorption band. The radiative flux from the atmosphere toward the Earth is represented as that of a blackbody, and the radiative temperature for emission at a given frequency is determined with accounting for the local thermodynamic equilibrium, a small gradient of the tropospheric temperature and a high optical thickness of the troposphere for infrared radiation. The absorption band model with an absorption coefficient averaged over the frequency and line-by-line model are used for evaluating the radiative flux from the atmosphere to the Earth which values are nearby for these models and are equal W m‑2 for the contemporary concentration of atmospheric CO2 molecules and W m‑2 at its doubled value. The absorption band model is not suitable to calculate the radiative flux change at doubling of carbon dioxide concentration because averaging over oscillations decreases the range where the atmospheric optical thickness is of the order of one, and just this range determines this change. The line-by-line method gives the change of the global temperature K as a result of doubling the carbon dioxide concentration. The contribution to the global temperature change due to anthropogenic injection of carbon dioxide in the atmosphere, i.e. resulted from combustion of fossil fuels, is approximately 0.02 K now.

Microwave Atmospheric-Pressure Sensor

Science.gov (United States)

Flower, D. A.; Peckham, G. E.; Bradford, W. J.

1986-01-01

Report describes tests of microwave pressure sounder (MPS) for use in satellite measurements of atmospheric pressure. MPS is multifrequency radar operating between 25 and 80 GHz. Determines signal absorption over vertical path through atmosphere by measuring strength of echoes from ocean surface. MPS operates with cloud cover, and suitable for use on current meteorological satellites.

Transmission and fluorescence X-ray absorption spectroscopy cell/flow reactor for powder samples under vacuum or in reactive atmospheres

KAUST Repository

Hoffman, A. S.; Debefve, L. M.; Bendjeriou-Sedjerari, Anissa; Ould-Chikh, Samy; Bare, Simon R.; Basset, Jean-Marie; Gates, B. C.

2016-01-01

X-ray absorption spectroscopy is an element-specific technique for probing the local atomic-scale environment around an absorber atom. It is widely used to investigate the structures of liquids and solids, being especially valuable for characterization of solid-supported catalysts. Reported cell designs are limited in capabilities—to fluorescence or transmission and to static or flowing atmospheres, or to vacuum. Our goal was to design a robust and widely applicable cell for catalyst characterizations under all these conditions—to allow tracking of changes during genesis and during operation, both under vacuum and in reactive atmospheres. Herein, we report the design of such a cell and a demonstration of its operation both with a sample under dynamic vacuum and in the presence of gases flowing at temperatures up to 300 °C, showing data obtained with both fluorescence and transmission detection. The cell allows more flexibility in catalyst characterization than any reported.

Transmission and fluorescence X-ray absorption spectroscopy cell/flow reactor for powder samples under vacuum or in reactive atmospheres

KAUST Repository

Hoffman, A. S.

2016-07-26

X-ray absorption spectroscopy is an element-specific technique for probing the local atomic-scale environment around an absorber atom. It is widely used to investigate the structures of liquids and solids, being especially valuable for characterization of solid-supported catalysts. Reported cell designs are limited in capabilities—to fluorescence or transmission and to static or flowing atmospheres, or to vacuum. Our goal was to design a robust and widely applicable cell for catalyst characterizations under all these conditions—to allow tracking of changes during genesis and during operation, both under vacuum and in reactive atmospheres. Herein, we report the design of such a cell and a demonstration of its operation both with a sample under dynamic vacuum and in the presence of gases flowing at temperatures up to 300 °C, showing data obtained with both fluorescence and transmission detection. The cell allows more flexibility in catalyst characterization than any reported.

SkyProbe: Real-Time Precision Monitoring in the Optical of the Absolute Atmospheric Absorption on the Telescope Science and Calibration Fields

Science.gov (United States)

Cuillandre, J.-C.; Magnier, E.; Sabin, D.; Mahoney, B.

2016-05-01

Mauna Kea is known for its pristine seeing conditions but sky transparency can be an issue for science operations since at least 25% of the observable (i.e. open dome) nights are not photometric, an effect mostly due to high-altitude cirrus. Since 2001, the original single channel SkyProbe mounted in parallel on the Canada-France-Hawaii Telescope (CFHT) has gathered one V-band exposure every minute during each observing night using a small CCD camera offering a very wide field of view (35 sq. deg.) encompassing the region pointed by the telescope for science operations, and exposures long enough (40 seconds) to capture at least 100 stars of Hipparcos' Tycho catalog at high galactic latitudes (and up to 600 stars at low galactic latitudes). The measurement of the true atmospheric absorption is achieved within 2%, a key advantage over all-sky direct thermal infrared imaging detection of clouds. The absolute measurement of the true atmospheric absorption by clouds and particulates affecting the data being gathered by the telescope's main science instrument has proven crucial for decision making in the CFHT queued service observing (QSO) representing today all of the telescope time. Also, science exposures taken in non-photometric conditions are automatically registered for a new observation at a later date at 1/10th of the original exposure time in photometric conditions to ensure a proper final absolute photometric calibration. Photometric standards are observed only when conditions are reported as being perfectly stable by SkyProbe. The more recent dual color system (simultaneous B & V bands) will offer a better characterization of the sky properties above Mauna Kea and should enable a better detection of the thinnest cirrus (absorption down to 0.01 mag., or 1%).

Sulfur X-ray absorption fine structure in porous Li–S cathode films measured under argon atmospheric conditions

International Nuclear Information System (INIS)

Müller, Matthias; Choudhury, Soumyadip; Gruber, Katharina; Cruz, Valene B.; Fuchsbichler, Bernd; Jacob, Timo; Koller, Stefan; Stamm, Manfred; Ionov, Leonid; Beckhoff, Burkhard

2014-01-01

In this paper we present the first results for the characterization of highly porous cathode materials with pore sizes below 1 μm for Lithium Sulfur (Li–S) batteries by Near Edge X-ray Absorption Fine Structure (NEXAFS) spectroscopy. A novel cathode material of porous carbon films fabricated with colloidal array templates has been investigated. In addition, an electrochemical characterization has been performed aiming on an improved correlation of physical and chemical parameters with the electrochemical performance. The performed NEXAFS measurements of cathode materials allowed for a chemical speciation of the sulfur content inside the cathode material. The aim of the presented investigation was to evaluate the potential of the NEXAFS technique to characterize sulfur in novel battery material. The long term goal for the characterization of the battery materials is the sensitive identification of undesired side reactions, such as the polysulfide shuttle, which takes place during charging and discharging of the battery. The main drawback associated with the investigation of these materials is the fact that NEXAFS measurements can usually only be performed ex situ due to the limited in situ instrumentation being available. For Li–S batteries this problem is more pronounced because of the low photon energies needed to study the sulfur K absorption edge at 2472 eV. We employed 1 μm thick Si 3 N 4 windows to construct sealed argon cells for NEXAFS measurements under ultra high vacuum (UHV) conditions as a first step towards in situ measurements. The cells keep the sample under argon atmosphere at any time and the X-ray beam passes mainly through vacuum which enables the detection of the low energy X-ray emission of sulfur. Using these argon cells we found indications for the presence of lithium polysulfides in the cathode films whereas the correlations to the offline electrochemical results remain somewhat ambiguous. As a consequence of these findings one may

Upper limits for absorption by water vapor in the near-UV

International Nuclear Information System (INIS)

Wilson, Eoin M.; Wenger, John C.; Venables, Dean S.

2016-01-01

There are few experimental measurements of absorption by water vapor in the near-UV. Here we report the results of spectral measurements of water vapor absorption at ambient temperature and pressure from 325 nm to 420 nm, covering most tropospherically relevant short wavelengths. Spectra were recorded using a broadband optical cavity in the chemically controlled environment of an atmospheric simulation chamber. No absorption attributable to the water monomer (or the dimer) was observed at the 0.5 nm resolution of our system. Our results are consistent with calculated spectra and recent DOAS field observations, but contradict a report of significant water absorption in the near-UV. Based on the detection limit of our instrument, we report upper limits for the water absorption cross section of less than 5×10 −26 cm 2 molecule −1 at our instrument resolution. For a typical, indicative slant column density of 4×10 23 cm 2 , we calculate a maximum optical depth of 0.02 arising from absorption of water vapor in the atmosphere at wavelengths between 340 nm and 420 nm, with slightly higher maximum optical depths below 340 nm. The results of this work, together with recent atmospheric observations and computational results, suggest that water vapor absorption across most of the near-UV is small compared to visible and infrared wavelengths. - Highlights: • The absorption cross section of water vapor was studied from 325 to 420 nm. • The upper limit was 5×10 −26 cm 2 molecule −1 above 340 nm at 0.5 nm resolution. • Our result contradicts a recent report of appreciable absorption by water vapor.

Accurate measurements and temperature dependence of the water vapor self-continuum absorption in the 2.1 μm atmospheric window

International Nuclear Information System (INIS)

Ventrillard, I.; Romanini, D.; Mondelain, D.; Campargue, A.

2015-01-01

In spite of its importance for the evaluation of the Earth radiative budget, thus for climate change, very few measurements of the water vapor continuum are available in the near infrared atmospheric windows especially at temperature conditions relevant for our atmosphere. In addition, as a result of the difficulty to measure weak broadband absorption signals, the few available measurements show large disagreements. We report here accurate measurements of the water vapor self-continuum absorption in the 2.1 μm window by Optical Feedback Cavity Enhanced Absorption Spectroscopy (OF-CEAS) for two spectral points located at the low energy edge and at the center of the 2.1 μm transparency window, at 4302 and 4723 cm −1 , respectively. Self-continuum cross sections, C S , were retrieved with a few % relative uncertainty, from the quadratic dependence of the spectrum base line level measured as a function of water vapor pressure, between 0 and 16 Torr. At 296 K, the C S value at 4302 cm −1 is found 40% higher than predicted by the MT-CKD V2.5 model, while at 4723 cm −1 , our value is 5 times larger than the MT-CKD value. On the other hand, these OF-CEAS C S values are significantly smaller than recent measurements by Fourier transform spectroscopy at room temperature. The temperature dependence of the self-continuum cross sections was also investigated for temperatures between 296 K and 323 K (23-50 °C). The derived temperature variation is found to be similar to that derived from previous Fourier transform spectrometer (FTS) measurements performed at higher temperatures, between 350 K and 472 K. The whole set of measurements spanning the 296-472 K temperature range follows a simple exponential law in 1/T with a slope close to the dissociation energy of the water dimer, D 0 ≈ 1100 cm −1

UV Absorption Cross Sections of Nitrous Oxide (N2O) and Carbon Tetrachloride (CCl4) Between 210 and 350 K and the Atmospheric Implications

Science.gov (United States)

Carlon, Nabilah Rontu; Papanastasiou, Dimitrios K.; Fleming, Eric L.; Jackman, Charles H.; Newman, Paul A.; Burkholder, James B.

2010-01-01

Absorption cross sections of nitrous oxide (N2O) and carbon tetrachloride (CCl4) are reported at five atomic UV lines (184.95, 202.548, 206.200, 213.857, and 228.8 nm) at 27 temperatures in the range 210-350 K. In addition, UV absorption spectra of CCl4 are reported between 200-235 nm as a function of temperature (225-350 K). The results from this work are critically compared with results from earlier studies. For N2O, the present results are in good agreement with the current JPL recommendation enabling a reduction in the estimated uncertainty in the N2O atmospheric photolysis rate. For CCl4, the present cross section results are systematically greater than the current recommendation at the reduced temperatures most relevant to stratospheric photolysis. The new cross sections result in a 5-7% increase in the modeled CCl4 photolysis loss, and a slight decrease in the stratospheric lifetime, from 51 to 50 years, for present day conditions. The corresponding changes in modeled inorganic chlorine and ozone in the stratosphere are quite small. A CCl4 cross section parameterization for use in 37 atmospheric model calculations is presented.

Computation of Collision-Induced Absorption by Simple Molecular Complexes, for Astrophysical Applications

Science.gov (United States)

Abel, Martin; Frommhold, Lothar; Li, Xiaoping; Hunt, Katharine L. C.

2012-06-01

The interaction-induced absorption by collisional pairs of H{_2} molecules is an important opacity source in the atmospheres of various types of planets and cool stars, such as late stars, low-mass stars, brown dwarfs, cool white dwarf stars, the ambers of the smaller, burnt out main sequence stars, exoplanets, etc., and therefore of special astronomical interest The emission spectra of cool white dwarf stars differ significantly in the infrared from the expected blackbody spectra of their cores, which is largely due to absorption by collisional H{_2}-H{_2}, H{_2}-He, and H{_2}-H complexes in the stellar atmospheres. Using quantum-chemical methods we compute the atmospheric absorption from hundreds to thousands of kelvin. Laboratory measurements of interaction-induced absorption spectra by H{_2} pairs exist only at room temperature and below. We show that our results reproduce these measurements closely, so that our computational data permit reliable modeling of stellar atmosphere opacities even for the higher temperatures. First results for H_2-He complexes have already been applied to astrophysical models have shown great improvements in these models. L. Frommhold, Collision-Induced Absorption in Gases, Cambridge University Press, Cambridge, New York, 1993 and 2006 X. Li, K. L. C. Hunt, F. Wang, M. Abel, and L. Frommhold, Collision-Induced Infrared Absorption by Molecular Hydrogen Pairs at Thousands of Kelvin, Int. J. of Spect., vol. 2010, Article ID 371201, 11 pages, 2010. doi: 10.1155/2010/371201 M. Abel, L. Frommhold, X. Li, and K. L. C. Hunt, Collision-induced absorption by H{_2} pairs: From hundreds to thousands of Kelvin, J. Phys. Chem. A, 115, 6805-6812, 2011} L. Frommhold, M. Abel, F. Wang, M. Gustafsson, X. Li, and K. L. C. Hunt, "Infrared atmospheric emission and absorption by simple molecular complexes, from first principles", Mol. Phys. 108, 2265, 2010 M. Abel, L. Frommhold, X. Li, and K. L. C. Hunt, Infrared absorption by collisional H_2-He complexes

Measurements in interplanetary space and in the Martian upper atmosphere with a hydrogen absorption-cell spectrophotometer for Lα-radiation on-board Mars 4 - 7 spaceprobes

International Nuclear Information System (INIS)

Babichenko, S.I.; Deregusov, E.V.; Kurt, V.G.; Romanova, N.N.; Skljankin, V.A.; Smirnov, A.S.; Bertaux, J.J.; Blamont, J.

1977-01-01

An ultraviolet spectrophotometer UFS-2, designed to measure radiation of atomic hydrogen in the Lα-line, was installed onboard the interplanetary Mars 4 - 7 spaceprobes launched in August 1973. The absorption cell which was used for the first time outside the hydrogen geocorona allowed direct temperature measurements of neutral interstellar hydrogen near the Sun and in the upper Martian atmosphere. (Auth.)

Collision-Induced Infrared Absorption by Collisional Complexes in Dense Hydrogen-Helium Gas Mixtures at Thousands of Kelvin

Science.gov (United States)

Abel, Martin; Frommhold, Lothar; Li, Xiaoping; Hunt, Katharine L. C.

2011-06-01

The interaction-induced absorption by collisional pairs of H{_2} molecules is an important opacity source in the atmospheres of the outer planets and cool stars. The emission spectra of cool white dwarf stars differ significantly in the infrared from the expected blackbody spectra of their cores, which is largely due to absorption by collisional H{_2}-H{_2}, H{_2}-He, and H{_2}-H complexes in the stellar atmospheres. Using quantum-chemical methods we compute the atmospheric absorption from hundreds to thousands of kelvin. Laboratory measurements of interaction-induced absorption spectra by H{_2} pairs exist only at room temperature and below. We show that our results reproduce these measurements closely, so that our computational data permit reliable modeling of stellar atmosphere opacities even for the higher temperatures. L. Frommhold, Collision-Induced Absorption in Gases, Cambridge University Press, Cambridge, New York, 1993 and 2006 Xiaoping Li, Katharine L. C. Hunt, Fei Wang, Martin Abel, and Lothar Frommhold, "Collision-Induced Infrared Absorption by Molecular Hydrogen Pairs at Thousands of Kelvin", International Journal of Spectroscopy, vol. 2010, Article ID 371201, 11 pages, 2010. doi: 10.1155/2010/371201 M. Abel, L. Frommhold, X. Li, and K. L. C. Hunt, "Collision-induced absorption by H{_2} pairs: From hundreds to thousands of Kelvin," J. Phys. Chem. A, published online, DOI: 10.1021/jp109441f L. Frommhold, M. Abel, F. Wang, M. Gustafsson, X. Li, and K. L. C. Hunt, "Infrared atmospheric emission and absorption by simple molecular complexes, from first principles", Mol. Phys. 108, 2265, 2010

Atmospherical simulations of the OMEGA/MEX observations

Science.gov (United States)

Melchiorri, R.; Drossart, P.; Combes, M.; Encrenaz, T.; Fouchet, T.; Forget, F.; Bibring, J. P.; Ignatiev, N.; Moroz, V.; OMEGA Team

The modelization of the atmospheric contribution in the martian spectrum is an important step for the OMEGA data analysis.A full line by line radiative transfer calculation is made for the gas absorption; the dust opacity component, in a first approximation, is calculated as an optically thin additive component.Due to the large number of parameters needed in the calculations, the building of a huge data base to be interpolated is not envisageable, for each observed OMEGA spectrum with calculation for all the involved parameters (atmospheric pressure, water abundance, CO abundance, dust opacity and geometric angles of observation). The simulation of the observations allows us to fix all the orbital parameters and leave the unknown parameters as the only variables.Starting from the predictions of the current meteorological models of Mars we build a smaller data base corresponding on each observation. We present here a first order simulation, which consists in retrieving atmospheric contribution from the solar reflected component as a multiplicative (for gas absorption) and an additive component (for suspended dust contribution); although a fully consistent approach will require to include surface and atmosphere contributions together in synthetic calculations, this approach is sufficient for retrieving mineralogic information cleaned from atmospheric absorption at first order.First comparison to OMEGA spectra will be presented, with first order retrieval of CO2 pressure, CO and H2O abundance, and dust opacity.

Brown carbon absorption in the red and near-infrared spectral region

Science.gov (United States)

Hoffer, András; Tóth, Ádám; Pósfai, Mihály; Eddy Chung, Chul; Gelencsér, András

2017-06-01

Black carbon (BC) aerosols have often been assumed to be the only light-absorbing carbonaceous particles in the red and near-infrared spectral regions of solar radiation in the atmosphere. Here we report that tar balls (a specific type of organic aerosol particles from biomass burning) do absorb red and near-infrared radiation significantly. Tar balls were produced in a laboratory experiment, and their chemical and optical properties were measured. The absorption of these particles in the range between 470 and 950 nm was measured with an aethalometer, which is widely used to measure atmospheric aerosol absorption. We find that the absorption coefficient of tar balls at 880 nm is more than 10 % of that at 470 nm. The considerable absorption of red and infrared light by tar balls also follows from their relatively low absorption Ångström coefficient (and significant mass absorption coefficient) in the spectral range between 470 and 950 nm. Our results support the previous finding that tar balls may play an important role in global warming. Due to the non-negligible absorption of tar balls in the near-infrared region, the absorption measured in the field at near-infrared wavelengths cannot solely be due to soot particles.

Leaf absorption of atmospheric ammonia emitted from pig slurry applied beneath the canopy of winter wheat

International Nuclear Information System (INIS)

Gjedde Sommer, S.; Jensen, E.S.; Kofoed Schjoerring, J.

1993-01-01

Absorption of volatilized ammonia after application of slurry onto the soil surface (sand) between rows of a wheat crop was studied in two experiments. The slurry was labelled with 15 N-NH 4 . During seven days the accumulated gaseous N loss from the slurry varied from 6.9 to 11.1 g N m -2 . In April ammonia losses from slurry applied beneath a 5 cm high wheat crop were equal to losses from slurry applied to a fallow, but 2.2% of the lost atmospheric ammonia was taken up by the leaves. In May ammonia loss from slurry applied between the rows of a 43 cm high crop was reduced by 6% compared to the loss from fallow, because of a reduced transfer of ammonia from the slurry to the air. Of the emitted ammonia 3.3% was absorbed by the canopy. (au)

3-color DPAS Aerosol Absorption Monitor, Phase I

Data.gov (United States)

National Aeronautics and Space Administration — We propose to develop a highly sensitive and compact device to monitor light absorption from atmospheric aerosols simultaneously at three spectral regions, red,...

Measurement and modeling of shortwave irradiance components in cloud-free atmospheres

Energy Technology Data Exchange (ETDEWEB)

Halthore, R.N.

1999-08-04

Atmosphere scatters and absorbs incident solar radiation modifying its spectral content and decreasing its intensity at the surface. It is very useful to classify the earth-atmospheric solar radiation into several components--direct solar surface irradiance (E{sub direct}), diffuse-sky downward surface irradiance (E{sub diffuse}), total surface irradiance, and upwelling flux at the surface and at the top-of-the atmosphere. E{sub direct} depends only on the extinction properties of the atmosphere without regard to details of extinction, namely scattering or absorption; furthermore it can be accurately measured to high accuracy (0.3%) with the aid of an active cavity radiometer (ACR). E{sub diffuse} has relatively larger uncertainties both in its measurement using shaded pyranometers and in model estimates, owing to the difficulty in accurately characterizing pyranometers and in measuring model inputs such as surface reflectance, aerosol single scattering albedo, and phase function. Radiative transfer model simulations of the above surface radiation components in cloud-free skies using measured atmospheric properties show that while E{sub direct} estimates are closer to measurements, E{sub diffuse} is overestimated by an amount larger than the combined uncertainties in model inputs and measurements, illustrating a fundamental gap in the understanding of the magnitude of atmospheric absorption in cloud-free skies. The excess continuum type absorption required to reduce the E{sub diffuse} model overestimate ({approximately}3--8% absorptance) would significantly impact climate prediction and remote sensing. It is not clear at present what the source for this continuum absorption is. Here issues related to measurements and modeling of the surface irradiance components are discussed.

Distributional Replication

OpenAIRE

Beare, Brendan K.

2009-01-01

Suppose that X and Y are random variables. We define a replicating function to be a function f such that f(X) and Y have the same distribution. In general, the set of replicating functions for a given pair of random variables may be infinite. Suppose we have some objective function, or cost function, defined over the set of replicating functions, and we seek to estimate the replicating function with the lowest cost. We develop an approach to estimating the cheapest replicating function that i...

Chromatin Immunoprecipitation of Replication Factors Moving with the Replication Fork

OpenAIRE

Rapp, Jordan B.; Ansbach, Alison B.; Noguchi, Chiaki; Noguchi, Eishi

2009-01-01

Replication of chromosomes involves a variety of replication proteins including DNA polymerases, DNA helicases, and other accessory factors. Many of these proteins are known to localize at replication forks and travel with them as components of the replisome complex. Other proteins do not move with replication forks but still play an essential role in DNA replication. Therefore, in order to understand the mechanisms of DNA replication and its controls, it is important to examine localization ...

Departures from radiative equilibrium in stellar atmospheres grey absorption

International Nuclear Information System (INIS)

Cram, L.E.

1978-01-01

We discuss some of the consequences of departures from radiative equilibrium in stellar atmospheres. Using a discrete ordinates method we solve the radiative transfer equation in a grey atmosphere subjected to a specified distribution of mechanical heating, and determine the resulting temperature changes in LTE and non LTE conditions. We show how radiative transfer leads to temperature changes in regions that are not directly heated, and how non LTE effects lead to an amplification of the temperature rise produced by a given distribution of heating. An attempt is made to resolve a controversy surrounding the estimation of excess radiative losses in the solar chromosphere. (orig.) [de

Advanced Sine Wave Modulation of Continuous Wave Laser System for Atmospheric CO2 Differential Absorption Measurements

Science.gov (United States)

Campbell, Joel F.; Lin, Bing; Nehrir, Amin R.

2014-01-01

NASA Langley Research Center in collaboration with ITT Exelis have been experimenting with Continuous Wave (CW) laser absorption spectrometer (LAS) as a means of performing atmospheric CO2 column measurements from space to support the Active Sensing of CO2 Emissions over Nights, Days, and Seasons (ASCENDS) mission.Because range resolving Intensity Modulated (IM) CW lidar techniques presented here rely on matched filter correlations, autocorrelation properties without side lobes or other artifacts are highly desirable since the autocorrelation function is critical for the measurements of lidar return powers, laser path lengths, and CO2 column amounts. In this paper modulation techniques are investigated that improve autocorrelation properties. The modulation techniques investigated in this paper include sine waves modulated by maximum length (ML) sequences in various hardware configurations. A CW lidar system using sine waves modulated by ML pseudo random noise codes is described, which uses a time shifting approach to separate channels and make multiple, simultaneous online/offline differential absorption measurements. Unlike the pure ML sequence, this technique is useful in hardware that is band pass filtered as the IM sine wave carrier shifts the main power band. Both amplitude and Phase Shift Keying (PSK) modulated IM carriers are investigated that exibit perfect autocorrelation properties down to one cycle per code bit. In addition, a method is presented to bandwidth limit the ML sequence based on a Gaussian filter implemented in terms of Jacobi theta functions that does not seriously degrade the resolution or introduce side lobes as a means of reducing aliasing and IM carrier bandwidth.

Replication Catastrophe

DEFF Research Database (Denmark)

Toledo, Luis; Neelsen, Kai John; Lukas, Jiri

2017-01-01

Proliferating cells rely on the so-called DNA replication checkpoint to ensure orderly completion of genome duplication, and its malfunction may lead to catastrophic genome disruption, including unscheduled firing of replication origins, stalling and collapse of replication forks, massive DNA...... breakage, and, ultimately, cell death. Despite many years of intensive research into the molecular underpinnings of the eukaryotic replication checkpoint, the mechanisms underlying the dismal consequences of its failure remain enigmatic. A recent development offers a unifying model in which the replication...... checkpoint guards against global exhaustion of rate-limiting replication regulators. Here we discuss how such a mechanism can prevent catastrophic genome disruption and suggest how to harness this knowledge to advance therapeutic strategies to eliminate cancer cells that inherently proliferate under...

Infrared radiation models for atmospheric methane

Science.gov (United States)

Cess, R. D.; Kratz, D. P.; Caldwell, J.; Kim, S. J.

1986-01-01

Mutually consistent line-by-line, narrow-band and broad-band infrared radiation models are presented for methane, a potentially important anthropogenic trace gas within the atmosphere. Comparisons of the modeled band absorptances with existing laboratory data produce the best agreement when, within the band models, spurious band intensities are used which are consistent with the respective laboratory data sets, but which are not consistent with current knowledge concerning the intensity of the infrared fundamental band of methane. This emphasizes the need for improved laboratory band absorptance measurements. Since, when applied to atmospheric radiation calculations, the line-by-line model does not require the use of scaling approximations, the mutual consistency of the band models provides a means of appraising the accuracy of scaling procedures. It is shown that Curtis-Godson narrow-band and Chan-Tien broad-band scaling provide accurate means of accounting for atmospheric temperature and pressure variations.

Absolute atomic oxygen and nitrogen densities in radio-frequency driven atmospheric pressure cold plasmas: Synchrotron vacuum ultra-violet high-resolution Fourier-transform absorption measurements

International Nuclear Information System (INIS)

Niemi, K.; O'Connell, D.; Gans, T.; Oliveira, N. de; Joyeux, D.; Nahon, L.; Booth, J. P.

2013-01-01

Reactive atomic species play a key role in emerging cold atmospheric pressure plasma applications, in particular, in plasma medicine. Absolute densities of atomic oxygen and atomic nitrogen were measured in a radio-frequency driven non-equilibrium plasma operated at atmospheric pressure using vacuum ultra-violet (VUV) absorption spectroscopy. The experiment was conducted on the DESIRS synchrotron beamline using a unique VUV Fourier-transform spectrometer. Measurements were carried out in plasmas operated in helium with air-like N 2 /O 2 (4:1) admixtures. A maximum in the O-atom concentration of (9.1 ± 0.7)×10 20 m −3 was found at admixtures of 0.35 vol. %, while the N-atom concentration exhibits a maximum of (5.7 ± 0.4)×10 19 m −3 at 0.1 vol. %

Aerosol light absorption and its measurement: A review

International Nuclear Information System (INIS)

Moosmueller, H.; Chakrabarty, R.K.; Arnott, W.P.

2009-01-01

Light absorption by aerosols contributes to solar radiative forcing through absorption of solar radiation and heating of the absorbing aerosol layer. Besides the direct radiative effect, the heating can evaporate clouds and change the atmospheric dynamics. Aerosol light absorption in the atmosphere is dominated by black carbon (BC) with additional, significant contributions from the still poorly understood brown carbon and from mineral dust. Sources of these absorbing aerosols include biomass burning and other combustion processes and dust entrainment. For particles much smaller than the wavelength of incident light, absorption is proportional to the particle volume and mass. Absorption can be calculated with Mie theory for spherical particles and with more complicated numerical methods for other particle shapes. The quantitative measurement of aerosol light absorption is still a challenge. Simple, commonly used filter measurements are prone to measurement artifacts due to particle concentration and modification of particle and filter morphology upon particle deposition, optical interaction of deposited particles and filter medium, and poor angular integration of light scattered by deposited particles. In situ methods measure particle absorption with the particles in their natural suspended state and therefore are not prone to effects related to particle deposition and concentration on filters. Photoacoustic and refractive index-based measurements rely on the heating of particles during light absorption, which, for power-modulated light sources, causes an acoustic signal and modulation of the refractive index in the air surrounding the particles that can be quantified with a microphone and an interferometer, respectively. These methods may suffer from some interference due to light-induced particle evaporation. Laser-induced incandescence also monitors particle heating upon absorption, but heats absorbing particles to much higher temperatures to quantify BC mass

Database Replication Prototype

OpenAIRE

Vandewall, R.

2000-01-01

This report describes the design of a Replication Framework that facilitates the implementation and com-parison of database replication techniques. Furthermore, it discusses the implementation of a Database Replication Prototype and compares the performance measurements of two replication techniques based on the Atomic Broadcast communication primitive: pessimistic active replication and optimistic active replication. The main contributions of this report can be split into four parts....

Atmospheric solar heating rate in the water vapor bands

Science.gov (United States)

Chou, Ming-Dah

1986-01-01

The total absorption of solar radiation by water vapor in clear atmospheres is parameterized as a simple function of the scaled water vapor amount. For applications to cloudy and hazy atmospheres, the flux-weighted k-distribution functions are computed for individual absorption bands and for the total near-infrared region. The parameterization is based upon monochromatic calculations and follows essentially the scaling approximation of Chou and Arking, but the effect of temperature variation with height is taken into account in order to enhance the accuracy. Furthermore, the spectral range is extended to cover the two weak bands centered at 0.72 and 0.82 micron. Comparisons with monochromatic calculations show that the atmospheric heating rate and the surface radiation can be accurately computed from the parameterization. Comparisons are also made with other parameterizations. It is found that the absorption of solar radiation can be computed reasonably well using the Goody band model and the Curtis-Godson approximation.

Measurements of the Absorptive Properties of the Ionosphere

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — Absorption of radio waves occurs when electrons responding to the wave fields collide with and transfer energy to the neutral particles. A study of ionospheric...

The Zugspitze radiative closure experiment for quantifying water vapor absorption over the terrestrial and solar infrared – Part 3: Quantification of the mid- and near-infrared water vapor continuum in the 2500 to 7800 cm−1 spectral range under atmospheric conditions

Directory of Open Access Journals (Sweden)

A. Reichert

2016-09-01

Full Text Available We present a first quantification of the near-infrared (NIR water vapor continuum absorption from an atmospheric radiative closure experiment carried out at the Zugspitze (47.42° N, 10.98° E; 2964 m a.s.l.. Continuum quantification is achieved via radiative closure using radiometrically calibrated solar Fourier transform infrared (FTIR absorption spectra covering the 2500 to 7800 cm−1 spectral range. The dry atmospheric conditions at the Zugspitze site (IWV 1.4 to 3.3 mm enable continuum quantification even within water vapor absorption bands, while upper limits for continuum absorption can be provided in the centers of window regions. Throughout 75 % of the 2500 to 7800 cm−1 spectral range, the Zugspitze results agree within our estimated uncertainty with the widely used MT_CKD 2.5.2 model (Mlawer et al., 2012. In the wings of water vapor absorption bands, our measurements indicate about 2–5 times stronger continuum absorption than MT_CKD, namely in the 2800 to 3000 cm−1 and 4100 to 4200 cm−1 spectral ranges. The measurements are consistent with the laboratory measurements of Mondelain et al. (2015, which rely on cavity ring-down spectroscopy (CDRS, and the calorimetric–interferometric measurements of Bicknell et al. (2006. Compared to the recent FTIR laboratory studies of Ptashnik et al. (2012, 2013, our measurements are consistent within the estimated errors throughout most of the spectral range. However, in the wings of water vapor absorption bands our measurements indicate typically 2–3 times weaker continuum absorption under atmospheric conditions, namely in the 3200 to 3400, 4050 to 4200, and 6950 to 7050 cm−1 spectral regions.

Aerosol Angstrom Absorption Coefficient Comparisons during MILAGRO.

Science.gov (United States)

Marley, N. A.; Marchany-Rivera, A.; Kelley, K. L.; Mangu, A.; Gaffney, J. S.

2007-12-01

Measurements of aerosol absorption were obtained as part of the MAX-Mex component of the MILAGRO field campaign at site T0 (Instituto Mexicano de Petroleo in Mexico City) by using a 7-channel aethalometer (Thermo- Anderson) during the month of March, 2006. The absorption measurements obtained in the field at 370, 470, 520, 590, 660, 880, and 950 nm were used to determine the aerosol Angstrom absorption exponents by linear regression. Since, unlike other absorbing aerosol species (e.g. humic like substances, nitrated PAHs), black carbon absorption is relatively constant from the ultraviolet to the infrared with an Angstrom absorption exponent of -1 (1), a comparison of the Angstrom exponents can indicate the presence of aerosol components with an enhanced UV absorption over that expected from BC content alone. The Angstrom exponents determined from the aerosol absorption measurements obtained in the field varied from - 0.7 to - 1.3 during the study and was generally lower in the afternoon than the morning hours, indicating an increase in secondary aerosol formation and photochemically generated UV absorbing species in the afternoon. Twelve-hour integrated samples of fine atmospheric aerosols (Petroleo (IMP) and CENICA.

Atmospheric correction of Earth-observation remote sensing images

Indian Academy of Sciences (India)

In earth observation, the atmospheric particles contaminate severely, through absorption and scattering, the reflected electromagnetic signal from the earth surface. It will be greatly beneficial for land surface characterization if we can remove these atmospheric effects from imagery and retrieve surface reflectance that ...

IR absorption spectrum (4200-3100 cm-1) of H2O and (H2O)2 in CCl4. Estimates of the equilibrium constant and evidence that the atmospheric water absorption continuum is due to the water dimer

International Nuclear Information System (INIS)

Nicolaisen, Flemming M.

2009-01-01

IR absorption spectra, 4200-3100 cm -1 , of water in CCl 4 solutions are presented. It is shown that for saturated solutions significant amounts of water are present as dimer (ca. 2%). The IR spectra of the monomer and dimer are retrieved. The integrated absorption coefficients of the monomer absorption are significantly enhanced relative to the gas phase values. The dimer spectrum consists of 5 bands, of which 4 were expected from data from cold beams and cold matrices. The origin of the 'extra' band is discussed. In addition it is argued that the dimer absorption bands intensities must be enhanced relative to the gas phase values. Based on recent calculations of band strengths, and observed frequency shifts relative to the gas phase, the intensity enhancement factors are estimated as well as the monomer/dimer equilibrium constant in CCl 4 solution at T=296 K (K c =1.29 mol -1 L). It is noted that the observed dimer spectrum has a striking resemblance with the water vapour continuum determined by Burch in 1985 which was recently remeasured by Paynter et al. and it is concluded that the atmospheric water absorption continuum in the investigated spectral region must be due to water dimer. Based on the newly published spectral data a revised value of the gas phase equilibrium constant is suggested (K p =0.035 atm -1 at T=296 K) as well as a value for the standard enthalpy of formation, ΔH 0 =15.4 kJ mol -1 .

Photoacoustic Experimental System to Confirm Infrared Absorption Due to Greenhouse Gases

Science.gov (United States)

Kaneko, Fumitoshi; Monjushiro, Hideaki; Nishiyama, Masayoshi; Kasai, Toshio; Harris, Harold H.

2010-01-01

An experimental system for detecting infrared absorption using the photoacoustic (PA) effect is described. It is aimed for use at high-school level to illustrate the difference in infrared (IR) absorption among the gases contained in the atmosphere in connection with the greenhouse effect. The experimental system can be built with readily…

The Replication Recipe: What makes for a convincing replication?

NARCIS (Netherlands)

Brandt, M.J.; IJzerman, H.; Dijksterhuis, A.J.; Farach, F.J.; Geller, J.; Giner-Sorolla, R.; Grange, J.A.; Perugini, M.; Spies, J.R.; Veer, A. van 't

2014-01-01

Psychological scientists have recently started to reconsider the importance of close replications in building a cumulative knowledge base; however, there is no consensus about what constitutes a convincing close replication study. To facilitate convincing close replication attempts we have developed

The replication recipe : What makes for a convincing replication?

NARCIS (Netherlands)

Brandt, M.J.; IJzerman, H.; Dijksterhuis, Ap; Farach, Frank J.; Geller, Jason; Giner-Sorolla, Roger; Grange, James A.; Perugini, Marco; Spies, Jeffrey R.; van 't Veer, Anna

Psychological scientists have recently started to reconsider the importance of close replications in building a cumulative knowledge base; however, there is no consensus about what constitutes a convincing close replication study. To facilitate convincing close replication attempts we have developed

The nitrogen cycle: Atmosphere interactions

Science.gov (United States)

Levine, J. S.

1984-01-01

Atmospheric interactions involving the nitrogen species are varied and complex. These interactions include photochemical reactions, initiated by the absorption of solar photons and chemical kinetic reactions, which involve both homogeneous (gas-to-gas reactions) and heterogeneous (gas-to-particle) reactions. Another important atmospheric interaction is the production of nitrogen oxides by atmospheric lightning. The nitrogen cycle strongly couples the biosphere and atmosphere. Many nitrogen species are produced by biogenic processes. Once in the atmosphere nitrogen oxides are photochemically and chemically transformed to nitrates, which are returned to the biosphere via precipitation, dry deposition and aerosols to close the biosphere-atmosphere nitrogen cycle. The sources, sinks and photochemistry/chemistry of the nitrogen species; atmospheric nitrogen species; souces and sinks of nitrous oxide; sources; sinks and photochemistry/chemistry of ammonia; seasonal variation of the vertical distribution of ammonia in the troposphere; surface and atmospheric sources of the nitrogen species, and seasonal variation of ground level ammonia are summarized.

The CO_2 absorption spectrum in the 2.3 µm transparency window by high sensitivity CRDS: (II) Self-absorption continuum

International Nuclear Information System (INIS)

Mondelain, D.; Vasilchenko, S.; Čermák, P.; Kassi, S.; Campargue, A.

2017-01-01

The CO_2 absorption continuum near 2.3 µm is determined for a series of sub atmospheric pressures (250–750 Torr) by high sensitivity Cavity Ring Down Spectroscopy. An experimental procedure consisting in injecting successively a gas flow of CO_2 and synthetic air, keeping constant the gas pressure in the CRDS cell, has been developed. This procedure insures a high stability of the spectra baseline by avoiding changes of the optical alignment due to pressure changes. The CO_2 continuum was obtained as the difference between the CO_2 absorption coefficient and a local lines simulation using a Voigt profile truncated at ±25 cm"−"1. Following the results of the preceding analysis of the CO_2 rovibrational lines (Vasilchenko S et al. J Quant Spectrosc Radiat Transfer (10.1016/j.jqsrt.2016.07.002), a CO_2 line list with intensities obtained by variational calculations and empirical line positions was preferred to the HITRAN line list. A quadratic pressure dependence of the absorption continuum is observed, with an average binary absorption coefficient increasing from 2 to 4×10"−"8 cm"−"1 amagat"−"2 between 4320 and 4380 cm"−"1. The obtained continuum is found in good agreement with a previous measurement using much higher densities (20 amagat) and a low resolution grating spectrograph and is consistent with values currently used in the analysis of Venus spectra. - Highlights: • The CO_2 absorption continuum is measured by CRDS in the 2.3 µm window. • The achieved sensitivity and stability allow measurements at sub-atmospheric pressure. • The absorption coefficient is on the order of 3×10"−"8 cm"−"1 amagat"−"2 near 4350 cm"−"1. • A good agreement is obtained with previous results at much higher density (20 amagat).

Absorption by Spinning Dust: A Contaminant for High-redshift 21 cm Observations

Science.gov (United States)

Draine, B. T.; Miralda-Escudé, Jordi

2018-05-01

Spinning dust grains in front of the bright Galactic synchrotron background can produce a weak absorption signal that could affect measurements of high-redshift 21 cm absorption. At frequencies near 80 MHz where the Experiment to Detect the Global EoR Signature (EDGES) has reported 21 cm absorption at z≈ 17, absorption could be produced by interstellar nanoparticles with radii a≈ 50 \\mathringA in the cold interstellar medium (ISM), with rotational temperature T ≈ 50 K. Atmospheric aerosols could contribute additional absorption. The strength of the absorption depends on the abundance of such grains and on their dipole moments, which are uncertain. The breadth of the absorption spectrum of spinning dust limits its possible impact on measurement of a relatively narrow 21 cm absorption feature.

A New Window into Escaping Exoplanet Atmospheres: 10830 Å Line of Helium

Science.gov (United States)

Oklopčić, Antonija; Hirata, Christopher M.

2018-03-01

Observational evidence for escaping exoplanet atmospheres has been obtained for a few exoplanets to date. It comes from strong transit signals detected in the ultraviolet, most notably in the wings of the hydrogen Lyα (Lyα) line. However, the core of the Lyα line is often heavily affected by interstellar absorption and geocoronal emission, limiting the information about the atmosphere that can be extracted from that part of the spectrum. Transit observations in atomic lines that are (a) sensitive enough to trace the rarefied gas in the planetary wind and (b) do not suffer from significant extinction by the interstellar medium could enable more detailed observations, and thus provide better constraints on theoretical models of escaping atmospheres. The absorption line of a metastable state of helium at 10830 Å could satisfy both of these conditions for some exoplanets. We develop a simple 1D model of escaping planetary atmospheres containing hydrogen and helium. We use it to calculate the density profile of helium in the 23S metastable excited state and the expected in-transit absorption at 10830 Å for two exoplanets known to have escaping atmospheres. Our results indicate that exoplanets similar to GJ 436b and HD 209458b should exhibit enhanced transit depths at 10830 Å, with ∼8% and ∼2% excess absorption in the line core, respectively.

Absolute activity determinations on large volume geological samples independent of self-absorption effects

International Nuclear Information System (INIS)

Wilson, W.E.

1980-01-01

This paper describes a method for measuring the absolute activity of large volume samples by γ-spectroscopy independent of self-absorption effects using Ge detectors. The method yields accurate matrix independent results at the expense of replicative counting of the unknown sample. (orig./HP)

Pressure-induced absorption coefficients for radiative transfer calculations in Titan's atmosphere

Science.gov (United States)

Courtin, Regis

1988-01-01

The semiempirical theory of Birnbaum and Cohen (1976) is used to calculate the FIR pressure-induced absorption (PIA) spectra of N2, CH4, N2 + Ar, N2 + CH4, and N2 + H2 under conditions like those in the Titan troposphere. The results are presented graphically and compared with published data from laboratory measurements of PIA in the same gases and mixtures (Dagg et al., 1986; Dore et al., 1986). Good agreement is obtained, with only a slight underestimation of PIA at 300-400/cm in the case of CH4. The absorption coefficients are presented in tables, and it is suggested that the present findings are of value for evaluating the effects of tropospheric clouds on the Titan FIR spectrum and studying the greenhouse effect near the Titan surface.

A differential absorption technique to estimate atmospheric total water vapor amounts

Science.gov (United States)

Frouin, Robert; Middleton, Elizabeth

1990-01-01

Vertically integrated water-vapor amounts can be remotely determined by measuring the solar radiance reflected by the earth's surface with satellites or aircraft-based instruments. The technique is based on the method by Fowle (1912, 1913) and utilizes the 0.940-micron water-vapor band to retrieve total-water-vapor data that is independent of surface reflectance properties and other atmospheric constituents. A channel combination is proposed to provide more accurate results, the SE-590 spectrometer is used to verify the data, and the effects of atmospheric photon backscattering is examined. The spectrometer and radiosonde data confirm the accuracy of using a narrow and a wide channel centered on the same wavelength to determine water vapor amounts. The technique is suitable for cloudless conditions and can contribute to atmospheric corrections of land-surface parameters.

Spectroscopy of the earth's atmosphere and interstellar medium

CERN Document Server

Rao, KN

1992-01-01

Spectroscopy of the Earth's Atmosphere and Interstellar Medium focuses on the characteristics of the electromagnetic spectrum of the Earth's atmosphere in the far-infrared and microwave regions. It discusses the modes of observation in field measurements and reviews the two techniques used in the spectral region. Organized into six chapters, this volume begins with an overview of the effect of water-vapor absorption, followed by a discussion on the two frequently used method for deriving atmospheric parameters from high-resolution infrared atmospheric spectra, namely, the equivalent width

Remote measurement of atmospheric pollutants with laser techniques

Energy Technology Data Exchange (ETDEWEB)

Corio, W; Querzola, B; Zanzottera, E

1979-03-01

Laser techniques for the remote sensing of atmospheric pollutants are reviewed, with attention given to lidars based on Rayleigh and Mie scattering, the Raman effect, or fluorescent scattering. Emphasis is placed on differential absorption lidars, which rely on Rayleigh or Mie scattering for measurements made in the IR or in the visible-UV range, respectively. A comprehensive air pollution monitoring program based on differential absorption lidars, together with systems using fluorescent backscattering and absorption measurements with topographic backscattering, is described.

Radiation transfer and stellar atmospheres

Science.gov (United States)

Swihart, T. L.

This is a revised and expanded version of the author's Basic Physics of Stellar Atmospheres, published in 1971. The equation of transfer is considered, taking into account the intensity and derived quantities, the absorption coefficient, the emission coefficient, the source function, and special integrals for plane media. The gray atmosphere is discussed along with the nongray atmosphere, and aspects of line formation. Topics related to polarization are explored, giving attention to pure polarized radiation, general polarized radiation, transfer in a magnetic plasma, and Rayleigh scattering and the sunlit sky. Physical and astronomical constants, and a number of problems related to the subjects of the book are presented in an appendix.

Effect of water vapour absorption on hydroxyl temperatures measured from Svalbard

Directory of Open Access Journals (Sweden)

J. M. Chadney

2017-03-01

Full Text Available We model absorption by atmospheric water vapour of hydroxyl airglow emission using the HIgh-resolution TRANsmission molecular absorption database (HITRAN2012. Transmission coefficients are provided as a function of water vapour column density for the strongest OH Meinel emission lines in the (8–3, (5–1, (9–4, (8–4, and (6–2 vibrational bands. These coefficients are used to determine precise OH(8–3 rotational temperatures from spectra measured by the High Throughput Imaging Echelle Spectrograph (HiTIES, installed at the Kjell Henriksen Observatory (KHO, Svalbard. The method described in this paper also allows us to estimate atmospheric water vapour content using the HiTIES instrument.

Atmospheric Habitable Zones in Y Dwarf Atmospheres

Energy Technology Data Exchange (ETDEWEB)

Yates, Jack S.; Palmer, Paul I. [School of GeoSciences, University of Edinburgh (United Kingdom); Biller, Beth; Cockell, Charles S., E-mail: j.s.yates@ed.ac.uk [Centre for Exoplanet Science, University of Edinburgh (United Kingdom)

2017-02-20

We use a simple organism lifecycle model to explore the viability of an atmospheric habitable zone (AHZ), with temperatures that could support Earth-centric life, which sits above an environment that does not support life. To illustrate our model, we use a cool Y dwarf atmosphere, such as WISE J085510.83–0714442.5, whose 4.5–5.2 μ m spectrum shows absorption features consistent with water vapor and clouds. We allow organisms to adapt to their atmospheric environment (described by temperature, convection, and gravity) by adopting different growth strategies that maximize their chance of survival and proliferation. We assume a constant upward vertical velocity through the AHZ. We found that the organism growth strategy is most sensitive to the magnitude of the atmospheric convection. Stronger convection supports the evolution of more massive organisms. For a purely radiative environment, we find that evolved organisms have a mass that is an order of magnitude smaller than terrestrial microbes, thereby defining a dynamical constraint on the dimensions of life that an AHZ can support. Based on a previously defined statistical approach, we infer that there are of the order of 10{sup 9} cool Y brown dwarfs in the Milky Way, and likely a few tens of these objects are within 10 pc from Earth. Our work also has implications for exploring life in the atmospheres of temperate gas giants. Consideration of the habitable volumes in planetary atmospheres significantly increases the volume of habitable space in the galaxy.

Replicative Intermediates of Human Papillomavirus Type 11 in Laryngeal Papillomas: Site of Replication Initiation and Direction of Replication

Science.gov (United States)

Auborn, K. J.; Little, R. D.; Platt, T. H. K.; Vaccariello, M. A.; Schildkraut, C. L.

1994-07-01

We have examined the structures of replication intermediates from the human papillomavirus type 11 genome in DNA extracted from papilloma lesions (laryngeal papillomas). The sites of replication initiation and termination utilized in vivo were mapped by using neutral/neutral and neutral/alkaline two-dimensional agarose gel electrophoresis methods. Initiation of replication was detected in or very close to the upstream regulatory region (URR; the noncoding, regulatory sequences upstream of the open reading frames in the papillomavirus genome). We also show that replication forks proceed bidirectionally from the origin and converge 180circ opposite the URR. These results demonstrate the feasibility of analysis of replication of viral genomes directly from infected tissue.

Water vapor absorption coefficients in the 8-13-micron spectral region - A critical review

Science.gov (United States)

Grant, William B.

1990-01-01

Measurements of water vapor absorption coefficients in the thermal IR atmospheric window (8-13 microns) during the past 20 years obtained by a variety of techniques are reviewed for consistency and compared with computed values based on the AFGL spectral data tapes. The methods of data collection considered were atmospheric long path absorption with a CO2 laser or a broadband source and filters, a White cell and a CO2 laser or a broadband source and a spectrometer, and a spectrophone with a CO2 laser. Advantages and disadvantages of each measurement approach are given as a guide to further research. Continuum absorption has apparently been measured accurately to about the 5-10 percent level in five of the measurements reported.

DNA replication and cancer: From dysfunctional replication origin activities to therapeutic opportunities.

Science.gov (United States)

Boyer, Anne-Sophie; Walter, David; Sørensen, Claus Storgaard

2016-06-01

A dividing cell has to duplicate its DNA precisely once during the cell cycle to preserve genome integrity avoiding the accumulation of genetic aberrations that promote diseases such as cancer. A large number of endogenous impacts can challenge DNA replication and cells harbor a battery of pathways to promote genome integrity during DNA replication. This includes suppressing new replication origin firing, stabilization of replicating forks, and the safe restart of forks to prevent any loss of genetic information. Here, we describe mechanisms by which oncogenes can interfere with DNA replication thereby causing DNA replication stress and genome instability. Further, we describe cellular and systemic responses to these insults with a focus on DNA replication restart pathways. Finally, we discuss the therapeutic potential of exploiting intrinsic replicative stress in cancer cells for targeted therapy. Copyright © 2016 Elsevier Ltd. All rights reserved.

Modeling of intensity-modulated continuous-wave laser absorption spectrometer systems for atmospheric CO(2) column measurements.

Science.gov (United States)

Lin, Bing; Ismail, Syed; Wallace Harrison, F; Browell, Edward V; Nehrir, Amin R; Dobler, Jeremy; Moore, Berrien; Refaat, Tamer; Kooi, Susan A

2013-10-10

The focus of this study is to model and validate the performance of intensity-modulated continuous-wave (IM-CW) CO(2) laser absorption spectrometer (LAS) systems and their CO(2) column measurements from airborne and satellite platforms. The model accounts for all fundamental physics of the instruments and their related CO(2) measurement environments, and the modeling results are presented statistically from simulation ensembles that include noise sources and uncertainties related to the LAS instruments and the measurement environments. The characteristics of simulated LAS systems are based on existing technologies and their implementation in existing systems. The modeled instruments are specifically assumed to be IM-CW LAS systems such as the Exelis' airborne multifunctional fiber laser lidar (MFLL) operating in the 1.57 μm CO(2) absorption band. Atmospheric effects due to variations in CO(2), solar radiation, and thin clouds, are also included in the model. Model results are shown to agree well with LAS atmospheric CO(2) measurement performance. For example, the relative bias errors of both MFLL simulated and measured CO(2) differential optical depths were found to agree to within a few tenths of a percent when compared to the in situ observations from the flight of 3 August 2011 over Railroad Valley (RRV), Nevada, during the summer 2011 flight campaign. In addition, the horizontal variations in the model CO(2) differential optical depths were also found to be consistent with those from MFLL measurements. In general, the modeled and measured signal-to-noise ratios (SNRs) of the CO(2) column differential optical depths (τd) agreed to within about 30%. Model simulations of a spaceborne IM-CW LAS system in a 390 km dawn/dusk orbit for CO(2) column measurements showed that with a total of 42 W of transmitted power for one offline and two different sideline channels (placed at different locations on the side of the CO(2) absorption line), the accuracy of the �

Molecular line parameters for the atmospheric trace molecule spectroscopy experiment

Science.gov (United States)

Brown, L. R.; Farmer, C. B.; Toth, R. A.; Rinsland, Curtis P.

1987-01-01

During its first mission in 1985 onboard Spacelab 3, the ATMOS (atmospheric trace molecule spectroscopy) instrument, a high speed Fourier transform spectrometer, produced a large number of high resolution infrared solar absorption spectra recorded in the occultation mode. The analysis and interpretation of these data in terms of composition, chemistry, and dynamics of the earth's upper atmosphere required good knowledge of the molecular line parameters for those species giving rise to the absorptions in the atmospheric spectra. This paper describes the spectroscopic line parameter database compiled for the ATMOS experiment and referenced in other papers describing ATMOS results. With over 400,000 entries, the linelist catalogs parameters of 46 minor and trace species in the 1-10,000/cm region.

Recovering of images degraded by atmosphere

Science.gov (United States)

Lin, Guang; Feng, Huajun; Xu, Zhihai; Li, Qi; Chen, Yueting

2017-08-01

Remote sensing images are seriously degraded by multiple scattering and bad weather. Through the analysis of the radiative transfer procedure in atmosphere, an image atmospheric degradation model considering the influence of atmospheric absorption multiple scattering and non-uniform distribution is proposed in this paper. Based on the proposed model, a novel recovering method is presented to eliminate atmospheric degradation. Mean-shift image segmentation and block-wise deconvolution are used to reduce time cost, retaining a good result. The recovering results indicate that the proposed method can significantly remove atmospheric degradation and effectively improve contrast compared with other removal methods. The results also illustrate that our method is suitable for various degraded remote sensing, including images with large field of view (FOV), images taken in side-glance situations, image degraded by atmospheric non-uniform distribution and images with various forms of clouds.

Leaf absorption of 32P in the pumpkin

International Nuclear Information System (INIS)

Chamel, Andre; Roux-Aubert, M.T.

1964-04-01

The author presents a method to study the influence of various factors of the absorption of 32 P applied under the form of phosphates by a plant cultivated in conditions ensuring a normal development. Experiments provided indications on leaf absorption and 32 P transport by pumpkin leaves: phosphor 32 is absorbed and then quickly transported into the different organs of the plant (24 hours after treatment, it is present in aerial and underground parts), the quantity of absorbed phosphor increases with phosphor concentration in the applied solution, atmosphere humidity is an important factor for phosphor penetration into the leaves, plants absorb phosphor in darkness as well as in light, and the absorption of phosphor is not modified when applied with low glucose concentrations [fr

Multiple scattering theory of radiative transfer in inhomogeneous atmospheres.

Science.gov (United States)

Kanal, M.

1973-01-01

In this paper we treat the multiple scattering theory of radiative transfer in plane-parallel inhomogeneous atmospheres. The treatment presented here may be adopted to model atmospheres characterized by an optical depth dependent coherent scattering phase function. For the purpose of illustration we consider the semi-infinite medium in which the absorption property of the atmosphere is characterized by an exponential function. The methodology employed here is the extension of the case treated previously by the author for homogeneous atmospheres.

Line by Line CO2 Absorption in the Atmosphere for Input Data to Calculate Global Warming, David C. Smith, DCS Lasers & Optics LLC, Old Saybrook CT 06475

Science.gov (United States)

Smith, D. C.

2012-12-01

Compter modeling of global climate change require an input (asssumption) of the forcing function for CO2 absorption. All codes use a long term forcing function of ~ 4 W/M2. (IPCC 2007 Summary for Policymakers. In:Climate Change 2007. The Physical Sciences Basis.Contributions of Working Group 1 to the Fourth Assessment Report of the IPCC, Cambridge U. Press N.Y.)..This is based on a band model of the CO2 rotational/vibrational absorption where a band of absorption averages over all the rotational levels of the vibration transition. (Ramananathan,V.,et al, J. of Geophysical Research,Vol 84 C8,p4949,Aug.1979).. The model takes into account the line width,the spacing between lines and identifies 10 CO2 bands.. This approach neglects the possibility that the peak absorption transitions in a band can "use up" all of the earths IR radiation at that wavelength and does not contribute to global warming no matter how much the CO2 is increased. The lines in the wings of a band increase their absorption as the CO2 is increased. However, the lines that are lost are the strong absorbers and those that are added are the weaker absorption lines. When a band begins to use up the IR then the net result of increasing the atmospheric CO2 is a decrease in the absorption change. This presentation calculates the absorption of each line individualy using the Behr's Law Approach. The dependence of the absorption and line width of each transition as a function of altitude is accounted for. The temperature dependence of the absorption with altitude is not and an evaluation of this error is given. For doubling CO2 from 320ppm to 640 ppm, the calculation gives a forcing function of 1.1 W/M2. The results show the importance of using individual lines to calculate the CO2 contribution to global warming, We can speculate on the imact and anticipate a computer code calculation of a factor of 4 less global warming than the published results.

Exoplanet atmospheres physical processes

CERN Document Server

Seager, Sara

2010-01-01

Over the past twenty years, astronomers have identified hundreds of extrasolar planets--planets orbiting stars other than the sun. Recent research in this burgeoning field has made it possible to observe and measure the atmospheres of these exoplanets. This is the first textbook to describe the basic physical processes--including radiative transfer, molecular absorption, and chemical processes--common to all planetary atmospheres, as well as the transit, eclipse, and thermal phase variation observations that are unique to exoplanets. In each chapter, Sara Seager offers a conceptual introduction, examples that combine the relevant physics equations with real data, and exercises. Topics range from foundational knowledge, such as the origin of atmospheric composition and planetary spectra, to more advanced concepts, such as solutions to the radiative transfer equation, polarization, and molecular and condensate opacities. Since planets vary widely in their atmospheric properties, Seager emphasizes the major p...

Absolute absorption cross-section and photolysis rate of I2

Directory of Open Access Journals (Sweden)

A. Saiz-Lopez

2004-01-01

Full Text Available Following recent observations of molecular iodine (I2 in the coastal marine boundary layer (MBL (Saiz-Lopez and Plane, 2004, it has become important to determine the absolute absorption cross-section of I2 at reasonably high resolution, and also to evaluate the rate of photolysis of the molecule in the lower atmosphere. The absolute absorption cross-section (σ of gaseous I2 at room temperature and pressure (295K, 760Torr was therefore measured between 182 and 750nm using a Fourier Transform spectrometer at a resolution of 4cm-1 (0.1nm at λ=500nm. The maximum absorption cross-section in the visible region was observed at λ=533.0nm to be σ=(4.24±0.50x10-18cm2molecule-1. The spectrum is available as supplementary material accompanying this paper. The photo-dissociation rate constant (J of gaseous I2 was also measured directly in a solar simulator, yielding J(I2=0.12±0.03s-1 for the lower troposphere. This is in excellent agreement with the value of 0.12±0.015s-1 calculated using the measured absorption cross-section, terrestrial solar flux for clear sky conditions and assuming a photo-dissociation yield of unity. A two-stream radiation transfer model was then used to determine the variation in photolysis rate with solar zenith angle (SZA, from which an analytic expression is derived for use in atmospheric models. Photolysis appears to be the dominant loss process for I2 during daytime, and hence an important source of iodine atoms in the lower atmosphere.

Assessment of the performance of a compact concentric spectrometer system for Atmospheric Differential Optical Absorption Spectroscopy

Science.gov (United States)

Whyte, C.; Leigh, R. J.; Lobb, D.; Williams, T.; Remedios, J. J.; Cutter, M.; Monks, P. S.

2009-12-01

A breadboard demonstrator of a novel UV/VIS grating spectrometer has been developed based upon a concentric arrangement of a spherical meniscus lens, concave spherical mirror and curved diffraction grating suitable for a range of atmospheric remote sensing applications from the ground or space. The spectrometer is compact and provides high optical efficiency and performance benefits over traditional instruments. The concentric design is capable of handling high relative apertures, owing to spherical aberration and comma being near zero at all surfaces. The design also provides correction for transverse chromatic aberration and distortion, in addition to correcting for the distortion called "smile", the curvature of the slit image formed at each wavelength. These properties render this design capable of superior spectral and spatial performance with size and weight budgets significantly lower than standard configurations. This form of spectrometer design offers the potential for exceptionally compact instrument for differential optical absorption spectroscopy (DOAS) applications from LEO, GEO, HAP or ground-based platforms. The breadboard demonstrator has been shown to offer high throughput and a stable Gaussian line shape with a spectral range from 300 to 450 nm at 0.5 nm resolution, suitable for a number of typical DOAS applications.

Atmospheric aerosol and gas sensing using Scheimpflug lidar

Science.gov (United States)

Mei, Liang; Brydegaard, Mikkel

2015-04-01

This work presents a new lidar technique for atmospheric remote sensing based on Scheimpflug principle, which describes the relationship between nonparallel image- and object-planes[1]. When a laser beam is transmitted into the atmosphere, the implication is that the backscattering echo of the entire illuminated probe volume can be in focus simultaneously without diminishing the aperture. The range-resolved backscattering echo can be retrieved by using a tilted line scan or two-dimensional CCD/CMOS camera. Rather than employing nanosecond-pulsed lasers, cascade detectors, and MHz signal sampling, all of high cost and complexity, we have developed a robust and inexpensive atmospheric lidar system based on compact laser diodes and array detectors. We present initial applications of the Scheimpflug lidar for atmospheric aerosol monitoring in bright sunlight, with a 3 W, 808 nm CW laser diode. Kilohertz sampling rates are also achieved with applications for wind speed and entomology [2]. Further, a proof-of-principle demonstration of differential absorption lidar (DIAL) based on the Scheimpflug lidar technique is presented [3]. By utilizing a 30 mW narrow band CW laser diode emitting at around 760 nm, the detailed shape of an oxygen absorption line can be resolved remotely with an integration time of 6 s and measurement cycle of 1 minute during night time. The promising results demonstrated in this work show potential for the Scheimpflug lidar technique for remote atmospheric aerosol and gas sensing, and renews hope for robust and realistic instrumentation for atmospheric lidar sensing. [1] F. Blais, "Review of 20 years of range sensor development," Journal of Electronic Imaging, vol. 13, pp. 231-243, Jan 2004. [2] M. Brydegaard, A. Gebru, and S. Svanberg, "Super resolution laser radar with blinking atmospheric particles - application to interacting flying insects " Progress In Electromagnetics Research, vol. 147, pp. 141-151, 2014. [3] L. Mei and M. Brydegaard

NAMMA LIDAR ATMOSPHERIC SENSING EXPERIMENT (LASE) V1

Data.gov (United States)

National Aeronautics and Space Administration — NASA's Lidar Atmospheric Sensing Experiment (LASE) system using the DIAL (Differential Absorption Lidar) system was operated during the NASA African Monsoon...

Comparison of atmospheric microplasma and plasma jet irradiation for increasing of skin permeability

International Nuclear Information System (INIS)

Shimizu, K; Tran, N A; Hayashida, K; Blajan, M

2016-01-01

Atmospheric plasma is attracting interest for medical applications such as sterilization, treatment of cancer cells and blood coagulation. Application of atmospheric plasma in dermatology has potential as a novel tool for wound healing, skin rejuvenation and treatment of wrinkles. In this study, we investigated the enhancement of percutaneous absorption of dye as alternative agents of transdermal drugs. Hypodermic needles are often the only way to deliver large-molecule drugs into the dermis, although a safe transdermal drug delivery method that does not require needles would be desirable. We therefore explored the feasibility of using atmospheric microplasma irradiation to enhance percutaneous absorption of drugs, as an alternative delivery method to conventional hypodermic needles. Pig skin was used as a biological sample, exposed to atmospheric microplasma, and analyzed by attenuated total reflection-Fourier transform infrared spectroscopy. A tape stripping test, a representative method for evaluating skin barrier performance, was also conducted for comparison. Transepidermal water loss (TEWL) was measured and compared with and without atmospheric microplasma irradiation, to quantify water evaporation from the inner body through the skin barrier. The results show that the stratum corneum, the outermost skin layer, could be chemically and physically modified by atmospheric microplasma irradiation. Physical damage to the skin by microplasma irradiation and an atmospheric plasma jet was also assessed by observing the skin surface. The results suggest that atmospheric microplasma has the potential to enhance percutaneous absorption. (paper)

Broken-cloud enhancement of solar radiation absorption

Energy Technology Data Exchange (ETDEWEB)

Byrne, R.N. [Science Applications International Corporation, San Diego, CA (United States); Somerville, R.C. [Univ. of California, La Jolla, CA (United States); Subasilar, B. [Curtain Univ. of Technology, Perth (Australia)

1996-04-01

Two papers recently published in Science have shown that there is more absorption of solar radiation than estimated by current atmospheric general circulation models (GCMs) and that the discrepancy is associated with cloudy scenes. We have devised a simple model which explains this as an artifact of stochastic radiative transport. We first give a heuristic description, unencumbered by mathematical detail. Consider a simple case with clouds distributed at random within a single level whose upper and lower boundaries are fixed. The solar zenith angle is small to moderate; this is therefore an energetically important case. Fix the average areal liquid water content of the cloud layer, and take the statistics of the cloud distribution to be homogeneous within the layer. Furthermore, assume that all the clouds in the layer have the same liquid water content, constant throughout the cloud, and that apart from their droplet content they are identical to the surrounding clear sky. Let the clouds occupy on the average a fraction p{sub cld} of the volume of the cloudy layer, and let them have a prescribed distribution of sizes about some mean. This is not a fractal distribution, because it has a scale. Cloud shape is unimportant so long as cloud aspect ratios are not far from unity. Take the single-scattering albedo to be unity for the droplets in the clouds. All of the absorption is due to atmospheric gases, so the absorption coefficient at a point is the same for cloud and clear sky. Absorption by droplets is less than 10% effect in the numerical stochastic radiation calculations described below, so it is reasonable to neglect it at this level of idealization.

Airborne Lidar Measurements of Atmospheric Pressure Made Using the Oxygen A-Band

Science.gov (United States)

Riris, Haris; Rodriquez, Michael D.; Allan, Graham R.; Hasselbrack, William E.; Mao, Jianping; Stephen, Mark A.; Abshire, James B.

2012-01-01

Accurate measurements of greenhouse gas mixing ratios on a global scale are currently needed to gain a better understanding of climate change and its possible impact on our planet. In order to remotely measure greenhouse gas concentrations in the atmosphere with regard to dry air, the air number density in the atmosphere is also needed in deriving the greenhouse gas concentrations. Since oxygen is stable and uniformly mixed in the atmosphere at 20.95%, the measurement of an oxygen absorption in the atmosphere can be used to infer the dry air density and used to calculate the dry air mixing ratio of a greenhouse gas, such as carbon dioxide or methane. OUT technique of measuring Oxygen uses integrated path differential absorption (IPDA) with an Erbium Doped Fiber Amplifier (EDF A) laser system and single photon counting module (SPCM). It measures the absorbance of several on- and off-line wavelengths tuned to an O2 absorption line in the A-band at 764.7 nm. The choice of wavelengths allows us to maximize the pressure sensitivity using the trough between two absorptions in the Oxygen A-band. Our retrieval algorithm uses ancillary meteorological and aircraft altitude information to fit the experimentally obtained lidar O2 line shapes to a model atmosphere and derives the pressure from the profiles of the two lines. We have demonstrated O2 measurements from the ground and from an airborne platform. In this paper we will report on our airborne measurements during our 2011 campaign for the ASCENDS program.

Repair replication in replicating and nonreplicating DNA after irradiation with uv light

Energy Technology Data Exchange (ETDEWEB)

Slor, H.; Cleaver, J.E.

1978-06-01

Ultraviolet light induces more pyrimidine dimers and more repair replication in DNA that replicates within 2 to 3 h of irradiation than in DNA that does not replicate during this period. This difference may be due to special conformational changes in DNA and chromatin that might be associated with semiconservative DNA replication.

Association of radiowave absorption with E(sporadic)-activity

International Nuclear Information System (INIS)

Ganguly, S.

1975-01-01

Noontime radiowave absorption data for frequencies which are reflected below the height of sporadic-E layers show a strong positive correlation with the sporadic-E layer activity. The possibilities of atmospheric waves affecting both the sporadic-E activity as well as mesospheric ionization are suggested to explain this association

Atmospheric Electricity

Science.gov (United States)

Aplin, Karen; Fischer, Georg

2018-02-01

Electricity occurs in atmospheres across the Solar System planets and beyond, spanning spectacular lightning displays in clouds of water or dust, to more subtle effects of charge and electric fields. On Earth, lightning is likely to have existed for a long time, based on evidence from fossilized lightning strikes in ancient rocks, but observations of planetary lightning are necessarily much more recent. The generation and observations of lightning and other atmospheric electrical processes, both from within-atmosphere measurements, and spacecraft remote sensing, can be readily studied using a comparative planetology approach, with Earth as a model. All atmospheres contain charged molecules, electrons, and/or molecular clusters created by ionization from cosmic rays and other processes, which may affect an atmosphere's energy balance both through aerosol and cloud formation, and direct absorption of radiation. Several planets are anticipated to host a "global electric circuit" by analogy with the circuit occurring on Earth, where thunderstorms drive current of ions or electrons through weakly conductive parts of the atmosphere. This current flow may further modulate an atmosphere's radiative properties through cloud and aerosol effects. Lightning could potentially have implications for life through its effects on atmospheric chemistry and particle transport. It has been observed on many of the Solar System planets (Earth, Jupiter, Saturn, Uranus, and Neptune) and it may also be present on Venus and Mars. On Earth, Jupiter, and Saturn, lightning is thought to be generated in deep water and ice clouds, but discharges can be generated in dust, as for terrestrial volcanic lightning, and on Mars. Other, less well-understood mechanisms causing discharges in non-water clouds also seem likely. The discovery of thousands of exoplanets has recently led to a range of further exotic possibilities for atmospheric electricity, though lightning detection beyond our Solar System

Human Parvovirus B19 Utilizes Cellular DNA Replication Machinery for Viral DNA Replication.

Science.gov (United States)

Zou, Wei; Wang, Zekun; Xiong, Min; Chen, Aaron Yun; Xu, Peng; Ganaie, Safder S; Badawi, Yomna; Kleiboeker, Steve; Nishimune, Hiroshi; Ye, Shui Qing; Qiu, Jianming

2018-03-01

Human parvovirus B19 (B19V) infection of human erythroid progenitor cells (EPCs) induces a DNA damage response and cell cycle arrest at late S phase, which facilitates viral DNA replication. However, it is not clear exactly which cellular factors are employed by this single-stranded DNA virus. Here, we used microarrays to systematically analyze the dynamic transcriptome of EPCs infected with B19V. We found that DNA metabolism, DNA replication, DNA repair, DNA damage response, cell cycle, and cell cycle arrest pathways were significantly regulated after B19V infection. Confocal microscopy analyses revealed that most cellular DNA replication proteins were recruited to the centers of viral DNA replication, but not the DNA repair DNA polymerases. Our results suggest that DNA replication polymerase δ and polymerase α are responsible for B19V DNA replication by knocking down its expression in EPCs. We further showed that although RPA32 is essential for B19V DNA replication and the phosphorylated forms of RPA32 colocalized with the replicating viral genomes, RPA32 phosphorylation was not necessary for B19V DNA replication. Thus, this report provides evidence that B19V uses the cellular DNA replication machinery for viral DNA replication. IMPORTANCE Human parvovirus B19 (B19V) infection can cause transient aplastic crisis, persistent viremia, and pure red cell aplasia. In fetuses, B19V infection can result in nonimmune hydrops fetalis and fetal death. These clinical manifestations of B19V infection are a direct outcome of the death of human erythroid progenitors that host B19V replication. B19V infection induces a DNA damage response that is important for cell cycle arrest at late S phase. Here, we analyzed dynamic changes in cellular gene expression and found that DNA metabolic processes are tightly regulated during B19V infection. Although genes involved in cellular DNA replication were downregulated overall, the cellular DNA replication machinery was tightly

MOF Suppresses Replication Stress and Contributes to Resolution of Stalled Replication Forks.

Science.gov (United States)

Singh, Dharmendra Kumar; Pandita, Raj K; Singh, Mayank; Chakraborty, Sharmistha; Hambarde, Shashank; Ramnarain, Deepti; Charaka, Vijaya; Ahmed, Kazi Mokim; Hunt, Clayton R; Pandita, Tej K

2018-03-15

The human MOF (hMOF) protein belongs to the MYST family of histone acetyltransferases and plays a critical role in transcription and the DNA damage response. MOF is essential for cell proliferation; however, its role during replication and replicative stress is unknown. Here we demonstrate that cells depleted of MOF and under replicative stress induced by cisplatin, hydroxyurea, or camptothecin have reduced survival, a higher frequency of S-phase-specific chromosome damage, and increased R-loop formation. MOF depletion decreased replication fork speed and, when combined with replicative stress, also increased stalled replication forks as well as new origin firing. MOF interacted with PCNA, a key coordinator of replication and repair machinery at replication forks, and affected its ubiquitination and recruitment to the DNA damage site. Depletion of MOF, therefore, compromised the DNA damage repair response as evidenced by decreased Mre11, RPA70, Rad51, and PCNA focus formation, reduced DNA end resection, and decreased CHK1 phosphorylation in cells after exposure to hydroxyurea or cisplatin. These results support the argument that MOF plays an important role in suppressing replication stress induced by genotoxic agents at several stages during the DNA damage response. Copyright © 2018 American Society for Microbiology.

Database Replication

CERN Document Server

Kemme, Bettina

2010-01-01

Database replication is widely used for fault-tolerance, scalability and performance. The failure of one database replica does not stop the system from working as available replicas can take over the tasks of the failed replica. Scalability can be achieved by distributing the load across all replicas, and adding new replicas should the load increase. Finally, database replication can provide fast local access, even if clients are geographically distributed clients, if data copies are located close to clients. Despite its advantages, replication is not a straightforward technique to apply, and

Aspects of airborne particles and radiation in the atmosphere

International Nuclear Information System (INIS)

Hidy, G.M.

1975-01-01

There are two major ways that thermal radiation may interact with airborne particles in the Earth's atmosphere. The first is a classical problem in which the radiation balance is influenced by scattering and absorption from haze or aerosol layers in the atmosphere. Absorption is generally believed to have a minor effect on attenuation of radiation compared with scattering. In the visible and infrared, scattering by submicron sized particles can have a substantial influence on the balance of radiation in the atmosphere. Considerable interest in this question has developed recently with the assessment of the global impact of air pollution in the lower atmosphere and of exhaust emissions from aircraft flying in the stratosphere. In the first part of this review, the physics of atmospheric aerosol scattering is summarized, and the current status of observational knowledge is examined to identify areas of greatest uncertainty. The second way the radiation is involved in aerosols lies in the production in the atmosphere. Until recently, evidence for airborne particle production by atmospheric photochemistry was quite ambiguous. However, with the advent of results from several new field experiments the role of photochemistry in the generation of aerosol precursors from traces of such gases as sulfur dioxide, nitrogen oxides, and olefinic hydrocarbons is much better understood. The remaining part of this paper is devoted to the discussion of several new observations that indicate the complicated nature of photochemical aerosol formation in the polluted and non-polluted atmosphere

NAMMA LIDAR ATMOSPHERIC SENSING EXPERIMENT (LASE) V1

Data.gov (United States)

National Aeronautics and Space Administration — The NAMMA Lidar Atmospheric Sensing Experiment (LASE) dataset used the LASE system using the Differential Absorption Lidar (DIAL) system was operated during the NASA...

Airborne differential absorption lidar system for water vapor investigations

Science.gov (United States)

Browell, E. V.; Carter, A. F.; Wilkerson, T. D.

1981-01-01

Range-resolved water vapor measurements using the differential-absorption lidar (DIAL) technique is described in detail. The system uses two independently tunable optically pumped lasers operating in the near infrared with laser pulses of less than 100 microseconds separation, to minimize concentration errors caused by atmospheric scattering. Water vapor concentration profiles are calculated for each measurement by a minicomputer, in real time. The work is needed in the study of atmospheric motion and thermodynamics as well as in forestry and agriculture problems.

Temperature-dependent mid-IR absorption spectra of gaseous hydrocarbons

International Nuclear Information System (INIS)

Klingbeil, Adam E.; Jeffries, Jay B.; Hanson, Ronald K.

2007-01-01

Quantitative mid-IR absorption spectra (2500-3400 cm -1 ) for 12 pure hydrocarbon compounds are measured at temperatures ranging from 25 to 500 deg. C using an FTIR spectrometer. The hydrocarbons studied are n-pentane, n-heptane, n-dodecane, 2,2,4-trimethyl-pentane (iso-octane), 2-methyl-butane, 2-methyl-pentane, 2,4,4-trimethyl-1-pentene, 2-methyl-2-butene, propene, toluene, m-xylene, and ethylbenzene. Room-temperature measurements of neat hydrocarbon vapor were made with an instrument resolution of both 0.1 and 1 cm -1 (FWHM) to confirm that the high-resolution setting was required only to resolve the propene absorption spectrum while the spectra of the other hydrocarbons could be resolved with 1 cm -1 resolution. High-resolution (0.1 cm -1 ), room-temperature measurements of neat hydrocarbons were made at low pressure (∼1 Torr, 133 Pa) and compared to measurements of hydrocarbon/N 2 mixtures at atmospheric pressure to verify that no pressure broadening could be observed over this pressure range. The temperature was varied between 25 and 500 o C for atmospheric-pressure measurements of hydrocarbon/N 2 mixtures (X hydrocarbon ∼0.06-1.5%) and it was found that the absorption cross section shows simple temperature-dependent behavior for a fixed wavelength over this temperature range. Comparisons with previous FTIR data over a limited temperature range and with high-resolution laser absorption data over a wide temperature range show good agreement

X-irradiation affects all DNA replication intermediates when inhibiting replication initiation

International Nuclear Information System (INIS)

Loenn, U.; Karolinska Hospital, Stockholm

1982-01-01

When a human melanoma line was irradiated with 10 Gy, there was, after 30 to 60 min, a gradual reduction in the DNA replication rate. Ten to twelve hours after the irradiation, the DNA replication had returned to near normal rate. The results showed tht low dose-rate X-irradiation inhibits preferentially the formation of small DNA replication intermediates. There is no difference between the inhibition of these replication intermediates formed only in the irradiated cells and those formed also in untreated cells. (U.K.)

A k-distribution-based radiation code and its computational optimization for an atmospheric general circulation model

International Nuclear Information System (INIS)

Sekiguchi, Miho; Nakajima, Teruyuki

2008-01-01

The gas absorption process scheme in the broadband radiative transfer code 'mstrn8', which is used to calculate atmospheric radiative transfer efficiently in a general circulation model, is improved. Three major improvements are made. The first is an update of the database of line absorption parameters and the continuum absorption model. The second is a change to the definition of the selection rule for gas absorption used to choose which absorption bands to include. The last is an upgrade of the optimization method used to decrease the number of quadrature points used for numerical integration in the correlated k-distribution approach, thereby realizing higher computational efficiency without losing accuracy. The new radiation package termed 'mstrnX' computes radiation fluxes and heating rates with errors less than 0.6 W/m 2 and 0.3 K/day, respectively, through the troposphere and the lower stratosphere for any standard AFGL atmospheres. A serious cold bias problem of an atmospheric general circulation model using the ancestor code 'mstrn8' is almost solved by the upgrade to 'mstrnX'

Chromatin Structure and Replication Origins: Determinants Of Chromosome Replication And Nuclear Organization

Science.gov (United States)

Smith, Owen K.; Aladjem, Mirit I.

2014-01-01

The DNA replication program is, in part, determined by the epigenetic landscape that governs local chromosome architecture and directs chromosome duplication. Replication must coordinate with other biochemical processes occurring concomitantly on chromatin, such as transcription and remodeling, to insure accurate duplication of both genetic and epigenetic features and to preserve genomic stability. The importance of genome architecture and chromatin looping in coordinating cellular processes on chromatin is illustrated by two recent sets of discoveries. First, chromatin-associated proteins that are not part of the core replication machinery were shown to affect the timing of DNA replication. These chromatin-associated proteins could be working in concert, or perhaps in competition, with the transcriptional machinery and with chromatin modifiers to determine the spatial and temporal organization of replication initiation events. Second, epigenetic interactions are mediated by DNA sequences that determine chromosomal replication. In this review we summarize recent findings and current models linking spatial and temporal regulation of the replication program with epigenetic signaling. We discuss these issues in the context of the genome’s three-dimensional structure with an emphasis on events occurring during the initiation of DNA replication. PMID:24905010

Water vapor spectroscopy in the 815-nm wavelength region for Differential Absorption Lidar measurements

Science.gov (United States)

Ponsardin, Patrick; Browell, Edward V.

1995-01-01

The differential absorption lidar (DIAL) technique was first applied to the remote measurement of atmospheric water vapor profiles from airborne platforms in 1981. The successful interpretation of the lidar profiles relies strongly on an accurate knowledge of specific water vapor absorption line parameters: line strength, pressure broadening coefficient, pressure-induced shift coefficient and the respective temperature-dependence factors. NASA Langley Research Center has developed and is currently testing an autonomous airborne water vapor lidar system: LASE (Lidar Atmospheric Sensing Experiment). This DIAL system uses a Nd:YAG-pumped Ti:Sapphire laser seeded by a diode laser as a lidar transmitter. The tunable diode has been selected to operate in the 813-818 nm wavelength region. This 5-nm spectral interval offers a large distribution of strengths for temperature-insensitive water vapor absorption lines. In support of the LASE project, a series of spectroscopic measurements were conducted for the 16 absorption lines that have been identified for use in the LASE measurements. Prior to this work, the experimental data for this water vapor absorption band were limited - to our knowledge - to the line strengths and to the line positions.

Prelife catalysts and replicators

OpenAIRE

Ohtsuki, Hisashi; Nowak, Martin A.

2009-01-01

Life is based on replication and evolution. But replication cannot be taken for granted. We must ask what there was prior to replication and evolution. How does evolution begin? We have proposed prelife as a generative system that produces information and diversity in the absence of replication. We model prelife as a binary soup of active monomers that form random polymers. ‘Prevolutionary’ dynamics can have mutation and selection prior to replication. Some sequences might have catalytic acti...

Data from Investigating Variation in Replicability: A “Many Labs” Replication Project

Directory of Open Access Journals (Sweden)

Richard A. Klein

2014-04-01

Full Text Available This dataset is from the Many Labs Replication Project in which 13 effects were replicated across 36 samples and over 6,000 participants. Data from the replications are included, along with demographic variables about the participants and contextual information about the environment in which the replication was conducted. Data were collected in-lab and online through a standardized procedure administered via an online link. The dataset is stored on the Open Science Framework website. These data could be used to further investigate the results of the included 13 effects or to study replication and generalizability more broadly.

Linearized vector radiative transfer model MCC++ for a spherical atmosphere

International Nuclear Information System (INIS)

Postylyakov, O.V.

2004-01-01

Application of radiative transfer models has shown that optical remote sensing requires extra characteristics of radiance field in addition to the radiance intensity itself. Simulation of spectral measurements, analysis of retrieval errors and development of retrieval algorithms are in need of derivatives of radiance with respect to atmospheric constituents under investigation. The presented vector spherical radiative transfer model MCC++ was linearized, which allows the calculation of derivatives of all elements of the Stokes vector with respect to the volume absorption coefficient simultaneously with radiance calculation. The model MCC++ employs Monte Carlo algorithm for radiative transfer simulation and takes into account aerosol and molecular scattering, gas and aerosol absorption, and Lambertian surface albedo. The model treats a spherically symmetrical atmosphere. Relation of the estimated derivatives with other forms of radiance derivatives: the weighting functions used in gas retrieval and the air mass factors used in the DOAS retrieval algorithms, is obtained. Validation of the model against other radiative models is overviewed. The computing time of the intensity for the MCC++ model is about that for radiative models treating sphericity of the atmosphere approximately and is significantly shorter than that for the full spherical models used in the comparisons. The simultaneous calculation of all derivatives (i.e. with respect to absorption in all model atmosphere layers) and the intensity is only 1.2-2 times longer than the calculation of the intensity only

Black Carbon Absorption at the Global Scale Is Affected by Particle-Scale Diversity in Composition

Science.gov (United States)

Fierce, Laura; Bond, Tami C.; Bauer, Susanne E.; Mena, Francisco; Riemer, Nicole

2016-01-01

Atmospheric black carbon (BC) exerts a strong, but uncertain, warming effect on the climate. BC that is coated with non-absorbing material absorbs more strongly than the same amount of BC in an uncoated particle, but the magnitude of this absorption enhancement (E(sub abs)) is not well constrained. Modelling studies and laboratory measurements have found stronger absorption enhancement than has been observed in the atmosphere. Here, using a particle-resolved aerosol model to simulate diverse BC populations, we show that absorption is overestimated by as much as a factor of two if diversity is neglected and population-averaged composition is assumed across all BC-containing particles. If, instead, composition diversity is resolved, we find E(sub abs) = 1 - 1.5 at low relative humidity, consistent with ambient observations. This study offers not only an explanation for the discrepancy between modelled and observed absorption enhancement, but also demonstrates how particle-scale simulations can be used to develop relationships for global-scale models.

Absorption of solar energy heats up our planet's surface and the atmosphere and makes life for us po

Science.gov (United States)

2002-01-01

Credit: Image courtesy Barbara Summey, NASA Goddard Visualization Analysis Lab, based upon data processed by Takmeng Wong, CERES Science Team, NASA Langley Research Center Satellite: Terra Sensor: CERES Image Date: 09-30-2001 VE Record ID: 11546 Description: Absorption of solar energy heats up our planet's surface and the atmosphere and makes life for us possible. But the energy cannot stay bound up in the Earth's environment forever. If it did then the Earth would be as hot as the Sun. Instead, as the surface and the atmosphere warm, they emit thermal longwave radiation, some of which escapes into space and allows the Earth to cool. This false-color image of the Earth was produced on September 30, 2001, by the Clouds and the Earth's Radiant Energy System (CERES) instrument flying aboard NASA's Terra spacecraft. The image shows where more or less heat, in the form of longwave radiation, is emanating from the top of Earth's atmosphere. As one can see in the image, the thermal radiation leaving the oceans is fairly uniform. The blue swaths across the central Pacific represent thick clouds, the tops of which are so high they are among the coldest places on Earth. In the American Southwest, which can be seen in the upper righthand corner of the globe, there is often little cloud cover to block outgoing radiation and relatively little water to absorb solar energy. Consequently, the amount of outgoing radiation in the American Southwest exceeds that of the oceans. Also, that region was experiencing an extreme heatwave when these data were acquired. Recently, NASA researchers discovered that incoming solar radiation and outgoing thermal radiation increased in the tropics from the 1980s to the 1990s. (Click to read the press release .) They believe that the reason for the unexpected increase has to do with an apparent change in circulation patterns around the globe, which effectively reduced the amount of water vapor and cloud cover in the upper reaches of the atmosphere

Development of an Airborne Triple-Pulse 2-Micron Integrated Path Differential Absorption Lidar (IPDA) for Simultaneous Airborne Column Measurements of Carbon Dioxide and Water Vapor in the Atmosphere

Science.gov (United States)

Singh, Upendra N.; Petros, Mulugeta; Refaat, Tamer F.; Yu, Jirong; Antill, Charles W.; Remus, Ruben

2016-01-01

This presentation will provide status and details of an airborne 2-micron triple-pulse integrated path differential absorption (IPDA) lidar being developed at NASA Langley Research Center with support from NASA ESTO Instrument Incubator Program. The development of this active optical remote sensing IPDA instrument is targeted for measuring both atmospheric carbon dioxide and water vapor in the atmosphere from an airborne platform. This presentation will focus on the advancement of the 2-micron triple-pulse IPDA lidar development. Updates on the state-of-the-art triple-pulse laser transmitter will be presented including the status of seed laser locking, wavelength control, receiver and detector upgrades, laser packaging and lidar integration. Future plan for IPDA lidar system for ground integration, testing and flight validation will also be presented.

Speciation of copper and zinc in size-fractionated atmospheric particulate matter using total reflection mode X-ray absorption near-edge structure spectrometry

International Nuclear Information System (INIS)

Osan, Janos; Meirer, Florian; Groma, Veronika; Toeroek, Szabina; Ingerle, Dieter; Streli, Christina; Pepponi, Giancarlo

2010-01-01

The health effects of aerosol depend on the size distribution and the chemical composition of the particles. Heavy metals of anthropogenic origin are bound to the fine aerosol fraction (PM 2.5 ). The composition and speciation of aerosol particles can be variable in time, due to the time-dependence of anthropogenic sources as well as meteorological conditions. Synchrotron-radiation total reflection X-ray fluorescence (SR-TXRF) provides very high sensitivity for characterization of atmospheric particulate matter. X-ray absorption near-edge structure (XANES) spectrometry in conjunction with TXRF detection can deliver speciation information on heavy metals in aerosol particles collected directly on the reflector surface. The suitability of TXRF-XANES for copper and zinc speciation in size-fractionated atmospheric particulate matter from a short sampling period is presented. For high size resolution analysis, atmospheric aerosol particles were collected at different urban and rural locations using a 7-stage May cascade impactor having adapted for sampling on Si wafers. The thin stripe geometry formed by the particulate matter deposited on the May-impactor plates is ideally suited to SR-TXRF. Capabilities of the combination of the May-impactor sampling and TXRF-XANES measurements at HASYLAB Beamline L to Cu and Zn speciation in size-fractionated atmospheric particulate matter are demonstrated. Information on Cu and Zn speciation could be performed for elemental concentrations as low as 140 pg/m 3 . The Cu and Zn speciation in the different size fraction was found to be very distinctive for samples of different origin. Zn and Cu chemical state typical for soils was detected only in the largest particles studied (2-4 μm fraction). The fine particles, however, contained the metals of interest in the sulfate and nitrate forms.

Functions of Ubiquitin and SUMO in DNA Replication and Replication Stress

Science.gov (United States)

García-Rodríguez, Néstor; Wong, Ronald P.; Ulrich, Helle D.

2016-01-01

Complete and faithful duplication of its entire genetic material is one of the essential prerequisites for a proliferating cell to maintain genome stability. Yet, during replication DNA is particularly vulnerable to insults. On the one hand, lesions in replicating DNA frequently cause a stalling of the replication machinery, as most DNA polymerases cannot cope with defective templates. This situation is aggravated by the fact that strand separation in preparation for DNA synthesis prevents common repair mechanisms relying on strand complementarity, such as base and nucleotide excision repair, from working properly. On the other hand, the replication process itself subjects the DNA to a series of hazardous transformations, ranging from the exposure of single-stranded DNA to topological contortions and the generation of nicks and fragments, which all bear the risk of inducing genomic instability. Dealing with these problems requires rapid and flexible responses, for which posttranslational protein modifications that act independently of protein synthesis are particularly well suited. Hence, it is not surprising that members of the ubiquitin family, particularly ubiquitin itself and SUMO, feature prominently in controlling many of the defensive and restorative measures involved in the protection of DNA during replication. In this review we will discuss the contributions of ubiquitin and SUMO to genome maintenance specifically as they relate to DNA replication. We will consider cases where the modifiers act during regular, i.e., unperturbed stages of replication, such as initiation, fork progression, and termination, but also give an account of their functions in dealing with lesions, replication stalling and fork collapse. PMID:27242895

Assessment of the performance of a compact concentric spectrometer system for Atmospheric Differential Optical Absorption Spectroscopy

Directory of Open Access Journals (Sweden)

C. Whyte

2009-12-01

Full Text Available A breadboard demonstrator of a novel UV/VIS grating spectrometer has been developed based upon a concentric arrangement of a spherical meniscus lens, concave spherical mirror and curved diffraction grating suitable for a range of atmospheric remote sensing applications from the ground or space. The spectrometer is compact and provides high optical efficiency and performance benefits over traditional instruments. The concentric design is capable of handling high relative apertures, owing to spherical aberration and comma being near zero at all surfaces. The design also provides correction for transverse chromatic aberration and distortion, in addition to correcting for the distortion called "smile", the curvature of the slit image formed at each wavelength. These properties render this design capable of superior spectral and spatial performance with size and weight budgets significantly lower than standard configurations. This form of spectrometer design offers the potential for exceptionally compact instrument for differential optical absorption spectroscopy (DOAS applications from LEO, GEO, HAP or ground-based platforms. The breadboard demonstrator has been shown to offer high throughput and a stable Gaussian line shape with a spectral range from 300 to 450 nm at 0.5 nm resolution, suitable for a number of typical DOAS applications.

Satellite monitoring of different vegetation types by differential optical absorption spectroscopy (DOAS in the red spectral range

Directory of Open Access Journals (Sweden)

T. Wagner

2007-01-01

Full Text Available A new method for the satellite remote sensing of different types of vegetation and ocean colour is presented. In contrast to existing algorithms relying on the strong change of the reflectivity in the red and near infrared spectral region, our method analyses weak narrow-band (few nm reflectance structures (i.e. "fingerprint" structures of vegetation in the red spectral range. It is based on differential optical absorption spectroscopy (DOAS, which is usually applied for the analysis of atmospheric trace gas absorptions. Since the spectra of atmospheric absorption and vegetation reflectance are simultaneously included in the analysis, the effects of atmospheric absorptions are automatically corrected (in contrast to other algorithms. The inclusion of the vegetation spectra also significantly improves the results of the trace gas retrieval. The global maps of the results illustrate the seasonal cycles of different vegetation types. In addition to the vegetation distribution on land, they also show patterns of biological activity in the oceans. Our results indicate that improved sets of vegetation spectra might lead to more accurate and more specific identification of vegetation type in the future.

Atmospheric Infrasound during a Large Wildfire

Science.gov (United States)

Vance, Alexis; Elbing, Brian

2017-11-01

Numerous natural and manmade sources generate infrasound, including tornado producing storms, human heart, hurricanes, and volcanoes. Infrasound is currently being studied as part of Collaboration Leading Operational UAS Development for Meteorology and Atmospheric Physics (CLOUD MAP), which is a multi-university collaboration focused on development and implementation of unmanned aircraft systems (UAS) and integration with sensors for atmospheric measurements. To support this effort a fixed infrasonic microphone located in Stillwater, Oklahoma has been monitoring atmospheric emissions since September of 2016. While severe storm systems is the primary focus of this work, the system also captures a wide range of infrasonic sources from distances in excess of 300 miles due to an acoustic ceiling and weak atmospheric absorption. The current presentation will focus on atmospheric infrasound observations during a large wildfire on the Kansas-Oklahoma border that occurred between March 6-22, 2017. This work was supported by NSF Grant 1539070.

NACSA Charter School Replication Guide: The Spectrum of Replication Options. Authorizing Matters. Replication Brief 1

Science.gov (United States)

O'Neill, Paul

2010-01-01

One of the most important and high-profile issues in public education reform today is the replication of successful public charter school programs. With more than 5,000 failing public schools in the United States, there is a tremendous need for strong alternatives for parents and students. Replicating successful charter school models is an…

Non-LTE H2+ as the source of missing opacity in the solar atmosphere

Science.gov (United States)

Swamy, K. S. K.; Stecher, T. P.

1974-01-01

The population of the various vibrational levels of the H2+ molecule has been calculated from the consideration of formation and destruction mechanisms. The resulting population is used in calculating the total absorption due to H2+ and is compared with the other known sources of opacity at several optical depths of the solar atmosphere. It is shown that the absorption due to H2+ can probably account for the missing ultraviolet opacity in the solar atmosphere.

Laser absorption spectroscopy - Method for monitoring complex trace gas mixtures

Science.gov (United States)

Green, B. D.; Steinfeld, J. I.

1976-01-01

A frequency stabilized CO2 laser was used for accurate determinations of the absorption coefficients of various gases in the wavelength region from 9 to 11 microns. The gases investigated were representative of the types of contaminants expected to build up in recycled atmospheres. These absorption coefficients were then used in determining the presence and amount of the gases in prepared mixtures. The effect of interferences on the minimum detectable concentration of the gases was measured. The accuracies of various methods of solution were also evaluated.

DNA Replication in Engineered Escherichia coli Genomes with Extra Replication Origins.

Science.gov (United States)

Milbredt, Sarah; Farmani, Neda; Sobetzko, Patrick; Waldminghaus, Torsten

2016-10-21

The standard outline of bacterial genomes is a single circular chromosome with a single replication origin. From the bioengineering perspective, it appears attractive to extend this basic setup. Bacteria with split chromosomes or multiple replication origins have been successfully constructed in the last few years. The characteristics of these engineered strains will largely depend on the respective DNA replication patterns. However, the DNA replication has not been investigated systematically in engineered bacteria with multiple origins or split replicons. Here we fill this gap by studying a set of strains consisting of (i) E. coli strains with an extra copy of the native replication origin (oriC), (ii) E. coli strains with an extra copy of the replication origin from the secondary chromosome of Vibrio cholerae (oriII), and (iii) a strain in which the E. coli chromosome is split into two linear replicons. A combination of flow cytometry, microarray-based comparative genomic hybridization (CGH), and modeling revealed silencing of extra oriC copies and differential timing of ectopic oriII copies compared to the native oriC. The results were used to derive construction rules for future multiorigin and multireplicon projects.

Singlet Oxygen-Mediated Oxidation during UVA Radiation Alters the Dynamic of Genomic DNA Replication.

Directory of Open Access Journals (Sweden)

Dany Graindorge

Full Text Available UVA radiation (320-400 nm is a major environmental agent that can exert its deleterious action on living organisms through absorption of the UVA photons by endogenous or exogenous photosensitizers. This leads to the production of reactive oxygen species (ROS, such as singlet oxygen (1O2 and hydrogen peroxide (H2O2, which in turn can modify reversibly or irreversibly biomolecules, such as lipids, proteins and nucleic acids. We have previously reported that UVA-induced ROS strongly inhibit DNA replication in a dose-dependent manner, but independently of the cell cycle checkpoints activation. Here, we report that the production of 1O2 by UVA radiation leads to a transient inhibition of replication fork velocity, a transient decrease in the dNTP pool, a quickly reversible GSH-dependent oxidation of the RRM1 subunit of ribonucleotide reductase and sustained inhibition of origin firing. The time of recovery post irradiation for each of these events can last from few minutes (reduction of oxidized RRM1 to several hours (replication fork velocity and origin firing. The quenching of 1O2 by sodium azide prevents the delay of DNA replication, the decrease in the dNTP pool and the oxidation of RRM1, while inhibition of Chk1 does not prevent the inhibition of origin firing. Although the molecular mechanism remains elusive, our data demonstrate that the dynamic of replication is altered by UVA photosensitization of vitamins via the production of singlet oxygen.

Singlet Oxygen-Mediated Oxidation during UVA Radiation Alters the Dynamic of Genomic DNA Replication

Science.gov (United States)

Graindorge, Dany; Martineau, Sylvain; Machon, Christelle; Arnoux, Philippe; Guitton, Jérôme; Francesconi, Stefania; Frochot, Céline; Sage, Evelyne; Girard, Pierre-Marie

2015-01-01

UVA radiation (320–400 nm) is a major environmental agent that can exert its deleterious action on living organisms through absorption of the UVA photons by endogenous or exogenous photosensitizers. This leads to the production of reactive oxygen species (ROS), such as singlet oxygen (1O2) and hydrogen peroxide (H2O2), which in turn can modify reversibly or irreversibly biomolecules, such as lipids, proteins and nucleic acids. We have previously reported that UVA-induced ROS strongly inhibit DNA replication in a dose-dependent manner, but independently of the cell cycle checkpoints activation. Here, we report that the production of 1O2 by UVA radiation leads to a transient inhibition of replication fork velocity, a transient decrease in the dNTP pool, a quickly reversible GSH-dependent oxidation of the RRM1 subunit of ribonucleotide reductase and sustained inhibition of origin firing. The time of recovery post irradiation for each of these events can last from few minutes (reduction of oxidized RRM1) to several hours (replication fork velocity and origin firing). The quenching of 1O2 by sodium azide prevents the delay of DNA replication, the decrease in the dNTP pool and the oxidation of RRM1, while inhibition of Chk1 does not prevent the inhibition of origin firing. Although the molecular mechanism remains elusive, our data demonstrate that the dynamic of replication is altered by UVA photosensitization of vitamins via the production of singlet oxygen. PMID:26485711

Ozone transmittance in a model atmosphere at Ikeja, Lagos state ...

African Journals Online (AJOL)

Variation of ozone transmittance with height in the atmosphere for radiation in the 9.6m absorption band was studied using Goody's model atmosphere, with cubic spline interpolation technique to improve the quality of the curve. The data comprising of pressure and temperature at different altitudes (0-22 km) for the month of ...

Absorption of atmospheric NO2 by plants and soils, (1)

International Nuclear Information System (INIS)

Matsumaru, Tsuneo; Shiratori, Koji; Yoneyama, Tadakatsu; Totsuka, Tsumugu.

1979-01-01

Tomato, sunflower and corn plants were grown in culture solution containing three different concentrations of 15 N-labelled KNO 3 (260 ppm N, 105 ppm N, and 26 ppm N) as a nitrogen nutrient, and fumigated with 0.3 ppm NO 2 for 2 weeks during their vegetative stages. The amount of NO 2 nitrogen absorbed into the plants was estimated by ''difference method'' and '' 15 N method.'' '' 15 N method'' was found to give more probable values than ''difference method.'' According to '' 15 N method,'' the nitrogen derived from NO 2 was about 16% (tomato), 22% (sunflower), and 14% (corn) of the increased amount of total nitrogen in the whole plants in the 105 ppm N plot, and these percentages increased in the 26 ppm N plot. Difference in nitrogen concentration of the culture solution resulted in big change in the dry-weight increase of the tomato and sunflower plants, but the absorption rate of NO 2 nitrogen based on the dry weight changed slightly. The absorption rate of NO 2 nitrogen was around 0.8 mg (gDW) -1 day -1 in tomato and sunflower plants, and 0.3 mg (gDW) -1 day -1 in corn plant. Leaves were found to be an active sink of NO 2 and the nitrogen of NO 2 seemed to be rapidly transformed into compounds of high molecules in the leaf cells. (author)

Hydroxyurea-Induced Replication Stress

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Kenza Lahkim Bennani-Belhaj

2010-01-01

Full Text Available Bloom's syndrome (BS displays one of the strongest known correlations between chromosomal instability and a high risk of cancer at an early age. BS cells combine a reduced average fork velocity with constitutive endogenous replication stress. However, the response of BS cells to replication stress induced by hydroxyurea (HU, which strongly slows the progression of replication forks, remains unclear due to publication of conflicting results. Using two different cellular models of BS, we showed that BLM deficiency is not associated with sensitivity to HU, in terms of clonogenic survival, DSB generation, and SCE induction. We suggest that surviving BLM-deficient cells are selected on the basis of their ability to deal with an endogenous replication stress induced by replication fork slowing, resulting in insensitivity to HU-induced replication stress.

Atmospheric weighting functions and surface partial derivatives for remote sensing of scattering planetary atmospheres in thermal spectral region: general adjoint approach

International Nuclear Information System (INIS)

Ustinov, Eugene A.

2005-01-01

An approach to formulation of inversion algorithms for remote sensing in the thermal spectral region in the case of a scattering planetary atmosphere, based on the adjoint equation of radiative transfer (Ustinov (JQSRT 68 (2001) 195; JQSRT 73 (2002) 29); referred to as Papers 1 and 2, respectively, in the main text), is applied to the general case of retrievals of atmospheric and surface parameters for the scattering atmosphere with nadir viewing geometry. Analytic expressions for corresponding weighting functions for atmospheric parameters and partial derivatives for surface parameters are derived. The case of pure atmospheric absorption with a scattering underlying surface is considered and convergence to results obtained for the non-scattering atmospheres (Ustinov (JQSRT 74 (2002) 683), referred to as Paper 3 in the main text) is demonstrated

Evaluation of atmospheric corrections on hyperspectral data with special reference to mineral mapping

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Nisha Rani

2017-07-01

Full Text Available Hyperspectral images have wide applications in the fields of geology, mineral exploration, agriculture, forestry and environmental studies etc. due to their narrow band width with numerous channels. However, these images commonly suffer from atmospheric effects, thereby limiting their use. In such a situation, atmospheric correction becomes a necessary pre-requisite for any further processing and accurate interpretation of spectra of different surface materials/objects. In the present study, two very advance atmospheric approaches i.e. QUAC and FLAASH have been applied on the hyperspectral remote sensing imagery. The spectra of vegetation, man-made structure and different minerals from the Gadag area of Karnataka, were extracted from the raw image and also from the QUAC and FLAASH corrected images. These spectra were compared among themselves and also with the existing USGS and JHU spectral library. FLAASH is rigorous atmospheric algorithm and requires various parameters to perform but it has capability to compensate the effects of atmospheric absorption. These absorption curves in any spectra play an important role in identification of the compositions. Therefore, the presence of unwanted absorption features can lead to wrong interpretation and identification of mineral composition. FLAASH also has an advantage of spectral polishing which provides smooth spectral curves which helps in accurate identification of composition of minerals. Therefore, this study recommends that FLAASH is better than QUAC for atmospheric correction and correct interpretation and identification of composition of any object or minerals.

Atmospheric effects of nuclar war aerosols in general circulation model simulations: Influence of smoke optical properties

International Nuclear Information System (INIS)

Thompson, S.L.; Ramaswamy, V.; Covey, C.

1987-01-01

A global atmospheric general circulation model (GCM) is modified to include radiative transfer parameterizations for the absorption and scattering of solar radiation and the absorption of thermal infrared (IR) radiation by smoke aerosols. The solar scattering modifications include a parameterization for diagnosing smoke optical properties as a function of the time- and space-dependent smoke particle radii. The aerosol IR modifications allow for both the ''grey'' absorber approximation and a broadband approximation that resolves the aerosol absorption in four spectral intervals. We examine the sensitivity of some GCM-simulated atmospheric and climatic effects to the optical properties and radiative transfer parameterizations used in studies of massive injections of smoke. Specifically, we test the model response to solar scattering versus nonscattering smoke, variations in prescribed smoke single scattering albedo and IR specific absorption, and interactive versus fixed smoke optical properties. Hypothetical nuclear war created smoke scenarios assume the July injection of 60 or 180 Tg of smoke over portions of the mid-latitude land areas of the northern hemisphere. Atmospheric transport and scavenging of the smoke are included. Nonscattering smoke cases produce roughly 40 Wm/sup -2/ more Earth-atmosphere solar irradiance absorption over the northern hemisphere, when compared to scattering smoke cases having equivalent specific absorption efficiencies. Varying the elemental carbon content of smoke over a plausible range produces a 4 0 --6 0 C change in average mid-latitude land surface temperature, and a variation of about 0.1 in zonally averaged planetary albedo in the northern hemisphere

A Decade of H α Transits for HD 189733 b: Stellar Activity versus Absorption in the Extended Atmosphere

Energy Technology Data Exchange (ETDEWEB)

Cauley, P. Wilson; Redfield, Seth [Wesleyan University, Astronomy Department, Van Vleck Observatory, 96 Foss Hill Drive, Middletown, CT 06459 (United States); Jensen, Adam G., E-mail: pcauley@wesleyan.edu [University of Nebraska-Kearney, Department of Physics and Astronomy, 24011 11th Avenue, Kearney, NE 68849 (United States)

2017-05-01

HD 189733 b is one of the most well studied exoplanets due to its large transit depth and host star brightness. The focus on this object has produced a number of high-cadence transit observations using high-resolution optical spectrographs. Here we present an analysis of seven full H α transits of HD 189733 b using HARPS on the 3.6 meter La Silla telescope and HIRES on Keck I, taken over the course of nine years from 2006 to 2015. H α transmission signals are analyzed as a function of the stellar activity level, as measured using the normalized core flux of the Ca ii H and K lines. We find strong variations in the strength of the H α transmission spectrum from epoch to epoch. However, there is no clear trend between the Ca ii core emission and the strength of the in-transit H α signal, although the transit showing the largest absorption value also occurs when the star is the most active. We present simulations of the in-transit contrast effect and find that the planet must consistently transit active latitudes with very strong facular and plage emission regions in order to reproduce the observed line strengths. We also investigate the measured velocity centroids with models of planetary rotation and show that the small line profile velocities could be due to large velocities in the upper atmosphere of the planet. Overall, we find it more likely that the measured H α signals arise in the extended planetary atmosphere, although a better understanding of active region emission for active stars such as HD 189733 is needed.

Distribution of temperature coefficient density for muons in the atmosphere

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Kuzmenko V.S.

2017-12-01

Full Text Available To date, several dozens of new muon detectors have been built. When studying cosmic-ray intensity variations with these detectors, located deep in the atmosphere, it is necessary to calculate all characteristics, including the distribution of temperature coefficient density for muons in the atmosphere, taking into account their specific geometry. For this purpose, we calculate the density of temperature coefficients of muon intensity in the atmosphere at various zenith angles of detection at sea level and at various depths underground for different absorption ranges of primary protons and pions in the atmosphere.

40 CFR 427.100 - Applicability; description of the vapor absorption subcategory.

Science.gov (United States)

2010-07-01

... 40 Protection of Environment 29 2010-07-01 2010-07-01 false Applicability; description of the vapor absorption subcategory. 427.100 Section 427.100 Protection of Environment ENVIRONMENTAL PROTECTION... materials from atmospheric emissions by means of wet scrubbers. ...

Replicating animal mitochondrial DNA

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Emily A. McKinney

2013-01-01

Full Text Available The field of mitochondrial DNA (mtDNA replication has been experiencing incredible progress in recent years, and yet little is certain about the mechanism(s used by animal cells to replicate this plasmid-like genome. The long-standing strand-displacement model of mammalian mtDNA replication (for which single-stranded DNA intermediates are a hallmark has been intensively challenged by a new set of data, which suggests that replication proceeds via coupled leading-and lagging-strand synthesis (resembling bacterial genome replication and/or via long stretches of RNA intermediates laid on the mtDNA lagging-strand (the so called RITOLS. The set of proteins required for mtDNA replication is small and includes the catalytic and accessory subunits of DNA polymerase y, the mtDNA helicase Twinkle, the mitochondrial single-stranded DNA-binding protein, and the mitochondrial RNA polymerase (which most likely functions as the mtDNA primase. Mutations in the genes coding for the first three proteins are associated with human diseases and premature aging, justifying the research interest in the genetic, biochemical and structural properties of the mtDNA replication machinery. Here we summarize these properties and discuss the current models of mtDNA replication in animal cells.

Thermal Band Atmospheric Correction Using Atmospheric Profiles Derived from Global Positioning System Radio Occultation and the Atmospheric Infrared Sounder

Science.gov (United States)

Pagnutti, Mary; Holekamp, Kara; Stewart, Randy; Vaughan, Ronald D.

2006-01-01

This Rapid Prototyping Capability study explores the potential to use atmospheric profiles derived from GPS (Global Positioning System) radio occultation measurements and by AIRS (Atmospheric Infrared Sounder) onboard the Aqua satellite to improve surface temperature retrieval from remotely sensed thermal imagery. This study demonstrates an example of a cross-cutting decision support technology whereby NASA data or models are shown to improve a wide number of observation systems or models. The ability to use one data source to improve others will be critical to the GEOSS (Global Earth Observation System of Systems) where a large number of potentially useful systems will require auxiliary datasets as input for decision support. Atmospheric correction of thermal imagery decouples TOA radiance and separates surface emission from atmospheric emission and absorption. Surface temperature can then be estimated from the surface emission with knowledge of its emissivity. Traditionally, radiosonde sounders or atmospheric models based on radiosonde sounders, such as the NOAA (National Oceanic & Atmospheric Administration) ARL (Air Resources Laboratory) READY (Real-time Environmental Application and Display sYstem), provide the atmospheric profiles required to perform atmospheric correction. Unfortunately, these types of data are too spatially sparse and too infrequently taken. The advent of high accuracy, global coverage, atmospheric data using GPS radio occultation and AIRS may provide a new avenue for filling data input gaps. In this study, AIRS and GPS radio occultation derived atmospheric profiles from the German Aerospace Center CHAMP (CHAllenging Minisatellite Payload), the Argentinean Commission on Space Activities SAC-C (Satellite de Aplicaciones Cientificas-C), and the pair of NASA GRACE (Gravity Recovery and Climate Experiment) satellites are used as input data in atmospheric radiative transport modeling based on the MODTRAN (MODerate resolution atmospheric

Terrestrial atmosphere, water and astrobiology

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Coradini M.

2010-12-01

Full Text Available Primitive life, defined as a chemical system capable to transfer its molecular information via self-replication and also capable to evolve, originated about 4 billion years ago from the processing of organic molecules by liquid water. Terrestrial atmosphere played a key role in the process by allowing the permanent presence of liquid water and by participating in the production of carbon-based molecules. Water molecules exhibit specific properties mainly due to a dense network of hydrogen bonds. The carbon-based molecules were either home made in the atmosphere and/or in submarine hydrothermal systems or delivered by meteorites and micrometeorites. The search for possible places beyond the earth where the trilogy atmosphere/water/life could exist is the main objective of astrobiology. Within the Solar System, exploration missions are dedicated to Mars, Europa, Titan and the icy bodies. The discovery of several hundreds of extrasolar planets opens the quest to the whole Milky Way.

Opo lidar sounding of trace atmospheric gases in the 3 - 4 μm spectral range

Science.gov (United States)

Romanovskii, Oleg A.; Sadovnikov, Sergey A.; Kharchenko, Olga V.; Yakovlev, Semen V.

2018-04-01

The applicability of a KTA crystal-based laser system with optical parametric oscillators (OPO) generation to lidar sounding of the atmosphere in the spectral range 3-4 μm is studied in this work. A technique developed for lidar sounding of trace atmospheric gases (TAG) is based on differential absorption lidar (DIAL) method and differential optical absorption spectroscopy (DOAS). The DIAL-DOAS technique is tested to estimate its efficiency for lidar sounding of atmospheric trace gases. The numerical simulation performed shows that a KTA-based OPO laser is a promising source of radiation for remote DIAL-DOAS sounding of the TAGs under study along surface tropospheric paths. A possibility of using a PD38-03-PR photodiode for the DIAL gas analysis of the atmosphere is shown.

Interpreting the Ultraviolet Aerosol Index Observed with the OMI Satellite Instrument to Understand Absorption by Organic Aerosols: Implications for Atmospheric Oxidation and Direct Radiative Effects

Science.gov (United States)

Hammer, Melanie S.; Martin, Randall V.; Donkelaar, Aaron van; Buchard, Virginie; Torres, Omar; Ridley, David A.; Spurr, Robert J. D.

2016-01-01

Satellite observations of the ultraviolet aerosol index (UVAI) are sensitive to absorption of solar radiation by aerosols; this absorption affects photolysis frequencies and radiative forcing. We develop a global simulation of the UVAI using the 3-D chemical transport model GEOSChem coupled with the Vector Linearized Discrete Ordinate Radiative Transfer model (VLIDORT). The simulation is applied to interpret UVAI observations from the Ozone Monitoring Instrument (OMI) for the year 2007. Simulated and observed values are highly consistent in regions where mineral dust dominates the UVAI, but a large negative bias (-0.32 to -0.97) exists between simulated and observed values in biomass burning regions. We determine effective optical properties for absorbing organic aerosol, known as brown carbon (BrC), and implement them into GEOS-Chem to better represent observed UVAI values over biomass burning regions. The inclusion of absorbing BrC decreases the mean bias between simulated and OMI UVAI values from -0.57 to -0.09 over West Africa in January, from -0.32 to +0.0002 over South Asia in April, from -0.97 to -0.22 over southern Africa in July, and from -0.50 to +0.33 over South America in September. The spectral dependence of absorption after including BrC in the model is broadly consistent with reported observations for biomass burning aerosol, with absorbing Angstrom exponent (AAE) values ranging from 2.9 in the ultraviolet (UV) to 1.3 across the UV-Near IR spectrum. We assess the effect of the additional UV absorption by BrC on atmospheric photochemistry by examining tropospheric hydroxyl radical (OH) concentrations in GEOS-Chem. The inclusion of BrC decreases OH by up to 30% over South America in September, up to 20% over southern Africa in July, and up to 15% over other biomass burning regions. Global annual mean OH concentrations in GEOS-Chem decrease due to the presence of absorbing BrC, increasing the methyl chloroform lifetime from 5.62 to 5.68 years, thus

Chromatin Controls DNA Replication Origin Selection, Lagging-Strand Synthesis, and Replication Fork Rates.

Science.gov (United States)

Kurat, Christoph F; Yeeles, Joseph T P; Patel, Harshil; Early, Anne; Diffley, John F X

2017-01-05

The integrity of eukaryotic genomes requires rapid and regulated chromatin replication. How this is accomplished is still poorly understood. Using purified yeast replication proteins and fully chromatinized templates, we have reconstituted this process in vitro. We show that chromatin enforces DNA replication origin specificity by preventing non-specific MCM helicase loading. Helicase activation occurs efficiently in the context of chromatin, but subsequent replisome progression requires the histone chaperone FACT (facilitates chromatin transcription). The FACT-associated Nhp6 protein, the nucleosome remodelers INO80 or ISW1A, and the lysine acetyltransferases Gcn5 and Esa1 each contribute separately to maximum DNA synthesis rates. Chromatin promotes the regular priming of lagging-strand DNA synthesis by facilitating DNA polymerase α function at replication forks. Finally, nucleosomes disrupted during replication are efficiently re-assembled into regular arrays on nascent DNA. Our work defines the minimum requirements for chromatin replication in vitro and shows how multiple chromatin factors might modulate replication fork rates in vivo. Copyright © 2017 The Authors. Published by Elsevier Inc. All rights reserved.

Modeling inhomogeneous DNA replication kinetics.

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Michel G Gauthier

Full Text Available In eukaryotic organisms, DNA replication is initiated at a series of chromosomal locations called origins, where replication forks are assembled proceeding bidirectionally to replicate the genome. The distribution and firing rate of these origins, in conjunction with the velocity at which forks progress, dictate the program of the replication process. Previous attempts at modeling DNA replication in eukaryotes have focused on cases where the firing rate and the velocity of replication forks are homogeneous, or uniform, across the genome. However, it is now known that there are large variations in origin activity along the genome and variations in fork velocities can also take place. Here, we generalize previous approaches to modeling replication, to allow for arbitrary spatial variation of initiation rates and fork velocities. We derive rate equations for left- and right-moving forks and for replication probability over time that can be solved numerically to obtain the mean-field replication program. This method accurately reproduces the results of DNA replication simulation. We also successfully adapted our approach to the inverse problem of fitting measurements of DNA replication performed on single DNA molecules. Since such measurements are performed on specified portion of the genome, the examined DNA molecules may be replicated by forks that originate either within the studied molecule or outside of it. This problem was solved by using an effective flux of incoming replication forks at the model boundaries to represent the origin activity outside the studied region. Using this approach, we show that reliable inferences can be made about the replication of specific portions of the genome even if the amount of data that can be obtained from single-molecule experiments is generally limited.

Mechanisms of DNA replication termination.

Science.gov (United States)

Dewar, James M; Walter, Johannes C

2017-08-01

Genome duplication is carried out by pairs of replication forks that assemble at origins of replication and then move in opposite directions. DNA replication ends when converging replication forks meet. During this process, which is known as replication termination, DNA synthesis is completed, the replication machinery is disassembled and daughter molecules are resolved. In this Review, we outline the steps that are likely to be common to replication termination in most organisms, namely, fork convergence, synthesis completion, replisome disassembly and decatenation. We briefly review the mechanism of termination in the bacterium Escherichia coli and in simian virus 40 (SV40) and also focus on recent advances in eukaryotic replication termination. In particular, we discuss the recently discovered E3 ubiquitin ligases that control replisome disassembly in yeast and higher eukaryotes, and how their activity is regulated to avoid genome instability.

Concentration of elements in atmospheric aerosol in Bratislava

International Nuclear Information System (INIS)

Meresova, J.; Florek, M.; Holy, K.; Sykora, I.; Frontasyeva, M.V.; Pavlov, S.S.

2006-01-01

The concentrations of 41 chemical elements (heavy metals, rare earths, and actinides) were determined in atmospheric aerosol using nuclear and related analytical techniques. The sampling location in Bratislava (Slovak Republic). The main goal of this study is the quantification of the atmospheric pollution and its trend. The elemental content in filters was measured using instrumental neutron activation analysis at IBR-2 reactor in JINR Dubna and by atomic absorption spectrometry in Bratislava. The obtained results confirm the decreasing trend of pollution by most of the heavy metals in Bratislava atmosphere, and they are compared with the contents of pollutants in atmosphere of other cities. We determined also the composition of clear filter materials. (Authors)

Atmospheric tides on Neptune

International Nuclear Information System (INIS)

Dement'ev, M.S.; Morozhenko, A.V.

1989-01-01

The dependence of the equivalent width of the methane absorption band at 619 nm in the Neptune's spectrum upon the Triton's orbital position is discovered. It is assumed that observed changes of the equivalent width of the band and colour index (J - K) (Belton et al., 1981; Brown et al., 1981; Cruikshank, 1978) are due to atmospheric tides (period 2 d .9375) and Neptune's rotation (period 10 h .14)

Titan's hydrodynamically escaping atmosphere

Science.gov (United States)

Strobel, Darrell F.

2008-02-01

The upper atmosphere of Titan is currently losing mass at a rate ˜(4-5)×10 amus, by hydrodynamic escape as a high density, slow outward expansion driven principally by solar UV heating by CH 4 absorption. The hydrodynamic mass loss is essentially CH 4 and H 2 escape. Their combined escape rates are restricted by power limitations from attaining their limiting rates (and limiting fluxes). Hence they must exhibit gravitational diffusive separation in the upper atmosphere with increasing mixing ratios to eventually become major constituents in the exosphere. A theoretical model with solar EUV heating by N 2 absorption balanced by HCN rotational line cooling in the upper thermosphere yields densities and temperatures consistent with the Huygens Atmospheric Science Investigation (HASI) data [Fulchignoni, M., and 42 colleagues, 2005. Nature 438, 785-791], with a peak temperature of ˜185-190 K between 3500-3550 km. This model implies hydrodynamic escape rates of ˜2×10 CHs and 5×10 Hs, or some other combination with a higher H 2 escape flux, much closer to its limiting value, at the expense of a slightly lower CH 4 escape rate. Nonthermal escape processes are not required to account for the loss rates of CH 4 and H 2, inferred by the Cassini Ion Neutral Mass Spectrometer (INMS) measurements [Yelle, R.V., Borggren, N., de la Haye, V., Kasprzak, W.T., Niemann, H.B., Müller-Wodarg, I., Waite Jr., J.H., 2006. Icarus 182, 567-576].

Rolling replication of UV-irradiated duplex DNA in the phi X174 replicative-form----single-strand replication system in vitro

International Nuclear Information System (INIS)

Shavitt, O.; Livneh, Z.

1989-01-01

Cloning of the phi X174 viral origin of replication into phage M13mp8 produced an M13-phi X174 chimera, the DNA of which directed efficient replicative-form----single-strand rolling replication in vitro. This replication assay was performed with purified phi X174-encoded gene A protein, Escherichia coli rep helicase, single-stranded DNA-binding protein, and DNA polymerase III holoenzyme. The nicking of replicative-form I (RFI) DNA by gene A protein was essentially unaffected by the presence of UV lesions in the DNA. However, unwinding of UV-irradiated DNA by the rep helicase was inhibited twofold as compared with unwinding of the unirradiated substrate. UV irradiation of the substrate DNA caused a strong inhibition in its ability to direct DNA synthesis. However, even DNA preparations that contained as many as 10 photodimers per molecule still supported the synthesis of progeny full-length single-stranded DNA. The appearance of full-length radiolabeled products implied at least two full rounds of replication, since the first round released the unlabeled plus viral strand of the duplex DNA. Pretreatment of the UV-irradiated DNA substrate with purified pyrimidine dimer endonuclease from Micrococcus luteus, which converted photodimer-containing supercoiled RFI DNA into relaxed, nicked RFII DNA and thus prevented its replication, reduced DNA synthesis by 70%. Analysis of radiolabeled replication products by agarose gel electrophoresis followed by autoradiography revealed that this decrease was due to a reduction in the synthesis of progeny full-length single-stranded DNA. This implies that 70 to 80% of the full-length DNA products produced in this system were synthesized on molecules that carried photodimers

HTO deposition through gas exchange between soil and atmosphere

International Nuclear Information System (INIS)

Feinhals, J.

1988-06-01

Theoretical considerations show that the ratio of HTO/H 2 O molecules, i.e. the specific activity, is not the same in atmospheric humidity and moisture absorption but differs by the so-called specific activity coefficient k. On this basis a computer model (ATHOS) was developed which allowed the calculation of both the surface contamination of the soil due to the gas exchange with a contaminated atmosphere and the depth-specific distribution of the soil acitvity. On the one hand the equations base on a modified Philip-de Vries theory, and on the other hand on a large number of soil column experiments which served the examination of the influence of parameters of microclimate and soil physics on the absorption and diffusion of tritiated water vapour under simulated conditions Above all the individual capability of each soil type to absorb moisture must be taken into consideration in connection with the HTO transfer. In this context theoretical and experimental examinations were carried out indicating a practice-related possibility to determine the soil-specific absorption capability. (orig./DG) [de

Mammalian RAD52 Functions in Break-Induced Replication Repair of Collapsed DNA Replication Forks

DEFF Research Database (Denmark)

Sotiriou, Sotirios K; Kamileri, Irene; Lugli, Natalia

2016-01-01

Human cancers are characterized by the presence of oncogene-induced DNA replication stress (DRS), making them dependent on repair pathways such as break-induced replication (BIR) for damaged DNA replication forks. To better understand BIR, we performed a targeted siRNA screen for genes whose...... RAD52 facilitates repair of collapsed DNA replication forks in cancer cells....

Two instruments based on differential optical absorption spectroscopy (DOAS) to measure accurate ammonia concentrations in the atmosphere

Science.gov (United States)

Volten, H.; Bergwerff, J. B.; Haaima, M.; Lolkema, D. E.; Berkhout, A. J. C.; van der Hoff, G. R.; Potma, C. J. M.; Wichink Kruit, R. J.; van Pul, W. A. J.; Swart, D. P. J.

2012-02-01

We present two Differential Optical Absorption Spectroscopy (DOAS) instruments built at RIVM: the RIVM DOAS and the miniDOAS. Both instruments provide virtually interference-free measurements of NH3 concentrations in the atmosphere, since they measure over an open path, without suffering from inlet problems or interference problems by ammonium aerosols dissociating on tubes or filters. They measure concentrations up to at least 200 μg m-3, have a fast response, low maintenance demands, and a high up-time. The RIVM DOAS has a high accuracy of typically 0.15 μg m-3 for ammonia for 5-min averages and over a total light path of 100 m. The miniDOAS has been developed for application in measurement networks such as the Dutch National Air Quality Monitoring Network (LML). Compared to the RIVM DOAS it has a similar accuracy, but is significantly reduced in size, costs, and handling complexity. The RIVM DOAS and miniDOAS results showed excellent agreement (R2 = 0.996) during a field measurement campaign in Vredepeel, the Netherlands. This measurement site is located in an agricultural area and is characterized by highly variable, but on average high ammonia concentrations in the air. The RIVM-DOAS and miniDOAS results were compared to the results of the AMOR instrument, a continuous-flow wet denuder system, which is currently used in the LML. Averaged over longer time spans of typically a day, the (mini)DOAS and AMOR results agree reasonably well, although an offset of the AMOR values compared to the (mini)DOAS results exists. On short time scales, the (mini)DOAS shows a faster response and does not show the memory effects due to inlet tubing and transport of absorption fluids encountered by the AMOR. Due to its high accuracy, high uptime, low maintenance and its open path, the (mini)DOAS shows a good potential for flux measurements by using two (or more) systems in a gradient set-up and applying the aerodynamic gradient technique.

DETECTING AND CONSTRAINING N2 ABUNDANCES IN PLANETARY ATMOSPHERES USING COLLISIONAL PAIRS

International Nuclear Information System (INIS)

Schwieterman, Edward W.; Meadows, Victoria S.; Misra, Amit; Robinson, Tyler D.; Domagal-Goldman, Shawn

2015-01-01

Characterizing the bulk atmosphere of a terrestrial planet is important for determining surface pressure and potential habitability. Molecular nitrogen (N 2 ) constitutes the largest fraction of Earth's atmosphere and is likely to be a major constituent of many terrestrial exoplanet atmospheres. Due to its lack of significant absorption features, N 2 is extremely difficult to remotely detect. However, N 2 produces an N 2 –N 2 collisional pair, (N 2 ) 2 , which is spectrally active. Here we report the detection of (N 2 ) 2 in Earth's disk-integrated spectrum. By comparing spectra from NASA's EPOXI mission to synthetic spectra from the NASA Astrobiology Institute's Virtual Planetary Laboratory three-dimensional spectral Earth model, we find that (N 2 ) 2 absorption produces a ∼35% decrease in flux at 4.15 μm. Quantifying N 2 could provide a means of determining bulk atmospheric composition for terrestrial exoplanets and could rule out abiotic O 2 generation, which is possible in rarefied atmospheres. To explore the potential effects of (N 2 ) 2 in exoplanet spectra, we used radiative transfer models to generate synthetic emission and transit transmission spectra of self-consistent N 2 –CO 2 –H 2 O atmospheres, and analytic N 2 –H 2 and N 2 –H 2 –CO 2 atmospheres. We show that (N 2 ) 2 absorption in the wings of the 4.3 μm CO 2 band is strongly dependent on N 2 partial pressures above 0.5 bar and can significantly widen this band in thick N 2 atmospheres. The (N 2 ) 2 transit transmission signal is up to 10 ppm for an Earth-size planet with an N 2 -dominated atmosphere orbiting within the habitable zone of an M5V star and could be substantially larger for planets with significant H 2 mixing ratios

Spectral studies of ocean water with space-borne sensor SCIAMACHY using Differential Optical Absorption Spectroscopy (DOAS

Directory of Open Access Journals (Sweden)

M. Vountas

2007-09-01

Full Text Available Methods enabling the retrieval of oceanic parameter from the space borne instrumentation Scanning Imaging Absorption Spectrometer for Atmospheric ChartographY (SCIAMACHY using Differential Optical Absorption Spectroscopy (DOAS are presented. SCIAMACHY onboard ENVISAT measures back scattered solar radiation at a spectral resolution (0.2 to 1.5 nm. The DOAS method was used for the first time to fit modelled Vibrational Raman Scattering (VRS in liquid water and in situ measured phytoplankton absorption reference spectra to optical depths measured by SCIAMACHY. Spectral structures of VRS and phytoplankton absorption were clearly found in these optical depths. Both fitting approaches lead to consistent results. DOAS fits correlate with estimates of chlorophyll concentrations: low fit factors for VRS retrievals correspond to large chlorophyll concentrations and vice versa; large fit factors for phytoplankton absorption correspond with high chlorophyll concentrations and vice versa. From these results a simple retrieval technique taking advantage of both measurements is shown. First maps of global chlorophyll concentrations were compared to the corresponding MODIS measurements with very promising results. In addition, results from this study will be used to improve atmospheric trace gas DOAS-retrievals from visible wavelengths by including these oceanographic signatures.

REPLICATION TOOL AND METHOD OF PROVIDING A REPLICATION TOOL

DEFF Research Database (Denmark)

2016-01-01

The invention relates to a replication tool (1, 1a, 1b) for producing a part (4) with a microscale textured replica surface (5a, 5b, 5c, 5d). The replication tool (1, 1a, 1b) comprises a tool surface (2a, 2b) defining a general shape of the item. The tool surface (2a, 2b) comprises a microscale...... energy directors on flange portions thereof uses the replication tool (1, 1a, 1b) to form an item (4) with a general shape as defined by the tool surface (2a, 2b). The formed item (4) comprises a microscale textured replica surface (5a, 5b, 5c, 5d) with a lateral arrangement of polydisperse microscale...

Production mechanism of atomic nitrogen in atmospheric pressure pulsed corona discharge measured using two-photon absorption laser-induced fluorescence

International Nuclear Information System (INIS)

Teramoto, Yoshiyuki; Ono, Ryo; Oda, Tetsuji

2012-01-01

To study the production mechanism of atomic nitrogen, the temporal profile and spatial distribution of atomic nitrogen are measured in atmospheric pressure pulsed positive corona discharge using two-photon absorption laser-induced fluorescence. The absolute atomic nitrogen density in the streamer filaments is estimated from decay rate of atomic nitrogen in N 2 discharge. The results indicate that the absolute atomic nitrogen density is approximately constant against discharge energy. When the discharge voltage is 21.5 kV, production yield of atomic nitrogen produced by an N 2 discharge pulse is estimated to be 2.9 - 9.8 × 10 13 atoms and the energy efficiency of atomic nitrogen production is estimated to be about 1.8 - 6.1 × 10 16 atoms/J. The energy efficiency of atomic nitrogen production in N 2 discharge is constant against the discharge energy, while that in N 2 /O 2 discharge increases with discharge energy. In the N 2 /O 2 discharge, two-step process of N 2 dissociation plays significant role for atomic nitrogen production.

Recommendations for Replication Research in Special Education: A Framework of Systematic, Conceptual Replications

Science.gov (United States)

Coyne, Michael D.; Cook, Bryan G.; Therrien, William J.

2016-01-01

Special education researchers conduct studies that can be considered replications. However, they do not often refer to them as replication studies. The purpose of this article is to consider the potential benefits of conceptualizing special education intervention research within a framework of systematic, conceptual replication. Specifically, we…

A Group Increment Scheme for Infrared Absorption Intensities of Greenhouse Gases

Science.gov (United States)

Kokkila, Sara I.; Bera, Partha P.; Francisco, Joseph S.; Lee, Timothy J.

2012-01-01

A molecule's absorption in the atmospheric infrared (IR) window (IRW) is an indicator of its efficiency as a greenhouse gas. A model for estimating the absorption of a fluorinated molecule within the IRW was developed to assess its radiative impact. This model will be useful in comparing different hydrofluorocarbons and hydrofluoroethers contribution to global warming. The absorption of radiation by greenhouse gases, in particular hydrofluoroethers and hydrofluorocarbons, was investigated using ab initio quantum mechanical methods. Least squares regression techniques were used to create a model based on this data. The placement and number of fluorines in the molecule were found to affect the absorption in the IR window and were incorporated into the model. Several group increment models are discussed. An additive model based on one-carbon groups is found to work satisfactorily in predicting the ab initio calculated vibrational intensities.

DNA replication and cancer

DEFF Research Database (Denmark)

Boyer, Anne-Sophie; Walter, David; Sørensen, Claus Storgaard

2016-01-01

A dividing cell has to duplicate its DNA precisely once during the cell cycle to preserve genome integrity avoiding the accumulation of genetic aberrations that promote diseases such as cancer. A large number of endogenous impacts can challenge DNA replication and cells harbor a battery of pathways...... causing DNA replication stress and genome instability. Further, we describe cellular and systemic responses to these insults with a focus on DNA replication restart pathways. Finally, we discuss the therapeutic potential of exploiting intrinsic replicative stress in cancer cells for targeted therapy....

Late-replicating X-chromosome: replication patterns in mammalian females

Directory of Open Access Journals (Sweden)

Tunin Karen

2002-01-01

Full Text Available The GTG-banding and 5-BrdU incorporation patterns of the late-replicating X-chromosome were studied in female dogs and cattle, and compared to human female patterns. The replication patterns of the short arm of the X-chromosomes did not show any difference between human, dog and cattle females. As to the long arm, some bands showed differences among the three studied species regarding the replication kinetics pattern. These differences were observed in a restricted region of the X-chromosome, delimited by Xq11 -> q25 in humans, by Xq1 -> q8 in dogs, and by Xq12 -> q32 in cattle. In an attempt to find out if these differences in the replication kinetics could be a reflection of differences in the localization of genes in that region of the X-chromosome, we used the probe for the human androgen receptor gene (AR localized at Xq12, which is in the region where we observed differences among the three studied species. We did not, however, observe hybridization signals. Our study goes on, using other human probes for genes located in the region Xq11 -> Xq25.

A Replication by Any Other Name: A Systematic Review of Replicative Intervention Studies

Science.gov (United States)

Cook, Bryan G.; Collins, Lauren W.; Cook, Sara C.; Cook, Lysandra

2016-01-01

Replication research is essential to scientific knowledge. Reviews of replication studies often electronically search for "replicat*" as a textword, which does not identify studies that replicate previous research but do not self-identify as such. We examined whether the 83 intervention studies published in six non-categorical research…

Registered Replication Report

DEFF Research Database (Denmark)

Bouwmeester, S.; Verkoeijen, P. P.J.L.; Aczel, B.

2017-01-01

and colleagues. The results of studies using time pressure have been mixed, with some replication attempts observing similar patterns (e.g., Rand et al., 2014) and others observing null effects (e.g., Tinghög et al., 2013; Verkoeijen & Bouwmeester, 2014). This Registered Replication Report (RRR) assessed...... the size and variability of the effect of time pressure on cooperative decisions by combining 21 separate, preregistered replications of the critical conditions from Study 7 of the original article (Rand et al., 2012). The primary planned analysis used data from all participants who were randomly assigned...

Strong water absorption in the dayside emission spectrum of the planet HD 189733b.

Science.gov (United States)

Grillmair, Carl J; Burrows, Adam; Charbonneau, David; Armus, Lee; Stauffer, John; Meadows, Victoria; van Cleve, Jeffrey; von Braun, Kaspar; Levine, Deborah

2008-12-11

Recent observations of the extrasolar planet HD 189733b did not reveal the presence of water in the emission spectrum of the planet. Yet models of such 'hot-Jupiter' planets predict an abundance of atmospheric water vapour. Validating and constraining these models is crucial to understanding the physics and chemistry of planetary atmospheres in extreme environments. Indications of the presence of water in the atmosphere of HD 189733b have recently been found in transmission spectra, where the planet's atmosphere selectively absorbs the light of the parent star, and in broadband photometry. Here we report the detection of strong water absorption in a high-signal-to-noise, mid-infrared emission spectrum of the planet itself. We find both a strong downturn in the flux ratio below 10 microm and discrete spectral features that are characteristic of strong absorption by water vapour. The differences between these and previous observations are significant and admit the possibility that predicted planetary-scale dynamical weather structures may alter the emission spectrum over time. Models that match the observed spectrum and the broadband photometry suggest that heat redistribution from the dayside to the nightside is weak. Reconciling this with the high nightside temperature will require a better understanding of atmospheric circulation or possible additional energy sources.

International Expansion through Flexible Replication

DEFF Research Database (Denmark)

Jonsson, Anna; Foss, Nicolai Juul

2011-01-01

Business organizations may expand internationally by replicating a part of their value chain, such as a sales and marketing format, in other countries. However, little is known regarding how such “international replicators” build a format for replication, or how they can adjust it in order to ada......, etc.) are replicated in a uniform manner across stores, and change only very slowly (if at all) in response to learning (“flexible replication”). We conclude by discussing the factors that influence the approach to replication adopted by an international replicator.......Business organizations may expand internationally by replicating a part of their value chain, such as a sales and marketing format, in other countries. However, little is known regarding how such “international replicators” build a format for replication, or how they can adjust it in order to adapt...

Quantification of atmospheric formaldehyde by infrared absorption spectroscopy

Science.gov (United States)

Hoffnagle, John; Fleck, Derek; Rella, Chris; Kim-Hak, David

2017-04-01

Formaldehyde is a toxic, carcinogenic compound that can contaminate ambient air as a result of combustion or outgassing of commercial products such as adhesives used to fabricate plywood and to affix indoor carpeting. Like many small molecules, formaldehyde has an infrared absorption spectrum exhibiting bands of ro-vibrational transitions that are well resolved at low pressure and therefore well suited for optical analysis of formaldehyde concentration. We describe progress in applying cavity ring-down spectroscopy of the 2v5 band (the first overtone of the asymmetric C-H stretch, origin at 1770 nm) to the quantitative analysis of formaldehyde concentration in ambient air. Preliminary results suggest that a sensitivity of 1-2 ppb in a measurement interval of a few seconds, and 0.1-0.2 ppb in a few minutes, should be achievable with a compact, robust, and field-deployable instrument. Finally, we note that recent satellites monitoring snapshots of formaldehyde columns give insights into global formaldehyde production, migration and lifetime. The ability to monitor formaldehyde with a small and portable analyzer has the potential to aid in validation of these snapshots and to provide complementary data to show vertical dispersions with high spatial accuracy.

Sterol Binding by the Tombusviral Replication Proteins Is Essential for Replication in Yeast and Plants.

Science.gov (United States)

Xu, Kai; Nagy, Peter D

2017-04-01

Membranous structures derived from various organelles are important for replication of plus-stranded RNA viruses. Although the important roles of co-opted host proteins in RNA virus replication have been appreciated for a decade, the equally important functions of cellular lipids in virus replication have been gaining full attention only recently. Previous work with Tomato bushy stunt tombusvirus (TBSV) in model host yeast has revealed essential roles for phosphatidylethanolamine and sterols in viral replication. To further our understanding of the role of sterols in tombusvirus replication, in this work we showed that the TBSV p33 and p92 replication proteins could bind to sterols in vitro The sterol binding by p33 is supported by cholesterol recognition/interaction amino acid consensus (CRAC) and CARC-like sequences within the two transmembrane domains of p33. Mutagenesis of the critical Y amino acids within the CRAC and CARC sequences blocked TBSV replication in yeast and plant cells. We also showed the enrichment of sterols in the detergent-resistant membrane (DRM) fractions obtained from yeast and plant cells replicating TBSV. The DRMs could support viral RNA synthesis on both the endogenous and exogenous templates. A lipidomic approach showed the lack of enhancement of sterol levels in yeast and plant cells replicating TBSV. The data support the notion that the TBSV replication proteins are associated with sterol-rich detergent-resistant membranes in yeast and plant cells. Together, the results obtained in this study and the previously published results support the local enrichment of sterols around the viral replication proteins that is critical for TBSV replication. IMPORTANCE One intriguing aspect of viral infections is their dependence on efficient subcellular assembly platforms serving replication, virion assembly, or virus egress via budding out of infected cells. These assembly platforms might involve sterol-rich membrane microdomains, which are

Modeling of spectral atmosphere transmission for infrared radiation

International Nuclear Information System (INIS)

Wiecek, B.; Olbrycht, R.

2009-01-01

IR radiation transmission of the atmosphere is an important factor during the thermovision remote sensing and measurement. Transmission coefficient of the atmosphere depends on its content and it is attenuated mainly due to the vapor concentration. Every calibrated thermal camera should be equipped with the digital system which implements the transmission model of the atmosphere. The model presented in this work is based on Beer and Bouguer laws. The proposed simplified model of transmission atmosphere is suitable for implementation in the thermal cameras. A simple digital controller of the camera can calculate the transmission coefficient and correct the temperature measurement. The model takes in account both scattering and absorption due the quantum effects when the photons are interacting with the molecules. (author)

Monitoring of contamination of atmospheric environment by radiation

International Nuclear Information System (INIS)

Ise, Hiroaki

1995-01-01

Atmospheric pollution has become a worldwide problem regardless of developed industrial nations and developing countries. In particular, the pollution due to automobile exhaust gas, the carcinogenic particles in diesel exhaust and their relation to various respiratory diseases are the problems. Nitrogen oxides and sulfur oxides in exhaust gas become the cause of acid rain. Radiation began to be utilized for the measurement of the concentration of floating particles and the amount of fallout dust, the forecast of the generation and diffusion of pollutants, the elucidation of the contribution of generation sources in wide areas and so on. In this report, the circumstances that radiation became to be utilized for monitoring atmospheric environment and the present status and the perspective of the radiation utilization in the field of the preservation of atmospheric environment are described. The progress of the method of measuring floating particles in Japan is explained. The automatic measurement of floating particles by β-ray absorption method and the application of β-ray absorption method to the measurement of the amount of fallout dust, generation source particles and the exposure to floating particles of individuals for health control are described. The utilization of radiation for real time monitoring, the investigation of the generation of blown-up dust, atmospheric diffusion experiment and the elucidation of the contribution of generation sources by PIXE radioactivation analysis are reported. (K.I.)

Atmospheric correction for JPSS-2 VIIRS response versus scan angle measurements

Science.gov (United States)

McIntire, Jeffrey; Moeller, Chris; Oudrari, Hassan; Xiong, Xiaoxiong

2017-09-01

The Joint Polar Satellite System 2 (JPSS-2) Visible Infrared Imaging Radiometer Suite (VIIRS) includes one spectral band centered in a strong atmospheric absorption region. As much of the pre-launch calibration is performed under laboratory ambient conditions, accurately accounting for the absorption, and thereby ensuring the transfer of the sensor calibration to on-orbit operations, is necessary to generate science quality data products. This work is focused on the response versus scan angle (RVS) measurements, which characterize the relative scan angle dependent reflectance of the JPSS-2 VIIRS instrument optics. The spectral band of interest, centered around 1378 nm, is within a spectral region strongly effected by water vapor absorption. The methodology used to model the absolute humidity and the atmospheric transmittance under the laboratory conditions is detailed. The application of this transmittance to the RVS determination is then described including an uncertainty estimate; a comparison to the pre-launch measurements from earlier sensor builds is also performed.

Mcm10 regulates DNA replication elongation by stimulating the CMG replicative helicase.

Science.gov (United States)

Lõoke, Marko; Maloney, Michael F; Bell, Stephen P

2017-02-01

Activation of the Mcm2-7 replicative DNA helicase is the committed step in eukaryotic DNA replication initiation. Although Mcm2-7 activation requires binding of the helicase-activating proteins Cdc45 and GINS (forming the CMG complex), an additional protein, Mcm10, drives initial origin DNA unwinding by an unknown mechanism. We show that Mcm10 binds a conserved motif located between the oligonucleotide/oligosaccharide fold (OB-fold) and A subdomain of Mcm2. Although buried in the interface between these domains in Mcm2-7 structures, mutations predicted to separate the domains and expose this motif restore growth to conditional-lethal MCM10 mutant cells. We found that, in addition to stimulating initial DNA unwinding, Mcm10 stabilizes Cdc45 and GINS association with Mcm2-7 and stimulates replication elongation in vivo and in vitro. Furthermore, we identified a lethal allele of MCM10 that stimulates initial DNA unwinding but is defective in replication elongation and CMG binding. Our findings expand the roles of Mcm10 during DNA replication and suggest a new model for Mcm10 function as an activator of the CMG complex throughout DNA replication. © 2017 Lõoke et al.; Published by Cold Spring Harbor Laboratory Press.

Airborne Measurements of CO2 Column Absorption and Range Using a Pulsed Direct-Detection Integrated Path Differential Absorption Lidar

Science.gov (United States)

Abshire, James B.; Riris, Haris; Weaver, Clark J.; Mao, Jianping; Allan, Graham R.; Hasselbrack, William E.; Browell, Edward V.

2013-01-01

We report on airborne CO2 column absorption measurements made in 2009 with a pulsed direct-detection lidar operating at 1572.33 nm and utilizing the integrated path differential absorption technique. We demonstrated these at different altitudes from an aircraft in July and August in flights over four locations in the central and eastern United States. The results show clear CO2 line shape and absorption signals, which follow the expected changes with aircraft altitude from 3 to 13 km. The lidar measurement statistics were also calculated for each flight as a function of altitude. The optical depth varied nearly linearly with altitude, consistent with calculations based on atmospheric models. The scatter in the optical depth measurements varied with aircraft altitude as expected, and the median measurement precisions for the column varied from 0.9 to 1.2 ppm. The altitude range with the lowest scatter was 810 km, and the majority of measurements for the column within it had precisions between 0.2 and 0.9 ppm.

A double cell for X-ray absorption spectrometry of atomic Zn

CERN Document Server

Mihelic, A; Arcon, I; Padeznik-Gomilsek, J; Borowski, M

2002-01-01

A high-temperature cell with a double wall design has been constructed for X-ray absorption spectrometry of metal vapors. The inner cell, assembled from a corundum tube and thin plates without welding or reshaping, serves as a container of the vapor sample. It is not vacuum tight: instead, the outer tube provides inert atmosphere. Several spectra of K-edge atomic absorption of Zn were obtained in the stationary working regime below the Zn boiling point. The K-edge profile shows an extremely strong resonance and, above the continuum threshold, coexcitations of the outer electrons.

Chemical kinetic studies of atmospheric reactions using tunable diode laser spectroscopy

Science.gov (United States)

Worsnop, Douglas R.; Nelson, David D.; Zahniser, Mark S.

1993-01-01

IR absorption using tunable diode laser spectroscopy provides a sensitive and quantitative detection method for laboratory kinetic studies of atmospheric trace gases. Improvements in multipass cell design, real time signal processing, and computer controlled data acquisition and analysis have extended the applicability of the technique. We have developed several optical systems using off-axis resonator mirror designs which maximize path length while minimizing both the sample volume and the interference fringes inherent in conventional 'White' cells. Computerized signal processing using rapid scan (300 kHz), sweep integration with 100 percent duty cycle allows substantial noise reduction while retaining the advantages of using direct absorption for absolute absorbance measurements and simultaneous detection of multiple species. Peak heights and areas are determined by curve fitting using nonlinear least square methods. We have applied these techniques to measurements of: (1) heterogeneous uptake chemistry of atmospheric trace gases (HCl, H2O2, and N2O5) on aqueous and sulfuric acid droplets; (2) vapor pressure measurements of nitric acid and water over prototypical stratospheric aerosol (nitric acid trihydrate) surfaces; and (3) discharge flow tube kinetic studies of the HO2 radical using isotopic labeling for product channel and mechanistic analysis. Results from each of these areas demonstrate the versatility of TDL absorption spectroscopy for atmospheric chemistry applications.

Link between local scale BC emissions in the Indo-Gangetic Plains and large scale atmospheric solar absorption

Directory of Open Access Journals (Sweden)

P. S. Praveen

2012-01-01

Full Text Available Project Surya has documented indoor and outdoor concentrations of black carbon (BC from traditional biomass burning cook stoves in a rural village located in the Indo-Gangetic Plains (IGP region of N. India from November 2009–September 2010. In this paper, we systematically document the link between local scale aerosol properties and column averaged regional aerosol optical properties and atmospheric radiative forcing. We document observations from the first phase of Project Surya and estimate the source dependent (biomass and fossil fuels aerosol optical properties from local to regional scale. Data were collected using surface based observations of BC, organic carbon (OC, aerosol light absorption, scattering coefficient at the Surya village (SVI_1 located in IGP region and integrated with satellite and AERONET observations at the regional scale (IGP. The daily mean BC concentrations at SVI_1 showed a large increase of BC during the dry season (December to February with values reaching 35 μg m⁻³. Space based LIDAR data revealed how the biomass smoke was trapped within the first kilometer during the dry season and extended to above 5 km during the pre-monsoon season. As a result, during the dry season, the variance in the daily mean single scattering albedo (SSA, the ratio of scattering to extinction coefficient, and column aerosol optical properties at the local IGP site correlated (with slopes in the range of 0.85 to 1.06 and R²>0.4 well with the "IGP_AERONET" (mean of six AERONET sites. The statistically significant correlation suggested that in-situ observations can be used to derive spatial mean forcing, at least for the dry season. The atmospheric forcing due to BC and OC exceeded 20 Wm⁻² during all months from November to May, supporting the deduction that elimination of cook stove smoke emissions through clean cooking technologies will likely have a major positive impact not only on human

Atmospheric aerosol brown carbon in the high Himalayas

Science.gov (United States)

Kirillova, Elena; Decesari, Stefano; Marinoni, Angela; Bonasoni, Paolo; Vuillermoz, Elisa; Facchini, M. Cristina; Fuzzi, Sandro

2016-04-01

Anthropogenic light-absorbing atmospheric aerosol can reach very high concentrations in the planetary boundary layer in South-East Asia ("brown clouds"), affecting atmospheric transparency and generating spatial gradients of temperature over land with a possible impact on atmospheric dynamics and monsoon circulation. Besides black carbon (BC), an important light-absorbing component of anthropogenic aerosols is the organic carbon component known as 'brown carbon' (BrC). In this research, we provided first measurements of atmospheric aerosol BrC in the high Himalayas during different seasons. Aerosol sampling was conducted at the GAW-WMO Global station "Nepal Climate Observatory-Pyramid" (NCO-P) located in the high Khumbu valley at 5079 m a.s.l. in the foothills of Mt. Everest. PM10 aerosol samples were collected from July 2013 to November 2014. The sampling strategy was set up in order to discriminate the daytime valley breeze bringing polluted air masses up to the observatory and free tropospheric air during nighttime. Water-soluble BrC (WS-BrC) and methanol-soluble BrC (MeS-BrC) were extracted and analyzed using a UV/VIS spectrophotometer equipped with a 50 cm liquid waveguide capillary cell. In the polluted air masses, the highest levels of the BrC light absorption coefficient at 365 nm (babs365) were observed during the pre-monsoon season (1.83±1.46 Mm-1 for WS-BrC and 2.86±2.49 Mm-1 for MeS-BrC) and the lowest during the monsoon season (0.21±0.22 Mm-1 for WS-BrC and 0.32±0.29 Mm-1 for MeS-BrC). The pre-monsoon season is the most frequently influenced by a strong atmospheric brown cloud (ABC) transport to NCO-P due to increased convection and mixing layer height over South Asia combined with the highest up-valley wind speed and the increase of the emissions from open fires due to the agricultural practice along the Himalayas foothills and the Indo-Gangetic Plain. In contrast, the monsoon season is characterized by a weakened valley wind regime and an

Atmospheric Airborne Pressure Measurements Using the Oxygen A Band for the ASCENDS Mission

Science.gov (United States)

Riris, Haris; Rodriguez, Mike; Stephen, Mark; Hasselbrack, William; Allan, Graham; Mao, Jiamping,; Kawa, Stephan R.; Weaver, Clark J.

2011-01-01

We report on airborne atmospheric pressure measurements using new fiber-based laser technology and the oxygen A-band at 765 nm. Remote measurements of atmospheric temperature and pressure are required for a number of NASA Earth science missions and specifically for the Active Sensing of CO2 Emissions Over Nights, Days, and Seasons (ASCENDS) mission. Accurate measurements of tropospheric CO2 on a global scale are very important in order to better understand its sources and sinks and to improve predictions on any future climate change. The ultimate goal of a CO2 remote sensing mission, such as ASCENDS, is to derive the CO2 concentration in the atmosphere in terms of mole fraction in unit of parts-per-million (ppmv) with regard to dry air. Therefore, both CO2 and the dry air number of molecules in the atmosphere are needed in deriving this quantity. O2 is a stable molecule and uniformly mixed in the atmosphere. Measuring the O2 absorption in the atmosphere can thus be used to infer the dry air number of molecules and then used to calculate CO2 concentration. With the knowledge of atmospheric water vapor, we can then estimate the total surface pressure needed for CO2 retrievals. Our work, funded by the ESTO IIP program, uses fiber optic technology and non-linear optics to generate 765 nm laser radiation coincident with the Oxygen A-band. Our pulsed, time gated technique uses several on- and off-line wavelengths tuned to the O2 absorption line. The choice of wavelengths allows us to measure the pressure by using two adjacent O2 absorptions in the Oxygen A-band. Our retrieval algorithm fits the O2 lineshapes and derives the pressure. Our measurements compare favorably with a local weather monitor mounted outside our laboratory and a local weather station.

Interpreting the ultraviolet aerosol index observed with the OMI satellite instrument to understand absorption by organic aerosols: implications for atmospheric oxidation and direct radiative effects

Directory of Open Access Journals (Sweden)

M. S. Hammer

2016-03-01

Full Text Available Satellite observations of the ultraviolet aerosol index (UVAI are sensitive to absorption of solar radiation by aerosols; this absorption affects photolysis frequencies and radiative forcing. We develop a global simulation of the UVAI using the 3-D chemical transport model GEOS-Chem coupled with the Vector Linearized Discrete Ordinate Radiative Transfer model (VLIDORT. The simulation is applied to interpret UVAI observations from the Ozone Monitoring Instrument (OMI for the year 2007. Simulated and observed values are highly consistent in regions where mineral dust dominates the UVAI, but a large negative bias (−0.32 to −0.97 exists between simulated and observed values in biomass burning regions. We determine effective optical properties for absorbing organic aerosol, known as brown carbon (BrC, and implement them into GEOS-Chem to better represent observed UVAI values over biomass burning regions. The inclusion of absorbing BrC decreases the mean bias between simulated and OMI UVAI values from −0.57 to −0.09 over West Africa in January, from −0.32 to +0.0002 over South Asia in April, from −0.97 to −0.22 over southern Africa in July, and from −0.50 to +0.33 over South America in September. The spectral dependence of absorption after including BrC in the model is broadly consistent with reported observations for biomass burning aerosol, with absorbing Ångström exponent (AAE values ranging from 2.9 in the ultraviolet (UV to 1.3 across the UV–Near IR spectrum. We assess the effect of the additional UV absorption by BrC on atmospheric photochemistry by examining tropospheric hydroxyl radical (OH concentrations in GEOS-Chem. The inclusion of BrC decreases OH by up to 30 % over South America in September, up to 20 % over southern Africa in July, and up to 15 % over other biomass burning regions. Global annual mean OH concentrations in GEOS-Chem decrease due to the presence of absorbing BrC, increasing the methyl chloroform

Observations of atmospheric ammonia from TANSO-FTS/GOSAT

Science.gov (United States)

Someya, Yu; Imasu, Ryoichi; Saitoh, Naoko; Shiomi, Kei

2017-04-01

Atmospheric ammonia has large impacts on the nitrogen cycles or atmospheric environment such as nucleation of PM2.5 particles. It is reported that ammonia in the atmosphere has been increasing rapidly with the growth of population globally and this trend must continue in the future. Satellite observation is an effective approach to get to know the global perspectives of the gas. Atmospheric ammonia is observable using the thermal infrared (TIR) spectra, and IASI, TES and CrIS had been revealed those distributions. GOSAT also has TIR band including the ammonia absorption bands. GOSAT has the shorter revisit cycle than that of the other hyper-spectral TIR sounders mentioned above, therefore, the shorter time-scale events can be represented. In addition to the importance of the impacts of ammonia itself, the concentration ratio between ammonia and the other trace gases such as CO which is one of the main targets of the GOSAT-2 project is useful as the indicator of their emission sources. In this study, we introduce an algorithm to retrieve the column amount of atmospheric ammonia based on non-linear optimal estimation (Rogers, 2000) from GOSAT spectra in the ammonia absorption band between 960 - 970 cm-1. Temperature and water vapor profiles are estimated in advance of the ammonia retrieval. The preliminary results showed significant high concentrations of ammonia in the Northern India and the Eastern China as pointed out in the previous researches. We will discuss the global distribution of ammonia in the presentation.

Opo lidar sounding of trace atmospheric gases in the 3 – 4 μm spectral range

Directory of Open Access Journals (Sweden)

Romanovskii Oleg A.

2018-01-01

Full Text Available The applicability of a KTA crystal-based laser system with optical parametric oscillators (OPO generation to lidar sounding of the atmosphere in the spectral range 3–4 μm is studied in this work. A technique developed for lidar sounding of trace atmospheric gases (TAG is based on differential absorption lidar (DIAL method and differential optical absorption spectroscopy (DOAS. The DIAL-DOAS technique is tested to estimate its efficiency for lidar sounding of atmospheric trace gases. The numerical simulation performed shows that a KTA-based OPO laser is a promising source of radiation for remote DIAL-DOAS sounding of the TAGs under study along surface tropospheric paths. A possibility of using a PD38-03-PR photodiode for the DIAL gas analysis of the atmosphere is shown.

Mini-DIAL system measurements coupled with multivariate data analysis to identify TIC and TIM simulants: preliminary absorption database analysis

International Nuclear Information System (INIS)

Gaudio, P; Malizia, A; Gelfusa, M; Poggi, L.A.; Martinelli, E.; Di Natale, C.; Bellecci, C.

2017-01-01

Nowadays Toxic Industrial Components (TICs) and Toxic Industrial Materials (TIMs) are one of the most dangerous and diffuse vehicle of contamination in urban and industrial areas. The academic world together with the industrial and military one are working on innovative solutions to monitor the diffusion in atmosphere of such pollutants. In this phase the most common commercial sensors are based on “point detection” technology but it is clear that such instruments cannot satisfy the needs of the smart cities. The new challenge is developing stand-off systems to continuously monitor the atmosphere. Quantum Electronics and Plasma Physics (QEP) research group has a long experience in laser system development and has built two demonstrators based on DIAL (Differential Absorption of Light) technology could be able to identify chemical agents in atmosphere. In this work the authors will present one of those DIAL system, the miniaturized one, together with the preliminary results of an experimental campaign conducted on TICs and TIMs simulants in cell with aim of use the absorption database for the further atmospheric an analysis using the same DIAL system. The experimental results are analysed with standard multivariate data analysis technique as Principal Component Analysis (PCA) to develop a classification model aimed at identifying organic chemical compound in atmosphere. The preliminary results of absorption coefficients of some chemical compound are shown together pre PCA analysis. (paper)

The molecular physics of photolytic fractionation of sulfur and oxygen isotopes in planetary atmospheres (Invited)

Science.gov (United States)

Johnson, M. S.; Schmidt, J. A.; Hattori, S.; Danielache, S.; Meusinger, C.; Schinke, R.; Ueno, Y.; Nanbu, S.; Kjaergaard, H. G.; Yoshida, N.

2013-12-01

Atmospheric photochemistry is able to produce large mass independent anomalies in atmospheric trace gases that can be found in geological and cryospheric records. This talk will present theoretical and experimental investigations of the molecular mechanisms producing photolytic fractionation of isotopes with special attention to sulfur and oxygen. The zero point vibrational energy (ZPE) shift and reflection principle theories are starting points for estimating isotopic fractionation, but these models ignore effects arising from isotope-dependent changes in couplings between surfaces, excited state dynamics, line densities and hot band populations. The isotope-dependent absorption spectra of the isotopologues of HCl, N2O, OCS, CO2 and SO2 have been examined in a series of papers and these results are compared with experiment and ZPE/reflection principle models. Isotopic fractionation in planetary atmospheres has many interesting applications. The UV absorption of CO2 is the basis of photochemistry in the CO2-rich atmospheres of the ancient Earth, and of Mars and Venus. For the first time we present accurate temperature and isotope dependent CO2 absorption cross sections with important implications for photolysis rates of SO2 and H2O, and the production of a mass independent anomaly in the Ox reservoir. Experimental and theoretical results for OCS have implications for the modern stratospheric sulfur budget. The absorption bands of SO2 are complex with rich structure producing isotopic fractionation in photolysis and photoexcitation.

Who Needs Replication?

Science.gov (United States)

Porte, Graeme

2013-01-01

In this paper, the editor of a recent Cambridge University Press book on research methods discusses replicating previous key studies to throw more light on their reliability and generalizability. Replication research is presented as an accepted method of validating previous research by providing comparability between the original and replicated…

Absorption by airborne and deposited particles in the 8-13 micrometer range

Energy Technology Data Exchange (ETDEWEB)

Fischer, K; Grassl, H

1975-01-01

The absorption of radiation by natural aerosol particles was measured in the 8 to 13 micrometer wavelength interval. A comparison was made between an in situ method and measurements of particles of deposited form. The results are in agreement to about 30 percent. The main feature of aerosol absorption within the infrared window is a strong absorption peak near 9 micrometers caused by sulfate or quartz particles present in all continental aerosol types. Consequences for the atmospheric heat balance are clear sky cooling rates growing from about 2 per cent in the tropics to about 20 per cent of the total cooling in arctic regions under normal conditions, additionally increasing with increasing relative humidity.

Enhanced Absorption in Organic Thin-Films from Imprinted Concave Nanostructures

DEFF Research Database (Denmark)

Goszczak, Arkadiusz Jaroslaw; Rubahn, Horst-Günter; Madsen, Morten

2017-01-01

In this work, a rapid, replicable method for imprinting concave nanostructures to be used as functional light-trapping nanostructures in organic thin-films is presented. Porous anodic alumina templates were fabricated both by anodization of thick Al foils and by anodization of submicrometer thin Al...... patterns and used for imprinting of spin coated photoresist on glass substrates. We have investigated semi-periodic and aperiodic imprinted large concave patterns fabricated from rigid masters after anodization of Al in H3PO4. We show that metal covered imprinted concaves show enhancement in absorption...

Mechanisms of bacterial DNA replication restart

Science.gov (United States)

Windgassen, Tricia A; Wessel, Sarah R; Bhattacharyya, Basudeb

2018-01-01

Abstract Multi-protein DNA replication complexes called replisomes perform the essential process of copying cellular genetic information prior to cell division. Under ideal conditions, replisomes dissociate only after the entire genome has been duplicated. However, DNA replication rarely occurs without interruptions that can dislodge replisomes from DNA. Such events produce incompletely replicated chromosomes that, if left unrepaired, prevent the segregation of full genomes to daughter cells. To mitigate this threat, cells have evolved ‘DNA replication restart’ pathways that have been best defined in bacteria. Replication restart requires recognition and remodeling of abandoned replication forks by DNA replication restart proteins followed by reloading of the replicative DNA helicase, which subsequently directs assembly of the remaining replisome subunits. This review summarizes our current understanding of the mechanisms underlying replication restart and the proteins that drive the process in Escherichia coli (PriA, PriB, PriC and DnaT). PMID:29202195

Solid State Laser Technology Development for Atmospheric Sensing Applications

Science.gov (United States)

Barnes, James C.

1998-01-01

NASA atmospheric scientists are currently planning active remote sensing missions that will enable global monitoring of atmospheric ozone, water vapor, aerosols and clouds as well as global wind velocity. The measurements of these elements and parameters are important because of the effects they have on climate change, atmospheric chemistry and dynamics, atmospheric transport and, in general, the health of the planet. NASA will make use of Differential Absorption Lidar (DIAL) and backscatter lidar techniques for active remote sensing of molecular constituents and atmospheric phenomena from advanced high-altitude aircraft and space platforms. This paper provides an overview of NASA Langley Research Center's (LaRC's) development of advanced solid state lasers, harmonic generators, and wave mixing techniques aimed at providing the broad range of wavelengths necessary to meet measurement goals of NASA's Earth Science Enterprise.

What Should Researchers Expect When They Replicate Studies? A Statistical View of Replicability in Psychological Science.

Science.gov (United States)

Patil, Prasad; Peng, Roger D; Leek, Jeffrey T

2016-07-01

A recent study of the replicability of key psychological findings is a major contribution toward understanding the human side of the scientific process. Despite the careful and nuanced analysis reported, the simple narrative disseminated by the mass, social, and scientific media was that in only 36% of the studies were the original results replicated. In the current study, however, we showed that 77% of the replication effect sizes reported were within a 95% prediction interval calculated using the original effect size. Our analysis suggests two critical issues in understanding replication of psychological studies. First, researchers' intuitive expectations for what a replication should show do not always match with statistical estimates of replication. Second, when the results of original studies are very imprecise, they create wide prediction intervals-and a broad range of replication effects that are consistent with the original estimates. This may lead to effects that replicate successfully, in that replication results are consistent with statistical expectations, but do not provide much information about the size (or existence) of the true effect. In this light, the results of the Reproducibility Project: Psychology can be viewed as statistically consistent with what one might expect when performing a large-scale replication experiment. © The Author(s) 2016.

Absorption of Carbon Dioxide in Aqueous Solutions of N-methyldiethanolamine Mixtures

Science.gov (United States)

Ma’mun, S.; Svendsen, H. F.

2018-05-01

Carbon dioxide (CO2) is one of the greenhouse gases (GHG) that has contributed to the global warming problem. Carbon dioxide is produced in large quantity from coal-fired power plants, iron and steel production, cement production, chemical and petrochemical industries, natural gas purification, and transportation. Some efforts to reduce the CO2 emissions to the atmosphere are then required. Amine-based absorption may be an option for post-combustion capture. The objective of this study is to measure the effect of promoter addition as well as MDEA concentration for the CO2 absorption into the aqueous solutions of MDEA to improve its performances, i.e. increasing the absorption rate and the absorption capacity. Absorption of CO2 in aqueous solutions of MDEA mixtures were measured at 40 °C in a bubble tank reactor. The systems tested were the mixtures of 30 wt% MDEA with 5 and 10 wt% BEA and the mixtures of 40 and 50 wt% MDEA with 6 wt% AEEA. It was found that for MDEA-BEA-H2O mixtures, the higher the promoter concentraation the higher the CO2 absorption rate, while for the MDEA-AEEA-H2O mixtures, the higher the MDEA concentration the lower the CO2 absorption rate.

Fourier transform infrared absorption spectroscopy characterization of gaseous atmospheric pressure plasmas with 2 mm spatial resolution

Energy Technology Data Exchange (ETDEWEB)

Laroche, G. [Laboratoire d' Ingenierie de Surface, Centre de Recherche sur les Materiaux Avances, Departement de genie des mines, de la metallurgie et des materiaux, Universite Laval, 1065, avenue de la Medecine, Quebec G1V 0A6 (Canada); Centre de recherche du CHUQ, Hopital St Francois d' Assise, 10, rue de l' Espinay, local E0-165, Quebec G1L 3L5 (Canada); Vallade, J. [Laboratoire Procedes, Materiaux et Energie Solaire, PROMES, CNRS, Technosud, Rambla de la Thermodynamique, F-66100 Perpignan (France); Agence de l' environnement et de la Ma Latin-Small-Letter-Dotless-I -carettrise de l' Energie, 20, avenue du Gresille, BP 90406, F-49004 Angers Cedex 01 (France); Bazinette, R.; Hernandez, E.; Hernandez, G.; Massines, F. [Laboratoire Procedes, Materiaux et Energie Solaire, PROMES, CNRS, Technosud, Rambla de la Thermodynamique, F-66100 Perpignan (France); Nijnatten, P. van [OMT Solutions bv, High Tech Campus 9, 5656AE Eindhoven (Netherlands)

2012-10-15

This paper describes an optical setup built to record Fourier transform infrared (FTIR) absorption spectra in an atmospheric pressure plasma with a spatial resolution of 2 mm. The overall system consisted of three basic parts: (1) optical components located within the FTIR sample compartment, making it possible to define the size of the infrared beam (2 mm Multiplication-Sign 2 mm over a path length of 50 mm) imaged at the site of the plasma by (2) an optical interface positioned between the spectrometer and the plasma reactor. Once through the plasma region, (3) a retro-reflector module, located behind the plasma reactor, redirected the infrared beam coincident to the incident path up to a 45 Degree-Sign beamsplitter to reflect the beam toward a narrow-band mercury-cadmium-telluride detector. The antireflective plasma-coating experiments performed with ammonia and silane demonstrated that it was possible to quantify 42 and 2 ppm of these species in argon, respectively. In the case of ammonia, this was approximately three times less than this gas concentration typically used in plasma coating experiments while the silane limit of quantification was 35 times lower. Moreover, 70% of the incoming infrared radiation was focused within a 2 mm width at the site of the plasma, in reasonable agreement with the expected spatial resolution. The possibility of reaching this spatial resolution thus enabled us to measure the gaseous precursor consumption as a function of their residence time in the plasma.

Absorption Spectra Of Rbcl:Yb Rbbr:Yb And Rbi:Yb Crystals ...

African Journals Online (AJOL)

Single crystals of rubidium chloride, bromide and iodide were doped with substitutional divalent ytterbium, Yb ions, by heating them in ytterbium atmosphere. The absorption spectra of the Yb doped crystals were measured at room and liquid nitrogen temperatures. The spectra were found to consist of intense broad ...

Determination of absorption coefficient based on laser beam thermal blooming in gas-filled tube.

Science.gov (United States)

Hafizi, B; Peñano, J; Fischer, R; DiComo, G; Ting, A

2014-08-01

Thermal blooming of a laser beam propagating in a gas-filled tube is investigated both analytically and experimentally. A self-consistent formulation taking into account heating of the gas and the resultant laser beam spreading (including diffraction) is presented. The heat equation is used to determine the temperature variation while the paraxial wave equation is solved in the eikonal approximation to determine the temporal and spatial variation of the Gaussian laser spot radius, Gouy phase (longitudinal phase delay), and wavefront curvature. The analysis is benchmarked against a thermal blooming experiment in the literature using a CO₂ laser beam propagating in a tube filled with air and propane. New experimental results are presented in which a CW fiber laser (1 μm) propagates in a tube filled with nitrogen and water vapor. By matching laboratory and theoretical results, the absorption coefficient of water vapor is found to agree with calculations using MODTRAN (the MODerate-resolution atmospheric TRANsmission molecular absorption database) and HITRAN (the HIgh-resolution atmospheric TRANsmission molecular absorption database).

Laboratory studies of nitrate radical chemistry - application to atmospheric processes

Energy Technology Data Exchange (ETDEWEB)

Noremsaune, Ingse

1997-12-31

This thesis studies atmospheric chemistry and tries in particular to fill gaps in the data base of atmospheric reactions. It studies the nitrate radical reactions with chloroethenes and with but-2-yne (2-butyne). The mechanisms and rate coefficients for the NO{sub 3}-initiated degradation of the chloroethenes and 2-butyne were investigated by means of the static reaction chamber and the fast flow-discharge technique. The reactions between the nitrate radical and the chloroethenes were studied at atmospheric pressure in a reaction chamber with synthetic air as bath gas. FTIR (Fourier Transform InfraRed spectroscopy) spectroscopy was used to follow the reactions and to identify the products. Products were observed for the reactions with (E)-1,2-dichloroethene and tetrachloroethene, although the absorption bands are weak. The alkyl peroxynitrate and nitrate compounds form very strong and characteristic absorption bands. The rate coefficients for the reactions between NO{sub 3} and the chloroethenes were investigated at room temperature by three different methods. The results are given in tables. 132 refs., 44 figs., 21 tabs.

DNA Replication Profiling Using Deep Sequencing.

Science.gov (United States)

Saayman, Xanita; Ramos-Pérez, Cristina; Brown, Grant W

2018-01-01

Profiling of DNA replication during progression through S phase allows a quantitative snap-shot of replication origin usage and DNA replication fork progression. We present a method for using deep sequencing data to profile DNA replication in S. cerevisiae.

Remote sensing of atmospheric chemistry; Proceedings of the Meeting, Orlando, FL, Apr. 1-3, 1991

Science.gov (United States)

McElroy, James L.; McNeal, Robert J.

The present volume on remote sensing of atmospheric chemistry discusses special remote sensing space observations and field experiments to study chemical change in the atmosphere, network monitoring for detection of stratospheric chemical change, stratospheric chemistry studies, and the combining of model, in situ, and remote sensing in atmospheric chemistry. Attention is given to the measurement of tropospheric carbon monoxide using gas filter radiometers, long-path differential absorption measurements of tropospheric molecules, air quality monitoring with the differential optical absorption spectrometer, and a characterization of tropospheric methane through space-based remote sensing. Topics addressed include microwave limb sounder experiments for UARS and EOS, an overview of the spectroscopy of the atmosphere using an FIR emission experiment, the detection of stratospheric ozone trends by ground-based microwave observations, and a FIR Fabry-Perot spectrometer for OH measurements. (For individual items see A93-31377 to A93-31412)

Induction of UV-resistant DNA replication in Escherichia coli: Induced stable DNA replication as an SOS function

International Nuclear Information System (INIS)

Kogoma, T.; Torrey, T.A.; Connaughton, M.J.

1979-01-01

The striking similarity between the treatments that induce SOS functions and those that result in stable DNA replication (continuous DNA replication in the absence of protein synthesis) prompted us to examine the possibility of stable DNA replication being a recA + lexA + -dependent SOS function. In addition to the treatments previously reported, ultraviolet (UV) irradiation or treatment with mitomycin C was also found to induce stable DNA replication. The thermal treatment of tif-1 strains did not result in detectable levels of stable DNA replication, but nalidixic acid readily induced the activity in these strains. The induction of stable DNA replication with nalidixic acid was severely suppressed in tif-1 lex A mutant strains. The inhibitory activity of lexA3 was negated by the presence of the spr-5l mutation, an intragenic suppressor of lexA3. Induced stable DNA replication was found to be considerably more resistant to UV irradiation than normal replication both in a uvr A6 strain and a uvr + strain. The UV-resistant replication occurred mostly in the semiconservative manner. The possible roles of stable DNA replication in repair of damaged DNA are discussed. (orig.)

History of one family of atmospheric radiative transfer codes

Science.gov (United States)

Anderson, Gail P.; Wang, Jinxue; Hoke, Michael L.; Kneizys, F. X.; Chetwynd, James H., Jr.; Rothman, Laurence S.; Kimball, L. M.; McClatchey, Robert A.; Shettle, Eric P.; Clough, Shepard (.; Gallery, William O.; Abreu, Leonard W.; Selby, John E. A.

1994-12-01

Beginning in the early 1970's, the then Air Force Cambridge Research Laboratory initiated a program to develop computer-based atmospheric radiative transfer algorithms. The first attempts were translations of graphical procedures described in a 1970 report on The Optical Properties of the Atmosphere, based on empirical transmission functions and effective absorption coefficients derived primarily from controlled laboratory transmittance measurements. The fact that spectrally-averaged atmospheric transmittance (T) does not obey the Beer-Lambert Law (T equals exp(-(sigma) (DOT)(eta) ), where (sigma) is a species absorption cross section, independent of (eta) , the species column amount along the path) at any but the finest spectral resolution was already well known. Band models to describe this gross behavior were developed in the 1950's and 60's. Thus began LOWTRAN, the Low Resolution Transmittance Code, first released in 1972. This limited initial effort has how progressed to a set of codes and related algorithms (including line-of-sight spectral geometry, direct and scattered radiance and irradiance, non-local thermodynamic equilibrium, etc.) that contain thousands of coding lines, hundreds of subroutines, and improved accuracy, efficiency, and, ultimately, accessibility. This review will include LOWTRAN, HITRAN (atlas of high-resolution molecular spectroscopic data), FASCODE (Fast Atmospheric Signature Code), and MODTRAN (Moderate Resolution Transmittance Code), their permutations, validations, and applications, particularly as related to passive remote sensing and energy deposition.

Investigation of black and brown carbon multiple-wavelength-dependent light absorption from biomass and fossil fuel combustion source emissions

Science.gov (United States)

Michael R. Olson; Mercedes Victoria Garcia; Michael A. Robinson; Paul Van Rooy; Mark A. Dietenberger; Michael Bergin; James Jay Schauer

2015-01-01

Quantification of the black carbon (BC) and brown carbon (BrC) components of source emissions is critical to understanding the impact combustion aerosols have on atmospheric light absorption. Multiple-wavelength absorption was measured from fuels including wood, agricultural biomass, coals, plant matter, and petroleum distillates in controlled combustion settings....

Aerosol Absorption Measurements in MILAGRO.

Science.gov (United States)

Gaffney, J. S.; Marley, N. A.; Arnott, W. P.; Paredes-Miranda, L.; Barnard, J. C.

2007-12-01

to carbonyl- and nitro- functional groups on conjugated and aromatic organic structures (e.g. PAH, and terpene derived products). Using 12-hour fine (0.1-1.0 micron) aerosol samples collected in the field on quartz filters, uv/vis and infrared spectra were obtained in the laboratory using integrating spheres and diffuse reflectance spectroscopy, respectively. An inter-comparison of the "real-time" measurements made by the photo-acoustic, aethalometer and MAAP techniques have been described. In addition, the in situ aethalometer (seven-channel) results are compared with continuous integrating sphere uv-visible spectra to examine the angstrom absorption coefficient variance. These results will be briefly overviewed and the specific posters detailing these results will be highlighted highlighted. This work was performed as part of the Department of Energy's Megacity Aerosol Experiment - Mexico City under the support of the Atmospheric Science Program. "This researchwas supported by the Office of Science (BER), U. S. Department of Energy, Grant No. DE-FG02-07ER64329.

Chromatin replication and epigenome maintenance

DEFF Research Database (Denmark)

Alabert, Constance; Groth, Anja

2012-01-01

Stability and function of eukaryotic genomes are closely linked to chromatin structure and organization. During cell division the entire genome must be accurately replicated and the chromatin landscape reproduced on new DNA. Chromatin and nuclear structure influence where and when DNA replication...... initiates, whereas the replication process itself disrupts chromatin and challenges established patterns of genome regulation. Specialized replication-coupled mechanisms assemble new DNA into chromatin, but epigenome maintenance is a continuous process taking place throughout the cell cycle. If DNA...

36 CFR 910.64 - Replication.

Science.gov (United States)

2010-07-01

... 36 Parks, Forests, and Public Property 3 2010-07-01 2010-07-01 false Replication. 910.64 Section 910.64 Parks, Forests, and Public Property PENNSYLVANIA AVENUE DEVELOPMENT CORPORATION GENERAL... DEVELOPMENT AREA Glossary of Terms § 910.64 Replication. Replication means the process of using modern methods...

Replication stress-induced chromosome breakage is correlated with replication fork progression and is preceded by single-stranded DNA formation.

Science.gov (United States)

Feng, Wenyi; Di Rienzi, Sara C; Raghuraman, M K; Brewer, Bonita J

2011-10-01

Chromosome breakage as a result of replication stress has been hypothesized to be the direct consequence of defective replication fork progression, or "collapsed" replication forks. However, direct and genome-wide evidence that collapsed replication forks give rise to chromosome breakage is still lacking. Previously we showed that a yeast replication checkpoint mutant mec1-1, after transient exposure to replication impediment imposed by hydroxyurea (HU), failed to complete DNA replication, accumulated single-stranded DNA (ssDNA) at the replication forks, and fragmented its chromosomes. In this study, by following replication fork progression genome-wide via ssDNA detection and by direct mapping of chromosome breakage after HU exposure, we have tested the hypothesis that the chromosome breakage in mec1 cells occurs at collapsed replication forks. We demonstrate that sites of chromosome breakage indeed correlate with replication fork locations. Moreover, ssDNA can be detected prior to chromosome breakage, suggesting that ssDNA accumulation is the common precursor to double strand breaks at collapsed replication forks.

Replication Research and Special Education

Science.gov (United States)

Travers, Jason C.; Cook, Bryan G.; Therrien, William J.; Coyne, Michael D.

2016-01-01

Replicating previously reported empirical research is a necessary aspect of an evidence-based field of special education, but little formal investigation into the prevalence of replication research in the special education research literature has been conducted. Various factors may explain the lack of attention to replication of special education…

Microwave Propagation Attenuation due to Earth's Atmosphere and Weather at SHF Band

Science.gov (United States)

Ho, Christian; Wang, Charles; Gritton, Kelly; Angkasa, Kris

2004-01-01

In this study we have estimated radio wave propagation losses at super high frequency (SHF) band by applying available propagation models into several Air Force benchmark scenarios. The study shows that dominantly additional losses over the free space loss are atmospheric absorption, clouds, fog, and precipitation, as well as scintillation /multipath at low elevation angles. The free space loss equation has been modified to include all atmospheric attenuation and fading effects that cannot be neglected over the range of frequency of interest. Terrain profiles along all directions of interest within the coastal areas and inland areas for four benchmark cases have been analyzed in detail. We find that while the atmospheric gaseous absorption plays a significant role under a clear weather, heavy rainfalls can cause several tens of dB loss for a 100- km path through the rain. At very low elevation angles (propagation between the east and the west coastal receiving stations.

Eukaryotic DNA Replication Fork.

Science.gov (United States)

Burgers, Peter M J; Kunkel, Thomas A

2017-06-20

This review focuses on the biogenesis and composition of the eukaryotic DNA replication fork, with an emphasis on the enzymes that synthesize DNA and repair discontinuities on the lagging strand of the replication fork. Physical and genetic methodologies aimed at understanding these processes are discussed. The preponderance of evidence supports a model in which DNA polymerase ε (Pol ε) carries out the bulk of leading strand DNA synthesis at an undisturbed replication fork. DNA polymerases α and δ carry out the initiation of Okazaki fragment synthesis and its elongation and maturation, respectively. This review also discusses alternative proposals, including cellular processes during which alternative forks may be utilized, and new biochemical studies with purified proteins that are aimed at reconstituting leading and lagging strand DNA synthesis separately and as an integrated replication fork.

Responses of epidermal cell turgor pressure and photosynthetic activity of leaves of the atmospheric epiphyte Tillandsia usneoides (Bromeliaceae) after exposure to high humidity.

Science.gov (United States)

Martin, Craig E; Rux, Guido; Herppich, Werner B

2013-01-01

It has been well-established that many epiphytic bromeliads of the atmospheric-type morphology, i.e., with leaf surfaces completely covered by large, overlapping, multicellular trichomes, are capable of absorbing water vapor from the atmosphere when air humidity increases. It is much less clear, however, whether this absorption of water vapor can hydrate the living cells of the leaves and, as a consequence, enhance physiological processes in such cells. The goal of this research was to determine if the absorption of atmospheric water vapor by the atmospheric epiphyte Tillandsia usneoides results in an increase in turgor pressure in leaf epidermal cells that subtend the large trichomes, and, by using chlorophyll fluorescence techniques, to determine if the absorption of atmospheric water vapor by leaves of this epiphyte results in increased photosynthetic activity. Results of measurements on living cells of attached leaves of this epiphytic bromeliad, using a pressure probe and of whole-shoot fluorescence imaging analyses clearly illustrated that the turgor pressure of leaf epidermal cells did not increase, and the photosynthetic activity of leaves did not increase, following exposure of the leaves to high humidity air. These results experimentally demonstrate, for the first time, that the absorption of water vapor following increases in atmospheric humidity in atmospheric epiphytic bromeliads is mostly likely a physical phenomenon resulting from hydration of non-living leaf structures, e.g., trichomes, and has no physiological significance for the plant's living tissues. Copyright © 2012 Elsevier GmbH. All rights reserved.

The microwave limb sounder for the Upper Atmosphere Research Satellite

Science.gov (United States)

Waters, J. W.; Peckham, G. E.; Suttie, R. A.; Curtis, P. D.; Maddison, B. J.; Harwood, R. S.

1988-01-01

The Microwave Limb Sounder was designed to map the concentrations of trace gases from the stratosphere to the lower thermosphere, to improve understanding of the photochemical reactions which take place in this part of the atmosphere. The instrument will measure the intensity of thermal radiation from molecules in the atmosphere at frequencies corresponding to rotational absorption bands of chlorine monoxide, ozone, and water vapor. Molecular concentration profiles will be determined over a height range of 15 to 80 km (20 to 45 km for C10). The 57 deg inclination orbit proposed for the Upper Atmosphere Research Satellite will allow global coverage.

Determination of traces of fluorine and hydrofluoric acid in the atmosphere

International Nuclear Information System (INIS)

Francois, H.; Grand-Clement, A.M.; Faltot, G.

1963-01-01

As some publications highlighted hazards related to the presence of dispersed fluorine and hydrofluoric acid in the atmosphere, the authors, after a brief recall of some measurement devices presented in some publications, present an experimental set-up which aims at measuring traces of these compounds in the atmosphere. They notably describe the preparation of a controlled fluorine atmosphere, discuss the efficiency of the absorption-based trap, report the study of the electrolytic analysis cell, discuss its calibration. They also report the study of the influence of temperature and of the presence of disturbing ions

The progression of replication forks at natural replication barriers in live bacteria

NARCIS (Netherlands)

Moolman, M.C.; Tiruvadi Krishnan, S; Kerssemakers, J.W.J.; de Leeuw, R.; Lorent, V.J.F.; Sherratt, David J.; Dekker, N.H.

2016-01-01

Protein-DNA complexes are one of the principal barriers the replisome encounters during replication. One such barrier is the Tus-ter complex, which is a direction dependent barrier for replication fork progression. The details concerning the dynamics of the replisome when encountering these

Flock House virus subgenomic RNA3 is replicated and its replication correlates with transactivation of RNA2

International Nuclear Information System (INIS)

Eckerle, Lance D.; Albarino, Cesar G.; Ball, L. Andrew.

2003-01-01

The nodavirus Flock House virus has a bipartite genome composed of RNAs 1 and 2, which encode the catalytic component of the RNA-dependent RNA polymerase (RdRp) and the capsid protein precursor, respectively. In addition to catalyzing replication of the viral genome, the RdRp also transcribes from RNA1 a subgenomic RNA3, which is both required for and suppressed by RNA2 replication. Here, we show that in the absence of RNA1 replication, FHV RdRp replicated positive-sense RNA3 transcripts fully and copied negative-sense RNA3 transcripts into positive strands. The two nonstructural proteins encoded by RNA3 were dispensable for replication, but sequences in the 3'-terminal 58 nucleotides were required. RNA3 variants that failed to replicate also failed to transactivate RNA2. These results imply that RNA3 is naturally produced both by transcription from RNA1 and by subsequent RNA1-independent replication and that RNA3 replication may be necessary for transactivation of RNA2

Rotating Arc Jet Test Model: Time-Accurate Trajectory Heat Flux Replication in a Ground Test Environment

Science.gov (United States)

Laub, Bernard; Grinstead, Jay; Dyakonov, Artem; Venkatapathy, Ethiraj

2011-01-01

Though arc jet testing has been the proven method employed for development testing and certification of TPS and TPS instrumentation, the operational aspects of arc jets limit testing to selected, but constant, conditions. Flight, on the other hand, produces timevarying entry conditions in which the heat flux increases, peaks, and recedes as a vehicle descends through an atmosphere. As a result, we are unable to "test as we fly." Attempts to replicate the time-dependent aerothermal environment of atmospheric entry by varying the arc jet facility operating conditions during a test have proven to be difficult, expensive, and only partially successful. A promising alternative is to rotate the test model exposed to a constant-condition arc jet flow to yield a time-varying test condition at a point on a test article (Fig. 1). The model shape and rotation rate can be engineered so that the heat flux at a point on the model replicates the predicted profile for a particular point on a flight vehicle. This simple concept will enable, for example, calibration of the TPS sensors on the Mars Science Laboratory (MSL) aeroshell for anticipated flight environments.

Quantifying black carbon light absorption enhancement with a novel statistical approach

Science.gov (United States)

Wu, Cheng; Wu, Dui; Zhen Yu, Jian

2018-01-01

Black carbon (BC) particles in the atmosphere can absorb more light when coated by non-absorbing or weakly absorbing materials during atmospheric aging, due to the lensing effect. In this study, the light absorption enhancement factor, Eabs, was quantified using a 1-year measurement of mass absorption efficiency (MAE) in the Pearl River Delta region (PRD). A new approach for calculating primary MAE (MAEp), the key for Eabs estimation, is demonstrated using the minimum R squared (MRS) method, exploring the inherent source independency between BC and its coating materials. A unique feature of Eabs estimation with the MRS approach is its insensitivity to systematic biases in elemental carbon (EC) and σabs measurements. The annual average Eabs550 is found to be 1.50 ± 0.48 (±1 SD) in the PRD region, exhibiting a clear seasonal pattern with higher values in summer and lower in winter. Elevated Eabs in the summertime is likely associated with aged air masses, predominantly of marine origin, along with long-range transport of biomass-burning-influenced air masses from Southeast Asia. Core-shell Mie simulations along with measured Eabs and absorption Ångström exponent (AAE) constraints suggest that in the PRD, the coating materials are unlikely to be dominated by brown carbon and the coating thickness is higher in the rainy season than in the dry season.

VARIABILITY OF WATER AND OXYGEN ABSORPTION BANDS IN THE DISK-INTEGRATED SPECTRA OF EARTH

International Nuclear Information System (INIS)

Fujii, Yuka; Suto, Yasushi; Turner, Edwin L.

2013-01-01

We study the variability of major atmospheric absorption features in the disk-integrated spectra of Earth with future application to Earth-analogs in mind, concentrating on the diurnal timescale. We first analyze observations of Earth provided by the EPOXI mission, and find 5%-20% fractional variation of the absorption depths of H 2 O and O 2 bands, two molecules that have major signatures in the observed range. From a correlation analysis with the cloud map data from the Earth Observing Satellite (EOS), we find that their variation pattern is primarily due to the uneven cloud cover distribution. In order to account for the observed variation quantitatively, we consider a simple opaque cloud model, which assumes that the clouds totally block the spectral influence of the atmosphere below the cloud layer, equivalent to assuming that the incident light is completely scattered at the cloud top level. The model is reasonably successful, and reproduces the EPOXI data from the pixel-level EOS cloud/water vapor data. A difference in the diurnal variability patterns of H 2 O and O 2 bands is ascribed to the differing vertical and horizontal distribution of those molecular species in the atmosphere. On Earth, the inhomogeneous distribution of atmospheric water vapor is due to the existence of its exchange with liquid and solid phases of H 2 O on the planet's surface on a timescale short compared with atmospheric mixing times. If such differences in variability patterns were detected in spectra of Earth-analogs, it would provide the information on the inhomogeneous composition of their atmospheres.

DETECTING AND CONSTRAINING N{sub 2} ABUNDANCES IN PLANETARY ATMOSPHERES USING COLLISIONAL PAIRS

Energy Technology Data Exchange (ETDEWEB)

Schwieterman, Edward W.; Meadows, Victoria S.; Misra, Amit [Astronomy Department, University of Washington, Seattle, WA 98115 (United States); Robinson, Tyler D.; Domagal-Goldman, Shawn, E-mail: eschwiet@uw.edu [NAI Virtual Planetary Laboratory, Seattle, WA 98115 (United States)

2015-09-01

Characterizing the bulk atmosphere of a terrestrial planet is important for determining surface pressure and potential habitability. Molecular nitrogen (N{sub 2}) constitutes the largest fraction of Earth's atmosphere and is likely to be a major constituent of many terrestrial exoplanet atmospheres. Due to its lack of significant absorption features, N{sub 2} is extremely difficult to remotely detect. However, N{sub 2} produces an N{sub 2}–N{sub 2} collisional pair, (N{sub 2}){sub 2}, which is spectrally active. Here we report the detection of (N{sub 2}){sub 2} in Earth's disk-integrated spectrum. By comparing spectra from NASA's EPOXI mission to synthetic spectra from the NASA Astrobiology Institute's Virtual Planetary Laboratory three-dimensional spectral Earth model, we find that (N{sub 2}){sub 2} absorption produces a ∼35% decrease in flux at 4.15 μm. Quantifying N{sub 2} could provide a means of determining bulk atmospheric composition for terrestrial exoplanets and could rule out abiotic O{sub 2} generation, which is possible in rarefied atmospheres. To explore the potential effects of (N{sub 2}){sub 2} in exoplanet spectra, we used radiative transfer models to generate synthetic emission and transit transmission spectra of self-consistent N{sub 2}–CO{sub 2}–H{sub 2}O atmospheres, and analytic N{sub 2}–H{sub 2} and N{sub 2}–H{sub 2}–CO{sub 2} atmospheres. We show that (N{sub 2}){sub 2} absorption in the wings of the 4.3 μm CO{sub 2} band is strongly dependent on N{sub 2} partial pressures above 0.5 bar and can significantly widen this band in thick N{sub 2} atmospheres. The (N{sub 2}){sub 2} transit transmission signal is up to 10 ppm for an Earth-size planet with an N{sub 2}-dominated atmosphere orbiting within the habitable zone of an M5V star and could be substantially larger for planets with significant H{sub 2} mixing ratios.

Investigation of Titan's surface and atmosphere photometric functions using the Cassini/VIMS instrument

Science.gov (United States)

Cornet, Thomas; Altobelli, Nicolas; Rodriguez, Sébastien; Maltagliati, Luca; Le Mouélic, Stéphane; Sotin, Christophe; Brown, Robert; Barnes, Jason; Buratti, Bonnie; Baines, Kevin; Clark, Roger; Nicholson, Phillip

2015-04-01

After 106 flybys spread over 10 years, the Cassini Visual and Infrared Mapping Spectrometer (VIMS) instrument acquired 33151 hyperspectral cubes pointing at the surface of Titan on the dayside. Despite this huge amount of data available for surface studies, and due to the strong influence of the atmosphere (methane absorption and haze scattering), Titan's surface is only visible with VIMS in 7 spectral atmospheric windows centred at 0.93, 1.08, 1.27, 1.59, 2.01, 2.7-2.8 and 5 microns. Atmospheric scattering and absorption effects dominate Titan's spectrum at wavelengths shorter than 3 microns, while the 5 micron window, almost insensitive to the haze scattering, only presents a reduced atmospheric absorption contribution to the signal recorded by VIMS. In all cases, the recorded I/F represents an apparent albedo, which depends on the atmospheric contributions and the surface photometry at each wavelength. We therefore aim to determine real albedo values for Titan's surface by finding photometric functions for the surface and the atmosphere that could be used as a basis for empirical corrections or Radiative Transfer calculations. After updating the navigation of the VIMS archive, we decomposed the entire VIMS data set into a MySQL relational database gathering the viewing geometry, location, time (season) and I/F (for pure atmosphere and surface-atmosphere images) for each pixel of the 33151 individual VIMS cubes. We then isolated all the VIMS pixels where Titan's surface has been repeatedly imaged at low phase angles (< 20 degrees) in order to characterize phase curves for the surface at 5 microns and for the atmosphere. Among these, the T88 flyby appears noteworthy, with a "Emergence-Phase Function (EPF)"-type observation: 25 cubes acquired during the same flyby, over the same area (close to Tortola Facula, in relatively dark terrains), at a constant incidence and with varying emergence and phase (from 0 to 60 degrees) angles. The data clearly exhibit an increase

Dielectric and microwave absorption properties of TiO_2/Al_2O_3 coatings and improved microwave absorption by FSS incorporation

International Nuclear Information System (INIS)

Yang, Zhaoning; Luo, Fa; Hu, Yang; Duan, Shichang; Zhu, Dongmei; Zhou, Wancheng

2016-01-01

In this paper, TiO_2/Al_2O_3 ceramic coatings were prepared by atmospheric plasma spraying (APS) technique. The phase composition and morphological characterizations of the synthesized TiO_2/Al_2O_3 powders and coatings were performed by X-ray diffraction and scanning electron microscopy (SEM), respectively. The dielectric properties of these coatings were discussed in the frequency range from 8.2 to 12.4 GHz (X-band). By calculating the microwave-absorption as a single-layer absorber, their microwave absorption properties were investigated at different content and thickness in details. Furthermore, by combination of the Frequency selective surface (FSS) and ceramic coatings, a double absorption band of the reflection loss spectra had been observed. The microwave absorbing properties of coatings both in absorbing intensity and absorbing bandwidth were improved. The reflection loss values of TiO_2/Al_2O_3 coatings exceeding −10 dB (larger than 90% absorption) can be obtained in the whole frequency range of X-band with 17 wt% TiO_2 content when the coating thickness is 2.3 mm. - Highlights: • Dielectric properties of TiO_2/Al_2O_3 ceramics fabricated by APS technique are reported for the first time. • Microwave absorption properties of TiO_2/Al_2O_3 composites are improved by FSS. • Reflection loss values exceeding −10 dB can be obtained in the whole X-band when coating thickness is 2.3 mm.

Operando Soft X-ray Absorption Spectroscopic Study on a Solid Oxide Fuel Cell Cathode during Electrochemical Oxygen Reduction.

Science.gov (United States)

Nakamura, Takashi; Oike, Ryo; Kimura, Yuta; Tamenori, Yusuke; Kawada, Tatsuya; Amezawa, Koji

2017-05-09

An operando soft X-ray absorption spectroscopic technique, which enabled the analysis of the electronic structures of the electrode materials at elevated temperature in a controlled atmosphere and electrochemical polarization, was established and its availability was demonstrated by investigating the electronic structural changes of an La 2 NiO 4+δ dense-film electrode during an electrochemical oxygen reduction reaction. Clear O K-edge and Ni L-edge X-ray absorption spectra could be obtained below 773 K under an atmospheric pressure of 100 ppm O 2 /He, 0.1 % O 2 /He, and 1 % O 2 /He gas mixtures. Considerable spectral changes were observed in the O K-edge X-ray absorption spectra upon changing the PO2 and application of electrical potential, whereas only small spectral changes were observed in Ni L-edge X-ray absorption spectra. A pre-edge peak of the O K-edge X-ray absorption spectra, which reflects the unoccupied partial density of states of Ni 3d-O 2p hybridization, increased or decreased with cathodic or anodic polarization, respectively. The electronic structural changes of the outermost orbital of the electrode material due to electrochemical polarization were successfully confirmed by the operando X-ray absorption spectroscopic technique developed in this study. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

DNA Replication Control During Drosophila Development: Insights into the Onset of S Phase, Replication Initiation, and Fork Progression

Science.gov (United States)

Hua, Brian L.; Orr-Weaver, Terry L.

2017-01-01

Proper control of DNA replication is critical to ensure genomic integrity during cell proliferation. In addition, differential regulation of the DNA replication program during development can change gene copy number to influence cell size and gene expression. Drosophila melanogaster serves as a powerful organism to study the developmental control of DNA replication in various cell cycle contexts in a variety of differentiated cell and tissue types. Additionally, Drosophila has provided several developmentally regulated replication models to dissect the molecular mechanisms that underlie replication-based copy number changes in the genome, which include differential underreplication and gene amplification. Here, we review key findings and our current understanding of the developmental control of DNA replication in the contexts of the archetypal replication program as well as of underreplication and differential gene amplification. We focus on the use of these latter two replication systems to delineate many of the molecular mechanisms that underlie the developmental control of replication initiation and fork elongation. PMID:28874453

Pluto's atmosphere in 2015 from high-resolution spectroscopy

Science.gov (United States)

Roe, Henry G.; Cook, Jason C.; Mace, Gregory N.; Holler, Bryan J.; Young, Leslie A.; McLane, Jacob N.; Jaffe, Daniel T.

2015-11-01

Pluto's thin N2/CH4 atmosphere is in vapor-pressure equilibrium with ices on its surface. The atmosphere evolves seasonally with the varying insolation pattern on Pluto's heterogenous surface, perhaps even largely freezing out to the surface during the coldest portion of Pluto's year. We use high-resolution (R≈25,000-50,000) near-infrared spectroscopy to resolve atmospheric methane absorption lines from Pluto's continuum spectra, as well as separate Pluto's atmospheric lines from the telluric spectrum. In addition to measuring the abundance and temperature of Pluto's atmospheric CH4, with broad wavelength coverage we are able to search for the inevitable products of N2/CH4 photochemistry. In 2015 we are undertaking an intensive campaign using NIRSPEC at Keck Observatory and IGRINS (Immersion Grating INfrared Spectrometer) at McDonald Observatory to coincide with the New Horizons Pluto encounter. We will report initial results from this 2015 campaign and compare the state of Pluto's atmosphere at the time of the New Horizons encounter with earlier years.

Absorption of water and lubricating oils into porous nylon

Science.gov (United States)

Bertrand, P. A.

1995-01-01

Oil and water absorption from air into sintered porous nylon can be described by infiltration into the pores of the material. This process can be modeled by a diffusion-like mechanism. For water absorption, we find a formal diffusion coefficient of 1.5 x 10(exp -4)sq cm/min when the nylon is initially dry. The diffusion coefficient is 4 x 10(exp -6)sq cm/min when the nylon is oil-impregnated prior to air exposure. In a 52% RH atmosphere, dry nylon absorbs 3% w/w water, and oil-impregnated nylon absorbs 0.6% w/w water. For oil absorption there are three steps: (1) surface absorption and infiltration into (2) larger and (3) smaller pores. Surface absorption is too fast to be measured in these experiments. The diffusion coefficient for the second step is 6 x 10(exp -4)sq cm/min for SRG-60 oil into dry nylon and 4 x 10(exp -4)sq cm/min for air-equilibrated nylon. The diffusion coefficient for the third step is about 1 x 10(exp -6)sq cm/min for both cases. The total amount of oil absorbed is 31% w/w. The interaction between water and nylon is not as strong as that between water and cotton-phenolic: oil can replace water, and only a small amount of water can enter previously oil-impregnated nylon.

Analysis of Vertical Weighting Functions for Lidar Measurements of Atmospheric CO2 and O2

Science.gov (United States)

Kooi, S.; Mao, J.; Abshire, J. B.; Browell, E. V.; Weaver, C. J.; Kawa, S. R.

2011-12-01

Several NASA groups have developed integrated path differential absorption (IPDA) lidar approaches to measure atmospheric CO2 concentrations from space as a candidates for NASA's ASCENDS space mission. For example, the Goddard CO2 Sounder approach uses two pulsed lasers to simultaneously measure both CO2 and O2 absorption in the vertical path to the surface at a number of wavelengths across a CO2 line near 1572 nm and an O2 line doublet near 764 nm. The measurements of CO2 and O2 absorption allow computing their vertically weighted number densities and then their ratios for estimating CO2 concentration relative to dry air. Since both the CO2 and O2 densities and their absorption line-width decrease with altitude, the absorption response (or weighting function) varies with both altitude and absorption wavelength. We have used some standard atmospheres and HITRAN 2008 spectroscopy to calculate the vertical weighting functions for two CO2 lines near 1571 nm and the O2 lines near 764.7 and 1260 nm for candidate online wavelength selections for ASCENDS. For CO2, the primary candidate on-line wavelengths are 10-12 pm away from line center with the weighting function peaking in the atmospheric boundary layer to measure CO2 sources and sinks at the surface. Using another on-line wavelength 3-5 pm away from line center allows the weighting function to peak in the mid- to upper troposphere, which is sensitive to CO2 transport in the free atmosphere. The Goddard CO2 sounder team developed an airborne precursor version of a space instrument. During the summers of 2009, 2010 and 2011 it has participated in airborne measurement campaigns over a variety of different sites in the US, flying with other NASA ASCENDS lidar candidates along with accurate in-situ atmospheric sensors. All flights used altitude patterns with measurements at steps in altitudes between 3 and 13 km, along with spirals from 13 km altitude to near the surface. Measurements from in-situ sensors allowed an

The progression of replication forks at natural replication barriers in live bacteria.

Science.gov (United States)

Moolman, M Charl; Tiruvadi Krishnan, Sriram; Kerssemakers, Jacob W J; de Leeuw, Roy; Lorent, Vincent; Sherratt, David J; Dekker, Nynke H

2016-07-27

Protein-DNA complexes are one of the principal barriers the replisome encounters during replication. One such barrier is the Tus-ter complex, which is a direction dependent barrier for replication fork progression. The details concerning the dynamics of the replisome when encountering these Tus-ter barriers in the cell are poorly understood. By performing quantitative fluorescence microscopy with microfuidics, we investigate the effect on the replisome when encountering these barriers in live Escherichia coli cells. We make use of an E. coli variant that includes only an ectopic origin of replication that is positioned such that one of the two replisomes encounters a Tus-ter barrier before the other replisome. This enables us to single out the effect of encountering a Tus-ter roadblock on an individual replisome. We demonstrate that the replisome remains stably bound after encountering a Tus-ter complex from the non-permissive direction. Furthermore, the replisome is only transiently blocked, and continues replication beyond the barrier. Additionally, we demonstrate that these barriers affect sister chromosome segregation by visualizing specific chromosomal loci in the presence and absence of the Tus protein. These observations demonstrate the resilience of the replication fork to natural barriers and the sensitivity of chromosome alignment to fork progression. © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research.

Replication of micro and nano surface geometries

DEFF Research Database (Denmark)

Hansen, Hans Nørgaard; Hocken, R.J.; Tosello, Guido

2011-01-01

The paper describes the state-of-the-art in replication of surface texture and topography at micro and nano scale. The description includes replication of surfaces in polymers, metals and glass. Three different main technological areas enabled by surface replication processes are presented......: manufacture of net-shape micro/nano surfaces, tooling (i.e. master making), and surface quality control (metrology, inspection). Replication processes and methods as well as the metrology of surfaces to determine the degree of replication are presented and classified. Examples from various application areas...... are given including replication for surface texture measurements, surface roughness standards, manufacture of micro and nano structured functional surfaces, replicated surfaces for optical applications (e.g. optical gratings), and process chains based on combinations of repeated surface replication steps....

A New Replication Norm for Psychology

Directory of Open Access Journals (Sweden)

Etienne P LeBel

2015-10-01

Full Text Available In recent years, there has been a growing concern regarding the replicability of findings in psychology, including a mounting number of prominent findings that have failed to replicate via high-powered independent replication attempts. In the face of this replicability “crisis of confidence”, several initiatives have been implemented to increase the reliability of empirical findings. In the current article, I propose a new replication norm that aims to further boost the dependability of findings in psychology. Paralleling the extant social norm that researchers should peer review about three times as many articles that they themselves publish per year, the new replication norm states that researchers should aim to independently replicate important findings in their own research areas in proportion to the number of original studies they themselves publish per year (e.g., a 4:1 original-to-replication studies ratio. I argue this simple approach could significantly advance our science by increasing the reliability and cumulative nature of our empirical knowledge base, accelerating our theoretical understanding of psychological phenomena, instilling a focus on quality rather than quantity, and by facilitating our transformation toward a research culture where executing and reporting independent direct replications is viewed as an ordinary part of the research process. To help promote the new norm, I delineate (1 how each of the major constituencies of the research process (i.e., funders, journals, professional societies, departments, and individual researchers can incentivize replications and promote the new norm and (2 any obstacles each constituency faces in supporting the new norm.

Atmospheric Environment Vulnerability Cause Analysis for the Beijing-Tianjin-Hebei Metropolitan Region.

Science.gov (United States)

Zhang, Yang; Shen, Jing; Li, Yu

2018-01-13

Assessing and quantifying atmospheric vulnerability is a key issue in urban environmental protection and management. This paper integrated the Analytical hierarchy process (AHP), fuzzy synthesis evaluation and Geographic Information System (GIS) spatial analysis into an Exposure-Sensitivity-Adaptive capacity (ESA) framework to quantitatively assess atmospheric environment vulnerability in the Beijing-Tianjin-Hebei (BTH) region with spatial and temporal comparisons. The elaboration of the relationships between atmospheric environment vulnerability and indices of exposure, sensitivity, and adaptive capacity supports enable analysis of the atmospheric environment vulnerability. Our findings indicate that the atmospheric environment vulnerability of 13 cities in the BTH region exhibits obvious spatial heterogeneity, which is caused by regional diversity in exposure, sensitivity, and adaptive capacity indices. The results of atmospheric environment vulnerability assessment and the cause analysis can provide guidance to pick out key control regions and recognize vulnerable indicators for study sites. The framework developed in this paper can also be replicated at different spatial and temporal scales using context-specific datasets to support environmental management.

Aerodynamic modeling of the lower part of the atmospheric boundary layer

International Nuclear Information System (INIS)

Mohamed, K.S.

1992-01-01

In this thesis , we present a study dealing with the basic meteorology concepts commonly used in air pollution. The pollutant motion in the atmosphere together with its basic mathematical concepts have been reviewed. This review includes; atmospheric forces acting on a particle, atmospheric turbulence, atmospheric stability and the most widely used atmospheric diffusion models. The resistance for pollutant transfer for different atmospheric stability classes has been derived in terms of both wind velocity profile parameters and diffusion coefficients. Therefrom, the residence time of a pollutant in the atmosphere is obtained. The dust particle trajectory and deposition in case of neutral atmosphere is formulated mathematically adopting particle Gaussian distribution. An analytical treatment for the diffusion equation with extension of the boundary conditions to include the ground surface absorption of pollutants and presence of elevated inversion layer, has been presented . The concept of decay distance is introduced and applied in a sample calculation for the dispersion of pollutants over growing wheat field

Power absorption of high-frequency electromagnetic waves in a partially ionized magnetized plasma

International Nuclear Information System (INIS)

Guo Bin; Wang Xiaogang

2005-01-01

Power absorption of high-frequency electromagnetic waves in a uniformly magnetized plasma layer covering a highly conducting surface is studied under atmosphere conditions. It is assumed that the system consists of not only electrons and positive ions but negative ions as well. By a general formula derived in our previous work [B. Guo and X. G. Wang, Plasma Sci. Tech. 7, 2645 (2005)], the total power absorption in the plasma layer with multiple reflections between an air-plasma interface and the conducting surface is computed. The results show that although the existence of negative ions greatly reduces the total power absorption, the magnetization of the plasma can, however, partially enhance it. Parameter dependence of the effects is calculated and discussed

Centromere replication timing determines different forms of genomic instability in Saccharomyces cerevisiae checkpoint mutants during replication stress.

Science.gov (United States)

Feng, Wenyi; Bachant, Jeff; Collingwood, David; Raghuraman, M K; Brewer, Bonita J

2009-12-01

Yeast replication checkpoint mutants lose viability following transient exposure to hydroxyurea, a replication-impeding drug. In an effort to understand the basis for this lethality, we discovered that different events are responsible for inviability in checkpoint-deficient cells harboring mutations in the mec1 and rad53 genes. By monitoring genomewide replication dynamics of cells exposed to hydroxyurea, we show that cells with a checkpoint deficient allele of RAD53, rad53K227A, fail to duplicate centromeres. Following removal of the drug, however, rad53K227A cells recover substantial DNA replication, including replication through centromeres. Despite this recovery, the rad53K227A mutant fails to achieve biorientation of sister centromeres during recovery from hydroxyurea, leading to secondary activation of the spindle assembly checkpoint (SAC), aneuploidy, and lethal chromosome segregation errors. We demonstrate that cell lethality from this segregation defect could be partially remedied by reinforcing bipolar attachment. In contrast, cells with the mec1-1 sml1-1 mutations suffer from severely impaired replication resumption upon removal of hydroxyurea. mec1-1 sml1-1 cells can, however, duplicate at least some of their centromeres and achieve bipolar attachment, leading to abortive segregation and fragmentation of incompletely replicated chromosomes. Our results highlight the importance of replicating yeast centromeres early and reveal different mechanisms of cell death due to differences in replication fork progression.

Enhanced Absorption in Organic Thin-Films from Imprinted Concave Nanostructures

Directory of Open Access Journals (Sweden)

Arkadiusz Jarosław GOSZCZAK

2017-02-01

Full Text Available In this work, a rapid, replicable method for imprinting concave nanostructures to be used as functional light-trapping nanostructures in organic thin-films is presented. Porous anodic alumina templates were fabricated both by anodization of thick Al foils and by anodization of submicrometer thin Al films evaporated via e-beam evaporation on Si substrates. The template formation leads to natural patterning of the underlying Al layers that are used as rigid masters for stamp fabrication, after selective etching of the porous anodic alumina. PDMS stamps were made after replicating the Al concave patterns and used for imprinting of spin coated photoresist on glass substrates. We have investigated semi-periodic and aperiodic imprinted large concave patterns fabricated from rigid masters after anodization of Al in H3PO4. We show that metal covered imprinted concaves show enhancement in absorption that is attributed to field enhancement and diffuse scattering, leading to efficient light trapping for a selected active layer material (P3HT:PCBM.DOI: http://dx.doi.org/10.5755/j01.ms.23.1.14188

Measurements of Atmospheric CO2 Column in Cloudy Weather Conditions using An IM-CW Lidar at 1.57 Micron

Science.gov (United States)

Lin, Bing; Obland, Michael; Harrison, F. Wallace; Nehrir, Amin; Browell, Edward; Campbell, Joel; Dobler, Jeremy; Meadows, Bryon; Fan, Tai-Fang; Kooi, Susan;

The Inherent Asymmetry of DNA Replication.

Science.gov (United States)

Snedeker, Jonathan; Wooten, Matthew; Chen, Xin

2017-10-06

Semiconservative DNA replication has provided an elegant solution to the fundamental problem of how life is able to proliferate in a way that allows cells, organisms, and populations to survive and replicate many times over. Somewhat lost, however, in our admiration for this mechanism is an appreciation for the asymmetries that occur in the process of DNA replication. As we discuss in this review, these asymmetries arise as a consequence of the structure of the DNA molecule and the enzymatic mechanism of DNA synthesis. Increasing evidence suggests that asymmetries in DNA replication are able to play a central role in the processes of adaptation and evolution by shaping the mutagenic landscape of cells. Additionally, in eukaryotes, recent work has demonstrated that the inherent asymmetries in DNA replication may play an important role in the process of chromatin replication. As chromatin plays an essential role in defining cell identity, asymmetries generated during the process of DNA replication may play critical roles in cell fate decisions related to patterning and development.

Replication dynamics of the yeast genome.

Science.gov (United States)

Raghuraman, M K; Winzeler, E A; Collingwood, D; Hunt, S; Wodicka, L; Conway, A; Lockhart, D J; Davis, R W; Brewer, B J; Fangman, W L

2001-10-05

Oligonucleotide microarrays were used to map the detailed topography of chromosome replication in the budding yeast Saccharomyces cerevisiae. The times of replication of thousands of sites across the genome were determined by hybridizing replicated and unreplicated DNAs, isolated at different times in S phase, to the microarrays. Origin activations take place continuously throughout S phase but with most firings near mid-S phase. Rates of replication fork movement vary greatly from region to region in the genome. The two ends of each of the 16 chromosomes are highly correlated in their times of replication. This microarray approach is readily applicable to other organisms, including humans.

The CO2 absorption spectrum in the 2.3 μm transparency window by high sensitivity CRDS: (II) Self-absorption continuum

Science.gov (United States)

Mondelain, D.; Vasilchenko, S.; Čermák, P.; Kassi, S.; Campargue, A.

2017-01-01

The CO2 absorption continuum near 2.3 μm is determined for a series of sub atmospheric pressures (250-750 Torr) by high sensitivity Cavity Ring Down Spectroscopy. An experimental procedure consisting in injecting successively a gas flow of CO2 and synthetic air, keeping constant the gas pressure in the CRDS cell, has been developed. This procedure insures a high stability of the spectra baseline by avoiding changes of the optical alignment due to pressure changes. The CO2 continuum was obtained as the difference between the CO2 absorption coefficient and a local lines simulation using a Voigt profile truncated at ±25 cm-1. Following the results of the preceding analysis of the CO2 rovibrational lines (Vasilchenko S et al. J Quant Spectrosc Radiat Transfer 10.1016/j.jqsrt.2016.07.002, a CO2 line list with intensities obtained by variational calculations and empirical line positions was preferred to the HITRAN line list. A quadratic pressure dependence of the absorption continuum is observed, with an average binary absorption coefficient increasing from 2 to 4×10-8 cm-1 amagat-2 between 4320 and 4380 cm-1. The obtained continuum is found in good agreement with a previous measurement using much higher densities (20 amagat) and a low resolution grating spectrograph and is consistent with values currently used in the analysis of Venus spectra.

LHCb experience with LFC replication

CERN Document Server

Bonifazi, F; Perez, E D; D'Apice, A; dell'Agnello, L; Düllmann, D; Girone, M; Re, G L; Martelli, B; Peco, G; Ricci, P P; Sapunenko, V; Vagnoni, V; Vitlacil, D

2008-01-01

Database replication is a key topic in the framework of the LHC Computing Grid to allow processing of data in a distributed environment. In particular, the LHCb computing model relies on the LHC File Catalog, i.e. a database which stores information about files spread across the GRID, their logical names and the physical locations of all the replicas. The LHCb computing model requires the LFC to be replicated at Tier-1s. The LCG 3D project deals with the database replication issue and provides a replication service based on Oracle Streams technology. This paper describes the deployment of the LHC File Catalog replication to the INFN National Center for Telematics and Informatics (CNAF) and to other LHCb Tier-1 sites. We performed stress tests designed to evaluate any delay in the propagation of the streams and the scalability of the system. The tests show the robustness of the replica implementation with performance going much beyond the LHCb requirements.

LHCb experience with LFC replication

International Nuclear Information System (INIS)

Bonifazi, F; Carbone, A; D'Apice, A; Dell'Agnello, L; Re, G L; Martelli, B; Ricci, P P; Sapunenko, V; Vitlacil, D; Perez, E D; Duellmann, D; Girone, M; Peco, G; Vagnoni, V

2008-01-01

Database replication is a key topic in the framework of the LHC Computing Grid to allow processing of data in a distributed environment. In particular, the LHCb computing model relies on the LHC File Catalog, i.e. a database which stores information about files spread across the GRID, their logical names and the physical locations of all the replicas. The LHCb computing model requires the LFC to be replicated at Tier-1s. The LCG 3D project deals with the database replication issue and provides a replication service based on Oracle Streams technology. This paper describes the deployment of the LHC File Catalog replication to the INFN National Center for Telematics and Informatics (CNAF) and to other LHCb Tier-1 sites. We performed stress tests designed to evaluate any delay in the propagation of the streams and the scalability of the system. The tests show the robustness of the replica implementation with performance going much beyond the LHCb requirements

Quantum cascade laser absorption spectroscopy with the amplitude-to-time conversion technique for atmospheric-pressure plasmas

International Nuclear Information System (INIS)

Yumii, Takayoshi; Kimura, Noriaki; Hamaguchi, Satoshi

2013-01-01

The NO 2 concentration, i.e., density, in a small plasma of a nitrogen oxide (NOx) treatment reactor has been measured by highly sensitive laser absorption spectroscopy. The absorption spectroscopy uses a single path of a quantum cascade laser beam passing through a plasma whose dimension is about 1 cm. The high sensitivity of spectroscopy is achieved by the amplitude-to-time conversion technique. Although the plasma reactor is designed to convert NO in the input gas to NO 2 , it has been demonstrated by this highly sensitive absorption spectroscopy that NO 2 in a simulated exhaust gas that enters the reactor is decomposed by the plasma first and then NO 2 is formed again, possibly more than it was decomposed, through a series of gas-phase reactions by the time the gas exits the reactor. The observation is consistent with that of an earlier study on NO decomposition by the same type of a plasma reactor [T. Yumii et al., J. Phys. D 46, 135202 (2013)], in which a high concentration of NO 2 was observed at the exit of the reactor.

The behaviour of the atmosphere of σ scorpii

International Nuclear Information System (INIS)

Costa, A.; Ringuelet, A.

1985-01-01

The β CMa star σ Scorpii has been observed spectroscopically along two cycles. It has been found that absorption lines representing different depths in the atmosphere (excluding the transition region) yield different radial velocity curves; the amplitudes decrease and the γ's become more negative in the outermost layers. Ca II lambda 3933 A has a chromospheric component. (author)

Absorption cross-section measurements of methane, ethane, ethylene and methanol at high temperatures

KAUST Repository

Alrefae, Majed

2014-09-01

Mid-IR absorption cross-sections are measured for methane, ethane, ethylene and methanol over 2800-3400 cm-1 (2.9-3.6 μm) spectral region. Measurements are carried out using a Fourier-Transform-Infrared (FTIR) spectrometer with temperatures ranging 296-1100 K and pressures near atmospheric. As temperature increases, the peak cross-sections decrease but the wings of the bands increase as higher rotational lines appear. Integrated band intensity is also calculated over the measured spectral region and is found to be a very weak function of temperature. The absorption cross-sections of the relatively small fuels studied here show dependence on the bath gas. This effect is investigated by studying the variation of absorption cross-sections at 3.392 μm using a HeNe laser in mixtures of fuel and nitrogen, argon, or helium. Mixtures of fuel with He have the highest value of absorption cross-sections followed by Ar and N2. Molecules with narrow absorption lines, such as methane and methanol, show strong dependence on bath gas than molecules with relatively broader absorption features i.e. ethane and ethylene. © 2014 Elsevier Inc. All rights reserved.

Using dimers to measure biosignatures and atmospheric pressure for terrestrial exoplanets.

Science.gov (United States)

Misra, Amit; Meadows, Victoria; Claire, Mark; Crisp, Dave

2014-02-01

We present a new method to probe atmospheric pressure on Earth-like planets using (O2-O2) dimers in the near-infrared. We also show that dimer features could be the most readily detectable biosignatures for Earth-like atmospheres and may even be detectable in transit transmission with the James Webb Space Telescope (JWST). The absorption by dimers changes more rapidly with pressure and density than that of monomers and can therefore provide additional information about atmospheric pressures. By comparing the absorption strengths of rotational and vibrational features to the absorption strengths of dimer features, we show that in some cases it may be possible to estimate the pressure at the reflecting surface of a planet. This method is demonstrated by using the O2 A band and the 1.06 μm dimer feature, either in transmission or reflected spectra. It works best for planets around M dwarfs with atmospheric pressures between 0.1 and 10 bar and for O2 volume mixing ratios above 50% of Earth's present-day level. Furthermore, unlike observations of Rayleigh scattering, this method can be used at wavelengths longer than 0.6 μm and is therefore potentially applicable, although challenging, to near-term planet characterization missions such as JWST. We also performed detectability studies for JWST transit transmission spectroscopy and found that the 1.06 and 1.27 μm dimer features could be detectable (SNR>3) for an Earth analogue orbiting an M5V star at a distance of 5 pc. The detection of these features could provide a constraint on the atmospheric pressure of an exoplanet and serve as biosignatures for oxygenic photosynthesis. We calculated the required signal-to-noise ratios to detect and characterize O2 monomer and dimer features in direct imaging-reflected spectra and found that signal-to-noise ratios greater than 10 at a spectral resolving power of R=100 would be required.

Miniaturized Laser Heterodyne Radiometer for Measurements of CO2 in the Atmospheric Column

Science.gov (United States)

Wilson, E. L.; Mclinden, M. L.; Miller, J. H.; Allan, G. R.; Lott, L. E.; Melroy, H. R.; Clarke, G. B.

2013-01-01

We have developed a low-cost, miniaturized laser heterodyne radiometer for highly sensitive measurements of carbon dioxide (CO2) in the atmospheric column. In this passive design, sunlight that has undergone absorption by CO2 in the atmosphere is collected and mixed with continuous wave laser light that is step-scanned across the absorption feature centered at 1,573.6 nm. The resulting radio frequency beat signal is collected as a function of laser wavelength, from which the total column mole fraction can be de-convolved. We are expanding this technique to include methane (CH4) and carbon monoxide (CO), and with minor modifications, this technique can be expanded to include species such as water vapor (H2O) and nitrous oxide (N2O).

New Horizons Upper Limits on O{sub 2} in Pluto’s Present Day Atmosphere

Energy Technology Data Exchange (ETDEWEB)

Kammer, J. A.; Gladstone, G. R. [Southwest Research Institute San Antonio, TX 78238 (United States); Stern, S. A.; Young, L. A.; Steffl, A. J.; Olkin, C. B. [Southwest Research Institute Boulder, CO 80302 (United States); Weaver, H. A. [Johns Hopkins Applied Physics Laboratory Laurel, MD 20723 (United States); Ennico, K., E-mail: jkammer@swri.edu [NASA Ames Research Center Moffett Field, CA 94035 (United States); Collaboration: New Horizons Atmospheres and Alice UV Spectrograph Teams

2017-08-01

The surprising discovery by the Rosetta spacecraft of molecular oxygen (O{sub 2}) in the coma of comet 67P/Churyumov–Gerasimenko challenged our understanding of the inventory of this volatile species on and inside bodies from the Kuiper Belt. That discovery motivated our search for oxygen in the atmosphere of Kuiper Belt planet Pluto, because O{sub 2} is volatile even at Pluto’s surface temperatures. During the New Horizons flyby of Pluto in 2015 July, the spacecraft probed the composition of Pluto’s atmosphere using a variety of observations, including an ultraviolet solar occultation observed by the Alice UV spectrograph. As described in these reports, absorption by molecular species in Pluto’s atmosphere yielded detections of N{sub 2}, as well as hydrocarbon species such as CH{sub 4}, C{sub 2}H{sub 2}, C{sub 2}H{sub 4}, and C{sub 2}H{sub 6}. Our work here further examines this data to search for UV absorption from molecular oxygen (O{sub 2}), which has a significant cross-section in the Alice spectrograph bandpass. We find no evidence for O{sub 2} absorption and place an upper limit on the total amount of O{sub 2} in Pluto’s atmosphere as a function of tangent height up to 700 km. In most of the atmosphere, this upper limit in line-of-sight abundance units is ∼3 × 10{sup 15} cm{sup −2}, which, depending on tangent height, corresponds to a mixing ratio of 10{sup −6} to 10{sup −4}, far lower than in comet 67P/CG.

High-Resolution Replication Profiles Define the Stochastic Nature of Genome Replication Initiation and Termination

Directory of Open Access Journals (Sweden)

Michelle Hawkins

2013-11-01

Full Text Available Eukaryotic genome replication is stochastic, and each cell uses a different cohort of replication origins. We demonstrate that interpreting high-resolution Saccharomyces cerevisiae genome replication data with a mathematical model allows quantification of the stochastic nature of genome replication, including the efficiency of each origin and the distribution of termination events. Single-cell measurements support the inferred values for stochastic origin activation time. A strain, in which three origins were inactivated, confirmed that the distribution of termination events is primarily dictated by the stochastic activation time of origins. Cell-to-cell variability in origin activity ensures that termination events are widely distributed across virtually the whole genome. We propose that the heterogeneity in origin usage contributes to genome stability by limiting potentially deleterious events from accumulating at particular loci.

Verification of small-scale water vapor features in VAS imagery using high resolution MAMS imagery. [VISSR Atmospheric Sounder - Multispectral Atmospheric Mapping Sensor

Science.gov (United States)

Menzel, Paul W.; Jedlovec, Gary; Wilson, Gregory

1986-01-01

The Multispectral Atmospheric Mapping Sensor (MAMS), a modification of NASA's Airborne Thematic Mapper, is described, and radiances from the MAMS and the VISSR Atmospheric Sounder (VAS) are compared which were collected simultaneously on May 18, 1985. Thermal emission from the earth atmosphere system in eight visible and three infrared spectral bands (12.3, 11.2 and 6.5 microns) are measured by the MAMS at up to 50 m horizontal resolution, and the infrared bands are similar to three of the VAS infrared bands. Similar radiometric performance was found for the two systems, though the MAMS showed somewhat less attenuation from water vapor than VAS because its spectral bands are shifted to shorter wavelengths away from the absorption band center.

Statistical Models for Sediment/Detritus and Dissolved Absorption Coefficients in Coastal Waters of the Northern Gulf of Mexico

National Research Council Canada - National Science Library

Green, Rebecca E; Gould, Jr., Richard W; Ko, Dong S

2008-01-01

... (CDOM) absorption coefficients from physical hydrographic and atmospheric properties. The models were developed for northern Gulf of Mexico shelf waters using multi-year satellite and physical data...

DNA replication and post-replication repair in U.V.-sensitive mouse neuroblastoma cells

International Nuclear Information System (INIS)

Lavin, M.F.; McCombe, P.; Kidson, C.

1976-01-01

Mouse neuroblastoma cells differentiated when grown in the absence of serum; differentiation was reversed on the addition of serum. Differentiated cells were more sensitive to U.V.-radiation than proliferating cells. Whereas addition of serum to differentiated neuroblastoma cells normally resulted in immediate, synchronous entry into S phase, irradiation just before the addition of serum resulted in a long delay in the onset of DNA replication. During this lag period, incorporated 3 H-thymidine appeared in the light density region of CsCl gradients, reflecting either repair synthesis or abortive replication. Post-replication repair (gap-filling) was found to be present in proliferating cells and at certain times in differentiated cells. It is suggested that the sensitivity of differentiated neuroblastoma cells to U.V.-radiation may have been due to ineffective post-replication repair or to deficiencies in more than one repair mechanism, with reduction in repair capacity beyond a critical threshold. (author)

USING THE ROSSITER–McLAUGHLIN EFFECT TO OBSERVE THE TRANSMISSION SPECTRUM OF EARTH’S ATMOSPHERE

Energy Technology Data Exchange (ETDEWEB)

Yan, F.; Zhao, G. [Key Laboratory of Optical Astronomy, National Astronomical Observatories, Chinese Academy of Sciences, 20A Datun Road, Chaoyang District, 100012 Beijing (China); Fosbury, R. A. E.; Petr-Gotzens, M. G. [European Southern Observatory, Karl-Schwarzschild-Str. 2, D-85748 Garching bei München (Germany); Pallé, E., E-mail: feiy@nao.cas.cn, E-mail: gzhao@nao.cas.cn [Instituto de Astrofísica de Canarias, C/vía Láctea, s/n, E-38205 La Laguna, Tenerife (Spain)

2015-06-20

Due to stellar rotation, the observed radial velocity of a star varies during the transit of a planet across its surface, a phenomenon known as the Rossiter–McLaughlin (RM) effect. The amplitude of the RM effect is related to the radius of the planet which, because of differential absorption in the planetary atmosphere, depends on wavelength. Therefore, the wavelength-dependent RM effect can be used to probe the planetary atmosphere. We measure for the first time the RM effect of the Earth transiting the Sun using a lunar eclipse observed with the ESO High Accuracy Radial velocity Planet Searcher spectrograph. We analyze the observed RM effect at different wavelengths to obtain the transmission spectrum of the Earth’s atmosphere after the correction of the solar limb-darkening and the convective blueshift. The ozone Chappuis band absorption as well as the Rayleigh scattering features are clearly detectable with this technique. Our observation demonstrates that the RM effect can be an effective technique for exoplanet atmosphere characterization. Its particular asset is that photometric reference stars are not required, circumventing the principal challenge for transmission spectroscopy studies of exoplanet atmospheres using large ground-based telescopes.

The thermal structure of Titan's atmosphere

Science.gov (United States)

Mckay, Christopher P.; Pollack, James B.; Courtin, Regis

1989-01-01

The present radiative-convective model of the Titan atmosphere thermal structure obtains the solar and IR radiation in a series of spectral intervals with vertical resolution. Haze properties have been determined with a microphysics model encompassing a minimum of free parameters. It is determined that gas and haze opacity alone, using temperatures established by Voyager observations, yields a model that is within a few percent of the radiative convective balance throughout the Titan atmosphere. Model calculations of the surface temperature are generally colder than the observed value by 5-10 K; better agreement is obtained through adjustment of the model parameters. Sunlight absorption by stratospheric haze and pressure-induced gas opacity in the IR are the most important thermal structure-controlling factors.

Gas absorption and discharge behaviors of lead-lithium

International Nuclear Information System (INIS)

Sakabe, Toshiro; Yokomine, Takehiko; Kunugi, Tomoaki; Kawara, Zensaku; Ueki, Yoshitaka; Tanaka, Teruya

2014-01-01

Highlights: • The absorption of argon in the lead-lithium is comparable with that of helium even at the solid state. • For the molten state of lead-lithium, the absorption of argon could be larger than that of helium. • It is observed that the argon tends to desorb when the phase change of lead-lithium occurs. • It is observed from the TPD-MS analysis that the argon tends to desorb when the phase change of lead-lithium occurs. - Abstract: The absorption of rare gas in the lead-lithium has been quite low and the gas is used as a cover-gas to control the environment of experiment. In our previous thermo-fluid experiment by using lithium-lead, it was found the cover gas pressure enclosed in the very leak tight container of lithium-lead was decreased with time, that is, the gas-absorption of the solid lithium-lead occurred at room temperature under atmospheric pressure. The variation of pressure exceeded the retention of argon in lead-lithium which is expected by the published data. Therefore, we aim to confirm those phenomena under well-controlled experimental condition by using argon, nitrogen and helium. According to the results of gas exposure tests, the absorption of argon in the lead-lithium is comparable with that of helium even at the solid state. For the molten state of lead-lithium, the absorption of argon could be larger than that of helium. It is also observed from the TPD-MS analysis that the argon tends to desorb when the phase change of lead-lithium occurs. If the retention of argon in the lead-lithium cannot be ignored, the problem of Ar-41 activity should be taken into consideration as well as the problem of argon bubble in the lead-lithium

DATABASE REPLICATION IN HETEROGENOUS PLATFORM

OpenAIRE

Hendro Nindito; Evaristus Didik Madyatmadja; Albert Verasius Dian Sano

2014-01-01

The application of diverse database technologies in enterprises today is increasingly a common practice. To provide high availability and survavibality of real-time information, a database replication technology that has capability to replicate databases under heterogenous platforms is required. The purpose of this research is to find the technology with such capability. In this research, the data source is stored in MSSQL database server running on Windows. The data will be replicated to MyS...

Overcoming natural replication barriers: differential helicase requirements.

Science.gov (United States)

Anand, Ranjith P; Shah, Kartik A; Niu, Hengyao; Sung, Patrick; Mirkin, Sergei M; Freudenreich, Catherine H

2012-02-01

DNA sequences that form secondary structures or bind protein complexes are known barriers to replication and potential inducers of genome instability. In order to determine which helicases facilitate DNA replication across these barriers, we analyzed fork progression through them in wild-type and mutant yeast cells, using 2-dimensional gel-electrophoretic analysis of the replication intermediates. We show that the Srs2 protein facilitates replication of hairpin-forming CGG/CCG repeats and prevents chromosome fragility at the repeat, whereas it does not affect replication of G-quadruplex forming sequences or a protein-bound repeat. Srs2 helicase activity is required for hairpin unwinding and fork progression. Also, the PCNA binding domain of Srs2 is required for its in vivo role of replication through hairpins. In contrast, the absence of Sgs1 or Pif1 helicases did not inhibit replication through structural barriers, though Pif1 did facilitate replication of a telomeric protein barrier. Interestingly, replication through a protein barrier but not a DNA structure barrier was modulated by nucleotide pool levels, illuminating a different mechanism by which cells can regulate fork progression through protein-mediated stall sites. Our analyses reveal fundamental differences in the replication of DNA structural versus protein barriers, with Srs2 helicase activity exclusively required for fork progression through hairpin structures.

Exploiting replicative stress to treat cancer

DEFF Research Database (Denmark)

Dobbelstein, Matthias; Sørensen, Claus Storgaard

2015-01-01

DNA replication in cancer cells is accompanied by stalling and collapse of the replication fork and signalling in response to DNA damage and/or premature mitosis; these processes are collectively known as 'replicative stress'. Progress is being made to increase our understanding of the mechanisms...

Contribution of water dimer absorption to the millimeter and far infrared atmospheric water continuum

Science.gov (United States)

Scribano, Yohann; Leforestier, Claude

2007-06-01

We present a rigorous calculation of the contribution of water dimers to the absorption coefficient α(ν¯,T ) in the millimeter and far infrared domains, over a wide range (276-310K) of temperatures. This calculation relies on the explicit consideration of all possible transitions within the entire rovibrational bound state manifold of the dimer. The water dimer is described by the flexible 12-dimensional potential energy surface previously fitted to far IR transitions [C. Leforestier et al., J. Chem. Phys. 117, 8710 (2002)], and which was recently further validated by the good agreement obtained for the calculated equilibrium constant Kp(T) with experimental data [Y. Scribano et al., J. Phys. Chem. A. 110, 5411 (2006)]. Transition dipole matrix elements were computed between all rovibrational states up to an excitation energy of 750cm-1, and J =K=5 rotational quantum numbers. It was shown by explicit calculations that these matrix elements could be extrapolated to much higher J values (J=30). Transitions to vibrational states located higher in energy were obtained from interpolation of computed matrix elements between a set of initial states spanning the 0-750cm-1 range and all vibrational states up to the dissociation limit (˜1200cm-1). We compare our calculations with available experimental measurements of the water continuum absorption in the considered range. It appears that water dimers account for an important fraction of the observed continuum absorption in the millimeter region (0-10cm-1). As frequency increases, their relative contribution decreases, becoming small (˜3%) at the highest frequency considered ν¯=944cm-1.

Chromatin maturation depends on continued DNA-replication

International Nuclear Information System (INIS)

Schlaeger, E.J.; Puelm, W.; Knippers, R.

1983-01-01

The structure of [ 3 H]thymidine pulse-labeled chromatin in lymphocytes differs from that of non-replicating chromatin by several operational criteria which are related to the higher nuclease sensitivity of replicating chromatin. These structural features of replicating chromatin rapidly disappear when the [ 3 H]thymidine pulse is followed by a chase in the presence of an excess of non-radioactive thymidine. However, when the rate of DNA replication is reduced, as in cycloheximide-treated lymphocytes, chromatin maturation is retarded. No chromatin maturation is observed when nuclei from pulse-labeled lymphocytes are incubated in vitro in the absence of DNA precursors. In contrast, when these nuclei are incubated under conditions known to be optimal for DNA replication, the structure of replicating chromatin is efficiently converted to that of 'mature', non-replicating chromatin. The authors conclude that the properties of nascent DNA and/or the distance from the replication fork are important factors in chromatin maturation. (Auth.)

Polythiophene films obtained by polymerization under atmospheric pressure plasma conditions

Energy Technology Data Exchange (ETDEWEB)

Teslaru, T.; Topala, I., E-mail: ionut.topala@uaic.ro; Dobromir, M.; Pohoata, V.; Curecheriu, L.; Dumitrascu, N.

2016-02-01

The present work describes the experimental arrangement used to initiate polymerization reactions of thiophene monomer based on a dielectric barrier discharge with plane – parallel geometry, working at atmospheric pressure in argon, in turn to obtain conductive polymeric films for different applications. The resulting plasma polymerized polythiophene (pPTh) film was characterized by FT-IR, UV–Vis, XPS spectroscopy, AFM and contact angle measurements. Characterization of pPTh films showed a higher hydrophobic character and roughness, as compared with films obtained by chemical methods, and the thickness is depending on polymerization duration. Also it can conclude that our samples represent oxidised state of pPTh. As a possible application, it analysed in situ the iodine absorption phenomenon in the pPTh matrix and its time evolution by UV–Vis spectroscopy. The presence of iodine 3d{sub 5/2} and 3d{sub 3/2} peaks in the pPTh sample after absorption was identified by XPS spectroscopy. The hydrophobic pPTh film is transformed in a super hydrophilic film after absorption of iodine vapors. - Highlights: • We obtained polythiophene films (pPTh) by atmospheric pressure plasma technique. • The pPTh films showed a hydrophobic character and conducting properties. • The pPTh films were used as sensor for iodine vapors in biological environment.

The Escherichia coli Tus-Ter replication fork barrier causes site-specific DNA replication perturbation in yeast

DEFF Research Database (Denmark)

Larsen, Nicolai B; Sass, Ehud; Suski, Catherine

2014-01-01

Replication fork (RF) pausing occurs at both 'programmed' sites and non-physiological barriers (for example, DNA adducts). Programmed RF pausing is required for site-specific DNA replication termination in Escherichia coli, and this process requires the binding of the polar terminator protein, Tus...... as a versatile, site-specific, heterologous DNA replication-perturbing system, with a variety of potential applications....

[Study on lead absorption in pumpkin by atomic absorption spectrophotometry].

Science.gov (United States)

Li, Zhen-Xia; Sun, Yong-Dong; Chen, Bi-Hua; Li, Xin-Zheng

2008-07-01

A study was carried out on the characteristic of lead absorption in pumpkin via atomic absorption spectrophotometer. The results showed that lead absorption amount in pumpkin increased with time, but the absorption rate decreased with time; And the lead absorption amount reached the peak in pH 7. Lead and cadmium have similar characteristic of absorption in pumpkin.

Enzymatic recognition of DNA replication origins

International Nuclear Information System (INIS)

Stayton, M.M.; Bertsch, L.; Biswas, S.

1983-01-01

In this paper we discuss the process of recognition of the complementary-strand origin with emphasis on RNA polymerase action in priming M13 DNA replication, the role of primase in G4 DNA replication, and the function of protein n, a priming protein, during primosome assembly. These phage systems do not require several of the bacterial DNA replication enzymes, particularly those involved in the regulation of chromosome copy number of the initiatiion of replication of duplex DNA. 51 references, 13 figures, 1 table

Surface Microstructure Replication in Injection Moulding

DEFF Research Database (Denmark)

Hansen, Hans Nørgaard; Arlø, Uffe Rolf

2005-01-01

topography is transcribed onto the plastic part through complex mechanisms. This replication however, is not perfect, and the replication quality depends on the plastic material properties, the topography itself, and the process conditions. This paper describes and discusses an investigation of injection...... moulding of surface microstructures. Emphasis is put on the ability to replicate surface microstructures under normal injection moulding conditions, notably with low cost materials at low mould temperatures. The replication of surface microstructures in injection moulding has been explored...... for Polypropylene at low mould temperatures. The process conditions were varied over the recommended process window for the material. The geometry of the obtained structures was analyzed. Evidence suggests that step height replication quality depends linearly on structure width in a certain range. Further...

Relative spectral absorption of solar radiation by water vapor and cloud droplets

Science.gov (United States)

Davies, R.; Ridgway, W. L.

1983-01-01

A moderate (20/cm) spectral resolution model which accounts for both the highly variable spectral transmission of solar radiation through water vapor within and above cloud, as well as the more slowly varying features of absorption and anisotropic multiple scattering by the cloud droplets, is presented. Results from this model as applied to the case of a typical 1 km thick stratus cloud in a standard atmosphere, with cloud top altitude of 2 km and overhead sun, are discussed, showing the relative importance of water vapor above the cloud, water vapor within the cloud, and cloud droplets on the spectral absorption of solar radiation.

Replication Protein A (RPA) Phosphorylation Prevents RPA Association with Replication Centers

OpenAIRE

Vassin, Vitaly M.; Wold, Marc S.; Borowiec, James A.

2004-01-01

Mammalian replication protein A (RPA) undergoes DNA damage-dependent phosphorylation at numerous sites on the N terminus of the RPA2 subunit. To understand the functional significance of RPA phosphorylation, we expressed RPA2 variants in which the phosphorylation sites were converted to aspartate (RPA2D) or alanine (RPA2A). Although RPA2D was incorporated into RPA heterotrimers and supported simian virus 40 DNA replication in vitro, the RPA2D mutant was selectively unable to associate with re...

On the Atmospheric Correction of Antarctic Airborne Hyperspectral Data

Directory of Open Access Journals (Sweden)

Martin Black

2014-05-01

Full Text Available The first airborne hyperspectral campaign in the Antarctic Peninsula region was carried out by the British Antarctic Survey and partners in February 2011. This paper presents an insight into the applicability of currently available radiative transfer modelling and atmospheric correction techniques for processing airborne hyperspectral data in this unique coastal Antarctic environment. Results from the Atmospheric and Topographic Correction version 4 (ATCOR-4 package reveal absolute reflectance values somewhat in line with laboratory measured spectra, with Root Mean Square Error (RMSE values of 5% in the visible near infrared (0.4–1 µm and 8% in the shortwave infrared (1–2.5 µm. Residual noise remains present due to the absorption by atmospheric gases and aerosols, but certain parts of the spectrum match laboratory measured features very well. This study demonstrates that commercially available packages for carrying out atmospheric correction are capable of correcting airborne hyperspectral data in the challenging environment present in Antarctica. However, it is anticipated that future results from atmospheric correction could be improved by measuring in situ atmospheric data to generate atmospheric profiles and aerosol models, or with the use of multiple ground targets for calibration and validation.

Utilization of synchrotron radiation in analytical chemistry. Soft X-ray emission and absorption spectroscopy

International Nuclear Information System (INIS)

Muramatsu, Yasuji

2015-01-01

Synchrotron soft X-ray spectroscopy includes three major types of spectroscopy such as X-ray absorption spectroscopy (XAS), X-ray emission spectroscopy (XES), and X-ray photoelectron spectroscopy (XPS). This paper takes up XAS and XES of soft X-rays, and briefly describes the principle. XAS is roughly classified into XANES (X-ray absorption near-edge structure) and EXAFS (extended X-ray absorption fine structure), and XANES is mainly used in the analysis based on XAS of soft X-rays. As the examples of the latest soft X-ray analyses, the following are introduced: (1) bandgap of boron implantation diamond and the local structure of boron, (2) catalytic sites in solid fuel cell carbon electrode, and (3) soft X-ray analysis under atmospheric pressure. (A.O.)

Variance Swap Replication: Discrete or Continuous?

Directory of Open Access Journals (Sweden)

Fabien Le Floc’h

2018-02-01

Full Text Available The popular replication formula to price variance swaps assumes continuity of traded option strikes. In practice, however, there is only a discrete set of option strikes traded on the market. We present here different discrete replication strategies and explain why the continuous replication price is more relevant.

Neutron star model atmospheres - a comparison with MXB 1728-34

International Nuclear Information System (INIS)

Foster, A.J.; Fabian, A.C.; Ross, R.R.

1986-01-01

A detailed comparison between the X-ray spectra calculated for model atmospheres in neutron stars and the observed spectra of X-ray bursts is presented. Comptonization and free - free absorption and emission processes are taken into account, as are the effects of iron in its last three states of ionization. Two types of model are formulated: (i) a constant density atmosphere and (ii) an atmosphere in approximate hydrostatic equilibrium. The models have been fitted to X-ray burst data obtained with EXOSAT from the source MXB 1728-34. It is possible simultaneously to fit a sub-Eddington burst luminosity, a neutron star radius consistent with current equations of state, and a distance in agreement with optical estimates. (author)

Volume concentration of 41 elements in ground level of atmosphere in Bratislava

International Nuclear Information System (INIS)

Florek, M.; Meresova, J.; Holy, K.; Sykora, I.; Frontasyeva, M. V.; Pavlov, S. S.

2006-01-01

The concentrations of 41 chemical elements (heavy metals, rare earths, and actinides) were determined in atmospheric aerosol using nuclear and related analytical techniques. The sampling location was in Bratislava (Slovak Republic). The main goal of this study is the quantification of the atmospheric pollution and its trend. The elemental content in filters was measured using instrumental neutron activation analysis at IBR-2 reactor in JINR Dubna and by atomic absorption spectrometry in Bratislava. The obtained results confirmed the decreasing trend of pollution by most of the heavy metals in Bratislava atmosphere, and they are compared with the contents of pollutants in atmosphere of other cities. We determined also the composition of clear filter materials. (authors)

A compact, high resolution Michelson interferometer for atmospheric spectroscopy in the near ultraviolet

Science.gov (United States)

Sander, Stanley P.; Cageao, Richard P.; Friedl, Randall R.

1993-01-01

A new, compact Fourier Transform Michelson interferometer (FTUV) with an apodized resolving power greater than 300,000 at 300 nm, high throughput and wide spectral coverage has been developed. The objectives include atmospheric spectroscopy (direct solar absorption and solar scattering) and laboratory spectroscopy of transient species. In this paper, we will briefly describe the prototype FTUV instrument and the results of preliminary laboratory investigations of OH and ClO spectra in emission and absorption.

Study of atmospheric tritium transfers in lettuce: kinetic study, equilibrium and organic incorporation during a continuous atmospheric exposure

International Nuclear Information System (INIS)

Boyer, C.

2009-01-01

This thesis has explored the mechanisms of tritium 'absorption and incorporation in a human-consumed plant, lettuce (Lactuca sativa L.), due to atmospheric exposure. Foliar uptake appears to play a key role in absorption of tritium as tissue free water tritium. Whatever the development stage and the light conditions, the specific activity in tissue free water reaches that of water vapour in air in several hours. The specific activity ratio is then about 0, 4. The time to reach equilibrium in soil is over 24 hours in most cases: the specific activity ratio ranges then 0, 01 to 0, 26. Incorporation rate of tissue free water tritium as organically-bound tritium has been estimated to 0, 13 to 0, 16 % h-l in average over the growing period of the plant, but marked variations are observed during growth. In particular, a significant increase appeared at the exponential growth stage. Deposition and diffusion of tritium in soil lead to significant OBT activities in soil. Results globally indicate equilibrium between the different environmental compartments (air, soil, plant). However, some experiments have revealed high OBT concentrations regarding atmospheric level exposure and ask for a possible phenomenon of local tritium accumulation in OBT for particular conditions of exposure. (author) [fr

Effects of 3-D clouds on atmospheric transmission of solar radiation: Cloud type dependencies inferred from A-train satellite data

Science.gov (United States)

Ham, Seung-Hee; Kato, Seiji; Barker, Howard W.; Rose, Fred G.; Sun-Mack, Sunny

2014-01-01

Three-dimensional (3-D) effects on broadband shortwave top of atmosphere (TOA) nadir radiance, atmospheric absorption, and surface irradiance are examined using 3-D cloud fields obtained from one hour's worth of A-train satellite observations and one-dimensional (1-D) independent column approximation (ICA) and full 3-D radiative transfer simulations. The 3-D minus ICA differences in TOA nadir radiance multiplied by π, atmospheric absorption, and surface downwelling irradiance, denoted as πΔI, ΔA, and ΔT, respectively, are analyzed by cloud type. At the 1 km pixel scale, πΔI, ΔA, and ΔT exhibit poor spatial correlation. Once averaged with a moving window, however, better linear relationships among πΔI, ΔA, and ΔT emerge, especially for moving windows larger than 5 km and large θ0. While cloud properties and solar geometry are shown to influence the relationships amongst πΔI, ΔA, and ΔT, once they are separated by cloud type, their linear relationships become much stronger. This suggests that ICA biases in surface irradiance and atmospheric absorption can be approximated based on ICA biases in nadir radiance as a function of cloud type.

Rectenna related atmospheric effects

Science.gov (United States)

Lee, J.

1980-01-01

Possible meteorological effects arising from the existence and operations of a solar power satellite (SPS) system rectenna are examined. Analysis and model simulations in some chosen site situations and meteorological conditions indicate that the meteorological effects of the construction and operation of a rectenna are small, particularly outside the boundary of the structure. From weather and climate points of view, installation of an SPS rectenna seems likely to have effects comparable with those due to other nonindustrial land use changes covering the same area. The absorption and scattering of microwave radiation in the troposphere would have negligible atmospheric effects.

Surface microstructure replication in injection molding

DEFF Research Database (Denmark)

Theilade, Uffe Arlø; Hansen, Hans Nørgaard

2006-01-01

topography is transcribed onto the plastic part through complex mechanisms. This replication, however, is not perfect, and the replication quality depends on the plastic material properties, the topography itself, and the process conditions. This paper describes and discusses an investigation of injection...... molding of surface microstructures. The fundamental problem of surface microstructure replication has been studied. The research is based on specific microstructures as found in lab-on-a-chip products and on rough surfaces generated from EDM (electro discharge machining) mold cavities. Emphasis is put...... on the ability to replicate surface microstructures under normal injection-molding conditions, i.e., with commodity materials within typical process windows. It was found that within typical process windows the replication quality depends significantly on several process parameters, and especially the mold...

The influence of water vapor on atmospheric exchange measurements with an ICOS* based Laser absorption analyzer

Science.gov (United States)

Bunk, Rüdiger; Quan, Zhi; Wandel, Matthias; Yi, Zhigang; Bozem, Heiko; Kesselmeier, Jürgen

2014-05-01

Carbonyl sulfide and carbon monoxide are both atmospheric trace gases of high interest. Recent advances in the field of spectroscopy have enabled instruments that measure the concentration of the above and other trace gases very fast and with good precision. Increasing the effective path length by reflecting the light between two mirrors in a cavity, these instruments reach impressive sensitivities. Often it is possible to measure the concentration of more than one trace gas at the same time. The OCS/CO2 Analyzer by LGR (Los Gatos Research, Inc.) measures the concentration of water vapor [H2O], carbonyl sulfide [COS], carbon dioxide [CO2] and carbon monoxide [CO] simultaneously. For that the cavity is saturated with light, than the attenuation of light is measured as in standard absorption spectroscopy. The instrument proved to be very fast with good precision and to be able to detect even very low concentrations, especially for COS (as low as 30ppt in the case of COS). However, we observed a rather strong cross sensitivity to water vapor. Altering the water vapor content of the sampled air with two different methods led to a change in the perceived concentration of COS, CO and CO2. This proved especially problematic for enclosure (cuvette) measurements, where the concentrations of one of the above species in an empty cuvette are compared to the concentration of another cuvette containing a plant whose exchange of trace gases with the atmosphere is of interest. There, the plants transpiration leads to a large difference in water vapor content between the cuvettes and that in turn produces artifacts in the concentration differences between the cuvettes for the other above mentioned trace gases. For CO, simultaneous measurement with a UV-Emission Analyzer (AL 5002, Aerolaser) and the COS/CO Analyzer showed good agreement of perceived concentrations as long as the sample gas was dry and an increasing difference in perceived concentration when the sample gas was

Observation of Atmospheric Constituents From Space

Science.gov (United States)

Burrows, J. P.

Remote sensing of the atmosphere from space is a growing research field. Surprisingly but for good physical reasons, the mesosphere and stratosphere are easier to probe from space than the troposphere. GOME (Global Ozone Monitoring Experiment) and SCIAMACHY (Scanning Imaging absorption spectroMeter for Atmospheric CHartographY) are related European instruments, which were proposed and been designed to measure atmospheric constituents (gases, aerosols and clouds) by passive remote sensing of the up-welling solar radiation leaving atmosphere. GOME is a smaller version of SCIAMACHY and was launched as part of the core payload of the second European research satellite (ERS-2) on the 20th April 1995. GOME comprises four spectral channels and measures simultaneously the earthshine radiance or solar extra terrestrial irradiance between 240 and 790 nm. Inversion of GOME measurements using the DOAS (Differential Optical Absorption Spectroscopy) yields the total column of trace gases (e.g. O3, NO2, HCHO, BrO and OClO). Application of the FURM (Full Retrieval Method) enables the profiles of O3 to be retrieved. One of the important achievements of GOME has been the separation of tropopsheirc columns of trace gases using TEM (Tropospheric Excess Method). SCIAMACHY has been developed as Germa n, Dutch and Belgian contribution to ENVISAT. It has significantly enhanced capability compared to GOME, measuring a larger spectral range, 220-2380 nm, and observing in alternate nadir and limb modes as well as solar and lunar occultation. ENVISAT is to be launched into a sun synchronous polar orbit, having an equator crossing time of 10.00 a.m. at the beginning of March 2002. SCIAMACHY is thereby able to measure many more species and vertical profiles than GOME. This facilitates improved tropospheric retrievals. Finally GeoTROPE (Geostationary TROPospheric Explorer) is a new mission, which is proposed for launch within the ESA Earth Explorer Opportunity Mission. It comprises two national

Pulsed Airborne Lidar Measurements of C02 Column Absorption

Science.gov (United States)

Abshire, James B.; Riris, Haris; Allan, Graham R.; Weaver, Clark J.; Mao, Jianping; Sun, Xiaoli; Hasselbrack, William E.; Rodriquez, Michael; Browell, Edward V.

2011-01-01

We report on airborne lidar measurements of atmospheric CO2 column density for an approach being developed as a candidate for NASA's ASCENDS mission. It uses a pulsed dual-wavelength lidar measurement based on the integrated path differential absorption (IPDA) technique. We demonstrated the approach using the CO2 measurement from aircraft in July and August 2009 over four locations. The results show clear CO2 line shape and absorption signals, which follow the expected changes with aircraft altitude from 3 to 13 km. The 2009 measurements have been analyzed in detail and the results show approx.1 ppm random errors for 8-10 km altitudes and approx.30 sec averaging times. Airborne measurements were also made in 2010 with stronger signals and initial analysis shows approx. 0.3 ppm random errors for 80 sec averaging times for measurements at altitudes> 6 km.

ABSORPTION, SCATTERING, ATTENUATION COEFFICIENTS and Other Data from NOAA-11 SATELLITE from 19930101 to 19931231 (NCEI Accession 9300064)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Sea surface topography, absorption, scattering, attenuation coefficients and other data in this accession was collected from NOAA-11 Advanced Very High...

Activation of human herpesvirus replication by apoptosis.

Science.gov (United States)

Prasad, Alka; Remick, Jill; Zeichner, Steven L

2013-10-01

A central feature of herpesvirus biology is the ability of herpesviruses to remain latent within host cells. Classically, exposure to inducing agents, like activating cytokines or phorbol esters that stimulate host cell signal transduction events, and epigenetic agents (e.g., butyrate) was thought to end latency. We recently showed that Kaposi's sarcoma-associated herpesvirus (KSHV, or human herpesvirus-8 [HHV-8]) has another, alternative emergency escape replication pathway that is triggered when KSHV's host cell undergoes apoptosis, characterized by the lack of a requirement for the replication and transcription activator (RTA) protein, accelerated late gene kinetics, and production of virus with decreased infectivity. Caspase-3 is necessary and sufficient to initiate the alternative replication program. HSV-1 was also recently shown to initiate replication in response to host cell apoptosis. These observations suggested that an alternative apoptosis-triggered replication program might be a general feature of herpesvirus biology and that apoptosis-initiated herpesvirus replication may have clinical implications, particularly for herpesviruses that almost universally infect humans. To explore whether an alternative apoptosis-initiated replication program is a common feature of herpesvirus biology, we studied cell lines latently infected with Epstein-Barr virus/HHV-4, HHV-6A, HHV-6B, HHV-7, and KSHV. We found that apoptosis triggers replication for each HHV studied, with caspase-3 being necessary and sufficient for HHV replication. An alternative apoptosis-initiated replication program appears to be a common feature of HHV biology. We also found that commonly used cytotoxic chemotherapeutic agents activate HHV replication, which suggests that treatments that promote apoptosis may lead to activation of latent herpesviruses, with potential clinical significance.

NIR-driven Moist Upper Atmospheres of Synchronously Rotating Temperate Terrestrial Exoplanets

International Nuclear Information System (INIS)

Fujii, Yuka; Del Genio, Anthony D.; Amundsen, David S.

2017-01-01

H 2 O is a key molecule in characterizing atmospheres of temperate terrestrial planets, and observations of transmission spectra are expected to play a primary role in detecting its signatures in the near future. The detectability of H 2 O absorption features in transmission spectra depends on the abundance of water vapor in the upper part of the atmosphere. We study the three-dimensional distribution of atmospheric H 2 O for synchronously rotating Earth-sized aquaplanets using the general circulation model (GCM) ROCKE-3D, and examine the effects of total incident flux and stellar spectral type. We observe a more gentle increase of the water vapor mixing ratio in response to increased incident flux than one-dimensional models suggest, in qualitative agreement with the climate-stabilizing effect of clouds around the substellar point previously observed in GCMs applied to synchronously rotating planets. However, the water vapor mixing ratio in the upper atmosphere starts to increase while the surface temperature is still moderate. This is explained by the circulation in the upper atmosphere being driven by the radiative heating due to absorption by water vapor and cloud particles, causing efficient vertical transport of water vapor. Consistently, the water vapor mixing ratio is found to be well-correlated with the near-infrared portion of the incident flux. We also simulate transmission spectra based on the GCM outputs, and show that for the more highly irradiated planets, the H 2 O signatures may be strengthened by a factor of a few, loosening the observational demands for a H 2 O detection.

The detailed balance requirement and general empirical formalisms for continuum absorption

Science.gov (United States)

Ma, Q.; Tipping, R. H.

1994-01-01

Two general empirical formalisms are presented for the spectral density which take into account the deviations from the Lorentz line shape in the wing regions of resonance lines. These formalisms satisfy the detailed balance requirement. Empirical line shape functions, which are essential to provide the continuum absorption at different temperatures in various frequency regions for atmospheric transmission codes, can be obtained by fitting to experimental data.

Particle pollution changes the atmospheric circulation

International Nuclear Information System (INIS)

Kristjansson, Jon Egill; Iversen, Trond; Kirkevaag, Alf; Seland, Oeyvind; Debernard, Jens; Roeed, Lars Petter

2002-01-01

Industrial emissions and combustion of fossil fuels create large amounts of sulfate- and carbon containing soot particles. These mix with natural particles to change the natural aerosols. Such anthropogenic changes in the aerosols may have a great impact on the climate of the earth. Altered properties of the aerosols may change the atmosphere's absorption and reflection of solar radiation and contribute to heating or cooling. This is the direct effect. Changes in the properties of aerosols may also affect the number and size of recently formed cloud droplets. This may change the ability of the clouds to reflect solar radiation and to produce precipitation. This is the indirect effect. Recent research at the University of Oslo shows that anthropogenic particles significantly change the atmospheric circulation, in particular in the tropics, but also at European latitudes

An atmospheric vulnerability assessment framework for environment management and protection based on CAMx.

Science.gov (United States)

Zhang, Yang; Shen, Jing; Li, Yu

2018-02-01

This paper presents an atmospheric vulnerability assessment framework based on CAMx that should be helpful to assess potential impacts of changes in human, atmospheric environment, and social economic elements of atmospheric vulnerability. It is also a useful and effective tool that can provide policy-guidance for environmental protection and management to reduce the atmospheric vulnerability. The developed framework was applied to evaluate the atmospheric environment vulnerability of 13 cities in the Beijing-Tianjin-Hebei (BTH) region for verification. The results indicated that regional disparity of the atmospheric vulnerability existed in the study site. More specifically, the central and southern regions show more atmospheric environment vulnerability than the northern regions. The impact factors of atmospheric environment vulnerability in the BTH region mainly derived from increasing population press, frequently unfavorable meteorological conditions, extensive economic growth of secondary industry, increased environmental pollution, and accelerating population aging. The framework shown in this paper is an interpretative and heuristic tool for a better understanding of atmospheric vulnerability. This framework can also be replicated at different spatial and temporal scales using context-specific datasets to straightly support environmental managers with decision-making. Copyright © 2017 Elsevier Ltd. All rights reserved.

Evolution of Replication Machines

Science.gov (United States)

Yao, Nina Y.; O'Donnell, Mike E.

2016-01-01

The machines that decode and regulate genetic information require the translation, transcription and replication pathways essential to all living cells. Thus, it might be expected that all cells share the same basic machinery for these pathways that were inherited from the primordial ancestor cell from which they evolved. A clear example of this is found in the translation machinery that converts RNA sequence to protein. The translation process requires numerous structural and catalytic RNAs and proteins, the central factors of which are homologous in all three domains of life, bacteria, archaea and eukarya. Likewise, the central actor in transcription, RNA polymerase, shows homology among the catalytic subunits in bacteria, archaea and eukarya. In contrast, while some “gears” of the genome replication machinery are homologous in all domains of life, most components of the replication machine appear to be unrelated between bacteria and those of archaea and eukarya. This review will compare and contrast the central proteins of the “replisome” machines that duplicate DNA in bacteria, archaea and eukarya, with an eye to understanding the issues surrounding the evolution of the DNA replication apparatus. PMID:27160337

DNA replication origins—where do we begin?

Science.gov (United States)

Prioleau, Marie-Noëlle; MacAlpine, David M.

2016-01-01

For more than three decades, investigators have sought to identify the precise locations where DNA replication initiates in mammalian genomes. The development of molecular and biochemical approaches to identify start sites of DNA replication (origins) based on the presence of defining and characteristic replication intermediates at specific loci led to the identification of only a handful of mammalian replication origins. The limited number of identified origins prevented a comprehensive and exhaustive search for conserved genomic features that were capable of specifying origins of DNA replication. More recently, the adaptation of origin-mapping assays to genome-wide approaches has led to the identification of tens of thousands of replication origins throughout mammalian genomes, providing an unprecedented opportunity to identify both genetic and epigenetic features that define and regulate their distribution and utilization. Here we summarize recent advances in our understanding of how primary sequence, chromatin environment, and nuclear architecture contribute to the dynamic selection and activation of replication origins across diverse cell types and developmental stages. PMID:27542827

Some results of radiative balance in atmospheres with clouds

International Nuclear Information System (INIS)

Anduckia Avila, Juan Carlos; Pelkowski, Joaquin

2000-01-01

Vertical profiles of temperature for a semi grey three-Layer atmosphere are established using a radiative equilibrium condition. The approximation contains the greenhouse effect, scattering by clouds in one direction and isotropic diffuse reflection at the planet's surface. Absorption of short- wave radiation is also considered in one of the three layers. Similar models are contained therein

Quantifying black carbon light absorption enhancement with a novel statistical approach

Directory of Open Access Journals (Sweden)

C. Wu

2018-01-01

Full Text Available Black carbon (BC particles in the atmosphere can absorb more light when coated by non-absorbing or weakly absorbing materials during atmospheric aging, due to the lensing effect. In this study, the light absorption enhancement factor, Eabs, was quantified using a 1-year measurement of mass absorption efficiency (MAE in the Pearl River Delta region (PRD. A new approach for calculating primary MAE (MAEp, the key for Eabs estimation, is demonstrated using the minimum R squared (MRS method, exploring the inherent source independency between BC and its coating materials. A unique feature of Eabs estimation with the MRS approach is its insensitivity to systematic biases in elemental carbon (EC and σabs measurements. The annual average Eabs550 is found to be 1.50 ± 0.48 (±1 SD in the PRD region, exhibiting a clear seasonal pattern with higher values in summer and lower in winter. Elevated Eabs in the summertime is likely associated with aged air masses, predominantly of marine origin, along with long-range transport of biomass-burning-influenced air masses from Southeast Asia. Core–shell Mie simulations along with measured Eabs and absorption Ångström exponent (AAE constraints suggest that in the PRD, the coating materials are unlikely to be dominated by brown carbon and the coating thickness is higher in the rainy season than in the dry season.

On the nature of absorption features toward nearby stars

Science.gov (United States)

Kohl, S.; Czesla, S.; Schmitt, J. H. M. M.

2016-06-01

observed spectra are instead attributable to inaccuracies in the stellar atmospheric modeling than to DIB absorption. The spectra are available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/591/A20

Tropospheric and total ozone columns over Paris (France measured using medium-resolution ground-based solar-absorption Fourier-transform infrared spectroscopy

Directory of Open Access Journals (Sweden)

C. Viatte

2011-10-01

Full Text Available Ground-based Fourier-transform infrared (FTIR solar absorption spectroscopy is a powerful remote sensing technique providing information on the vertical distribution of various atmospheric constituents. This work presents the first evaluation of a mid-resolution ground-based FTIR to measure tropospheric ozone, independently of stratospheric ozone. This is demonstrated using a new atmospheric observatory (named OASIS for "Observations of the Atmosphere by Solar absorption Infrared Spectroscopy", installed in Créteil (France. The capacity of the technique to separate stratospheric and tropospheric ozone is demonstrated. Daily mean tropospheric ozone columns derived from the Infrared Atmospheric Sounding Interferometer (IASI and from OASIS measurements are compared for summer 2009 and a good agreement of −5.6 (±16.1 % is observed. Also, a qualitative comparison between in-situ surface ozone measurements and OASIS data reveals OASIS's capacity to monitor seasonal tropospheric ozone variations, as well as ozone pollution episodes in summer 2009 around Paris. Two extreme pollution events are identified (on the 1 July and 6 August 2009 for which ozone partial columns from OASIS and predictions from a regional air-quality model (CHIMERE are compared following strict criteria of temporal and spatial coincidence. An average bias of 0.2%, a mean square error deviation of 7.6%, and a correlation coefficient of 0.91 is found between CHIMERE and OASIS, demonstrating the potential of a mid-resolution FTIR instrument in ground-based solar absorption geometry for tropospheric ozone monitoring.

Triton: Scattering models and surface/atmosphere constraints

International Nuclear Information System (INIS)

Thompson, W.R.

1989-01-01

Modeling of Triton's spectrum indicates a bright scattering layer of optical depth τ≅3 overlying an optically deep layer of CH 4 with high absorption and little scattering. UV absorption in the spectrum indicates τ≅0.3 of red-yellow haze, although some color may also arise from complex organics partially visible on the surface. An analysis of this and other (spectro)photometric evidence indicates that Triton most likely has a bright surface, which was partially visible in 1977-1980. Geometric albedo p=0.62 +0.18 -0.12 , radius r = 1480 ± 180 km, and temperature T = 48 ± 6 K. With scattering optical depths of 0.3-3 and ∼1-10 mb of N 2 , a Mars-like atmospheric density and surface visibility pertain. Imaging with the 0.62μm CH 4 filter of the Voyager 2 wide angle camera could show ∼20% contrast between the average surface and clean exposures of CH 4 ice (which is not limited to the polar caps). Low far-infrared atmospheric opacity will in principle allow the detection of thermal gradients in the surface caused by optically transmitting but infrared opaque CH 4 and N 2 ice

A Solar Radiation Parameterization for Atmospheric Studies. Volume 15

Science.gov (United States)

Chou, Ming-Dah; Suarez, Max J. (Editor)

1999-01-01

The solar radiation parameterization (CLIRAD-SW) developed at the Goddard Climate and Radiation Branch for application to atmospheric models are described. It includes the absorption by water vapor, O3, O2, CO2, clouds, and aerosols and the scattering by clouds, aerosols, and gases. Depending upon the nature of absorption, different approaches are applied to different absorbers. In the ultraviolet and visible regions, the spectrum is divided into 8 bands, and single O3 absorption coefficient and Rayleigh scattering coefficient are used for each band. In the infrared, the spectrum is divided into 3 bands, and the k-distribution method is applied for water vapor absorption. The flux reduction due to O2 is derived from a simple function, while the flux reduction due to CO2 is derived from precomputed tables. Cloud single-scattering properties are parameterized, separately for liquid drops and ice, as functions of water amount and effective particle size. A maximum-random approximation is adopted for the overlapping of clouds at different heights. Fluxes are computed using the Delta-Eddington approximation.

Chromosomal DNA replication of Vicia faba cells

International Nuclear Information System (INIS)

Ikushima, Takaji

1976-01-01

The chromosomal DNA replication of higher plant cells has been investigated by DNA fiber autoradiography. The nuclear DNA fibers of Vicia root meristematic cells are organized into many tandem arrays of replication units or replicons which exist as clusters with respect to replication. DNA is replicated bidirectionally from the initiation points at the average rate of 0.15 μm/min at 20 0 C, and the average interinitiation interval is about 16 μm. The manner of chromosomal DNA replication in this higher plant is similar to that found in other eukaryotic cells at a subchromosomal level. (auth.)

CASPER: Concordia Atmospheric SPectroscopy of Emitted Radiation

Science.gov (United States)

de Petris, M.; Catalano, A.; de Gregori, S.; Lamagna, L.; Lattanzi, V.; Luzzi, G.; Maoli, R.; Melchiorri, A.; Melchiorri, F.; Savini, G.; Vetrani, G. G.; Battistelli, E. S.; Valenziano, L.; Mandolesi, N.; Villa, F.; Cuttaia, F.; Ade, P. A. R.; Mauskopf, P.; Orlando, A.; Encrenaz, P.; Pardo, J. R.; Cernicharo, J.

CASPER (Concordia Atmospheric SPectroscopy of Emitted Radiation) is a spectrometer proposed for installation at Dome C, devoted to measurements of atmospheric emission in the spectral region between 180 μm and 3 mm (3 55 cm-1). This instrument will be able to perform continuous spectral sampling at different altitudes at angular scales of 1°. From the recorded data it is possible to extract atmospheric transmittance within 1% in the whole wide operating band, together with water vapour content and O{2} and O{3} concentrations. CASPER will allow us to characterize the site for future FIR/mm telescopes. Atmospheric data recorded by CASPER will allow for correction of astrophysical and cosmological observations without the need for telescope-specific procedures and further loss of observation time with more precision in the observations themselves. Calibration of ground-based telescopes on known sky sources is strongly affected by atmospheric absorption. CASPER has this as its primary goal. The spectrometer is based on a Martin-Puplett interferometer. Two data sampling solutions will be performed: phase modulation & fast scan strategy. Sky radiation is collected towards the interferometer by an optical setup that allows the field of view, to explore the full 0° div 90° range of elevation angles. With a low spurious polarization instrument, monitoring of polarized atmospheric contribution will be possible.

Surface micro topography replication in injection moulding

DEFF Research Database (Denmark)

Arlø, Uffe Rolf

Thermoplastic injection moulding is a widely used industrial process that involves surface generation by replication. The surface topography of injection moulded plastic parts can be important for aesthetical or technical reasons. With the emergence of microengineering and nanotechnology additional...... importance of surface topography follows. In general the replication is not perfect and the topography of the plastic part differs from the inverse topography of the mould cavity. It is desirable to be able to control the degree of replication perfection or replication quality. This requires an understanding...... of the physical mechanisms of replication. Such understanding can lead to improved process design and facilitate in-line process quality control with respect to surface properties. The purpose of the project is to identify critical factors that affect topography replication quality and to obtain an understanding...

DNA replication in ultraviolet light irradiated Chinese hamster cells: the nature of replicon inhibition and post-replication repair

International Nuclear Information System (INIS)

Doniger, J.

1978-01-01

DNA replication in ultraviolet light irradiated Chinese hamster cells was studied using techniques of DNA fiber autoradiography and alkaline sucrose sedimentation. Bidirectionally growing replicons were observed in the autoradiograms independent of the irradiation conditions. After a dose of 5 J/m 2 at 254 nm the rate of fork progression was the same as in unirradiated cells, while the rate of replication was reduced by 50%. After a dose of 10J/m 2 the rate of fork progression was reduced 40%, while the replication rate was only 25% of normal. Therefore, at low doses of ultraviolet light irradiation, the inhibition of DNA replication is due to reduction in the number of functioning replicons, while at higher doses the rate of fork progression is also slowed. Those replicons which no longer function after irradiation are blocked in fork movement rather than replicon initiation. After irradiation, pulse label was first incorporated into short nascent strands, the average size of which was approximately equal to the distance between pyrimidine dimers. Under conditions where post-replication repair occurs these short strands were eventually joined into larger pieces. Finally, the data show that slowing post-replication repair with caffeine does not slow fork movement. The results presented here support the post-replication repair model of 'gapped synthesis' and rule out a major role for 'replicative bypass'. (author)

Particulate carbon in the atmosphere

International Nuclear Information System (INIS)

Surakka, J.

1992-01-01

Carbonaceous aerosols are emitted to the atmosphere in combustion processes. Carbon particles are very small and have a long residence time in the air. Black Carbon, a type of carbon aerosol, is a good label when transport of combustion emissions in the atmosphere is studied. It is also useful tool in air quality studies. Carbon particles absorb light 6.5 to 8 times stronger than any other particulate matter in the air. Their effect on decreasing visibility is about 50 %. Weather disturbances are also caused by carbon emissions e.g. in Kuwait. Carbon particles have big absorption surface and capacity to catalyze different heterogenous reactions in air. Due to their special chemical and physical properties particulate carbon is a significant air pollution specie, especially in urban air. Average particulate carbon concentration of 5.7 μg/m 2 have been measured in winter months in Helsinki

Dynamics of Escherichia coli Chromosome Segregation during Multifork Replication

DEFF Research Database (Denmark)

Nielsen, Henrik Jørck; Youngren, Brenda; Hansen, Flemming G.

2007-01-01

Slowly growing Escherichia coli cells have a simple cell cycle, with replication and progressive segregation of the chromosome completed before cell division. In rapidly growing cells, initiation of replication occurs before the previous replication rounds are complete. At cell division, the chro......Slowly growing Escherichia coli cells have a simple cell cycle, with replication and progressive segregation of the chromosome completed before cell division. In rapidly growing cells, initiation of replication occurs before the previous replication rounds are complete. At cell division......, the chromosomes contain multiple replication forks and must be segregated while this complex pattern of replication is still ongoing. Here, we show that replication and segregation continue in step, starting at the origin and progressing to the replication terminus. Thus, early-replicated markers on the multiple......-branched chromosomes continue to separate soon after replication to form separate protonucleoids, even though they are not segregated into different daughter cells until later generations. The segregation pattern follows the pattern of chromosome replication and does not follow the cell division cycle. No extensive...

Microbes in the upper atmosphere and unique opportunities for astrobiology research.

Science.gov (United States)

Smith, David J

2013-10-01

Microbial taxa from every major biological lineage have been detected in Earth's upper atmosphere. The goal of this review is to communicate (1) relevant astrobiology questions that can be addressed with upper atmosphere microbiology studies and (2) available sampling methods for collecting microbes at extreme altitudes. Precipitation, mountain stations, airplanes, balloons, rockets, and satellites are all feasible routes for conducting aerobiology research. However, more efficient air samplers are needed, and contamination is also a pervasive problem in the field. Measuring microbial signatures without false positives in the upper atmosphere might contribute to sterilization and bioburden reduction methods for proposed astrobiology missions. Intriguingly, environmental conditions in the upper atmosphere resemble the surface conditions of Mars (extreme cold, hypobaria, desiccation, and irradiation). Whether terrestrial microbes are active in the upper atmosphere is an area of intense research interest. If, in fact, microbial metabolism, growth, or replication is achievable independent of Earth's surface, then the search for habitable zones on other worlds should be broadened to include atmospheres (e.g., the high-altitude clouds of Venus). Furthermore, viable cells in the heavily irradiated upper atmosphere of Earth could help identify microbial genes or enzymes that bestow radiation resistance. Compelling astrobiology questions on the origin of life (if the atmosphere synthesized organic aerosols), evolution (if airborne transport influenced microbial mutation rates and speciation), and panspermia (outbound or inbound) are also testable in Earth's upper atmosphere.

Nonequilibrium Entropic Bounds for Darwinian Replicators

Directory of Open Access Journals (Sweden)

Jordi Piñero

2018-01-01

Full Text Available Life evolved on our planet by means of a combination of Darwinian selection and innovations leading to higher levels of complexity. The emergence and selection of replicating entities is a central problem in prebiotic evolution. Theoretical models have shown how populations of different types of replicating entities exclude or coexist with other classes of replicators. Models are typically kinetic, based on standard replicator equations. On the other hand, the presence of thermodynamical constraints for these systems remain an open question. This is largely due to the lack of a general theory of statistical methods for systems far from equilibrium. Nonetheless, a first approach to this problem has been put forward in a series of novel developements falling under the rubric of the extended second law of thermodynamics. The work presented here is twofold: firstly, we review this theoretical framework and provide a brief description of the three fundamental replicator types in prebiotic evolution: parabolic, malthusian and hyperbolic. Secondly, we employ these previously mentioned techinques to explore how replicators are constrained by thermodynamics. Finally, we comment and discuss where further research should be focused on.

Absorption and scattering properties of arbitrarily shaped particles in the Rayleigh domain

International Nuclear Information System (INIS)

Min, M.; Hovenier, J.W.; Dominik, C.; Koter, A. de; Yurkin, M.A.

2006-01-01

We provide a theoretical foundation for the statistical approach for computing the absorption properties of particles in the Rayleigh domain. We present a general method based on the discrete dipole approximation to compute the absorption and scattering properties of particles in the Rayleigh domain. The method allows to separate the geometrical aspects of a particle from its material properties. Doing the computation of the optical properties of a particle once, provides them for any set of refractive indices, wavelengths and orientations. This allows for fast computations of e.g. absorption spectra of arbitrarily shaped particles. Other practical applications of the method are in the interpretation of atmospheric and radar measurements as well as computations of the scattering matrix of small particles as a function of the scattering angle. In the statistical approach, the optical properties of irregularly shaped particles are represented by the average properties of an ensemble of particles with simple shapes. We show that the absorption cross section of an ensemble of arbitrarily shaped particles with arbitrary orientations can always be uniquely represented by the average absorption cross section of an ensemble of spheroidal particles with the same composition and fixed orientation. This proves for the first time that the statistical approach is generally viable in the Rayleigh domain

Rescue from replication stress during mitosis.

Science.gov (United States)

Fragkos, Michalis; Naim, Valeria

2017-04-03

Genomic instability is a hallmark of cancer and a common feature of human disorders, characterized by growth defects, neurodegeneration, cancer predisposition, and aging. Recent evidence has shown that DNA replication stress is a major driver of genomic instability and tumorigenesis. Cells can undergo mitosis with under-replicated DNA or unresolved DNA structures, and specific pathways are dedicated to resolving these structures during mitosis, suggesting that mitotic rescue from replication stress (MRRS) is a key process influencing genome stability and cellular homeostasis. Deregulation of MRRS following oncogene activation or loss-of-function of caretaker genes may be the cause of chromosomal aberrations that promote cancer initiation and progression. In this review, we discuss the causes and consequences of replication stress, focusing on its persistence in mitosis as well as the mechanisms and factors involved in its resolution, and the potential impact of incomplete replication or aberrant MRRS on tumorigenesis, aging and disease.

Site of water vapor absorption in the desert cockroach, Arenivaga investigata.

Science.gov (United States)

O'Donnell, M J

1977-01-01

The desert cockroach, Arenivaga investigata, can gain weight by absorption of water-vapor from unsaturated atmospheres above 82.5% relative humidity. Blocking the anus or the dorsal surface with wax does not prevent water vapor uptake, but interference with movements of the mouthparts or blocking the mouth with wax-prevents such uptake. Weight gains are associated with the protrusion from the mouth of two bladder-like extensions of the hypopharynx. During absorption these structures are warmer than the surrounding mouthparts, their surface temperature increasing with relative humidity. This suggests that the surfaces of the bladder-like structures function at least as sites for condensation of water vapor, but the precise location of its transfer into the hemolymph has not yet been identified. Images PMID:266217

Personality and Academic Motivation: Replication, Extension, and Replication

Science.gov (United States)

Jones, Martin H.; McMichael, Stephanie N.

2015-01-01

Previous work examines the relationships between personality traits and intrinsic/extrinsic motivation. We replicate and extend previous work to examine how personality may relate to achievement goals, efficacious beliefs, and mindset about intelligence. Approximately 200 undergraduates responded to the survey with a 150 participants replicating…

The Greenhouse Effect - Re-examination of the Impact of an Increase in Carbon Dioxide in the Atmosphere

Science.gov (United States)

Underwood, T. G.

2017-12-01

Examination of the radiation budget at the surface of the Earth shows that there are three factors affecting the surface temperature; the amount of solar radiation absorbed by the atmosphere and by the surface respectively, and the amount of leakage of infrared radiation emitted from the surface directly into space. If there were no leakage, the upwelling infrared radiation from the Earth's surface would be equal to the incoming solar radiation absorbed by the atmosphere plus twice the solar radiation absorbed by the surface. This results from the summation of a sequence of equal upward and downward re-emissions of infrared radiation absorbed by the atmosphere following the initial absorption of solar radiation. At current levels of solar absorption, this would result in total upwelling radiation of approximately 398.6 W/m2, or a maximum surface temperature of 16.4°C. Allowing for leakage of infrared radiation through the atmospheric window, the resulting emission from the Earth's surface is reduced to around 396 W/m2, corresponding to the current average global surface temperature of around 15.9°C. Absorption of solar and infrared radiation by greenhouse gases is determined by the absorption bands for the respective gases and their concentrations. Absorption of incoming solar radiation is largely by water vapor and ozone, and an increase in absorption would reduce not increase the surface temperature. Moreover, it is probable that all emitted infrared radiation that can be absorbed by greenhouse gases, primarily water vapor, with a small contribution from carbon dioxide and ozone, is already fully absorbed, and the leakage of around 5.5 % corresponds to the part of the infrared red spectrum that is not absorbed by greenhouse gases. The carbon dioxide absorption bands, which represent a very small percentage of the infrared spectrum, are most likely fully saturated. In these circumstances, increased concentrations of greenhouse gases, and carbon dioxide in

Absorption of carbon dioxide in aqueous solutions of imidazolium ionic liquids with carboxylate anions

International Nuclear Information System (INIS)

Baj, Stefan; Krawczyk, Tomasz; Dabrowska, Aleksandra; Siewniak, Agnieszka; Sobolewski, Aleksander

2015-01-01

The solubility of carbon dioxide at atmospheric pressure in aqueous mixtures of 1,3-alkyl substituted imidazolium ionic liquids (ILs) containing carboxylic anions was studied. The ILs showed increased solubility of CO 2 with decreasing water concentration. The relationship between the CO 2 concentration in solution and the mole fraction of water in the ILs describes a sigmoidal curve. The regression constants of a logistic function were used to quantitatively assess the absorbent capacity and the effect of water on CO 2 absorption. ILs containing the most basic anions, such as pivalate, propionate and acetate, had the best properties. It was observed that the impact of water on absorption primarily depended on the cation structure. The best absorption performance was observed for 1,3-dibutylimidazolium pivalate and 1-butyl-3-methyl imidazolium acetate.

DNA replication origins-where do we begin?

Science.gov (United States)

Prioleau, Marie-Noëlle; MacAlpine, David M

2016-08-01

For more than three decades, investigators have sought to identify the precise locations where DNA replication initiates in mammalian genomes. The development of molecular and biochemical approaches to identify start sites of DNA replication (origins) based on the presence of defining and characteristic replication intermediates at specific loci led to the identification of only a handful of mammalian replication origins. The limited number of identified origins prevented a comprehensive and exhaustive search for conserved genomic features that were capable of specifying origins of DNA replication. More recently, the adaptation of origin-mapping assays to genome-wide approaches has led to the identification of tens of thousands of replication origins throughout mammalian genomes, providing an unprecedented opportunity to identify both genetic and epigenetic features that define and regulate their distribution and utilization. Here we summarize recent advances in our understanding of how primary sequence, chromatin environment, and nuclear architecture contribute to the dynamic selection and activation of replication origins across diverse cell types and developmental stages. © 2016 Prioleau and MacAlpine; Published by Cold Spring Harbor Laboratory Press.

Pattern replication by confined dewetting

NARCIS (Netherlands)

Harkema, S.; Schäffer, E.; Morariu, M.D.; Steiner, U

2003-01-01

The dewetting of a polymer film in a confined geometry was employed in a pattern-replication process. The instability of dewetting films is pinned by a structured confining surface, thereby replicating its topographic pattern. Depending on the surface energy of the confining surface, two different

Armazenamento de pêssego 'Chimarrita' em atmosfera controlada e sob absorção de etileno Storage of 'Chimarrita' peach in controlled atmosphere and under ethylene absorption

Directory of Open Access Journals (Sweden)

Auri Brackmann

2003-06-01

Full Text Available Foram conduzidos dois experimentos com o objetivo de avaliar o efeito de duas formas de absorção de etileno e de condições de atmosfera controlada (AC sobre a qualidade do pêssego 'Chimarrita'. Os tratamentos do experimento 1 foram: testemunha com armazenamento refrigerado (AR; 1kPa de O2/3kPa de CO2; e 5kPa de O2/10kPa de CO2. No experimento 2, os mesmos tratamentos foram combinados com a absorção de etileno; absorção de etileno por filtro; e absorção de etileno por sache e sem absorção (testemunha. Tanto no experimento 1 como no experimento 2, os frutos foram armazenados na temperatura de -0,2ºC. As avaliações realizadas após 45 dias de armazenamento refrigerado + 2 dias em temperatura ambiente demonstraram que o uso de AC manteve os frutos com maior acidez titulável e reduziu a incidência de podridões e esporulação de fungos. Após os dois dias a 20ºC, os frutos armazenados em AC apresentaram-se mais firmes e com menor incidência de podridões e esporulação de patógenos. Os frutos mantidos na atmosfera de 5kPa de O2/10kPa de CO2 apresentaram maior incidência de lanosidade. No experimento 2, a absorção de etileno não foi eficiente na manutenção da qualidade do pêssego 'Chimarrita', mas após dois dias a 20ºC reduziu a incidência de podridões.Two experiments were carried out with the objective to evaluate the effects of two forms of ethylene absorption and controlled atmosphere (CA storage on the quality of 'Chimarrita' peaches. The treatments of the first experiment were: control (cold storage; 1kPa O2/3kPa CO2; e 5kPa O2/10kPa CO2. In the second experiment the same treatments were combined to ethylene absorption; either absorption using a filter or absorption using a sachet and no absorption at all. In both experiments, the fruits were stored at -0,2ºC for 45 days. At retrieval from storage, CA conditions maintained higher titratable acidity and reduced decay incidence and pathogen sporolution. After two

Parametrised Constants and Replication for Spatial Mobility

DEFF Research Database (Denmark)

Hüttel, Hans; Haagensen, Bjørn

2009-01-01

Parametrised replication and replication are common ways of expressing infinite computation in process calculi. While parametrised constants can be encoded using replication in the π-calculus, this changes in the presence of spatial mobility as found in e.g. the distributed π- calculus...... of the distributed π-calculus with parametrised constants and replication are incomparable. On the other hand, we shall see that there exists a simple encoding of recursion in mobile ambients....

Adenovirus sequences required for replication in vivo.

OpenAIRE

Wang, K; Pearson, G D

1985-01-01

We have studied the in vivo replication properties of plasmids carrying deletion mutations within cloned adenovirus terminal sequences. Deletion mapping located the adenovirus DNA replication origin entirely within the first 67 bp of the adenovirus inverted terminal repeat. This region could be further subdivided into two functional domains: a minimal replication origin and an adjacent auxillary region which boosted the efficiency of replication by more than 100-fold. The minimal origin occup...

Optoacoustic measurements of water vapor absorption at selected CO laser wavelengths in the 5-micron region

Science.gov (United States)

Menzies, R. T.; Shumate, M. S.

1976-01-01

Measurements of water vapor absorption were taken with a resonant optoacoustical detector (cylindrical pyrex detector, two BaF2 windows fitted into end plates at slight tilt to suppress Fabry-Perot resonances), for lack of confidence in existing spectral tabular data for the 5-7 micron region, as line shapes in the wing regions of water vapor lines are difficult to characterize. The measurements are required for air pollution studies using a CO laser, to find the differential absorption at the wavelengths in question due to atmospheric constituents other than water vapor. The design and performance of the optoacoustical detector are presented. Effects of absorption by ambient NO are considered, and the fixed-frequency discretely tunable CO laser is found suitable for monitoring urban NO concentrations in a fairly dry climate, using the water vapor absorption data obtained in the study.

Dispersive infrared spectroscopy measurements of atmospheric CO2 using a Fabry–Pérot interferometer sensor

International Nuclear Information System (INIS)

Chan, K.L.; Ning, Z.; Westerdahl, D.; Wong, K.C.; Sun, Y.W.; Hartl, A.; Wenig, M.O.

2014-01-01

In this paper, we present the first dispersive infrared spectroscopic (DIRS) measurement of atmospheric carbon dioxide (CO 2 ) using a new scanning Fabry–Pérot interferometer (FPI) sensor. The sensor measures the optical spectra in the mid infrared (3900 nm to 5220 nm) wavelength range with full width half maximum (FWHM) spectral resolution of 78.8 nm at the CO 2 absorption band (∼ 4280 nm) and sampling resolution of 20 nm. The CO 2 concentration is determined from the measured optical absorption spectra by fitting it to the CO 2 reference spectrum. Interference from other major absorbers in the same wavelength range, e.g., carbon monoxide (CO) and water vapor (H 2 O), was taken out by including their reference spectra in the fit as well. The detailed descriptions of the instrumental setup, the retrieval procedure, a modeling study for error analysis as well as laboratory validation using standard gas concentrations are presented. An iterative algorithm to account for the non-linear response of the fit function to the absorption cross sections due to the broad instrument function was developed and tested. A modeling study of the retrieval algorithm showed that errors due to instrument noise can be considerably reduced by using the dispersive spectral information in the retrieval. The mean measurement error of the prototype DIRS CO 2 measurement for 1 minute averaged data is about ± 2.5 ppmv, and down to ± 0.8 ppmv for 10 minute averaged data. A field test of atmospheric CO 2 measurements were carried out in an urban site in Hong Kong for a month and compared to a commercial non-dispersive infrared (NDIR) CO 2 analyzer. 10 minute averaged data shows good agreement between the DIRS and NDIR measurements with Pearson correlation coefficient (R) of 0.99. This new method offers an alternative approach of atmospheric CO 2 measurement featuring high accuracy, correction of non-linear absorption and interference of water vapor. - Highlights: • Dispersive infrared

Nitrogen dioxide and kerosene-flame soot calibration of photoacoustic instruments for measurement of light absorption by aerosols

International Nuclear Information System (INIS)

Arnott, W. Patrick; Moosmu''ller, Hans; Walker, John W.

2000-01-01

A nitrogen dioxide calibration method is developed to evaluate the theoretical calibration for a photoacoustic instrument used to measure light absorption by atmospheric aerosols at a laser wavelength of 532.0 nm. This method uses high concentrations of nitrogen dioxide so that both a simple extinction and the photoacoustically obtained absorption measurement may be performed simultaneously. Since Rayleigh scattering is much less than absorption for the gas, the agreement between the extinction and absorption coefficients can be used to evaluate the theoretical calibration, so that the laser gas spectra are not needed. Photoacoustic theory is developed to account for strong absorption of the laser beam power in passage through the resonator. Findings are that the photoacoustic absorption based on heat-balance theory for the instrument compares well with absorption inferred from the extinction measurement, and that both are well within values represented by published spectra of nitrogen dioxide. Photodissociation of nitrogen dioxide limits the calibration method to wavelengths longer than 398 nm. Extinction and absorption at 532 and 1047 nm were measured for kerosene-flame soot to evaluate the calibration method, and the single scattering albedo was found to be 0.31 and 0.20 at these wavelengths, respectively

Determining CDOM Absorption Spectra in Diverse Coastal Environments Using a Multiple Pathlength, Liquid Core Waveguide System. Measuring the Absorption of CDOM in the Field Using a Multiple Pathlength Liquid Waveguide System

Science.gov (United States)

Miller, Richard L.; Belz, Mathias; DelCastillo, Carlos; Trzaska, Rick

2000-01-01

We evaluated the accuracy, sensitivity and precision of a multiple pathlength, liquid core waveguide (MPLCW) system for measuring colored dissolved organic matter (CDOM) absorption in the UV-visible spectral range (370-700 nm). The MPLCW has four optical paths (2.0, 9.8, 49.3, and 204 cm) coupled to a single Teflon AF sample cell. Water samples were obtained from inland, coastal and ocean waters ranging in salinity from 0 to 36 PSU. Reference solutions for the MPLCW were made having a refractive index of the sample. CDOM absorption coefficients, a(sub CDOM), and the slope of the log-linearized absorption spectra, S, were compared with values obtained using a dual-beam spectrophotometer. Absorption of phenol red secondary standards measured by the MPLCW at 558 nm were highly correlated with spectrophotometer values (r > 0.99) and showed a linear response across all four pathlengths. Values of a(sub CDOM) measured using the MPLCW were virtually identical to spectrophotometer values over a wide range of concentrations. The dynamic range of a(sub CDOM) for MPLCW measurements was 0.002 - 231.5/m. At low CDOM concentrations (a(sub 370) CDOM) were slightly greater than MPLCW values and showed larger fluctuations at longer wavelengths due to limitations in instrument precision. In contrast, MPLCW spectra followed an exponential to 600 nm for all samples. The maximum deviation in replicate MPLCW spectra was less than 0.001 absorbance units. The portability, sampling, and optical characteristics of a MPLCW system provide significant enhancements for routine CDOM absorption measurements in a broad range of natural waters.

Mammalian RAD52 Functions in Break-Induced Replication Repair of Collapsed DNA Replication Forks.

Science.gov (United States)

Sotiriou, Sotirios K; Kamileri, Irene; Lugli, Natalia; Evangelou, Konstantinos; Da-Ré, Caterina; Huber, Florian; Padayachy, Laura; Tardy, Sebastien; Nicati, Noemie L; Barriot, Samia; Ochs, Fena; Lukas, Claudia; Lukas, Jiri; Gorgoulis, Vassilis G; Scapozza, Leonardo; Halazonetis, Thanos D

2016-12-15

Human cancers are characterized by the presence of oncogene-induced DNA replication stress (DRS), making them dependent on repair pathways such as break-induced replication (BIR) for damaged DNA replication forks. To better understand BIR, we performed a targeted siRNA screen for genes whose depletion inhibited G1 to S phase progression when oncogenic cyclin E was overexpressed. RAD52, a gene dispensable for normal development in mice, was among the top hits. In cells in which fork collapse was induced by oncogenes or chemicals, the Rad52 protein localized to DRS foci. Depletion of Rad52 by siRNA or knockout of the gene by CRISPR/Cas9 compromised restart of collapsed forks and led to DNA damage in cells experiencing DRS. Furthermore, in cancer-prone, heterozygous APC mutant mice, homozygous deletion of the Rad52 gene suppressed tumor growth and prolonged lifespan. We therefore propose that mammalian RAD52 facilitates repair of collapsed DNA replication forks in cancer cells. Copyright © 2016 The Author(s). Published by Elsevier Inc. All rights reserved.

Suppression of Poxvirus Replication by Resveratrol.

Science.gov (United States)

Cao, Shuai; Realegeno, Susan; Pant, Anil; Satheshkumar, Panayampalli S; Yang, Zhilong

2017-01-01

Poxviruses continue to cause serious diseases even after eradication of the historically deadly infectious human disease, smallpox. Poxviruses are currently being developed as vaccine vectors and cancer therapeutic agents. Resveratrol is a natural polyphenol stilbenoid found in plants that has been shown to inhibit or enhance replication of a number of viruses, but the effect of resveratrol on poxvirus replication is unknown. In the present study, we found that resveratrol dramatically suppressed the replication of vaccinia virus (VACV), the prototypic member of poxviruses, in various cell types. Resveratrol also significantly reduced the replication of monkeypox virus, a zoonotic virus that is endemic in Western and Central Africa and causes human mortality. The inhibitory effect of resveratrol on poxviruses is independent of VACV N1 protein, a potential resveratrol binding target. Further experiments demonstrated that resveratrol had little effect on VACV early gene expression, while it suppressed VACV DNA synthesis, and subsequently post-replicative gene expression.

Suppression of Poxvirus Replication by Resveratrol

Directory of Open Access Journals (Sweden)

Shuai Cao

2017-11-01

Full Text Available Poxviruses continue to cause serious diseases even after eradication of the historically deadly infectious human disease, smallpox. Poxviruses are currently being developed as vaccine vectors and cancer therapeutic agents. Resveratrol is a natural polyphenol stilbenoid found in plants that has been shown to inhibit or enhance replication of a number of viruses, but the effect of resveratrol on poxvirus replication is unknown. In the present study, we found that resveratrol dramatically suppressed the replication of vaccinia virus (VACV, the prototypic member of poxviruses, in various cell types. Resveratrol also significantly reduced the replication of monkeypox virus, a zoonotic virus that is endemic in Western and Central Africa and causes human mortality. The inhibitory effect of resveratrol on poxviruses is independent of VACV N1 protein, a potential resveratrol binding target. Further experiments demonstrated that resveratrol had little effect on VACV early gene expression, while it suppressed VACV DNA synthesis, and subsequently post-replicative gene expression.

Spectroscopic characterisation of an atmospheric pressure glow discharge

International Nuclear Information System (INIS)

Gomez, S.; Steen, P.G.; Morrow, T.; Graham, W.G.

2001-01-01

Recently there has been considerable interest in atmospheric discharges operating in a glow discharge mode i.e. with a spatial and sheath structure similar to that of low pressure glow discharges. Here spectroscopy has been used to characterise an atmospheric pressure glow discharge (APGD), operating with either dry air, argon or helium gas flowing through the inter-electrode space and with the inter-electrode gap either free or with woven polypropylene or polyester samples present. Emission spectroscopy is used to determine the rotational and vibrational temperature of the nitrogen gas, while electron temperatures are determined from the relative intensities of Ar emission lines. Ozone production is monitored by a simple absorption technique to evaluate its potential in process control

Atmospheric Constraints on the Surface UV Environment of Mars at 3.9 Ga Relevant to Prebiotic Chemistry

Science.gov (United States)

Ranjan, Sukrit; Wordsworth, Robin; Sasselov, Dimitar D.

2017-08-01

Recent findings suggest that Mars may have been a clement environment for the emergence of life and may even have compared favorably to Earth in this regard. These findings have revived interest in the hypothesis that prebiotically important molecules or even nascent life may have formed on Mars and been transferred to Earth. UV light plays a key role in prebiotic chemistry. Characterizing the early martian surface UV environment is key to understanding how Mars compares to Earth as a venue for prebiotic chemistry. Here, we present two-stream, multilayer calculations of the UV surface radiance on Mars at 3.9 Ga to constrain the surface UV environment as a function of atmospheric state. We explore a wide range of atmospheric pressures, temperatures, and compositions that correspond to the diversity of martian atmospheric states consistent with available constraints. We include the effects of clouds and dust. We calculate dose rates to quantify the effect of different atmospheric states on UV-sensitive prebiotic chemistry. We find that, for normative clear-sky CO2-H2O atmospheres, the UV environment on young Mars is comparable to young Earth. This similarity is robust to moderate cloud cover; thick clouds (τcloud ≥ 100) are required to significantly affect the martian UV environment, because cloud absorption is degenerate with atmospheric CO2. On the other hand, absorption from SO2, H2S, and dust is nondegenerate with CO2, meaning that, if these constituents build up to significant levels, surface UV fluence can be suppressed. These absorbers have spectrally variable absorption, meaning that their presence affects prebiotic pathways in different ways. In particular, high SO2 environments may admit UV fluence that favors pathways conducive to abiogenesis over pathways unfavorable to it. However, better measurements of the spectral quantum yields of these pathways are required to evaluate this hypothesis definitively.

Crinivirus replication and host interactions

Directory of Open Access Journals (Sweden)

Zsofia A Kiss

2013-05-01

Full Text Available Criniviruses comprise one of the genera within the family Closteroviridae. Members in this family are restricted to the phloem and rely on whitefly vectors of the genera Bemisia and/or Trialeurodes for plant-to-plant transmission. All criniviruses have bipartite, positive-sense ssRNA genomes, although there is an unconfirmed report of one having a tripartite genome. Lettuce infectious yellows virus (LIYV is the type species of the genus, the best studied so far of the criniviruses and the first for which a reverse genetics system was available. LIYV RNA 1 encodes for proteins predicted to be involved in replication, and alone is competent for replication in protoplasts. Replication results in accumulation of cytoplasmic vesiculated membranous structures which are characteristic of most studied members of the Closteroviridae. These membranous structures, often referred to as BYV-type vesicles, are likely sites of RNA replication. LIYV RNA 2 is replicated in trans when co-infecting cells with RNA 1, but is temporally delayed relative to RNA1. Efficient RNA 2 replication also is dependent on the RNA 1-encoded RNA binding protein, P34. No LIYV RNA 2-encoded proteins have been shown to affect RNA replication, but at least four, CP, CPm, Hsp70h, and p59 are virion structural components and CPm is a determinant of whitefly transmissibility. Roles of other LIYV RNA 2-encoded proteins are largely as yet unknown, but P26 is a non-virion protein that accumulates in cells as characteristic plasmalemma deposits which in plants are localized within phloem parenchyma and companion cells over plasmodesmata connections to sieve elements. The two remaining crinivirus-conserved RNA 2-encoded proteins are P5 and P9. P5 is 39 amino acid protein and is encoded at the 5’ end of RNA 2 as ORF1 and is part of the hallmark closterovirus gene array. The orthologous gene in BYV has been shown to play a role in cell-to-cell movement and indicated to be localized to the

Effector-Triggered Self-Replication in Coupled Subsystems.

Science.gov (United States)

Komáromy, Dávid; Tezcan, Meniz; Schaeffer, Gaël; Marić, Ivana; Otto, Sijbren

2017-11-13

In living systems processes like genome duplication and cell division are carefully synchronized through subsystem coupling. If we are to create life de novo, similar control over essential processes such as self-replication need to be developed. Here we report that coupling two dynamic combinatorial subsystems, featuring two separate building blocks, enables effector-mediated control over self-replication. The subsystem based on the first building block shows only self-replication, whereas that based on the second one is solely responsive toward a specific external effector molecule. Mixing the subsystems arrests replication until the effector molecule is added, resulting in the formation of a host-effector complex and the liberation of the building block that subsequently engages in self-replication. The onset, rate and extent of self-replication is controlled by the amount of effector present. © 2017 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Addressing the "Replication Crisis": Using Original Studies to Design Replication Studies with Appropriate Statistical Power.

Science.gov (United States)

Anderson, Samantha F; Maxwell, Scott E

2017-01-01

Psychology is undergoing a replication crisis. The discussion surrounding this crisis has centered on mistrust of previous findings. Researchers planning replication studies often use the original study sample effect size as the basis for sample size planning. However, this strategy ignores uncertainty and publication bias in estimated effect sizes, resulting in overly optimistic calculations. A psychologist who intends to obtain power of .80 in the replication study, and performs calculations accordingly, may have an actual power lower than .80. We performed simulations to reveal the magnitude of the difference between actual and intended power based on common sample size planning strategies and assessed the performance of methods that aim to correct for effect size uncertainty and/or bias. Our results imply that even if original studies reflect actual phenomena and were conducted in the absence of questionable research practices, popular approaches to designing replication studies may result in a low success rate, especially if the original study is underpowered. Methods correcting for bias and/or uncertainty generally had higher actual power, but were not a panacea for an underpowered original study. Thus, it becomes imperative that 1) original studies are adequately powered and 2) replication studies are designed with methods that are more likely to yield the intended level of power.

Effect of growth regulators on 'Brookfield' apple gas diffusion and metabolism under controlled atmosphere storage

Directory of Open Access Journals (Sweden)

Auri Brackmann

2014-05-01

Full Text Available The objective of this work was to evaluate the effect of growth regulators on gas diffusion and on metabolism of 'Brookfield' apple, and to determine their correlation with quality characteristics of fruit stored in controlled atmosphere. A completely randomized design was used with four replicates. After eight months of storage, the effects of water (control, aminoethoxyvinylglycine (AVG, AVG + ethephon, AVG + naphthaleneacetic acid (NAA, ethephon + NAA, sole NAA, 1-MCP, ethylene absorption by potassium permanganate (ABS, AVG + ABS, and of AVG + 1-MCP - applied at different rates and periods - were evaluated on: gas diffusion rate, ethylene production, respiratory rate, internal ethylene concentration, internal CO2 content, mealiness, and intercellular space. Fruit from the control and sole NAA treatments had the highest mealiness occurrence. Growth regulators significantly changed the gaseous diffusion through the pulp of 'Brookfield' apple, mainly in the treatment AVG + ABS, which kept the highest gas diffusion rate. NAA spraying in the field, with or without another growth regulator, increased ripening metabolism by rising ethylene production and respiration rate, and reduced gas diffusion during shelf life. AVG spraying cannot avoid the ethephon effect during the ripening process, and reduces both the internal space and mealiness incidence, but it is not able to induce ethylene production or to increase respiration rates.

Replication and robustness in developmental research.

Science.gov (United States)

Duncan, Greg J; Engel, Mimi; Claessens, Amy; Dowsett, Chantelle J

2014-11-01

Replications and robustness checks are key elements of the scientific method and a staple in many disciplines. However, leading journals in developmental psychology rarely include explicit replications of prior research conducted by different investigators, and few require authors to establish in their articles or online appendices that their key results are robust across estimation methods, data sets, and demographic subgroups. This article makes the case for prioritizing both explicit replications and, especially, within-study robustness checks in developmental psychology. It provides evidence on variation in effect sizes in developmental studies and documents strikingly different replication and robustness-checking practices in a sample of journals in developmental psychology and a sister behavioral science-applied economics. Our goal is not to show that any one behavioral science has a monopoly on best practices, but rather to show how journals from a related discipline address vital concerns of replication and generalizability shared by all social and behavioral sciences. We provide recommendations for promoting graduate training in replication and robustness-checking methods and for editorial policies that encourage these practices. Although some of our recommendations may shift the form and substance of developmental research articles, we argue that they would generate considerable scientific benefits for the field. (PsycINFO Database Record (c) 2014 APA, all rights reserved).

Study of laser radar system using the differential absorption method for detection of air pollutants

Energy Technology Data Exchange (ETDEWEB)

Inomata, H; Igarashi, T

1975-11-01

A laser radar system using the differential absorption method for remote measurement of atmospheric NO/sub 2/ and SO/sub 2/ is studied. A simultaneous two-wavelength dye laser for the transmitter and a simultaneous two-wavelength signal processer for the receiver are developed. In using this technique, one laser shot allows the determination of NO/sub 2/ concentrations with an uncertainty equivalent to 44 ppM times the range interval (in meters). It seems that the technique is most promising for a range-resolved measurement of ambient molecular pollutants, since it has the advantage of canceling the effect of atmospheric variation in a measurement when atmospheric aerosols are used as a distributed reflector.

NIR-driven Moist Upper Atmospheres of Synchronously Rotating Temperate Terrestrial Exoplanets

Energy Technology Data Exchange (ETDEWEB)

Fujii, Yuka; Del Genio, Anthony D.; Amundsen, David S. [NASA Goddard Institute for Space Studies, 2880 Broadway, New York, NY (United States)

2017-10-20

H{sub 2}O is a key molecule in characterizing atmospheres of temperate terrestrial planets, and observations of transmission spectra are expected to play a primary role in detecting its signatures in the near future. The detectability of H{sub 2}O absorption features in transmission spectra depends on the abundance of water vapor in the upper part of the atmosphere. We study the three-dimensional distribution of atmospheric H{sub 2}O for synchronously rotating Earth-sized aquaplanets using the general circulation model (GCM) ROCKE-3D, and examine the effects of total incident flux and stellar spectral type. We observe a more gentle increase of the water vapor mixing ratio in response to increased incident flux than one-dimensional models suggest, in qualitative agreement with the climate-stabilizing effect of clouds around the substellar point previously observed in GCMs applied to synchronously rotating planets. However, the water vapor mixing ratio in the upper atmosphere starts to increase while the surface temperature is still moderate. This is explained by the circulation in the upper atmosphere being driven by the radiative heating due to absorption by water vapor and cloud particles, causing efficient vertical transport of water vapor. Consistently, the water vapor mixing ratio is found to be well-correlated with the near-infrared portion of the incident flux. We also simulate transmission spectra based on the GCM outputs, and show that for the more highly irradiated planets, the H{sub 2}O signatures may be strengthened by a factor of a few, loosening the observational demands for a H{sub 2}O detection.

How many bootstrap replicates are necessary?

Science.gov (United States)

Pattengale, Nicholas D; Alipour, Masoud; Bininda-Emonds, Olaf R P; Moret, Bernard M E; Stamatakis, Alexandros

2010-03-01

Phylogenetic bootstrapping (BS) is a standard technique for inferring confidence values on phylogenetic trees that is based on reconstructing many trees from minor variations of the input data, trees called replicates. BS is used with all phylogenetic reconstruction approaches, but we focus here on one of the most popular, maximum likelihood (ML). Because ML inference is so computationally demanding, it has proved too expensive to date to assess the impact of the number of replicates used in BS on the relative accuracy of the support values. For the same reason, a rather small number (typically 100) of BS replicates are computed in real-world studies. Stamatakis et al. recently introduced a BS algorithm that is 1 to 2 orders of magnitude faster than previous techniques, while yielding qualitatively comparable support values, making an experimental study possible. In this article, we propose stopping criteria--that is, thresholds computed at runtime to determine when enough replicates have been generated--and we report on the first large-scale experimental study to assess the effect of the number of replicates on the quality of support values, including the performance of our proposed criteria. We run our tests on 17 diverse real-world DNA--single-gene as well as multi-gene--datasets, which include 125-2,554 taxa. We find that our stopping criteria typically stop computations after 100-500 replicates (although the most conservative criterion may continue for several thousand replicates) while producing support values that correlate at better than 99.5% with the reference values on the best ML trees. Significantly, we also find that the stopping criteria can recommend very different numbers of replicates for different datasets of comparable sizes. Our results are thus twofold: (i) they give the first experimental assessment of the effect of the number of BS replicates on the quality of support values returned through BS, and (ii) they validate our proposals for

Non‐Canonical Replication Initiation: You’re Fired!

Directory of Open Access Journals (Sweden)

Bazilė Ravoitytė

2017-01-01

Full Text Available The division of prokaryotic and eukaryotic cells produces two cells that inherit a perfect copy of the genetic material originally derived from the mother cell. The initiation of canonical DNA replication must be coordinated to the cell cycle to ensure the accuracy of genome duplication. Controlled replication initiation depends on a complex interplay of cis‐acting DNA sequences, the so‐called origins of replication (ori, with trans‐acting factors involved in the onset of DNA synthesis. The interplay of cis‐acting elements and trans‐acting factors ensures that cells initiate replication at sequence‐specific sites only once, and in a timely order, to avoid chromosomal endoreplication. However, chromosome breakage and excessive RNA:DNA hybrid formation can cause breakinduced (BIR or transcription‐initiated replication (TIR, respectively. These non‐canonical replication events are expected to affect eukaryotic genome function and maintenance, and could be important for genome evolution and disease development. In this review, we describe the difference between canonical and non‐canonical DNA replication, and focus on mechanistic differences and common features between BIR and TIR. Finally, we discuss open issues on the factors and molecular mechanisms involved in TIR.

Factors influencing microinjection molding replication quality

Science.gov (United States)

Vera, Julie; Brulez, Anne-Catherine; Contraires, Elise; Larochette, Mathieu; Trannoy-Orban, Nathalie; Pignon, Maxime; Mauclair, Cyril; Valette, Stéphane; Benayoun, Stéphane

2018-01-01

In recent years, there has been increased interest in producing and providing high-precision plastic parts that can be manufactured by microinjection molding: gears, pumps, optical grating elements, and so on. For all of these applications, the replication quality is essential. This study has two goals: (1) fabrication of high-precision parts using the conventional injection molding machine; (2) identification of robust parameters that ensure production quality. Thus, different technological solutions have been used: cavity vacuuming and the use of a mold coated with DLC or CrN deposits. AFM and SEM analyses were carried out to characterize the replication profile. The replication quality was studied in terms of the process parameters, coated and uncoated molds and crystallinity of the polymer. Specific studies were processed to quantify the replicability of injection molded parts (ABS, PC and PP). Analysis of the Taguchi experimental designs permits prioritization of the impact of each parameter on the replication quality. A discussion taking into account these new parameters and the thermal and spreading properties on the coatings is proposed. It appeared that, in general, increasing the mold temperature improves the molten polymer fill in submicron features except for the steel insert (for which the presence of a vacuum is the most important factor). Moreover, the DLC coating was the best coating to increase the quality of the replication. This result could be explained by the lower thermal diffusivity of this coating. We noted that the viscosity of the polymers is not a primordial factor of the replication quality.

Realistic Vascular Replicator for TAVR Procedures.

Science.gov (United States)

Rotman, Oren M; Kovarovic, Brandon; Sadasivan, Chander; Gruberg, Luis; Lieber, Baruch B; Bluestein, Danny

2018-04-13

Transcatheter aortic valve replacement (TAVR) is an over-the-wire procedure for treatment of severe aortic stenosis (AS). TAVR valves are conventionally tested using simplified left heart simulators (LHS). While those provide baseline performance reliably, their aortic root geometries are far from the anatomical in situ configuration, often overestimating the valves' performance. We report on a novel benchtop patient-specific arterial replicator designed for testing TAVR and training interventional cardiologists in the procedure. The Replicator is an accurate model of the human upper body vasculature for training physicians in percutaneous interventions. It comprises of fully-automated Windkessel mechanism to recreate physiological flow conditions. Calcified aortic valve models were fabricated and incorporated into the Replicator, then tested for performing TAVR procedure by an experienced cardiologist using the Inovare valve. EOA, pressures, and angiograms were monitored pre- and post-TAVR. A St. Jude mechanical valve was tested as a reference that is less affected by the AS anatomy. Results in the Replicator of both valves were compared to the performance in a commercial ISO-compliant LHS. The AS anatomy in the Replicator resulted in a significant decrease of the TAVR valve performance relative to the simplified LHS, with EOA and transvalvular pressures comparable to clinical data. Minor change was seen in the mechanical valve performance. The Replicator showed to be an effective platform for TAVR testing. Unlike a simplified geometric anatomy LHS, it conservatively provides clinically-relevant outcomes and complement it. The Replicator can be most valuable for testing new valves under challenging patient anatomies, physicians training, and procedural planning.

Theoretical Calculation and Validation of the Water Vapor Continuum Absorption

Science.gov (United States)

Ma, Qiancheng; Tipping, Richard H.

1998-01-01

The primary objective of this investigation is the development of an improved parameterization of the water vapor continuum absorption through the refinement and validation of our existing theoretical formalism. The chief advantage of our approach is the self-consistent, first principles, basis of the formalism which allows us to predict the frequency, temperature and pressure dependence of the continuum absorption as well as provide insights into the physical mechanisms responsible for the continuum absorption. Moreover, our approach is such that the calculated continuum absorption can be easily incorporated into satellite retrieval algorithms and climate models. Accurate determination of the water vapor continuum is essential for the next generation of retrieval algorithms which propose to use the combined constraints of multi-spectral measurements such as those under development for EOS data analysis (e.g., retrieval algorithms based on MODIS and AIRS measurements); current Pathfinder activities which seek to use the combined constraints of infrared and microwave (e.g., HIRS and MSU) measurements to improve temperature and water profile retrievals, and field campaigns which seek to reconcile spectrally-resolved and broad-band measurements such as those obtained as part of FIRE. Current widely used continuum treatments have been shown to produce spectrally dependent errors, with the magnitude of the error dependent on temperature and abundance which produces errors with a seasonal and latitude dependence. Translated into flux, current water vapor continuum parameterizations produce flux errors of order 10 W/ml, which compared to the 4 W/m' magnitude of the greenhouse gas forcing and the 1-2 W/m' estimated aerosol forcing is certainly climatologically significant and unacceptably large. While it is possible to tune the empirical formalisms, the paucity of laboratory measurements, especially at temperatures of interest for atmospheric applications, preclude tuning

Replicating chromatin: a tale of histones

DEFF Research Database (Denmark)

Groth, Anja

2009-01-01

Chromatin serves structural and functional roles crucial for genome stability and correct gene expression. This organization must be reproduced on daughter strands during replication to maintain proper overlay of epigenetic fabric onto genetic sequence. Nucleosomes constitute the structural...... framework of chromatin and carry information to specify higher-order organization and gene expression. When replication forks traverse the chromosomes, nucleosomes are transiently disrupted, allowing the replication machinery to gain access to DNA. Histone recycling, together with new deposition, ensures...

Two-dimensional temperature and carbon dioxide concentration profiles in atmospheric laminar diffusion flames measured by mid-infrared direct absorption spectroscopy at 4.2 μm

Science.gov (United States)

Liu, Xunchen; Zhang, Guoyong; Huang, Yan; Wang, Yizun; Qi, Fei

2018-04-01

We present a multi-line flame thermometry technique based on mid-infrared direct absorption spectroscopy of carbon dioxide at its v_3 fundamental around 4.2 μm that is particularly suitable for sooting flames. Temperature and concentration profiles of gas phase molecules in a flame are important characteristics to understand its flame structure and combustion chemistry. One of the standard laboratory flames to analyze polycyclic aromatic hydrocarbons (PAH) and soot formation is laminar non-premixed co-flow flame, but PAH and soot introduce artifact to most non-contact optical measurements. Here we report an accurate diagnostic method of the temperature and concentration profiles of CO2 in ethylene diffusion flames by measuring its v_3 vibrational fundamental. An interband cascade laser was used to probe the R-branch bandhead at 4.2 μm, which is highly sensitive to temperature change, free from soot interference and ambient background. Calibration measurement was carried out both in a low-pressure Herriott cell and an atmospheric pressure tube furnace up to 1550 K to obtain spectroscopic parameters for high-temperature spectra. In our co-flow flame measurement, two-dimensional line-of-sight optical depth of an ethylene/N2 laminar sooting flame was recorded by dual-beam absorption scheme. The axially symmetrical attenuation coefficient profile of CO2 in the co-flow flame was reconstructed from the optical depth by Abel inversion. Spatially resolved flame temperature and in situ CO2 volume fraction profiles were derived from the calibrated CO2 spectroscopic parameters and compared with temperature profiles measured by two-line atomic fluorescence.

LIGHT SCATTERING FROM EXOPLANET OCEANS AND ATMOSPHERES

International Nuclear Information System (INIS)

Zugger, M. E.; Kane, T. J.; Kasting, J. F.; Williams, D. M.; Philbrick, C. R.

2010-01-01

Orbital variation in reflected starlight from exoplanets could eventually be used to detect surface oceans. Exoplanets with rough surfaces, or dominated by atmospheric Rayleigh scattering, should reach peak brightness in full phase, orbital longitude (OL) = 180 0 , whereas ocean planets with transparent atmospheres should reach peak brightness in crescent phase near OL = 30 0 . Application of Fresnel theory to a planet with no atmosphere covered by a calm ocean predicts a peak polarization fraction of 1 at OL = 74 0 ; however, our model shows that clouds, wind-driven waves, aerosols, absorption, and Rayleigh scattering in the atmosphere and within the water column dilute the polarization fraction and shift the peak to other OLs. Observing at longer wavelengths reduces the obfuscation of the water polarization signature by Rayleigh scattering but does not mitigate the other effects. Planets with thick Rayleigh scattering atmospheres reach peak polarization near OL = 90 0 , but clouds and Lambertian surface scattering dilute and shift this peak to smaller OL. A shifted Rayleigh peak might be mistaken for a water signature unless data from multiple wavelength bands are available. Our calculations suggest that polarization alone may not positively identify the presence of an ocean under an Earth-like atmosphere; however, polarization adds another dimension which can be used, in combination with unpolarized orbital light curves and contrast ratios, to detect extrasolar oceans, atmospheric water aerosols, and water clouds. Additionally, the presence and direction of the polarization vector could be used to determine planet association with the star, and constrain orbit inclination.

The influence of scattering and absorption processes in sea water on atmospheric radiation - results from ship-borne DOAS measurements

Energy Technology Data Exchange (ETDEWEB)

Schoenhardt, Anja; Wittrock, Folkard; Richter, Andreas; Kirk, Henning; Schulte, Hagen I.D.B; Burrows, John P. [Institut fuer Umweltphysik, Universitaet Bremen (Germany)

2009-07-01

Absorption and inelastic scattering within water can influence the upwelling radiation over water bodies. If not identified properly, these effects impact on absorption measurements of trace gases when using nadir observations. Spectral correlations lead to incorrect trace gas amounts and reduced retrieval quality. This presentation reports on Differential Optical Absorption Spectroscopy (DOAS) measurements from a Polarstern cruise in April-May 2008 from South America to Europe. Scattered sun light was measured by two spectrometer units in the visible and UV spectral regions. The light collecting telescope was viewing alternately in different elevation angles: into zenith-sky and at slant angles above and especially below the horizon, intentionally viewing into the ocean water. The DOAS measurements were analysed in different spectral windows to identify structures not associated to well-known effects. Such persistent structures were indeed found in spectra at water viewing angles and may be caused by inelastic scattering at water molecules, by effects from substances in the water (particles, organics, etc) or by processes yet unknown. Analysing these structured residuals helps to characterise the disturbance of optical absorption measurements caused by light transmission through sea water.

Varicella-zoster virus (VZV) origin of DNA replication oriS influences origin-dependent DNA replication and flanking gene transcription.

Science.gov (United States)

Khalil, Mohamed I; Sommer, Marvin H; Hay, John; Ruyechan, William T; Arvin, Ann M

2015-07-01

The VZV genome has two origins of DNA replication (oriS), each of which consists of an AT-rich sequence and three origin binding protein (OBP) sites called Box A, C and B. In these experiments, the mutation in the core sequence CGC of the Box A and C not only inhibited DNA replication but also inhibited both ORF62 and ORF63 expression in reporter gene assays. In contrast the Box B mutation did not influence DNA replication or flanking gene transcription. These results suggest that efficient DNA replication enhances ORF62 and ORF63 transcription. Recombinant viruses carrying these mutations in both sites and one with a deletion of the whole oriS were constructed. Surprisingly, the recombinant virus lacking both copies of oriS retained the capacity to replicate in melanoma and HELF cells suggesting that VZV has another origin of DNA replication. Copyright © 2015 Elsevier Inc. All rights reserved.

Absorption of carbon dioxide in aqueous solutions of imidazolium ionic liquids with carboxylate anions

Energy Technology Data Exchange (ETDEWEB)

Baj, Stefan; Krawczyk, Tomasz; Dabrowska, Aleksandra; Siewniak, Agnieszka [Silesian University of Technology, Gliwice (Poland); Sobolewski, Aleksander [Institute for Chemical Processing of Coal, Zabrze (Poland)

2015-11-15

The solubility of carbon dioxide at atmospheric pressure in aqueous mixtures of 1,3-alkyl substituted imidazolium ionic liquids (ILs) containing carboxylic anions was studied. The ILs showed increased solubility of CO{sub 2} with decreasing water concentration. The relationship between the CO{sub 2} concentration in solution and the mole fraction of water in the ILs describes a sigmoidal curve. The regression constants of a logistic function were used to quantitatively assess the absorbent capacity and the effect of water on CO{sub 2} absorption. ILs containing the most basic anions, such as pivalate, propionate and acetate, had the best properties. It was observed that the impact of water on absorption primarily depended on the cation structure. The best absorption performance was observed for 1,3-dibutylimidazolium pivalate and 1-butyl-3-methyl imidazolium acetate.

Model for absorption and release of gaseous materials by forest canopies

International Nuclear Information System (INIS)

Murphy, C.E. Jr.

1976-01-01

A model of the physical processes defining the absorption and release of materials by a forest canopy has been developed. The model deals with the turbulent transport of gaseous materials in the surface boundary layer near the canopy, the turbulent transport in the canopy atmosphere, the transport through the boundary layer near the leaf and soil surface, and the solution of the gaseous materials in intracellular fluids and subsequent diffusion into the leaf cells. The model is used to simulate the uptake of molecular tritium by the forest canopy and the subsequent release of tritiated water. Results of dynamic simulations of tritium uptake and release are compared with data collected at the time of a release of molecular tritium to the atmosphere

Improvement of the tetrachloromercurate absorption technique for measuring low atmospheric SO2 mixing ratios

Science.gov (United States)

Jaeschke, W.; Beltz, N.; Haunold, W.; Krischke, U.

1997-07-01

During the Gas-Phase Sulfur Intercomparison Experiment (GASIE) in 1994 an analytical system for measuring sulfur dioxide mixing ratios at low parts per trillion (pptv) levels was employed. It is based on the absorption of SO2 on a tetrachloromercurate(II)-impregnated filter. The subsequent analysis uses a chemiluminescence reaction by treating the resulting disulfitomercurate(II) complex with an acidic cerium sulfate solution. An improved sampling device has been introduced that increases the maximum sampling volume from 200 L to 500 L. It is also possible to determine the blank value accurately for each sample. The absorption efficiency of the sampling system is 98.7±6.4% at a nominal flow rate of 10 L/min. The calculated (3σ) detection limit is 3±1 pptv SO2. The sample solution is stable for up to 30 days, which allows the samples to be safely stored or shipped before analysis. This permits the use of a sensitive, compact, and reliable sampling system in the field with subsequent analysis under optimal conditions in the laboratory. A continuous flow chemiluminescence (CFCL) analyzer for on-line measurements is also presented. The system is based on the same chemical principles as the described filter technique.

Portsmouth Atmospheric Science School (PASS) Project

Science.gov (United States)

Coleman, Clarence D.; Hathaway, Roger (Technical Monitor)

2002-01-01

The Portsmouth Atmospheric Science School Project (PASS) Project was granted a one-year no cost extension for 2001-2002. In year three of the project, objectives and strategies were modified based on the previous year-end evaluation. The recommendations were incorporated and the program was replicated within most of the remaining elementary schools in Portsmouth, Virginia and continued in the four middle schools. The Portsmouth Atmospheric Science School Project is a partnership, which includes Norfolk State University, Cooperating Hampton Roads Organizations for Minorities in Engineering (CHROME), NASA Langley Research Center, and the City of Portsmouth, Virginia Public Schools. The project seeks to strengthen the knowledge of Portsmouth Public Schools students in the field of atmospheric sciences and enhance teacher awareness of hands on activities in the atmospheric sciences. The project specifically seeks to: 1) increase the interest and participation of elementary and middle school students in science and mathematics; 2) strengthen existing science programs; and 3) facilitate greater achievement in core subjects, which are necessary for math, science, and technical careers. Emphasis was placed on providing training activities, materials and resources for elementary students (grades 3 - 5) and middle school students (grades 6 - 8), and teachers through a CHROME club structure. The first year of the project focused on introducing elementary students to concepts and activities in atmospheric science. Year two of the project built on the first year's activities and utilizes advanced topics and activities appropriate for middle school students. During the third year of the project, in addition to the approaches used in years one and two, emphasis was placed on activities that enhanced the Virginia Standards of Learning (SOL).

Modes of DNA repair and replication

International Nuclear Information System (INIS)

Hanawalt, P.; Kondo, S.

1979-01-01

Modes of DNA repair and replication require close coordination as well as some overlap of enzyme functions. Some classes of recovery deficient mutants may have defects in replication rather than repair modes. Lesions such as the pyrimidine dimers produced by ultraviolet light irradiation are the blocks to normal DNA replication in vivo and in vitro. The DNA synthesis by the DNA polymerase 1 of E. coli is blocked at one nucleotide away from the dimerized pyrimidines in template strands. Thus, some DNA polymerases seem to be unable to incorporate nucleotides opposite to the non-pairing lesions in template DNA strands. The lesions in template DNA strands may block the sequential addition of nucleotides in the synthesis of daughter strands. Normal replication utilizes a constitutive ''error-free'' mode that copies DNA templates with high fidelity, but which may be totally blocked at a lesion that obscures the appropriate base pairing specificity. It might be expected that modified replication system exhibits generally high error frequency. The error rate of DNA polymerases may be controlled by the degree of phosphorylation of the enzyme. Inducible SOS system is controlled by recA genes that also control the pathways for recombination. It is possible that SOS system involves some process other than the modification of a blocked replication apparatus to permit error-prone transdimer synthesis. (Yamashita, S.)

Charter School Replication. Policy Guide

Science.gov (United States)

Rhim, Lauren Morando

2009-01-01

"Replication" is the practice of a single charter school board or management organization opening several more schools that are each based on the same school model. The most rapid strategy to increase the number of new high-quality charter schools available to children is to encourage the replication of existing quality schools. This policy guide…

Scanning Transmission X-ray Microscopy: Applications in Atmospheric Aerosol Research

Energy Technology Data Exchange (ETDEWEB)

Moffet, Ryan C.; Tivanski, Alexei V.; Gilles, Mary K.

2011-01-20

Scanning transmission x-ray microscopy (STXM) combines x-ray microscopy and near edge x-ray absorption fine structure spectroscopy (NEXAFS). This combination provides spatially resolved bonding and oxidation state information. While there are reviews relevant to STXM/NEXAFS applications in other environmental fields (and magnetic materials) this chapter focuses on atmospheric aerosols. It provides an introduction to this technique in a manner approachable to non-experts. It begins with relevant background information on synchrotron radiation sources and a description of NEXAFS spectroscopy. The bulk of the chapter provides a survey of STXM/NEXAFS aerosol studies and is organized according to the type of aerosol investigated. The purpose is to illustrate the current range and recent growth of scientific investigations employing STXM-NEXAFS to probe atmospheric aerosol morphology, surface coatings, mixing states, and atmospheric processing.

Replication of kinetoplast minicircle DNA

International Nuclear Information System (INIS)

Sheline, C.T.

1989-01-01

These studies describe the isolation and characterization of early minicircle replication intermediates from Crithidia fasciculata, and Leishmania tarentolae, the mitochondrial localization of a type II topoisomerase (TIImt) in C. fasciculata, and the implication of the aforementioned TIImt in minicircle replication in L. tarentolae. Early minicircle replication intermediates from C. fasciculata were identified and characterized using isolated kinetoplasts to incorporate radiolabeled nucleotides into its DNA. The pulse-label in an apparent theta-type intermediate chase into two daughter molecules. A uniquely gapped, ribonucleotide primed, knotted molecule represents the leading strand in the model proposed, and a highly gapped molecule represents the lagging strand. This theta intermediate is repaired in vitro to a doubly nicked catenated dimer which was shown to result from the replication of a single parental molecule. Very similar intermediates were found in the heterogeneous population of minicircles of L. tarentolae. The sites of the Leishmania specific discontinuities were mapped and shown to lie within the universally conserved sequence blocks in identical positions as compared to C. fasciculata and Trypanosoma equiperdum

Manual of Cupule Replication Technology

Directory of Open Access Journals (Sweden)

Giriraj Kumar

2015-09-01

Full Text Available Throughout the world, iconic rock art is preceded by non-iconic rock art. Cupules (manmade, roughly semi-hemispherical depressions on rocks form the major bulk of the early non-iconic rock art globally. The antiquity of cupules extends back to the Lower Paleolithic in Asia and Africa, hundreds of thousand years ago. When one observes these cupules, the inquisitive mind poses so many questions with regard to understanding their technology, reasons for selecting the site, which rocks were used to make the hammer stones used, the skill and cognitive abilities employed to create the different types of cupules, the objective of their creation, their age, and so on. Replication of the cupules can provide satisfactory answers to some of these questions. Comparison of the hammer stones and cupules produced by the replication process with those obtained from excavation can provide support to observations. This paper presents a manual of cupule replication technology based on our experience of cupule replication on hard quartzite rock near Daraki-Chattan in the Chambal Basin, India.

Aerosol absorption measurement with a sinusoidal phase modulating fiber optic photo thermal interferometer

Science.gov (United States)

Li, Shuwang; Shao, Shiyong; Mei, Haiping; Rao, Ruizhong

2016-10-01

Aerosol light absorption plays an important role in the earth's atmosphere direct and semi-direct radiate forcing, simultaneously, it also has a huge influence on the visibility impairment and laser engineering application. Although various methods have been developed for measuring aerosol light absorption, huge challenge still remains in precision, accuracy and temporal resolution. The main reason is that, as a part of aerosol light extinction, aerosol light absorption always generates synchronously with aerosol light scattering, and unfortunately aerosol light scattering is much stronger in most cases. Here, a novel photo-thermal interferometry is proposed only for aerosol absorption measurement without disturbance from aerosol scattering. The photo-thermal interferometry consists of a sinusoidal phase-modulating single mode fiber-optic interferometer. The thermal dissipation, caused by aerosol energy from photo-thermal conversion when irritated by pump laser through interferometer, is detected. This approach is completely insensitive to aerosol scattering, and the single mode fiber-optic interferometer is compact, low-cost and insensitive to the polarization shading. The theory of this technique is illustrated, followed by the basic structure of the sinusoidal phase-modulating fiber-optic interferometer and demodulation algorithms. Qualitative and quantitative analysis results show that the new photo-thermal interference is a potential approach for aerosol absorption detection and environmental pollution detection.

Targeting DNA Replication Stress for Cancer Therapy

Directory of Open Access Journals (Sweden)

Jun Zhang

2016-08-01

Full Text Available The human cellular genome is under constant stress from extrinsic and intrinsic factors, which can lead to DNA damage and defective replication. In normal cells, DNA damage response (DDR mediated by various checkpoints will either activate the DNA repair system or induce cellular apoptosis/senescence, therefore maintaining overall genomic integrity. Cancer cells, however, due to constitutive growth signaling and defective DDR, may exhibit “replication stress” —a phenomenon unique to cancer cells that is described as the perturbation of error-free DNA replication and slow-down of DNA synthesis. Although replication stress has been proven to induce genomic instability and tumorigenesis, recent studies have counterintuitively shown that enhancing replicative stress through further loosening of the remaining checkpoints in cancer cells to induce their catastrophic failure of proliferation may provide an alternative therapeutic approach. In this review, we discuss the rationale to enhance replicative stress in cancer cells, past approaches using traditional radiation and chemotherapy, and emerging approaches targeting the signaling cascades induced by DNA damage. We also summarize current clinical trials exploring these strategies and propose future research directions including the use of combination therapies, and the identification of potential new targets and biomarkers to track and predict treatment responses to targeting DNA replication stress.

Global profiling of DNA replication timing and efficiency reveals that efficient replication/firing occurs late during S-phase in S. pombe.

Directory of Open Access Journals (Sweden)

Majid Eshaghi

Full Text Available BACKGROUND: During S. pombe S-phase, initiation of DNA replication occurs at multiple sites (origins that are enriched with AT-rich sequences, at various times. Current studies of genome-wide DNA replication profiles have focused on the DNA replication timing and origin location. However, the replication and/or firing efficiency of the individual origins on the genomic scale remain unclear. METHODOLOGY/PRINCIPAL FINDINGS: Using the genome-wide ORF-specific DNA microarray analysis, we show that in S. pombe, individual origins fire with varying efficiencies and at different times during S-phase. The increase in DNA copy number plotted as a function of time is approximated to the near-sigmoidal model, when considering the replication start and end timings at individual loci in cells released from HU-arrest. Replication efficiencies differ from origin to origin, depending on the origin's firing efficiency. We have found that DNA replication is inefficient early in S-phase, due to inefficient firing at origins. Efficient replication occurs later, attributed to efficient but late-firing origins. Furthermore, profiles of replication timing in cds1Delta cells are abnormal, due to the failure in resuming replication at the collapsed forks. The majority of the inefficient origins, but not the efficient ones, are found to fire in cds1Delta cells after HU removal, owing to the firing at the remaining unused (inefficient origins during HU treatment. CONCLUSIONS/SIGNIFICANCE: Taken together, our results indicate that efficient DNA replication/firing occurs late in S-phase progression in cells after HU removal, due to efficient late-firing origins. Additionally, checkpoint kinase Cds1p is required for maintaining the efficient replication/firing late in S-phase. We further propose that efficient late-firing origins are essential for ensuring completion of DNA duplication by the end of S-phase.

Aerosol Absorption by Black Carbon and Dust: Implications of Climate Change and Air Quality in Asia

Science.gov (United States)

Chin, Mian

2010-01-01

Atmospheric aerosol distributions from 2000 to 2007 are simulated with the global model GOCART to attribute light absorption by aerosol to its composition and sources. We show the seasonal and interannual variations of absorbing aerosols in the atmosphere over Asia, mainly black carbon and dust. and their linkage to the changes of anthropogenic and dust emissions in the region. We compare our results with observations from satellite and ground-based networks, and estimate the importance of black carbon and dust on regional climate forcing and air quality.

Replicated Data Management for Mobile Computing

CERN Document Server

Douglas, Terry

2008-01-01

Managing data in a mobile computing environment invariably involves caching or replication. In many cases, a mobile device has access only to data that is stored locally, and much of that data arrives via replication from other devices, PCs, and services. Given portable devices with limited resources, weak or intermittent connectivity, and security vulnerabilities, data replication serves to increase availability, reduce communication costs, foster sharing, and enhance survivability of critical information. Mobile systems have employed a variety of distributed architectures from client-server

pUL34 binding near the human cytomegalovirus origin of lytic replication enhances DNA replication and viral growth.

Science.gov (United States)

Slayton, Mark; Hossain, Tanvir; Biegalke, Bonita J

2018-05-01

The human cytomegalovirus (HCMV) UL34 gene encodes sequence-specific DNA-binding proteins (pUL34) which are required for viral replication. Interactions of pUL34 with DNA binding sites represses transcription of two viral immune evasion genes, US3 and US9. 12 additional predicted pUL34-binding sites are present in the HCMV genome (strain AD169) with three binding sites concentrated near the HCMV origin of lytic replication (oriLyt). We used ChIP-seq analysis of pUL34-DNA interactions to confirm that pUL34 binds to the oriLyt region during infection. Mutagenesis of the UL34-binding sites in an oriLyt-containing plasmid significantly reduced viral-mediated oriLyt-dependent DNA replication. Mutagenesis of these sites in the HCMV genome reduced the replication efficiencies of the resulting viruses. Protein-protein interaction analyses demonstrated that pUL34 interacts with the viral proteins IE2, UL44, and UL84, that are essential for viral DNA replication, suggesting that pUL34-DNA interactions in the oriLyt region are involved in the DNA replication cascade. Copyright © 2018 Elsevier Inc. All rights reserved.

A micro-fabricated hydrogen storage module with sub-atmospheric activation and durability in air exposure

Energy Technology Data Exchange (ETDEWEB)

Shan, Xi; Payer, Joe H. [Corrosion and Reliability Engineering, Department of Chemical and Biomolecular Engineering, University of Akron, 302 Buchtel Common, Akron, OH 44325 (United States); Wainright, Jesse S.; Dudik, Laurie [Department of Chemical Engineering, Case Western Reserve University, Cleveland, OH 44106 (United States)

2011-01-15

The objective of this work was to develop a hydrogen storage module for onboard electrical power sources suitable for use in micro-power systems and micro-electro-mechanical systems (MEMS). Hydrogen storage materials were developed as thin-film inks to be compatible with an integrated manufacturing process. Important design aspects were (a) ready activation at sub-atmospheric hydrogen pressure and room temperature and (b) durability, i.e. capable of hundreds of absorption/desorption cycles and resistance to deactivation on exposure to air. Inks with palladium-treated intermetallic hydrogen storage alloys were developed and are shown here to be compatible with a thin-film micro-fabrication process. These hydrogen storage modules absorb hydrogen readily at atmospheric pressure, and the absorption/desorption rates remained fast even after the ink was exposed to air for 47 weeks. (author)

Replication of urban innovations - prioritization of strategies for the replication of Dhaka's community-based decentralized composting model.

Science.gov (United States)

Yedla, Sudhakar

2012-01-01

Dhaka's community-based decentralized composting (DCDC) is a successful demonstration of solid waste management by adopting low-cost technology, local resources community participation and partnerships among the various actors involved. This paper attempts to understand the model, necessary conditions, strategies and their priorities to replicate DCDC in the other developing cities of Asia. Thirteen strategies required for its replication are identified and assessed based on various criteria, namely transferability, longevity, economic viability, adaptation and also overall replication. Priority setting by multi-criteria analysis by applying analytic hierarchy process revealed that immediate transferability without long-term and economic viability consideration is not advisable as this would result in unsustainable replication of DCDC. Based on the analysis, measures to ensure the product quality control; partnership among stakeholders (public-private-community); strategies to achieve better involvement of the private sector in solid waste management (entrepreneurship in approach); simple and low-cost technology; and strategies to provide an effective interface among the complementing sectors are identified as important strategies for its replication.

Replication of bacteriophage lambda DNA

International Nuclear Information System (INIS)

Tsurimoto, T.; Matsubara, K.

1983-01-01

In this paper results of studies on the mechanism of bacteriophage lambda replication using molecular biological and biochemical approaches are reported. The purification of the initiator proteins, O and P, and the role of the O and P proteins in the initiation of lambda DNA replication through interactions with specific DNA sequences are described. 47 references, 15 figures

Direct Visualization of DNA Replication Dynamics in Zebrafish Cells.

Science.gov (United States)

Kuriya, Kenji; Higashiyama, Eriko; Avşar-Ban, Eriko; Tamaru, Yutaka; Ogata, Shin; Takebayashi, Shin-ichiro; Ogata, Masato; Okumura, Katsuzumi

2015-12-01

Spatiotemporal regulation of DNA replication in the S-phase nucleus has been extensively studied in mammalian cells because it is tightly coupled with the regulation of other nuclear processes such as transcription. However, little is known about the replication dynamics in nonmammalian cells. Here, we analyzed the DNA replication processes of zebrafish (Danio rerio) cells through the direct visualization of replicating DNA in the nucleus and on DNA fiber molecules isolated from the nucleus. We found that zebrafish chromosomal DNA at the nuclear interior was replicated first, followed by replication of DNA at the nuclear periphery, which is reminiscent of the spatiotemporal regulation of mammalian DNA replication. However, the relative duration of interior DNA replication in zebrafish cells was longer compared to mammalian cells, possibly reflecting zebrafish-specific genomic organization. The rate of replication fork progression and ori-to-ori distance measured by the DNA combing technique were ∼ 1.4 kb/min and 100 kb, respectively, which are comparable to those in mammalian cells. To our knowledge, this is a first report that measures replication dynamics in zebrafish cells.

Airborne Measurements of Atmospheric Methane Using Pulsed Laser Transmitters

Science.gov (United States)

Numata, Kenji; Riris, Haris; Wu, Stewart; Gonzalez, Brayler; Rodriguez, Michael; Hasselbrack, William; Fahey, Molly; Yu, Anthony; Stephen, Mark; Mao, Jianping;

Spectroscopy of carbonated chains: experimental investigation and observation of Titan's atmosphere

International Nuclear Information System (INIS)

Jolly, Antoine

2012-01-01

In this report for an Accreditation to Supervise Research (HDR), the author proposes an overview of his research works. These works first addressed quantitative spectroscopy and more particularly the measurement of absolute absorption coefficients which are necessary parameters for the quantification of molecules which are remotely sensed through their spectroscopic signature. Secondly, the author addresses the adjustment of line lists in the infrared for a better investigation of recent observations of Titan's atmosphere made by the Cassini mission. Thirdly, he reports the use of this line list for the processing of observations of Titan. The last part addresses an experimental atmospheric simulation which aims at reproducing Titan's atmosphere by submitting its main components (nitrogen and methane) to an energetic flow representative of what is present on Titan

Geological Sulfur Isotopes Indicate Elevated OCS in the Archean Atmosphere, Solving the Faint Young Sun Paradox

DEFF Research Database (Denmark)

Ueno, Yuichiro; Johnson, Matthew Stanley; Danielache, Sebastian Oscar

2009-01-01

Distributions of sulfur isotopes in geological samples would provide a record of atmospheric composition if the mechanism producing the isotope effects could be described quantitatively. We determined the UV absorption spectra of 32SO2, 33SO2, and 34SO2 and use them to interpret the geological re......-rich, reducing Archean atmosphere. The radiative forcing, due to this level of OCS, is able to resolve the faint young sun paradox. Further, the decline of atmospheric OCS may have caused the late Archean glaciation....

Remote sensing of atmospheric optical depth using a smartphone sun photometer.

Science.gov (United States)

Cao, Tingting; Thompson, Jonathan E

2014-01-01

In recent years, smart phones have been explored for making a variety of mobile measurements. Smart phones feature many advanced sensors such as cameras, GPS capability, and accelerometers within a handheld device that is portable, inexpensive, and consistently located with an end user. In this work, a smartphone was used as a sun photometer for the remote sensing of atmospheric optical depth. The top-of-the-atmosphere (TOA) irradiance was estimated through the construction of Langley plots on days when the sky was cloudless and clear. Changes in optical depth were monitored on a different day when clouds intermittently blocked the sun. The device demonstrated a measurement precision of 1.2% relative standard deviation for replicate photograph measurements (38 trials, 134 datum). However, when the accuracy of the method was assessed through using optical filters of known transmittance, a more substantial uncertainty was apparent in the data. Roughly 95% of replicate smart phone measured transmittances are expected to lie within ±11.6% of the true transmittance value. This uncertainty in transmission corresponds to an optical depth of approx. ±0.12-0.13 suggesting the smartphone sun photometer would be useful only in polluted areas that experience significant optical depths. The device can be used as a tool in the classroom to present how aerosols and gases effect atmospheric transmission. If improvements in measurement precision can be achieved, future work may allow monitoring networks to be developed in which citizen scientists submit acquired data from a variety of locations.

Remote sensing of atmospheric optical depth using a smartphone sun photometer.

Directory of Open Access Journals (Sweden)

Tingting Cao

Full Text Available In recent years, smart phones have been explored for making a variety of mobile measurements. Smart phones feature many advanced sensors such as cameras, GPS capability, and accelerometers within a handheld device that is portable, inexpensive, and consistently located with an end user. In this work, a smartphone was used as a sun photometer for the remote sensing of atmospheric optical depth. The top-of-the-atmosphere (TOA irradiance was estimated through the construction of Langley plots on days when the sky was cloudless and clear. Changes in optical depth were monitored on a different day when clouds intermittently blocked the sun. The device demonstrated a measurement precision of 1.2% relative standard deviation for replicate photograph measurements (38 trials, 134 datum. However, when the accuracy of the method was assessed through using optical filters of known transmittance, a more substantial uncertainty was apparent in the data. Roughly 95% of replicate smart phone measured transmittances are expected to lie within ±11.6% of the true transmittance value. This uncertainty in transmission corresponds to an optical depth of approx. ±0.12-0.13 suggesting the smartphone sun photometer would be useful only in polluted areas that experience significant optical depths. The device can be used as a tool in the classroom to present how aerosols and gases effect atmospheric transmission. If improvements in measurement precision can be achieved, future work may allow monitoring networks to be developed in which citizen scientists submit acquired data from a variety of locations.

Climate and atmosphere simulator for experiments on ecological systems in changing environments.

Science.gov (United States)

Verdier, Bruno; Jouanneau, Isabelle; Simonnet, Benoit; Rabin, Christian; Van Dooren, Tom J M; Delpierre, Nicolas; Clobert, Jean; Abbadie, Luc; Ferrière, Régis; Le Galliard, Jean-François

2014-01-01

Grand challenges in global change research and environmental science raise the need for replicated experiments on ecosystems subjected to controlled changes in multiple environmental factors. We designed and developed the Ecolab as a variable climate and atmosphere simulator for multifactor experimentation on natural or artificial ecosystems. The Ecolab integrates atmosphere conditioning technology optimized for accuracy and reliability. The centerpiece is a highly contained, 13-m(3) chamber to host communities of aquatic and terrestrial species and control climate (temperature, humidity, rainfall, irradiance) and atmosphere conditions (O2 and CO2 concentrations). Temperature in the atmosphere and in the water or soil column can be controlled independently of each other. All climatic and atmospheric variables can be programmed to follow dynamical trajectories and simulate gradual as well as step changes. We demonstrate the Ecolab's capacity to simulate a broad range of atmospheric and climatic conditions, their diurnal and seasonal variations, and to support the growth of a model terrestrial plant in two contrasting climate scenarios. The adaptability of the Ecolab design makes it possible to study interactions between variable climate-atmosphere factors and biotic disturbances. Developed as an open-access, multichamber platform, this equipment is available to the international scientific community for exploring interactions and feedbacks between ecological and climate systems.

Insulated hsp70B' promoter: stringent heat-inducible activity in replication-deficient, but not replication-competent adenoviruses.

Science.gov (United States)

Rohmer, Stanimira; Mainka, Astrid; Knippertz, Ilka; Hesse, Andrea; Nettelbeck, Dirk M

2008-04-01

Key to the realization of gene therapy is the development of efficient and targeted gene transfer vectors. Therapeutic gene transfer by replication-deficient or more recently by conditionally replication-competent/oncolytic adenoviruses has shown much promise. For specific applications, however, it will be advantageous to provide vectors that allow for external control of gene expression. The efficient cellular heat shock system in combination with available technology for focused and controlled hyperthermia suggests heat-regulated transcription control as a promising tool for this purpose. We investigated the feasibility of a short fragment of the human hsp70B' promoter, with and without upstream insulator elements, for the regulation of transgene expression by replication-deficient or oncolytic adenoviruses. Two novel adenoviral vectors with an insulated hsp70B' promoter were developed and showed stringent heat-inducible gene expression with induction ratios up to 8000-fold. In contrast, regulation of gene expression from the hsp70B' promoter without insulation was suboptimal. In replication-competent/oncolytic adenoviruses regulation of the hsp70B' promoter was lost specifically during late replication in permissive cells and could not be restored by the insulators. We developed novel adenovirus gene transfer vectors that feature improved and stringent regulation of transgene expression from the hsp70B' promoter using promoter insulation. These vectors have potential for gene therapy applications that benefit from external modulation of therapeutic gene expression or for combination therapy with hyperthermia. Furthermore, our study reveals that vector replication can deregulate inserted cellular promoters, an observation which is of relevance for the development of replication-competent/oncolytic gene transfer vectors. (c) 2008 John Wiley & Sons, Ltd.

High-speed atmospheric correction for spectral image processing

Science.gov (United States)

Perkins, Timothy; Adler-Golden, Steven; Cappelaere, Patrice; Mandl, Daniel

2012-06-01

Land and ocean data product generation from visible-through-shortwave-infrared multispectral and hyperspectral imagery requires atmospheric correction or compensation, that is, the removal of atmospheric absorption and scattering effects that contaminate the measured spectra. We have recently developed a prototype software system for automated, low-latency, high-accuracy atmospheric correction based on a C++-language version of the Spectral Sciences, Inc. FLAASH™ code. In this system, pre-calculated look-up tables replace on-the-fly MODTRAN® radiative transfer calculations, while the portable C++ code enables parallel processing on multicore/multiprocessor computer systems. The initial software has been installed on the Sensor Web at NASA Goddard Space Flight Center, where it is currently atmospherically correcting new data from the EO-1 Hyperion and ALI sensors. Computation time is around 10 s per data cube per processor. Further development will be conducted to implement the new atmospheric correction software on board the upcoming HyspIRI mission's Intelligent Payload Module, where it would generate data products in nearreal time for Direct Broadcast to the ground. The rapid turn-around of data products made possible by this software would benefit a broad range of applications in areas of emergency response, environmental monitoring and national defense.

Isotope measurement techniques for atmospheric methane

International Nuclear Information System (INIS)

Lowe, D.; White, J.; Levin, I.; Wahlen, M.; Miller, J.B.; Bergamaschi, P.

2002-01-01

Measurement techniques for the carbon isotopic composition of atmospheric methane (δ 13 C) are described in detail as applied in several leading institutions active in this field since many years. The standard techniques with offline sample preparation and subsequent measurement by dual inlet isotope ratio mass spectrometry (IRMS) are compared with continuous flow IRMS. The potential use of infrared absorption spectroscopy is briefly discussed. Details on quality control and calibration are provided. Basic analytical aspects for the measurement of other species, 2 H and 14 C, are also given. (author)

Replication assessment of surface texture at sub-micrometre scale

DEFF Research Database (Denmark)

Quagliotti, Danilo; Tosello, Guido; Hansen, Hans Nørgaard

2017-01-01

[2]. A replication process requires reproducing a master geometry by conveying it to a substrate material. It is typically induced by means of different energy sources (usually heat and force) and a direct physical contact between the master and the substrate. Furthermore, concepts of advanced......, because of the replication nature of molding processes, the required specifications for the manufacture of micro molded components must be ensured by means of a metrological approach to surface replication and dimensional control of both master geometry and replicated substrate [3]-[4]. Therefore...... replication was assessed by the replication fidelity, i.e., comparing the produced parts with the tool used to replicate the geometry. Furthermore, the uncertainty of the replication fidelity was achieved by propagating the uncertainties evaluated for both masters and replicas. Finally, despite the specimens...

A TRANSMISSION SPECTRUM OF TITAN'S NORTH POLAR ATMOSPHERE FROM A SPECULAR REFLECTION OF THE SUN

Energy Technology Data Exchange (ETDEWEB)

Barnes, Jason W. [Department of Physics, University of Idaho, Moscow, ID 83844-0903 (United States); Clark, Roger N. [United States Geological Survey, Denver, CO 80225 (United States); Sotin, Christophe; Buratti, Bonnie J. [Jet Propulsion Laboratory, California Institute of Technology, 4800 Oak Grove Dr., Pasadena, CA 91109 (United States); Ádámkovics, Máté [Department of Astronomy, University of California Berkeley, Berkeley, CA 94720-3411 (United States); Appéré, Thomas; Rodriguez, Sebastien [Laboratoire AIM, Université Paris Diderot, Paris 7/CNRS/CEA-Saclay, DSM-IRFU/SAp, F-91191 Gif sur Yvette (France); Soderblom, Jason M. [Department of Earth, Atmospheric, and Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139-4307 (United States); Brown, Robert H. [Lunar and Planetary Laboratory, University of Arizona, Tucson, AZ 85721 (United States); Baines, Kevin H. [Space Science and Engineering Center, University of Wisconsin-Madison, Madison, WI, 53706 (United States); Le Mouélic, Stéphane [Laboratoire de Planétologie et Géodynamique, Université de Nantes, F-44322 Nantes (France); Nicholson, Philip D., E-mail: jwbarnes@uidaho.edu [Department of Astronomy, Cornell University, Ithaca, NY 14853 (United States)

2013-11-10

Cassini/VIMS T85 observations of a solar specular reflection off of Kivu Lacus (87.°4N 241.°1E) provide an empirical transmission spectrum of Titan's atmosphere. Because this observation was acquired from short range (33,000 km), its intensity makes it visible within the 2.0, 2.7, and 2.8 μm atmospheric windows in addition to the 5 μm window where all previous specular reflections have been seen. The resulting measurement of the total one-way normal atmospheric optical depth (corresponding to haze scattering plus haze and gas absorption) provides strong empirical constraints on radiative transfer models. Using those models, we find that the total haze column abundance in our observation is 20% higher than the Huygens equatorial value. Ours is the first measurement in the 2-5 μm wavelength range that probes all the way to the surface in Titan's arctic, where the vast majority of surface liquids are located. The specular technique complements other probes of atmospheric properties such as solar occultations and the direct measurements from Huygens. In breaking the degeneracy between surface and atmospheric absorptions, our measured optical depths will help to drive future calculations of deconvolved surface albedo spectra.

Mechanisms and regulation of DNA replication initiation in eukaryotes.

Science.gov (United States)

Parker, Matthew W; Botchan, Michael R; Berger, James M

2017-04-01

Cellular DNA replication is initiated through the action of multiprotein complexes that recognize replication start sites in the chromosome (termed origins) and facilitate duplex DNA melting within these regions. In a typical cell cycle, initiation occurs only once per origin and each round of replication is tightly coupled to cell division. To avoid aberrant origin firing and re-replication, eukaryotes tightly regulate two events in the initiation process: loading of the replicative helicase, MCM2-7, onto chromatin by the origin recognition complex (ORC), and subsequent activation of the helicase by its incorporation into a complex known as the CMG. Recent work has begun to reveal the details of an orchestrated and sequential exchange of initiation factors on DNA that give rise to a replication-competent complex, the replisome. Here, we review the molecular mechanisms that underpin eukaryotic DNA replication initiation - from selecting replication start sites to replicative helicase loading and activation - and describe how these events are often distinctly regulated across different eukaryotic model organisms.

A simulation of the OMEGA/Mars Express observations: Analysis of the atmospheric contribution

Science.gov (United States)

Melchiorri, R.; Drossart, P.; Fouchet, T.; Bézard, B.; Forget, F.; Gendrin, A.; Bibring, J. P.; Manaud, N.; OMEGA Team; Berthé, M.; Bibring, J.-P.; Langevin, Y.; Forni, O.; Gendrin, A.; Gondet, B.; Manaud, N.; Poulet, F.; Poulleau, G.; Soufflot, A.; Mangold, N.; Bonello, G.; Forget, F.; Bezard, B.; Combes, M.; Drossart, P.; Encrenaz, T.; Fouchet, T.; Melchiorri, R.; Erard, S.; Bellucci, G.; Altieri, F.; Formisano, V.; Fonti, S.; Capaccioni, F.; Cerroni, P.; Coradini, A.; Kottsov, V.; Ignatiev, N.; Moroz, V.; Titov, D.; Zasova, L.; Pinet, P.; Schmitt, B.; Sotin, C.; Hauber, E.; Hoffmann, H.; Jaumann, R.; Keller, U.; Arvidson, R.; Mustard, J.; Duxbary, T.

2006-08-01

Spectral images of Mars obtained by the Mars Express/OMEGA experiment in the near infrared are the result of a complex combination of atmospheric, aerosol and ground features. Retrieving the atmospheric information from the data is important, not only to decorrelate mineralogical against atmospheric features, but also to retrieve the atmospheric variability. Once the illumination conditions have been taken into account, the main source of variation on the CO2 absorption is due to the altitude of the surface, which governs atmospheric pressure variation by more than an order of magnitude between the summit of Olympus Mons down to the bottom of Valles Marineris. In this article we present a simplified atmospheric spectral model without scattering, specially developed for the OMEGA observations, which is used to retrieve the local topography through the analysis of the 2.0μmCO2 band. OMEGA atmospheric observations increase the horizontal resolution compared to MOLA altimetry measurements, and therefore complement the mineralogical studies from the same instrument. Finally, residual variations of the pressure can be related to atmospheric structure variation.

MASERATI: a new rocket-borne diode laser absorption spectrometer for in-situ measurement of trace gases in the middle and upper atmosphere; MASERATI: Ein neues raketengetragenes Diodenlaser-Absorptionsspektrometer zur in situ-Messung von Spurengasen in der mittleren und oberen Atmosphaere

Energy Technology Data Exchange (ETDEWEB)

Lucke, H. von

1999-09-01

MASERATI (middle atmosphere spectrometric experiment on Rockets for the analysis of trace gas influences) is the first rocket-borne tunable diode laser absorption spectrometer (TDLAS). It was developed to measure water vapor and carbon dioxide in the altitude range from 50 to 90 km and 120 km, respectively. Infrared absorption spectroscopy using two laser diodes is applied to measure both trace gases simultaneously. The laser beams are sent into an open multiple-pass absorption setup mounted on top of the sounding rocket. High sensitivity is achieved by means of frequency modulation and lock-in techniques. The results of several tests performed in the laboratory demonstrate that the instrument is capable of detecting relative absorbances down to 10{sup -4} - 10{sup -5} when integrating spectra for 1 s. Two almost identical MASERATI instruments have been built and launched on sounding rockets from the Andoeya rocket range (69 N, 16 E) in northern Norway during winter 1997/98. The results of these flights demonstrate that MASERATI is a new suitable tool for in situ studies of the mesosphere and lower thermosphere. (orig.)

Commercial Building Partnerships Replication and Diffusion

Energy Technology Data Exchange (ETDEWEB)

Antonopoulos, Chrissi A.; Dillon, Heather E.; Baechler, Michael C.

2013-09-16

This study presents findings from survey and interview data investigating replication efforts of Commercial Building Partnership (CBP) partners that worked directly with the Pacific Northwest National Laboratory (PNNL). PNNL partnered directly with 12 organizations on new and retrofit construction projects, which represented approximately 28 percent of the entire U.S. Department of Energy (DOE) CBP program. Through a feedback survey mechanism, along with personal interviews, PNNL gathered quantitative and qualitative data relating to replication efforts by each organization. These data were analyzed to provide insight into two primary research areas: 1) CBP partners’ replication efforts of technologies and approaches used in the CBP project to the rest of the organization’s building portfolio (including replication verification), and, 2) the market potential for technology diffusion into the total U.S. commercial building stock, as a direct result of the CBP program. The first area of this research focused specifically on replication efforts underway or planned by each CBP program participant. Factors that impact replication include motivation, organizational structure and objectives firms have for implementation of energy efficient technologies. Comparing these factors between different CBP partners revealed patterns in motivation for constructing energy efficient buildings, along with better insight into market trends for green building practices. The second area of this research develops a diffusion of innovations model to analyze potential broad market impacts of the CBP program on the commercial building industry in the United States.

Extremal dynamics in random replicator ecosystems

Energy Technology Data Exchange (ETDEWEB)

Kärenlampi, Petri P., E-mail: petri.karenlampi@uef.fi

2015-10-02

The seminal numerical experiment by Bak and Sneppen (BS) is repeated, along with computations with replicator models, including a greater amount of features. Both types of models do self-organize, and do obey power-law scaling for the size distribution of activity cycles. However species extinction within the replicator models interferes with the BS self-organized critical (SOC) activity. Speciation–extinction dynamics ruins any stationary state which might contain a steady size distribution of activity cycles. The BS-type activity appears as a dissimilar phenomenon in comparison to speciation–extinction dynamics in the replicator system. No criticality is found from the speciation–extinction dynamics. Neither are speciations and extinctions in real biological macroevolution known to contain any diverging distributions, or self-organization towards any critical state. Consequently, biological macroevolution probably is not a self-organized critical phenomenon. - Highlights: • Extremal Dynamics organizes random replicator ecosystems to two phases in fitness space. • Replicator systems show power-law scaling of activity. • Species extinction interferes with Bak–Sneppen type mutation activity. • Speciation–extinction dynamics does not show any critical phase transition. • Biological macroevolution probably is not a self-organized critical phenomenon.

Shot-Noise-Limited Dual-Beam Detector for Atmospheric Trace-Gas Monitoring with Near-Infrared Diode Lasers

Science.gov (United States)

Durry, Georges; Pouchet, Ivan; Amarouche, Nadir; Danguy, Théodore; Megie, Gerard

2000-10-01

A dual-beam detector is used to measure atmospheric trace species by differential absorption spectroscopy with commercial near-infrared InGaAs laser diodes. It is implemented on the Spectrom tre Diodes Laser Accordables, a balloonborne tunable diode laser spectrometer devoted to the in situ monitoring of CH 4 and H 2 O. The dual-beam detector is made of simple analogical subtractor circuits combined with InGaAs photodiodes. The detection strategy consists in taking the balanced analogical difference between the reference and the sample signals detected at the input and the output of an open optical multipass cell to apply the full dynamic range of the measurements (16 digits) to the weak molecular absorption information. The obtained sensitivity approaches the shot-noise limit. With a 56-m optical cell, the detection limit obtained when the spectra is recorded within 8 ms is 10 4 (expressed in absorbance units). The design and performances of both a simple substractor and an upgraded feedback substractor circuit are discussed with regard to atmospheric in situ CH 4 absorption spectra measured in the 1.653- m region. Mixing ratios are obtained from the absorption spectra by application of a nonlinear least-squares fit to the full molecular line shape in conjunction with in situ P and T measurements.

UV and infrared absorption spectra, atmospheric lifetimes, and ozone depletion and global warming potentials for CCl2FCCl2F (CFC-112, CCl3CClF2 (CFC-112a, CCl3CF3 (CFC-113a, and CCl2FCF3 (CFC-114a

Directory of Open Access Journals (Sweden)

M. E. Davis

2016-07-01

Full Text Available The potential impact of CCl2FCF3 (CFC-114a and the recently observed CCl2FCCl2F (CFC-112, CCl3CClF2 (CFC-112a, and CCl3CF3 (CFC-113a chlorofluorocarbons (CFCs on stratospheric ozone and climate is presently not well characterized. In this study, the UV absorption spectra of these CFCs were measured between 192.5 and 235 nm over the temperature range 207–323 K. Precise parameterizations of the UV absorption spectra are presented. A 2-D atmospheric model was used to evaluate the CFC atmospheric loss processes, lifetimes, ozone depletion potentials (ODPs, and the associated uncertainty ranges in these metrics due to the kinetic and photochemical uncertainty. The CFCs are primarily removed in the stratosphere by short-wavelength UV photolysis with calculated global annually averaged steady-state lifetimes (years of 63.6 (61.9–64.7, 51.5 (50.0–52.6, 55.4 (54.3–56.3, and 105.3 (102.9–107.4 for CFC-112, CFC-112a, CFC-113a, and CFC-114a, respectively. The range of lifetimes given in parentheses is due to the 2σ uncertainty in the UV absorption spectra and O(1D rate coefficients included in the model calculations. The 2-D model was also used to calculate the CFC ozone depletion potentials (ODPs with values of 0.98, 0.86, 0.73, and 0.72 obtained for CFC-112, CFC-112a, CFC-113a, and CFC-114a, respectively. Using the infrared absorption spectra and lifetimes determined in this work, the CFC global warming potentials (GWPs were estimated to be 4260 (CFC-112, 3330 (CFC-112a, 3650 (CFC-113a, and 6510 (CFC-114a for the 100-year time horizon.

Absorption and scattering of laser radiation by the diffusion flame of aviation kerosene

Energy Technology Data Exchange (ETDEWEB)

Gvozdev, S V; Glova, A F; Dubrovskii, V Yu; Durmanov, S T; Krasyukov, A G; Lysikov, A Yu; Smirnov, G V; Solomakhin, V B

2012-04-30

The absorption coefficient of the radiation of a repetitively pulsed Nd : YAG laser with an average output power up to 6 W and of a cw ytterbium optical fibre laser with an output power up to 3 kW was measured in the diffusion flame of aviation kerosene burning on a free surface in the atmospheric air. The absorption coefficient as a function of flame length, radiation power, and radiation intensity, which was varied in the {approx}10{sup 3} - 5 Multiplication-Sign 10{sup 4} W cm{sup -2} range, was obtained for two distances (1 and 2 cm) between the laser beam axis and the surface. The coefficient of radiation absorption by kerosene flame was compared with that in ethanol and kerosene - ethanol mixture flames. The radiation power scattered by a small segment of the kerosene flame irradiated by Nd : YAG laser radiation was measured as a function of longitudinal and azimuthal coordinates. An estimate was made of the total scattered radiation power.

Absorption and scattering of laser radiation by the diffusion flame of aviation kerosene

International Nuclear Information System (INIS)

Gvozdev, S V; Glova, A F; Dubrovskii, V Yu; Durmanov, S T; Krasyukov, A G; Lysikov, A Yu; Smirnov, G V; Solomakhin, V B

2012-01-01

The absorption coefficient of the radiation of a repetitively pulsed Nd : YAG laser with an average output power up to 6 W and of a cw ytterbium optical fibre laser with an output power up to 3 kW was measured in the diffusion flame of aviation kerosene burning on a free surface in the atmospheric air. The absorption coefficient as a function of flame length, radiation power, and radiation intensity, which was varied in the ∼10 3 - 5×10 4 W cm -2 range, was obtained for two distances (1 and 2 cm) between the laser beam axis and the surface. The coefficient of radiation absorption by kerosene flame was compared with that in ethanol and kerosene - ethanol mixture flames. The radiation power scattered by a small segment of the kerosene flame irradiated by Nd : YAG laser radiation was measured as a function of longitudinal and azimuthal coordinates. An estimate was made of the total scattered radiation power.

Absorption and scattering of laser radiation by the diffusion flame of aviation kerosene

Science.gov (United States)

Gvozdev, S. V.; Glova, A. F.; Dubrovskii, V. Yu; Durmanov, S. T.; Krasyukov, A. G.; Lysikov, A. Yu; Smirnov, G. V.; Solomakhin, V. B.

2012-04-01

The absorption coefficient of the radiation of a repetitively pulsed Nd : YAG laser with an average output power up to 6 W and of a cw ytterbium optical fibre laser with an output power up to 3 kW was measured in the diffusion flame of aviation kerosene burning on a free surface in the atmospheric air. The absorption coefficient as a function of flame length, radiation power, and radiation intensity, which was varied in the ~103 — 5×104 W cm-2 range, was obtained for two distances (1 and 2 cm) between the laser beam axis and the surface. The coefficient of radiation absorption by kerosene flame was compared with that in ethanol and kerosene — ethanol mixture flames. The radiation power scattered by a small segment of the kerosene flame irradiated by Nd : YAG laser radiation was measured as a function of longitudinal and azimuthal coordinates. An estimate was made of the total scattered radiation power.

The Genomic Replication of the Crenarchaeal Virus SIRV2

DEFF Research Database (Denmark)

Martinez Alvarez, Laura

reinitiation events may partially explain the branched topology of the viral replication intermediates. We also analyzed the intracellular location of viral replication, showing the formation of viral peripheral replication centers in SIRV2-infected cells, where viral DNA synthesis and replication...

Radiative and Thermal Impacts of Smoke Aerosol Longwave Absorption during Fires in the Moscow Region in Summer 2010

Science.gov (United States)

Gorchakova, I. A.; Mokhov, I. I.; Anikin, P. P.; Emilenko, A. S.

2018-03-01

The aerosol longwave radiative forcing of the atmosphere and heating rate of the near-surface aerosol layer are estimated for the extreme smoke conditions in the Moscow region in summer 2010. Thermal radiation fluxes in the atmosphere are determined using the integral transmission function and semiempirical aerosol model developed on the basis of standard aerosol models and measurements at the Zvenigorod Scientific Station, Obukhov Institute of Atmospheric Physics, Russian Academy of Sciences. The aerosol radiative forcing reached 33 W/m2 at the lower atmospheric boundary and ranged between-1.0 and 1.0 W/m2 at the upper atmospheric boundary. The heating rate of the 10-m atmospheric layer near surface was up to 0.2 K/h during the maximum smoke conditions on August 7-9. The sensitivity of the aerosol longwave radiative forcing to the changes in the aerosol absorption coefficient and aerosol optical thickness are estimated.

Influence of the atmospheric aerosol and air pollution on solar albedo of the earth. Vol. 4

International Nuclear Information System (INIS)

Mayhoub, A.B.; Mohamed, K.S.

1996-01-01

The effect of increasing atmospheric aerosol and air pollutant concentration on the solar albedo and consequently upon the heat budget near the earth's surface is studied. The magnitude of aerosol absorption coefficient to back-scattering coefficient B ab /B bs is calculated. This study will be used to estimate atmospheric stability categories and other meteorological parameters which are affected by thermal state radiation balance of the atmosphere as mixing and inversion height of Inshas nuclear reactor site. Consequently, concentration distribution of radioactive release from Inshas can be evaluated.. 4 figs., 5 tabs

Influence of the atmospheric aerosol and air pollution on solar albedo of the earth. Vol. 4

Energy Technology Data Exchange (ETDEWEB)

Mayhoub, A B; Mohamed, K S [Mathematics and Theoretical Physics Department, Nuclear Research Center, Atomic Energy Auhtority, Cairo, (Egypt)

1996-03-01

The effect of increasing atmospheric aerosol and air pollutant concentration on the solar albedo and consequently upon the heat budget near the earth`s surface is studied. The magnitude of aerosol absorption coefficient to back-scattering coefficient B{sub ab}/B{sub bs} is calculated. This study will be used to estimate atmospheric stability categories and other meteorological parameters which are affected by thermal state radiation balance of the atmosphere as mixing and inversion height of Inshas nuclear reactor site. Consequently, concentration distribution of radioactive release from Inshas can be evaluated.. 4 figs., 5 tabs.

The Role of the Transcriptional Response to DNA Replication Stress.

Science.gov (United States)

Herlihy, Anna E; de Bruin, Robertus A M

2017-03-02

During DNA replication many factors can result in DNA replication stress. The DNA replication stress checkpoint prevents the accumulation of replication stress-induced DNA damage and the potential ensuing genome instability. A critical role for post-translational modifications, such as phosphorylation, in the replication stress checkpoint response has been well established. However, recent work has revealed an important role for transcription in the cellular response to DNA replication stress. In this review, we will provide an overview of current knowledge of the cellular response to DNA replication stress with a specific focus on the DNA replication stress checkpoint transcriptional response and its role in the prevention of replication stress-induced DNA damage.

The Role of the Transcriptional Response to DNA Replication Stress

Science.gov (United States)

Herlihy, Anna E.; de Bruin, Robertus A.M.

2017-01-01

During DNA replication many factors can result in DNA replication stress. The DNA replication stress checkpoint prevents the accumulation of replication stress-induced DNA damage and the potential ensuing genome instability. A critical role for post-translational modifications, such as phosphorylation, in the replication stress checkpoint response has been well established. However, recent work has revealed an important role for transcription in the cellular response to DNA replication stress. In this review, we will provide an overview of current knowledge of the cellular response to DNA replication stress with a specific focus on the DNA replication stress checkpoint transcriptional response and its role in the prevention of replication stress-induced DNA damage. PMID:28257104

DNA Copy-Number Control through Inhibition of Replication Fork Progression

Directory of Open Access Journals (Sweden)

Jared T. Nordman

2014-11-01

Full Text Available Proper control of DNA replication is essential to ensure faithful transmission of genetic material and prevent chromosomal aberrations that can drive cancer progression and developmental disorders. DNA replication is regulated primarily at the level of initiation and is under strict cell-cycle regulation. Importantly, DNA replication is highly influenced by developmental cues. In Drosophila, specific regions of the genome are repressed for DNA replication during differentiation by the SNF2 domain-containing protein SUUR through an unknown mechanism. We demonstrate that SUUR is recruited to active replication forks and mediates the repression of DNA replication by directly inhibiting replication fork progression instead of functioning as a replication fork barrier. Mass spectrometry identification of SUUR-associated proteins identified the replicative helicase member CDC45 as a SUUR-associated protein, supporting a role for SUUR directly at replication forks. Our results reveal that control of eukaryotic DNA copy number can occur through the inhibition of replication fork progression.

Measurement of the concentration ratio for 13N and 12N isotopes at atmospheric pressure by carbon dioxide absorption of diode laser radiation at ∼2 μm

International Nuclear Information System (INIS)

Mironchuk, E S; Nikolaev, I V; Ochkin, Vladimir N; Rodionova, S S; Spiridonov, Maksim V; Tskhai, Sergei N

2009-01-01

The ratio of 12 NO 2 and 13 CO 2 concentrations in the human exhaled air is measured by the method of diode laser spectroscopy using a three-channel optical scheme and multipass cell. Unlike the previous measurements in the spectral range of ∼4.3 μm with a resolved rotational structure at low pressure of selected samples, the present measurements are performed in the range of ∼2 μm, in which weaker absorption bands of CO 2 reside. In this case, it is possible to employ lasers and photodetectors operating at room temperature. The thorough simulation of the spectrum with collisional broadening of lines and employment of regression analysis allow one to take measurements at atmospheric pressure with the accuracy of ∼0.04%, which satisfies the requirements to medical diagnostics of ulcers. (laser spectroscopy)

Spectral model for clear sky atmospheric longwave radiation

Science.gov (United States)

Li, Mengying; Liao, Zhouyi; Coimbra, Carlos F. M.

2018-04-01

An efficient spectrally resolved radiative model is used to calculate surface downwelling longwave (DLW) radiation (0 ∼ 2500 cm-1) under clear sky (cloud free) conditions at the ground level. The wavenumber spectral resolution of the model is 0.01 cm-1 and the atmosphere is represented by 18 non-uniform plane-parallel layers with pressure in each layer determined on a pressure-based coordinate system. The model utilizes the most up-to-date (2016) HITRAN molecular spectral data for 7 atmospheric gases: H2O, CO2, O3, CH4, N2O, O2 and N2. The MT_CKD model is used to calculate water vapor and CO2 continuum absorption coefficients. Longwave absorption and scattering coefficients for aerosols are modeled using Mie theory. For the non-scattering atmosphere (aerosol free), the surface DLW agrees within 2.91% with mean values from the InterComparison of Radiation Codes in Climate Models (ICRCCM) program, with spectral deviations below 0.035 W cm m-2. For a scattering atmosphere with typical aerosol loading, the DLW calculated by the proposed model agrees within 3.08% relative error when compared to measured values at 7 climatologically diverse SURFRAD stations. This relative error is smaller than a calibrated parametric model regressed from data for those same 7 stations, and within the uncertainty (+/- 5 W m-2) of pyrgeometers commonly used for meteorological and climatological applications. The DLW increases by 1.86 ∼ 6.57 W m-2 when compared with aerosol-free conditions, and this increment decreases with increased water vapor content due to overlap with water vapor bands. As expected, the water vapor content at the layers closest to the surface contributes the most to the surface DLW, especially in the spectral region 0 ∼ 700 cm-1. Additional water vapor content (mostly from the lowest 1 km of the atmosphere) contributes to the spectral range of 400 ∼ 650 cm-1. Low altitude aerosols ( ∼ 3.46 km or less) contribute to the surface value of DLW mostly in the

Non-isothermal effects on SO2 absorption by water droplets. I - Model development. II - Results and discussion

Science.gov (United States)

Reda, M.; Carmichael, G. R.

1982-01-01

An analytic model of SO2 absorption in a falling water droplet is developed and a simulation of SO2 washout is performed. Nonisothermic effects on drop growth, droplet physical parameters, reaction rates, and multicomponent diffusion are treated in the model. The gas-liquid interface is assumed to be at equilibrium, and interfacial resistance is negligible. Raindrops are simulated as falling from a 2 km height through an atmospheric region containing SO2. The droplets decrease in size from evaporation and cooling, and their slightly basic pH aids SO2 absorption. The simulation indicates higher SO2 absorption at higher altitudes, and desorption may occur at ground level. Isothermal effects are concluded to be significant, and quantification of effects will depend on further modelling.

Vacuum outgassing from diffuse-absorptive baffle materials

International Nuclear Information System (INIS)

Egert, C.M.; Basford, J.A.

1990-01-01

Quantitative measurements of outgassing for Martin black and a variety of metallic, diffuse absorptive baffle materials under development for stray light management are reported in this paper. Outgassing measurements were made during pumpdown from atmosphere at room temperature. Mass scans indicate water was the major outgassing species for all materials tested. Calibrated measurements of water vapor outgassing as a function of time were also made for each baffle material. Most baffle materials exhibited total water vapor outgassed during pumpdown of between 1 x 10 -5 and 4 x 10 -5 moles/cm 2 . Plasma sprayed beryllium, currently under development exhibited approximately an order of magnitude lower total water vapor outgassed during pumpdown

ABSORPTION, SCATTERING, ATTENUATION COEFFICIENTS and Other Data from NOAA-11 SATELLITE and Other Platforms from 19950101 to 19951231 (NCEI Accession 9500020)

Data.gov (United States)

National Oceanic and Atmospheric Administration, Department of Commerce — The Sea surface topography, absorption, scattering, attenuation coefficients and other data in this accession was collected from NOAA-11 AVHRR satellite in East...

Energy loss of solar p modes due to the excitation of magnetic sausage tube waves: Importance of coupling the upper atmosphere

International Nuclear Information System (INIS)

Gascoyne, A.; Jain, R.; Hindman, B. W.

2014-01-01

We consider damping and absorption of solar p modes due to their energy loss to magnetic tube waves that can freely carry energy out of the acoustic cavity. The coupling of p modes and sausage tube waves is studied in a model atmosphere composed of a polytropic interior above which lies an isothermal upper atmosphere. The sausage tube waves, excited by p modes, propagate along a magnetic fibril which is assumed to be a vertically aligned, stratified, thin magnetic flux tube. The deficit of p-mode energy is quantified through the damping rate, Γ, and absorption coefficient, α. The variation of Γ and α as a function of frequency and the tube's plasma properties is studied in detail. Previous similar studies have considered only a subphotospheric layer, modeled as a polytrope that has been truncated at the photosphere. Such studies have found that the resulting energy loss by the p modes is very sensitive to the upper boundary condition, which, due to the lack of an upper atmosphere, have been imposed in a somewhat ad hoc manner. The model presented here avoids such problems by using an isothermal layer to model the overlying atmosphere (chromosphere, and, consequently, allows us to analyze the propagation of p-mode-driven sausage waves above the photosphere. In this paper, we restrict our attention to frequencies below the acoustic cut off frequency. We demonstrate the importance of coupling all waves (acoustic, magnetic) in the subsurface solar atmosphere with the overlying atmosphere in order to accurately model the interaction of solar f and p modes with sausage tube waves. In calculating the absorption and damping of p modes, we find that for low frequencies, below ≈3.5 mHz, the isothermal atmosphere, for the two-region model, behaves like a stress-free boundary condition applied at the interface (z = –z 0 ).

Energy loss of solar p modes due to the excitation of magnetic sausage tube waves: Importance of coupling the upper atmosphere

Energy Technology Data Exchange (ETDEWEB)

Gascoyne, A.; Jain, R. [Applied Mathematics Department, University of Sheffield, Sheffield S3 7RH (United Kingdom); Hindman, B. W., E-mail: a.d.gascoyne@sheffield.ac.uk, E-mail: r.jain@sheffield.ac.uk [JILA and Department of Astrophysical and Planetary Sciences, University of Colorado at Boulder, Boulder, CO 80309-0440 (United States)

2014-07-10

We consider damping and absorption of solar p modes due to their energy loss to magnetic tube waves that can freely carry energy out of the acoustic cavity. The coupling of p modes and sausage tube waves is studied in a model atmosphere composed of a polytropic interior above which lies an isothermal upper atmosphere. The sausage tube waves, excited by p modes, propagate along a magnetic fibril which is assumed to be a vertically aligned, stratified, thin magnetic flux tube. The deficit of p-mode energy is quantified through the damping rate, Γ, and absorption coefficient, α. The variation of Γ and α as a function of frequency and the tube's plasma properties is studied in detail. Previous similar studies have considered only a subphotospheric layer, modeled as a polytrope that has been truncated at the photosphere. Such studies have found that the resulting energy loss by the p modes is very sensitive to the upper boundary condition, which, due to the lack of an upper atmosphere, have been imposed in a somewhat ad hoc manner. The model presented here avoids such problems by using an isothermal layer to model the overlying atmosphere (chromosphere, and, consequently, allows us to analyze the propagation of p-mode-driven sausage waves above the photosphere. In this paper, we restrict our attention to frequencies below the acoustic cut off frequency. We demonstrate the importance of coupling all waves (acoustic, magnetic) in the subsurface solar atmosphere with the overlying atmosphere in order to accurately model the interaction of solar f and p modes with sausage tube waves. In calculating the absorption and damping of p modes, we find that for low frequencies, below ≈3.5 mHz, the isothermal atmosphere, for the two-region model, behaves like a stress-free boundary condition applied at the interface (z = –z{sub 0}).

Initiation of Replication in Escherichia coli

DEFF Research Database (Denmark)

Frimodt-Møller, Jakob

The circular chromosome of Escherichia coli is replicated by two replisomes assembled at the unique origin and moving in the opposite direction until they meet in the less well defined terminus. The key protein in initiation of replication, DnaA, facilitates the unwinding of double-stranded DNA...... to single-stranded DNA in oriC. Although DnaA is able to bind both ADP and ATP, DnaA is only active in initiation when bound to ATP. Although initiation of replication, and the regulation of this, is thoroughly investigated it is still not fully understood. The overall aim of the thesis was to investigate...... the regulation of initiation, the effect on the cell when regulation fails, and if regulation was interlinked to chromosomal organization. This thesis uncovers that there exists a subtle balance between chromosome replication and reactive oxygen species (ROS) inflicted DNA damage. Thus, failure in regulation...

LHCb Data Replication During SC3

CERN Multimedia

Smith, A

2006-01-01

LHCb's participation in LCG's Service Challenge 3 involves testing the bulk data transfer infrastructure developed to allow high bandwidth distribution of data across the grid in accordance with the computing model. To enable reliable bulk replication of data, LHCb's DIRAC system has been integrated with gLite's File Transfer Service middleware component to make use of dedicated network links between LHCb computing centres. DIRAC's Data Management tools previously allowed the replication, registration and deletion of files on the grid. For SC3 supplementary functionality has been added to allow bulk replication of data (using FTS) and efficient mass registration to the LFC replica catalog.Provisional performance results have shown that the system developed can meet the expected data replication rate required by the computing model in 2007. This paper details the experience and results of integration and utilisation of DIRAC with the SC3 transfer machinery.

Sensitivity of tropical rainbelt over Africa and Middle East to dust shortwave absorption: Experiments using a high resolution AGCM

KAUST Repository

Bangalath, Hamza Kunhu; Stenchikov, Georgiy L.

2015-01-01

Response of the rainbelt over Africa to dust direct radiative forcing has been an area of lively debate and is a subject of ongoing research. Previous modeling studies have contrasting results producing different amplitudes or even signs of responses. Uncertainties in the dust radiative forcing are thought to be the major cause of discrepancies in the simulated responses among various studies. The imaginary part of mineral dust shortwave refractive index, which defines the dust absorptivity, has a wide range of values estimated from various observational and modeling studies, as it depends on dust chemical composition and mineralogy. Balkanski et al. (2007) estimated dust shortwave refractive indices by assuming 3 different hematite contents, 0.9%, 1.5% and 2.7% by volume, which corresponds to inefficient, standard, and very efficient dust shortwave absorption, respectively. To investigate the sensitivity of the position and intensity of the tropical rainbelt over Africa and its extension to the Arabian Peninsula to dust shortwave absorption, we have conducted ensembles of numerical simulations for each of the three dust absorptivity scenarios using a high resolution Atmospheric General Circulation Model (AGCM), GFDL's High Resolution Atmospheric Model (HiRAM), at a spatial resolution of 25 km. We found that the strength and the latitudinal extent of the rainbelt are very sensitive to dust shortwave absorption, as well as circulations at various spatiotemporal scales that drive the climate of the region. Reference: Balkanski, Y., M. Schulz, T. Claquin, and S. Guibert (2007), Reevaluation of mineral aerosol radiative forcings suggests a better agreement with satellite and AERONET data, Atmos. Chem. Phys., 7, 81 - 95.

Ultrastructural Characterization of Zika Virus Replication Factories

Directory of Open Access Journals (Sweden)

Mirko Cortese

2017-02-01

Full Text Available Summary: A global concern has emerged with the pandemic spread of Zika virus (ZIKV infections that can cause severe neurological symptoms in adults and newborns. ZIKV is a positive-strand RNA virus replicating in virus-induced membranous replication factories (RFs. Here we used various imaging techniques to investigate the ultrastructural details of ZIKV RFs and their relationship with host cell organelles. Analyses of human hepatic cells and neural progenitor cells infected with ZIKV revealed endoplasmic reticulum (ER membrane invaginations containing pore-like openings toward the cytosol, reminiscent to RFs in Dengue virus-infected cells. Both the MR766 African strain and the H/PF/2013 Asian strain, the latter linked to neurological diseases, induce RFs of similar architecture. Importantly, ZIKV infection causes a drastic reorganization of microtubules and intermediate filaments forming cage-like structures surrounding the viral RF. Consistently, ZIKV replication is suppressed by cytoskeleton-targeting drugs. Thus, ZIKV RFs are tightly linked to rearrangements of the host cell cytoskeleton. : Cortese et al. show that ZIKV infection in both human hepatoma and neuronal progenitor cells induces drastic structural modification of the cellular architecture. Microtubules and intermediate filaments surround the viral replication factory composed of vesicles corresponding to ER membrane invagination toward the ER lumen. Importantly, alteration of microtubule flexibility impairs ZIKV replication. Keywords: Zika virus, flavivirus, human neural progenitor cells, replication factories, replication organelles, microtubules, intermediate filaments, electron microscopy, electron tomography, live-cell imaging

Tombusviruses upregulate phospholipid biosynthesis via interaction between p33 replication protein and yeast lipid sensor proteins during virus replication in yeast

International Nuclear Information System (INIS)

Barajas, Daniel; Xu, Kai; Sharma, Monika; Wu, Cheng-Yu; Nagy, Peter D.

2014-01-01

Positive-stranded RNA viruses induce new membranous structures and promote membrane proliferation in infected cells to facilitate viral replication. In this paper, the authors show that a plant-infecting tombusvirus upregulates transcription of phospholipid biosynthesis genes, such as INO1, OPI3 and CHO1, and increases phospholipid levels in yeast model host. This is accomplished by the viral p33 replication protein, which interacts with Opi1p FFAT domain protein and Scs2p VAP protein. Opi1p and Scs2p are phospholipid sensor proteins and they repress the expression of phospholipid genes. Accordingly, deletion of OPI1 transcription repressor in yeast has a stimulatory effect on TBSV RNA accumulation and enhanced tombusvirus replicase activity in an in vitro assay. Altogether, the presented data convincingly demonstrate that de novo lipid biosynthesis is required for optimal TBSV replication. Overall, this work reveals that a (+)RNA virus reprograms the phospholipid biosynthesis pathway in a unique way to facilitate its replication in yeast cells. - Highlights: • Tombusvirus p33 replication protein interacts with FFAT-domain host protein. • Tombusvirus replication leads to upregulation of phospholipids. • Tombusvirus replication depends on de novo lipid synthesis. • Deletion of FFAT-domain host protein enhances TBSV replication. • TBSV rewires host phospholipid synthesis

Regulation of beta cell replication

DEFF Research Database (Denmark)

Lee, Ying C; Nielsen, Jens Høiriis

2008-01-01

Beta cell mass, at any given time, is governed by cell differentiation, neogenesis, increased or decreased cell size (cell hypertrophy or atrophy), cell death (apoptosis), and beta cell proliferation. Nutrients, hormones and growth factors coupled with their signalling intermediates have been...... suggested to play a role in beta cell mass regulation. In addition, genetic mouse model studies have indicated that cyclins and cyclin-dependent kinases that determine cell cycle progression are involved in beta cell replication, and more recently, menin in association with cyclin-dependent kinase...... inhibitors has been demonstrated to be important in beta cell growth. In this review, we consider and highlight some aspects of cell cycle regulation in relation to beta cell replication. The role of cell cycle regulation in beta cell replication is mostly from studies in rodent models, but whether...

Phosphorylation of NS5A Serine-235 is essential to hepatitis C virus RNA replication and normal replication compartment formation

Energy Technology Data Exchange (ETDEWEB)

Eyre, Nicholas S., E-mail: nicholas.eyre@adelaide.edu.au [School of Biological Sciences and Research Centre for Infectious Diseases, University of Adelaide, Adelaide (Australia); Centre for Cancer Biology, SA Pathology, Adelaide (Australia); Hampton-Smith, Rachel J.; Aloia, Amanda L. [School of Biological Sciences and Research Centre for Infectious Diseases, University of Adelaide, Adelaide (Australia); Centre for Cancer Biology, SA Pathology, Adelaide (Australia); Eddes, James S. [Adelaide Proteomics Centre, School of Biological Sciences, University of Adelaide, Adelaide (Australia); Simpson, Kaylene J. [Victorian Centre for Functional Genomics, Peter MacCallum Cancer Centre, East Melbourne (Australia); The Sir Peter MacCallum Department of Oncology, University of Melbourne, Parkville (Australia); Hoffmann, Peter [Adelaide Proteomics Centre, School of Biological Sciences, University of Adelaide, Adelaide (Australia); Institute for Photonics and Advanced Sensing (IPAS), University of Adelaide, Adelaide (Australia); Beard, Michael R. [School of Biological Sciences and Research Centre for Infectious Diseases, University of Adelaide, Adelaide (Australia); Centre for Cancer Biology, SA Pathology, Adelaide (Australia)

2016-04-15

Hepatitis C virus (HCV) NS5A protein is essential for HCV RNA replication and virus assembly. Here we report the identification of NS5A phosphorylation sites Ser-222, Ser-235 and Thr-348 during an infectious HCV replication cycle and demonstrate that Ser-235 phosphorylation is essential for HCV RNA replication. Confocal microscopy revealed that both phosphoablatant (S235A) and phosphomimetic (S235D) mutants redistribute NS5A to large juxta-nuclear foci that display altered colocalization with known replication complex components. Using electron microscopy (EM) we found that S235D alters virus-induced membrane rearrangements while EM using ‘APEX2’-tagged viruses demonstrated S235D-mediated enrichment of NS5A in irregular membranous foci. Finally, using a customized siRNA screen of candidate NS5A kinases and subsequent analysis using a phospho-specific antibody, we show that phosphatidylinositol-4 kinase III alpha (PI4KIIIα) is important for Ser-235 phosphorylation. We conclude that Ser-235 phosphorylation of NS5A is essential for HCV RNA replication and normal replication complex formation and is regulated by PI4KIIIα. - Highlights: • NS5A residues Ser-222, Ser-235 and Thr-348 are phosphorylated during HCV infection. • Phosphorylation of Ser-235 is essential to HCV RNA replication. • Mutation of Ser-235 alters replication compartment localization and morphology. • Phosphatidylinositol-4 kinase III alpha is important for Ser-235 phosphorylation.

Infrared quantitative spectroscopy and planetary atmospheres

Science.gov (United States)

Flaud, J.-M.

2009-04-01

Optical measurements of atmospheric minor constituents are carried out using spectrometers working in the UV-visible, infrared and microwave spectral ranges. In all cases the quality of the analysis and of the interpretation of the atmospheric spectra requires the best possible knowledge of the molecular parameters of the species of interest. To illustrate this point we will concentrate on recent laboratory studies of nitric acid, chlorine nitrate and formaldehyde. Nitric acid is one of the important minor constituent of the terrestrial atmosphere. Using new and accurate experimental results concerning the spectroscopic properties of the H14NO3 and H15NO3 molecules, as well as improved theoretical methods (Perrin et al., 2004), it has been possible to generate an improved set of line parameters for these molecules in the 11.2 μm spectral region. These line parameters were used to detect for the first time the H15NO3 molecule in the atmosphere analyzing atmospheric spectra recorded by the MIPAS experiment. The retrievals of chlorine nitrate profiles are usually performed using absorption cross sections (Birk and Wagner, 2003). Following a high resolution analysis of the ν3 and ν4bands of this species in the 12.8 μm region wepropose, as a possibility, to use line by line calculation simulating its ν4Q-branch for the atmospheric temperature and pressure ranges. For the measurement of atmospheric formaldehyde concentrations, mid-infrared and ultraviolet absorptions are both used by ground, air or satellite instruments. It is then of the utmost importance to have consistent spectral parameters in these various spectral domains. Consequently the aim of the study performed at LISA (Gratien et al., 2007) was to intercalibrate formaldehyde spectra in the infrared and ultraviolet regions acquiring simultaneously UV and IR spectra using a common optical cell. The results of the work will be presented. Also high resolution infrared data derived from Perrin et al., 2003

Absorption studies

International Nuclear Information System (INIS)

Ganatra, R.D.

1992-01-01

Absorption studies were once quite popular but hardly anyone does them these days. It is easier to estimate the blood level of the nutrient directly by radioimmunoassay (RIA). However, the information obtained by estimating the blood levels of the nutrients is not the same that can be obtained from the absorption studies. Absorption studies are primarily done to find out whether some of the essential nutrients are absorbed from the gut or not and if they are absorbed, to determine how much is being absorbed. In the advanced countries, these tests were mostly done to detect pernicious anaemia where vitamin B 12 is not absorbed because of the lack of the intrinsic factor in the stomach. In the tropical countries, ''malabsorption syndrome'' is quire common. In this condition, several nutrients like fat, folic acid and vitamin B 12 are not absorbed. It is possible to study absorption of these nutrients by radioisotopic absorption studies

Collision-Induced Infrared Absorption by Molecular Hydrogen Pairs at Thousands of Kelvin

Directory of Open Access Journals (Sweden)

Xiaoping Li

2010-01-01

Full Text Available Collision-induced absorption by hydrogen and helium in the stellar atmospheres of cool white dwarfs causes the emission spectra to differ significantly from the expected blackbody spectra of the cores. For detailed modeling of radiative processes at temperatures up to 7000 K, the existing H2–H2 induced dipole and potential energy surfaces of high quality must be supplemented by calculations with the H2 bonds stretched or compressed far from the equilibrium length. In this work, we describe new dipole and energy surfaces, based on more than 20 000 ab initio calculations for H2–H2. Our results agree well with previous ab initio work (where those data exist; the calculated rototranslational absorption spectrum at 297.5 K matches experiment similarly well. We further report the calculated absorption spectra of H2–H2 for frequencies from the far infrared to 20 000 cm−1, at temperatures of 600 K, 1000 K, and 2000 K, for which there are no experimental data.

Uncoupling of Sister Replisomes during Eukaryotic DNA Replication

NARCIS (Netherlands)

Yardimci, Hasan; Loveland, Anna B.; Habuchi, Satoshi; van Oijen, Antoine M.; Walter, Johannes C.

2010-01-01

The duplication of eukaryotic genomes involves the replication of DNA from multiple origins of replication. In S phase, two sister replisomes assemble at each active origin, and they replicate DNA in opposite directions. Little is known about the functional relationship between sister replisomes.

Visualizing Single-molecule DNA Replication with Fluorescence Microscopy

NARCIS (Netherlands)

Tanner, Nathan A.; Loparo, Joseph J.; Oijen, Antoine M. van

2009-01-01

We describe a simple fluorescence microscopy-based real-time method for observing DNA replication at the single-molecule level. A circular, forked DNA template is attached to a functionalized glass coverslip and replicated extensively after introduction of replication proteins and nucleotides. The

Dynamic behavior of DNA replication domains

NARCIS (Netherlands)

Manders, E. M.; Stap, J.; Strackee, J.; van Driel, R.; Aten, J. A.

1996-01-01

Like many nuclear processes, DNA replication takes place in distinct domains that are scattered throughout the S-phase nucleus. Recently we have developed a fluorescent double-labeling procedure that allows us to visualize nascent DNA simultaneously with "newborn" DNA that had replicated earlier in

The evolutionary ecology of molecular replicators.

Science.gov (United States)

Nee, Sean

2016-08-01

By reasonable criteria, life on the Earth consists mainly of molecular replicators. These include viruses, transposons, transpovirons, coviruses and many more, with continuous new discoveries like Sputnik Virophage. Their study is inherently multidisciplinary, spanning microbiology, genetics, immunology and evolutionary theory, and the current view is that taking a unified approach has great power and promise. We support this with a new, unified, model of their evolutionary ecology, using contemporary evolutionary theory coupling the Price equation with game theory, studying the consequences of the molecular replicators' promiscuous use of each others' gene products for their natural history and evolutionary ecology. Even at this simple expository level, we can make a firm prediction of a new class of replicators exploiting viruses such as lentiviruses like SIVs, a family which includes HIV: these have been explicitly stated in the primary literature to be non-existent. Closely connected to this departure is the view that multicellular organism immunology is more about the management of chronic infections rather than the elimination of acute ones and new understandings emerging are changing our view of the kind of theatre we ourselves provide for the evolutionary play of molecular replicators. This study adds molecular replicators to bacteria in the emerging field of sociomicrobiology.

Temperature dependent evolution of the local electronic structure of atmospheric plasma treated carbon nanotubes: Near edge x-ray absorption fine structure study

International Nuclear Information System (INIS)

Roy, S. S.; Papakonstantinou, P.; Okpalugo, T. I. T.; Murphy, H.

2006-01-01

Near edge x-ray absorption fine structure (NEXAFS) spectroscopy has been employed to obtain the temperature dependent evolution of the electronic structure of acid treated carbon nanotubes, which were further modified by dielectric barrier discharge plasma processing in an ammonia atmosphere. The NEXAFS studies were performed from room temperature up to 900 deg. C. The presence of oxygen and nitrogen containing functional groups was observed in C K edge, N K edge, and O K edge NEXAFS spectra of the multiwalled carbon nanotubes. The N K edge spectra revealed three types of π* features, the source of which was decisively identified by their temperature dependent evolution. It was established that these features are attributed to pyridinelike, NO, and graphitelike structures, respectively. The O K edge indicated that both carbonyl (C=O), π*(CO), and ether C-O-C, σ*(CO), functionalities were present. Upon heating in a vacuum to 900 deg. C the π*(CO) resonances disappeared while the σ*(CO) resonances were still present confirming their higher thermal stability. Heating did not produce a significant change in the π* feature of the C K edge spectrum indicating that the tabular structure of the nanotubes is essentially preserved following the thermal decomposition of the functional groups on the nanotube surface

A Fuzzy Modeling Approach for Replicated Response Measures Based on Fuzzification of Replications with Descriptive Statistics and Golden Ratio

Directory of Open Access Journals (Sweden)

Özlem TÜRKŞEN

2018-03-01

Full Text Available Some of the experimental designs can be composed of replicated response measures in which the replications cannot be identified exactly and may have uncertainty different than randomness. Then, the classical regression analysis may not be proper to model the designed data because of the violation of probabilistic modeling assumptions. In this case, fuzzy regression analysis can be used as a modeling tool. In this study, the replicated response values are newly formed to fuzzy numbers by using descriptive statistics of replications and golden ratio. The main aim of the study is obtaining the most suitable fuzzy model for replicated response measures through fuzzification of the replicated values by taking into account the data structure of the replications in statistical framework. Here, the response and unknown model coefficients are considered as triangular type-1 fuzzy numbers (TT1FNs whereas the inputs are crisp. Predicted fuzzy models are obtained according to the proposed fuzzification rules by using Fuzzy Least Squares (FLS approach. The performances of the predicted fuzzy models are compared by using Root Mean Squared Error (RMSE criteria. A data set from the literature, called wheel cover component data set, is used to illustrate the performance of the proposed approach and the obtained results are discussed. The calculation results show that the combined formulation of the descriptive statistics and the golden ratio is the most preferable fuzzification rule according to the well-known decision making method, called TOPSIS, for the data set.

Absorption heat pumps

International Nuclear Information System (INIS)

Formigoni, C.

1998-01-01

A brief description of the difference between a compression and an absorption heat pump is made, and the reasons why absorption systems have spread lately are given. Studies and projects recently started in the field of absorption heat pumps, as well as criteria usually followed in project development are described. An outline (performance targets, basic components) of a project on a water/air absorption heat pump, running on natural gas or LPG, is given. The project was developed by the Robur Group as an evolution of a water absorption refrigerator operating with a water/ammonia solution, which has been on the market for a long time and recently innovated. Finally, a list of the main energy and cost advantages deriving from the use of absorption heat pumps is made [it

Chemical and physical conversion in cold atmosphere and the effect of radiation

Energy Technology Data Exchange (ETDEWEB)

Kulmala, M; Aalto, P; Korhonen, P; Laaksonen, A; Vesala, T [Helsinki Univ. (Finland). Dept. of Physics

1997-12-31

The project is focusing on the formation and growth mechanisms of atmospheric aerosol and cloud droplets. Both aerosol particles and cloud droplets affect strongly on the atmospheric radiation fluxes by scattering and absorption. The droplet formation results from physical and chemical processes occurring simultaneously. The studies concerning the tropospheric cloud droplet formation, laboratory experiments with a cloud chamber and stratospheric cloud formation are summarized. The recent studies summarized in this presentation indicate that both aerosol particles and cloud droplets have a significant role in climatic change and ozone depletion problems. The anthropogenic emissions of gaseous and particulate pollutants change the properties of atmospheric aerosols and cloud droplets. The research in this field will be continued and more quantitative understanding based both experimental and theoretical studies is required

Chemical and physical conversion in cold atmosphere and the effect of radiation

Energy Technology Data Exchange (ETDEWEB)

Kulmala, M.; Aalto, P.; Korhonen, P.; Laaksonen, A.; Vesala, T. [Helsinki Univ. (Finland). Dept. of Physics

1996-12-31

The project is focusing on the formation and growth mechanisms of atmospheric aerosol and cloud droplets. Both aerosol particles and cloud droplets affect strongly on the atmospheric radiation fluxes by scattering and absorption. The droplet formation results from physical and chemical processes occurring simultaneously. The studies concerning the tropospheric cloud droplet formation, laboratory experiments with a cloud chamber and stratospheric cloud formation are summarized. The recent studies summarized in this presentation indicate that both aerosol particles and cloud droplets have a significant role in climatic change and ozone depletion problems. The anthropogenic emissions of gaseous and particulate pollutants change the properties of atmospheric aerosols and cloud droplets. The research in this field will be continued and more quantitative understanding based both experimental and theoretical studies is required

Improving the Ni I atomic model for solar and stellar atmospheric models

International Nuclear Information System (INIS)

Vieytes, M. C.; Fontenla, J. M.

2013-01-01

Neutral nickel (Ni I) is abundant in the solar atmosphere and is one of the important elements that contribute to the emission and absorption of radiation in the spectral range between 1900 and 3900 Å. Previously, the Solar Radiation Physical Modeling (SRPM) models of the solar atmosphere only considered a few levels of this species. Here, we improve the Ni I atomic model by taking into account 61 levels and 490 spectral lines. We compute the populations of these levels in full NLTE using the SRPM code and compare the resulting emerging spectrum with observations. The present atomic model significantly improves the calculation of the solar spectral irradiance at near-UV wavelengths, which is important for Earth atmospheric studies, and particularly for ozone chemistry.

Improving the Ni I atomic model for solar and stellar atmospheric models

Energy Technology Data Exchange (ETDEWEB)

Vieytes, M. C. [Instituto de de Astronomía y Física del Espacio, CONICET and UNTREF, Buenos Aires (Argentina); Fontenla, J. M., E-mail: mariela@iafe.uba.ar, E-mail: johnf@digidyna.com [North West Research Associates, 3380 Mitchell Lane, Boulder, CO 80301 (United States)

2013-06-01

Neutral nickel (Ni I) is abundant in the solar atmosphere and is one of the important elements that contribute to the emission and absorption of radiation in the spectral range between 1900 and 3900 Å. Previously, the Solar Radiation Physical Modeling (SRPM) models of the solar atmosphere only considered a few levels of this species. Here, we improve the Ni I atomic model by taking into account 61 levels and 490 spectral lines. We compute the populations of these levels in full NLTE using the SRPM code and compare the resulting emerging spectrum with observations. The present atomic model significantly improves the calculation of the solar spectral irradiance at near-UV wavelengths, which is important for Earth atmospheric studies, and particularly for ozone chemistry.

Rapid transient production in plants by replicating and non-replicating vectors yields high quality functional anti-HIV antibody.

Directory of Open Access Journals (Sweden)

Frank Sainsbury

2010-11-01

Full Text Available The capacity of plants and plant cells to produce large amounts of recombinant protein has been well established. Due to advantages in terms of speed and yield, attention has recently turned towards the use of transient expression systems, including viral vectors, to produce proteins of pharmaceutical interest in plants. However, the effects of such high level expression from viral vectors and concomitant effects on host cells may affect the quality of the recombinant product.To assess the quality of antibodies transiently expressed to high levels in plants, we have expressed and characterised the human anti-HIV monoclonal antibody, 2G12, using both replicating and non-replicating systems based on deleted versions of Cowpea mosaic virus (CPMV RNA-2. The highest yield (approximately 100 mg/kg wet weight leaf tissue of affinity purified 2G12 was obtained when the non-replicating CPMV-HT system was used and the antibody was retained in the endoplasmic reticulum (ER. Glycan analysis by mass-spectrometry showed that the glycosylation pattern was determined exclusively by whether the antibody was retained in the ER and did not depend on whether a replicating or non-replicating system was used. Characterisation of the binding and neutralisation properties of all the purified 2G12 variants from plants showed that these were generally similar to those of the Chinese hamster ovary (CHO cell-produced 2G12.Overall, the results demonstrate that replicating and non-replicating CPMV-based vectors are able to direct the production of a recombinant IgG similar in activity to the CHO-produced control. Thus, a complex recombinant protein was produced with no apparent effect on its biochemical properties using either high-level expression or viral replication. The speed with which a recombinant pharmaceutical with excellent biochemical characteristics can be produced transiently in plants makes CPMV-based expression vectors an attractive option for

Investigation on atmospheric transmittance based on spectral and total direct insolation data; Nissha data ni motozuku taiki tokaritsu no kento

Energy Technology Data Exchange (ETDEWEB)

Baba, H; Kanayama, K; Endo, N [Kitami Institute of Technology, Hokkaido (Japan)

1997-11-25

Spectral insolation values measured at Kitami since 1994 by using a multi-purpose spectral radiometer, and direct insolation data collected at seven locations are available. Based on these data, effects of sun`s altitude and atmospheric condition on atmospheric transmittance were discussed. Spectra of insolation received on the ground are subjected to scattering and absorption by gas and particulates, and show complex shapes while they transmit from the sun, reach the atmosphere of the earth and pass through the atmosphere. The Bird`s model is shown. Impact of the sun`s altitude on the spectra of insolation directly reaching the ground is small if the altitude is higher than 45 degrees. The impact grows suddenly large when it is lower than 30 degrees. Atmospheric turbidity (caused by aerosols generated by volcanic eruption or exhaust gases) affects the spectral transmittance over the whole wavelength region. Amount of steam in the atmosphere has a strong effect on the spectral transmittance in the steam absorption band. Total transmittance of the atmosphere was sought based on the measurement data of insolation directly reaching the ground at eight locations from Kitami to Shiono-misaki. The transmittance at each location is in a range from 0.75 to 0.83 showing close proximity. These data agreed well also with the average transmittance surveyed by the Meteorological Agency. 7 refs., 8 figs.

Dynamics of picornavirus RNA replication within infected cells

DEFF Research Database (Denmark)

Belsham, Graham; Normann, Preben

2008-01-01

Replication of many picornaviruses is inhibited by low concentrations of guanidine. Guanidine-resistant mutants are readily isolated and the mutations map to the coding region for the 2C protein. Using in vitro replication assays it has been determined previously that guanidine blocks the initiat......Replication of many picornaviruses is inhibited by low concentrations of guanidine. Guanidine-resistant mutants are readily isolated and the mutations map to the coding region for the 2C protein. Using in vitro replication assays it has been determined previously that guanidine blocks...... the initiation of negative-strand synthesis. We have now examined the dynamics of RNA replication, measured by quantitative RT-PCR, within cells infected with either swine vesicular disease virus (an enterovirus) or foot-and-mouth disease virus as regulated by the presence or absence of guanidine. Following...... the removal of guanidine from the infected cells, RNA replication occurs after a significant lag phase. This restoration of RNA synthesis requires de novo protein synthesis. Viral RNA can be maintained for at least 72 h within cells in the absence of apparent replication but guanidine-resistant virus can...

Pyrimidine dimers block simian virus 40 replication forks

International Nuclear Information System (INIS)

Berger, C.A.; Edenberg, H.J.

1986-01-01

UV light produces lesions, predominantly pyrimidine dimers, which inhibit DNA replication in mammalian cells. The mechanism of inhibition is controversial: is synthesis of a daughter strand halted at a lesion while the replication fork moves on and reinitiates downstream, or is fork progression itself blocked for some time at the site of a lesion? We directly addressed this question by using electron microscopy to examine the distances of replication forks from the origin in unirradiated and UV-irradiated simian virus 40 chromosomes. If UV lesions block replication fork progression, the forks should be asymmetrically located in a large fraction of the irradiated molecules; if replication forks move rapidly past lesions, the forks should be symmetrically located. A large fraction of the simian virus 40 replication forks in irradiated molecules were asymmetrically located, demonstrating that UV lesions present at the frequency of pyrimidine dimers block replication forks. As a mechanism for this fork blockage, we propose that polymerization of the leading strand makes a significant contribution to the energetics of fork movement, so any lesion in the template for the leading strand which blocks polymerization should also block fork movement

Autonomous model protocell division driven by molecular replication.

Science.gov (United States)

Taylor, J W; Eghtesadi, S A; Points, L J; Liu, T; Cronin, L

2017-08-10

The coupling of compartmentalisation with molecular replication is thought to be crucial for the emergence of the first evolvable chemical systems. Minimal artificial replicators have been designed based on molecular recognition, inspired by the template copying of DNA, but none yet have been coupled to compartmentalisation. Here, we present an oil-in-water droplet system comprising an amphiphilic imine dissolved in chloroform that catalyses its own formation by bringing together a hydrophilic and a hydrophobic precursor, which leads to repeated droplet division. We demonstrate that the presence of the amphiphilic replicator, by lowering the interfacial tension between droplets of the reaction mixture and the aqueous phase, causes them to divide. Periodic sampling by a droplet-robot demonstrates that the extent of fission is increased as the reaction progresses, producing more compartments with increased self-replication. This bridges a divide, showing how replication at the molecular level can be used to drive macroscale droplet fission.Coupling compartmentalisation and molecular replication is essential for the development of evolving chemical systems. Here the authors show an oil-in-water droplet containing a self-replicating amphiphilic imine that can undergo repeated droplet division.

Initiation preference at a yeast origin of replication.

Science.gov (United States)

Brewer, B J; Fangman, W L

1994-04-12

Replication origins in the yeast Saccharomyces cerevisiae are identified as autonomous replication sequence (ARS) elements. To examine the effect of origin density on replication initiation, we have analyzed the replication of a plasmid that contains two copies of the same origin, ARS1. The activation of origins and the direction that replication forks move through flanking sequences can be physically determined by analyzing replication intermediates on two-dimensional agarose gels. We find that only one of the two identical ARSs on the plasmid initiates replication on any given plasmid molecule; that is, this close spacing of ARSs results in an apparent interference between the potential origins. Moreover, in the particular plasmid that we constructed, one of the two identical copies of ARS1 is used four times more frequently than the other one. These results show that the plasmid context is critical for determining the preferred origin. This origin preference is also exhibited when the tandem copies of ARS1 are introduced into a yeast chromosome. The sequences responsible for establishing the origin preference have been identified by deletion analysis and are found to reside in a portion of the yeast URA3 gene.

Gene organization inside replication domains in mammalian genomes