WorldWideScience

Sample records for reniforme zygnematophyceae streptophyta

  1. Nitrogen limitation and slow drying induce desiccation tolerance in conjugating green algae (Zygnematophyceae, Streptophyta from polar habitats.

    Directory of Open Access Journals (Sweden)

    Martina Pichrtová

    Full Text Available Filamentous Zygnematophyceae are typical components of algal mats in the polar hydro-terrestrial environment. Under field conditions, they form senescent vegetative cells, designated as pre-akinetes, which are tolerant to desiccation and osmotic stress.Pre-akinete formation and desiccation tolerance was investigated experimentally under monitored laboratory conditions in four strains of Arctic and Antarctic isolates with vegetative Zygnema sp. morphology. Phylogenetic analyses of rbcL sequences revealed one Arctic strain as genus Zygnemopsis, phylogenetically distant from the closely related Zygnema strains. Algae were cultivated in liquid or on solidified medium (9 weeks, supplemented with or lacking nitrogen. Nitrogen-free cultures (liquid as well as solidified consisted of well-developed pre-akinetes after this period. Desiccation experiments were performed at three different drying rates (rapid: 10% relative humidity, slow: 86% rh and very slow; viability, effective quantum yield of PS II, visual and ultrastructural changes were monitored. Recovery and viability of pre-akinetes were clearly dependent on the drying rate: slower desiccation led to higher levels of survival. Pre-akinetes survived rapid drying after acclimation by very slow desiccation.The formation of pre-akinetes in polar Zygnema spp. and Zygnemopsis sp. is induced by nitrogen limitation. Pre-akinetes, modified vegetative cells, rather than specialized stages of the life cycle, can be hardened by mild desiccation stress to survive rapid drying. Naturally hardened pre-akinetes play a key role in stress tolerance and dispersal under the extreme conditions of polar regions, where sexual reproduction and production of dormant stages is largely suppressed.

  2. Identification of the relationship between Chinese Adiantum reniforme var. sinense and Canary Adiantum reniforme.

    Science.gov (United States)

    Wang, Ai-Hua; Sun, Ye; Schneider, Harald; Zhai, Jun-Wen; Liu, Dong-Ming; Zhou, Jin-Song; Xing, Fu-Wu; Chen, Hong-Feng; Wang, Fa-Guo

    2015-02-05

    There are different opinions about the relationship of two disjunctively distributed varieties Adiantum reniforme L. var. sinense Y.X.Lin and Adiantum reniforme L. Adiantum reniforme var. sinense is an endangered fern only distributed in a narrowed region of Chongqing city in China, while Adiantum reniforme var. reniforme just distributed in Canary Islands and Madeira off the north-western African coast. To verify the relationship of these two taxa, relative phylogenetic analyses, karyotype analyses, microscopic spore observations and morphological studies were performed in this study. Besides, divergence time between A. reniforme var. sinense and A. reniforme var. reniforme was estimated using GTR model according to a phylogeny tree constructed with the three cpDNA markers atpA, atpB, and rbcL. Phylogenetic results and divergence time analyses--all individuals of A. reniforme var. sinense from 4 different populations (representing all biogeographic distributions) were clustered into one clade and all individuals of A. reniforme var. reniforme from 7 different populations (all biogeographic distributions are included) were clustered into another clade. The divergence between A. reniforme var. reniforme and A. reniforme var. sinense was estimated to be 4.94 (2.26-8.66) Myr. Based on karyotype analyses, A. reniforme var. reniforme was deduced to be hexaploidy with 2n = 180, X = 30, while A. reniforme var. sinense was known as tetraploidy. Microscopic spore observations suggested that surface ornamentation of A. reniforme var. reniforme is psilate, but that of A. reniforme var. sinense is rugate. Leaf blades of A. reniforme var. sinense are membranous and reniform and with several obvious concentric rings, and leaves of A. reniforme var. reniforme are pachyphyllous and coriaceous and are much rounder and similar to palm. Adiantum reniforme var. sinense is an independent species rather than the variety of Adiantum reniforme var. reniforme. As a result, we

  3. Nitrogen Limitation and Slow Drying Induce Desiccation Tolerance in Conjugating Green Algae (Zygnematophyceae, Streptophyta) from Polar Habitats

    Czech Academy of Sciences Publication Activity Database

    Pichrtová, Martina; Kulichová, J.; Holzinger, A.

    2014-01-01

    Roč. 9, č. 11 (2014), č. článku e113137. E-ISSN 1932-6203 Institutional support: RVO:67985939 Keywords : Biological soil crust * High-alpine habitat * land plants Subject RIV: EH - Ecology, Behaviour OBOR OECD: Ecology Impact factor: 3.234, year: 2014

  4. [A survey on ecological environment of wild Adiantum reniforme var. sinense in Three Gorges Reservoir region].

    Science.gov (United States)

    Xie, Zhong-de; Jia, Han; Fu, Shao-Zhi; Gao, Wen-Yuan; Zhang, Zhi-Wei; Sun, Wei

    2017-11-01

    The study aims at investigating the ecological environment Adiantum reniforme var. sinense of in Three Gorges Reservoir region, and providing a reference basis for the protection of resources and artificial cultivation of A. reniforme var. sinense. By using the method of investigation, field survey and experimental analysis, the vegetation, natural geographical environment, climate, soil nutrients of A. reniforme var. sinense were studied and analyzed. The survey found that A. reniforme var. sinense distribution area reduced fast in Three Gorges region, a lot of distribution has diminished and vanished due to excessive digging, currently only in 3 towns of Wanzhou there exist 4 wild distribution areas. The growth of A. reniforme var. sinense needs an environment with low altitude, steep slope and thin soil, northeast slope, canopy height and warm and humid climate characteristics, and the soil in distribution has the characteristics of high organic matter, available nitrogen, available potassium, and low available phosphorus content. Copyright© by the Chinese Pharmaceutical Association.

  5. Responses of reniform nematode and browntop millet to tillage, cover crop, and herbicides in cotton

    Science.gov (United States)

    Cropping practices that reduce competition from reniform nematode (Rotylenchulus reniformis) and browntop millet (Urochlora ramosum) may help minimize losses in cotton (Gossypium hirsutum). The impacts of tillage, rye cover crop, and preemergence and postemergence herbicides on cotton yields, renifo...

  6. Two simple methods for the collection of individual life stages of reniform nematode, Rotylenchulus reniformis

    Science.gov (United States)

    The sedentary semi-endoparasitic nematode Rotylenchulus reniformis, the reniform nematode, is a serious pest of cotton and soybean in the United States. In recent years, interest in the molecular biology of the interaction between R. reniformis and its plant hosts has increased; however, the unusual...

  7. Transcriptome Analysis of Cotton (Gossypium hirsutum L. Genotypes That Are Susceptible, Resistant, and Hypersensitive to Reniform Nematode (Rotylenchulus reniformis.

    Directory of Open Access Journals (Sweden)

    Ruijuan Li

    Full Text Available Reniform nematode is a semi-endoparasitic nematode species causing significant yield loss in numerous crops, including cotton (Gossypium hirsutum L.. An RNA-sequencing analysis was conducted to measure transcript abundance in reniform nematode susceptible (DP90 & SG747, resistant (BARBREN-713, and hypersensitive (LONREN-1 genotypes of cotton (Gossypium hirsutum L. with and without reniform nematode infestation. Over 90 million trimmed high quality reads were assembled into 84,711 and 80, 353 transcripts using the G. arboreum and the G. raimondii genomes as references. Many transcripts were significantly differentially expressed between the three different genotypes both prior to and during nematode pathogenesis, including transcripts corresponding to the gene ontology categories of cell wall, hormone metabolism and signaling, redox reactions, secondary metabolism, transcriptional regulation, stress responses, and signaling. Further analysis revealed that a number of these differentially expressed transcripts mapped to the G. raimondii and/or the G. arboreum genomes within 1 megabase of quantitative trait loci that had previously been linked to reniform nematode resistance. Several resistance genes encoding proteins known to be strongly linked to pathogen perception and resistance, including LRR-like and NBS-LRR domain-containing proteins, were among the differentially expressed transcripts mapping near these quantitative trait loci. Further investigation is required to confirm a role for these transcripts in reniform nematode susceptibility, hypersensitivity, and/or resistance. This study presents the first systemic investigation of reniform nematode resistance-associated genes using different genotypes of cotton. The candidate reniform nematode resistance-associated genes identified in this study can serve as the basis for further functional analysis and aid in further development of reniform a nematode resistant cotton germplasm.

  8. Novas ocorrências de desmídias filamentosas (Desmidiaceae, Zygnematophyceae para o estado da Bahia, Brasil New records of filamentous desmids (Desmidiaceae, Zygnematophyceae from Bahia state, Brazil

    Directory of Open Access Journals (Sweden)

    Ivania Batista de Oliveira

    2010-12-01

    Full Text Available As desmídias de hábito filamentos são constituídas por filamentos de células relativamente curtos, que se dissociam com certa facilidade. O conhecimento destas algas no estado da Bahia é bastante escasso, até o momento, estando restrito a 13 táxons. O presente trabalho teve por objetivo realizar o inventário taxonômico dos gêneros filamentosos da família Desmidiaceae (Zygnematophyceae, de duas áreas de proteção ambiental, APA Rio Capivara e APA Lagoas de Guarajuba, município de Camaçari, a fim de ampliar o conhecimento destes na Bahia. Foram analisadas 33 amostras coletadas de acordo com os métodos usuais empregados nos estudos de taxonomia de microalgas continentais. Foram identificados 15 táxons distribuídos em sete gêneros (Bambusina Kütz. ex Kütz, Desmidium C.Agardh ex Ralfs, Groenbladia Teiling, Hyalotheca Ehrenb. ex Ralfs, Onychonema Wallich, Spondylosium Bréb. ex Kütz. e Teilingia Bourr., dos quais nove táxons constituem-se adições à flora de algas continentais da Bahia, aumentando o total de espécies conhecidas para 22.The filamentous desmids are composed of relatively short filaments of cells that dissociate rather easily. These algae are poorly known today in the state of Bahia, being restricted to 13 taxa. This study aimed to do a taxonomic inventory of filamentous genera of the family Desmidiaceae (Zygnematophyceae from two environmental protection areas, Rio Capivara and Lagoas de Guarajuba, Camaçari municipality, to increase our knowledge of these organisms in Bahia. We analyzed 33 samples collected according to the methods employed in studies of continental microalgae taxonomy. 15 taxa were recorded, distributed in seven genera: Bambusina Kütz. ex Kütz, Desmidium C.Agardh ex Ralfs, Groenbladia Teiling, Hyalotheca Ehrenb. ex Ralfs, Onychonema Wallich, Spondylosium Bréb. ex Kütz. and Teilingia Bourr. Of these, nine are additions to the algal flora of continental Bahia, increasing the total to 22

  9. EST analysis of the scaly green flagellate Mesostigma viride (Streptophyta: Implications for the evolution of green plants (Viridiplantae

    Directory of Open Access Journals (Sweden)

    Melkonian Michael

    2006-02-01

    Full Text Available Abstract Background The Viridiplantae (land plants and green algae consist of two monophyletic lineages, the Chlorophyta and the Streptophyta. The Streptophyta include all embryophytes and a small but diverse group of freshwater algae traditionally known as the Charophyceae (e.g. Charales, Coleochaete and the Zygnematales. The only flagellate currently included in the Streptophyta is Mesostigma viride Lauterborn. To gain insight into the genome evolution in streptophytes, we have sequenced 10,395 ESTs from Mesostigma representing 3,300 independent contigs and compared the ESTs of Mesostigma with available plant genomes (Arabidopsis, Oryza, Chlamydomonas, with ESTs from the bryophyte Physcomitrella, the genome of the rhodophyte Cyanidioschyzon, the ESTs from the rhodophyte Porphyra, and the genome of the diatom Thalassiosira. Results The number of expressed genes shared by Mesostigma with the embryophytes (90.3 % of the expressed genes showing similarity to known proteins is higher than with Chlamydomonas (76.1 %. In general, cytosolic metabolic pathways, and proteins involved in vesicular transport, transcription, regulation, DNA-structure and replication, cell cycle control, and RNA-metabolism are more conserved between Mesostigma and the embryophytes than between Mesostigma and Chlamydomonas. However, plastidic and mitochondrial metabolic pathways, cytoskeletal proteins and proteins involved in protein folding are more conserved between Mesostigma and Chlamydomonas than between Mesostigma and the embryophytes. Conclusion Our EST-analysis of Mesostigma supports the notion that this organism should be a suitable unicellular model for the last flagellate common ancestor of the streptophytes. Mesostigma shares more genes with the embryophytes than with the chlorophyte Chlamydomonas reinhardtii, although both organisms are flagellate unicells. Thus, it seems likely that several major physiological changes (e.g. in the regulation of photosynthesis

  10. A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies

    Directory of Open Access Journals (Sweden)

    Turmel Monique

    2007-01-01

    Full Text Available Abstract Background The Viridiplantae comprise two major phyla: the Streptophyta, containing the charophycean green algae and all land plants, and the Chlorophyta, containing the remaining green algae. Despite recent progress in unravelling phylogenetic relationships among major green plant lineages, problematic nodes still remain in the green tree of life. One of the major issues concerns the scaly biflagellate Mesostigma viride, which is either regarded as representing the earliest divergence of the Streptophyta or a separate lineage that diverged before the Chlorophyta and Streptophyta. Phylogenies based on chloroplast and mitochondrial genomes support the latter view. Because some green plant lineages are not represented in these phylogenies, sparse taxon sampling has been suspected to yield misleading topologies. Here, we describe the complete chloroplast DNA (cpDNA sequence of the early-diverging charophycean alga Chlorokybus atmophyticus and present chloroplast genome-based phylogenies with an expanded taxon sampling. Results The 152,254 bp Chlorokybus cpDNA closely resembles its Mesostigma homologue at the gene content and gene order levels. Using various methods of phylogenetic inference, we analyzed amino acid and nucleotide data sets that were derived from 45 protein-coding genes common to the cpDNAs of 37 green algal/land plant taxa and eight non-green algae. Unexpectedly, all best trees recovered a robust clade uniting Chlorokybus and Mesostigma. In protein trees, this clade was sister to all streptophytes and chlorophytes and this placement received moderate support. In contrast, gene trees provided unequivocal support to the notion that the Mesostigma + Chlorokybus clade represents the earliest-diverging branch of the Streptophyta. Independent analyses of structural data (gene content and/or gene order and of subsets of amino acid data progressively enriched in slow-evolving sites led us to conclude that the latter topology

  11. UV-induced effects on growth, photosynthetic performance and sunscreen contents in different populations of the green alga Klebsormidium fluitans (Streptophyta) from alpine soil crusts.

    Science.gov (United States)

    Kitzing, C; Pröschold, T; Karsten, U

    2014-02-01

    Members of the green algal genus Klebsormidium (Klebsormidiales, Streptophyta) are typical components of biological soil crust communities worldwide, which exert important ecological functions. Klebsormidium fluitans (F. Gay) Lokhorst was isolated from an aeroterrestrial biofilm as well as from four different biological soil crusts along an elevational gradient between 600 and 2350 m in the Tyrolean and South Tyrolean Alps (Austria, Italy), which are characterised by seasonally high solar radiation. Since the UVtolerance of Klebsormidium has not been studied in detail, an ecophysiological and biochemical study was applied. The effects of controlled artificial ultraviolet radiation (UVR; sampling location. All data indicate a generally high UV tolerance which surely contributes to the aeroterrestrial lifestyle of K. fluitans in soil crusts of the alpine regions of the European Alps.

  12. Molecular and Morphological Characterization and Biological Control Capabilities of a Pasteuria ssp. Parasitizing Rotylenchulus reniformis, the Reniform Nematode.

    Science.gov (United States)

    Schmidt, Liesbeth M; Hewlett, Thomas E; Green, April; Simmons, Lee J; Kelley, Karen; Doroh, Mark; Stetina, Salliana R

    2010-09-01

    Rotylenchulus reniformis is one of 10 described species of reniform nematodes and is considered the most economically significant pest within the genus, parasitizing a variety of important agricultural crops. Rotylenchulus reniformis collected from cotton fields in the Southeastern US were observed to have the nematode parasitic bacterium Pasteuria attached to their cuticles. Challenge with a Pasteuria-specific monoclonal antibody in live immuno-fluorescent assay (IFA) confirmed the discovery of Pasteuria infecting R. reniformis. Scanning and transmission electron microscopy were employed to observe endospore ultrastructure and sporogenesis within the host. Pasteuria were observed to infect and complete their life-cycle in juvenile, male and female R. reniformis. Molecular analysis using Pasteuria species-specific and degenerate primers for 16s rRNA and spoII, and subsequent phylogenetic assessment, placed the Pasteuria associated with R. reniformis in a distinct clade within established assemblages for the Pasteuria infecting phytopathogenic nematodes. A global phylogenetic assessment of Pasteuria 16s rDNA using the Neighbor-Joining method resulted in a clear branch with 100% boot-strap support that effectively partitioned the Pasteuria infecting phytopathogenic nematodes from the Pasteuria associated with bacterivorous nematodes. Phylogenetic analysis of the R. reniformis Pasteuria and Pasteuria spp. parasitizing a number of economically important plant parasitic nematodes revealed that Pasteuria with different host specificities are closely related and likely constitute biotypes of the same species. This suggests host preference, and thus effective differentiation and classification are most likely predicated by an influential virulence determinant(s) that has yet to be elucidated. Pasteuria Pr3 endospores produced by in vitro fermentation demonstrated efficacy as a commercial bionematicide to control R. reniformis on cotton in pot tests, when applied as a seed

  13. Rotação e sucessão de culturas para o manejo do nematoide reniforme em área de produção de soja

    Directory of Open Access Journals (Sweden)

    Hugo Márcio Leandro

    2015-06-01

    Full Text Available O nematoide reniforme (Rotylenchulus reniformis tem se tornado crescente problema fitossanitário da cultura da soja. Considerando a limitada disponibilidade de cultivares de soja que aliem resistência ao nematoide a outras características agronômicas desejáveis, estuda-se a possibilidade de utilização de manejo cultural para seu controle. Este trabalho visou avaliar o efeito da rotação de culturas no verão com milho, Crotalaria ochroleuca ou soja; e o manejo de entressafra, com Brachiaria ruziziensis como espécie de cobertura ou pousio. O experimento foi implantado em solo naturalmente infestado pelo nematoide reniforme (1245 nematoides/200cc de solo em delineamento experimental de blocos ao acaso, com quatro repetições, em esquema fatorial 3x2 (cultivos de verão x manejo de entressafra. Foram avaliadas a densidade populacional do nematoide no solo e sua variação durante as safras e entressafras, bem como a produtividade da soja na safra subsequente à rotação de culturas. Não houve efeito do manejo da entressafra com braquiária sobre o nematoide. A rotação de culturas com milho ou crotalária no verão propiciou redução da densidade populacional do nematoide reniforme em comparação ao monocultivo de soja, com reflexos positivos sobre a produtividade de soja na safra seguinte

  14. Evolutionarily distant streptophyta respond differently to genotoxic stress

    Czech Academy of Sciences Publication Activity Database

    Vágnerová, Radka; Lukešová, Alena; Lukeš, Martin; Rožnovská, Petra; Holá, Marcela; Fulnečková, Jana; Fajkus, J.; Angelis, Karel

    2017-01-01

    Roč. 8, č. 11 (2017), č. článku 331. ISSN 2073-4425 R&D Projects: GA ČR GA16-01137S; GA MŠk(CZ) LQ1601; GA MŠk LTC17047 Institutional support: RVO:61389030 ; RVO:60077344 ; RVO:61388971 ; RVO:68081707 Keywords : Bleomycin * DNA damage and repair * Klebsormidium * Methyl methanesulfonate * Physcomitrella patens * Ultraviolet light * Zygnema Subject RIV: EB - Genetics ; Molecular Biology OBOR OECD: Plant sciences, botany Impact factor: 3.600, year: 2016

  15. Biological Soil Crusts of Arctic Svalbard—Water Availability as Potential Controlling Factor for Microalgal Biodiversity

    Directory of Open Access Journals (Sweden)

    Nadine Borchhardt

    2017-08-01

    Full Text Available In the present study the biodiversity of biological soil crusts (BSCs formed by phototrophic organisms were investigated on Arctic Svalbard (Norway. These communities exert several important ecological functions and constitute a significant part of vegetation at high latitudes. Non-diatom eukaryotic microalgal species of BSCs from 20 sampling stations around Ny-Ålesund and Longyearbyen were identified by morphology using light microscopy, and the results revealed a high species richness with 102 species in total. 67 taxa belonged to Chlorophyta (31 Chlorophyceae and 36 Trebouxiophyceae, 13 species were Streptophyta (11 Klebsormidiophyceae and two Zygnematophyceae and 22 species were Ochrophyta (two Eustigmatophyceae and 20 Xanthophyceae. Surprisingly, Klebsormidium strains belonging to clade G (Streptophyta, which were so far described from Southern Africa, could be determined at 5 sampling stations. Furthermore, comparative analyses of Arctic and Antarctic BSCs were undertaken to outline differences in species composition. In addition, a pedological analysis of BSC samples included C, N, S, TP (total phosphorus, and pH measurements to investigate the influence of soil properties on species composition. No significant correlation with these chemical soil parameters was confirmed but the results indicated that pH might affect the BSCs. In addition, a statistically significant influence of precipitation on species composition was determined. Consequently, water availability was identified as one key driver for BSC biodiversity in Arctic regions.

  16. Biological Soil Crusts of Arctic Svalbard-Water Availability as Potential Controlling Factor for Microalgal Biodiversity.

    Science.gov (United States)

    Borchhardt, Nadine; Baum, Christel; Mikhailyuk, Tatiana; Karsten, Ulf

    2017-01-01

    In the present study the biodiversity of biological soil crusts (BSCs) formed by phototrophic organisms were investigated on Arctic Svalbard (Norway). These communities exert several important ecological functions and constitute a significant part of vegetation at high latitudes. Non-diatom eukaryotic microalgal species of BSCs from 20 sampling stations around Ny-Ålesund and Longyearbyen were identified by morphology using light microscopy, and the results revealed a high species richness with 102 species in total. 67 taxa belonged to Chlorophyta (31 Chlorophyceae and 36 Trebouxiophyceae), 13 species were Streptophyta (11 Klebsormidiophyceae and two Zygnematophyceae) and 22 species were Ochrophyta (two Eustigmatophyceae and 20 Xanthophyceae). Surprisingly, Klebsormidium strains belonging to clade G (Streptophyta), which were so far described from Southern Africa, could be determined at 5 sampling stations. Furthermore, comparative analyses of Arctic and Antarctic BSCs were undertaken to outline differences in species composition. In addition, a pedological analysis of BSC samples included C, N, S, TP (total phosphorus), and pH measurements to investigate the influence of soil properties on species composition. No significant correlation with these chemical soil parameters was confirmed but the results indicated that pH might affect the BSCs. In addition, a statistically significant influence of precipitation on species composition was determined. Consequently, water availability was identified as one key driver for BSC biodiversity in Arctic regions.

  17. Diversity and dispersal capacities of a terrestrial algal genus Klebsormidium (Streptophyta) in polar regions

    Czech Academy of Sciences Publication Activity Database

    Ryšánek, D.; Elster, Josef; Kováčik, L.; Škaloud, P.

    2016-01-01

    Roč. 92, č. 4 (2016), s. 1-9, č. článku fiw039. ISSN 0168-6496 Institutional support: RVO:67985939 Keywords : genetic diversity * Klebsormidium * phylogeography * polar regions Subject RIV: EH - Ecology , Behaviour Impact factor: 3.720, year: 2016

  18. DNA content variation and its significance in the evolution of the genus Micrasterias (Desmidiales, Streptophyta.

    Directory of Open Access Journals (Sweden)

    Aloisie Poulíčková

    Full Text Available It is now clear that whole genome duplications have occurred in all eukaryotic evolutionary lineages, and that the vast majority of flowering plants have experienced polyploidisation in their evolutionary history. However, study of genome size variation in microalgae lags behind that of higher plants and seaweeds. In this study, we have addressed the question whether microalgal phylogeny is associated with DNA content variation in order to evaluate the evolutionary significance of polyploidy in the model genus Micrasterias. We applied flow-cytometric techniques of DNA quantification to microalgae and mapped the estimated DNA content along the phylogenetic tree. Correlations between DNA content and cell morphometric parameters were also tested using geometric morphometrics. In total, DNA content was successfully determined for 34 strains of the genus Micrasterias. The estimated absolute 2C nuclear DNA amount ranged from 2.1 to 64.7 pg; intraspecific variation being 17.4-30.7 pg in M. truncata and 32.0-64.7 pg in M. rotata. There were significant differences between DNA contents of related species. We found strong correlation between the absolute nuclear DNA content and chromosome numbers and significant positive correlation between the DNA content and both cell size and number of terminal lobes. Moreover, the results showed the importance of cell/life cycle studies for interpretation of DNA content measurements in microalgae.

  19. The green alga Zygogonium ericetorum (Zygnematophyceae, Charophyta) shows high iron and aluminium tolerance: protection mechanisms and photosynthetic performance.

    Science.gov (United States)

    Herburger, Klaus; Remias, Daniel; Holzinger, Andreas

    2016-08-01

    Streptophyte green algae, ancestors of Embryophytes, occur frequently in terrestrial habitats being exposed to high light intensities, water scarcity and potentially toxic metal cations under acidic conditions. The filamentous Zygogonium ericetorum synthesizes a purple vacuolar ferrous pigment, which is lost after aplanospore formation. However, it is unknown whether this cellular reorganization also removes excessive iron from the protoplast and how Z. ericetorum copes with high concentrations of aluminium. Here we show that aplanospore formation shifts iron into the extracellular space of the algal filament. Upon germination of aplanospores, aluminium is bound in the parental cell wall. Both processes reduce iron and aluminium in unpigmented filaments. Comparison of the photosynthetic oxygen production in response to light and temperature gradients in two different Z. ericetorum strains from an Austrian alpine and a Scottish highland habitat revealed lower values in the latter strain. In contrast, the Scottish strain showed a higher optimum quantum yield of PSII during desiccation stress followed by rehydration. Furthermore, pigmented filaments of both strains exhibited a higher light and temperature dependent oxygen production when compared to the unpigmented phenotype. Our results demonstrate a high metal tolerance of Z. ericetorum, which is crucial for surviving in acidic terrestrial habitats. © FEMS 2016.

  20. Efficiency of green manure species on the population of reniform nematode

    Directory of Open Access Journals (Sweden)

    Cristiane Gonçalves Gardiano

    2014-02-01

    Full Text Available The objective of this study was to evaluate the growing of soil improving crops on the population of Rotylenchulus reniformis in naturally infested soil. It was evaluated the effect of 6 species of plants as cover crops in winter and 13 summer species and a fallow treatment on the nematode population under greenhouse. After 60 days, the root system was collected. Then, a sample of soil was taken in order to extract juveniles from the soil and quantification the final population of the pathogen in each pot for determining of the reproduction factor (RF. Fallow and all winter species of green manure, except hairy vetch, reduced the population of R. reniformis after cultivation in infested soil, in comparison to the control. Regarding summer cover crops, it was observed that sorghum ‘SI03204’ (Sorghum vulgare, millet ‘BRS1501’ (Pennisetum glaucum, Brachiaria ruziziensis, finger millet (Eleusine coracana, estylo ‘Campo Grande’ (Stylosanthes capitata x S. macrocephala, peanut ‘IAC Tatu ST’ (Arachis hypogaea and dwarf velvet bean (Mucuna deeringiana reduced the population of R. reniformis, when compared to the control, could be used in the management of this nematode.

  1. Resistance and Resistant Reaction of Gossypium arboreum to the Reniform, Nematode, Rotylenchulus reniformis

    Science.gov (United States)

    Carter, William W.

    1981-01-01

    Gossypium arboreum 'Nanking CB 1402' possessed a high level of resistance to Rotylenchulus reniformis. Within 16 h, the nematode penetrated roots of resistant and susceptible cottons equally. After 36 h, significantly fewer nematodes were found in resistant roots. Larvae fed in either an endodermal or pericyclic cell and had no specificity for root tissue of a particular age. In roots of resistant G. arboreum '1402,' wall breakdown of pericyclic cells was evident after 3 d, endodermal and cortical cells collapsed, and the hypertrophied pericyclic cells disintegrated within 12 d. Cell walls immediately adjacent to the nematode's head were thickened and more safranin positive in resistant than in susceptible cotton cultivars. Several other cultivars of G. arboreum were also resistant to R. reniformis, based on nematode fecundity and percent egg reduction. PMID:19300777

  2. Transcriptional analysis of cell growth and morphogenesis in the unicellular green alga Micrasterias (Streptophyta, with emphasis on the role of expansin

    Directory of Open Access Journals (Sweden)

    Leliaert Frederik

    2011-09-01

    Full Text Available Abstract Background Streptophyte green algae share several characteristics of cell growth and cell wall formation with their relatives, the embryophytic land plants. The multilobed cell wall of Micrasterias denticulata that rebuilds symmetrically after cell division and consists of pectin and cellulose, makes this unicellular streptophyte alga an interesting model system to study the molecular controls on cell shape and cell wall formation in green plants. Results Genome-wide transcript expression profiling of synchronously growing cells identified 107 genes of which the expression correlated with the growth phase. Four transcripts showed high similarity to expansins that had not been examined previously in green algae. Phylogenetic analysis suggests that these genes are most closely related to the plant EXPANSIN A family, although their domain organization is very divergent. A GFP-tagged version of the expansin-resembling protein MdEXP2 localized to the cell wall and in Golgi-derived vesicles. Overexpression phenotypes ranged from lobe elongation to loss of growth polarity and planarity. These results indicate that MdEXP2 can alter the cell wall structure and, thus, might have a function related to that of land plant expansins during cell morphogenesis. Conclusions Our study demonstrates the potential of M. denticulata as a unicellular model system, in which cell growth mechanisms have been discovered similar to those in land plants. Additionally, evidence is provided that the evolutionary origins of many cell wall components and regulatory genes in embryophytes precede the colonization of land.

  3. Molecular evidence for the polyphyletic origin of low pH adaptation in the genus .i.Klebsormidium./i. (Klebsormidiophyceae, Streptophyta)

    Czech Academy of Sciences Publication Activity Database

    Škaloud, P.; Lukešová, Alena; Malavasi, V.; Ryšánek, D.; Hrčková, Kristýna; Rindi, F.

    2014-01-01

    Roč. 147, č. 3 (2014), s. 333-345 ISSN 2032-3913 Institutional support: RVO:60077344 Keywords : acid mine drainage * acid ophilic algae * acid otolerant algae * extremophiles * molecular systematics * taxonomy Subject RIV: EF - Botanics Impact factor: 0.986, year: 2014

  4. Terestrické řasy rodu Klebsormidium (Streptophyta) ve světle hypotézy "Everything is everywhere, but the environment selects"

    OpenAIRE

    Ryšánek, David

    2016-01-01

    In 1934, Baas Becking mentioned hypothesis "Everything is everywhere, but the environment selects", which still contains three current controversial issues in protists: (1) disunity in distribution patterns, (2) species concepts, and (3) the ecological preferences. In recent years, protistan biogeography and diversity has become a highly debated topic. Two opposite hypotheses have been proposed: the ubiquity model, which emphasizes the cosmopolitan distribution of protists with low global div...

  5. Stress resistance of single stock cultures of filamentous green algae from the genus Klebsormidium (Streptophyta) isolated from the polar regions and from Slovakia; Stresova rezistencia jednodruhovych kmenovych kultur vlaknitej zelenej riasy z rodu Klebsormidium (Streptophyta) izolovanych z polarnych oblasti a zo Slovenska

    Energy Technology Data Exchange (ETDEWEB)

    Segecova, J; Kovacik, L [Univerzita Komenskeho v Bratislave, Prirodovedecka fakulta, Katedra botaniky, 81102 Bratislava (Slovakia); Elster, J [Centrum polarni ekologie, Prirodovedecka fakulta, Jihoceska Universita, 37005 Ceske Budejovice (Czech Republic)

    2012-04-25

    Single-fiber stem cultures of green algae of the genus Klebsormidium PC Silva, K. R. Mattox et W.H. Blackwell isolated from the both polar regions and from Slovakia were subjected to the effects of the environmental stress including various options of dessication and freezing. Klebsormidium algae species has a wide ecological amplitude and equally broad biological plasticity that allows it to adapt and survive in adverse environmental conditions. Based on the performed microscopic analyses of algaes after exposure to stressors, the experimental strains were generally the most resistant to the slow and rapid freezing. Exposure of the strains to lyophilization was shown as the most drastic stress factor of all, to who were the most resistant arctic strains 9 LUC, LUC 11, LUC 14 as well as MON 1 strain from Slovakia and LUC strain 8 of Antarctica. The least resistant to environmental stress were two Antarctic strains LUC LUC 4 and 5. However, we can not explain it yet and it will be the subject of the further study. (authors)

  6. Reproduction and pathogenicity of endemic populations of Rotylenchulus reniformis on cotton

    Science.gov (United States)

    The reniform nematode (Rotylenchulus reniformis) is the predominant parasitic nematode of upland cotton (Gossypium hirsutum) in the southern United States. Little is known about variability in geographic isolates of reniform nematode. In order to evaluate the comparative reproduction and pathogenici...

  7. Identification of Pasteuria spp. that parasitize Rotylenchulus reniformis

    Science.gov (United States)

    Reniform nematodes (Rotylenchulus reniformis) collected from cotton research plots in Quincy, Florida, a commercial field in Huxford, Alabama, and multiple west central Mississippi cotton farms were observed to have Pasteuria-like spores attached to their cuticles. Reniform nematodes with spores at...

  8. Gain and loss of polyadenylation signals during evolution of green algae

    OpenAIRE

    Wodniok, Sabina; Simon, Andreas; Glöckner, Gernot; Becker, Burkhard

    2007-01-01

    Abstract Background The Viridiplantae (green algae and land plants) consist of two monophyletic lineages: the Chlorophyta and the Streptophyta. Most green algae belong to the Chlorophyta, while the Streptophyta include all land plants and a small group of freshwater algae known as Charophyceae. Eukaryotes attach a poly-A tail to the 3' ends of most nuclear-encoded mRNAs. In embryophytes, animals and fungi, the signal for polyadenylation contains an A-rich sequence (often AAUAAA or related seq...

  9. Rotylenchulus reniformis on Greenhouse-grown Foliage Plants: Host Range and Sources of Inoculum.

    Science.gov (United States)

    Starr, J L

    1991-10-01

    Two sources of inoculum of reniform nematodes, Rotylenchulus reniformis, were identified for infestation of ornamental foliage plants in commercial greenhouses. These were water from a local canal system and rooted cuttings purchased from other sources. Eight ornamental plant species were identified as good hosts for the reniform nematode, with each species supporting a reniform population density equal to or greater than that supported by 'Rutgers' tomato and a reproduction factor of greater than 1.0. Nine other plant species were identified as poor hosts.

  10. Intraspecific Variability of Rotylenchulus reniformis from Cotton-growing Regions in the United States

    OpenAIRE

    Agudelo, Paula; Robbins, Robert T.; Stewart, James McD.; Szalanski, Allen L.

    2005-01-01

    Reniform nematode (Rotylenchulus reniformis) is a major pest of cotton in the southeastern United States. The objective of this study was to examine the variation of reniform nematode populations from cotton-growing locations in the United States where it is prevalent. Multivariate analysis of variance and discriminant analysis were used to determine the variability of morphology in males and immature females. Reproduction indices of populations were measured on selected soybean and cotton ge...

  11. Prevalence of Pasteuria SP. on Renfirom Nematode in a Georgia Cotton Field

    Science.gov (United States)

    Pasteuria species are bacterial parasites of nematodes and have been associated with suppression of root-knot, sting, and cyst nematode populations. Little is known about the Pasteuria sp. infecting the reniform nematode. While sampling a cotton field study near Cochran, GA, we found Pasteuria spo...

  12. Rate of germination and growth of in vitro produced Pasteuria spp. parasitizing Rotylenchulus reniformis

    Science.gov (United States)

    Reniform nematodes (Rotylenchulus reniformis) from pot culture were attached with in vitro produced Pasteuria spp. spores using a centrifuge attachment technique that resulted in 40-50% of the vermiform nematodes with spores adhering to their cuticles. Attached nematodes were placed into small plast...

  13. Nuclear ribosomal DNA diversity of a cotton pest ( Rotylenchulus ...

    African Journals Online (AJOL)

    The reniform nematode (Rotylenchulus reniformis) has emerged as a major cotton pest in the United States. A recent analysis of over 20 amphimictic populations of this pest from the US and three other countries has shown no sequence variation at the nuclear ribosomal internal transcribed spacer (ITS) despite the region's ...

  14. Three new fern records for Kilimanjaro | Hemp | Journal of East ...

    African Journals Online (AJOL)

    Working on the flora and vegetation of Mt. Kilimanjaro, Tanzania, three ferns in three families were found that are not yet recorded for the floral region T2. The altitudinal range, localities and habitat description are given for Adiantum reniforme, Azolla africana and Trichomanes radicans. Journal of East African Natural History ...

  15. Analyses of charophyte chloroplast genomes help characterize the ancestral chloroplast genome of land plants.

    Science.gov (United States)

    Civaň, Peter; Foster, Peter G; Embley, Martin T; Séneca, Ana; Cox, Cymon J

    2014-04-01

    Despite the significance of the relationships between embryophytes and their charophyte algal ancestors in deciphering the origin and evolutionary success of land plants, few chloroplast genomes of the charophyte algae have been reconstructed to date. Here, we present new data for three chloroplast genomes of the freshwater charophytes Klebsormidium flaccidum (Klebsormidiophyceae), Mesotaenium endlicherianum (Zygnematophyceae), and Roya anglica (Zygnematophyceae). The chloroplast genome of Klebsormidium has a quadripartite organization with exceptionally large inverted repeat (IR) regions and, uniquely among streptophytes, has lost the rrn5 and rrn4.5 genes from the ribosomal RNA (rRNA) gene cluster operon. The chloroplast genome of Roya differs from other zygnematophycean chloroplasts, including the newly sequenced Mesotaenium, by having a quadripartite structure that is typical of other streptophytes. On the basis of the improbability of the novel gain of IR regions, we infer that the quadripartite structure has likely been lost independently in at least three zygnematophycean lineages, although the absence of the usual rRNA operonic synteny in the IR regions of Roya may indicate their de novo origin. Significantly, all zygnematophycean chloroplast genomes have undergone substantial genomic rearrangement, which may be the result of ancient retroelement activity evidenced by the presence of integrase-like and reverse transcriptase-like elements in the Roya chloroplast genome. Our results corroborate the close phylogenetic relationship between Zygnematophyceae and land plants and identify 89 protein-coding genes and 22 introns present in the chloroplast genome at the time of the evolutionary transition of plants to land, all of which can be found in the chloroplast genomes of extant charophytes.

  16. The tadpole of Hypsiboas leptolineatus (Braun and Braun, 1977), a species in the Hypsiboas polytaenius clade (Anura; Hylidae)

    OpenAIRE

    Both,C.; Kwet,A.; Solé,M.

    2007-01-01

    The larval morphology of Hypsiboas leptolineatus was studied. The tadpole has an ovoid body in lateral view, wider than deep; snout rounded with dorsal reniform nostrils; spiracle sinistral with lateral wall attached to body; anal tube dextral; tail fins convex with acuminate tip; oral disc ventral; labial tooth row formula is 2(2)/3(1); moderately developed beaks with serrated jaw sheaths. These external oral features are compared with those of the known tadpoles in the Hypsiboas polytaenius...

  17. Gain and loss of polyadenylation signals during evolution of green algae

    Directory of Open Access Journals (Sweden)

    Glöckner Gernot

    2007-04-01

    Full Text Available Abstract Background The Viridiplantae (green algae and land plants consist of two monophyletic lineages: the Chlorophyta and the Streptophyta. Most green algae belong to the Chlorophyta, while the Streptophyta include all land plants and a small group of freshwater algae known as Charophyceae. Eukaryotes attach a poly-A tail to the 3' ends of most nuclear-encoded mRNAs. In embryophytes, animals and fungi, the signal for polyadenylation contains an A-rich sequence (often AAUAAA or related sequence 13 to 30 nucleotides upstream from the cleavage site, which is commonly referred to as the near upstream element (NUE. However, it has been reported that the pentanucleotide UGUAA is used as polyadenylation signal for some genes in volvocalean algae. Results We set out to investigate polyadenylation signal differences between streptophytes and chlorophytes that may have emerged shortly after the evolutionary split between Streptophyta and Chlorophyta. We therefore analyzed expressed genes (ESTs from three streptophyte algae, Mesostigma viride, Klebsormidium subtile and Coleochaete scutata, and from two early-branching chlorophytes, Pyramimonas parkeae and Scherffelia dubia. In addition, to extend the database, our analyses included ESTs from six other chlorophytes (Acetabularia acetabulum, Chlamydomonas reinhardtii, Helicosporidium sp. ex Simulium jonesii, Prototheca wickerhamii, Scenedesmus obliquus and Ulva linza and one streptophyte (Closterium peracerosum. Our results indicate that polyadenylation signals in green algae vary widely. The UGUAA motif is confined to late-branching Chlorophyta. Most streptophyte algae do not have an A-rich sequence motif like that in embryophytes, animals and fungi. We observed polyadenylation signals similar to those of Arabidopsis and other land plants only in Mesostigma. Conclusion Polyadenylation signals in green algae show considerable variation. A new NUE (UGUAA was invented in derived chlorophytes and replaced

  18. Gain and loss of polyadenylation signals during evolution of green algae.

    Science.gov (United States)

    Wodniok, Sabina; Simon, Andreas; Glöckner, Gernot; Becker, Burkhard

    2007-04-18

    The Viridiplantae (green algae and land plants) consist of two monophyletic lineages: the Chlorophyta and the Streptophyta. Most green algae belong to the Chlorophyta, while the Streptophyta include all land plants and a small group of freshwater algae known as Charophyceae. Eukaryotes attach a poly-A tail to the 3' ends of most nuclear-encoded mRNAs. In embryophytes, animals and fungi, the signal for polyadenylation contains an A-rich sequence (often AAUAAA or related sequence) 13 to 30 nucleotides upstream from the cleavage site, which is commonly referred to as the near upstream element (NUE). However, it has been reported that the pentanucleotide UGUAA is used as polyadenylation signal for some genes in volvocalean algae. We set out to investigate polyadenylation signal differences between streptophytes and chlorophytes that may have emerged shortly after the evolutionary split between Streptophyta and Chlorophyta. We therefore analyzed expressed genes (ESTs) from three streptophyte algae, Mesostigma viride, Klebsormidium subtile and Coleochaete scutata, and from two early-branching chlorophytes, Pyramimonas parkeae and Scherffelia dubia. In addition, to extend the database, our analyses included ESTs from six other chlorophytes (Acetabularia acetabulum, Chlamydomonas reinhardtii, Helicosporidium sp. ex Simulium jonesii, Prototheca wickerhamii, Scenedesmus obliquus and Ulva linza) and one streptophyte (Closterium peracerosum). Our results indicate that polyadenylation signals in green algae vary widely. The UGUAA motif is confined to late-branching Chlorophyta. Most streptophyte algae do not have an A-rich sequence motif like that in embryophytes, animals and fungi. We observed polyadenylation signals similar to those of Arabidopsis and other land plants only in Mesostigma. Polyadenylation signals in green algae show considerable variation. A new NUE (UGUAA) was invented in derived chlorophytes and replaced not only the A-rich NUE but the complete poly

  19. Morfología y anatomía del gametofito de Didymochlaena truncatula (Dryopteridaceae

    Directory of Open Access Journals (Sweden)

    Aniceto Mendoza

    1999-06-01

    Full Text Available En este trabajo se presenta el estudio de la fase sexual de Didymochlaena truncatula. Las espora son monoletes con perina, elipsoidales, no clorofílicas. Su germinación es tipo Vittaria y su desarrollo protálico es tipo Adiantum, el gametofito adulto es cordiforme-espatulado a cordiforme-reniforme, no presentan ningún tipo de tricoma, los rizoides no tienen cloroplastos, sus gametangios son del tipo común de los helechos leptosporangiados, las primeras hojas del esporofito se forman después de 100 días de haber sido sembradas las esporas, son de forma espatulada con venación dicotómica y tricomas unicelulares marginales, cortos y capitados.Sexual phase development was studied in Didymochlaena truncatula, on the basis of spores collected in Península Moreno and Tebanca, Catemaco, Veracruz, México. The spores are monolete, ellipsoid, with perine, and non-clorophyllic. The germination pattern is of the Vittaria-type and the prothallial development is of the Adiantum-type, the adult gametophytes are cordiform to reniform and without trichomes; the gametangia are typical of the leptosporangiate ferns. The first leaf of the sporophyte appears 100 days after the sowing of the spores, the lamina is spatulate-shaped, with dichotomous venation and short capitate, unicellular marginal hairs.

  20. Compared gametophytic development of three species of Phebodium (Polypodiaceae, s.str.

    Directory of Open Access Journals (Sweden)

    Blanca Pérez-García

    1998-12-01

    Full Text Available A comparison was made of the gametophytic development of Phlebodium araneosum, P. pseudoaureum and P. decumanum. Spores were collected from several Mexican localities ranging in altitude from 30 to 2300 m and sown on agar with mineral salts. Similarities in germination type and prothallial development were observed. Adult gametophytes are cordate-spathulate to cordate-reniform; gametangia are of the tipical type of the common leptosporangiate ferns. All three species share similar morphogenetic features of the gametophytes, and these do not lend additional characteristics to support the distinction of Phlebodium from Polypodium, Microgramma and Niphidium, as regard the sexual phase.Una comparación del desarrollo del gametofito de Phlebodium araneosum, P. pseudoaureum y P. decumanum fue hecha. Las esporas fueron sembradas en agar con sales minerales. Similitudes en el tipo de germinación y desarrollo protálico fueron observadas. Los gametofitos adultos fueron cordiforme-espatulados a cordiforme-reniformes; los gametangios son del tipo común de los helechos leptosporangiados. Las tres especies muestran caracteristicas morfogenéticas del gametofito similares y no a aden características adicionales que apoyen la distinción entre Phlebodium, Polypodium, Microgramma y Niphidium, por lo que se refiere a la fase sexual.

  1. A new commelinid monocot seed fossil from the early Eocene previously identified as Solanaceae.

    Science.gov (United States)

    Särkinen, Tiina; Kottner, Sören; Stuppy, Wolfgang; Ahmed, Farah; Knapp, Sandra

    2018-01-01

    Fossils provide minimum age estimates for extant lineages. Here we critically evaluate Cantisolanum daturoides Reid & Chandler and two other early putative seed fossils of Solanaceae, an economically important plant family in the Asteridae. Three earliest seed fossil taxa of Solanaceae from the London Clay Formation (Cantisolanum daturoides) and the Poole and Branksome Sand Formations (Solanum arnense Chandler and Solanispermum reniforme Chandler) were studied using x-ray microcomputed tomography (MCT) and scanning electron microscopy (SEM). The MCT scans of Cantisolanum daturoides revealed a high level of pyrite preservation at the cellular level. Cantisolanum daturoides can be clearly excluded from Solanaceae and has more affinities to the commelinid monocots based on a straight longitudinal axis, a prominent single layer of relatively thin-walled cells in the testa, and a clearly differentiated micropyle surrounded by radially elongated and inwardly curved testal cells. While the MCT scans show no internal preservation in Solanum arnense and Solanispermum reniforme, SEM images show the presence of several characteristics that allow the placement of these taxa at the stem node of Solanaceae. Cantisolanum daturoides is likely a member of commelinid monocots and not Solanaceae as previously suggested. The earliest fossil record of Solanaceae is revised to consist of fruit fossil with inflated calyces from the early Eocene of Patagonia (52 Ma) and fossilized seeds from the early to mid-Eocene of Europe (48-46 Ma). The new identity for Cantisolanum daturoides does not alter a late Cretaceous minimum age for commelinids. © 2018 Botanical Society of America.

  2. Biophotonics for Biofuel Upgradation

    Science.gov (United States)

    Rana, Gopinath; Mandal, Tanusri

    2017-12-01

    Experimental studies have been made to find out Cyanobacterias' biophotonical response in gaseous-fuelation and carbon dioxide fixation during photo-anaerobic digestion. A new horizontal type photo-bioreactor has been designed by using environment hazard plastic bottles and it works ideally for anoxygenic cyanobacterial growth. Through `V3-metagenomics' of 16S rRNA gene sequencing by paired-end Illumina MiSeq and downstream analysis by QIIME program, we have identified anaerobic cyanobacteria, represent the orders YS2 and Streptophyta. OTUs have been identified by aligning against Greengenes and Silva databases, separately. The flame temperature of the fuel gas is 860°C and the percent-content of carbon dioxide (CO2) is 17.6%.

  3. Desiccation stress and tolerance in green algae: consequences for ultrastructure, physiological and molecular mechanisms

    Science.gov (United States)

    Holzinger, Andreas; Karsten, Ulf

    2013-01-01

    Although most green algae typically occur in aquatic ecosystems, many species also live partly or permanently under aeroterrestrial conditions, where the cells are exposed to the atmosphere and hence regularly experience dehydration. The ability of algal cells to survive in an air-dried state is termed desiccation tolerance. The mechanisms involved in desiccation tolerance of green algae are still poorly understood, and hence the aim of this review is to summarize recent findings on the effects of desiccation and osmotic water loss. Starting from structural changes, physiological, and biochemical consequences of desiccation will be addressed in different green-algal lineages. The available data clearly indicate a range of strategies, which are rather different in streptophycean and non-streptophycean green algae. While members of the Trebouxiophyceae exhibit effective water loss-prevention mechanisms based on the biosynthesis and accumulation of particular organic osmolytes such as polyols, these compounds are so far not reported in representatives of the Streptophyta. In members of the Streptophyta such as Klebsormidium, the most striking observation is the appearance of cross-walls in desiccated samples, which are strongly undulating, suggesting a high degree of mechanical flexibility. This aids in maintaining structural integrity in the dried state and allows the cell to maintain turgor pressure for a prolonged period of time during the dehydration process. Physiological strategies in aeroterrestrial green algae generally include a rapid reduction of photosynthesis during desiccation, but also a rather quick recovery after rewetting, whereas aquatic species are sensitive to drying. The underlying mechanisms such as the affected molecular components of the photosynthetic machinery are poorly understood in green algae. Therefore, modern approaches based on transcriptomics, proteomics, and/or metabolomics are urgently needed to better understand the molecular

  4. Desiccation stress and tolerance in green algae: Consequences for ultrastructure, physiological and molecular mechanisms

    Directory of Open Access Journals (Sweden)

    Andreas eHolzinger

    2013-08-01

    Full Text Available Although most green algae typically occur in aquatic ecosystems, many species also live partly or permanently under aeroterrestrial conditions, where the cells are exposed to the atmosphere and hence regularly experience dehydration. The ability of algal cells to survive in an air-dried state is termed desiccation tolerance. The mechanisms involved in desiccation tolerance of green algae are still poorly understood, and hence the aim of this review is to summarize recent findings on the effects of desiccation and osmotic water loss. Starting from structural changes, physiological and biochemical consequences of desiccation will be addressed in different green-algal lineages. The available data clearly indicate a range of strategies, which are rather different in streptophycean and non-streptophycean green algae. For example, Trebouxiophyceae exhibit effective water loss-prevention mechanisms based on the biosynthesis and accumulation of particular organic osmolytes such as polyols, these compounds are so far not reported in representatives of the Streptophyta. In members of the Streptophyta such as Klebsormidium, the most striking observation is the appearance of cross-walls in desiccated samples, which are strongly undulating, suggesting a high degree of mechanical flexibility. This allows the cell to maintain turgor pressure for a prolonged period of time during the dehydration process. Physiological strategies in aeroterrestrial green algae generally include a rapid reduction of photosynthesis during desiccation, but also a rather quick recovery after rewetting, whereas aquatic species are sensitive to drying. The underlying mechanisms such as the affected molecular components of the photosynthetic machinery are poorly understood in green algae. Therefore, modern approaches based on transcriptomics, proteomics and/or metabolomics are urgently needed to better understand the molecular mechanisms involved in desiccation-stress physiology of

  5. Composition and seasonal variation of phytoplankton community in Lake Hlan, Republic of Bénin

    Directory of Open Access Journals (Sweden)

    Arsène Mathieu Houssou

    2016-12-01

    Full Text Available Knowledge of biodiversity of aquatic ecosystems is nowadays a challenge for global research. Phytoplankton being very important in the sustainability of ecosystems, its mastery allows the development of early monitoring and evaluation tools of the health status of aquatic environments. The study aims to make an initial inventory of phytoplankton of the lake Hlan and to evaluate the influence of hydrologic season on its dynamics. Plankton samples were collected monthly between May and December 2012 using plankton net of 30 µm size. They were then treated and species identified using light microscopy. 39 species in 7 classes (Bacillariophyceae, 18 species in 10 genera, (Cyanophyceae, 5 species in 5 genera, (Chlorophyceae, 5 species in 3 genera, (Zygnematophyceae, 3 species in 2 genera, (Trebouxiophyceae, 2 species in 2 genera (Euglenophyceae, 4 species in 3 genera and (Dinophyceae, 2 species in 2 genera have been identified. The Shannon index varied between 4.8 and 5.1 bit cell-1. This shows that the ecosystem is balanced. Nevertheless, the presence of potentially toxic species requires a monitoring program for Lake Hlan.

  6. The mystery of clade X: Orciraptor gen. nov. and Viridiraptor gen. nov. are highly specialised, algivorous amoeboflagellates (Glissomonadida, Cercozoa).

    Science.gov (United States)

    Hess, Sebastian; Melkonian, Michael

    2013-09-01

    In freshwater ecosystems a vast diversity of elusive protists exists that specifically feed on microalgae. Due to difficulties in isolation and long-term maintenance, most of these are still poorly known. In this study stable, bacteria-free cultures of several limnetic, algivorous amoeboflagellates were investigated by light microscopy and molecular phylogenetic analyses. All strains represent naked, biflagellate cells, either occurring as rigid flagellates or as surface-attached amoebae. They perforate cell walls of certain Zygnematophyceae and Chlorophyceae (Viridiplantae) and phagocytose algal cell contents. Time-lapse microscopy revealed the feeding behaviour, locomotional processes and life histories of the amoeboflagellates. Clear differences in cell morphology and food range specificity led to the description of two new, monotypic genera Orciraptor and Viridiraptor, which occupy similar, but distinct ecological niches in aquatic ecosystems as 'necrophytophagous' and 'parasitoid' protists, respectively. Molecular phylogenetic analyses based on 18S rDNA sequence data demonstrated that Orciraptor and Viridiraptor belonged to 'clade X' within the order Glissomonadida (Cercozoa, Rhizaria). In conclusion, we established the phenotypic identity of a clade, which until now was exclusively known from environmental sequences, and erect the new family Viridiraptoridae for 'clade X'. Its algivorous members are compared with other glissomonads and nomenclatural, methodological and ecological aspects of these novel 'raptorial' amoeboflagellates are discussed. Copyright © 2013 Elsevier GmbH. All rights reserved.

  7. Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches

    Directory of Open Access Journals (Sweden)

    Ines Krohn-Molt

    2017-10-01

    Full Text Available Microalga are of high relevance for the global carbon cycling and it is well-known that they are associated with a microbiota. However, it remains unclear, if the associated microbiota, often found in phycosphere biofilms, is specific for the microalga strains and which role individual bacterial taxa play. Here we provide experimental evidence that Chlorella saccharophila, Scenedesmus quadricauda, and Micrasterias crux-melitensis, maintained in strain collections, are associated with unique and specific microbial populations. Deep metagenome sequencing, binning approaches, secretome analyses in combination with RNA-Seq data implied fundamental differences in the gene expression profiles of the microbiota associated with the different microalga. Our metatranscriptome analyses indicates that the transcriptionally most active bacteria with respect to key genes commonly involved in plant–microbe interactions in the Chlorella (Trebouxiophyceae and Scenedesmus (Chlorophyceae strains belong to the phylum of the α-Proteobacteria. In contrast, in the Micrasterias (Zygnematophyceae phycosphere biofilm bacteria affiliated with the phylum of the Bacteroidetes showed the highest gene expression rates. We furthermore show that effector molecules known from plant–microbe interactions as inducers for the innate immunity are already of relevance at this evolutionary early plant-microbiome level.

  8. Unraveling algae and cyanobacteria biodiversity in bromeliad phytotelmata in different vegetation formations in Bahia State, Northeastern Brazil

    Directory of Open Access Journals (Sweden)

    Geraldo José Peixoto Ramos

    2018-06-01

    Full Text Available ABSTRACT Knowledge of algal and cyanobacterial diversity of phytotelmata remains poorly-known, especially for bromeliads from different vegetation formations. We investigated the microalgae communities of four species of tank bromeliads from different vegetation formations in Bahia State, Northeast Brazil, highlighting the composition, richness and diversity of taxa. Sampling of water stored in bromeliads was carried out quarterly between 2014 and 2016, and abiotic variables and morphometric attributes of bromeliads were measured. A total of 89 taxa of algae and cyanobacteria were recorded for the four bromeliad species studied. The microalgae communities of the phytotelmata varied among vegetation formations, with one tank bromeliad, Alcantarea nahoumii, with more complex architecture (higher number of leaves and thus more cavities, being distinguished by its high species richness (73 taxa. The bromeliads exhibited little similarity in species composition, with only one species (Phacus polytrophos occurring in all four species. Throughout the entire sampling period, classes with higher species richness, especially due to A. nahoumii, were Zygnematophyceae, Cyanophyceae and Chlorophyceae, which accounted for about 80 % of all species inventoried. Our results contribute to the knowledge of microalga communities of bromeliad phytotelmata in Brazil with regard to species richness and composition, as well as significant environmental characteristics.

  9. Collecting Duct Carcinoma of the Kidney Mimicking Invasive Transitional Cell Carcinoma: A Case Report

    Energy Technology Data Exchange (ETDEWEB)

    Byun, Joo Nam; Lim, Hyung Guhn; Lim, Sung Chul [Chosun University College of Medicine, Gwangju (Korea, Republic of)

    2007-06-15

    Approximately 100 cases of collecting duct carcinoma have been reported in the medical literature. We herein report on a case of collecting duct carcinoma of the kidney in a 75-year-old patient. The abdominal sonography depicted a relatively poorly defined 7x6 cm sized, isoechoic mass lesion, as compared to the normal parenchyma, at the left kidney lower pole and the affected kidney showed preservation of the reniform shape. CT revealed a heterogeneous poorly defined low-attenuation mass that was mainly located in the medulla with involvement of the cortex and the lower half of the renal pelvis. Retrograde ureter opyelography showed a filling defect at the lower renal pelvis and severe narrowing of the left proximal ureter. We initially thought this lesion was invasive transitional cell carcinoma. Subsequent surgery confirmed a collecting duct carcinoma

  10. Xanthogranulomatous pyelonephritis in childhood: ultrasound and CT diagnosis

    Energy Technology Data Exchange (ETDEWEB)

    Cousins, C [City Hospital, Nottingham (United Kingdom); Somers, J [City Hospital, Nottingham (United Kingdom); Broderick, N [City Hospital, Nottingham (United Kingdom); Rance, C [City Hospital, Nottingham (United Kingdom); Shaw, D [Hospital for Sick Children, London (United Kingdom)

    1994-06-01

    Four cases of diffuse xanthogranulomatous pyelonephritis (XPN) in young children are presented. In three patients the clinical picture was one of weight loss, anaemia and neutrophilia with a large renal mass. The fourth presented with haematuria. Ultrasound (US) and CT findings were almost identical in all four patients. US showed the affected kidney was massively enlarged but retained a reniform shape. Dilated fluid spaces containing calculi were present. CT confirmed the US findings and revealed peripheral enhancement without contrast excretion, with dilated calyceal spaces producing the ''bear paw sign''. Extrarenal extension into abdominal wall and psoas muscle is typical and was well demonstrated by CT. The affected kidneys were non-functioning and nephrectomy was required. Typical US and CT features allow a confident diagnosis of XPN and appropriate early treatment. (orig.)

  11. Xanthogranulomatous pyelonephritis in childhood: ultrasound and CT diagnosis

    International Nuclear Information System (INIS)

    Cousins, C.; Somers, J.; Broderick, N.; Rance, C.; Shaw, D.

    1994-01-01

    Four cases of diffuse xanthogranulomatous pyelonephritis (XPN) in young children are presented. In three patients the clinical picture was one of weight loss, anaemia and neutrophilia with a large renal mass. The fourth presented with haematuria. Ultrasound (US) and CT findings were almost identical in all four patients. US showed the affected kidney was massively enlarged but retained a reniform shape. Dilated fluid spaces containing calculi were present. CT confirmed the US findings and revealed peripheral enhancement without contrast excretion, with dilated calyceal spaces producing the ''bear paw sign''. Extrarenal extension into abdominal wall and psoas muscle is typical and was well demonstrated by CT. The affected kidneys were non-functioning and nephrectomy was required. Typical US and CT features allow a confident diagnosis of XPN and appropriate early treatment. (orig.)

  12. Morfo-anatomia de plântulas e número cromossômico de Cybistax antisyphilitica (Mart.) Mart. (Bignoniaceae)

    OpenAIRE

    Ortolani,Flavia Aparecida; Mataqueiro,Márcia Fiorese; Moro,José Roberto; Moro,Fabíola Vitti; Damião Filho,Carlos Ferreira

    2008-01-01

    Plântulas de Cybistax antisyphilitica (ipê-verde), espécie arbórea que ocorre no Estado de São Paulo, Brasil, foram estudadas morfoanatomicamente e citogeneticamente. As plântulas são eudicotiledôneas, fanerocotiledonares e epigéias. Suas sementes apresentam alas hialinas, assimétricas e de textura papirácea. A raiz é axial com tecido epidérmico irregular. O hipocótilo é verde, glabro e apresenta os elementos do xilema em diferenciação. Os cotilédones são verdes, foliáceos, reniformes, com me...

  13. Seedling morpho-anatomy and chromosome number of Cybistax antisyphilitica (Mart.) Mart. (Bignoniaceae)

    OpenAIRE

    Ortolani, Flavia Aparecida; Mataqueiro, Márcia Fiorese; Moro, José Roberto; Moro, Fabíola Vitti; Damião Filho, Carlos Ferreira

    2008-01-01

    Plântulas de Cybistax antisyphilitica (ipê-verde), espécie arbórea que ocorre no Estado de São Paulo, Brasil, foram estudadas morfoanatomicamente e citogeneticamente. As plântulas são eudicotiledôneas, fanerocotiledonares e epigéias. Suas sementes apresentam alas hialinas, assimétricas e de textura papirácea. A raiz é axial com tecido epidérmico irregular. O hipocótilo é verde, glabro e apresenta os elementos do xilema em diferenciação. Os cotilédones são verdes, foliáceos, reniformes, com me...

  14. Remote Sensing of Parasitic Nematodes in Plants

    Science.gov (United States)

    Lawrence, Gary W.; King, Roger; Kelley, Amber T.; Vickery, John

    2007-01-01

    A method and apparatus for remote sensing of parasitic nematodes in plants, now undergoing development, is based on measurement of visible and infrared spectral reflectances of fields where the plants are growing. Initial development efforts have been concentrated on detecting reniform nematodes (Rotylenchulus reniformis) in cotton plants, because of the economic importance of cotton crops. The apparatus includes a hand-held spectroradiometer. The readings taken by the radiometer are processed to extract spectral reflectances at sixteen wavelengths between 451 and 949 nm that, taken together, have been found to be indicative of the presence of Rotylenchulus reniformis. The intensities of the spectral reflectances are used to estimate the population density of the nematodes in an area from which readings were taken.

  15. Surface topography of two trematodes parasites infecting grey heron Ardea cinerea Jouyi (Aves, Ciconiiformes) in Qena, Egypt.

    Science.gov (United States)

    Ammar, Khalaf Nour Abd El-Wahed

    2015-04-01

    Apharyngostrigea ardeolina and Echinoparyphium recurvatum are two important digenean parasites that were recovered from small intestine of grey heron with an infection rate (16.2%) and (8.8%) respectively. The surface topography of two species was redescribed by both light and scanning electron microscopy. Using SEM studies showed that the body surface of two trematodes were covered by contact receptors, several types of sensory tegumental papillae which may have useful function in orientation and feeding through increasing the surface area of absorption, could also play a role in sensation or in selection of the materials for ingestion by the fluke. The head collar of E. recurvatum is reniform in shape, bearing uninterrupted double row of 41 collar finger-like spines, a total including 4 end group ones on both ventral corners., tegumental spines were tongue-shaped without a terminal tip.

  16. Taxonomic descriptions of three marine colepid ciliates, Nolandia sinica spec. nov., Apocoleps caoi spec. nov. and Tiarina fusa (Claparede & Lachmann, 1858) Bergh, 1881 (Ciliophora, Prorodontida).

    Science.gov (United States)

    Chen, Xiangrui; Gao, Shan; Liu, Weiwei; Song, Weibo; Al-Rasheid, Khaled A S; Warren, Alan

    2012-03-01

    The morphology of three marine colepid ciliates, Nolandia sinica spec. nov., Apocoleps caoi spec. nov. and Tiarina fusa (Claparède & Lachmann, 1858) Bergh, 1881, isolated from Chinese coastal waters, was investigated. N. sinica spec. nov. may be separated from its congeners by the structure of its armour plates, each of which may have up to five reniform windows. A. caoi spec. nov. is characterized by its large body with broad anterior end and by having 10-12 long, sharp posterior spines. New data and an improved diagnosis are supplied for Tiarina fusa (Claparède & Lachmann, 1858) Bergh, 1881, which has a spindle-shaped body, about 16 ciliary rows and a single adoral organelle. Sequence similarities with other available colepid species were determined.

  17. Biodiversity patterns of macrophyte and macroinvertebrate communities in two lagoons of Western Greece.

    Science.gov (United States)

    Fyttis, G.; Reizopoulou, S.; Papastergiadou, E.

    2012-04-01

    Aquatic macrophytes and benthic macroinvertebrates were studied seasonally (Spring, Autumn, Summer) between the years 2009 - 2011 in two coastal lagoons (Kotychi and Prokopos) located in Peloponnese, Greece, in order to investigate spatial and temporal biodiversity trends related to hydrological processes (degree of confinement, nitrates, phosphates, chl-a, total suspended materials, light irradiance, pH, salinity, temperature and dissolved oxygen). Kotychi lagoon presents a better communication with the sea, while Prokopos has a high degree of confinement. Both ecosystems seasonally receive freshwater input from streams. The submerged aquatic macrophytes constituted a major component of the ecosystems studied. In total, 22 taxa of aquatic macrophytes (angiosperms and macroalgae), 16 taxa for Kotychi (2 Rhodophyta, 8 Chlorophyta, 5 Magnoliophyta, 1 Streptophyta) and 14 taxa for Prokopos (1 Rhodophyta, 5 Chlorophyta, 5 Magnoliophyta, 3 Streptophyta) were found. Ruppia cirrhosa, and Potamogeton pectinatus were dominant in both lagoons. Kotychi lagoon was also dominated by Zostera noltii and Prokopos by Zannichellia pallustris ssp. pedicellata, while the biomass of aquatic species peaked during the summer periods, in both lagoons. The total number of macroinvertebrates found in the lagoons was 28 taxa for Kotychi and 19 for Prokopos. Chironomidae were dominant in both lagoons, while Kotychi was also dominated by Lekanesphaera monodi and Monocorophium insidiosum, and Prokopos by Ostracoda and Lekanesphaera monodi. Benthic diversity ranged from 1.33 to 2.57 in Kotychi and from 0.67 to 2.48 in Prokopos. Species richness, diversity, and abundance of benthic macroinvertebrates were strongly related to aquatic vegetation and to the degree of communication with the marine environment. Moreover, species richness and abundance of both macrophytes and macroinvertebrates were mainly dependent on depth, temperature, pH and concentration of total suspended materials (TSM). Results

  18. An unexpectedly large and loosely packed mitochondrial genome in the charophycean green alga Chlorokybus atmophyticus

    Directory of Open Access Journals (Sweden)

    Lemieux Claude

    2007-05-01

    Full Text Available Abstract Background The Streptophyta comprises all land plants and six groups of charophycean green algae. The scaly biflagellate Mesostigma viride (Mesostigmatales and the sarcinoid Chlorokybus atmophyticus (Chlorokybales represent the earliest diverging lineages of this phylum. In trees based on chloroplast genome data, these two charophycean green algae are nested in the same clade. To validate this relationship and gain insight into the ancestral state of the mitochondrial genome in the Charophyceae, we sequenced the mitochondrial DNA (mtDNA of Chlorokybus and compared this genome sequence with those of three other charophycean green algae and the bryophytes Marchantia polymorpha and Physcomitrella patens. Results The Chlorokybus genome differs radically from its 42,424-bp Mesostigma counterpart in size, gene order, intron content and density of repeated elements. At 201,763-bp, it is the largest mtDNA yet reported for a green alga. The 70 conserved genes represent 41.4% of the genome sequence and include nad10 and trnL(gag, two genes reported for the first time in a streptophyte mtDNA. At the gene order level, the Chlorokybus genome shares with its Chara, Chaetosphaeridium and bryophyte homologues eight to ten gene clusters including about 20 genes. Notably, some of these clusters exhibit gene linkages not previously found outside the Streptophyta, suggesting that they originated early during streptophyte evolution. In addition to six group I and 14 group II introns, short repeated sequences accounting for 7.5% of the genome were identified. Mitochondrial trees were unable to resolve the correct position of Mesostigma, due to analytical problems arising from accelerated sequence evolution in this lineage. Conclusion The Chlorokybus and Mesostigma mtDNAs exemplify the marked fluidity of the mitochondrial genome in charophycean green algae. The notion that the mitochondrial genome was constrained to remain compact during charophycean

  19. Broad phylogenomic sampling and the sister lineage of land plants.

    Directory of Open Access Journals (Sweden)

    Ruth E Timme

    Full Text Available The tremendous diversity of land plants all descended from a single charophyte green alga that colonized the land somewhere between 430 and 470 million years ago. Six orders of charophyte green algae, in addition to embryophytes, comprise the Streptophyta s.l. Previous studies have focused on reconstructing the phylogeny of organisms tied to this key colonization event, but wildly conflicting results have sparked a contentious debate over which lineage gave rise to land plants. The dominant view has been that 'stoneworts,' or Charales, are the sister lineage, but an alternative hypothesis supports the Zygnematales (often referred to as "pond scum" as the sister lineage. In this paper, we provide a well-supported, 160-nuclear-gene phylogenomic analysis supporting the Zygnematales as the closest living relative to land plants. Our study makes two key contributions to the field: 1 the use of an unbiased method to collect a large set of orthologs from deeply diverging species and 2 the use of these data in determining the sister lineage to land plants. We anticipate this updated phylogeny not only will hugely impact lesson plans in introductory biology courses, but also will provide a solid phylogenetic tree for future green-lineage research, whether it be related to plants or green algae.

  20. Phylogenetic Tree Analysis of the Cold-Hot Nature of Traditional Chinese Marine Medicine for Possible Anticancer Activity

    Directory of Open Access Journals (Sweden)

    Xianjun Fu

    2017-01-01

    Full Text Available Traditional Chinese Marine Medicine (TCMM represents one of the medicinal resources for research and development of novel anticancer drugs. In this study, to investigate the presence of anticancer activity (AA displayed by cold or hot nature of TCMM, we analyzed the association relationship and the distribution regularity of TCMMs with different nature (613 TCMMs originated from 1,091 species of marine organisms via association rules mining and phylogenetic tree analysis. The screened association rules were collected from three taxonomy groups: (1 Bacteria superkingdom, Phaeophyceae class, Fucales order, Sargassaceae family, and Sargassum genus; (2 Viridiplantae kingdom, Streptophyta phylum, Malpighiales class, and Rhizophoraceae family; (3 Holothuroidea class, Aspidochirotida order, and Holothuria genus. Our analyses showed that TCMMs with closer taxonomic relationship were more likely to possess anticancer bioactivity. We found that the cluster pattern of marine organisms with reported AA tended to cluster with cold nature TCMMs. Moreover, TCMMs with salty-cold nature demonstrated properties for softening hard mass and removing stasis to treat cancers, and species within Metazoa or Viridiplantae kingdom of cold nature were more likely to contain AA properties. We propose that TCMMs from these marine groups may enable focused bioprospecting for discovery of novel anticancer drugs derived from marine bioresources.

  1. Comparisons of the fungal and protistan communities among different marine sponge holobionts by pyrosequencing.

    Science.gov (United States)

    He, Liming; Liu, Fang; Karuppiah, Valliappan; Ren, Yi; Li, Zhiyong

    2014-05-01

    To date, the knowledge of eukaryotic communities associated with sponges remains limited compared with prokaryotic communities. In a manner similar to prokaryotes, it could be hypothesized that sponge holobionts have phylogenetically diverse eukaryotic symbionts, and the eukaryotic community structures in different sponge holobionts were probably different. In order to test this hypothesis, the communities of eukaryota associated with 11 species of South China Sea sponges were compared with the V4 region of 18S ribosomal ribonucleic acid gene using 454 pyrosequencing. Consequently, 135 and 721 unique operational taxonomic units (OTUs) of fungi and protists were obtained at 97 % sequence similarity, respectively. These sequences were assigned to 2 phyla of fungi (Ascomycota and Basidiomycota) and 9 phyla of protists including 5 algal phyla (Chlorophyta, Haptophyta, Streptophyta, Rhodophyta, and Stramenopiles) and 4 protozoal phyla (Alveolata, Cercozoa, Haplosporidia, and Radiolaria) including 47 orders (12 fungi, 35 protists). Entorrhizales of fungi and 18 orders of protists were detected in marine sponges for the first time. Particularly, Tilletiales of fungi and Chlorocystidales of protists were detected for the first time in marine habitats. Though Ascomycota, Alveolata, and Radiolaria were detected in all the 11 sponge species, sponge holobionts have different fungi and protistan communities according to OTU comparison and principal component analysis at the order level. This study provided the first insights into the fungal and protistan communities associated with different marine sponge holobionts using pyrosequencing, thus further extending the knowledge on sponge-associated eukaryotic diversity.

  2. Effect of bioaugmented inoculation on microbiota dynamics during solid-state fermentation of Daqu starter using autochthonous of Bacillus, Pediococcus, Wickerhamomyces and Saccharomycopsis.

    Science.gov (United States)

    Li, Pan; Lin, Weifeng; Liu, Xiong; Wang, Xiaowen; Gan, Xing; Luo, Lixin; Lin, Wei-Tie

    2017-02-01

    Daqu, a traditional fermentation starter that is used for Chinese liquor and vinegar production, is still manufactured through a traditional spontaneous solid-state fermentation process with no selected microorganisms are intentionally inoculated. The aim of this work was to analyze the microbiota dynamics during the solid-state fermentation process of Daqu using a traditional and bioaugmented inoculation with autochthonous of Bacillus, Pediococcus, Saccharomycopsis and Wickerhamomyces at an industrial scale. Highly similar dynamics of physicochemical parameters, enzymatic activities and microbial communities were observed during the traditional and bioaugmented solid-state fermentation processes. Both in the two cases, groups of Streptophyta, Rickettsiales and Xanthomonadales only dominated the first two days, but Bacillales and Eurotiales became predominant members after 2 and 10 days fermentation, respectively. Phylotypes of Enterobacteriales, Lactobacillales, Saccharomycetales and Mucorales dominated the whole fermentation process. No significant difference (P > 0.05) in microbial structure was observed between the traditional and bioaugmented fermentation processes. However, slightly higher microbial richness was found during the bioaugmented fermentation process after 10 days fermentation. Our results reinforced the microbiota dynamic stability during the solid-state fermentation process of Daqu, and might aid in controlling the traditional Daqu manufacturing process. Copyright © 2016 Elsevier Ltd. All rights reserved.

  3. Molecular Analysis of Bacterial Microbiota on Brazilian Currency Note Surfaces

    Directory of Open Access Journals (Sweden)

    Tairacan Augusto Pereira da Fonseca

    2015-10-01

    Full Text Available Currency notes have been implicated as a vehicle for transmitting community-acquired bacterial infections. However, the overall diversity of the bacterial population residing on banknotes is still unknown in Brazil. In this study, we aimed to investigate the overall bacterial population from 150 different Brazilian Rial (R$ notes in circulation using a culture-independent Illumina massively parallel sequencing approach of the 16S rRNA genes. Samples were randomly collected from three different street markets or “feiras” in the metropolitan region of São Paulo. Taxonomical composition revealed the abundance of Proteobacteria phyla, followed by Firmicutes and Streptophyta, with a total of 1193 bacterial families and 3310 bacterial genera. Most of these bacterial genera are of human, animal, and environmental origins. Also, our analysis revealed the presence of some potential pathogenic bacterial genera including Salmonella, Staphylococcus, and Klebsiella. The results demonstrate that there is a tremendous diversity of bacterial contamination on currency notes, including organisms known to be opportunistic pathogens. One of the factors that may contribute to the richness of bacterial diversity in currency notes is personal hygiene. Thus, our results underscore the need to increase public awareness of the importance of personal hygiene of money handlers who also handle food.

  4. Evolution of plant P-type ATPases

    Directory of Open Access Journals (Sweden)

    Christian N.S. Pedersen

    2012-02-01

    Full Text Available Five organisms having completely sequenced genomes and belonging to all major branches of green plants (Viridiplantae were analyzed with respect to their content of P-type ATPases encoding genes. These were the chlorophytes Ostreococcus tauria and Chlamydomonas reinhardtii, and the streptophytes Physcomitrella patens (a moss, Selaginella moellendorffii (a primitive vascular plant, and Arabidopsis thaliana (a model flowering plant. Each organism contained sequences for all five subfamilies of P-type ATPases. Our analysis demonstrates when specific subgroups of P-type ATPases disappeared in the evolution of Angiosperms. Na/K-pump related P2C ATPases were lost with the evolution of streptophytes whereas Na+ or K+ pumping P2D ATPases and secretory pathway Ca2+-ATPases remained until mosses. An N-terminally located calmodulin binding domain in P2B ATPases can only be detected in pumps from Streptophytae, whereas, like in animals, a C-terminally localized calmodulin binding domain might be present in chlorophyte P2B Ca2+-ATPases. Chlorophyte genomes encode P3A ATPases resembling protist plasma membrane H+-ATPases and a C-terminal regulatory domain is missing. The complete inventory of P-type ATPases in the major branches of Viridiplantae is an important starting point for elucidating the evolution in plants of these important pumps.

  5. Micrasterias as a model system in plant cell biology

    Directory of Open Access Journals (Sweden)

    Ursula Luetz-Meindl

    2016-07-01

    Full Text Available The unicellular freshwater alga Micrasterias denticulata is an exceptional organism due to its extraordinary star-shaped, highly symmetric morphology and has thus attracted the interest of researchers for many decades. As a member of the Streptophyta, Micrasterias is not only genetically closely related to higher land plants but shares common features with them in many physiological and cell biological aspects. These facts, together with its considerable cell size of about 200 µm, its modest cultivation conditions and the uncomplicated accessibility particularly to any microscopic techniques, make Micrasterias a very well suited cell biological plant model system. The review focuses particularly on cell wall formation and composition, dictyosomal structure and function, cytoskeleton control of growth and morphogenesis as well as on ionic regulation and signal transduction. It has been also shown in the recent years that Micrasterias is a highly sensitive indicator for environmental stress impact such as heavy metals, high salinity, oxidative stress or starvation. Stress induced organelle degradation, autophagy, adaption and detoxification mechanisms have moved in the center of interest and have been investigated with modern microscopic techniques such as 3-D- and analytical electron microscopy as well as with biochemical, physiological and molecular approaches. This review is intended to summarize and discuss the most important results obtained in Micrasterias in the last 20 years and to compare the results to similar processes in higher plant cells.

  6. A CESA from Griffithsia monilis (Rhodophyta, Florideophyceae) has a family 48 carbohydrate-binding module.

    Science.gov (United States)

    Matthews, Peter R; Schindler, Michael; Howles, Paul; Arioli, Tony; Williamson, Richard E

    2010-10-01

    Cellulose synthases form rosette terminal complexes in the plasma membranes of Streptophyta and various linear terminal complexes in other taxa. The sequence of a putative CESA from Griffithsia monilis (Rhodophyta, Floridiophyceae) was deduced using a cloning strategy involving degenerate primers, a cDNA library screen, and 5' and 3' rapid amplification of cDNA ends (RACE). RACE identified two alternative transcriptional starts and four alternative polyadenylation sites. The first translation start codon provided an open reading frame of 2610 bp encoding 870 amino acids and was PCR amplified without introns from genomic DNA. Southern hybridization indicated one strongly hybridizing gene with possible weakly related genes or pseudogenes. Amino acid sequence analysis identified a family 48 carbohydrate-binding module (CBM) upstream of the protein's first predicted transmembrane domain. There are broad similarities in predicted 3D structures of the family 48 modules from CESA, from several glycogen- and starch-binding enzymes, and from protein kinases, but there are substitutions at some residues thought to be involved in ligand binding. The module in G. monilis CESA will be on the cytoplasmic face of the plasma membrane so that it could potentially bind either low molecular weight ligands or starch which is cytosolic rather than inside membrane-bound plastids in red algae. Possible reasons why red algal CESAs have evolved family 48 modules perhaps as part of a system to regulate cellulose synthase activity in relation to cellular carbohydrate status are briefly discussed.

  7. A CESA from Griffithsia monilis (Rhodophyta, Florideophyceae) has a family 48 carbohydrate-binding module

    Science.gov (United States)

    Matthews, Peter R.; Schindler, Michael; Howles, Paul; Arioli, Tony; Williamson, Richard E.

    2010-01-01

    Cellulose synthases form rosette terminal complexes in the plasma membranes of Streptophyta and various linear terminal complexes in other taxa. The sequence of a putative CESA from Griffithsia monilis (Rhodophyta, Floridiophyceae) was deduced using a cloning strategy involving degenerate primers, a cDNA library screen, and 5′ and 3′ rapid amplification of cDNA ends (RACE). RACE identified two alternative transcriptional starts and four alternative polyadenylation sites. The first translation start codon provided an open reading frame of 2610 bp encoding 870 amino acids and was PCR amplified without introns from genomic DNA. Southern hybridization indicated one strongly hybridizing gene with possible weakly related genes or pseudogenes. Amino acid sequence analysis identified a family 48 carbohydrate-binding module (CBM) upstream of the protein's first predicted transmembrane domain. There are broad similarities in predicted 3D structures of the family 48 modules from CESA, from several glycogen- and starch-binding enzymes, and from protein kinases, but there are substitutions at some residues thought to be involved in ligand binding. The module in G. monilis CESA will be on the cytoplasmic face of the plasma membrane so that it could potentially bind either low molecular weight ligands or starch which is cytosolic rather than inside membrane-bound plastids in red algae. Possible reasons why red algal CESAs have evolved family 48 modules perhaps as part of a system to regulate cellulose synthase activity in relation to cellular carbohydrate status are briefly discussed. PMID:20702566

  8. Molecular Analysis of Bacterial Microbiota on Brazilian Currency Note Surfaces.

    Science.gov (United States)

    Pereira da Fonseca, Tairacan Augusto; Pessôa, Rodrigo; Sanabani, Sabri Saeed

    2015-10-22

    Currency notes have been implicated as a vehicle for transmitting community-acquired bacterial infections. However, the overall diversity of the bacterial population residing on banknotes is still unknown in Brazil. In this study, we aimed to investigate the overall bacterial population from 150 different Brazilian Rial (R$) notes in circulation using a culture-independent Illumina massively parallel sequencing approach of the 16S rRNA genes. Samples were randomly collected from three different street markets or "feiras" in the metropolitan region of São Paulo. Taxonomical composition revealed the abundance of Proteobacteria phyla, followed by Firmicutes and Streptophyta, with a total of 1193 bacterial families and 3310 bacterial genera. Most of these bacterial genera are of human, animal, and environmental origins. Also, our analysis revealed the presence of some potential pathogenic bacterial genera including Salmonella, Staphylococcus, and Klebsiella. The results demonstrate that there is a tremendous diversity of bacterial contamination on currency notes, including organisms known to be opportunistic pathogens. One of the factors that may contribute to the richness of bacterial diversity in currency notes is personal hygiene. Thus, our results underscore the need to increase public awareness of the importance of personal hygiene of money handlers who also handle food.

  9. Morfogénesis de la fase sexual del helecho Arachniodes denticulata (Dryopteridaceae

    Directory of Open Access Journals (Sweden)

    Aniceto Mendoza

    1999-12-01

    Full Text Available Se describe la morfología de la espora y desarrollo de la fase sexual de Arachniodes denticulata (Sw. Ching. El material fue recolectado en los estados de Hidalgo, Oaxaca y Veracruz, México (una muestra por cada localidad. Las esporas fueron sembradas en medio de Thompson con agar (30 cajas. Sus esporas son monoletes con perina, elipsoidales, no clorofílicas. Su germinación es tipo Vittaria y su desarrollo protálico tipo Aspidium, el gametofito adulto es cordiforme-espatulado a cordiforme-reniforme; presentan tricomas marginales y superficiales, unicelulares, capitados; los rizoides no tienen cloroplastos; sus gametangios son del tipo común de los helechos leptosporangiados. Después de 200 días de haber sido sembradas las esporas, no se formaron esporofitos. Se concluye que A. denticulata comparte características comunes con A. aristata, A. assamica y con especies de los géneros Cyrtomium, Dryopteris, Polystichum, como son el tipo de germinación y desarrollo protálico, así como la presencia de tricomas unicelulares desde jóvenes protalos. Mientras que Didymochlaena truncatula difiere de las anteriores por presentar un patrón de desarrollo protálico tipo Adiantum y por la ausencia de tricomas en toda su fase sexual.Spore morphology and sexual fase development of Arachniodes denticulata (Sw. Ching are described from material collected in states of Hidalgo, Oaxaca and Veracruz, Mexico (one sample from each locality. The spores were sown in Thompson medium with agar (30 Petri dishes. The spores are monolete, with perine, ellipsoid in shape and non chlorophyllic. The germination is Vittaria-type and the prothallial development Aspidium-type; the gametophytes are cordiform-spatulate to cordiform-reniform in shape, with unicellular capitate trichome in margin and surface; rhizoids without chloroplasts; gametangia are the common type in leptosporangiate homosporous ferns. No sporophytes were observed after 200 days of culture. It is

  10. A CHARACTERIZATION OF COINS FROM THE NAJRAN HOARD, SAUDI ARABIA, PRIOR TO CONSERVATION

    Directory of Open Access Journals (Sweden)

    Abdulnaser AL-ZAHRANI

    2012-09-01

    Full Text Available This paper presents the results of scientific examinations and analyses carried out on the archaeological coins discovered in Najran, Saudi Arabia. Optical microscopy (OM, scanning electron microscopy (SEM coupled with energy dispersive spectrometry (EDS and X-ray diffraction (XRD were used to investigate morphological corrosion features, to clear the nature of the patina and to analyze the elementary composition. Morphologically, it was revealed that there are reniform, coral reef and dendritic shapes of corrosion products and heterogeneous multicolor patina on the studied coin surfaces. It was proven that those coins were made of a silver-copper alloy and were covered by three superficial corrosion layers. The main composition of the coin corrosion compounds was identified as copper carbonate, copper chloride, copper silicates, silver chlorides and silver sulphide. The proposed corrosion mechanism revealed that those coins were characterized by heavy degradation phenomena, induced by corrosive species and soil contaminants. The corrosion processes led to the depletion of the copper and silver enrichment near the surface, as compared to the core composition. This study provides useful information for the conservation and preservation of the Najran hoard coins.

  11. Combined basal cell carcinoma and Langerhans cell histiocytosis of the scrotum in a patient with occupational exposure to coal tar and dust

    Energy Technology Data Exchange (ETDEWEB)

    Izikson, L.; Vanderpool, J.; Brodsky, G.; Mihm, M.C.; Zembowicz, A. [Harvard University, Boston, MA (US). Massachusetts General Hospital

    2004-09-01

    The patient was a 77-year-old male former smoker, with history of several basal cell carcinomas (BCCs) in sun-protected areas around the waistline, who presented with another small ulceration on the anterior right upper scrotum near the base of the penis. BCC was suspected clinically and the lesion was treated with cryosurgery. The tumor recurred, became raised, and began to bleed. An excisional biopsy was performed. It showed nodular BCC surrounded by a cellular proliferation of round histiocytic cells with convoluted, lobulated and reniform nuclei and abundant cytoplasm . The patient had no history of exposure to ionizing radiation, chemotherapy, immunosuppressive medications, prior lymphoma or other malignancy. However, he spent 4 years on a ship loading coal into the furnace of a steam engine, during which he slept in adjacent quarters that were covered with coal dust. Additionally, he had a several-year history of occupational skin exposure to machine oil, oil refinery waste, sulfur waste, hydraulic fluid, and asbestos. He also reported a history of nude sunbathing. The scrotal lesion was re-excised and the patient remains disease-free more than 1 year after the diagnosis.

  12. A new species of Neotropical freshwater stingray of the genus Potamotrygon Garman, 1877 from the Río Madrede Díos, Peru (Chondrichthyes: Potamotrygonidae

    Directory of Open Access Journals (Sweden)

    João Paulo C.B. da Silva

    2011-01-01

    Full Text Available Potamotrygon tatianae sp. nov., is described from Río Madre de Díos, Peru, upper Rio Madeira basin. The new species is distinguished from all congeners by a unique combination of characters, including its dorsal color pattern formed by a relatively slender, highly convoluted, beige to dark brown vermicular pattern, a single row of dorsal tail spines, and a relatively longer tail posterior to caudal stings. Potamotrygon tatianae sp. nov., occurs sympatrically with other species of Potamotrygon (P. falkneri, P. orbignyi and P. motoro. From the similar species P. falkneri, P. tatianae sp. nov., is further distinguished by the absence of circular, reniform, and oval spots, by its proportionally much longer tail, by having dorsal tail spines in one irregular row, and by features of the ventral lateral-line canal, dermal denticles and neurocranium. From P. orbignyi, the new species is distinct by lacking a reticulate pattern on dorsal disc and by the presence of two angular cartilages. From P. motoro, P. tatianae sp. nov., is further separated by the lack of ocelli formed by strong black concentric rings, by the more flattened aspect of its head and disc, and by having smaller and more numerous teeth. The discovery of a new species that so closely resembles a congeneric form in color pattern, a feature highly variable within the latter, highlights the importance of examining large series of individuals and of detailed morphological analyses in revealing the potentially highly cryptic nature of the diversity within the family.

  13. FIRST RECORD OF ICHTHYOSAURS IN SICILY(UPPER TRIASSIC OF MONTE SCALPELLO, CATANIA PROVINCE

    Directory of Open Access Journals (Sweden)

    CRISTIANO DAL SASSO

    2014-03-01

    Full Text Available Here we report for the first time on the presence of ichthyosaurs in Sicily, southern Italy. The deposit of origin (Mufara Formation can be dated to the upper Carnian (Tuvalian substage based on a typical association of ammonites, one of which (Shastites sp. is embedded in the sediment still encrusting one of the bone specimens recently found. The latter consist of two isolated vertebral centra that are referred to the Ichthyosauria thanks to their disk-like shape (i.e. they are much taller than long combined with the amphicelous condition, lack of transverse processes, and presence of rib articulations on the central sides. The largest specimen is more precisely an anterior dorsal vertebra from an adult individual, ascribed to Shastasauridae indet. By the presence of elongated reniform diapophyseal facets, cranially not truncated, and absence of parapophyses. The smaller specimen represents an anterior cervical element from an immature individual of a likely smaller-sized, indeterminate taxon. These finds indicate that the biodiversity of the Monte Scalpello Triassic fauna is higher than previously known, but above all represent the southernmost occurrence of Triassic ichthyosaurs in the western Tethys basin.

  14. Morfologia de frutos, sementes e desenvolvimento pós-seminal de cabelo-de-negro - Connarus suberosus Planch. (Connaraceae

    Directory of Open Access Journals (Sweden)

    Miele Tallon Matheus

    2009-12-01

    Full Text Available This study describe and illustrate the morphological aspects of cabelo-de-negro (Connarus suberosus Planch. fruits, seeds and post-seminal development. The fruits were characterized externally, the seeds internally and externally, and the germination and initial development of the seedlings were also analyzed and described. A stereoscope microscope was used for the observations whereas the measurements were made with a pachimeter. Fruits are ovoid and dehiscent follicles, of ferruginous-yellow color, containing one or two seeds. The seed has a reniform shape, showing dark coat and a circular hilum, which is recovered by the yellow-orange arilum. Seeds have axial and invaginated embryo, with green cotyledons that show various specks of ferruginous-reddish pigmentation, and a short, straight and cylindrical hypocotil-radicle axis. Seed germination was hypogeous and criptocotylar. The primary root emerges after 3 to 10 days, followed by the emergence of the protophyll, which occurs from around 10 to 20 days after sowing.

  15. Top 10 plant-parasitic nematodes in molecular plant pathology.

    Science.gov (United States)

    Jones, John T; Haegeman, Annelies; Danchin, Etienne G J; Gaur, Hari S; Helder, Johannes; Jones, Michael G K; Kikuchi, Taisei; Manzanilla-López, Rosa; Palomares-Rius, Juan E; Wesemael, Wim M L; Perry, Roland N

    2013-12-01

    The aim of this review was to undertake a survey of researchers working with plant-parasitic nematodes in order to determine a 'top 10' list of these pathogens based on scientific and economic importance. Any such list will not be definitive as economic importance will vary depending on the region of the world in which a researcher is based. However, care was taken to include researchers from as many parts of the world as possible when carrying out the survey. The top 10 list emerging from the survey is composed of: (1) root-knot nematodes (Meloidogyne spp.); (2) cyst nematodes (Heterodera and Globodera spp.); (3) root lesion nematodes (Pratylenchus spp.); (4) the burrowing nematode Radopholus similis; (5) Ditylenchus dipsaci; (6) the pine wilt nematode Bursaphelenchus xylophilus; (7) the reniform nematode Rotylenchulus reniformis; (8) Xiphinema index (the only virus vector nematode to make the list); (9) Nacobbus aberrans; and (10) Aphelenchoides besseyi. The biology of each nematode (or nematode group) is reviewed briefly. © 2013 BSPP AND JOHN WILEY & SONS LTD.

  16. New fossil seeds of Eurya (Theaceae from East Asia and their paleobiogeographic implications

    Directory of Open Access Journals (Sweden)

    Hai Zhu

    2016-06-01

    Full Text Available Eurya has an excellent fossil record in Europe, but it has only a few fossil occurrences in East Asia though this vast area houses the highest modern diversity of the genus. In this study, three-dimensionally preserved fossil seeds of Eurya stigmosa (Ludwig Mai from the late Pliocene of northwestern Yunnan, southwestern China are described. The seeds are compressed and flattened, slightly campylotropous, and nearly circular to slightly angular in shape. The surface of the seeds is sculptured by a distinctive foveolate pattern, consisting of funnel-shaped and finely pitted cells. Each seed valve contains a reniform or horseshoe-shaped embryo cavity, a characteristic condyle structure and an internal raphe. These fossil seeds represent one of the few fossil records of Eurya in East Asia. This new finding therefore largely extends the distributional ranges of Eurya during Neogene. Fossil records summarized here show that Eurya persisted in Europe until the early Pleistocene, but disappeared thereafter. The genus might have first appeared in East Asia no later than the late Oligocene, and dispersed widely in regions such as Japan, Nepal, and southwestern China.

  17. Soybean cyst nematode culture collections and field populations from North Carolina and Missouri reveal high incidences of infection by viruses.

    Science.gov (United States)

    Ruark, Casey L; Koenning, Stephen R; Davis, Eric L; Opperman, Charles H; Lommel, Steven A; Mitchum, Melissa G; Sit, Tim L

    2017-01-01

    Five viruses were previously discovered infecting soybean cyst nematodes (SCN; Heterodera glycines) from greenhouse cultures maintained in Illinois. In this study, the five viruses [ScNV, ScPV, ScRV, ScTV, and SbCNV-5] were detected within SCN greenhouse and field populations from North Carolina (NC) and Missouri (MO). The prevalence and titers of viruses in SCN from 43 greenhouse cultures and 25 field populations were analyzed using qRT-PCR. Viral titers within SCN greenhouse cultures were similar throughout juvenile development, and the presence of viral anti-genomic RNAs within egg, second-stage juvenile (J2), and pooled J3 and J4 stages suggests active viral replication within the nematode. Viruses were found at similar or lower levels within field populations of SCN compared with greenhouse cultures of North Carolina populations. Five greenhouse cultures harbored all five known viruses whereas in most populations a mixture of fewer viruses was detected. In contrast, three greenhouse cultures of similar descent to one another did not possess any detectable viruses and primarily differed in location of the cultures (NC versus MO). Several of these SCN viruses were also detected in Heterodera trifolii (clover cyst) and Heterodera schachtii (beet cyst), but not the other cyst, root-knot, or reniform nematode species tested. Viruses were not detected within soybean host plant tissue. If nematode infection with viruses is truly more common than first considered, the potential influence on nematode biology, pathogenicity, ecology, and control warrants continued investigation.

  18. New Record of Aspidogaster ijimai Kawamura, 1913 (Trematoda: Aspidogastridae) from Cyprinus carpio in Korea.

    Science.gov (United States)

    Lee, Dongmin; Park, Hansol; Choe, Seongjun; Kang, Yeseul; Jeon, Hyeong-Kyu; Eom, Keeseon S

    2017-10-01

    Aspidogastrid trematodes (Subclass Aspidogastrea) are a relatively small group with a characteristic adhesive disc and parasitize in a variety of cold-blooded hosts. Until now, only 2 species in the genus Cotylaspis, i.e., C. coreensis and C. sinensis, have been reported as the aspidogastrid trematode in the Republic of Korea (=Korea). In the present study, we intended to describe a species of aspidogastrids collected from the small intestine of the common carp, Cypri-nus carpio, in a faunistic point of view. Total 51 specimens were collected from a carp caught in Nakdong-gang (River) on May 2015. Some of them were prepared as the specimens for light microscopic observations, and some others were prepared for SEM. They were slightly elongated without head lobes, 2,432×840 μm in average size, and had characteristic adhesive discs with 4 rows and 46 alveoli in average. The ovary was reniform and was located in the posterior-upper part of the body. The single testis was larger than the ovary and was located below the ovary. The uterus was coiled containing numerous eggs and distributed in the posterior 2/3 of the body. The vitellaria were follicular, and distributed from the mid-level of testis to near the posterior end. The morphological characters with dimensions of our specimens were closely identical with those of Aspidogaster ijimai previously described. A new aspidogastrid is added among the Korean trematode fauna by the present study.

  19. Environmental Factors Affecting Microbiota Dynamics during Traditional Solid-state Fermentation of Chinese Daqu Starter

    Science.gov (United States)

    Li, Pan; Lin, Weifeng; Liu, Xiong; Wang, Xiaowen; Luo, Lixin

    2016-01-01

    In this study, we investigated the microbiota dynamics during two industrial-scale traditional solid-state fermentation (SSF) processes of Daqu starters. Similar evolution profiles of environmental parameters, enzymatic activities, microbial amounts, and communities were observed during the medium temperature SSF (MTSSF) and low temperature SSF (LTSSF) processes. Orders of Rickettsiales and Streptophyta only dominated the initial 2 days, and Eurotiales only predominated from days 10 to 24, however, phylotypes of Enterobacteriales, Lactobacillales, Bacillales, Saccharomycetales, and Mucorales both prevailed throughout the MTSSF and LTSSF processes. Nevertheless, the pH in MTSSF process on day 5 were 5.28, while in LTSSF process (4.87) significantly lower (P < 0.05). The glucoamylase activities in MTSSF process dropped from 902.71 to 394.33 mg glucose g-1 h-1 on days 5 to 24, while significantly lower (P < 0.05) in LTSSF process and decreased from 512.25 to 268.69 mg glucose g-1 h-1. The relative abundance of Enterobacteriales and Lactobacillales in MTSSF process constituted from 10.30 to 71.73% and 2.34 to 16.68%, while in LTSSF process ranged from 3.16 to 41.06% and 8.43 to 57.39%, respectively. The relative abundance of Eurotiales in MTSSF process on days 10 to 24 decreased from 36.10 to 28.63%, while obviously higher in LTSSF process and increased from 52.00 to 72.97%. Furthermore, lower bacterial richness but higher fungal richness were displayed, markedly differences in bacterial communities but highly similarities in fungal communities were exhibited, during MTSSF process comparatively to the LTSSF process. Canonical correspondence analysis revealed microbial structure transition happened at thermophilic stages under environmental stress of moisture, pH, acidity, and pile temperature. These profound understanding might help to effectively control the traditional Daqu SSF process by adjusting relevant environmental parameters. PMID:27540378

  20. Bacterial diversity and community along the succession of biological soil crusts in the Gurbantunggut Desert, Northern China.

    Science.gov (United States)

    Zhang, Bingchang; Kong, Weidong; Wu, Nan; Zhang, Yuanming

    2016-06-01

    Biological soil crusts (BSCs) are common and play critical roles in semi-arid and arid ecosystems. Bacteria, as an important community in BSCs, play critical roles in biochemical processes. However, how bacterial diversity and community change in different successional stages of BSCs is still unknown. We used 454 pyrosequencing of 16S rRNA to investigate the bacterial composition and community, and the relationships between bacterial composition and environmental factors were also explored. In different successional stages of BSCs, the number of bacteria operational taxonomic units (OTUs) detected in each sample ranged from 2572 to 3157. Proteobacteria, Cyanobacteria, Bacteroidetes were dominant in BSCs, followed by Firmicutes, Acidobacteria, and Actinobacteria. At the successional stages of BSCs, bacterial communities, OTU composition and their relative abundance notably differentiated, and Cyanobacteria, especially Microcoleus vaginatus, dominated algal crust and lichen crust, and were the main C-fixing bacteria in BSCs. Proteobacteria and Bacteroidetes increased with the development of BSCs. OTUs related to Planomicrobium Chinese, Desulfobulbus sp., Desulfomicrobium sp., Arthrobacter sp., and Ahhaerbacter sp. showed higher relative abundance in bare sand than other successional stages of BSCs, while relative abundance of Sphingomonas sp. Niastella sp., Pedobacter, Candidatus solobacter, and Streptophyta increased with the development of BSCs. In successional stages of BSCs, bacterial OTUs composition demonstrated strong correlations with soil nutrients, soil salts, and soil enzymes. Additionally, variation of bacterial composition led to different ecological function. In bare sand, some species were related with mineral metabolism or promoting plant growth, and in algal crust and lichen crust, C-fixing bacteria increased and accumulated C to the desert soil. In later developed stage of BSCs, bacteria related with decomposition of organic matter, such as

  1. Plant Proteins Are Smaller Because They Are Encoded by Fewer Exons than Animal Proteins.

    Science.gov (United States)

    Ramírez-Sánchez, Obed; Pérez-Rodríguez, Paulino; Delaye, Luis; Tiessen, Axel

    2016-12-01

    Protein size is an important biochemical feature since longer proteins can harbor more domains and therefore can display more biological functionalities than shorter proteins. We found remarkable differences in protein length, exon structure, and domain count among different phylogenetic lineages. While eukaryotic proteins have an average size of 472 amino acid residues (aa), average protein sizes in plant genomes are smaller than those of animals and fungi. Proteins unique to plants are ∼81aa shorter than plant proteins conserved among other eukaryotic lineages. The smaller average size of plant proteins could neither be explained by endosymbiosis nor subcellular compartmentation nor exon size, but rather due to exon number. Metazoan proteins are encoded on average by ∼10 exons of small size [∼176 nucleotides (nt)]. Streptophyta have on average only ∼5.7 exons of medium size (∼230nt). Multicellular species code for large proteins by increasing the exon number, while most unicellular organisms employ rather larger exons (>400nt). Among subcellular compartments, membrane proteins are the largest (∼520aa), whereas the smallest proteins correspond to the gene ontology group of ribosome (∼240aa). Plant genes are encoded by half the number of exons and also contain fewer domains than animal proteins on average. Interestingly, endosymbiotic proteins that migrated to the plant nucleus became larger than their cyanobacterial orthologs. We thus conclude that plants have proteins larger than bacteria but smaller than animals or fungi. Compared to the average of eukaryotic species, plants have ∼34% more but ∼20% smaller proteins. This suggests that photosynthetic organisms are unique and deserve therefore special attention with regard to the evolutionary forces acting on their genomes and proteomes. Copyright © 2016 The Authors. Production and hosting by Elsevier Ltd.. All rights reserved.

  2. Plant and fungal diversity in gut microbiota as revealed by molecular and culture investigations.

    Directory of Open Access Journals (Sweden)

    Nina Gouba

    Full Text Available BACKGROUND: Few studies describing eukaryotic communities in the human gut microbiota have been published. The objective of this study was to investigate comprehensively the repertoire of plant and fungal species in the gut microbiota of an obese patient. METHODOLOGY/PRINCIPAL FINDINGS: A stool specimen was collected from a 27-year-old Caucasian woman with a body mass index of 48.9 who was living in Marseille, France. Plant and fungal species were identified using a PCR-based method incorporating 25 primer pairs specific for each eukaryotic phylum and universal eukaryotic primers targeting 18S rRNA, internal transcribed spacer (ITS and a chloroplast gene. The PCR products amplified using these primers were cloned and sequenced. Three different culture media were used to isolate fungi, and these cultured fungi were further identified by ITS sequencing. A total of 37 eukaryotic species were identified, including a Diatoms (Blastocystis sp. species, 18 plant species from the Streptophyta phylum and 18 fungal species from the Ascomycota, Basidiomycota and Chytridiocomycota phyla. Cultures yielded 16 fungal species, while PCR-sequencing identified 7 fungal species. Of these 7 species of fungi, 5 were also identified by culture. Twenty-one eukaryotic species were discovered for the first time in human gut microbiota, including 8 fungi (Aspergillus flavipes, Beauveria bassiana, Isaria farinosa, Penicillium brevicompactum, Penicillium dipodomyicola, Penicillium camemberti, Climacocystis sp. and Malassezia restricta. Many fungal species apparently originated from food, as did 11 plant species. However, four plant species (Atractylodes japonica, Fibraurea tinctoria, Angelica anomala, Mitella nuda are used as medicinal plants. CONCLUSIONS/SIGNIFICANCE: Investigating the eukaryotic components of gut microbiota may help us to understand their role in human health.

  3. DNA accumulation on ventilation system filters in university buildings in Singapore.

    Science.gov (United States)

    Luhung, Irvan; Wu, Yan; Xu, Siyu; Yamamoto, Naomichi; Chang, Victor Wei-Chung; Nazaroff, William W

    2017-01-01

    Biological particles deposit on air handling system filters as they process air. This study reports and interprets abundance and diversity information regarding biomass accumulation on ordinarily used filters acquired from several locations in a university environment. DNA-based analysis was applied both to quantify (via DNA fluorometry and qPCR) and to characterize (via high-throughput sequencing) the microbial material on filters, which mainly processed recirculated indoor air. Results were interpreted in relation to building occupancy and ventilation system operational parameters. Based on accumulated biomass, average DNA concentrations per AHU filter surface area across nine indoor locations after twelve weeks of filter use were in the respective ranges 1.1 to 41 ng per cm2 for total DNA, 0.02 to 3.3 ng per cm2 for bacterial DNA and 0.2 to 2.0 ng DNA per cm2 for fungal DNA. The most abundant genera detected on the AHU filter samples were Clostridium, Streptophyta, Bacillus, Acinetobacter and Ktedonobacter for bacteria and Aspergillus, Cladosporium, Nigrospora, Rigidoporus and Lentinus for fungi. Conditional indoor airborne DNA concentrations (median (range)) were estimated to be 13 (2.6-107) pg/m3 for total DNA, 0.4 (0.05-8.4) pg/m3 for bacterial DNA and 2.3 (1.0-5.1) pg/m3 for fungal DNA. Conditional airborne concentrations and the relative abundances of selected groups of genera correlate well with occupancy level. Bacterial DNA was found to be more responsive than fungal DNA to differences in occupancy level and indoor environmental conditions.

  4. Microbial community composition of transiently wetted Antarctic Dry Valley soils.

    Science.gov (United States)

    Niederberger, Thomas D; Sohm, Jill A; Gunderson, Troy E; Parker, Alexander E; Tirindelli, Joëlle; Capone, Douglas G; Carpenter, Edward J; Cary, Stephen C

    2015-01-01

    During the summer months, wet (hyporheic) soils associated with ephemeral streams and lake edges in the Antarctic Dry Valleys (DVs) become hotspots of biological activity and are hypothesized to be an important source of carbon and nitrogen for arid DV soils. Recent research in the DV has focused on the geochemistry and microbial ecology of lakes and arid soils, with substantially less information being available on hyporheic soils. Here, we determined the unique properties of hyporheic microbial communities, resolved their relationship to environmental parameters and compared them to archetypal arid DV soils. Generally, pH increased and chlorophyll a concentrations decreased along transects from wet to arid soils (9.0 to ~7.0 for pH and ~0.8 to ~5 μg/cm(3) for chlorophyll a, respectively). Soil water content decreased to below ~3% in the arid soils. Community fingerprinting-based principle component analyses revealed that bacterial communities formed distinct clusters specific to arid and wet soils; however, eukaryotic communities that clustered together did not have similar soil moisture content nor did they group together based on sampling location. Collectively, rRNA pyrosequencing indicated a considerably higher abundance of Cyanobacteria in wet soils and a higher abundance of Acidobacterial, Actinobacterial, Deinococcus/Thermus, Bacteroidetes, Firmicutes, Gemmatimonadetes, Nitrospira, and Planctomycetes in arid soils. The two most significant differences at the genus level were Gillisia signatures present in arid soils and chloroplast signatures related to Streptophyta that were common in wet soils. Fungal dominance was observed in arid soils and Viridiplantae were more common in wet soils. This research represents an in-depth characterization of microbial communities inhabiting wet DV soils. Results indicate that the repeated wetting of hyporheic zones has a profound impact on the bacterial and eukaryotic communities inhabiting in these areas.

  5. Environmental factors affecting microbiota dynamics during traditional solid-state fermentation of Chinese Daqu starter

    Directory of Open Access Journals (Sweden)

    Pan Li

    2016-08-01

    Full Text Available In this study, we investigated the microbiota dynamics during two industrial-scale traditional solid-state fermentation (SSF processes of Daqu starters. Similar evolution profiles of environmental parameters, enzymatic activities, microbial amounts and communities were observed during the medium temperature SSF (MTSSF and low temperature SSF (LTSSF processes. Orders of Rickettsiales and Streptophyta only dominated the initial two days, and Eurotiales only predominated from days 10 to 24, however, phylotypes of Enterobacteriales, Lactobacillales, Bacillales, Saccharomycetales and Mucorales both prevailed throughout the MTSSF and LTSSF processes. Nevertheless, the pH in MTSSF process on day 5 were 5.28, while in LTSSF process (4.87 significantly lower (P < 0.05. The glucoamylase activities in MTSSF process dropped from 902.71 to 394.33 mg glucose g-1 h-1 on days 5 to 24, while significantly lower (P < 0.05 in LTSSF process and decreased from 512.25 to 268.69 mg glucose g-1 h-1. The relative abundance of Enterobacteriales and Lactobacillales in MTSSF process constituted from 10.30% to 71.73% and 2.34% to 16.68%, while in LTSSF process ranged from 3.16% to 41.06% and 8.43% to 57.39%, respectively. The relative abundance of Eurotiales in MTSSF process on days 10 to 24 decreased from 36.10% to 28.63%, while obviously higher in LTSSF process and increased from 52.00% to 72.97%. Furthermore, lower bacterial richness but higher fungal richness were displayed, markedly differences in bacterial communities but highly similarities in fungal communities were exhibited, during MTSSF process comparatively to the LTSSF process. Canonical correspondence analysis revealed microbial structure transition happened at thermophilic stages under environmental stress of moisture, pH, acidity and pile temperature. These profound understanding might help to effectively control the traditional Daqu SSF process by adjusting relevant environmental parameters.

  6. Plant Proteins Are Smaller Because They Are Encoded by Fewer Exons than Animal Proteins

    Directory of Open Access Journals (Sweden)

    Obed Ramírez-Sánchez

    2016-12-01

    Full Text Available Protein size is an important biochemical feature since longer proteins can harbor more domains and therefore can display more biological functionalities than shorter proteins. We found remarkable differences in protein length, exon structure, and domain count among different phylogenetic lineages. While eukaryotic proteins have an average size of 472 amino acid residues (aa, average protein sizes in plant genomes are smaller than those of animals and fungi. Proteins unique to plants are ∼81 aa shorter than plant proteins conserved among other eukaryotic lineages. The smaller average size of plant proteins could neither be explained by endosymbiosis nor subcellular compartmentation nor exon size, but rather due to exon number. Metazoan proteins are encoded on average by ∼10 exons of small size [∼176 nucleotides (nt]. Streptophyta have on average only ∼5.7 exons of medium size (∼230 nt. Multicellular species code for large proteins by increasing the exon number, while most unicellular organisms employ rather larger exons (>400 nt. Among subcellular compartments, membrane proteins are the largest (∼520 aa, whereas the smallest proteins correspond to the gene ontology group of ribosome (∼240 aa. Plant genes are encoded by half the number of exons and also contain fewer domains than animal proteins on average. Interestingly, endosymbiotic proteins that migrated to the plant nucleus became larger than their cyanobacterial orthologs. We thus conclude that plants have proteins larger than bacteria but smaller than animals or fungi. Compared to the average of eukaryotic species, plants have ∼34% more but ∼20% smaller proteins. This suggests that photosynthetic organisms are unique and deserve therefore special attention with regard to the evolutionary forces acting on their genomes and proteomes.

  7. Inflammatory fibroid polyp: an immunohistochemical study Pólipo inflamatório fibróide: estudo imunoistoquímico

    Directory of Open Access Journals (Sweden)

    Gilda da Cunha Santos

    2004-06-01

    Full Text Available BACKGROUND: Inflammatory fibroid polyp is a localized lesion, which arises in the submucosa of the gastrointestinal tract, most often in the stomach.Although it is generally believed to represent a reactive, nonneoplastic condition, its histogenesis remains controversial. AIM: To study inflammatory fibroid polyp by immunohistochemistry in an attempt to further clarify their histogenesis. MATERIAL AND METHODS: Nine cases were studied by immunohistochemistry using a panel of antibodies against smooth-muscle actin, vimentin, S-100 protein, factor VIII- R.Ag and macrophage (HAM-56. RESULTS: There was a strong diffuse positive staining pattern in the spindle cells with vimentin antibody. A patchy staining for smooth-muscle actin was observed in these cells. Immunophenotyping revealed a heterogeneous reaction with HAM-56. In edematous areas, HAM-56-positive cells show voluminous cytoplasm and reniform nuclei. In cell-rich areas, the HAM-56-positive cells had fusiform cytoplasm. Stains for S-100 and factor VIII RAg were negative in the proliferating elements. CONCLUSIONS: The present immunohistochemical study refutes the suggested neural or vascular nature of the lesion. The strong positivity for vimentin in all cases suggests a major component of spindle cells best recognizable as fibroblasts. These results would favor the existence of a span of morphological and immunohistochemical patterns possibly indicating evolutive phases of an inflammatory reaction.RACIONAL: O pólipo inflamatório fibróide é uma lesão localizada que se origina na submucosa do trato gastrointestinal, mais freqüentemente do estômago. Embora se acredite que represente condição reativa e não neoplásica, sua histogênese permanece controversa. OBJETIVO: Estudar o pólipo inflamatório fibróide por imunoistoquímica na tentativa de contribuir para o entendimento de sua histogênese. PACIENTES AND MÉTODOS: Foram estudados nove casos por imunoistoquímica usando-se um

  8. Morphological characterization of fruits, seeds and phases of germination Pachira aquatica Aubl. (Bombacaceae Caracterização morfológica de frutos, sementes e fases da germinação de Pachira aquatica Aubl. (Bombacaceae

    Directory of Open Access Journals (Sweden)

    Riselane de Lucena Alcântara Bruno

    2012-06-01

    Full Text Available The mongubeira (Pachira aquatica Aubl is a fruit used in urban forestry in many cities within the country and infrequent in their natural habitat in the forests periodically flooded the coast of Pará and Maranhão. This study aimed to describe and illustrate the external and internal morphological characteristics of fruits and seeds, as well as the stages of germination of P. aquatica. For a description of the fruits were observed internal and external details of the pericarp, related to texture, texture, hairiness, brightness, shape, number of seeds per fruit and dehiscence. For seed morphology were observed following external dimensions, color, texture, consistency, shape, position of hilum and micropyle. For the internal characteristics, there was the presence or absence of endosperm and embryo type. The fruits of P. aquatica capsules are semi-woody, dehiscent, generally oval shape, some are curved and longitudinal cracks in the pericarp, is made up of five septa, polispermic and stained dark brown. The seeds vary from angular to reniform, have a large amount of endosperm and are inserted into the central axis of the fruit. Germination is epigeal type phanerocotylar, starting on the eighth day and can be terminated on the 15th day after sowing.A mongubeira (Parchira aquatica Aubl. é uma frutífera utilizada na arborização urbana de muitas cidades no interior do país e pouco frequente em seu habitat natural, nas matas periodicamente inundáveis do litoral do Pará e Maranhão. Este trabalho teve como objetivo descrever e ilustrar as características morfológicas externas e internas de frutos e sementes, bem como as fases do processo de germinação de P. aquatica. Para a descrição dos frutos foram observados detalhes externos e internos do pericarpo, referentes à textura, consistência, pilosidade, brilho, forma, número de sementes por fruto e deiscência. Para a morfologia de sementes foram observadas as seguintes caracter

  9. Unapal-Llanogrande, nuevo cultivar de zapallo adaptado a las condiciones del valle geográfico del río Cauca, Colombia

    Directory of Open Access Journals (Sweden)

    Edgar Iván Estrada Salazar

    2010-04-01

    Full Text Available El nuevo cultivar de zapallo (Cucurbita moschata Unapal-Llanogrande se originó a partir de la población básica P-34 obtenida en la segunda colección colombiana de germoplasma realizada por Montes (2003. La población heterogénea (P-34 fue sometida a tres ciclos de selección recurrente fenotípica para los caracteres: producción por planta, prolificidad, tamaño de fruto pequeño (2 - 3 kg, calidad de fruto y sanidad de la planta. El cultivar expresa alta uniformidad y estabilidad fenotípica para hábito de crecimiento postrado con moderado número de guías, tallo cilíndrico angular y pubescente, hojas lobuladas reniformes pequeñas, con alta frecuencia de manchas plateadas, floración monoica, inicio de floración estaminada y pistilada entre 60-70 días después de la emergencia, inicio de cosecha de 130 a140 días, con plantas de alta prolificidad (9 a 11 frutos y alto rendimiento (entre 10 y 20 kg/planta. El fruto es redondo con superficie lisa, sin costillar, de color verde brillante y manchas amarillas o rojizas en la madurez, el peso varía entre 1.5 y 3.0 kg, el diámetro de pulpa entre 3.8 y 4.8 cm y el de cavidad placentaria entre 9 y 12 cm. El color de pulpa es amarillo intenso.

  10. Sedimentary environments in the south-western Barents Sea during the last deglaciation and the Holocene: a case study outside the Ingøydjupet trough

    Directory of Open Access Journals (Sweden)

    Mauro Pau

    2016-05-01

    Full Text Available A lithological and foraminiferal study of newly acquired sediment cores outside the Ingøydjupet (Ingøy Deep trough has been carried out to improve constraints on the last deglacial history in the south-western Barents Sea. Three lithofacies and three foraminiferal facies were identified. The lowermost lithological unit is a diamicton interpreted as glacial till. It contains a low-abundance, ecologically mixed foraminiferal assemblage, presumably resulting from glacial reworking. Above the diamicton, a layer of ice-rafted debris (IRD, likely associated with intensive iceberg production, marks the initial destabilization of the marine-based ice sheet. At this time, ca. 15.6–15.0 Ky B.P., opportunistic foraminiferal species Nonionellina labradorica and Stainforthia spp. reached peak abundance. During the south-western Barents Sea ice-margin retreat, presumably corresponding to the Bølling interstadial, a sequence of glaciomarine laminations was deposited conformably on the layer of IRD. Sedimentation rates were apparently high (estimated about 0.4 cm per year and the foraminiferal fauna was dominated by Elphidium spp. and Cassidulina reniforme, species common for glacier-proximal environments. A hiatus at the top of the deglacial unit is likely linked to the high bottom-current activity associated with a strengthened inflow of Atlantic water masses into the Barents Sea. The uppermost lithological unit is represented by the Holocene marine sandy mud. It contains a high-abundance, high-diversity foraminiferal fauna with common cassidulinids, Cibicides spp., Epistominella pusilla and planktic species.

  11. Aspectos morfológicos de frutos e sementes e caracterização citogenética de Crotalaria lanceolata E. Mey. (Papilionoideae - Fabaceae Morphological aspects of fruits and seeds and cytogenetic characterization of Crotalaria lanceolata E. Mey. (Papilionoideae - Fabaceae

    Directory of Open Access Journals (Sweden)

    Débora Aparecida Verde de Andrade

    2008-09-01

    Full Text Available Frutos, sementes e plântulas de Crotalaria lanceolata, conhecida popularmente como guizo-de-cascavel, chocalho-de-cobra, xique-xique ou feijão-de-guizo, planta tóxica infestante que ocorre no Estado de São Paulo, foram estudadas morfologicamente e citogeneticamente. Os frutos são secos, deiscentes, polispérmicos e do tipo legume. As sementes são reniformes e o embrião é constituído de eixo embrionário e dois cotilédones. A testa pode apresentar variadas tonalidades de castanhos. A germinação é epígea e fanerocotiledonar. A espécie apresenta número cromossômico diplóide 2n = 16 com formulação cariotípica 12M + 4SM e comprimento cromossômico médio geral de 3,340 ± 0,689.Crotalaria lanceolata, known popularly as "guizo-de-cascavel", "xique-xique" or "feijão-de-guizo", is a toxic weed that occurs in the state of Sao Paulo. Fruits, seeds and seedlings were studied morphologically and cytogenetically. The fruits are dry, dehiscent, polyspermic legumes. The seeds are kidney shaped and the embryo consists of an embryonic axis and two cotyledons. The seed tegument comes in various chestnut tones. Germination is phanerocotylar and epigeal. The species has a mitotic chromosome number 2n = 16 with karyotype formula 12M + 4SM; overall mean chromosome length is 3.340 ± 0.689.

  12. Soybean cyst nematode culture collections and field populations from North Carolina and Missouri reveal high incidences of infection by viruses.

    Directory of Open Access Journals (Sweden)

    Casey L Ruark

    Full Text Available Five viruses were previously discovered infecting soybean cyst nematodes (SCN; Heterodera glycines from greenhouse cultures maintained in Illinois. In this study, the five viruses [ScNV, ScPV, ScRV, ScTV, and SbCNV-5] were detected within SCN greenhouse and field populations from North Carolina (NC and Missouri (MO. The prevalence and titers of viruses in SCN from 43 greenhouse cultures and 25 field populations were analyzed using qRT-PCR. Viral titers within SCN greenhouse cultures were similar throughout juvenile development, and the presence of viral anti-genomic RNAs within egg, second-stage juvenile (J2, and pooled J3 and J4 stages suggests active viral replication within the nematode. Viruses were found at similar or lower levels within field populations of SCN compared with greenhouse cultures of North Carolina populations. Five greenhouse cultures harbored all five known viruses whereas in most populations a mixture of fewer viruses was detected. In contrast, three greenhouse cultures of similar descent to one another did not possess any detectable viruses and primarily differed in location of the cultures (NC versus MO. Several of these SCN viruses were also detected in Heterodera trifolii (clover cyst and Heterodera schachtii (beet cyst, but not the other cyst, root-knot, or reniform nematode species tested. Viruses were not detected within soybean host plant tissue. If nematode infection with viruses is truly more common than first considered, the potential influence on nematode biology, pathogenicity, ecology, and control warrants continued investigation.

  13. Nuclear characteristics of the endometrial cytology: liquid-based versus conventional preparation.

    Science.gov (United States)

    Norimatsu, Yoshiaki; Shigematsu, Yumie; Sakamoto, Shingo; Ohsaki, Hiroyuki; Yanoh, Kenji; Kawanishi, Namiki; Kobayashi, Tadao K

    2013-02-01

    The aim of this study was to assess the utility of liquid-based cytologic preparation (LP) compared with conventional preparation (CP) for the assessment of nuclear findings in endometrial glandular and stromal breakdown (EGBD) which may be misdiagnosed as carcinoma in EGBD cases. The material consists of cytologic smears including 20 cases of proliferative endometrium (PE), 20 cases of EGBD, and 20 cases of endometrioid adenocarcinoma grade1 (G1) for which histopathological diagnosis was obtained by endometrial curettage at the JA Suzuka General Hospital. Nuclear findings were examined in PE cells, EGBD-stromal cells, EGBD-metaplastic cells, and G1 cells, respectively. It was examined about the following items; (1) nuclear shape; (2) A long/minor axis ratio in cell nuclei; (3) an area of cell nuclei; (4) overlapping nuclei. Results are as follows: (1) nuclear shape; as for the reniform shape of EGBD-stromal cells and spindle shape of EGBD-metaplastic cells, the ratio of the LP method was a higher value than the CP method. (2) The long axis and area of cell nuclei; LP in all groups was a recognizable tendency for nuclear shrinkage. (3) The long/minor axis ratio in cell nuclei; only EGBD-metaplastic cells recognize a significant difference between CP and LP. (4) Overlapping nuclei; LP was a higher value in comparison with CP in the other groups except PE cells, and the degree of overlapping nuclei was enhanced about three times. Therefore, although a cell of LP has a shrinking tendency, (1) it is excellent that LP preserves a characteristic of nuclear shape than CP; (2) a cellular characteristic becomes clearer, because three-dimensional architecture of LP is preserved of than CP. As for the standard preparation method for endometrial cytology samples, we considered that a concrete introduction of the LP method poses no problems. Copyright © 2011 Wiley Periodicals, Inc.

  14. Morfologia das células do sangue periférico em emas (Rhea americana

    Directory of Open Access Journals (Sweden)

    Eunice Anita de Moura Fortes

    2009-06-01

    Full Text Available The rhea (Rhea americana is a South American bird of the ratite group and of the Rheiformes order. It has been exploited for economical purposes, as cattle alternative in European and South American countries. In Brazil, the State of Rio Grande do Sul is outstanding, in rhea rearing and it is in the process of implantation in the Country Northeasty Region. This work aims to describe the morphology of the blood cells in rheas. In this work ten rheas were used, regardless age and sex. Two ml of peripheral blood were collected by puncture of the brachial vein with disposable syringe. The samples here partially used to make extensions with Leishman stain. Seven types of nucleate cells have been observed through morphologic analysis on the light microscope. The erythrocyte revealed an elliptical form, with condensed nucleus of elliptical form; acidophilic cytoplasm. The thrombocyte revealed an elliptical form, with nucleus located in one of the polar regions; pale cytoplasm. As to the round-shaped leukocytes, within the granulocytes, the heterophils presented excentric, condensed, and lobulated nucleus; cytoplasm rich in fusiform salmon-colored granules. The eosinophils distinguish from the heterophils due to the round eosinophilic granules. The basophils stand out from the other granulocytes due to its large and central nucleus with round specific cytoplasmic and highly basophilic granules. Within the agranulocytes, the monocytes presented reniform nucleus, which is frequently central, with slack chromatin, with small areas of condensation; cytoplasm lightly basophilic and with vacuoles. The lymphocytes presented varies forms and sizes; large nucleus with slack chromatin with some nucleoli; scarce and basophilic cytoplasm. The cells of the peripheral blood of Rhea americana present on the light microscope morphology similar to the other birds which have already been studied.

  15. Emplacement of pillow lavas from the ~ 2.8 Ga Chitradurga Greenstone Belt, South India: A physical volcanological, morphometric and geochemical perspective

    Science.gov (United States)

    Duraiswami, Raymond A.; Inamdar, Mustaqueem M.; Shaikh, Tahira N.

    2013-08-01

    The physical volcanology and morphometric analyses of pillowed lava flows from the Chitradurga basin of Chitradurga Greenstone Belt, South India have been undertaken. In the Chitradurga hills individual pillowed flows alternate with massive submarine sheet flows. The pillows from such flows are separated by chert and occur as spheroidal, elongated or reniform units that are devoid of vesicles, vesicle bands or pipe vesicles. The Mardihalli flow is exposed as a small elongated mound in the basin and consists of a massive core that is draped by pillows along the flow crest and flanks. The pillows from Mardihalli occur as spheroidal to elongate units with smooth, spalled or wrinkled surfaces with vesicular interiors. Repeated budding of larger pillows have produced a series of interconnected pillow units indicating fluid lava that was emplaced on steeply dipping flanks. Based on the morphological features the pillowed flows from the Chitradurga basin were emplaced at low effusion rates (≤ 5 m3/s). Pillows in these flows formed from low viscosity lavas that underwent negligible to moderate inflation due to rapid chilling. Sporadic occurrences of pillow breccias, hyaloclastite and chert breccias in the pillowed flow fields indicate disruption of pillows due to lava surges and slumping. It is envisaged that the Chitradurga basin witnessed distinct episodes of submarine tholeiite eruptions that produced pillowed lavas that variably interacted with sea water to produce geochemistries. The field and stratigraphic relationships of the volcanics and associated clastic sediments suggest that the pillow lavas were emplaced in a shallow marine marginal inter/back arc basin.

  16. Dados anatômicos da placenta em caprinos estudado por injeção intravascular de neoprene

    Directory of Open Access Journals (Sweden)

    Willams Costa Neves

    1999-01-01

    Full Text Available Estudamos a placenta quanto aos seus aspectos morfológicos em 30 caprinos sem raça definida, adultos oriundos do Estado do Piauí, mediante a análise de esquemas de modelos obtidos pela injeção de látex Neoprene "650". Obtivemos 17 casos, ou seja, 56,66% de gestações únicas e 13 casos, ou seja, 43,33% de gestações gemelares. A área do hilo placentário varia de 1 a 6 cm de diâmetro e está situada no centro da placenta, região caracterizada pela apresentação do pedículo umbilical. O formato dos cotilédones varia de ovóide, circular, elíptica, piriforme ou reniforme, sendo que a maioria mostra-se ovóide. O número total de cotilédones em 30 gestações é igual a 3.117, sendo a média 104 cotilédones por gestação. Nas gestações únicas em 16 casos (94,11%, o corno uterino gestante apresenta maior número de cotilédones do que o corno uterino não-gestante. Nas gestações gemelares, em 7 observações (53,84%, o corno uterino esquerdo mostra maior número de cotilédones do que o corno uterino direito.

  17. Evolutionary and genomic analysis of the caleosin/peroxygenase (CLO/PXG) gene/protein families in the Viridiplantae.

    Science.gov (United States)

    Rahman, Farzana; Hassan, Mehedi; Rosli, Rozana; Almousally, Ibrahem; Hanano, Abdulsamie; Murphy, Denis J

    2018-01-01

    Bioinformatics analyses of caleosin/peroxygenases (CLO/PXG) demonstrated that these genes are present in the vast majority of Viridiplantae taxa for which sequence data are available. Functionally active CLO/PXG proteins with roles in abiotic stress tolerance and lipid droplet storage are present in some Trebouxiophycean and Chlorophycean green algae but are absent from the small number of sequenced Prasinophyceaen genomes. CLO/PXG-like genes are expressed during dehydration stress in Charophyte algae, a sister clade of the land plants (Embryophyta). CLO/PXG-like sequences are also present in all of the >300 sequenced Embryophyte genomes, where some species contain as many as 10-12 genes that have arisen via selective gene duplication. Angiosperm genomes harbour at least one copy each of two distinct CLO/PX isoforms, termed H (high) and L (low), where H-forms contain an additional C-terminal motif of about 30-50 residues that is absent from L-forms. In contrast, species in other Viridiplantae taxa, including green algae, non-vascular plants, ferns and gymnosperms, contain only one (or occasionally both) of these isoforms per genome. Transcriptome and biochemical data show that CLO/PXG-like genes have complex patterns of developmental and tissue-specific expression. CLO/PXG proteins can associate with cytosolic lipid droplets and/or bilayer membranes. Many of the analysed isoforms also have peroxygenase activity and are involved in oxylipin metabolism. The distribution of CLO/PXG-like genes is consistent with an origin >1 billion years ago in at least two of the earliest diverging groups of the Viridiplantae, namely the Chlorophyta and the Streptophyta, after the Viridiplantae had already diverged from other Archaeplastidal groups such as the Rhodophyta and Glaucophyta. While algal CLO/PXGs have roles in lipid packaging and stress responses, the Embryophyte proteins have a much wider spectrum of roles and may have been instrumental in the colonisation of terrestrial

  18. Kikuchi's lymphadenitis. A morphologic analysis of 75 cases with special reference to unusual features.

    Science.gov (United States)

    Tsang, W Y; Chan, J K; Ng, C S

    1994-03-01

    Seventy-five cases of Kikuchi's lymphadenitis, a self-limiting pseudomalignant condition, were reviewed to determine the spectrum of histologic findings. There were 55 females and 20 males; ages ranged from 9 to 57 years (mean, 25.5). Most patients presented with cervical lymphadenopathy (68 cases). Associated clinical findings were fever (20/52) and leukopenia (15/33). Serum antinuclear antibodies were negative in 15 patients among 16 tested. Among 32 patients with follow-up information, 31 remained well, including one who developed recurrence after 2 years. One patient died of fatal myocardial disease during the active disease. Histologically, the lymph nodes showed paracortical hyperplasia, often associated with a starry-sky appearance resulting from interspersed histiocytes and immunoblasts. The consistent finding was the presence of variable-sized discrete or confluent nodules in the paracortex composed of the following: (a) karyorrhectic and eosinophilic granular debris; (b) histiocytes, many of which were phagocytic and possessed distinctive peripherally placed crescentic nuclei and voluminous cytoplasm containing eosinophilic or karyorrhectic debris (for which we propose the designation crescentic histiocytes), mixed with nonphagocytic histiocytes having twisted or reniform nuclei which were often centrally placed; (c) plasmacytoid monocytes, which were medium-sized cells with eccentrically placed round nuclei and amphophilic cytoplasm; and (d) variable numbers of immunoblasts, which sometimes showed atypia such as irregular nuclear foldings and coarse chromatin. Neutrophils were absent or very sparse. In some nodules, coagulative necrosis was present in the center (45 cases). Foamy histiocytes were found in 23 cases, and they predominated in 11. Small clusters of plasmacytoid monocytes were noted in the paracortex in 40 cases. Perinodal inflammation was a common finding, and perinodal involvement by the karyorrhectic process occurred in 15 cases. In

  19. Three dimensional morphological studies of Larger Benthic Foraminifera at the population level using micro computed tomography

    Science.gov (United States)

    Kinoshita, Shunichi; Eder, Wolfgang; Woeger, Julia; Hohenegger, Johann; Briguglio, Antonino; Ferrandez-Canadell, Carles

    2015-04-01

    birth until the time of collection and to extract selected chambers for further studies. The variation in chamber number during the sampling period (in this study limited at 15 months) will allow the estimation of the mean chamber building rate for each investigated species. However, a number of morphological aberrations within the population can be observed: often multiple proloculi are present; their orientation to the equatorial plane (or planes) respectively the spatial position of the foramina between proloculus (or proloculi) to the reniform deuteroloculi, the geometry of septa and septula and their variation trough ontogeny and several other ontogenetic variation need further attention. Many new insights into the biology of living and fossil LBF will be obtained when the three dimensional morphology of the complete foraminiferal shell is raised to the population level.

  20. A survey of nematodes of the genus Cucullanus Müller, 1777 (Nematoda, Seuratoidea) parasitic in marine fishes off Brazil, including description of three new species.

    Science.gov (United States)

    Vieira, Fabiano M; Pereira, Felipe B; Pantoja, Camila; Soares, Iris A; Pereira, Aldenice N; Timi, Juan T; Scholz, Tomáš; Luque, José L

    2015-11-05

    A taxonomic survey of six nematode species (including three new taxa) from the genus Cucullanus Müller, 1777, parasites of marine fishes off the Brazilian coast, is provided. Nematodes were studied using light and scanning electron microscopy (SEM). Cucullanus gastrophysi n. sp. parasitic in Lophius gastrophysus Miranda Ribeiro differs from its congeners by the combination of the following features: shape and number of sclerotized structures in the oesophastome (a pair of lateral elongate structures and a single small reniform one), position of deirids and excretory pore (both anterior to oesophagus base), spicule length and spicule/body length ratio (0.97-1.29 mm and 6.5-10.5%, respectively), morphology and length of gubernaculum (V-shaped, 107-135 µm long). Cucullanus protrudens n. sp. from Pagrus pagrus (Linnaeus) has the cloacal lips broadly protruded, which differentiates it from several species of Cucullanus; other features, e.g., the length of spicules and gubernaculum (400-415 µm and 91-103 µm, respectively), arrangement of caudal papillae and position of excretory pore (slightly posterior to oesophagus-intestine junction) also characterize this species. Cucullanus pseudopercis n. sp. from Pseudopercis semifasciata (Cuvier) has deirids and excretory pore posterior to the oesophagus-intestine junction, which distinguishes the species from most of the congeners; furthermore, the arrangement of caudal papillae in combination with the length of spicules and gubernaculum (1.0-1.5 mm and 178-196 µm, respectively) separate this species from other taxa. Newly collected specimens of C. cirratus Müller, 1777 (type species of the genus) from Urophycis brasiliensis (Kaup), C. pedroi from Conger orbignianus Valenciennes (type host of the species) and C. genypteri Sardella, Navone & Timi, 1997 from Genypterus brasiliensis Regan, were studied as well. Comparisons between newly collected samples and the taxonomic data available for each respective species revealed

  1. Comparative analysis of the corps en cerise in several species of Laurencia (Ceramiales, Rhodophyta from the Atlantic Ocean

    Directory of Open Access Journals (Sweden)

    Mutue T. Fujii

    2012-08-01

    Full Text Available Different species of Laurencia have proven to be a rich source of natural products yielding interesting bioactive halogenated secondary metabolites, such as terpenoids and acetogenins. It is shown that such compounds are accumulated in the spherical, reniform to claviform refractive inclusions called corps en cerise (CC, which are intensively osmiophilic and located mainly in the cortical cells of the thalli and also in trichoblast cells. Up to now, it was believed that CC were present only in these two kinds of cells. Recently, however, a species of Laurencia, L. marilzae, with CC in all cells of the thallus, i.e., cortical, medullary, including the pericentral and axial cells, as well as in the trichoblasts, was described from the Canary Islands, and subsequently also reported to Brazil and Mexico. Within the Laurencia complex, only Laurencia species produce CC. Since the species of Laurencia are targets of interest for the prospection of bioactive substances due to their potential antibacterial, antifungal, anticholinesterasic, antileishmanial, cytotoxic, and antioxidant activities, the present paper carries out a comparative analysis of the corps en cerise in several species of Laurencia from the Atlantic Ocean to obtain basic information that can support natural product bioprospection projects. Our results show that the number and size of the CC are constant within a species, independent of the geographical distribution, corroborating their use for taxonomical purposes to differentiate groups of species that present a lower number from those that have a higher number. In this regard, there was a tendency for the number of CC to be higher in some species of Laurencia from the Canary Islands. The presence of CC can also be used to distinguish species in which these organelles are present in all cells of the thallus from those in which CC are restricted to the cortical cells. Among the species analyzed, L. viridis displayed the most varied

  2. Morfo-anatomia de plântulas e número cromossômico de Cybistax antisyphilitica (Mart. Mart. (Bignoniaceae Seedling morpho-anatomy and chromosome number of Cybistax antisyphilitica (Mart. Mart. (Bignoniaceae

    Directory of Open Access Journals (Sweden)

    Flavia Aparecida Ortolani

    2008-06-01

    Full Text Available Plântulas de Cybistax antisyphilitica (ipê-verde, espécie arbórea que ocorre no Estado de São Paulo, Brasil, foram estudadas morfoanatomicamente e citogeneticamente. As plântulas são eudicotiledôneas, fanerocotiledonares e epigéias. Suas sementes apresentam alas hialinas, assimétricas e de textura papirácea. A raiz é axial com tecido epidérmico irregular. O hipocótilo é verde, glabro e apresenta os elementos do xilema em diferenciação. Os cotilédones são verdes, foliáceos, reniformes, com mesofilo heterogêneo, epiderme pilosa e feixes vasculares colaterais. Os eófilos são glabros, peciolados, de filotaxia oposta, dorsiventrais, hipoestomáticos e possuem mesofilo heterogêneo e assimétrico. Não há diferenças anatômicas significativas entre os eófilos e os metáfilos. O sistema vascular do pecíolo dos metáfilos dispõe-se em forma de ferradura. A espécie apresenta número cromossômico mitótico 2n = 40 com comprimento cromossômico geral médio de 1,042 µm ± 0,140 e amplitude variando de 0,58 µm até 1,60 µm.Seedlings of Cybistax antisyphilitica ("ipê-verde", a tree species found in the state of São Paulo, Brazil, were studied as regards morphology, anatomy and cytogenetics. The seedlings are eudicotyledonous, phanerocotylar, epigeous and the seeds have hyaline, asymmetric, paper-textured expansions. The root system is axial with irregular epidermal tissue. The hypocotyl is green, glabrous and has differentiated xylem elements. The cotyledons are green, foliaceous, kidney-shaped, with heterogeneous mesophyll, pilose epidermis and collateral vascular bundles. The eophylls are petiolate, glabrous, with opposite phyllotaxy, dorsiventral, hypostomatic and with heterogeneous, asymmetric mesophyll. There are no significant anatomical differences between eophylls and metaphylls. The metaphyll petiole vascular system is shaped like a horseshoe. The species has a mitotic chromosome number 2n = 40 with average overall

  3. Orbital-scale Central Arctic Ocean Temperature Records from Benthic Foraminiferal δ18O and Ostracode Mg/Ca Ratios

    Science.gov (United States)

    Keller, K.; Cronin, T. M.; Dwyer, G. S.; Farmer, J. R.; Poirier, R. K.; Schaller, M. F.

    2017-12-01

    Orbital-scale climate variability is often amplified in the polar region, for example in changes in seawater temperature, sea-ice cover, deep-water formation, ecosystems, heat storage and carbon cycling. Yet, the relationship between the Arctic Ocean and global climate remains poorly understood due largely to limited orbital-scale paleoclimate records, the complicated nature of sea-ice response to climate and limited abundance of deep sea biological proxies. Here we reconstruct central Arctic Ocean bottom temperatures over the last 600 kyr using ostracode Mg/Ca ratios (genus Krithe) and benthic foraminiferal oxygen isotope ratios (δ18Obf - I. teretis, O. tener, P. bulloides, C. reniforme, C. wuellerstorfi) in six sediment cores recovered from the Mendeleev and Northwind Ridges (700- 2726 m water depth). We examined glacial-interglacial cycles in Arctic seawater temperatures and Arctic δ18Obf chronostratigraphy to reconcile effects of changing bottom water temperature, ice volume and regional hydrography on δ18Obf records. Results show lower ( 10-12 mmol/mol) interglacial and higher ( 16-23 mmol/mol) glacial Mg/Ca ratios, signifying intermediate depth ocean warming during glacials of up to 2 ºC. These temperature maxima are likely related to a deepening of the halocline and the corresponding deeper influence of warm Atlantic water. Glacial-interglacial δ18Obf ranges are smaller in the Arctic ( 0.8-1‰ VPDB) than in the global ocean ( 1.8 ‰). However, when the distinct glacial-interglacial temperature histories of the Arctic (glacial warming) and global ocean (glacial cooling) are accounted for, both Arctic and global ocean seawater δ18O values (δ18Osw) exhibit similar 1.2-1.3 ‰ glacial-interglacial ranges. Thus, Arctic δ18Obf confirms glacial Arctic warming inferred from ostracode Mg/Ca. This study will discuss the strengths and limitations of applying paired Mg/Ca and oxygen isotope proxies in reconstructing more robust paleoceanographic changes in the

  4. Estudos morfoanatômicos da semente e da plântula de espécies de Anileiras (Indigofera L., Leguminosae Morpho-anatomical studies of seeds and seedlings of wild indigo, "anileira", Indigofera- Leguminosae

    Directory of Open Access Journals (Sweden)

    Juliana Villela Paulino

    2010-03-01

    Full Text Available O nome popular "anileira" designa Indigofera anil L., I. suffruticosa Mill. e I. truxillensis Kunth, muito semelhantes quanto à morfologia externa. Este trabalho teve por objetivo avaliar se caracteres da semente e plântula apresentavam valor diagnóstico para este grupo, já que tais caracteres têm sido muito utilizados na Taxonomia de Leguminosae. A superfície e morfoanatomia de sementes e cotilédones foram estudadas por microscopias eletrônica de varredura e de luz, e as etapas do desenvolvimento das plântulas descritas. Embora as plântulas sejam semelhantes, caracteres de sementes (tamanho, forma, ornamentação da superfície, forma do hilo e tamanho do embrião e cotilédones (forma, organização do parênquima lacunoso na nervura central e distribuição de metabólitos nos tecidos apresentaram valor diagnóstico para as espécies. I. anil distingue-se de I. suffruticosa por suas sementes maiores e cotilédones com borda acuminada. I. truxillensis caracteriza-se por apresentar sementes cilíndricas e cotilédones reniformes contendo gotas de óleo e alcalóides. Nossos dados, a morfologia externa dos frutos (curvos em I. anil e I. suffruticosa, e retos em I. truxillensis e, ainda, a anatomia foliar (células parenquimáticas grandes e fenólicas no floema de I. suffruticosa e sua ausência em I. anil sugerem que I. anil, I. suffruticosa e I. truxillensis não devem ser sinonimizadas.The common name "wild indigo" specifies Indigofera anil L., I. suffruticosa Mill. (legitimate name and I. truxillensis Kunth (legitimate name that are very similar due to their external morphology. This work analyzed diagnostic characteristics of seeds and seedlings of these species since such features are widely used in taxonomic approaches within Leguminosae. We studied surface features and morpho-anatomy of seeds and cotyledons with scanning electronic microscopy and light microscopy, and described seedling phases. Although seedlings are similar