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Sample records for related homeobox sequestration

  1. Extensive expression of craniofacial related homeobox genes in canine mammary sarcomas

    NARCIS (Netherlands)

    Wensman, H.; Goransson, H.; Leuchowius, K.J.; Stromberg, S.; Ponten, F.; Isaksson, A.; Rutteman, G.R.; Heldin, N.; Pejler, G.; Hellmen, E.

    2009-01-01

    Extensive expression of craniofacial related homeobox genes in canine mammary sarcomas Journal Breast Cancer Research and Treatment Publisher Springer Netherlands ISSN 0167-6806 (Print) 1573-7217 (Online) Issue Volume 118, Number 2 / November, 2009 Category Preclinical Study DOI

  2. Contribution of WUSCHEL-related homeobox (WOX genes to identify the phylogenetic relationships among Petunia species

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    Ana Lúcia Anversa Segatto

    Full Text Available Abstract Developmental genes are believed to contribute to major changes during plant evolution, from infrageneric to higher levels. Due to their putative high sequence conservation, developmental genes are rarely used as molecular markers, and few studies including these sequences at low taxonomic levels exist. WUSCHEL-related homeobox genes (WOX are transcription factors exclusively present in plants and are involved in developmental processes. In this study, we characterized the infrageneric genetic variation of Petunia WOX genes. We obtained phylogenetic relationships consistent with other phylogenies based on nuclear markers, but with higher statistical support, resolution in terminals, and compatibility with flower morphological changes.

  3. Origins and Evolution of WUSCHEL-Related Homeobox Protein Family in Plant Kingdom

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    Gaibin Lian

    2014-01-01

    Full Text Available WUSCHEL-related homeobox (WOX is a large group of transcription factors specifically found in plants. WOX members contain the conserved homeodomain essential for plant development by regulating cell division and differentiation. However, the evolutionary relationship of WOX members in plant kingdom remains to be elucidated. In this study, we searched 350 WOX members from 50 species in plant kingdom. Linkage analysis of WOX protein sequences demonstrated that amino acid residues 141–145 and 153–160 located in the homeodomain are possibly associated with the function of WOXs during the evolution. These 350 members were grouped into 3 clades: the first clade represents the conservative WOXs from the lower plant algae to higher plants; the second clade has the members from vascular plant species; the third clade has the members only from spermatophyte species. Furthermore, among the members of Arabidopsis thaliana and Oryza sativa, we observed ubiquitous expression of genes in the first clade and the diversified expression pattern of WOX genes in distinct organs in the second clade and the third clade. This work provides insight into the origin and evolutionary process of WOXs, facilitating their functional investigations in the future.

  4. Evolution of homeobox genes.

    Science.gov (United States)

    Holland, Peter W H

    2013-01-01

    Many homeobox genes encode transcription factors with regulatory roles in animal and plant development. Homeobox genes are found in almost all eukaryotes, and have diversified into 11 gene classes and over 100 gene families in animal evolution, and 10 to 14 gene classes in plants. The largest group in animals is the ANTP class which includes the well-known Hox genes, plus other genes implicated in development including ParaHox (Cdx, Xlox, Gsx), Evx, Dlx, En, NK4, NK3, Msx, and Nanog. Genomic data suggest that the ANTP class diversified by extensive tandem duplication to generate a large array of genes, including an NK gene cluster and a hypothetical ProtoHox gene cluster that duplicated to generate Hox and ParaHox genes. Expression and functional data suggest that NK, Hox, and ParaHox gene clusters acquired distinct roles in patterning the mesoderm, nervous system, and gut. The PRD class is also diverse and includes Pax2/5/8, Pax3/7, Pax4/6, Gsc, Hesx, Otx, Otp, and Pitx genes. PRD genes are not generally arranged in ancient genomic clusters, although the Dux, Obox, and Rhox gene clusters arose in mammalian evolution as did several non-clustered PRD genes. Tandem duplication and genome duplication expanded the number of homeobox genes, possibly contributing to the evolution of developmental complexity, but homeobox gene loss must not be ignored. Evolutionary changes to homeobox gene expression have also been documented, including Hox gene expression patterns shifting in concert with segmental diversification in vertebrates and crustaceans, and deletion of a Pitx1 gene enhancer in pelvic-reduced sticklebacks. WIREs Dev Biol 2013, 2:31-45. doi: 10.1002/wdev.78 For further resources related to this article, please visit the WIREs website. The author declares that he has no conflicts of interest. Copyright © 2012 Wiley Periodicals, Inc.

  5. Paired related homeobox 1 transactivates dopamine D2 receptor to maintain propagation and tumorigenicity of glioma-initiating cells

    Institute of Scientific and Technical Information of China (English)

    Yamu Li; Ying Liu; Shu Li; Xiaobing Jiang; Guangwei Du; Yan Zhou; Wen Wang; Fangyu Wang; Qiushuang Wu; Wei Li; Xiaoling Zhong; Kuan Tian; Tao Zeng; Liang Gao

    2017-01-01

    Glioblastoma multiforme (GBM) is a highly invasive brain tumor with limited therapeutic means and poor prognosis.Recent studies indicate that glioma-initiating cells/glioma stem cells (GICs/GSCs) may be responsible for tumor initiation,infiltration,and recurrence.GlCs could aberrantly employ molecular machinery balancing self-renewal and differentiation of embryonic neural precursors.Here,we find that paired related homeobox 1 (PRRX1),a homeodomain transcription factor that was previously reported to control skeletal development,is expressed in cortical neural progenitors and is required for their self-renewal and proper differentiation.Further,PRRX1 is overrepresented in glioma samples and labels GlCs.Glioma cells and GlCs depleted with PRRX1 could not propagate in vitro or form tumors in the xenograft mouse model.The GIC self-renewal function regulated by PRRX1 is mediated by dopamine D2 receptor (DRD2).PRRX1 directly binds to the DRD2 promoter and transactivates its expression in GlCs.Blockage of the DRD2 signaling hampers GIC self-renewal,whereas its overexpression restores the propagating and tumorigenic potential of PRRX1-depleted GlCs.Finally,PRRX1 potentiates GlCs via DRD2-mediated extracellular signal-related kinase (ERK) and AKT activation.Thus,our study suggests that therapeutic targeting the PRRX1-DRD2-ERK/AKT axis in GlCs is a promising strategy for treating GBMs.

  6. Prospero-related homeobox 1 (Prox1 at the crossroads of diverse pathways during adult neural fate specification

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    Athanasios eStergiopoulos

    2015-01-01

    Full Text Available Over the last decades, adult neurogenesis in the central nervous system (CNS has emerged as a fundamental process underlying physiology and disease. Recent evidence indicates that the homeobox transcription factor Prox1 is a critical intrinsic regulator of neurogenesis in the embryonic CNS and adult dentate gyrus (DG of the hippocampus, acting in multiple ways and instructed by extrinsic cues and intrinsic factors. In the embryonic CNS, Prox1 is mechanistically involved in the regulation of proliferation versus differentiation decisions of NSCs, promoting cell cycle exit and neuronal differentiation, while inhibits astrogliogenesis. During the complex differentiation events in adult hippocampal neurogenesis, Prox1 is required for maintenance of intermediate progenitors (IPs, differentiation and maturation of glutamatergic interneurons, as well as specification of DG cell identity over CA3 pyramidal fate. The mechanism by which Prox1 exerts multiple functions involves distinct signaling pathways currently not fully highlighted. In this mini-review, we thoroughly discuss the Prox1-dependent phenotypes and molecular pathways in adult neurogenesis in relation to different upstream signaling cues and cell fate determinants. In addition, we discuss the possibility that Prox1 may act as a cross-talk point between diverse signaling cascades to achieve specific outcomes during adult neurogenesis.

  7. Analysis of the WUSCHEL-RELATED HOMEOBOX gene family in Pinus pinaster: New insights into the gene family evolution.

    Science.gov (United States)

    Alvarez, José M; Bueno, Natalia; Cañas, Rafael A; Avila, Concepción; Cánovas, Francisco M; Ordás, Ricardo J

    2018-02-01

    WUSCHEL-RELATED HOMEOBOX (WOX) genes are key players controlling stem cells in plants and can be divided into three clades according to the time of their appearance during plant evolution. Our knowledge of stem cell function in vascular plants other than angiosperms is limited, they separated from gymnosperms ca 300 million years ago and their patterning during embryogenesis differs significantly. For this reason, we have used the model gymnosperm Pinus pinaster to identify WOX genes and perform a thorough analysis of their gene expression patterns. Using transcriptomic data from a comprehensive range of tissues and stages of development we have shown three major outcomes: that the P. pinaster genome encodes at least fourteen members of the WOX family spanning all the major clades, that the genome of gymnosperms contains a WOX gene with no homologues in angiosperms representing a transitional stage between intermediate- and WUS-clade proteins, and that we can detect discrete WUS and WOX5 transcripts for the first time in a gymnosperm. Copyright © 2017 Elsevier Masson SAS. All rights reserved.

  8. Dwarf Tiller1, a Wuschel-related homeobox transcription factor, is required for tiller growth in rice.

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    Wenfei Wang

    2014-03-01

    Full Text Available Unlike many wild grasses, domesticated rice cultivars have uniform culm height and panicle size among tillers and the main shoot, which is an important trait for grain yield. However, the genetic basis of this trait remains unknown. Here, we report that Dwarf Tiller1 (DWT1 controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa. Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type. In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a Wuschel-related homeobox (WOX transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA treatment, and some of the slender rice1 (slr1 dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice.

  9. DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice

    Science.gov (United States)

    Wang, Wenfei; Li, Gang; Zhao, Jun; Chu, Huangwei; Lin, Wenhui; Zhang, Dabing; Wang, Zhiyong; Liang, Wanqi

    2014-01-01

    Unlike many wild grasses, domesticated rice cultivars have uniform culm height and panicle size among tillers and the main shoot, which is an important trait for grain yield. However, the genetic basis of this trait remains unknown. Here, we report that DWARF TILLER1 (DWT1) controls the developmental uniformity of the main shoot and tillers in rice (Oryza sativa). Most dwt1 mutant plants develop main shoots with normal height and larger panicles, but dwarf tillers bearing smaller panicles compared with those of the wild type. In addition, dwt1 tillers have shorter internodes with fewer and un-elongated cells compared with the wild type, indicating that DWT1 affects cell division and cell elongation. Map-based cloning revealed that DWT1 encodes a WUSCHEL-related homeobox (WOX) transcription factor homologous to the Arabidopsis WOX8 and WOX9. The DWT1 gene is highly expressed in young panicles, but undetectable in the internodes, suggesting that DWT1 expression is spatially or temporally separated from its effect on the internode growth. Transcriptomic analysis revealed altered expression of genes involved in cell division and cell elongation, cytokinin/gibberellin homeostasis and signaling in dwt1 shorter internodes. Moreover, the non-elongating internodes of dwt1 are insensitive to exogenous gibberellin (GA) treatment, and some of the slender rice1 (slr1) dwt1 double mutant exhibits defective internodes similar to the dwt1 single mutant, suggesting that the DWT1 activity in the internode elongation is directly or indirectly associated with GA signaling. This study reveals a genetic pathway synchronizing the development of tillers and the main shoot, and a new function of WOX genes in balancing branch growth in rice. PMID:24625559

  10. Comparative Analysis of WUSCHEL-Related Homeobox Genes Revealed Their Parent-of-Origin and Cell Type-Specific Expression Pattern During Early Embryogenesis in Tobacco

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    Xuemei Zhou

    2018-03-01

    Full Text Available WUSCHEL-related homeobox (WOX gene is a plant-specific clade of homeobox transcription factors. Increasing evidences reveal that WOXs play critical roles in early embryogenesis, which involves zygote development, initiation of zygote division, and apical or basal cell lineage establishment. However, how WOXs regulate these developmental events remains largely unknown, and even detailed expression pattern in gametes and early proembryos is not yet available. Here, 13 WOX family genes were identified in Nicotiana tabacum genome. Comparative analysis of 13 WOX family genes with their homologs in Arabidopsis thaliana reveals relatively conserved expression pattern of WUS and WOX5 in shoot/root apical meristem. Whereas variations were also found, e.g., lacking homolog of WOX8 (a marker for suspensor cell in tobacco genome and the expression of WOX2/WOX9 in both apical cell and basal cell. Transient transcriptional activity analysis revealed that WOXs in WUS clade have repressive activities for their target's transcription, whereas WOXs in ancient and intermediate clade have activation activities, giving a molecular basis for the phylogenetic classification of tobacco WOXs into three major clades. Expression pattern analysis revealed that some WOXs (e.g., WOX 13a expressed in both male and female gametes and some WOXs (e.g., WOX 11 and WOX 13b displayed the characteristics of parent-of-origin genes. Interestingly, some WOXs (e.g., WOX2 and WOX9, which are essential for early embryo patterning, were de novo transcribed in zygote, indicating relevant mechanism for embryo pattern formation is only established in zygote right after fertilization and not carried in by gametes. We also found that most WOXs displayed a stage-specific and cell type-specific expression pattern. Taken together, this work provides a detailed landscape of WOXs in tobacco during fertilization and early embryogenesis, which will facilitate the understanding of their specific roles

  11. Homeobox genes and melatonin synthesis

    DEFF Research Database (Denmark)

    Rohde, Kristian; Møller, Morten; Rath, Martin Fredensborg

    2014-01-01

    Nocturnal synthesis of melatonin in the pineal gland is controlled by a circadian rhythm in arylalkylamine N-acetyltransferase (AANAT) enzyme activity. In the rodent, Aanat gene expression displays a marked circadian rhythm; release of norepinephrine in the gland at night causes a cAMP-based indu......Nocturnal synthesis of melatonin in the pineal gland is controlled by a circadian rhythm in arylalkylamine N-acetyltransferase (AANAT) enzyme activity. In the rodent, Aanat gene expression displays a marked circadian rhythm; release of norepinephrine in the gland at night causes a c......AMP-based induction of Aanat transcription. However, additional transcriptional control mechanisms exist. Homeobox genes, which are generally known to encode transcription factors controlling developmental processes, are also expressed in the mature rodent pineal gland. Among these, the cone-rod homeobox (CRX......) transcription factor is believed to control pineal-specific Aanat expression. Based on recent advances in our understanding of Crx in the rodent pineal gland, we here suggest that homeobox genes play a role in adult pineal physiology both by ensuring pineal-specific Aanat expression and by facilitating c...

  12. Uncertainties in relation to CO2 capture and sequestration. Preliminary results. Working Paper

    International Nuclear Information System (INIS)

    Gielen, D.

    2003-03-01

    This paper has been presented at an expert meeting on CO2 capture technology learning at the IEA headquarters, January 24th, 2003. The electricity sector is a key source of CO2 emissions and a strong increase of emissions is forecast in a business-as-usual scenario. A range of strategies have been proposed to reduce these emissions. This paper focuses on one of the promising strategies, CO2 capture and storage. The future role of CO2 capture in the electricity sector has been assessed, using the Energy Technology Perspectives model (ETP). Technology data have been collected and reviewed in cooperation with the IEA Greenhouse Gas R and D implementing agreement and other expert groups. CO2 capture and sequestration is based on relatively new technology. Therefore, its characteristics and its future role in the energy system is subject to uncertainties, as for any new technology. The analysis suggests that the choice of a reference electricity production technology and the characteristics of the CO2 storage option constitute the two main uncertainties, apart from a large number of other factors of lesser importance. Based on the choices made cost estimates can range from less than zero USD for coal fired power plants to more than 150 USD per ton of CO2 for gas fired power plants. The results suggest that learning effects are important, but they do not affect the CO2 capture costs significantly, other uncertainties dominate the cost estimates. The ETP model analysis, where choices are based on the ideal market hypothesis and rational price based decision making, suggest up to 18% of total global electricity production will be equipped with CO2 capture by 2040, in case of a penalty of 50 US$ per ton of CO2. However this high penetration is only achieved in case coal fired IGCC-SOFC power plants are developed successfully. Without such technology only a limited amount of CO2 is captured from gas fired power plants. Higher penalties may result in a higher share of CO2

  13. Planarian homeobox genes: cloning, sequence analysis, and expression.

    Science.gov (United States)

    Garcia-Fernàndez, J; Baguñà, J; Saló, E

    1991-01-01

    Freshwater planarians (Platyhelminthes, Turbellaria, and Tricladida) are acoelomate, triploblastic, unsegmented, and bilaterally symmetrical organisms that are mainly known for their ample power to regenerate a complete organism from a small piece of their body. To identify potential pattern-control genes in planarian regeneration, we have isolated two homeobox-containing genes, Dth-1 and Dth-2 [Dugesia (Girardia) tigrina homeobox], by using degenerate oligonucleotides corresponding to the most conserved amino acid sequence from helix-3 of the homeodomain. Dth-1 and Dth-2 homeodomains are closely related (68% at the nucleotide level and 78% at the protein level) and show the conserved residues characteristic of the homeodomains identified to data. Similarity with most homeobox sequences is low (30-50%), except with Drosophila NK homeodomains (80-82% with NK-2) and the rodent TTF-1 homeodomain (77-87%). Some unusual amino acid residues specific to NK-2, TTF-1, Dth-1, and Dth-2 can be observed in the recognition helix (helix-3) and may define a family of homeodomains. The deduced amino acid sequences from the cDNAs contain, in addition to the homeodomain, other domains also present in various homeobox-containing genes. The expression of both genes, detected by Northern blot analysis, appear slightly higher in cephalic regions than in the rest of the intact organism, while a slight increase is detected in the central period (5 days) or regeneration. Images PMID:1714599

  14. Homeobox Genes in the Rodent Pineal Gland

    DEFF Research Database (Denmark)

    Rath, Martin Fredensborg; Rohde, Kristian; Klein, David C

    2013-01-01

    The pineal gland is a neuroendocrine gland responsible for nocturnal synthesis of melatonin. During early development of the rodent pineal gland from the roof of the diencephalon, homeobox genes of the orthodenticle homeobox (Otx)- and paired box (Pax)-families are expressed and are essential...... for normal pineal development consistent with the well-established role that homeobox genes play in developmental processes. However, the pineal gland appears to be unusual because strong homeobox gene expression persists in the pineal gland of the adult brain. Accordingly, in addition to developmental...... functions, homeobox genes appear to be key regulators in postnatal phenotype maintenance in this tissue. In this paper, we review ontogenetic and phylogenetic aspects of pineal development and recent progress in understanding the involvement of homebox genes in rodent pineal development and adult function...

  15. Homeobox gene expression in Brachiopoda

    DEFF Research Database (Denmark)

    Altenburger, Andreas; Martinez, Pedro; Wanninger, Andreas

    2011-01-01

    (ectoderm) specification with co-opted functions in notochord formation in chordates and left/right determination in ambulacrarians and vertebrates. The caudal ortholog, TtrCdx, is first expressed in the ectoderm of the gastrulating embryo in the posterior region of the blastopore. Its expression stays......The molecular control that underlies brachiopod ontogeny is largely unknown. In order to contribute to this issue we analyzed the expression pattern of two homeobox containing genes, Not and Cdx, during development of the rhynchonelliform (i.e., articulate) brachiopod Terebratalia transversa...... completion of larval development, which is marked by a three-lobed body with larval setae. Expression starts at gastrulation in two areas lateral to the blastopore and subsequently extends over the animal pole of the gastrula. With elongation of the gastrula, expression at the animal pole narrows to a small...

  16. Progerin sequestration of PCNA promotes replication fork collapse and mislocalization of XPA in laminopathy-related progeroid syndromes.

    Science.gov (United States)

    Hilton, Benjamin A; Liu, Ji; Cartwright, Brian M; Liu, Yiyong; Breitman, Maya; Wang, Youjie; Jones, Rowdy; Tang, Hui; Rusinol, Antonio; Musich, Phillip R; Zou, Yue

    2017-09-01

    Hutchinson-Gilford progeria syndrome (HGPS) is a rare genetic disorder that is caused by a point mutation in the LMNA gene, resulting in production of a truncated farnesylated-prelamin A protein (progerin). We previously reported that XPA mislocalized to the progerin-induced DNA double-strand break (DSB) sites, blocking DSB repair, which led to DSB accumulation, DNA damage responses, and early replication arrest in HGPS. In this study, the XPA mislocalization to DSBs occurred at stalled or collapsed replication forks, concurrent with a significant loss of PCNA at the forks, whereas PCNA efficiently bound to progerin. This PCNA sequestration likely exposed ds-ssDNA junctions at replication forks for XPA binding. Depletion of XPA or progerin each significantly restored PCNA at replication forks. Our results suggest that although PCNA is much more competitive than XPA in binding replication forks, PCNA sequestration by progerin may shift the equilibrium to favor XPA binding. Furthermore, we demonstrated that progerin-induced apoptosis could be rescued by XPA, suggesting that XPA-replication fork binding may prevent apoptosis in HGPS cells. Our results propose a mechanism for progerin-induced genome instability and accelerated replicative senescence in HGPS.-Hilton, B. A., Liu, J., Cartwright, B. M., Liu, Y., Breitman, M., Wang, Y., Jones, R., Tang, H., Rusinol, A., Musich, P. R., Zou, Y. Progerin sequestration of PCNA promotes replication fork collapse and mislocalization of XPA in laminopathy-related progeroid syndromes. © FASEB.

  17. ANNUAL AND DIURNAL CYCLES OF THE INVERSE RELATION BETWEEN PLANT TRANSPIRATION AND CARBON SEQUESTRATION

    Directory of Open Access Journals (Sweden)

    Hernán Alonso Moreno

    2008-07-01

    Full Text Available Understanding biogeochemical cycles and especially carbon budgets is clue to validate global change models in the present and near future. As a consequence, sinks and sources of carbon in the world are being studied. One of those sinks is the non-well known behavior of the planet vegetation which involves the processes of photosynthesis and respiration. Carbon sequestration rates are highly related to the transpiration through a molecular diffusion process occurring at the stomatal level which can be recorded by an eddy covariance micrometeorological station. This paper explores annual and diurnal cycles of latent heat (LE and CO2 net (FC fluxes over 6 different ecosystems. Based on the physics of the transpiration process, different time-scale analysis are performed, finding a near-linear relation between LE and CO2 net fluxes, which is stronger at the more vegetated areas. The North American monsoon season increases carbon up taking and LE-CO2 flux relation preserves at different time scales analysis (hours to days to months.El conocimiento de los ciclos biogeoquímicos y, en especial, de los balances de carbono es clave para la validación de los modelos de cambio global para el presente y el futuro cercano. Como consecuencia, en el mundo se estudian las fuentes y los sumideros de carbono. Uno de esos sumideros es la vegetación del planeta, que involucra los procesos de respiración y fotosíntesis y cuyo comportamiento se empieza a estudiar. Las tasas de captura del carbono están muy ligadas a la transpiración mediante un proceso de difusión molecular en los estomas, que puede registrarse por un sistema micrometeorológico de eddy covarianza. Este artículo explora los ciclos anuales y diurnos de los flujos netos de CO2 y calor latente de seis ecosistemas diferentes. Se desarrollan diversos análisis de escala temporal, basados en la física de la transpiración, y se halla una relación cuasilineal entre los flujos netos de calor

  18. Msx homeobox gene family and craniofacial development.

    Science.gov (United States)

    Alappat, Sylvia; Zhang, Zun Yi; Chen, Yi Ping

    2003-12-01

    Vertebrate Msx genes are unlinked, homeobox-containing genes that bear homology to the Drosophila muscle segment homeobox gene. These genes are expressed at multiple sites of tissue-tissue interactions during vertebrate embryonic development. Inductive interactions mediated by the Msx genes are essential for normal craniofacial, limb and ectodermal organ morphogenesis, and are also essential to survival in mice, as manifested by the phenotypic abnormalities shown in knockout mice and in humans. This review summarizes studies on the expression, regulation, and functional analysis of Msx genes that bear relevance to craniofacial development in humans and mice. Key words: Msx genes, craniofacial, tooth, cleft palate, suture, development, transcription factor, signaling molecule.

  19. Use of relational databases to evaluate regional petroleum accumulation, groundwater flow, and CO2 sequestration in Kansas

    Science.gov (United States)

    Carr, T.R.; Merriam, D.F.; Bartley, J.D.

    2005-01-01

    Large-scale relational databases and geographic information system tools are used to integrate temperature, pressure, and water geo-chemistry data from numerous wells to better understand regional-scale geothermal and hydrogeological regimes of the lower Paleozoic aquifer systems in the mid-continent and to evaluate their potential for geologic CO2 sequestration. The lower Paleozoic (Cambrian to Mississippian) aquifer systems in Kansas, Missouri, and Oklahoma comprise one of the largest regional-scale saline aquifer systems in North America. Understanding hydrologic conditions and processes of these regional-scale aquifer systems provides insight to the evolution of the various sedimentary basins, migration of hydrocarbons out of the Anadarko and Arkoma basins, and the distribution of Arbuckle petroleum reservoirs across Kansas and provides a basis to evaluate CO2 sequestration potential. The Cambrian and Ordovician stratigraphic units form a saline aquifer that is in hydrologic continuity with the freshwater recharge from the Ozark plateau and along the Nemaha anticline. The hydrologic continuity with areas of freshwater recharge provides an explanation for the apparent underpressure in the Arbuckle Group. Copyright ?? 2005. The American Association of Petroleum Geologists. All rights reserved.

  20. Stabilization of carbon in composts and biochars in relation to carbon sequestration and soil fertility

    International Nuclear Information System (INIS)

    Bolan, N.S.; Kunhikrishnan, A.; Choppala, G.K.; Thangarajan, R.; Chung, J.W.

    2012-01-01

    There have been increasing interests in the conversion of organic residues into biochars in order to reduce the rate of decomposition, thereby enhancing carbon (C) sequestration in soils. However energy is required to initiate the pyrolysis process during biochar production which can also lead to the release of greenhouse gasses. Alternative methods can be used to stabilize C in composts and other organic residues without impacting their quality. The objectives of this study include: (i) to compare the rate of decomposition among various organic amendments and (ii) to examine the effect of clay materials on the stabilization of C in organic amendments. The decomposition of a number of organic amendments (composts and biochars) was examined by monitoring the release of carbon-dioxide using respiration experiments. The results indicated that the rate of decomposition as measured by half life (t 1/2 ) varied between the organic amendments and was higher in sandy soil than in clay soil. The half life value ranged from 139 days in the sandy soil and 187 days in the clay soil for poultry manure compost to 9989 days for green waste biochar. Addition of clay materials to compost decreased the rate of decomposition, thereby increasing the stabilization of C. The half life value for poultry manure compost increased from 139 days to 620, 806 and 474 days with the addition of goethite, gibbsite and allophane, respectively. The increase in the stabilization of C with the addition of clay materials may be attributed to the immobilization of C, thereby preventing it from microbial decomposition. Stabilization of C in compost using clay materials did not impact negatively the value of composts in improving soil quality as measured by potentially mineralizable nitrogen and microbial biomass carbon in soil. - Graphical abstract: Stabilization of compost using clay materials (e.g. allophane) enhances carbon sequestration in soils. Highlights: ► Comparison of decomposition rate

  1. Stabilization of carbon in composts and biochars in relation to carbon sequestration and soil fertility

    Energy Technology Data Exchange (ETDEWEB)

    Bolan, N.S., E-mail: Nanthi.Bolan@unisa.edu.au [Centre for Environmental Risk Assessment and Remediation (CERAR), University of South Australia, SA 5095 (Australia); Cooperative Research Centre for Contaminants Assessment and Remediation of the Environment (CRC CARE), University of South Australia, SA 5095 (Australia); Kunhikrishnan, A. [Chemical Safety Division, Department of Agro-Food Safety, National Academy of Agricultural Science, Suwon-si, Gyeonggi-do 441-707 (Korea, Republic of); Choppala, G.K.; Thangarajan, R. [Centre for Environmental Risk Assessment and Remediation (CERAR), University of South Australia, SA 5095 (Australia); Cooperative Research Centre for Contaminants Assessment and Remediation of the Environment (CRC CARE), University of South Australia, SA 5095 (Australia); Chung, J.W. [Department of Environmental Engineering, Gyeongnam National University of Science and Technology, Dongjin-ro 33, Jinju, Gyeongnam, 660-758 (Korea, Republic of)

    2012-05-01

    There have been increasing interests in the conversion of organic residues into biochars in order to reduce the rate of decomposition, thereby enhancing carbon (C) sequestration in soils. However energy is required to initiate the pyrolysis process during biochar production which can also lead to the release of greenhouse gasses. Alternative methods can be used to stabilize C in composts and other organic residues without impacting their quality. The objectives of this study include: (i) to compare the rate of decomposition among various organic amendments and (ii) to examine the effect of clay materials on the stabilization of C in organic amendments. The decomposition of a number of organic amendments (composts and biochars) was examined by monitoring the release of carbon-dioxide using respiration experiments. The results indicated that the rate of decomposition as measured by half life (t{sub 1/2}) varied between the organic amendments and was higher in sandy soil than in clay soil. The half life value ranged from 139 days in the sandy soil and 187 days in the clay soil for poultry manure compost to 9989 days for green waste biochar. Addition of clay materials to compost decreased the rate of decomposition, thereby increasing the stabilization of C. The half life value for poultry manure compost increased from 139 days to 620, 806 and 474 days with the addition of goethite, gibbsite and allophane, respectively. The increase in the stabilization of C with the addition of clay materials may be attributed to the immobilization of C, thereby preventing it from microbial decomposition. Stabilization of C in compost using clay materials did not impact negatively the value of composts in improving soil quality as measured by potentially mineralizable nitrogen and microbial biomass carbon in soil. - Graphical abstract: Stabilization of compost using clay materials (e.g. allophane) enhances carbon sequestration in soils. Highlights: Black

  2. Carbon sequestration.

    Science.gov (United States)

    Lal, Rattan

    2008-02-27

    Developing technologies to reduce the rate of increase of atmospheric concentration of carbon dioxide (CO2) from annual emissions of 8.6PgCyr-1 from energy, process industry, land-use conversion and soil cultivation is an important issue of the twenty-first century. Of the three options of reducing the global energy use, developing low or no-carbon fuel and sequestering emissions, this manuscript describes processes for carbon (CO2) sequestration and discusses abiotic and biotic technologies. Carbon sequestration implies transfer of atmospheric CO2 into other long-lived global pools including oceanic, pedologic, biotic and geological strata to reduce the net rate of increase in atmospheric CO2. Engineering techniques of CO2 injection in deep ocean, geological strata, old coal mines and oil wells, and saline aquifers along with mineral carbonation of CO2 constitute abiotic techniques. These techniques have a large potential of thousands of Pg, are expensive, have leakage risks and may be available for routine use by 2025 and beyond. In comparison, biotic techniques are natural and cost-effective processes, have numerous ancillary benefits, are immediately applicable but have finite sink capacity. Biotic and abiotic C sequestration options have specific nitches, are complementary, and have potential to mitigate the climate change risks.

  3. Stabilization of carbon in composts and biochars in relation to carbon sequestration and soil fertility.

    Science.gov (United States)

    Bolan, N S; Kunhikrishnan, A; Choppala, G K; Thangarajan, R; Chung, J W

    2012-05-01

    There have been increasing interests in the conversion of organic residues into biochars in order to reduce the rate of decomposition, thereby enhancing carbon (C) sequestration in soils. However energy is required to initiate the pyrolysis process during biochar production which can also lead to the release of greenhouse gasses. Alternative methods can be used to stabilize C in composts and other organic residues without impacting their quality. The objectives of this study include: (i) to compare the rate of decomposition among various organic amendments and (ii) to examine the effect of clay materials on the stabilization of C in organic amendments. The decomposition of a number of organic amendments (composts and biochars) was examined by monitoring the release of carbon-dioxide using respiration experiments. The results indicated that the rate of decomposition as measured by half life (t(1/2)) varied between the organic amendments and was higher in sandy soil than in clay soil. The half life value ranged from 139 days in the sandy soil and 187 days in the clay soil for poultry manure compost to 9989 days for green waste biochar. Addition of clay materials to compost decreased the rate of decomposition, thereby increasing the stabilization of C. The half life value for poultry manure compost increased from 139 days to 620, 806 and 474 days with the addition of goethite, gibbsite and allophane, respectively. The increase in the stabilization of C with the addition of clay materials may be attributed to the immobilization of C, thereby preventing it from microbial decomposition. Stabilization of C in compost using clay materials did not impact negatively the value of composts in improving soil quality as measured by potentially mineralizable nitrogen and microbial biomass carbon in soil. Copyright © 2012 Elsevier B.V. All rights reserved.

  4. A Comprehensive Classification and Evolutionary Analysis of Plant Homeobox Genes

    OpenAIRE

    Mukherjee, Krishanu; Brocchieri, Luciano; B?rglin, Thomas R.

    2009-01-01

    The full complement of homeobox transcription factor sequences, including genes and pseudogenes, was determined from the analysis of 10 complete genomes from flowering plants, moss, Selaginella, unicellular green algae, and red algae. Our exhaustive genome-wide searches resulted in the discovery in each class of a greater number of homeobox genes than previously reported. All homeobox genes can be unambiguously classified by sequence evolutionary analysis into 14 distinct classes also charact...

  5. The Aspergillus flavus Homeobox Gene, hbx1, Is Required for Development and Aflatoxin Production

    Directory of Open Access Journals (Sweden)

    Jeffrey W. Cary

    2017-10-01

    Full Text Available Homeobox proteins, a class of well conserved transcription factors, regulate the expression of targeted genes, especially those involved in development. In filamentous fungi, homeobox genes are required for normal conidiogenesis and fruiting body formation. In the present study, we identified eight homeobox (hbx genes in the aflatoxin-producing ascomycete, Aspergillus flavus, and determined their respective role in growth, conidiation and sclerotial production. Disruption of seven of the eight genes had little to no effect on fungal growth and development. However, disruption of the homeobox gene AFLA_069100, designated as hbx1, in two morphologically different A. flavus strains, CA14 and AF70, resulted in complete loss of production of conidia and sclerotia as well as aflatoxins B1 and B2, cyclopiazonic acid and aflatrem. Microscopic examination showed that the Δhbx1 mutants did not produce conidiophores. The inability of Δhbx1 mutants to produce conidia was related to downregulation of brlA (bristle and abaA (abacus, regulatory genes for conidiophore development. These mutants also had significant downregulation of the aflatoxin pathway biosynthetic genes aflC, aflD, aflM and the cluster-specific regulatory gene, aflR. Our results demonstrate that hbx1 not only plays a significant role in controlling A. flavus development but is also critical for the production of secondary metabolites, such as aflatoxins.

  6. Soil sterilization affects aging-related sequestration and bioavailability of p,p'-DDE and anthracene to earthworms

    International Nuclear Information System (INIS)

    Slizovskiy, Ilya B.; Kelsey, Jason W.

    2010-01-01

    Laboratory experiments investigated the effects of soil sterilization and compound aging on the bioaccumulation of spiked p,p'-DDE and anthracene by Eisenia fetida and Lumbricus terrestris. Declines in bioavailability occurred as pollutant residence time in both sterile and non-sterile soils increased from 3 to 203 d. Accumulation was generally higher in sterile soils during initial periods of aging (from 3-103 d). By 203 d, however, bioavailability of the compounds was unaffected by sterilization. Gamma irradiation and autoclaving may have altered bioavailability by inducing changes in the chemistry of soil organic matter (SOM). The results support a dual-mode partitioning sorption model in which the SOM components associated with short-term sorption (the 'soft' or 'rubbery' phases) are more affected than are the components associated with long-term sorption (the 'glassy' or microcrystalline phases). Risk assessments based on data from experiments in which sterile soil was used could overestimate exposure and bioaccumulation of pollutants. - Soil sterilization affects aging-related sequestration of organic contaminants.

  7. Soil sterilization affects aging-related sequestration and bioavailability of p,p'-DDE and anthracene to earthworms

    Energy Technology Data Exchange (ETDEWEB)

    Slizovskiy, Ilya B. [Program in Environmental Science and Department of Chemistry, Muhlenberg College, Allentown, PA 18104 (United States); Kelsey, Jason W., E-mail: Kelsey@muhlenberg.ed [Program in Environmental Science and Department of Chemistry, Muhlenberg College, Allentown, PA 18104 (United States)

    2010-10-15

    Laboratory experiments investigated the effects of soil sterilization and compound aging on the bioaccumulation of spiked p,p'-DDE and anthracene by Eisenia fetida and Lumbricus terrestris. Declines in bioavailability occurred as pollutant residence time in both sterile and non-sterile soils increased from 3 to 203 d. Accumulation was generally higher in sterile soils during initial periods of aging (from 3-103 d). By 203 d, however, bioavailability of the compounds was unaffected by sterilization. Gamma irradiation and autoclaving may have altered bioavailability by inducing changes in the chemistry of soil organic matter (SOM). The results support a dual-mode partitioning sorption model in which the SOM components associated with short-term sorption (the 'soft' or 'rubbery' phases) are more affected than are the components associated with long-term sorption (the 'glassy' or microcrystalline phases). Risk assessments based on data from experiments in which sterile soil was used could overestimate exposure and bioaccumulation of pollutants. - Soil sterilization affects aging-related sequestration of organic contaminants.

  8. Classification and expression analyses of homeobox genes from ...

    Indian Academy of Sciences (India)

    We present here the first genome-wide classification and comparative genomic analysis of the 14 homeobox genes present in D. discoideum. Based on the structural alignment of the homeodomains, they can be broadly divided into TALE and non-TALE classes. When individual homeobox genes were compared with ...

  9. Deoxyribonucleic-binding homeobox proteins are augmented in human cancer

    DEFF Research Database (Denmark)

    Wewer, U M; Mercurio, A M; Chung, S Y

    1990-01-01

    Homeobox genes encode sequence-specific DNA-binding proteins that are involved in the regulation of gene expression during embryonic development. In this study, we examined the expression of homeobox proteins in human cancer. Antiserum was obtained against a synthetic peptide derived from...... was then isolated and used to elicit a rabbit antiserum. In immunostaining, both antisera reacted with the nuclei of cultured tumor cells. In tissue sections of human carcinoma, nuclear immunoreactivity was observed in the tumor cells in 40 of 42 cases examined. Adjacent normal epithelial tissue obtained from......, the presence of the homeobox transcript in human carcinoma was documented by in situ hybridization and RNase protection mapping. These results demonstrate that human cancer is associated with the expression of homeobox proteins. Such homeobox proteins, as well as other regulatory proteins, could be involved...

  10. Residue and soil carbon sequestration in relation to crop yield as affected by irrigation, tillage, cropping system and nitrogen fertilization

    Science.gov (United States)

    Information on management practices is needed to increase surface residue and soil C sequestration to obtain farm C credit. The effects of irrigation, tillage, cropping system, and N fertilization were evaluated on the amount of crop biomass (stems and leaves) returned to the soil, surface residue C...

  11. Increasing cyclic electron flow is related to Na+ sequestration into vacuoles for salt tolerance in soybean.

    Science.gov (United States)

    He, Yi; Fu, Junliang; Yu, Chenliang; Wang, Xiaoman; Jiang, Qinsu; Hong, Jian; Lu, Kaixing; Xue, Gangping; Yan, Chengqi; James, Andrew; Xu, Ligen; Chen, Jianping; Jiang, Dean

    2015-11-01

    In land plants, the NAD(P)H dehydrogenase (NDH) complex reduces plastoquinones and drives cyclic electron flow (CEF) around PSI. It also produces extra ATP for photosynthesis and improves plant fitness under conditions of abiotic environmental stress. To elucidate the role of CEF in salt tolerance of the photosynthetic apparatus, Na(+) concentration, chlorophyll fluorescence, and expression of NDH B and H subunits, as well as of genes related to cellular and vacuolar Na(+) transport, were monitored. The salt-tolerant Glycine max (soybean) variety S111-9 exhibited much higher CEF activity and ATP accumulation in light than did the salt-sensitive variety Melrose, but similar leaf Na(+) concentrations under salt stress. In S111-9 plants, ndhB and ndhH were highly up-regulated under salt stress and their corresponding proteins were maintained at high levels or increased significantly. Under salt stress, S111-9 plants accumulated Na(+) in the vacuole, but Melrose plants accumulated Na(+) in the chloroplast. Compared with Melrose, S111-9 plants also showed higher expression of some genes associated with Na(+) transport into the vacuole and/or cell, such as genes encoding components of the CBL10 (calcineurin B-like protein 10)-CIPK24 (CBL-interacting protein kinase 24)-NHX (Na(+)/H(+) antiporter) and CBL4 (calcineurin B-like protein 4)-CIPK24-SOS1 (salt overly sensitive 1) complexes. Based on the findings, it is proposed that enhanced NDH-dependent CEF supplies extra ATP used to sequester Na(+) in the vacuole. This reveals an important mechanism for salt tolerance in soybean and provides new insights into plant resistance to salt stress. © The Author 2015. Published by Oxford University Press on behalf of the Society for Experimental Biology.

  12. Effect of Flow Direction on Relative Permeability Curves in Water/Gas Reservoir System: Implications in Geological CO2 Sequestration

    Directory of Open Access Journals (Sweden)

    Abdulrauf Rasheed Adebayo

    2017-01-01

    Full Text Available The effect of gravity on vertical flow and fluids saturation, especially when flow is against gravity, is not often a subject of interest to researchers. This is because of the notion that flow in subsurface formations is usually in horizontal direction and that vertical flow is impossible or marginal because of the impermeable shales or silts overlying them. The density difference between two fluids (usually oil and water flowing in the porous media is also normally negligible; hence gravity influence is neglected. Capillarity is also often avoided in relative permeability measurements in order to satisfy some flow equations. These notions have guided most laboratory core flooding experiments to be conducted in horizontal flow orientation, and the data obtained are as good as what the experiments tend to mimic. However, gravity effect plays a major role in gas liquid systems such as CO2 sequestration and some types of enhanced oil recovery techniques, particularly those involving gases, where large density difference exists between the fluid pair. In such cases, laboratory experiments conducted to derive relative permeability curves should take into consideration gravity effects and capillarity. Previous studies attribute directional dependence of relative permeability and residual saturations to rock anisotropy. It is shown in this study that rock permeability, residual saturation, and relative permeability depend on the interplay between gravity, capillarity, and viscous forces and also the direction of fluid flow even when the rock is isotropic. Rock samples representing different lithology and wide range of permeabilities were investigated through unsteady-state experiments covering drainage and imbibition in both vertical and horizontal flow directions. The experiments were performed at very low flow rates to capture capillarity. The results obtained showed that, for each homogeneous rock and for the same flow path along the core length

  13. CO2 sequestration

    International Nuclear Information System (INIS)

    Favre, E.; Jammes, L.; Guyot, F.; Prinzhofer, A.; Le Thiez, P.

    2009-01-01

    This document presents the summary of a conference-debate held at the Academie des Sciences (Paris, France) on the topic of CO 2 sequestration. Five papers are reviewed: problems and solutions for the CO 2 sequestration; observation and surveillance of reservoirs; genesis of carbonates and geological storage of CO 2 ; CO 2 sequestration in volcanic and ultra-basic rocks; CO 2 sequestration, transport and geological storage: scientific and economical perspectives

  14. Dlx homeobox gene family expression in osteoclasts.

    Science.gov (United States)

    Lézot, F; Thomas, B L; Blin-Wakkach, C; Castaneda, B; Bolanos, A; Hotton, D; Sharpe, P T; Heymann, D; Carles, G F; Grigoriadis, A E; Berdal, A

    2010-06-01

    Skeletal growth and homeostasis require the finely orchestrated secretion of mineralized tissue matrices by highly specialized cells, balanced with their degradation by osteoclasts. Time- and site-specific expression of Dlx and Msx homeobox genes in the cells secreting these matrices have been identified as important elements in the regulation of skeletal morphology. Such specific expression patterns have also been reported in osteoclasts for Msx genes. The aim of the present study was to establish the expression patterns of Dlx genes in osteoclasts and identify their function in regulating skeletal morphology. The expression patterns of all Dlx genes were examined during the whole osteoclastogenesis using different in vitro models. The results revealed that Dlx1 and Dlx2 are the only Dlx family members with a possible function in osteoclastogenesis as well as in mature osteoclasts. Dlx5 and Dlx6 were detected in the cultures but appear to be markers of monocytes and their derivatives. In vivo, Dlx2 expression in osteoclasts was examined using a Dlx2/LacZ transgenic mouse. Dlx2 is expressed in a subpopulation of osteoclasts in association with tooth, brain, nerve, and bone marrow volumetric growths. Altogether the present data suggest a role for Dlx2 in regulation of skeletal morphogenesis via functions within osteoclasts. (c) 2010 Wiley-Liss, Inc.

  15. Timing the Generation of Distinct Retinal Cells by Homeobox Proteins

    Science.gov (United States)

    Decembrini, Sarah; Andreazzoli, Massimiliano; Vignali, Robert; Barsacchi, Giuseppina; Cremisi, Federico

    2006-01-01

    The reason why different types of vertebrate nerve cells are generated in a particular sequence is still poorly understood. In the vertebrate retina, homeobox genes play a crucial role in establishing different cell identities. Here we provide evidence of a cellular clock that sequentially activates distinct homeobox genes in embryonic retinal cells, linking the identity of a retinal cell to its time of generation. By in situ expression analysis, we found that the three Xenopus homeobox genes Xotx5b, Xvsx1, and Xotx2 are initially transcribed but not translated in early retinal progenitors. Their translation requires cell cycle progression and is sequentially activated in photoreceptors (Xotx5b) and bipolar cells (Xvsx1 and Xotx2). Furthermore, by in vivo lipofection of “sensors” in which green fluorescent protein translation is under control of the 3′ untranslated region (UTR), we found that the 3′ UTRs of Xotx5b, Xvsx1, and Xotx2 are sufficient to drive a spatiotemporal pattern of translation matching that of the corresponding proteins and consistent with the time of generation of photoreceptors (Xotx5b) and bipolar cells (Xvsx1 and Xotx2). The block of cell cycle progression of single early retinal progenitors impairs their differentiation as photoreceptors and bipolar cells, but is rescued by the lipofection of Xotx5b and Xvsx1 coding sequences, respectively. This is the first evidence to our knowledge that vertebrate homeobox proteins can work as effectors of a cellular clock to establish distinct cell identities. PMID:16903786

  16. Timing the generation of distinct retinal cells by homeobox proteins.

    Directory of Open Access Journals (Sweden)

    Sarah Decembrini

    2006-09-01

    Full Text Available The reason why different types of vertebrate nerve cells are generated in a particular sequence is still poorly understood. In the vertebrate retina, homeobox genes play a crucial role in establishing different cell identities. Here we provide evidence of a cellular clock that sequentially activates distinct homeobox genes in embryonic retinal cells, linking the identity of a retinal cell to its time of generation. By in situ expression analysis, we found that the three Xenopus homeobox genes Xotx5b, Xvsx1, and Xotx2 are initially transcribed but not translated in early retinal progenitors. Their translation requires cell cycle progression and is sequentially activated in photoreceptors (Xotx5b and bipolar cells (Xvsx1 and Xotx2. Furthermore, by in vivo lipofection of "sensors" in which green fluorescent protein translation is under control of the 3' untranslated region (UTR, we found that the 3' UTRs of Xotx5b, Xvsx1, and Xotx2 are sufficient to drive a spatiotemporal pattern of translation matching that of the corresponding proteins and consistent with the time of generation of photoreceptors (Xotx5b and bipolar cells (Xvsx1 and Xotx2. The block of cell cycle progression of single early retinal progenitors impairs their differentiation as photoreceptors and bipolar cells, but is rescued by the lipofection of Xotx5b and Xvsx1 coding sequences, respectively. This is the first evidence to our knowledge that vertebrate homeobox proteins can work as effectors of a cellular clock to establish distinct cell identities.

  17. CO2 Sequestration short course

    Energy Technology Data Exchange (ETDEWEB)

    DePaolo, Donald J. [Lawrence Berkeley National Laboratory; Cole, David R [The Ohio State University; Navrotsky, Alexandra [University of California-Davis; Bourg, Ian C [Lawrence Berkeley National Laboratory

    2014-12-08

    Given the public’s interest and concern over the impact of atmospheric greenhouse gases (GHGs) on global warming and related climate change patterns, the course is a timely discussion of the underlying geochemical and mineralogical processes associated with gas-water-mineral-interactions encountered during geological sequestration of CO2. The geochemical and mineralogical processes encountered in the subsurface during storage of CO2 will play an important role in facilitating the isolation of anthropogenic CO2 in the subsurface for thousands of years, thus moderating rapid increases in concentrations of atmospheric CO2 and mitigating global warming. Successful implementation of a variety of geological sequestration scenarios will be dependent on our ability to accurately predict, monitor and verify the behavior of CO2 in the subsurface. The course was proposed to and accepted by the Mineralogical Society of America (MSA) and The Geochemical Society (GS).

  18. Homeobox transcription factor muscle segment homeobox 2 (Msx2) correlates with good prognosis in breast cancer patients and induces apoptosis in vitro.

    LENUS (Irish Health Repository)

    Lanigan, Fiona

    2010-01-01

    The homeobox-containing transcription factor muscle segment homeobox 2 (Msx2) plays an important role in mammary gland development. However, the clinical implications of Msx2 expression in breast cancer are unclear. The aims of this study were to investigate the potential clinical value of Msx2 as a breast cancer biomarker and to clarify its functional role in vitro.

  19. RANGELAND SEQUESTRATION POTENTIAL ASSESSMENT

    Energy Technology Data Exchange (ETDEWEB)

    Lee Spangler; George F. Vance; Gerald E. Schuman; Justin D. Derner

    2012-03-31

    Rangelands occupy approximately half of the world's land area and store greater than 10% of the terrestrial biomass carbon and up to 30% of the global soil organic carbon. Although soil carbon sequestration rates are generally low on rangelands in comparison to croplands, increases in terrestrial carbon in rangelands resulting from management can account for significant carbon sequestration given the magnitude of this land resource. Despite the significance rangelands can play in carbon sequestration, our understanding remains limited. Researchers conducted a literature review to identify sustainably management practices that conserve existing rangeland carbon pools, as well as increase or restore carbon sequestration potentials for this type of ecosystem. The research team also reviewed the impact of grazing management on rangeland carbon dynamics, which are not well understood due to heterogeneity in grassland types. The literature review on the impact of grazing showed a wide variation of results, ranging from positive to negative to no response. On further review, the intensity of grazing appears to be a major factor in controlling rangeland soil organic carbon dynamics. In 2003, researchers conducted field sampling to assess the effect of several drought years during the period 1993-2002. Results suggested that drought can significantly impact rangeland soil organic carbon (SOC) levels, and therefore, carbon sequestration. Resampling was conducted in 2006; results again suggested that climatic conditions may have overridden management effects on SOC due to the ecological lag of the severe drought of 2002. Analysis of grazing practices during this research effort suggested that there are beneficial effects of light grazing compared to heavy grazing and non-grazing with respect to increased SOC and nitrogen contents. In general, carbon storage in rangelands also increases with increased precipitation, although researchers identified threshold levels of

  20. Chicken homeobox gene Msx-1: structure, expression in limb buds and effect of retinoic acid.

    Science.gov (United States)

    Yokouchi, Y; Ohsugi, K; Sasaki, H; Kuroiwa, A

    1991-10-01

    A chicken gene carrying a homeobox highly homologous to the Drosophila muscle segment homeobox (msh) gene was isolated and designated as Msx-1. Conceptual translation from the longest ORF gave a protein of 259 amino acids lacking the conserved hexapeptide. Northern analysis detected a single 2.6 kb transcript. As early as day 2 of incubation, the transcript was detected but was not found in adult tissue. In situ hybridization analysis revealed that Msx-1 expression is closely related to a particular mesenchymal cell lineage during limb bud formation. In early stage embryos, Msx-1 was expressed in the somatopleure. When primordial mesenchyme cells for limb bud were generated from the Wolffian ridge of the somatopleure, Msx-1 expression began to diminish in the posterior half of the limb bud then in the presumptive cartilage-forming mesenchyme. In developing limb buds, remarkable expression was seen in the apical ectodermal ridge (AER), which is responsible for the sustained outgrowth and development of the limb. The Msx-1 transcripts were found in the limb mesenchymal cells in the region covering the necrotic zone and ectodermal cells overlying such mesenchymal cells. Both ectodermal and mesenchymal expression in limb bud were rapidly suppressed by local treatment of retinoic acid which can generate mirror-image duplication of digits. This indicates that retinoic acid alters the marginal presumptive non-cartilage forming mesenchyme cell lineage through suppression of Msx-1 expression.

  1. The homeobox BcHOX8 gene in Botrytis cinerea regulates vegetative growth and morphology.

    Directory of Open Access Journals (Sweden)

    Zsuzsanna Antal

    Full Text Available Filamentous growth and the capacity at producing conidia are two critical aspects of most fungal life cycles, including that of many plant or animal pathogens. Here, we report on the identification of a homeobox transcription factor encoding gene that plays a role in these two particular aspects of the development of the phytopathogenic fungus Botrytis cinerea. Deletion of the BcHOX8 gene in both the B. cinerea B05-10 and T4 strains causes similar phenotypes, among which a curved, arabesque-like, hyphal growth on hydrophobic surfaces; the mutants were hence named Arabesque. Expression of the BcHOX8 gene is higher in conidia and infection cushions than in developing appressorium or mycelium. In the Arabesque mutants, colony growth rate is reduced and abnormal infection cushions are produced. Asexual reproduction is also affected with abnormal conidiophore being formed, strongly reduced conidia production and dramatic changes in conidial morphology. Finally, the mutation affects the fungus ability to efficiently colonize different host plants. Analysis of the B. cinerea genome shows that BcHOX8 is one member of a nine putative homeobox genes family. Available gene expression data suggest that these genes are functional and sequence comparisons indicate that two of them would be specific to B. cinerea and its close relative Sclerotinia sclerotiorum.

  2. Big Sky Carbon Sequestration Partnership

    Energy Technology Data Exchange (ETDEWEB)

    Susan Capalbo

    2005-12-31

    has significant potential to sequester large amounts of CO{sub 2}. Simulations conducted to evaluate mineral trapping potential of mafic volcanic rock formations located in the Idaho province suggest that supercritical CO{sub 2} is converted to solid carbonate mineral within a few hundred years and permanently entombs the carbon. Although MMV for this rock type may be challenging, a carefully chosen combination of geophysical and geochemical techniques should allow assessment of the fate of CO{sub 2} in deep basalt hosted aquifers. Terrestrial carbon sequestration relies on land management practices and technologies to remove atmospheric CO{sub 2} where it is stored in trees, plants, and soil. This indirect sequestration can be implemented today and is on the front line of voluntary, market-based approaches to reduce CO{sub 2} emissions. Initial estimates of terrestrial sinks indicate a vast potential for increasing and maintaining soil Carbon (C) on rangelands, and forested, agricultural, and reclaimed lands. Rangelands can store up to an additional 0.05 mt C/ha/yr, while the croplands are on average four times that amount. Estimates of technical potential for soil sequestration within the region in cropland are in the range of 2.0 M mt C/yr over 20 year time horizon. This is equivalent to approximately 7.0 M mt CO{sub 2}e/yr. The forestry sinks are well documented, and the potential in the Big Sky region ranges from 9-15 M mt CO{sub 2} equivalent per year. Value-added benefits include enhanced yields, reduced erosion, and increased wildlife habitat. Thus the terrestrial sinks provide a viable, environmentally beneficial, and relatively low cost sink that is available to sequester C in the current time frame. The Partnership recognizes the critical importance of measurement, monitoring, and verification technologies to support not only carbon trading but all policies and programs that DOE and other agencies may want to pursue in support of GHG mitigation. The efforts

  3. Relative permeabilities of supercritical CO2 and brine in carbon sequestration by a two-phase lattice Boltzmann method

    Science.gov (United States)

    Xie, Jian.-Fei.; He, S.; Zu, Y. Q.; Lamy-Chappuis, B.; Yardley, B. W. D.

    2017-08-01

    In this paper, the migration of supercritical carbon dioxide (CO2) in realistic sandstone rocks under conditions of saline aquifers, with applications to the carbon geological storage, has been investigated by a two-phase lattice Boltzmann method (LBM). Firstly the digital images of sandstone rocks were reproduced utilizing the X-ray computed microtomography (micro-CT), and high resolutions (up to 2.5 μm) were applied to the pore-scale LBM simulations. For the sake of numerical stability, the digital images were "cleaned" by closing the dead holes and removing the suspended particles in sandstone rocks. In addition, the effect of chemical reactions occurred in the carbonation process on the permeability was taken into account. For the wetting brine and non-wetting supercritical CO2 flows, they were treated as the immiscible fluids and were driven by pressure gradients in sandstone rocks. Relative permeabilities of brine and supercritical CO2 in sandstone rocks were estimated. Particularly the dynamic saturation was applied to improve the reliability of the calculations of the relative permeabilities. Moreover, the effects of the viscosity ratio of the two immiscible fluids and the resolution of digital images on the relative permeability were systematically investigated.

  4. Federal Control of Geological Carbon Sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Reitze, Arnold W. [Univ. of Utah, Salt Lake City, UT (United States)

    2011-04-01

    The United States has economically recoverable coal reserves of about 261 billion tons, which is in excess of a 250-­year supply based on 2009 consumption rates. However, in the near future the use of coal may be legally restricted because of concerns over the effects of its combustion on atmospheric carbon dioxide concentrations. In response, the U.S. Department of Energy is making significant efforts to help develop and implement a commercial scale program of geologic carbon sequestration that involves capturing and storing carbon dioxide emitted from coal-burning electric power plants in deep underground formations. This article explores the technical and legal problems that must be resolved in order to have a viable carbon sequestration program. It covers the responsibilities of the United States Environmental Protection Agency and the Departments of Energy, Transportation and Interior. It discusses the use of the Safe Drinking Water Act, the Clean Air Act, the National Environmental Policy Act, the Endangered Species Act, and other applicable federal laws. Finally, it discusses the provisions related to carbon sequestration that have been included in the major bills dealing with climate change that Congress has been considering in 2009 and 2010. The article concludes that the many legal issues that exist can be resolved, but whether carbon sequestration becomes a commercial reality will depend on reducing its costs or by imposing legal requirements on fossil-fired power plants that result in the costs of carbon emissions increasing to the point that carbon sequestration becomes a feasible option.

  5. Carbon sequestration in the agroecosystem

    Directory of Open Access Journals (Sweden)

    Tomáš Středa

    2008-01-01

    Full Text Available Reduction of amount CO2 is possible by carbon sequestration to the soil. Fixation potential of EU–15 agricultural land is c. 16–19 mil t C . year−1. Amount and composition of post–harvest residues is essential for carbon soil sequestration. Long–term yield series of the most planted crops (winter wheat – Triticum aestivum, spring barley – Hordeum vulgare, corn and silage maize – Zea mays, winter rape – Brassica napus, potatoes – Solanum tuberosum, sugar beet – Beta vulgaris, alfalfa – Medicago sativa, red clover – Trifolium pratense, white mustard – Sinapis alba and fiddleneck – Phacelia tanacetifolia in various agroecological conditions and growing technologies were used for carbon balance calculation. The carbon balances were calculated for main crop rotations of maize, sugar beet, cereal and potato production regions (24 crop rotations. The calculations were realized for following planting varieties: traditional, commercial, ecological and with higher rate of winter rape. All chosen crop rotations (except seven have positive carbon balance in the tillage system. Amount of fixed carbon might be increases about 30% by the use of no–tillage system. Least amount of carbon is fixed by potatoes, high amount by cereals, alfalfa and sugar beet. For a short time (months the crops sequestration of carbon is relatively high (to 4.4 t . ha−1 . year−1 or to 5.7 t . ha−1 . year−1 for no–tillage system. From the long time viewpoint (tens of years the data of humified carbon in arable soil (max 400 kg C . ha−1 . year−1 are important. Maximal carbon deficit of chosen crop rotation is 725 kg C . year−1.

  6. Capillary pressure - saturation relations for supercritical CO2 and brine: Implications for capillary/residual trapping in carbonate reservoirs during geologic carbon sequestration

    Science.gov (United States)

    Wang, S.; Tokunaga, T. K.

    2014-12-01

    In geologic carbon sequestration (GCS), data on capillary pressure (Pc) - saturation (Sw) relations are routinely needed to appraise reservoir processes. Capillarity and its hysteresis have been often experimentally studied in oil-water, gas-water and three phase gas-oil-water systems, but fewer works have been reported on scCO2-water under in-situ reservoir conditions. Here, Pc-Sw relations of supercritical (sc) CO2 displacing brine, and brine rewetting the porous medium to trap scCO2 were studied to understand CO2 transport and trapping behavior in carbonate reservoirs under representative reservoir conditions. High-quality drainage and imbibition (and associated capillary pressure hysteresis) curves were measured under elevated temperature and pressure (45 ºC, 8.5 and 12 MPa) for scCO2-brine as well as at room temperature and pressure (23 ºC, 0.1 MPa) for air-brine in unconsolidated limestone and dolomite sand columns using newly developed semi-automated multistep outflow-inflow porous plate apparatus. Drainage and imbibition curves for scCO2-brine deviated from the universal scaling curves for hydrophilic interactions (with greater deviation under higher pressure) and shifted to lower Pc than predicted based on interfacial tension (IFT) changes. Augmented scaling incorporating differences in IFT and contact angle improved the scaling results but the scaled curves still did not converge onto the universal curves. Equilibrium residual trapping of the nonwetting phase was determined at Pc =0 during imbibition. The capillary-trapped amounts of scCO2 were significantly larger than for air. It is concluded that the deviations from the universal capillary scaling curves are caused by scCO2-induced wettability alteration, given the fact that pore geometry remained constant and IFT is well constrained. In-situ wettability alteration by reactive scCO2 is of critical importance and must be accounted for to achieve reliable predictions of CO2 behavior in GCS reservoirs.

  7. Exclusion of pituitary homeobox 2 gene polymorphism in vertical mandibular asymmetry patients: a preliminary study

    Science.gov (United States)

    Sofyanti, Ervina; Boel, Trelia; Soegiharto, Benny; Ilyas, Syafruddin; Irani Nainggolan, Lidya; Auerkari, Elza Ibrahim

    2018-03-01

    Pituitary Homeobox 2 (PITX2), is an active gene as a paired-related homeobox gene that encodes multiple isoforms. Its Nodal pathway in determination of left-right patterning during embryogenesis has been reported in satellite cells and expressed in adult human skeletal muscle. PITX2A and PITX2B are produced by alternative splicing and used of different promoters. PITX2C uses an alternative promoter located upstream of exon 4. PITX2D is produced by PITX2C alternative promoter and differential splicing. The 5’-primers and 3’- antisense primer were unique for each isoforms. Variability measurement in vertical dimension showed stronger genetic component than sagittal. This study aims to obtain the genotype marker of vertical mandibular asymmetry related to PITX2A and PITX2D isoform by visualization of the amplified product on stained gel to allele specific oligonucleotide between the case and control with Restriction Fragment Length Polymorphism (RFLP). Determination of vertical mandibular asymmetry based on condylar height asymmetry index of pre-treatment panoramic radiograph using Kjellberg’s technique whilst vertical mandibular growth pattern using lateral cephalogram. The differences of condylar height asymmetry in case-control based on vertical growth pattern was compared using Pearson’s chi-squared test. DNA extraction of 129 out-coming orthodontic patients in Universitas Sumatera Utara Dental Hospital were obtained from Buccal swab. Then DNA samples were amplified by Polymerase chain reaction (PCR) and digested with NciI restriction enzyme prior to electrophoresis visualization. There was no significant statistical difference in vertical mandibular asymmetry compared to vertical mandibular growth pattern. The RFLP analysis did not show any polymorphism for PITX2A and PITX2D isoform. All of the samples showed wild type homozygote. Further analysis method, except RFLP, were required to understand the genetic factor in the variance of vertical mandibular

  8. BIG SKY CARBON SEQUESTRATION PARTNERSHIP

    Energy Technology Data Exchange (ETDEWEB)

    Susan M. Capalbo

    2004-10-31

    include Wyoming in much of the GIS data sets, analysis, and related materials. The deliverables are discussed in the following sections and greater details are provided in the materials that are attached to this report. In August 2004, a presentation was made to Pioneer Hi-Bred, discussing the Partnership and the synergies with terrestrial sequestration, agricultural industries, and ongoing, complimentary USDA efforts. The Partnership organized a Carbon session at the INRA 2004 Environmental and Subsurface Science Symposium in September 2004; also in September, a presentation was made to the Wyoming Carbon Sequestration Advisory Committee, followed up with a roundtable discussion.

  9. Restingomyces, a new sequestrate genus from the Brazilian Atlantic rainforest that is phylogenetically related to early-diverging taxa in Trappeaceae (Phallales).

    Science.gov (United States)

    Sulzbacher, Marcelo A; Grebenc, Tine; Cabral, Tiara S; Giachini, Admir J; Goto, Bruno T; Smith, Matthew E; Baseia, Iuri G

    2016-09-01

    Restingomyces reticulatus gen. et sp. nov. is a recently discovered false truffle species from Atlantic "restinga" rainforest in northeastern Brazil. Molecular and morphological characters separate this new sequestrate species from other described taxa in the order Phallales (Phallomycetidae, Basidiomycota). In our phylogenetic analysis based on nuc 28S rDNA and atp6, R. reticulatus forms a sister clade to Trappea darkeri and Phallobata alba, with the three taxa forming the earliest diverging lineage within Phallales. Morphological and molecular data warrant the recognition of the new genus and species, described here, and we also amend the taxonomic description for the family Trappeaceae. © 2016 by The Mycological Society of America.

  10. The role of reforestation in carbon sequestration

    Science.gov (United States)

    Nave, L. E.; Walters, B. F.; Hofmeister, K.; Perry, C. H.; Mishra, U.; Domke, G. M.; Swanston, C.

    2017-12-01

    In the United States (U.S.), the maintenance of forest cover is a legal mandate for federally managed forest lands. Reforestation is one option for maintaining forest cover on managed or disturbed lands, and as a land use change can increase forest cover on previously non-forested lands, enhancing carbon (C)-based ecosystem services and functions such as the production of woody biomass for forest products and the mitigation of atmospheric CO2 pollution and climate change. Nonetheless, multiple assessments indicate that reforestation in the U.S. lags behind its potential, with continued ecosystem services and functions at risk if reforestation is not increased. In this context, there is need for multiple independent analyses that quantify the role of reforestation in C sequestration. Here, we report the findings of a large-scale data synthesis aimed at four objectives: 1) estimate C storage in major pools in forest and other land cover types; 2) quantify sources of variation in C pools; 3) compare the impacts of reforestation and afforestation on C pools; 4) assess whether results hold or diverge across ecoregions. Our data-driven analysis provides four key inferences regarding reforestation and other land use impacts on C sequestration. First, soils are the dominant C pool under all land cover types in the U.S., and spatial variation in soil C pool sizes has less to do with land cover than with other factors. Second, where historically cultivated lands are being reforested, topsoils are sequestering significant amounts of C, with the majority of reforested lands yet to reach sequestration capacity (relative to forested baseline). Third, the establishment of woody vegetation delivers immediate to multi-decadal C sequestration benefits in biomass and coarse woody debris pools, with two- to three-fold C sequestration benefits during the first several decades following planting. Fourth, opportunities to enhance C sequestration through reforestation vary among

  11. Establishment of canine hemangiosarcoma xenograft models expressing endothelial growth factors, their receptors, and angiogenesis-associated homeobox genes

    International Nuclear Information System (INIS)

    Kodama, Atsushi; Yanai, Tokuma; Sakai, Hiroki; Matsuura, Satoko; Murakami, Mami; Murai, Atsuko; Mori, Takashi; Maruo, Kouji; Kimura, Tohru; Masegi, Toshiaki

    2009-01-01

    Human hemangiosarcoma (HSA) tends to have a poor prognosis; its tumorigenesis has not been elucidated, as there is a dearth of HSA clinical specimens and no experimental model for HSA. However, the incidence of spontaneous HSA is relatively high in canines; therefore, canine HSA has been useful in the study of human HSA. Recently, the production of angiogenic growth factors and their receptors in human and canine HSA has been reported. Moreover, the growth-factor environment of HSA is very similar to that of pathophysiological angiogenesis, which some homeobox genes regulate in the transcription of angiogenic molecules. In the present study, we established 6 xenograft canine HSA tumors and detected the expression of growth factors, their receptors, and angiogenic homeobox genes. Six primary canine HSAs were xenografted to nude mice subcutaneously and serially transplanted. Subsequently, the expressions of vascular endothelial growth factor (VEGF)-A, basic fibroblast growth factors (bFGF), flt-1 and flk-1 (receptors of VEGF-A), FGFR-1, and angiogenic homeobox genes HoxA9, HoxB3, HoxB7, HoxD3, Pbx1, and Meis1 were investigated in original and xenograft tumors by histopathology, immunostaining, and reverse transcription polymerase chain reaction (RT-PCR), using canine-specific primer sets. Histopathologically, xenograft tumors comprised a proliferation of neoplastic cells that were varied in shape, from spindle-shaped and polygonal to ovoid; some vascular-like structures and vascular clefts of channels were observed, similar to those in the original tumors. The expression of endothelial markers (CD31 and vWF) was detected in xenograft tumors by immunohistochemistry and RT-PCR. Moreover, the expression of VEGF-A, bFGF, flt-1, flk-1, FGFR-1, HoxA9, HoxB3, HoxB7, HoxD3, Pbx1, and Meis1 was detected in xenograft tumors. Interestingly, expressions of bFGF tended to be higher in 3 of the xenograft HSA tumors than in the other tumors. We established 6 xenograft canine HSA

  12. Exploration of public acceptance regarding CO2 underground sequestration technologies

    International Nuclear Information System (INIS)

    Uno, M.; Tokushige, K.; Mori, Y.; Furukawa, A.

    2005-01-01

    Mechanisms for gaining public acceptance of carbon dioxide (CO 2 ) aquifer sequestration were investigated through the use of questionnaires and focus group interviews. The study was performed as part of a CO 2 sequestration technology promotion project in Japan. The questionnaire portion of the study was conducted to determine public opinions and the extent of public awareness of CO 2 sequestration technologies. Questionnaires were distributed to undergraduate students majoring in environmental sociology. Participants were provided with newspaper articles related to CO 2 sequestration. The focus group study was conducted to obtain qualitative results to complement findings from the questionnaire survey. Results of the survey suggested that many participants were not particularly concerned about global warming, and had almost no knowledge about CO 2 sequestration. The opinions of some students were influenced by an awareness of similar types of facilities located near their homes. Attitudes were also influenced by the newspaper articles provided during the focus group sessions. However, many older participants did not trust information presented to them in newspaper format. Results suggested that many people identified afforestation as an alternative technology to CO 2 sequestration, and tended to think of CO 2 in negative terms as it contributed to global warming. Some participants assumed that CO 2 was harmful. The majority of respondents agreed with the development of CO 2 sequestration technologies as part of a program of alternative emissions abatement technologies. The provision of detailed information concerning CO 2 sequestration did not completely remove anxieties concerning the technology's potential negative impacts. It was concluded that a confident communications strategy is needed to persuade Japanese residents of the need to implement CO 2 sequestration technologies. 11 refs., 2 figs

  13. Carbon sequestration leadership forum

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2003-07-01

    The Carbon Sequestration Leadership Forum (CSLF) is an international climate change initiative that will focus on development of carbon capture and storage technologies as a means of accomplishing long-term stabilisation of greenhouse gas levels in the atmosphere. This initiative is designed to improve these technologies through coordinated research and development with international partners and private industry. Three types of cooperation are currently envisioned within the framework of the Forum: data gathering, information exchange, and joint projects. Data gathered from participating countries will be aggregated, summarised, and distributed to all of the Forum's participants. Joint projects will be identified by member nations with the Forum serving as a mechanism for bringing together government and private sector representatives from member countries. The article also reports the inaugural meeting which was held 23-25 June 2003 in Washington.

  14. Bile acid sequestrants

    DEFF Research Database (Denmark)

    Hansen, Morten; Sonne, David P; Knop, Filip K

    2014-01-01

    Bile acids are synthesized in the liver from cholesterol and have traditionally been recognized for their role in absorption of lipids and in cholesterol homeostasis. In recent years, however, bile acids have emerged as metabolic signaling molecules that are involved in the regulation of lipid...... and glucose metabolism, and possibly energy homeostasis, through activation of the bile acid receptors farnesoid X receptor (FXR) and TGR5. Bile acid sequestrants (BASs) constitute a class of drugs that bind bile acids in the intestine to form a nonabsorbable complex resulting in interruption...... of the enterohepatic circulation. This increases bile acid synthesis and consequently reduces serum low-density lipoprotein cholesterol. Also, BASs improve glycemic control in patients with type 2 diabetes. Despite a growing understanding of the impact of BASs on glucose metabolism, the mechanisms behind their glucose...

  15. Proper development of relay somatic sensory neurons and D2/D4 interneurons requires homeobox genes Rnx/Tlx-3 and Tlx-1.

    Science.gov (United States)

    Qian, Ying; Shirasawa, Senji; Chen, Chih-Li; Cheng, Leping; Ma, Qiufu

    2002-05-15

    Trigeminal nuclei and the dorsal spinal cord are first-order relay stations for processing somatic sensory information such as touch, pain, and temperature. The origins and development of these neurons are poorly understood. Here we show that relay somatic sensory neurons and D2/D4 dorsal interneurons likely derive from Mash1-positive neural precursors, and depend on two related homeobox genes, Rnx and Tlx-1, for proper formation. Rnx and Tlx-1 maintain expression of Drg11, a homeobox gene critical for the development of pain circuitry, and are essential for the ingrowth of trkA+ nociceptive/thermoceptive sensory afferents to their central targets. We showed previously that Rnx is necessary for proper formation of the nucleus of solitary tract, the target for visceral sensory afferents. Together, our studies demonstrate a central role for Rnx and Tlx-1 in the development of two major classes of relay sensory neurons, somatic and visceral.

  16. Early evolution of the LIM homeobox gene family

    Energy Technology Data Exchange (ETDEWEB)

    Srivastava, Mansi; Larroux, Claire; Lu, Daniel R; Mohanty, Kareshma; Chapman, Jarrod; Degnan, Bernard M; Rokhsar, Daniel S

    2010-01-01

    LIM homeobox (Lhx) transcription factors are unique to the animal lineage and have patterning roles during embryonic development in flies, nematodes and vertebrates, with a conserved role in specifying neuronal identity. Though genes of this family have been reported in a sponge and a cnidarian, the expression patterns and functions of the Lhx family during development in non-bilaterian phyla are not known. We identified Lhx genes in two cnidarians and a placozoan and report the expression of Lhx genes during embryonic development in Nematostella and the demosponge Amphimedon. Members of the six major LIM homeobox subfamilies are represented in the genomes of the starlet sea anemone, Nematostella vectensis, and the placozoan Trichoplax adhaerens. The hydrozoan cnidarian, Hydra magnipapillata, has retained four of the six Lhx subfamilies, but apparently lost two others. Only three subfamilies are represented in the haplosclerid demosponge Amphimedon queenslandica. A tandem cluster of three Lhx genes of different subfamilies and a gene containing two LIM domains in the genome of T. adhaerens (an animal without any neurons) indicates that Lhx subfamilies were generated by tandem duplication. This tandem cluster in Trichoplax is likely a remnant of the original chromosomal context in which Lhx subfamilies first appeared. Three of the six Trichoplax Lhx genes are expressed in animals in laboratory culture, as are all Lhx genes in Hydra. Expression patterns of Nematostella Lhx genes correlate with neural territories in larval and juvenile polyp stages. In the aneural demosponge, A. queenslandica, the three Lhx genes are expressed widely during development, including in cells that are associated with the larval photosensory ring. The Lhx family expanded and diversified early in animal evolution, with all six subfamilies already diverged prior to the cnidarian-placozoan-bilaterian last common ancestor. In Nematostella, Lhx gene expression is correlated with neural

  17. Early evolution of the LIM homeobox gene family

    Directory of Open Access Journals (Sweden)

    Degnan Bernard M

    2010-01-01

    Full Text Available Abstract Background LIM homeobox (Lhx transcription factors are unique to the animal lineage and have patterning roles during embryonic development in flies, nematodes and vertebrates, with a conserved role in specifying neuronal identity. Though genes of this family have been reported in a sponge and a cnidarian, the expression patterns and functions of the Lhx family during development in non-bilaterian phyla are not known. Results We identified Lhx genes in two cnidarians and a placozoan and report the expression of Lhx genes during embryonic development in Nematostella and the demosponge Amphimedon. Members of the six major LIM homeobox subfamilies are represented in the genomes of the starlet sea anemone, Nematostella vectensis, and the placozoan Trichoplax adhaerens. The hydrozoan cnidarian, Hydra magnipapillata, has retained four of the six Lhx subfamilies, but apparently lost two others. Only three subfamilies are represented in the haplosclerid demosponge Amphimedon queenslandica. A tandem cluster of three Lhx genes of different subfamilies and a gene containing two LIM domains in the genome of T. adhaerens (an animal without any neurons indicates that Lhx subfamilies were generated by tandem duplication. This tandem cluster in Trichoplax is likely a remnant of the original chromosomal context in which Lhx subfamilies first appeared. Three of the six Trichoplax Lhx genes are expressed in animals in laboratory culture, as are all Lhx genes in Hydra. Expression patterns of Nematostella Lhx genes correlate with neural territories in larval and juvenile polyp stages. In the aneural demosponge, A. queenslandica, the three Lhx genes are expressed widely during development, including in cells that are associated with the larval photosensory ring. Conclusions The Lhx family expanded and diversified early in animal evolution, with all six subfamilies already diverged prior to the cnidarian-placozoan-bilaterian last common ancestor. In

  18. Carbon capture and sequestration (CCS)

    Science.gov (United States)

    2009-06-19

    Carbon capture and sequestration (or storage)known as CCShas attracted interest as a : measure for mitigating global climate change because large amounts of carbon dioxide (CO2) : emitted from fossil fuel use in the United States are potentiall...

  19. Bile acid sequestrants for cholesterol

    Science.gov (United States)

    ... ency/patientinstructions/000787.htm Bile acid sequestrants for cholesterol To use the sharing features on this page, ... are medicines that help lower your LDL (bad) cholesterol . Too much cholesterol in your blood can stick ...

  20. Response comment: Carbon sequestration on Mars

    Science.gov (United States)

    Edwards, Christopher; Ehlmann, Bethany L.

    2016-01-01

    Martian atmospheric pressure has important implications for the past and present habitability of the planet, including the timing and causes of environmental change. The ancient Martian surface is strewn with evidence for early water bound in minerals (e.g., Ehlmann and Edwards, 2014) and recorded in surface features such as large catastrophically created outflow channels (e.g., Carr, 1979), valley networks (Hynek et al., 2010; Irwin et al., 2005), and crater lakes (e.g., Fassett and Head, 2008). Using orbital spectral data sets coupled with geologic maps and a set of numerical spectral analysis models, Edwards and Ehlmann (2015) constrained the amount of atmospheric sequestration in early Martian rocks and found that the majority of this sequestration occurred prior to the formation of the early Hesperian/late Noachian valley networks (Fassett and Head, 2011; Hynek et al., 2010), thus implying the atmosphere was already thin by the time these surface-water-related features were formed.

  1. To Sequestrate or not to Sequestrate in View of the National Credit ...

    African Journals Online (AJOL)

    Keywords: Advantage of creditors; civil suit; compulsory sequestration; concursus creditorum; credit agreements; debt counsellor; debt enforcement; debt relief measures; debt restructuring; debt review; discretion of court; National Credit Act; NCA; reckless credit; Section 129 notice; sequestration; sequestration applications; ...

  2. Spatial variation in the storages and age-related dynamics of forest carbon sequestration in different climate zones-evidence from black locust plantations on the Loess Plateau of China.

    Science.gov (United States)

    Li, Taijun; Ren, Bowen; Wang, Dahui; Liu, Guobin

    2015-01-01

    Knowledge about the long-term influences of climate change on the amount of potential carbon (C) sequestration in forest ecosystems, including age-related dynamics, remains unclear. This study used two similar age-sequences of black locust forests (Robinia pseudoacacia L.) in the semi-arid and semi-humid zones of China's Loess Plateau to assess the variation in C stocks and age-related dynamics. Our results demonstrated that black locust forests of the semi-humid zone stored significantly more C than did forests in the semi-arid zone, across the chronosequence (p zone, while the semi-arid zone had a capacity of only 79.4 Mg C ha-1. Soil organic C (SOC) increased continuously with stand age in the semi-arid zone (R2 = 0.84, p = 0.010). However, in the semi-humid zone, SOC declined sharply by 47.8% after the initial stage (5 to 10 y). The C stock in trees increased continuously with stand age in the semi-humid zone (R2 = 0.83, p = 0.011), yet in the semi-arid zone, it decreased dramatically from 43.0 Mg C ha-1 to 28.4 Mg C ha-1 during the old forest stage (38 to 56 y). The shift from being a net C sink to a net C source occurred at the initial stage in the semi-humid zone versus at the old forest stage in the semi-arid zone after reforestation. Surprisingly, with the exception of the initial and later stages (55 y), the patterns of C allocation among trees, soils, understory and litter were not statistically different between the two climate zones. Our results suggest that climate factors can alter the potential amount and age-related dynamics of forest C sequestration.

  3. Spatial Variation in the Storages and Age-Related Dynamics of Forest Carbon Sequestration in Different Climate Zones—Evidence from Black Locust Plantations on the Loess Plateau of China

    Science.gov (United States)

    Li, Taijun; Ren, Bowen; Wang, Dahui; Liu, Guobin

    2015-01-01

    Knowledge about the long-term influences of climate change on the amount of potential carbon (C) sequestration in forest ecosystems, including age-related dynamics, remains unclear. This study used two similar age-sequences of black locust forests (Robinia pseudoacacia L.) in the semi-arid and semi-humid zones of China’s Loess Plateau to assess the variation in C stocks and age-related dynamics. Our results demonstrated that black locust forests of the semi-humid zone stored significantly more C than did forests in the semi-arid zone, across the chronosequence (p zone, while the semi-arid zone had a capacity of only 79.4 Mg C ha−1. Soil organic C (SOC) increased continuously with stand age in the semi-arid zone (R2 = 0.84, p = 0.010). However, in the semi-humid zone, SOC declined sharply by 47.8% after the initial stage (5 to 10 y). The C stock in trees increased continuously with stand age in the semi-humid zone (R2 = 0.83, p = 0.011), yet in the semi-arid zone, it decreased dramatically from 43.0 Mg C ha−1 to 28.4 Mg C ha−1 during the old forest stage (38 to 56 y). The shift from being a net C sink to a net C source occurred at the initial stage in the semi-humid zone versus at the old forest stage in the semi-arid zone after reforestation. Surprisingly, with the exception of the initial and later stages (55 y), the patterns of C allocation among trees, soils, understory and litter were not statistically different between the two climate zones. Our results suggest that climate factors can alter the potential amount and age-related dynamics of forest C sequestration. PMID:25799100

  4. Shallow Carbon Sequestration Demonstration Project

    Energy Technology Data Exchange (ETDEWEB)

    Pendergrass, Gary; Fraley, David; Alter, William; Bodenhamer, Steven

    2013-09-30

    The potential for carbon sequestration at relatively shallow depths was investigated at four power plant sites in Missouri. Exploratory boreholes were cored through the Davis Shale confining layer into the St. Francois aquifer (Lamotte Sandstone and Bonneterre Formation). Precambrian basement contact ranged from 654.4 meters at the John Twitty Energy Center in Southwest Missouri to over 1100 meters near the Sioux Power Plant in St. Charles County. Investigations at the John Twitty Energy Center included 3D seismic reflection surveys, downhole geophysical logging and pressure testing, and laboratory analysis of rock core and water samples. Plans to perform injectivity tests at the John Twitty Energy Center, using food grade CO{sub 2}, had to be abandoned when the isolated aquifer was found to have very low dissolved solids content. Investigations at the Sioux Plant and Thomas Hill Energy Center in Randolph County found suitably saline conditions in the St. Francois. A fourth borehole in Platte County was discontinued before reaching the aquifer. Laboratory analyses of rock core and water samples indicate that the St. Charles and Randolph County sites could have storage potentials worthy of further study. The report suggests additional Missouri areas for further investigation as well.

  5. Complementary striped expression patterns of NK homeobox genes during segment formation in the annelid Platynereis.

    Science.gov (United States)

    Saudemont, Alexandra; Dray, Nicolas; Hudry, Bruno; Le Gouar, Martine; Vervoort, Michel; Balavoine, Guillaume

    2008-05-15

    NK genes are related pan-metazoan homeobox genes. In the fruitfly, NK genes are clustered and involved in patterning various mesodermal derivatives during embryogenesis. It was therefore suggested that the NK cluster emerged in evolution as an ancestral mesodermal patterning cluster. To test this hypothesis, we cloned and analysed the expression patterns of the homologues of NK cluster genes Msx, NK4, NK3, Lbx, Tlx, NK1 and NK5 in the marine annelid Platynereis dumerilii, a representative of trochozoans, the third great branch of bilaterian animals alongside deuterostomes and ecdysozoans. We found that most of these genes are involved, as they are in the fly, in the specification of distinct mesodermal derivatives, notably subsets of muscle precursors. The expression of the homologue of NK4/tinman in the pulsatile dorsal vessel of Platynereis strongly supports the hypothesis that the vertebrate heart derived from a dorsal vessel relocated to a ventral position by D/V axis inversion in a chordate ancestor. Additionally and more surprisingly, NK4, Lbx, Msx, Tlx and NK1 orthologues are expressed in complementary sets of stripes in the ectoderm and/or mesoderm of forming segments, suggesting an involvement in the segment formation process. A potentially ancient role of the NK cluster genes in segment formation, unsuspected from vertebrate and fruitfly studies so far, now deserves to be investigated in other bilaterian species, especially non-insect arthropods and onychophorans.

  6. The homeobox gene Hex regulates hepatocyte differentiation from embryonic stem cell-derived endoderm.

    Science.gov (United States)

    Kubo, Atsushi; Kim, Yon Hui; Irion, Stefan; Kasuda, Shogo; Takeuchi, Mitsuaki; Ohashi, Kazuo; Iwano, Masayuki; Dohi, Yoshiko; Saito, Yoshihiko; Snodgrass, Ralph; Keller, Gordon

    2010-02-01

    We investigated the role of the hematopoietically expressed homeobox (Hex) in the differentiation and development of hepatocytes within embryonic stem cell (ESC)-derived embryoid bodies (EBs). Analyses of hepatic endoderm derived from Hex(-/-) EBs revealed a dramatic reduction in the levels of albumin (Alb) and alpha-fetoprotein (Afp) expression. In contrast, stage-specific forced expression of Hex in EBs from wild-type ESCs led to the up-regulation of Alb and Afp expression and secretion of Alb and transferrin. These inductive effects were restricted to c-kit(+) endoderm-enriched EB-derived populations, suggesting that Hex functions at the level of hepatic specification of endoderm in this model. Microarray analysis revealed that Hex regulated the expression of a broad spectrum of hepatocyte-related genes, including fibrinogens, apolipoproteins, and cytochromes. When added to the endoderm-induced EBs, bone morphogenetic protein 4 acted synergistically with Hex in the induction of expression of Alb, Afp, carbamoyl phosphate synthetase, transcription factor 1, and CCAAT/enhancer binding protein alpha. These findings indicate that Hex plays a pivotal role during induction of liver development from endoderm in this in vitro model and suggest that this strategy may provide important insight into the generation of functional hepatocytes from ESCs.

  7. Aberrant activity of NKL homeobox gene NKX3-2 in a T-ALL subset

    Science.gov (United States)

    Meyer, Corinna; Kaufmann, Maren; Zaborski, Margarete; MacLeod, Roderick A. F.; Drexler, Hans G.

    2018-01-01

    T-cell acute lymphoblastic leukemia (T-ALL) is a hematopoietic malignancy originating from T-cell progenitors in which differentiation is blocked at early stages. Physiological expression of specific NKL homeobox genes obeys a hematopoietic NKL-code implicated in the process of lymphopoiesis while in differentiated T-cells these genes are silenced. We propose that this developmental expression pattern underlies the observation that NKL homeobox genes are the most ubiquitous group of transcription factors deregulated in T-ALL, including TLX1, TLX3, NKX2-5 and NKX3-1. Here, we describe a novel member of the NKL homeobox gene subclass, NKX3-2 (BAPX1), which is aberrantly activated in 18% of pediatric T-ALL patients analyzed while being normally expressed in developing spleen. Identification of NKX3-2 expression in T-ALL cell line CCRF-CEM qualified these cells to model its deregulation and function in a leukemic context. Genomic and chromosomal analyses demonstrated normal configuration of the NKX3-2 locus at chromosome 4p15, thus excluding cytogenetic dysregulation. Comparative expression profiling analysis of NKX3-2 patient data revealed deregulated activity of BMP- and MAPK-signalling. These candidate pathways were experimentally confirmed to mediate aberrant NKX3-2 expression. We also show that homeobox gene SIX6, plus MIR17HG and GATA3 are downstream targets of NKX3-2 and plausibly contribute to the pathogenesis of this malignancy by suppressing T-cell differentiation. Finally, NKL homeobox gene NKX2-5 was activated by NKX3-2 in CCRF-CEM and by FOXG1 in PEER, representing mutually inhibitory activators of this translocated oncogene. Together, our findings reveal a novel oncogenic NKL homeobox gene subclass member which is aberrantly expressed in a large subset of T-ALL patients and participates in a deregulated gene network likely to arise in developing spleen. PMID:29746601

  8. Conservation of gene linkage in dispersed vertebrate NK homeobox clusters.

    Science.gov (United States)

    Wotton, Karl R; Weierud, Frida K; Juárez-Morales, José L; Alvares, Lúcia E; Dietrich, Susanne; Lewis, Katharine E

    2009-10-01

    Nk homeobox genes are important regulators of many different developmental processes including muscle, heart, central nervous system and sensory organ development. They are thought to have arisen as part of the ANTP megacluster, which also gave rise to Hox and ParaHox genes, and at least some NK genes remain tightly linked in all animals examined so far. The protostome-deuterostome ancestor probably contained a cluster of nine Nk genes: (Msx)-(Nk4/tinman)-(Nk3/bagpipe)-(Lbx/ladybird)-(Tlx/c15)-(Nk7)-(Nk6/hgtx)-(Nk1/slouch)-(Nk5/Hmx). Of these genes, only NKX2.6-NKX3.1, LBX1-TLX1 and LBX2-TLX2 remain tightly linked in humans. However, it is currently unclear whether this is unique to the human genome as we do not know which of these Nk genes are clustered in other vertebrates. This makes it difficult to assess whether the remaining linkages are due to selective pressures or because chance rearrangements have "missed" certain genes. In this paper, we identify all of the paralogs of these ancestrally clustered NK genes in several distinct vertebrates. We demonstrate that tight linkages of Lbx1-Tlx1, Lbx2-Tlx2 and Nkx3.1-Nkx2.6 have been widely maintained in both the ray-finned and lobe-finned fish lineages. Moreover, the recently duplicated Hmx2-Hmx3 genes are also tightly linked. Finally, we show that Lbx1-Tlx1 and Hmx2-Hmx3 are flanked by highly conserved noncoding elements, suggesting that shared regulatory regions may have resulted in evolutionary pressure to maintain these linkages. Consistent with this, these pairs of genes have overlapping expression domains. In contrast, Lbx2-Tlx2 and Nkx3.1-Nkx2.6, which do not seem to be coexpressed, are also not associated with conserved noncoding sequences, suggesting that an alternative mechanism may be responsible for the continued clustering of these genes.

  9. Cost evaluation of CO2 sequestration by aqueous mineral carbonation

    International Nuclear Information System (INIS)

    Huijgen, Wouter J.J.; Comans, Rob N.J.; Witkamp, Geert-Jan

    2007-01-01

    A cost evaluation of CO 2 sequestration by aqueous mineral carbonation has been made using either wollastonite (CaSiO 3 ) or steel slag as feedstock. First, the process was simulated to determine the properties of the streams as well as the power and heat consumption of the process equipment. Second, a basic design was made for the major process equipment, and total investment costs were estimated with the help of the publicly available literature and a factorial cost estimation method. Finally, the sequestration costs were determined on the basis of the depreciation of investments and variable and fixed operating costs. Estimated costs are 102 and 77 EUR/ton CO 2 net avoided for wollastonite and steel slag, respectively. For wollastonite, the major costs are associated with the feedstock and the electricity consumption for grinding and compression (54 and 26 EUR/ton CO 2 avoided, respectively). A sensitivity analysis showed that additional influential parameters in the sequestration costs include the liquid-to-solid ratio in the carbonation reactor and the possible value of the carbonated product. The sequestration costs for steel slag are significantly lower due to the absence of costs for the feedstock. Although various options for potential cost reduction have been identified, CO 2 sequestration by current aqueous carbonation processes seems expensive relative to other CO 2 storage technologies. The permanent and inherently safe sequestration of CO 2 by mineral carbonation may justify higher costs, but further cost reductions are required, particularly in view of (current) prices of CO 2 emission rights. Niche applications of mineral carbonation with a solid residue such as steel slag as feedstock and/or a useful carbonated product hold the best prospects for an economically feasible CO 2 sequestration process. (author)

  10. Black carbon sequestration as an alternative to bioenergy

    International Nuclear Information System (INIS)

    Fowles, Malcolm

    2007-01-01

    Most policy and much research concerning the application of biomass to reduce global warming gas emissions has concentrated either on increasing the Earth's reservoir of biomass or on substituting biomass for fossil fuels, with or without CO 2 sequestration. Suggested approaches entail varied risks of impermanence, delay, high costs, and unknowable side-effects. An under-researched alternative approach is to extract from biomass black (elemental) carbon, which can be permanently sequestered as mineral geomass and may be relatively advantageous in terms of those risks. This paper reviews salient features of black carbon sequestration and uses a high-level quantitative model to compare the approach with the alternative use of biomass to displace fossil fuels. Black carbon has been demonstrated to produce significant benefits when sequestered in agricultural soil, apparently without bad side-effects. Black carbon sequestration appears to be more efficient in general than energy generation, in terms of atmospheric carbon saved per unit of biomass; an exception is where biomass can efficiently displace coal-fired generation. Black carbon sequestration can reasonably be expected to be relatively quick and cheap to apply due to its short value chain and known technology. However, the model is sensitive to several input variables, whose values depend heavily on local conditions. Because characteristics of black carbon sequestration are only known from limited geographical contexts, its worldwide potential will not be known without multiple streams of research, replicated in other contexts. (author)

  11. Algae-Based Carbon Sequestration

    Science.gov (United States)

    Haoyang, Cai

    2018-03-01

    Our civilization is facing a series of environmental problems, including global warming and climate change, which are caused by the accumulation of green house gases in the atmosphere. This article will briefly analyze the current global warming problem and propose a method that we apply algae cultivation to absorb carbon and use shellfish to sequestrate it. Despite the importance of decreasing CO2 emissions or developing carbon-free energy sources, carbon sequestration should be a key issue, since the amount of carbon dioxide that already exists in the atmosphere is great enough to cause global warming. Algae cultivation would be a good choice because they have high metabolism rates and provides shellfish with abundant food that contains carbon. Shellfish’s shells, which are difficult to be decomposed, are reliable storage of carbon, compared to dead organisms like trees and algae. The amount of carbon that can be sequestrated by shellfish is considerable. However, the sequestrating rate of algae and shellfish is not high enough to affect the global climate. Research on algae and shellfish cultivation, including gene technology that aims to create “super plants” and “super shellfish”, is decisive to the solution. Perhaps the baton of history will shift to gene technology, from nuclear physics that has lost appropriate international environment after the end of the Cold War. Gene technology is vital to human survival.

  12. Yield and soil carbon sequestration in grazed pastures sown with two or five forage species

    Science.gov (United States)

    Increasing plant species richness is often associated with an increase in productivity and associated ecosystem services such as soil C sequestration. In this paper we report on a nine-year experiment to evaluate the relative forage production and C sequestration potential of grazed pastures sown to...

  13. Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.

    Science.gov (United States)

    Wen, Bi-Qing; Xing, Mei-Qing; Zhang, Hua; Dai, Cheng; Xue, Hong-Wei

    2011-11-01

    Homeobox transcription factors are involved in various aspects of plant development, including maintenance of the biosynthesis and signaling pathways of different hormones. However, few direct targets of homeobox proteins have been identified. We here show that overexpression of rice homeobox gene HOX1a resulted in enhanced gibberellin (GA) response, indicating a positive effect of HOX1a in GA signaling. HOX1a is induced by GA and encodes a homeobox transcription factor with transcription repression activity. In addition, HOX1a suppresses the transcription of early flowering1 (EL1), a negative regulator of GA signaling, and further electrophoretic mobility shift assay and chromatin immunoprecipitation analysis revealed that HOX1a directly bound to the promoter region of EL1 to suppress its expression and stimulate GA signaling. These results demonstrate that HOX1a functions as a positive regulator of GA signaling by suppressing EL1, providing informative hints on the study of GA signaling. © 2011 Institute of Botany, Chinese Academy of Sciences.

  14. The Lhx9 homeobox gene controls pineal gland development and prevents postnatal hydrocephalus

    DEFF Research Database (Denmark)

    Yamazaki, Fumiyoshi; Møller, Morten; Fu, Cong

    2015-01-01

    Lhx9 is a member of the LIM homeobox gene family. It is expressed during mammalian embryogenesis in the brain including the pineal gland. Deletion of Lhx9 results in sterility due to failure of gonadal development. The current study was initiated to investigate Lhx9 biology in the pineal gland. Lhx...

  15. Spatial variation in the storages and age-related dynamics of forest carbon sequestration in different climate zones-evidence from black locust plantations on the Loess Plateau of China.

    Directory of Open Access Journals (Sweden)

    Taijun Li

    Full Text Available Knowledge about the long-term influences of climate change on the amount of potential carbon (C sequestration in forest ecosystems, including age-related dynamics, remains unclear. This study used two similar age-sequences of black locust forests (Robinia pseudoacacia L. in the semi-arid and semi-humid zones of China's Loess Plateau to assess the variation in C stocks and age-related dynamics. Our results demonstrated that black locust forests of the semi-humid zone stored significantly more C than did forests in the semi-arid zone, across the chronosequence (p < 0.001. The C carrying capacity of the plantations was measured at 166.4 Mg C ha-1 (1 Mg = 106 g in the semi-humid zone, while the semi-arid zone had a capacity of only 79.4 Mg C ha-1. Soil organic C (SOC increased continuously with stand age in the semi-arid zone (R2 = 0.84, p = 0.010. However, in the semi-humid zone, SOC declined sharply by 47.8% after the initial stage (5 to 10 y. The C stock in trees increased continuously with stand age in the semi-humid zone (R2 = 0.83, p = 0.011, yet in the semi-arid zone, it decreased dramatically from 43.0 Mg C ha-1 to 28.4 Mg C ha-1 during the old forest stage (38 to 56 y. The shift from being a net C sink to a net C source occurred at the initial stage in the semi-humid zone versus at the old forest stage in the semi-arid zone after reforestation. Surprisingly, with the exception of the initial and later stages (55 y, the patterns of C allocation among trees, soils, understory and litter were not statistically different between the two climate zones. Our results suggest that climate factors can alter the potential amount and age-related dynamics of forest C sequestration.

  16. A TALE of shrimps: Genome-wide survey of homeobox genes in 120 species from diverse crustacean taxa.

    Science.gov (United States)

    Chang, Wai Hoong; Lai, Alvina G

    2018-01-01

    The homeodomain-containing proteins are an important group of transcription factors found in most eukaryotes including animals, plants and fungi. Homeobox genes are responsible for a wide range of critical developmental and physiological processes, ranging from embryonic development, innate immune homeostasis to whole-body regeneration. With continued fascination on this key class of proteins by developmental and evolutionary biologists, multiple efforts have thus far focused on the identification and characterization of homeobox orthologs from key model organisms in attempts to infer their evolutionary origin and how this underpins the evolution of complex body plans. Despite their importance, the genetic complement of homeobox genes has yet been described in one of the most valuable groups of animals representing economically important food crops. With crustacean aquaculture being a growing industry worldwide, it is clear that systematic and cross-species identification of crustacean homeobox orthologs is necessary in order to harness this genetic circuitry for the improvement of aquaculture sustainability. Using publicly available transcriptome data sets, we identified a total of 4183 putative homeobox genes from 120 crustacean species that include food crop species, such as lobsters, shrimps, crayfish and crabs. Additionally, we identified 717 homeobox orthologs from 6 other non-crustacean arthropods, which include the scorpion, deer tick, mosquitoes and centipede. This high confidence set of homeobox genes will now serve as a key resource to the broader community for future functional and comparative genomics studies.

  17. Developmental and daily expression of the Pax4 and Pax6 homeobox genes in the rat retina: localization of Pax4 in photoreceptor cells

    DEFF Research Database (Denmark)

    Rath, Martin F; Bailey, Michael J; Kim, Jong-So

    2009-01-01

    Pax4 is a homeobox gene encoding Pax4, a transcription factor that is essential for embryonic development of the endocrine pancreas. In the pancreas, Pax4 counters the effects of the related transcription factor, Pax6, which is known to be essential for eye morphogenesis. In this study, we have...... in the foetal eye. Histological analysis revealed that Pax4 mRNA is exclusively expressed in the retinal photoreceptors, whereas Pax6 mRNA and protein are present in the inner nuclear layer and in the ganglion cell layer of the mature retina. In the adult retina, Pax4 transcripts exhibit a diurnal rhythm...

  18. Environmental Externalities of Geological Carbon Sequestration Effects on Energy Scenarios

    International Nuclear Information System (INIS)

    Smekens, K.; Van der Zwaan, B.

    2004-03-01

    Geological carbon sequestration seems one of the promising options to address, in the near term, the global problem of climate change, since carbon sequestration technologies are in principle available today and their costs are expected to be affordable. Whereas extensive technological and economic feasibility studies rightly point out the large potential of this 'clean fossil fuel' option, relatively little attention has been paid so far to the detrimental environmental externalities that the sequestering of CO2 underground could entail. This paper assesses what the relevance might be of including these external effects in long-term energy planning and scenario analyses. Our main conclusion is that, while these effects are generally likely to be relatively small, carbon sequestration externalities do matter and influence the nature of future world energy supply and consumption. More importantly, since geological carbon storage (depending on the method employed) may in some cases have substantial external impacts, in terms of both environmental damage and health risks, it is recommended that extensive studies are performed to quantify these effects. This article addresses three main questions: (1) What may energy supply look like if one accounts for large-scale CO2 sequestration in the construction of long-term energy and climate change scenarios; (2) Suppose one hypothesizes a quantification of the external environmental costs of CO2 sequestration, how do then these supposed costs affect the evolution of the energy system during the 21st century; (3) Does it matter for these scenarios whether carbon sequestration damage costs are charged directly to consumers or, instead, to electricity producers?

  19. Method for carbon dioxide sequestration

    Science.gov (United States)

    Wang, Yifeng; Bryan, Charles R.; Dewers, Thomas; Heath, Jason E.

    2017-12-05

    A method for geo-sequestration of a carbon dioxide includes selection of a target water-laden geological formation with low-permeability interbeds, providing an injection well into the formation and injecting supercritical carbon dioxide (SC-CO.sub.2) and water or bine into the injection well under conditions of temperature, pressure and density selected to cause the fluid to enter the formation and splinter and/or form immobilized ganglia within the formation.

  20. Southeast Regional Carbon Sequestration Partnership

    Energy Technology Data Exchange (ETDEWEB)

    Kenneth J. Nemeth

    2006-08-30

    The Southeast Regional Carbon Sequestration Partnership's (SECARB) Phase I program focused on promoting the development of a framework and infrastructure necessary for the validation and commercial deployment of carbon sequestration technologies. The SECARB program, and its subsequent phases, directly support the Global Climate Change Initiative's goal of reducing greenhouse gas intensity by 18 percent by the year 2012. Work during the project's two-year period was conducted within a ''Task Responsibility Matrix''. The SECARB team was successful in accomplishing its tasks to define the geographic boundaries of the region; characterize the region; identify and address issues for technology deployment; develop public involvement and education mechanisms; identify the most promising capture, sequestration, and transport options; and prepare action plans for implementation and technology validation activity. Milestones accomplished during Phase I of the project are listed below: (1) Completed preliminary identification of geographic boundaries for the study (FY04, Quarter 1); (2) Completed initial inventory of major sources and sinks for the region (FY04, Quarter 2); (3) Completed initial development of plans for GIS (FY04, Quarter 3); (4) Completed preliminary action plan and assessment for overcoming public perception issues (FY04, Quarter 4); (5) Assessed safety, regulatory and permitting issues (FY05, Quarter 1); (6) Finalized inventory of major sources/sinks and refined GIS algorithms (FY05, Quarter 2); (7) Refined public involvement and education mechanisms in support of technology development options (FY05, Quarter 3); and (8) Identified the most promising capture, sequestration and transport options and prepared action plans (FY05, Quarter 4).

  1. Anthropogenic nitrogen deposition enhances carbon sequestration in boreal soils.

    Science.gov (United States)

    Maaroufi, Nadia I; Nordin, Annika; Hasselquist, Niles J; Bach, Lisbet H; Palmqvist, Kristin; Gundale, Michael J

    2015-08-01

    It is proposed that carbon (C) sequestration in response to reactive nitrogen (Nr ) deposition in boreal forests accounts for a large portion of the terrestrial sink for anthropogenic CO2 emissions. While studies have helped clarify the magnitude by which Nr deposition enhances C sequestration by forest vegetation, there remains a paucity of long-term experimental studies evaluating how soil C pools respond. We conducted a long-term experiment, maintained since 1996, consisting of three N addition levels (0, 12.5, and 50 kg N ha(-1) yr(-1) ) in the boreal zone of northern Sweden to understand how atmospheric Nr deposition affects soil C accumulation, soil microbial communities, and soil respiration. We hypothesized that soil C sequestration will increase, and soil microbial biomass and soil respiration will decrease, with disproportionately large changes expected compared to low levels of N addition. Our data showed that the low N addition treatment caused a non-significant increase in the organic horizon C pool of ~15% and a significant increase of ~30% in response to the high N treatment relative to the control. The relationship between C sequestration and N addition in the organic horizon was linear, with a slope of 10 kg C kg(-1) N. We also found a concomitant decrease in total microbial and fungal biomasses and a ~11% reduction in soil respiration in response to the high N treatment. Our data complement previous data from the same study system describing aboveground C sequestration, indicating a total ecosystem sequestration rate of 26 kg C kg(-1) N. These estimates are far lower than suggested by some previous modeling studies, and thus will help improve and validate current modeling efforts aimed at separating the effect of multiple global change factors on the C balance of the boreal region. © 2015 John Wiley & Sons Ltd.

  2. CARBON SEQUESTRATION: A METHODS COMPARATIVE ANALYSIS

    International Nuclear Information System (INIS)

    Christopher J. Koroneos; Dimitrios C. Rovas

    2008-01-01

    All human activities are related with the energy consumption. Energy requirements will continue to rise, due to the modern life and the developing countries growth. Most of the energy demand emanates from fossil fuels. Fossil fuels combustion has negative environmental impacts, with the CO 2 production to be dominating. The fulfillment of the Kyoto protocol criteria requires the minimization of CO 2 emissions. Thus the management of the CO 2 emissions is an urgent matter. The use of appliances with low energy use and the adoption of an energy policy that prevents the unnecessary energy use, can play lead to the reduction of carbon emissions. A different route is the introduction of ''clean'' energy sources, such as renewable energy sources. Last but not least, the development of carbon sequestration methods can be promising technique with big future potential. The objective of this work is the analysis and comparison of different carbon sequestration and deposit methods. Ocean deposit, land ecosystems deposit, geological formations deposit and radical biological and chemical approaches will be analyzed

  3. Mechanisms of Soil Carbon Sequestration

    Science.gov (United States)

    Lal, Rattan

    2015-04-01

    Carbon (C) sequestration in soil is one of the several strategies of reducing the net emission of CO2 into the atmosphere. Of the two components, soil organic C (SOC) and soil inorganic C (SIC), SOC is an important control of edaphic properties and processes. In addition to off-setting part of the anthropogenic emissions, enhancing SOC concentration to above the threshold level (~1.5-2.0%) in the root zone has numerous ancillary benefits including food and nutritional security, biodiversity, water quality, among others. Because of its critical importance in human wellbeing and nature conservancy, scientific processes must be sufficiently understood with regards to: i) the potential attainable, and actual sink capacity of SOC and SIC, ii) permanence of the C sequestered its turnover and mean residence time, iii) the amount of biomass C needed (Mg/ha/yr) to maintain and enhance SOC pool, and to create a positive C budget, iv) factors governing the depth distribution of SOC, v) physical, chemical and biological mechanisms affecting the rate of decomposition by biotic and abiotic processes, vi) role of soil aggregation in sequestration and protection of SOC and SIC pool, vii) the importance of root system and its exudates in transfer of biomass-C into the SOC pools, viii) significance of biogenic processes in formation of secondary carbonates, ix) the role of dissolved organic C (DOC) in sequestration of SOC and SIC, and x) importance of weathering of alumino-silicates (e.g., powered olivine) in SIC sequestration. Lack of understanding of these and other basic processes leads to misunderstanding, inconsistencies in interpretation of empirical data, and futile debates. Identification of site-specific management practices is also facilitated by understanding of the basic processes of sequestration of SOC and SIC. Sustainable intensification of agroecosystems -- producing more from less by enhancing the use efficiency and reducing losses of inputs, necessitates thorough

  4. Big Sky Carbon Sequestration Partnership

    Energy Technology Data Exchange (ETDEWEB)

    Susan M. Capalbo

    2005-11-01

    The Big Sky Carbon Sequestration Partnership, led by Montana State University, is comprised of research institutions, public entities and private sectors organizations, and the Confederated Salish and Kootenai Tribes and the Nez Perce Tribe. Efforts under this Partnership in Phase I fall into four areas: evaluation of sources and carbon sequestration sinks that will be used to determine the location of pilot demonstrations in Phase II; development of GIS-based reporting framework that links with national networks; designing an integrated suite of monitoring, measuring, and verification technologies and assessment frameworks; and initiating a comprehensive education and outreach program. The groundwork is in place to provide an assessment of storage capabilities for CO2 utilizing the resources found in the Partnership region (both geological and terrestrial sinks), that would complement the ongoing DOE research agenda in Carbon Sequestration. The region has a diverse array of geological formations that could provide storage options for carbon in one or more of its three states. Likewise, initial estimates of terrestrial sinks indicate a vast potential for increasing and maintaining soil C on forested, agricultural, and reclaimed lands. Both options include the potential for offsetting economic benefits to industry and society. Steps have been taken to assure that the GIS-based framework is consistent among types of sinks within the Big Sky Partnership area and with the efforts of other DOE regional partnerships. The Partnership recognizes the critical importance of measurement, monitoring, and verification technologies to support not only carbon trading but all policies and programs that DOE and other agencies may want to pursue in support of GHG mitigation. The efforts in developing and implementing MMV technologies for geological sequestration reflect this concern. Research is also underway to identify and validate best management practices for soil C in the

  5. Sequestration of soil nitrogen as tannin-protein complexes may improve the competitive ability of sheep laurel (Kalmia angustifolia) relative to black spruce (Picea mariana).

    Science.gov (United States)

    Joanisse, G D; Bradley, R L; Preston, C M; Bending, G D

    2009-01-01

    The role of litter tannins in controlling soil nitrogen (N) cycling may explain the competitive ability of Kalmia relative to black spruce (Picea mariana), although this has not been demonstrated experimentally. Here, the protein-precipitation capacities of purified tannins and leaf extracts from Kalmia and black spruce were compared. The resistance to degradation of tannin-protein precipitates from both species were compared by monitoring carbon (C) and N dynamics in humus amended with protein, purified tannins or protein-tannin precipitates. The purity of the precipitates was verified using solid-state (13)C nuclear magnetic resonance (NMR) spectra. The ability of mycorrhizal fungi associated with both species to grow on media amended with tannin-protein complexes as the principal N source was also compared. The protein precipitation capacity of Kalmia tannins was superior to those of black spruce. Humus amended with protein increased both mineral and microbial N, whereas humus amended with tannin-protein precipitates increased dissolved organic N. Mycorrhizal fungi associated with Kalmia showed better growth than those associated with black spruce when N was provided as tannin-protein precipitates. These data suggest that Kalmia litter increases the amount of soil N sequestered as tannin-protein complexes, which may improve the competitive ability of Kalmia relative to black spruce by favouring N uptake by mycorrhizas associated with the former.

  6. BIG SKY CARBON SEQUESTRATION PARTNERSHIP

    Energy Technology Data Exchange (ETDEWEB)

    Susan M. Capalbo

    2005-01-31

    The Big Sky Carbon Sequestration Partnership, led by Montana State University, is comprised of research institutions, public entities and private sectors organizations, and the Confederated Salish and Kootenai Tribes and the Nez Perce Tribe. Efforts under this Partnership in Phase I fall into four areas: evaluation of sources and carbon sequestration sinks that will be used to determine the location of pilot demonstrations in Phase II; development of GIS-based reporting framework that links with national networks; designing an integrated suite of monitoring, measuring, and verification technologies and assessment frameworks; and initiating a comprehensive education and outreach program. The groundwork is in place to provide an assessment of storage capabilities for CO{sub 2} utilizing the resources found in the Partnership region (both geological and terrestrial sinks), that would complement the ongoing DOE research. Efforts are underway to showcase the architecture of the GIS framework and initial results for sources and sinks. The region has a diverse array of geological formations that could provide storage options for carbon in one or more of its three states. Likewise, initial estimates of terrestrial sinks indicate a vast potential for increasing and maintaining soil C on forested, agricultural, and reclaimed lands. Both options include the potential for offsetting economic benefits to industry and society. Steps have been taken to assure that the GIS-based framework is consistent among types of sinks within the Big Sky Partnership area and with the efforts of other western DOE partnerships. The Partnership recognizes the critical importance of measurement, monitoring, and verification technologies to support not only carbon trading but all policies and programs that DOE and other agencies may want to pursue in support of GHG mitigation. The efforts in developing and implementing MMV technologies for geological sequestration reflect this concern. Research is

  7. Hurricane impacts on US forest carbon sequestration

    Science.gov (United States)

    Steven G. McNulty

    2002-01-01

    Recent focus has been given to US forests as a sink for increases in atmospheric carbon dioxide. Current estimates of US Forest carbon sequestration average approximately 20 Tg (i.e. 1012 g) year. However, predictions of forest carbon sequestration often do not include the influence of hurricanes on forest carbon storage. Intense hurricanes...

  8. Biochar production for carbon sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Thakkar, J.; Kumar, A. [Alberta Univ., Edmonton, AB (Canada). Dept. of Mechanical Engineering

    2010-07-01

    This study examined the use of agricultural biomass for biochar production and its storage in a landfill to sequester carbon. Capturing the energy from biomass that would otherwise decay, is among the many options available to mitigate the impact of the greenhouse gas (GHG) emissions associated with fossil fuel consumption. Biochar is a solid fuel which can be produced from agricultural biomass such as wheat and barley straw. This organic solid can be produced by slow pyrolysis of straw. A conceptual techno-economic model based on actual data was used to estimate the cost of producing biochar from straw in a centralized plant. The objectives of the study were to estimate the overall delivered cost of straw to the charcoal production plant; estimate the transportation costs of charcoal to the landfill site; estimate the cost of landfill; and estimate the overall cost of carbon sequestration through a charcoal landfill. According to preliminary results, the cost of carbon sequestration through this pathway is greater than $50 per tonne of carbon dioxide.

  9. Identification and Characterization of TALE Homeobox Genes in the Endangered Fern Vandenboschia speciosa.

    Science.gov (United States)

    Ruiz-Estévez, Mercedes; Bakkali, Mohammed; Martín-Blázquez, Rubén; Garrido-Ramos, Manuel A

    2017-10-17

    We report and discuss the results of a quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis of the expression patterns of seven three amino acid loop extension ( TALE ) homeobox genes (four KNOTTED-like homeobox ( KNOX ) and three BEL1-like homeobox ( BELL ) genes) identified after next generation sequencing (NGS) and assembly of the sporophyte and gametophyte transcriptomes of the endangered fern species Vandenboschia speciosa . Among the four KNOX genes, two belonged to the KNOX1 class and the other two belonged to the KNOX2 class. Analysis of the deduced amino acid sequences supported the typical domain structure of both types of TALE proteins, and the homology to TALE proteins of mosses, lycophytes, and seed plant species. The expression analyses demonstrate that these homeodomain proteins appear to have a key role in the establishment and development of the gametophyte and sporophyte phases of V. speciosa lifecycle, as well as in the control of the transition between both phases. Vandenboschia speciosa VsKNAT3 (a KNOX2 class protein) as well as VsBELL4 and VsBELL10 proteins have higher expression levels during the sporophyte program. On the contrary, one V. speciosa KNOX1 protein (VsKNAT6) and one KNOX2 protein (VsKNAT4) seem important during the development of the gametophyte phase. TALE homeobox genes might be among the key regulators in the gametophyte-to-sporophyte developmental transition in regular populations that show alternation of generations, since some of the genes analyzed here ( VsKNAT3 , VsKNAT6 , VsBELL4 , and VsBELL6 ) are upregulated in a non-alternating population in which only independent gametophytes are found (they grow by vegetative reproduction outside of the range of sporophyte distribution). Thus, these four genes might trigger the vegetative propagation of the gametophyte and the repression of the sexual development in populations composed of independent gametophytes. This study represents a comprehensive

  10. Regulated expression of homeobox genes Msx-1 and Msx-2 in mouse mammary gland development suggests a role in hormone action and epithelial-stromal interactions.

    Science.gov (United States)

    Friedmann, Y; Daniel, C W

    1996-07-10

    The murine homeobox genes Msx-1 and Msx-2 are related to the Drosophila msh gene and are expressed in a variety of tissues during mouse embryogenesis. We now report the developmentally regulated expression of Msx-1 and Msx-2 in the mouse mammary gland and show that their expression patterns point toward significant functional roles. Msx-1 and Msx-2 transcripts were present in glands of virgin mice and in glands of mice in early pregnancy, but transcripts decreased dramatically during late pregnancy. Low levels of Msx-1 transcripts were detected in glands from lactating animals and during the first days of involution, whereas Msx-2 expression was not detected during lactation or early involution. Expression of both genes increased gradually as involution progressed. Msx-2 but not Msx-1 expression was decreased following ovariectomy or following exposure to anti-estrogen implanted directly into the gland. Hormonal regulation of Msx-2 expression was confirmed when transcripts returned to normal levels after estrogen was administered to ovariectomized animals. In situ molecular hybridization for Msx-1 showed transcripts localized to the mammary epithelium, whereas Msx-2 expression was confined to the periductal stroma. Mammary stroma from which mammary epithelium had been removed did not transcribe detectable amounts of Msx-2, showing that expression is regulated by contiguous mammary epithelium, and indicating a role for these homeobox genes in mesenchymal-epithelial interactions during mammary development.

  11. Proliferation and osteo/odontogenic differentiation of stem cells from apical papilla regulated by Zinc fingers and homeoboxes 2: An in vitro study

    International Nuclear Information System (INIS)

    Wan, Fang; Gao, Lifen; Lu, Yating; Ma, Hongxin; Wang, Hongxing; Liang, Xiaohong; Wang, Yan; Ma, Chunhong

    2016-01-01

    In the process of tooth root development, stem cells from the apical papilla (SCAPs) can differentiate into odontoblasts and form root dentin, however, molecules regulating SCAPs differentiation have not been elucidated. Zinc fingers and homeoboxes 2 (ZHX2) is a novel transcriptional inhibitor. It is reported to modulate the development of nerve cells, liver cells, B cells, red blood cells, and so on. However, the role of ZHX2 in tooth root development remains unclear. In this study, we explored the potential role of ZHX2 in the process of SCAPs differentiation. The results showed that overexpression of ZHX2 upregulated the expression of osteo/odontogenic related genes and ALP activity, inhibited the proliferation of SCAPs. Consistently, ZHX2 knockdown reduced SCAPs mineralization and promoted SCAPs proliferation. These results indicated that ZHX2 plays a critical role in the proliferation and osteo/odontogenic differentiation of SCAPs. - Highlights: • Zinc fingers and homeoboxes 2 (ZHX2) is a novel transcriptional inhibitor. • we found another new biological function of ZHX2 for the first time. • ZHX2 inhibit SCAPs proliferation. • ZHX2 promote the osteo/odontogenic differentiation of SCAPs.

  12. Proliferation and osteo/odontogenic differentiation of stem cells from apical papilla regulated by Zinc fingers and homeoboxes 2: An in vitro study

    Energy Technology Data Exchange (ETDEWEB)

    Wan, Fang [Department of Immunology, Key Laboratory for Experimental Teratology of Ministry of Education, Shandong Provincial Key Laboratory of Infection & Immunology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012 (China); VIP Center, Shandong Provincial Key Laboratory of Oral Biomedicine, School and Hospital of Stomatology, Shandong University, 44 Wenhua Xi Road, Jinan, Shandong 250012 (China); Gao, Lifen [Department of Immunology, Key Laboratory for Experimental Teratology of Ministry of Education, Shandong Provincial Key Laboratory of Infection & Immunology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012 (China); Lu, Yating [VIP Center, Shandong Provincial Key Laboratory of Oral Biomedicine, School and Hospital of Stomatology, Shandong University, 44 Wenhua Xi Road, Jinan, Shandong 250012 (China); Ma, Hongxin; Wang, Hongxing; Liang, Xiaohong [Department of Immunology, Key Laboratory for Experimental Teratology of Ministry of Education, Shandong Provincial Key Laboratory of Infection & Immunology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012 (China); Wang, Yan, E-mail: wangyan1965@sdu.edu.cn [VIP Center, Shandong Provincial Key Laboratory of Oral Biomedicine, School and Hospital of Stomatology, Shandong University, 44 Wenhua Xi Road, Jinan, Shandong 250012 (China); Ma, Chunhong, E-mail: machunhong@sdu.edu.cn [Department of Immunology, Key Laboratory for Experimental Teratology of Ministry of Education, Shandong Provincial Key Laboratory of Infection & Immunology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012 (China)

    2016-01-15

    In the process of tooth root development, stem cells from the apical papilla (SCAPs) can differentiate into odontoblasts and form root dentin, however, molecules regulating SCAPs differentiation have not been elucidated. Zinc fingers and homeoboxes 2 (ZHX2) is a novel transcriptional inhibitor. It is reported to modulate the development of nerve cells, liver cells, B cells, red blood cells, and so on. However, the role of ZHX2 in tooth root development remains unclear. In this study, we explored the potential role of ZHX2 in the process of SCAPs differentiation. The results showed that overexpression of ZHX2 upregulated the expression of osteo/odontogenic related genes and ALP activity, inhibited the proliferation of SCAPs. Consistently, ZHX2 knockdown reduced SCAPs mineralization and promoted SCAPs proliferation. These results indicated that ZHX2 plays a critical role in the proliferation and osteo/odontogenic differentiation of SCAPs. - Highlights: • Zinc fingers and homeoboxes 2 (ZHX2) is a novel transcriptional inhibitor. • we found another new biological function of ZHX2 for the first time. • ZHX2 inhibit SCAPs proliferation. • ZHX2 promote the osteo/odontogenic differentiation of SCAPs.

  13. Expression of an Msx homeobox gene in ascidians: insights into the archetypal chordate expression pattern.

    Science.gov (United States)

    Ma, L; Swalla, B J; Zhou, J; Dobias, S L; Bell, J R; Chen, J; Maxson, R E; Jeffery, W R

    1996-03-01

    The Msx homeobox genes are expressed in complex patterns during vertebrate development in conjunction with inductive tissue interactions. As a means of understanding the archetypal role of Msx genes in chordates, we have isolated and characterized an Msx gene in ascidians, protochordates with a relatively simple body plan. The Mocu Msx-a and McMsx-a genes, isolated from the ascidians Molgula oculata and Molgula citrina, respectively, have homeodomains that place them in the msh-like subclass of Msx genes. Therefore, the Molgula Msx-a genes are most closely related to the msh genes previously identified in a number of invertebrates. Southern blot analysis suggests that there are one or two copies of the Msx-a gene in the Molgula genome. Northern blot and RNase protection analysis indicate that Msx-a transcripts are restricted to the developmental stages of the life cycle. In situ hybridization showed that Msx-a mRNA first appears just before gastrulation in the mesoderm (presumptive notochord and muscle) and ectoderm (neural plate) cells. Transcript levels decline in mesoderm cells after the completion of gastrulation, but are enhanced in the folding neural plate during neurulation. Later, Msx-a mRNA is also expressed in the posterior ectoderm and in a subset of the tail muscle cells. The ectoderm and mesoderm cells that express Msx-a are undergoing morphogenetic movements during gastrulation, neurulation, and tail formation. Msx-a expression ceases after these cells stop migrating. The ascidian M. citrina, in which adult tissues and organs begin to develop precociously in the larva, was used to study Msx-a expression during adult development. Msx-a transcripts are expressed in the heart primordium and the rudiments of the ampullae, epidermal protrusions with diverse functions in the juvenile. The heart and ampullae develop in regions where mesenchyme cells interact with endodermal or epidermal epithelia. A comparison of the expression patterns of the Molgula genes

  14. Considerations in forecasting the demand for carbon sequestration and biotic storage technologies

    Energy Technology Data Exchange (ETDEWEB)

    Trexler, M.C. [Trexler and Associates, Inc., Portland, OR (United States)

    1997-12-31

    The Intergovernmental Panel on Climate Change (IPCC) has identified forestry and other land-use based mitigation measures as possible sources and sinks of greenhouse gases. An overview of sequestration and biotic storage is presented, and the potential impacts of the use of carbon sequestration as a mitigation technology are briefly noted. Carbon sequestration is also compare to other mitigation technologies. Biotic mitigation technologies are concluded to be a legitimate and potentially important part of greenhouse gas mitigation due to their relatively low costs, ancillary benefits, and climate impact. However, not all biotic mitigation techniques perfectly match the idealized definition of a mitigation measure, and policies are becoming increasingly biased against biotic technologies.

  15. MicroRNA-99 family members suppress Homeobox A1 expression in epithelial cells.

    Directory of Open Access Journals (Sweden)

    Dan Chen

    Full Text Available The miR-99 family is one of the evolutionarily most ancient microRNA families, and it plays a critical role in developmental timing and the maintenance of tissue identity. Recent studies, including reports from our group, suggested that the miR-99 family regulates various physiological processes in adult tissues, such as dermal wound healing, and a number of disease processes, including cancer. By combining 5 independent genome-wide expression profiling experiments, we identified a panel of 266 unique transcripts that were down-regulated in epithelial cells transfected with miR-99 family members. A comprehensive bioinformatics analysis using 12 different sequence-based microRNA target prediction algorithms revealed that 81 out of these 266 down-regulated transcripts are potential direct targets for the miR-99 family. Confirmation experiments and functional analyses were performed to further assess 6 selected miR-99 target genes, including mammalian Target of rapamycin (mTOR, Homeobox A1 (HOXA1, CTD small phosphatase-like (CTDSPL, N-myristoyltransferase 1 (NMT1, Transmembrane protein 30A (TMEM30A, and SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 (SMARCA5. HOXA1 is a known proto-oncogene, and it also plays an important role in embryonic development. The direct targeting of the miR-99 family to two candidate binding sequences located in the HOXA1 mRNA was confirmed using a luciferase reporter gene assay and a ribonucleoprotein-immunoprecipitation (RIP-IP assay. Ectopic transfection of miR-99 family reduced the expression of HOXA1, which, in consequence, down-regulated the expression of its downstream gene (i.e., Bcl-2 and led to reduced proliferation and cell migration, as well as enhanced apoptosis. In summary, we identified a number of high-confidence miR-99 family target genes, including proto-oncogene HOXA1, which may play an important role in regulating epithelial cell proliferation and

  16. MicroRNA-99 family members suppress Homeobox A1 expression in epithelial cells.

    Science.gov (United States)

    Chen, Dan; Chen, Zujian; Jin, Yi; Dragas, Dragan; Zhang, Leitao; Adjei, Barima S; Wang, Anxun; Dai, Yang; Zhou, Xiaofeng

    2013-01-01

    The miR-99 family is one of the evolutionarily most ancient microRNA families, and it plays a critical role in developmental timing and the maintenance of tissue identity. Recent studies, including reports from our group, suggested that the miR-99 family regulates various physiological processes in adult tissues, such as dermal wound healing, and a number of disease processes, including cancer. By combining 5 independent genome-wide expression profiling experiments, we identified a panel of 266 unique transcripts that were down-regulated in epithelial cells transfected with miR-99 family members. A comprehensive bioinformatics analysis using 12 different sequence-based microRNA target prediction algorithms revealed that 81 out of these 266 down-regulated transcripts are potential direct targets for the miR-99 family. Confirmation experiments and functional analyses were performed to further assess 6 selected miR-99 target genes, including mammalian Target of rapamycin (mTOR), Homeobox A1 (HOXA1), CTD small phosphatase-like (CTDSPL), N-myristoyltransferase 1 (NMT1), Transmembrane protein 30A (TMEM30A), and SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 (SMARCA5). HOXA1 is a known proto-oncogene, and it also plays an important role in embryonic development. The direct targeting of the miR-99 family to two candidate binding sequences located in the HOXA1 mRNA was confirmed using a luciferase reporter gene assay and a ribonucleoprotein-immunoprecipitation (RIP-IP) assay. Ectopic transfection of miR-99 family reduced the expression of HOXA1, which, in consequence, down-regulated the expression of its downstream gene (i.e., Bcl-2) and led to reduced proliferation and cell migration, as well as enhanced apoptosis. In summary, we identified a number of high-confidence miR-99 family target genes, including proto-oncogene HOXA1, which may play an important role in regulating epithelial cell proliferation and migration during

  17. Reduced carbon sequestration potential of biochar in acidic soil.

    Science.gov (United States)

    Sheng, Yaqi; Zhan, Yu; Zhu, Lizhong

    2016-12-01

    Biochar application in soil has been proposed as a promising method for carbon sequestration. While factors affecting its carbon sequestration potential have been widely investigated, the number of studies on the effect of soil pH is limited. To investigate the carbon sequestration potential of biochar across a series of soil pH levels, the total carbon emission, CO 2 release from inorganic carbon, and phospholipid fatty acids (PLFAs) of six soils with various pH levels were compared after the addition of straw biochar produced at different pyrolysis temperatures. The results show that the acidic soils released more CO 2 (1.5-3.5 times higher than the control) after the application of biochar compared with neutral and alkaline soils. The degradation of both native soil organic carbon (SOC) and biochar were accelerated. More inorganic CO 2 release in acidic soil contributed to the increased degradation of biochar. Higher proportion of gram-positive bacteria in acidic soil (25%-36%) was responsible for the enhanced biochar degradation and simultaneously co-metabolism of SOC. In addition, lower substrate limitation for bacteria, indicated by higher C-O stretching after the biochar application in the acidic soil, also caused more CO 2 release. In addition to the soil pH, other factors such as clay contents and experimental duration also affected the phsico-chemical and biotic processes of SOC dynamics. Gram-negative/gram-positive bacteria ratio was found to be negatively related to priming effects, and suggested to serve as an indicator for priming effect. In general, the carbon sequestration potential of rice-straw biochar in soil reduced along with the decrease of soil pH especially in a short-term. Given wide spread of acidic soils in China, carbon sequestration potential of biochar may be overestimated without taking into account the impact of soil pH. Copyright © 2016 Elsevier B.V. All rights reserved.

  18. Carbon sequestration via wood burial

    Directory of Open Access Journals (Sweden)

    Zeng Ning

    2008-01-01

    Full Text Available Abstract To mitigate global climate change, a portfolio of strategies will be needed to keep the atmospheric CO2 concentration below a dangerous level. Here a carbon sequestration strategy is proposed in which certain dead or live trees are harvested via collection or selective cutting, then buried in trenches or stowed away in above-ground shelters. The largely anaerobic condition under a sufficiently thick layer of soil will prevent the decomposition of the buried wood. Because a large flux of CO2 is constantly being assimilated into the world's forests via photosynthesis, cutting off its return pathway to the atmosphere forms an effective carbon sink. It is estimated that a sustainable long-term carbon sequestration potential for wood burial is 10 ± 5 GtC y-1, and currently about 65 GtC is on the world's forest floors in the form of coarse woody debris suitable for burial. The potential is largest in tropical forests (4.2 GtC y-1, followed by temperate (3.7 GtC y-1 and boreal forests (2.1 GtC y-1. Burying wood has other benefits including minimizing CO2 source from deforestation, extending the lifetime of reforestation carbon sink, and reducing fire danger. There are possible environmental impacts such as nutrient lock-up which nevertheless appears manageable, but other concerns and factors will likely set a limit so that only part of the full potential can be realized. Based on data from North American logging industry, the cost for wood burial is estimated to be $14/tCO2($50/tC, lower than the typical cost for power plant CO2 capture with geological storage. The cost for carbon sequestration with wood burial is low because CO2 is removed from the atmosphere by the natural process of photosynthesis at little cost. The technique is low tech, distributed, easy to monitor, safe, and reversible, thus an attractive option for large-scale implementation in a world-wide carbon market.

  19. Safe and quick carbon sequestration

    International Nuclear Information System (INIS)

    Tiano, M.

    2016-01-01

    Geological sequestration of carbon dioxyde is considered as an important tool to fight global warming but long term safety is an essential issue due to the risk of accidental leakages. The CarbFix experimentation has shown the possibility to turn hundreds tons of CO 2 into inert carbonated rocks in less than 2 years. This CO 2 injection took place in basaltic rocks. Basaltic rocks allows an adequate diffusion of the gas because of its porosity and favors the acido-base chemical reaction that turns CO 2 into inert and stable carbonates. This experiment was performed with CO 2 dissolved in water in order to limit leaks, basaltic layers being naturally cracked, and to accelerate the formation of carbonates by dissolving the metal ions coming from the rocks. The important quantity of water required for this technique, limits its use to coastal sites. (A.C.)

  20. Maintenance of a living understory enhances soil carbon sequestration in subtropical orchards.

    Science.gov (United States)

    Liu, Zhanfeng; Lin, Yongbiao; Lu, Hongfang; Ding, Mingmao; Tan, Yaowen; Xu, Shejin; Fu, Shenglei

    2013-01-01

    Orchard understory represents an important component of the orchards, performing numerous functions related to soil quality, water relations and microclimate, but little attention has been paid on its effect on soil C sequestration. In the face of global climate change, fruit producers also require techniques that increase carbon (C) sequestration in a cost-effective manner. Here we present a case study to compare the effects of understory management (sod culture vs. clean tillage) on soil C sequestration in four subtropical orchards. The results of a 10-year study indicated that the maintenance of sod significantly enhanced the soil C stock in the top 1 m of orchard soils. Relative to clean tillage, sod culture increased annual soil C sequestration by 2.85 t C ha(-1), suggesting that understory management based on sod culture offers promising potential for soil carbon sequestration. Considering that China has the largest area of orchards in the world and that few of these orchards currently have sod understories, the establishment and maintenance of sod in orchards can help China increase C sequestration and greatly contribute to achieving CO2 reduction targets at a regional scale and potentially at a national scale.

  1. Studies on enhancing carbon sequestration in soils

    International Nuclear Information System (INIS)

    Marland, G.; Garten, C.T.; Post, W.M.; West, T.O.

    2004-01-01

    Studies of carbon and nitrogen dynamics in ecosystems are leading to an understanding of the factors and mechanisms that affect the inputs to and outputs from soils and how these might be manipulated to enhance C sequestration. Both the quantity and the quality of soil C inputs influence C storage and the potential for C sequestration. Changes in tillage intensity and crop rotations can also affect C sequestration by changing the soil physical and biological conditions and by changing the amounts and types of organic inputs to the soil. Analyses of changes in soil C and N balances are being supplemented with studies of the management practices needed to manage soil carbon and the implications for fossil-fuel use, emission of other greenhouse gases (such as N 2 O and CH 4 ), and impacts on agricultural productivity. The Consortium for Research on Enhancing Carbon Sequestration in Terrestrial Ecosystems (CSiTE) was created in 1999 to perform fundamental research that will lead to methods to enhance C sequestration as one component of a C management strategy. Research to date at one member of this consortium, Oak Ridge National Laboratory, has focused on C sequestration in soils and we begin here to draw together some of the results

  2. Consequences of co-benefits for the efficient design of carbon sequestration programs

    International Nuclear Information System (INIS)

    Feng, H.; Kling, C.L.

    2005-01-01

    The social efficiency of private carbon markets that also included trading in agricultural soil carbon sequestration with significant associated co-benefits were considered. Three topics related to the presence of co-benefits that sequester carbon were examined: (1) the consequences of co-benefits from carbon sinks and carbon abatement technology on the efficiency of carbon markets; (2) the efficient supply of carbon sequestration and co-benefits when there is spatial heterogeneity; and (3) the consequences of the presence of a carbon market when there is also a government supported conservation program. Co-benefits from carbon sinks and abatement were considered in relation to the socially efficient level of sequestration. The supply of carbon sequestration and co-benefits were then considered when fields differed in their potential to provide carbon and other environmental benefits. An empirical example of the economic characteristics of carbon sequestration and co-benefits in the Upper Mississippi River Basin was presented, in which the sequestration practice of land retirement with planting of perennial grasses was examined. Two sets of figures were used to illustrate the relationship between the cost of carbon sequestration and its marginal co-benefits: the marginal cost and the marginal co-benefits of carbon sequestration in a carbon market; and the marginal cost of carbon sequestration under a policy designed to maximize a bundle of environmental benefits. It was demonstrated that the relationship between carbon and its associated co-benefits will affect the efficiency of policy instruments designed for carbon sequestration. It was recommended that policy-makers consider that there are already a multitude of existing conservation programmes that result in significant carbon sequestration in many countries, and that nascent carbon markets are emerging in countries that have not ratified the Kyoto Protocol. The efficient level and location of carbon

  3. AP-2α and AP-2β cooperatively orchestrate homeobox gene expression during branchial arch patterning.

    Science.gov (United States)

    Van Otterloo, Eric; Li, Hong; Jones, Kenneth L; Williams, Trevor

    2018-01-25

    The evolution of a hinged moveable jaw with variable morphology is considered a major factor behind the successful expansion of the vertebrates. DLX homeobox transcription factors are crucial for establishing the positional code that patterns the mandible, maxilla and intervening hinge domain, but how the genes encoding these proteins are regulated remains unclear. Herein, we demonstrate that the concerted action of the AP-2α and AP-2β transcription factors within the mouse neural crest is essential for jaw patterning. In the absence of these two proteins, the hinge domain is lost and there are alterations in the size and patterning of the jaws correlating with dysregulation of homeobox gene expression, with reduced levels of Emx, Msx and Dlx paralogs accompanied by an expansion of Six1 expression. Moreover, detailed analysis of morphological features and gene expression changes indicate significant overlap with various compound Dlx gene mutants. Together, these findings reveal that the AP-2 genes have a major function in mammalian neural crest development, influencing patterning of the craniofacial skeleton via the DLX code, an effect that has implications for vertebrate facial evolution, as well as for human craniofacial disorders. © 2018. Published by The Company of Biologists Ltd.

  4. Msx homeobox genes inhibit differentiation through upregulation of cyclin D1.

    Science.gov (United States)

    Hu, G; Lee, H; Price, S M; Shen, M M; Abate-Shen, C

    2001-06-01

    During development, patterning and morphogenesis of tissues are intimately coordinated through control of cellular proliferation and differentiation. We describe a mechanism by which vertebrate Msx homeobox genes inhibit cellular differentiation by regulation of the cell cycle. We show that misexpression of Msx1 via retroviral gene transfer inhibits differentiation of multiple mesenchymal and epithelial progenitor cell types in culture. This activity of Msx1 is associated with its ability to upregulate cyclin D1 expression and Cdk4 activity, while Msx1 has minimal effects on cellular proliferation. Transgenic mice that express Msx1 under the control of the mouse mammary tumor virus long terminal repeat (MMTV LTR) display impaired differentiation of the mammary epithelium during pregnancy, which is accompanied by elevated levels of cyclin D1 expression. We propose that Msx1 gene expression maintains cyclin D1 expression and prevents exit from the cell cycle, thereby inhibiting terminal differentiation of progenitor cells. Our model provides a framework for reconciling the mutant phenotypes of Msx and other homeobox genes with their functions as regulators of cellular proliferation and differentiation during embryogenesis.

  5. Making carbon sequestration a paying proposition

    Science.gov (United States)

    Han, Fengxiang X.; Lindner, Jeff S.; Wang, Chuji

    2007-03-01

    Atmospheric carbon dioxide (CO2) has increased from a preindustrial concentration of about 280 ppm to about 367 ppm at present. The increase has closely followed the increase in CO2 emissions from the use of fossil fuels. Global warming caused by increasing amounts of greenhouse gases in the atmosphere is the major environmental challenge for the 21st century. Reducing worldwide emissions of CO2 requires multiple mitigation pathways, including reductions in energy consumption, more efficient use of available energy, the application of renewable energy sources, and sequestration. Sequestration is a major tool for managing carbon emissions. In a majority of cases CO2 is viewed as waste to be disposed; however, with advanced technology, carbon sequestration can become a value-added proposition. There are a number of potential opportunities that render sequestration economically viable. In this study, we review these most economically promising opportunities and pathways of carbon sequestration, including reforestation, best agricultural production, housing and furniture, enhanced oil recovery, coalbed methane (CBM), and CO2 hydrates. Many of these terrestrial and geological sequestration opportunities are expected to provide a direct economic benefit over that obtained by merely reducing the atmospheric CO2 loading. Sequestration opportunities in 11 states of the Southeast and South Central United States are discussed. Among the most promising methods for the region include reforestation and CBM. The annual forest carbon sink in this region is estimated to be 76 Tg C/year, which would amount to an expenditure of 11.1-13.9 billion/year. Best management practices could enhance carbon sequestration by 53.9 Tg C/year, accounting for 9.3% of current total annual regional greenhouse gas emission in the next 20 years. Annual carbon storage in housing, furniture, and other wood products in 1998 was estimated to be 13.9 Tg C in the region. Other sequestration options

  6. Chrysotile dissolution rates: Implications for carbon sequestration

    International Nuclear Information System (INIS)

    Thom, James G.M.; Dipple, Gregory M.; Power, Ian M.; Harrison, Anna L.

    2013-01-01

    Highlights: • Uncertainties in serpentine dissolution kinetics hinder carbon sequestration models. • A pH dependent, far from equilibrium dissolution rate law for chrysotile. • F chrysotile (mol/m 2 /s) = 10 −0.21pH−10.57 at 22 °C over pH 2–10. • Laboratory dissolution rates consistent with mine waste weathering observations. • Potential for carbon sequestration in mine tailings and aquifers is assessed. - Abstract: Serpentine minerals (e.g., chrysotile) are a potentially important medium for sequestration of CO 2 via carbonation reactions. The goals of this study are to report a steady-state, far from equilibrium chrysotile dissolution rate law and to better define what role serpentine dissolution kinetics will have in constraining rates of carbon sequestration via serpentine carbonation. The steady-state dissolution rate of chrysotile in 0.1 m NaCl solutions was measured at 22 °C and pH ranging from 2 to 8. Dissolution experiments were performed in a continuously stirred flow-through reactor with the input solutions pre-equilibrated with atmospheric CO 2 . Both Mg and Si steady-state fluxes from the chrysotile surface, and the overall chrysotile flux were regressed and the following empirical relationships were obtained: F Mg =-0.22pH-10.02;F Si =-0.19pH-10.37;F chrysotile =-0.21pH-10.57 where F Mg , F Si , and F chrysotile are the log 10 Mg, Si, and molar chrysotile fluxes in mol/m 2 /s, respectively. Element fluxes were used in reaction-path calculations to constrain the rate of CO 2 sequestration in two geological environments that have been proposed as potential sinks for anthropogenic CO 2 . Carbon sequestration in chrysotile tailings at 10 °C is approximately an order of magnitude faster than carbon sequestration in a serpentinite-hosted aquifer at 60 °C on a per kilogram of water basis. A serpentinite-hosted aquifer, however, provides a larger sequestration capacity. The chrysotile dissolution rate law determined in this study has

  7. Risk analysis and liabilities related to CO{sup 2} capture and sequestration in oil reservoirs; Analise de riscos e responsabilidades relacionadas a captura e sequestro de CO2 em reservatorios petroliferos

    Energy Technology Data Exchange (ETDEWEB)

    Costa, Andre Ribeiro [Shell Brasil Ltda., Rio de Janeiro, RJ (Brazil)

    2008-07-01

    Although until the present moment there are no initiatives known to the public regarding carbon capture and sequestration projects to be performed in Brazil, this technique has gained great projection internationally as an initiative that makes it possible to meet the growing energetic and industrial needs of the world while mitigating the release of harmful emissions to the atmosphere. Considering its relevance and the interest of companies and countries in this activity, this paper intends to briefly analyze, from the Brazilian law perspective, the liabilities that would bind companies if they already performed carbon capture and storage in Brazil today. (author)

  8. Proliferation and osteo/odontogenic differentiation of stem cells from apical papilla regulated by Zinc fingers and homeoboxes 2: An in vitro study.

    Science.gov (United States)

    Wan, Fang; Gao, Lifen; Lu, Yating; Ma, Hongxin; Wang, Hongxing; Liang, Xiaohong; Wang, Yan; Ma, Chunhong

    2016-01-15

    In the process of tooth root development, stem cells from the apical papilla (SCAPs) can differentiate into odontoblasts and form root dentin, however, molecules regulating SCAPs differentiation have not been elucidated. Zinc fingers and homeoboxes 2 (ZHX2) is a novel transcriptional inhibitor. It is reported to modulate the development of nerve cells, liver cells, B cells, red blood cells, and so on. However, the role of ZHX2 in tooth root development remains unclear. In this study, we explored the potential role of ZHX2 in the process of SCAPs differentiation. The results showed that overexpression of ZHX2 upregulated the expression of osteo/odontogenic related genes and ALP activity, inhibited the proliferation of SCAPs. Consistently, ZHX2 knockdown reduced SCAPs mineralization and promoted SCAPs proliferation. These results indicated that ZHX2 plays a critical role in the proliferation and osteo/odontogenic differentiation of SCAPs. Copyright © 2015 Elsevier Inc. All rights reserved.

  9. Long-term nitrogen regulation of forest carbon sequestration

    Science.gov (United States)

    Yang, Y.; Luo, Y.

    2009-12-01

    It is well established that nitrogen (N) limits plant production but unclear how N regulates long-term terrestrial carbon (C) sequestration in response to rising atmospheric C dioxide (CO2)(Luo et al., 2004). Most experimental evidence on C-N interactions is primarily derived from short-term CO2 manipulative studies (e.g. Oren et al., 2001; Reich et al., 2006a), which abruptly increase C inputs into ecosystems and N demand from soil while atmospheric CO2 concentration in the real world is gradually increasing over time (Luo & Reynolds, 1999). It is essential to examine long-term N regulations of C sequestration in natural ecosystems. Here we present results of a synthesis of more than 100 studies on long-term C-N interactions during secondary succession. C significantly accumulates in plant, litter and forest floor in most studies, and in mineral soil in one-third studies during stand development. Substantial increases in C stock are tightly coupled with N accretion. The C: N ratio in plant increases with stand age in most cases, but remains relatively constant in litter, forest floor and mineral soil. Our results suggest that natural ecosystems could have the intrinsic capacity to maintain long-term C sequestration through external N accrual, high N use efficiency, and efficient internal N cycling.

  10. CO2 sequestration using principles of shell formation

    Energy Technology Data Exchange (ETDEWEB)

    Lee, Seung-Woo; Jang, Young-Nam [CO2 Sequestration Research Department, Korea Institute of Geoscience and Mineral Resources (Korea, Republic of); Lee, Si-Hyun; Lim, Kyoung-Soo; Jeong, Soon-Kwan [Energy Conservation Research Department of Clean Energy System Research Center, Korea Institute of Energy Research (Korea, Republic of)

    2011-06-15

    The biomimetic sequestration of carbon dioxide to reduce the CO2 emitted into the atmosphere is introduced in this paper. Bivalve shells are used as a good model of CO2 sequestration in this paper, because the shell is derived from the calcium ions and CO2 in seawater. Carbonic anhydrase, hemocyte from diseased shell (HDS) and extrapallial fluid (EFP) are involved in shell formation. This paper compares the soluble protein extracted from Crassostrea gigas with bovine carbonic anhydrase II in terms of their ability to promote CO2 hydration and the production of calcium precipitates. The result demonstrates that HDS has more functional groups to bind calcium ions in aqueous systems, and a different process of calcium precipitation, than does bovine carbonic anhydrase II. To understand molecular weight and secondary protein structure, mass-spectroscopic analysis (MALDI-TOF) and circular dichroism (CD) analysis were used. With regard to EPF, EPF related to shell formation is composed of several fractions and plays a role in sequestration of CO2.

  11. ECONOMIC EVALUATION OF CO2 SEQUESTRATION TECHNOLOGIES

    Energy Technology Data Exchange (ETDEWEB)

    Bert R. Bock; Richard G. Rhudy; David E. Nichols

    2001-07-01

    In order to plan for potential CO{sub 2} mitigation mandates, utilities need better information on CO{sub 2} mitigation options, especially carbon sequestration options that involve non-utility operations. One of the major difficulties in evaluating CO{sub 2} sequestration technologies and practices, both geologic storage of captured CO{sub 2} and storage in biological sinks, is obtaining consistent, transparent, accurate, and comparable economics. This project is comparing the economics of major technologies and practices under development for CO{sub 2} sequestration, including captured CO{sub 2} storage options such as active oil reservoirs, depleted oil and gas reservoirs, deep aquifers, coal beds, and oceans, as well as the enhancement of biological sinks such as forests and croplands. An international group of experts has been assembled to compare on a consistent basis the economics of this diverse array of CO{sub 2} sequestration options. Designs and data collection are nearly complete for each of the CO{sub 2} sequestration options being compared. Initial spreadsheet development has begun on concepts involving storage of captured CO{sub 2}. No significant problems have been encountered, but some additional outside expertise will be accessed to supplement the team's expertise in the areas of life cycle analysis, oil and gas exploration and production, and comparing CO{sub 2} sequestration options that differ in timing and permanence of CO{sub 2} sequestration. Plans for the next reporting period are to complete data collection and a first approximation of the spreadsheet. We expect to complete this project on time and on budget.

  12. Carbon sequestration research and development

    Energy Technology Data Exchange (ETDEWEB)

    Reichle, Dave; Houghton, John; Kane, Bob; Ekmann, Jim; and others

    1999-12-31

    Predictions of global energy use in the next century suggest a continued increase in carbon emissions and rising concentrations of carbon dioxide (CO{sub 2}) in the atmosphere unless major changes are made in the way we produce and use energy--in particular, how we manage carbon. For example, the Intergovernmental Panel on Climate Change (IPCC) predicts in its 1995 ''business as usual'' energy scenario that future global emissions of CO{sub 2} to the atmosphere will increase from 7.4 billion tonnes of carbon (GtC) per year in 1997 to approximately 26 GtC/year by 2100. IPCC also projects a doubling of atmospheric CO{sub 2} concentration by the middle of next century and growing rates of increase beyond. Although the effects of increased CO{sub 2} levels on global climate are uncertain, many scientists agree that a doubling of atmospheric CO{sub 2} concentrations could have a variety of serious environmental consequences. The goal of this report is to identify key areas for research and development (R&D) that could lead to an understanding of the potential for future use of carbon sequestration as a major tool for managing carbon emissions. Under the leadership of DOE, researchers from universities, industry, other government agencies, and DOE national laboratories were brought together to develop the technical basis for conceiving a science and technology road map. That effort has resulted in this report, which develops much of the information needed for the road map.

  13. A novel phenotype of a hepatocyte nuclear factor homeobox A (HNF1A) gene mutation, presenting with neonatal cholestasis

    NARCIS (Netherlands)

    de Vries, Aleida G. M.; Bakker-van Waarde, Willie M.; Dassel, Anne C. M.; Losekoot, Monique; Duiker, Evelien W.; Gouw, Annette S. H.; Bodewes, Frank A. J. A.

    We report a novel phenotype of a hepatocyte nuclear factor homeobox A (HNF1A) mutation (heterozygote c.130dup, p.Leu44fs) presenting with transient neonatal cholestasis, subsequently followed by persistent elevation of transaminases, maturity-onset diabetes of the young (MODY) type 3 and

  14. BIG SKY CARBON SEQUESTRATION PARTNERSHIP

    Energy Technology Data Exchange (ETDEWEB)

    Susan M. Capalbo

    2004-06-01

    The Big Sky Partnership, led by Montana State University, is comprised of research institutions, public entities and private sectors organizations, and the Confederated Salish and Kootenai Tribes and the Nez Perce Tribe. Efforts during the second performance period fall into four areas: evaluation of sources and carbon sequestration sinks; development of GIS-based reporting framework; designing an integrated suite of monitoring, measuring, and verification technologies; and initiating a comprehensive education and outreach program. At the first two Partnership meetings the groundwork was put in place to provide an assessment of capture and storage capabilities for CO{sub 2} utilizing the resources found in the Partnership region (both geological and terrestrial sinks), that would complement the ongoing DOE research. The region has a diverse array of geological formations that could provide storage options for carbon in one or more of its three states. Likewise, initial estimates of terrestrial sinks indicate a vast potential for increasing and maintaining soil C on forested, agricultural, and reclaimed lands. Both options include the potential for offsetting economic benefits to industry and society. Steps have been taken to assure that the GIS-based framework is consistent among types of sinks within the Big Sky Partnership area and with the efforts of other western DOE partnerships. Efforts are also being made to find funding to include Wyoming in the coverage areas for both geological and terrestrial sinks and sources. The Partnership recognizes the critical importance of measurement, monitoring, and verification technologies to support not only carbon trading but all policies and programs that DOE and other agencies may want to pursue in support of GHG mitigation. The efforts begun in developing and implementing MMV technologies for geological sequestration reflect this concern. Research is also underway to identify and validate best management practices for

  15. The economics of soil C sequestration

    Science.gov (United States)

    Alexander, P.; Paustian, K.; Smith, P.; Moran, D.

    2014-12-01

    Carbon is a critical component of soil vitality and of our ability to produce food. Carbon sequestered in soils also provides a further regulating ecosystem service, valued as the avoided damage from global climate change. We consider the demand and supply attributes that underpin and constrain the emergence of a market value for this vital global ecosystem service: markets being what economists regard as the most efficient institutions for allocating scarce resources to the supply and consumption of valuable goods. This paper considers how a potentially large global supply of soil carbon sequestration is reduced by economic and behavioural constraints that impinge on the emergence of markets, and alternative public policies that can efficiently transact demand for the service from private and public sector agents. In essence this is a case of significant market failure. In the design of alternative policy options we consider whether soil carbon mitigation is actually cost-effective relative to other measures in agriculture and elsewhere in the economy, and the nature of behavioural incentives that hinder policy options. We suggest that reducing cost and uncertainties of mitigation through soil-based measures is crucial for improving uptake. Monitoring and auditing processes will also be required to eventually facilitate wide-scale adoption of these measures.

  16. A TALE of shrimps: Genome-wide survey of homeobox genes in 120 species from diverse crustacean taxa [version 1; referees: 2 approved, 1 approved with reservations

    Directory of Open Access Journals (Sweden)

    Wai Hoong Chang

    2018-01-01

    Full Text Available The homeodomain-containing proteins are an important group of transcription factors found in most eukaryotes including animals, plants and fungi. Homeobox genes are responsible for a wide range of critical developmental and physiological processes, ranging from embryonic development, innate immune homeostasis to whole-body regeneration. With continued fascination on this key class of proteins by developmental and evolutionary biologists, multiple efforts have thus far focused on the identification and characterization of homeobox orthologs from key model organisms in attempts to infer their evolutionary origin and how this underpins the evolution of complex body plans. Despite their importance, the genetic complement of homeobox genes has yet been described in one of the most valuable groups of animals representing economically important food crops. With crustacean aquaculture being a growing industry worldwide, it is clear that systematic and cross-species identification of crustacean homeobox orthologs is necessary in order to harness this genetic circuitry for the improvement of aquaculture sustainability. Using publicly available transcriptome data sets, we identified a total of 4183 putative homeobox genes from 120 crustacean species that include food crop species, such as lobsters, shrimps, crayfish and crabs. Additionally, we identified 717 homeobox orthologs from 6 other non-crustacean arthropods, which include the scorpion, deer tick, mosquitoes and centipede. This high confidence set of homeobox genes will now serve as a key resource to the broader community for future functional and comparative genomics studies.

  17. Technological Development in Carbon Sequestration at Petrobras

    Energy Technology Data Exchange (ETDEWEB)

    Castello Branco, R.; Vazquez Sebastian, G.; Murce, T.; Cunha, P.; Dino, R.; Sartori Santarosa, C.

    2007-07-01

    Petrobras defined, in its mission, the intention to act in a safe and profitable way, with social and environmental responsibility. In its vision, the company decided to be an oil and energy company, taking into account climate change mitigation. These changes were partially caused, without the company's knowledge, for many years, by the burning of fossil fuels. Among many technologies available for this mitigation, carbon sequestration is the one that, in a short space of time, can avoid the collapse of earth's climate. In order to meet this carbon sequestration challenge, there has been established, at CENPES, three strategies for its technological development: (i) establishment of a Systemic Project for Carbon Sequestration within the scope of the Environmental Technology Program - PROAMB; (ii) creation of a Group of Carbon Sequestration Technologies for Climate Change Mitigation - formation of team and qualification program, which includes the realization of the International Seminar on Carbon Sequestration and Climate Change at Petrobras in October 2006; and (iii) Implementation of the Technological Network of Technologies for Climate Change Mitigation. (auth)

  18. Altered epigenetic regulation of homeobox genes in human oral squamous cell carcinoma cells

    Energy Technology Data Exchange (ETDEWEB)

    Marcinkiewicz, Katarzyna M.; Gudas, Lorraine J., E-mail: ljgudas@med.cornell.edu

    2014-01-01

    To gain insight into oral squamous cell carcinogenesis, we performed deep sequencing (RNAseq) of non-tumorigenic human OKF6-TERT1R and tumorigenic SCC-9 cells. Numerous homeobox genes are differentially expressed between OKF6-TERT1R and SCC-9 cells. Data from Oncomine, a cancer microarray database, also show that homeobox (HOX) genes are dysregulated in oral SCC patients. The activity of Polycomb repressive complexes (PRC), which causes epigenetic modifications, and retinoic acid (RA) signaling can control HOX gene transcription. HOXB7, HOXC10, HOXC13, and HOXD8 transcripts are higher in SCC-9 than in OKF6-TERT1R cells; using ChIP (chromatin immunoprecipitation) we detected PRC2 protein SUZ12 and the epigenetic H3K27me3 mark on histone H3 at these genes in OKF6-TERT1R, but not in SCC-9 cells. In contrast, IRX1, IRX4, SIX2 and TSHZ3 transcripts are lower in SCC-9 than in OKF6-TERT1R cells. We detected SUZ12 and the H3K27me3 mark at these genes in SCC-9, but not in OKF6-TERT1R cells. SUZ12 depletion increased HOXB7, HOXC10, HOXC13, and HOXD8 transcript levels and decreased the proliferation of OKF6-TERT1R cells. Transcriptional responses to RA are attenuated in SCC-9 versus OKF6-TERT1R cells. SUZ12 and H3K27me3 levels were not altered by RA at these HOX genes in SCC-9 and OKF6-TERT1R cells. We conclude that altered activity of PRC2 is associated with dysregulation of homeobox gene expression in human SCC cells, and that this dysregulation potentially plays a role in the neoplastic transformation of oral keratinocytes. - Highlights: • RNAseq elucidates differences between non-tumorigenic and tumorigenic oral keratinocytes. • Changes in HOX mRNA in SCC-9 vs. OKF6-TERT1R cells are a result of altered epigenetic regulation. • RNAseq shows that retinoic acid (RA) influences gene expression in both OKF6-TERT1R and SCC-9 cells.

  19. Altered epigenetic regulation of homeobox genes in human oral squamous cell carcinoma cells

    International Nuclear Information System (INIS)

    Marcinkiewicz, Katarzyna M.; Gudas, Lorraine J.

    2014-01-01

    To gain insight into oral squamous cell carcinogenesis, we performed deep sequencing (RNAseq) of non-tumorigenic human OKF6-TERT1R and tumorigenic SCC-9 cells. Numerous homeobox genes are differentially expressed between OKF6-TERT1R and SCC-9 cells. Data from Oncomine, a cancer microarray database, also show that homeobox (HOX) genes are dysregulated in oral SCC patients. The activity of Polycomb repressive complexes (PRC), which causes epigenetic modifications, and retinoic acid (RA) signaling can control HOX gene transcription. HOXB7, HOXC10, HOXC13, and HOXD8 transcripts are higher in SCC-9 than in OKF6-TERT1R cells; using ChIP (chromatin immunoprecipitation) we detected PRC2 protein SUZ12 and the epigenetic H3K27me3 mark on histone H3 at these genes in OKF6-TERT1R, but not in SCC-9 cells. In contrast, IRX1, IRX4, SIX2 and TSHZ3 transcripts are lower in SCC-9 than in OKF6-TERT1R cells. We detected SUZ12 and the H3K27me3 mark at these genes in SCC-9, but not in OKF6-TERT1R cells. SUZ12 depletion increased HOXB7, HOXC10, HOXC13, and HOXD8 transcript levels and decreased the proliferation of OKF6-TERT1R cells. Transcriptional responses to RA are attenuated in SCC-9 versus OKF6-TERT1R cells. SUZ12 and H3K27me3 levels were not altered by RA at these HOX genes in SCC-9 and OKF6-TERT1R cells. We conclude that altered activity of PRC2 is associated with dysregulation of homeobox gene expression in human SCC cells, and that this dysregulation potentially plays a role in the neoplastic transformation of oral keratinocytes. - Highlights: • RNAseq elucidates differences between non-tumorigenic and tumorigenic oral keratinocytes. • Changes in HOX mRNA in SCC-9 vs. OKF6-TERT1R cells are a result of altered epigenetic regulation. • RNAseq shows that retinoic acid (RA) influences gene expression in both OKF6-TERT1R and SCC-9 cells

  20. SOUTHWEST REGIONAL PARTNERSHIP ON CARBON SEQUESTRATION

    Energy Technology Data Exchange (ETDEWEB)

    Brian McPherson; Rick Allis; Barry Biediger; Joel Brown; Jim Cappa; George Guthrie; Richard Hughes; Eugene Kim; Robert Lee; Dennis Leppin; Charles Mankin; Orman Paananen; Rajesh Pawar; Tarla Peterson; Steve Rauzi; Jerry Stuth; Genevieve Young

    2004-11-01

    The Southwest Partnership Region includes six whole states, including Arizona, Colorado, Kansas, New Mexico, Oklahoma, and Utah, roughly one-third of Texas, and significant portions of adjacent states. The Partnership comprises a large, diverse group of expert organizations and individuals specializing in carbon sequestration science and engineering, as well as public policy and outreach. The main objective of the Southwest Partnership project is to achieve an 18% reduction in carbon intensity by 2012. The Partnership made great progress in this first year. Action plans for possible Phase II carbon sequestration pilot tests in the region are almost finished, including both technical and non-technical aspects necessary for developing and carrying out these pilot tests. All partners in the Partnership are taking an active role in evaluating and ranking optimum sites and technologies for capture and storage of CO{sub 2} in the Southwest Region. We are identifying potential gaps in all aspects of potential sequestration deployment issues.

  1. The homeobox gene Msx in development and transdifferentiation of jellyfish striated muscle.

    Science.gov (United States)

    Galle, Sabina; Yanze, Nathalie; Seipel, Katja

    2005-01-01

    Bilaterian Msx homeobox genes are generally expressed in areas of cell proliferation and in association with multipotent progenitor cells. Likewise, jellyfish Msx is expressed in progenitor cells of the developing entocodon, a cell layer giving rise to the striated and smooth muscles of the medusa. However, in contrast to the bilaterian homologs, Msx gene expression is maintained at high levels in the differentiated striated muscle of the medusa in vivo and in vitro. This tissue exhibits reprogramming competence. Upon induction, the Msx gene is immediately switched off in the isolated striated muscle undergoing transdifferentiation, to be upregulated again in the emerging smooth muscle cells which, in a stem cell like manner, undergo quantal cell divisions producing two cell types, a proliferating smooth muscle cell and a differentiating nerve cell. This study indicates that the Msx protein may be a key component of the reprogramming machinery responsible for the extraordinary transdifferentation and regeneration potential of striated muscle in the hydrozoan jellyfish.

  2. Epidermal dysplasia and abnormal hair follicles in transgenic mice overexpressing homeobox gene MSX-2.

    Science.gov (United States)

    Jiang, T X; Liu, Y H; Widelitz, R B; Kundu, R K; Maxson, R E; Chuong, C M

    1999-08-01

    The homeobox gene Msx-2 is expressed specifically in sites of skin appendage formation. To explore its part in skin morphogenesis, we produced transgenic mice expressing Msx-2 under the control of the cytomegalovirus promoter. The skin of these transgenic mice was flaky, exhibiting desquamation and shorter hairs. Histologic analysis showed thickened epidermis with hyperproliferation, which was restricted to the basal layer. Hyperkeratosis was also evident. A wide zone of suprabasal cells were misaligned and coexpressed keratins 14 and 10. There was reduced expression of integrin beta 1 and DCC in the basal layer. Hair follicles were misaligned with a shrunken matrix region. The dermis showed increased cellularity and empty vacuoles. We suggest that Msx-2 is involved in the growth control of skin and skin appendages.

  3. Expansion of TALE homeobox genes and the evolution of spiralian development.

    Science.gov (United States)

    Morino, Yoshiaki; Hashimoto, Naoki; Wada, Hiroshi

    2017-12-01

    Spiralians, including molluscs, annelids and platyhelminths, share a unique development process that includes the typical geometry of early cleavage and early segregation of cell fate in blastomeres along the animal-vegetal axis. However, the molecular mechanisms underlying this early cell fate segregation are largely unknown. Here, we report spiralian-specific expansion of the three-amino-acid loop extension (TALE) class of homeobox genes. During early development, some of these TALE genes are expressed in staggered domains along the animal-vegetal axis in the limpet Nipponacmea fuscoviridis and the polychaete Spirobranchus kraussii. Inhibition or overexpression of these genes alters the developmental fate of blastomeres, as predicted by the gene expression patterns. These results suggest that the expansion of novel TALE genes plays a critical role in the establishment of a novel cell fate segregation mechanism in spiralians.

  4. EVEN-SKIPPED HOMEOBOX 1 controls human ES cell differentiation by directly repressing GOOSECOID expression

    DEFF Research Database (Denmark)

    Kalisz, Mark; Winzi, Maria Karin; Bisgaard, Hanne Cathrine

    2012-01-01

    (EVX1) and GOOSECOID (GSC) regulate cell fate decisions in streak-like progenitors derived from human ES cells exposed to BMP4 and/or activin. We found that EVX1 repressed GSC expression and promoted formation of posterior streak-like progeny in response to BMP4, and conversely that GSC repressed EVX1...... expression and was required for development of anterior streak-like progeny in response to activin. Chromatin immunoprecipitation assays showed that EVX1 bound to the GSC 5'-flanking region in BMP4 treated human ES cells, and band shift assays identified two EVX1 binding sites in the GSC 5'-region......TGFß signaling patterns the primitive streak, yet little is known about transcriptional effectors that mediate the cell fate choices during streak-like development in mammalian embryos and in embryonic stem (ES) cells. Here we demonstrate that cross-antagonistic actions of EVEN-SKIPPED HOMEOBOX 1...

  5. A modulatory role of the Rax homeobox gene in mature pineal gland function

    DEFF Research Database (Denmark)

    Rohde, Kristian; Bering, Tenna; Furukawa, Takahisa

    2017-01-01

    The retinal and anterior neural fold homeobox gene (Rax) controls development of the eye and the forebrain. Postnatal expression of Rax in the brain is restricted to the pineal gland, a forebrain structure devoted to melatonin synthesis. The role of Rax in pineal function is unknown. In order...... to investigate the role of Rax in pineal function while circumventing forebrain abnormalities of the global Rax knockout, we generated an eye and pineal-specific Rax conditional knockout mouse. Deletion of Rax in the pineal gland did not affect morphology of the gland, suggesting that Rax is not essential...... for the nucleus to develop. Telemetric analyses confirmed the lack of a functional circadian clock. Arylalkylamine N-acetyltransferase (Aanat) transcripts, encoding the melatonin rhythm-generating enzyme, were undetectable in the pineal gland of the Rax conditional knockout under normal conditions, whereas...

  6. Ontogenetic expression of the Otx2 and Crx homeobox genes in the retina of the rat

    DEFF Research Database (Denmark)

    Rath, Martin F; Morin, Fabrice; Shi, Qiong

    2007-01-01

    . This confirmed the presence of Otx2 mRNA in both the embryonic retinal pigment epithelium and the developing neural retina. During development, the expression of Otx2 persists in the pigment epithelium, whereas Otx2 expression of the neural retina becomes progressively restricted to the outer nuclear layer......Otx2 and Crx are vertebrate orthologs of the orthodenticle family of homeobox genes, which are involved in retinal development. In this study, the temporal expression patterns of Otx2 and Crx in the rat retina during embryonic and postnatal stages of development were analyzed in detail...... and the outer part of the inner nuclear layer. Immunohistochemistry revealed that Otx2 protein is also present in cell bodies of the ganglion cell layer, which does not contain the Otx2 transcript, suggesting that Otx2 protein is synthesized in cell bodies of the bipolar neurons and then transported...

  7. Calcisponges have a ParaHox gene and dynamic expression of dispersed NK homeobox genes.

    Science.gov (United States)

    Fortunato, Sofia A V; Adamski, Marcin; Ramos, Olivia Mendivil; Leininger, Sven; Liu, Jing; Ferrier, David E K; Adamska, Maja

    2014-10-30

    Sponges are simple animals with few cell types, but their genomes paradoxically contain a wide variety of developmental transcription factors, including homeobox genes belonging to the Antennapedia (ANTP) class, which in bilaterians encompass Hox, ParaHox and NK genes. In the genome of the demosponge Amphimedon queenslandica, no Hox or ParaHox genes are present, but NK genes are linked in a tight cluster similar to the NK clusters of bilaterians. It has been proposed that Hox and ParaHox genes originated from NK cluster genes after divergence of sponges from the lineage leading to cnidarians and bilaterians. On the other hand, synteny analysis lends support to the notion that the absence of Hox and ParaHox genes in Amphimedon is a result of secondary loss (the ghost locus hypothesis). Here we analysed complete suites of ANTP-class homeoboxes in two calcareous sponges, Sycon ciliatum and Leucosolenia complicata. Our phylogenetic analyses demonstrate that these calcisponges possess orthologues of bilaterian NK genes (Hex, Hmx and Msx), a varying number of additional NK genes and one ParaHox gene, Cdx. Despite the generation of scaffolds spanning multiple genes, we find no evidence of clustering of Sycon NK genes. All Sycon ANTP-class genes are developmentally expressed, with patterns suggesting their involvement in cell type specification in embryos and adults, metamorphosis and body plan patterning. These results demonstrate that ParaHox genes predate the origin of sponges, thus confirming the ghost locus hypothesis, and highlight the need to analyse the genomes of multiple sponge lineages to obtain a complete picture of the ancestral composition of the first animal genome.

  8. A role for the transcription factor NK2 homeobox 1 in schizophrenia: Convergent evidence from animal and human studies

    Directory of Open Access Journals (Sweden)

    Eva Albertsen Malt

    2016-03-01

    Full Text Available Schizophrenia is a highly heritable disorder with diverse mental and somatic symptoms. The molecular mechanisms leading from genes to disease pathology in schizophrenia remain largely unknown. Genome-wide association studies have shown that common single-nucleotide polymorphisms associated with specific diseases are enriched in the recognition sequences of transcription factors that regulate physiological processes relevant to the disease. We have used a bottom-up approach and tracked a developmental trajectory from embryology to physiological processes and behavior and recognized that the transcription factor NK2 homeobox 1 (NKX2-1 possesses properties of particular interest for schizophrenia. NKX2-1 is selectively expressed from prenatal development to adulthood in the brain, thyroid gland, parathyroid gland, lungs, skin, and enteric ganglia, and has key functions at the interface of the brain, the endocrine-, and the immune system. In the developing brain, NKX2-1-expressing progenitor cells differentiate into distinct subclasses of forebrain GABAergic and cholinergic neurons, astrocytes, and oligodendrocytes. The transcription factor is highly expressed in mature limbic circuits related to context-dependent goal-directed patterns of behavior, social interaction and reproduction, fear responses, responses to light, and other homeostatic processes. It is essential for development and mature function of the thyroid gland and the respiratory system, and is involved in calcium metabolism and immune responses. NKX2-1 interacts with a number of genes identified as susceptibility genes for schizophrenia. We suggest that NKX2-1 may lie at the core of several dose dependent pathways that are dysregulated in schizophrenia. We correlate the symptoms seen in schizophrenia with the temporal and spatial activities of NKX2-1 in order to highlight promising future research areas.

  9. Status and potential of terrestrial carbon sequestration in West Virginia

    Science.gov (United States)

    Benktesh D. Sharma; Jingxin. Wang

    2011-01-01

    Terrestrial ecosystem management offers cost-effective ways to enhance carbon (C) sequestration. This study utilized C stock and C sequestration in forest and agricultural lands, abandoned mine lands, and harvested wood products to estimate the net current annual C sequestration in West Virginia. Several management options within these components were simulated using a...

  10. A General Methodology for Evaluation of Carbon Sequestration Activities and Carbon Credits

    Energy Technology Data Exchange (ETDEWEB)

    Klasson, KT

    2002-12-23

    A general methodology was developed for evaluation of carbon sequestration technologies. In this document, we provide a method that is quantitative, but is structured to give qualitative comparisons despite changes in detailed method parameters, i.e., it does not matter what ''grade'' a sequestration technology gets but a ''better'' technology should receive a better grade. To meet these objectives, we developed and elaborate on the following concepts: (1) All resources used in a sequestration activity should be reviewed by estimating the amount of greenhouse gas emissions for which they historically are responsible. We have done this by introducing a quantifier we term Full-Cycle Carbon Emissions, which is tied to the resource. (2) The future fate of sequestered carbon should be included in technology evaluations. We have addressed this by introducing a variable called Time-adjusted Value of Carbon Sequestration to weigh potential future releases of carbon, escaping the sequestered form. (3) The Figure of Merit of a sequestration technology should address the entire life-cycle of an activity. The figures of merit we have developed relate the investment made (carbon release during the construction phase) to the life-time sequestration capacity of the activity. To account for carbon flows that occur during different times of an activity we incorporate the Time Value of Carbon Flows. The methodology we have developed can be expanded to include financial, social, and long-term environmental aspects of a sequestration technology implementation. It does not rely on global atmospheric modeling efforts but is consistent with these efforts and could be combined with them.

  11. Carbon dioxide sequestration by mineral carbonation

    NARCIS (Netherlands)

    Huijgen, W.J.J.

    2007-01-01

    The increasing atmospheric carbon dioxide (CO2) concentration, mainly caused by fossil fuel combustion, has lead to concerns about global warming. A possible technology that can contribute to the reduction of carbon dioxide emissions is CO2 sequestration by mineral carbonation. The basic concept

  12. Bile acid sequestrants : more than simple resins

    NARCIS (Netherlands)

    Out, Carolien; Groen, Albert K.; Brufau, Gemma

    Purpose of review Bile acid sequestrants (BAS) have been used for more than 50 years in the treatment of hypercholesterolemia. The last decade, bile acids are emerging as integrated regulators of metabolism via induction of various signal transduction pathways. Consequently, BAS treatment may exert

  13. DOE Ocean Carbon Sequestration Research Workshop 2005

    Energy Technology Data Exchange (ETDEWEB)

    Sarmiento, Jorge L. [Princeton Univ., NJ (United States); Chavez, Francisco [Monterey Bay Aquarium Research Inst. (MBARI), Moss Landing, CA (United States); Maltrud, Matthew [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Adams, Eric [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States); Arrigo, Kevin [Stanford Univ., CA (United States). Dept. of Geophysics; Barry, James [Monterey Bay Aquarium Research Inst. (MBARI), Moss Landing, CA (United States); Carmen, Kevin [Louisiana State Univ., Baton Rouge, LA (United States); Bishop, James [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States); Bleck, Rainer [Los Alamos National Lab. (LANL), Los Alamos, NM (United States); Gruber, Niki [Univ. of California, Los Angeles, CA (United States); Erickson, David [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Kennett, James [Univ. of California, Santa Barbara, CA (United States); Tsouris, Costas [Oak Ridge National Lab. (ORNL), Oak Ridge, TN (United States); Tagliabue, Alessandro [Lab. of Climate and Environmental Sciences (LSCE), Gif-sur-Yvette (France); Paytan, Adina [Stanford Univ., CA (United States); Repeta, Daniel [Woods Hole Oceanographic Inst. (WHOI), Woods Hole, MA (United States); Yager, Patricia L. [Univ. of Georgia, Athens, GA (United States); Marshall, John [Massachusetts Inst. of Technology (MIT), Cambridge, MA (United States); Gnanadesikan, Anand [Geophysical Fluid Dynamics Lab. (GFDL), Princeton, NJ (United States)

    2007-01-11

    The purpose of this proposal was to fund a workshop to bring together the principal investigators of all the projects that were being funded under the DOE ocean carbon sequestration research program. The primary goal of the workshop was to interchange research results, to discuss ongoing research, and to identify future research priorities. In addition, we hoped to encourage the development of synergies and collaborations between the projects and to write an EOS article summarizing the results of the meeting. Appendix A summarizes the plan of the workshop as originally proposed, Appendix B lists all the principal investigators who were able to attend the workshop, Appendix C shows the meeting agenda, and Appendix D lists all the abstracts that were provided prior to the meeting. The primary outcome of the meeting was a decision to write two papers for the reviewed literature on carbon sequestration by iron fertilization, and on carbon sequestration by deep sea injection and to examine the possibility of an overview article in EOS on the topic of ocean carbon sequestration.

  14. Carbon sequestration in wood and paper products

    Science.gov (United States)

    Kenneth E. Skog; Geraldine A. Nicholson

    2000-01-01

    Recognition that increasing levels of CO2 in the atmosphere will affect the global climate has spurred research into reduction global carbon emissions and increasing carbon sequestration. The main nonhuman sources of atmospheric CO2 are animal respiration and decay of biomass. However, increases in atmospheric levels are...

  15. Carbon sequestration and natural longleaf pine ecosystems

    Science.gov (United States)

    Ralph S. Meldahl; John S. Kush

    2006-01-01

    A fire-maintained longleaf pine (Pinus palustris Mill.) ecosystem may offer the best option for carbon (C) sequestration among the southern pines. Longleaf is the longest living of the southern pines, and products from longleaf pine will sequester C longer than most since they are likely to be solid wood products such as structural lumber and poles....

  16. Temporal Considerations of Carbon Sequestration in LCA

    Science.gov (United States)

    James Salazar; Richard Bergman

    2013-01-01

    Accounting for carbon sequestration in LCA illustrates the limitations of a single global warming characterization factor. Typical cradle-to-grave LCA models all emissions from end-of-life processes and then characterizes these flows by IPCC GWP (100-yr) factors. A novel method estimates climate change impact by characterizing annual emissions with the IPCC GHG forcing...

  17. Southwest Regional Partnership on Carbon Sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Brian McPherson

    2006-03-31

    The Southwest Partnership on Carbon Sequestration completed its Phase I program in December 2005. The main objective of the Southwest Partnership Phase I project was to evaluate and demonstrate the means for achieving an 18% reduction in carbon intensity by 2012. Many other goals were accomplished on the way to this objective, including (1) analysis of CO{sub 2} storage options in the region, including characterization of storage capacities and transportation options, (2) analysis and summary of CO{sub 2} sources, (3) analysis and summary of CO{sub 2} separation and capture technologies employed in the region, (4) evaluation and ranking of the most appropriate sequestration technologies for capture and storage of CO{sub 2} in the Southwest Region, (5) dissemination of existing regulatory/permitting requirements, and (6) assessing and initiating public knowledge and acceptance of possible sequestration approaches. Results of the Southwest Partnership's Phase I evaluation suggested that the most convenient and practical ''first opportunities'' for sequestration would lie along existing CO{sub 2} pipelines in the region. Action plans for six Phase II validation tests in the region were developed, with a portfolio that includes four geologic pilot tests distributed among Utah, New Mexico, and Texas. The Partnership will also conduct a regional terrestrial sequestration pilot program focusing on improved terrestrial MMV methods and reporting approaches specific for the Southwest region. The sixth and final validation test consists of a local-scale terrestrial pilot involving restoration of riparian lands for sequestration purposes. The validation test will use desalinated waters produced from one of the geologic pilot tests. The Southwest Regional Partnership comprises a large, diverse group of expert organizations and individuals specializing in carbon sequestration science and engineering, as well as public policy and outreach. These partners

  18. International Collaboration on CO2 Sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Peter H. Israelsson; E. Eric Adams

    2007-06-30

    On December 4, 1997, the US Department of Energy (USDOE), the New Energy and Industrial Technology Development Organization of Japan (NEDO), and the Norwegian Research Council (NRC) entered into a Project Agreement for International Collaboration on CO{sub 2} Ocean Sequestration. Government organizations from Japan, Canada, and Australia, and a Swiss/Swedish engineering firm later joined the agreement, which outlined a research strategy for ocean carbon sequestration via direct injection. The members agreed to an initial field experiment, with the hope that if the initial experiment was successful, there would be subsequent field evaluations of increasingly larger scale to evaluate environmental impacts of sequestration and the potential for commercialization. The evolution of the collaborative effort, the supporting research, and results for the International Collaboration on CO{sub 2} Ocean Sequestration were documented in almost 100 papers and reports, including 18 peer-reviewed journal articles, 46 papers, 28 reports, and 4 graduate theses. These efforts were summarized in our project report issued January 2005 and covering the period August 23, 1998-October 23, 2004. An accompanying CD contained electronic copies of all the papers and reports. This report focuses on results of a two-year sub-task to update an environmental assessment of acute marine impacts resulting from direct ocean sequestration. The approach is based on the work of Auerbach et al. [6] and Caulfield et al. [20] to assess mortality to zooplankton, but uses updated information concerning bioassays, an updated modeling approach and three modified injection scenarios: a point release of negatively buoyant solid CO{sub 2} hydrate particles from a moving ship; a long, bottom-mounted diffuser discharging buoyant liquid CO{sub 2} droplets; and a stationary point release of hydrate particles forming a sinking plume. Results suggest that in particular the first two discharge modes could be

  19. Carbon sequestration in sinks. An overview of potential and costs

    Energy Technology Data Exchange (ETDEWEB)

    Kolshus, Hans H.

    2001-07-01

    Prior to the resumed climate negotiations in Bonn in July this year, it was thought that an agreement on the unresolved crunch issues of the Kyoto Protocol was unrealistic. This was primarily due to the US withdrawal from the Kyoto Protocol, and the failure of the previous climate negotiations that stranded mainly because of disagreement on the inclusion of land use, land-use change, and forestry (LULUCF) activities. The LULUCF issue is controversial in the climate negotiations, but an agreement has now been reached. This paper explores the possible contribution of LULUCF activities in promoting greenhouse gas emissions reductions. A survey on the literature of the potential and cost of LULUCF activities is therefore central. Analysis of the recent climate negotiations is also important. It is clear that the potential for carbon sequestration is large, but there are large variations in the estimates as factors such as land availability and the rate of carbon uptake complicate the calculations. There are also variations in the costs estimates, and economic analysis of LULUCF projects are not easily compared as no standard method of analysis has emerged and come into wide use. Despite the difficulties in comparing the costs of carbon sequestration, it is clear that it is a relatively inexpensive measure. Even though the potential for carbon sequestration is large, its role in reducing emissions of greenhouse gases (GHG) is limited by the Kyoto Protocol. The recent climate negotiations in Bonn and Marrakesh have specified the modalities, rules and guidelines relating to LULUCF activities. One of the main outcomes is that Japan, Canada and Russia are allowed large inclusions of sinks in their GHG emission accounts. (author)

  20. Carbon sequestration in sinks. An overview of potential and costs

    International Nuclear Information System (INIS)

    Kolshus, Hans H.

    2001-01-01

    Prior to the resumed climate negotiations in Bonn in July this year, it was thought that an agreement on the unresolved crunch issues of the Kyoto Protocol was unrealistic. This was primarily due to the US withdrawal from the Kyoto Protocol, and the failure of the previous climate negotiations that stranded mainly because of disagreement on the inclusion of land use, land-use change, and forestry (LULUCF) activities. The LULUCF issue is controversial in the climate negotiations, but an agreement has now been reached. This paper explores the possible contribution of LULUCF activities in promoting greenhouse gas emissions reductions. A survey on the literature of the potential and cost of LULUCF activities is therefore central. Analysis of the recent climate negotiations is also important. It is clear that the potential for carbon sequestration is large, but there are large variations in the estimates as factors such as land availability and the rate of carbon uptake complicate the calculations. There are also variations in the costs estimates, and economic analysis of LULUCF projects are not easily compared as no standard method of analysis has emerged and come into wide use. Despite the difficulties in comparing the costs of carbon sequestration, it is clear that it is a relatively inexpensive measure. Even though the potential for carbon sequestration is large, its role in reducing emissions of greenhouse gases (GHG) is limited by the Kyoto Protocol. The recent climate negotiations in Bonn and Marrakesh have specified the modalities, rules and guidelines relating to LULUCF activities. One of the main outcomes is that Japan, Canada and Russia are allowed large inclusions of sinks in their GHG emission accounts. (author)

  1. Sequestration of organochlorine pesticides in soils of distinct organic carbon content

    International Nuclear Information System (INIS)

    Zhang Na; Yang Yu; Tao Shu; Liu Yan; Shi Kelu

    2011-01-01

    In the present study, five soil samples with organic carbon contents ranging from 0.23% to 7.1% and aged with technical dichlorodiphenyltrichloroethane (DDT) and hexachlorocyclohexane (HCH) for 15 months were incubated in a sealed chamber to investigate the dynamic changes of the OCP residues. The residues in the soils decreased over the incubation period and finally reached a plateau. Regression analysis showed that degradable fractions of OCPs were negatively correlated with soil organic carbon (SOC) except for α-HCH, while no correlation was found between degradation rate and SOC, which demonstrated that SOC content determines the OCP sequestration fraction in soil. Analysis of the ratio of DDT and its primary metabolites showed that, since it depends on differential sequestration among them, magnitude of (p,p'-DDE + p,p'-DDD)/p,p'-DDT is not a reliable criterion for the identification of new DDT sources. - Research highlights: → Soil organic carbon content determines the OCP sequestration fraction in soil. → Magnitude of (p,p'-DDE + p,p'-DDD)/p,p'-DDT is not a reliable criterion for the identification of new DDT sources. → The more hydrophobic compounds have relatively higher sequestration fractions in soils with SOC contents >2%. → DDD may have higher sorption by soil organic matter than DDE. - The effect of soil organic matter on the sequestration of organochlorine pesticides (HCHs and DDTs) in soils was investigated in an innovative microcosm chamber.

  2. A concerted action of a paired-type homeobox gene, aristaless, and a homolog of Hox11/tlx homeobox gene, clawless, is essential for the distal tip development of the Drosophila leg.

    Science.gov (United States)

    Kojima, Tetsuya; Tsuji, Takuya; Saigo, Kaoru

    2005-03-15

    The subdivision of the developing field by region-specific expression of genes encoding transcription factors is an essential step during appendage development in arthropod and vertebrates. In Drosophila leg development, the distal-most region (pretarsus) is specified by the expression of homeobox genes, aristaless and Lim1, and its immediate neighbor (distal tarsus) is specified by the expression of a pair of Bar homeobox genes. Here, we show that one additional gene, clawless, which is a homolog of vertebrate Hox11/tlx homeobox gene family and formerly known as C15, is specifically expressed in the pretarsus and cooperatively acts with aristaless to repress Bar and possibly to activate Lim1. Similar to aristaless, the maximal expression of clawless requires Lim1 and its co-factor, Chip. Bar attenuates aristaless and clawless expression through Lim1 repression. Aristaless and Clawless proteins form a complex capable of binding to specific DNA targets, which cannot be well recognized solely by Aristaless or Clawless.

  3. Soil organic carbon sequestration and tillage systems in Mediterranean environments

    Science.gov (United States)

    Francaviglia, Rosa; Di Bene, Claudia; Marchetti, Alessandro; Farina, Roberta

    2016-04-01

    Soil carbon sequestration is of special interest in Mediterranean areas, where rainfed cropping systems are prevalent, inputs of organic matter to soils are low and mostly rely on crop residues, while losses are high due to climatic and anthropic factors such as intensive and non-conservative farming practices. The adoption of reduced or no tillage systems, characterized by a lower soil disturbance in comparison with conventional tillage, has proved to be positively effective on soil organic carbon (SOC) conservation and other physical and chemical processes, parameters or functions, e.g. erosion, compaction, ion retention and exchange, buffering capacity, water retention and aggregate stability. Moreover, soil biological and biochemical processes are usually improved by the reduction of tillage intensity. The work deals with some results available in the scientific literature, and related to field experiment on arable crops performed in Italy, Greece, Morocco and Spain. Data were organized in a dataset containing the main environmental parameters (altitude, temperature, rainfall), soil tillage system information (conventional, minimum and no-tillage), soil parameters (bulk density, pH, particle size distribution and texture), crop type, rotation, management and length of the experiment in years, initial SOCi and final SOCf stocks. Sampling sites are located between 33° 00' and 43° 32' latitude N, 2-860 m a.s.l., with mean annual temperature and rainfall in the range 10.9-19.6° C and 355-900 mm. SOC data, expressed in t C ha-1, have been evaluated both in terms of Carbon Sequestration Rate, given by [(SOCf-SOCi)/length in years], and as percentage change in comparison with the initial value [(SOCf-SOCi)/SOCi*100]. Data variability due to the different environmental, soil and crop management conditions that influence SOC sequestration and losses will be examined.

  4. Mineral CO2 sequestration by steel slag carbonation

    International Nuclear Information System (INIS)

    Huijgen, W.J.J.; Comans, R.N.J.; Witkamp, G.J.

    2005-12-01

    Mineral CO2 sequestration, i.e., carbonation of alkaline silicate Ca/Mg minerals, analogous to natural weathering processes, is a possible technology for the reduction of carbon dioxide emissions to the atmosphere. In this paper, alkaline Ca-rich industrial residues are presented as a possible feedstock for mineral CO2 sequestration. These materials are cheap, available near large point sources of CO2, and tend to react relatively rapidly with CO2 due to their chemical instability. Ground steel slag was carbonated in aqueous suspensions to study its reaction mechanisms. Process variables, such as particle size, temperature, carbon dioxide pressure, and reaction time, were systematically varied, and their influence on the carbonation rate was investigated. The maximum carbonation degree reached was 74% of the Ca content in 30 min at 19 bar pressure, 100C, and a particle size of <38 μm. The two must important factors determining the reaction rare are particle size (<2 mm to <38 μm) and reaction temperature (25-225C). The carbonation reaction was found to occur in two steps: (1) leaching of calcium from the steel slag particles into the solution; (2) precipitation of calcite on the surface of these particles. The first step and, more in particular, the diffusion of calcium through the solid matrix toward the surface appeared to be the rate-determining reaction step, The Ca diffusion was found to be hindered by the formation of a CaCO3-coating and a Ca-depleted silicate zona during the carbonation process. Research on further enhancement of the reaction rate, which would contribute to the development of a cost-effective CO2-sequestration process, should focus particularly on this mechanism

  5. Southeast Regional Carbon Sequestration Partnership (SECARB)

    Energy Technology Data Exchange (ETDEWEB)

    Kenneth J. Nemeth

    2005-09-30

    The Southeast Regional Carbon Sequestration Partnership (SECARB) is a diverse partnership covering eleven states involving the Southern States Energy Board (SSEB) an interstate compact; regulatory agencies and/or geological surveys from member states; the Electric Power Research Institute (EPRI); academic institutions; a Native American enterprise; and multiple entities from the private sector. Figure 1 shows the team structure for the partnership. In addition to the Technical Team, the Technology Coalition, an alliance of auxiliary participants, in the project lends yet more strength and support to the project. The Technology Coalition, with its diverse representation of various sectors, is integral to the technical information transfer, outreach, and public perception activities of the partnership. The Technology Coalition members, shown in Figure 2, also provide a breadth of knowledge and capabilities in the multiplicity of technologies needed to assure a successful outcome to the project and serve as an extremely important asset to the partnership. The eleven states comprising the multi-state region are: Alabama; Arkansas; Florida; Georgia; Louisiana; Mississippi; North Carolina; South Carolina; Tennessee; Texas; and Virginia. The states making up the SECARB area are illustrated in Figure 3. The primary objectives of the SECARB project include: (1) Supporting the U.S. Department of Energy (DOE) Carbon Sequestration Program by promoting the development of a framework and infrastructure necessary for the validation and deployment of carbon sequestration technologies. This requires the development of relevant data to reduce the uncertainties and risks that are barriers to sequestration, especially for geologic storage in the SECARB region. Information and knowledge are the keys to establishing a regional carbon dioxide (CO{sub 2}) storage industry with public acceptance. (2) Supporting the President's Global Climate Change Initiative with the goal of reducing

  6. Carbon sequestration potential of soils in southeast Germany derived from stable soil organic carbon saturation.

    Science.gov (United States)

    Wiesmeier, Martin; Hübner, Rico; Spörlein, Peter; Geuß, Uwe; Hangen, Edzard; Reischl, Arthur; Schilling, Bernd; von Lützow, Margit; Kögel-Knabner, Ingrid

    2014-02-01

    Sequestration of atmospheric carbon (C) in soils through improved management of forest and agricultural land is considered to have high potential for global CO2 mitigation. However, the potential of soils to sequester soil organic carbon (SOC) in a stable form, which is limited by the stabilization of SOC against microbial mineralization, is largely unknown. In this study, we estimated the C sequestration potential of soils in southeast Germany by calculating the potential SOC saturation of silt and clay particles according to Hassink [Plant and Soil 191 (1997) 77] on the basis of 516 soil profiles. The determination of the current SOC content of silt and clay fractions for major soil units and land uses allowed an estimation of the C saturation deficit corresponding to the long-term C sequestration potential. The results showed that cropland soils have a low level of C saturation of around 50% and could store considerable amounts of additional SOC. A relatively high C sequestration potential was also determined for grassland soils. In contrast, forest soils had a low C sequestration potential as they were almost C saturated. A high proportion of sites with a high degree of apparent oversaturation revealed that in acidic, coarse-textured soils the relation to silt and clay is not suitable to estimate the stable C saturation. A strong correlation of the C saturation deficit with temperature and precipitation allowed a spatial estimation of the C sequestration potential for Bavaria. In total, about 395 Mt CO2 -equivalents could theoretically be stored in A horizons of cultivated soils - four times the annual emission of greenhouse gases in Bavaria. Although achieving the entire estimated C storage capacity is unrealistic, improved management of cultivated land could contribute significantly to CO2 mitigation. Moreover, increasing SOC stocks have additional benefits with respect to enhanced soil fertility and agricultural productivity. © 2013 John Wiley & Sons Ltd.

  7. Lead sequestration and species redistribution during soil organic matter decomposition

    Science.gov (United States)

    Schroth, A.W.; Bostick, B.C.; Kaste, J.M.; Friedland, A.J.

    2008-01-01

    The turnover of soil organic matter (SOM) maintains a dynamic chemical environment in the forest floor that can impact metal speciation on relatively short timescales. Here we measure the speciation of Pb in controlled and natural organic (O) soil horizons to quantify changes in metal partitioning during SOM decomposition in different forest litters. We provide a link between the sequestration of pollutant Pb in O-horizons, estimated by forest floor Pb inventories, and speciation using synchrotron-based X-ray fluorescence and X-ray absorption spectroscopy. When Pb was introduced to fresh forest Oi samples, it adsorbed primarily to SOM surfaces, but as decomposition progressed over two years in controlled experiments, up to 60% of the Pb was redistributed to pedogenic birnessite and ferrihydrite surfaces. In addition, a significant fraction of pollutant Pb in natural soil profiles was associated with similar mineral phases (???20-35%) and SOM (???65-80%). Conifer forests have at least 2-fold higher Pb burdens in the forest floor relative to deciduous forests due to more efficient atmospheric scavenging and slower organic matter turnover. We demonstrate that pedogenic minerals play an important role in surface soil Pb sequestration, particularly in deciduous forests, and should be considered in any assessment of pollutant Pb mobility. ?? 2008 American Chemical Society.

  8. Decarbonization and sequestration for mitigating global warming

    International Nuclear Information System (INIS)

    Steinberg, M.

    2000-01-01

    Mitigating the global warming greenhouse effect while maintaining a fossil fuel economy, requires improving efficiency of utilization of fossil fuels, use of high hydrogen content fossil fuels, decarbonization of fossil fuels, and sequestering of carbon and CO 2 applied to all the sectors of the economy, electric power generation, transportation, and industrial, and domestic power and heat generation. Decarbonization means removal of carbon as C or CO 2 either before or after fossil fuel combustion and sequestration means disposal of the recovered C or CO 2 including its utilization. Removal and recovery of CO 2 from power generation plants and sequestration in the ocean represents one possibility of making a major impact on reducing CO 2 emissions to the atmosphere. This paper will briefly review the progress made in ocean disposal and present some alternative schemes. (author)

  9. INTERNATIONAL COLLABORATION ON CO2 SEQUESTRATION

    Energy Technology Data Exchange (ETDEWEB)

    H.J. Herzog; E.E. Adams

    2000-08-23

    The specific objective of our project on CO{sub 2} ocean sequestration is to investigate its technical feasibility and to improve the understanding of any associated environmental impacts. Our ultimate goal is to minimize any impacts associated with the eventual use of ocean carbon sequestration to reduce greenhouse gas concentrations in the atmosphere. The project will continue through March 31, 2002, with a field experiment to take place in the summer of 2001 off the Kona Coast of Hawaii. At GHGT-4 in Interlaken, we presented a paper detailing our plans. The purpose of this paper is to present an update on our progress to date and our plans to complete the project. The co-authors of this paper are members of the project's Technical Committee, which has been formed to supervise the technical aspects and execution of this project.

  10. Marine sequestration of carbon in bacterial metabolites.

    Science.gov (United States)

    Lechtenfeld, Oliver J; Hertkorn, Norbert; Shen, Yuan; Witt, Matthias; Benner, Ronald

    2015-03-31

    Linking microbial metabolomics and carbon sequestration in the ocean via refractory organic molecules has been hampered by the chemical complexity of dissolved organic matter (DOM). Here, using bioassay experiments and ultra-high resolution metabolic profiling, we demonstrate that marine bacteria rapidly utilize simple organic molecules and produce exometabolites of remarkable molecular and structural diversity. Bacterial DOM is similar in chemical composition and structural complexity to naturally occurring DOM in sea water. An appreciable fraction of bacterial DOM has molecular and structural properties that are consistent with those of refractory molecules in the ocean, indicating a dominant role for bacteria in shaping the refractory nature of marine DOM. The rapid production of chemically complex and persistent molecules from simple biochemicals demonstrates a positive feedback between primary production and refractory DOM formation. It appears that carbon sequestration in diverse and structurally complex dissolved molecules that persist in the environment is largely driven by bacteria.

  11. Intralobar pulmonary sequestration: a case report

    International Nuclear Information System (INIS)

    Nacif, Marcelo Souto; Miranda, Bruno Jose de Pinho; Caramel, Juliana Mauro; Jauregui, Gustavo Federico; Santos, Alair Augusto Sarmet Moreira Damas dos

    2001-01-01

    We report the case of a 49-year-old patient with repeated lung infections. Chest x-rays showed a mass in the posterior basal segment of the right lung. Angio tomography and 3D reconstructions showed a blood supply coming from the descending aorta. The analysis of the surgical specimen confirmed the occurrence of intra lobar pulmonary sequestration with a cavitation filled with mucus. (author)

  12. Integrating Steel Production with Mineral Carbon Sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Klaus Lackner; Paul Doby; Tuncel Yegulalp; Samuel Krevor; Christopher Graves

    2008-05-01

    The objectives of the project were (i) to develop a combination iron oxide production and carbon sequestration plant that will use serpentine ores as the source of iron and the extraction tailings as the storage element for CO2 disposal, (ii) the identification of locations within the US where this process may be implemented and (iii) to create a standardized process to characterize the serpentine deposits in terms of carbon disposal capacity and iron and steel production capacity. The first objective was not accomplished. The research failed to identify a technique to accelerate direct aqueous mineral carbonation, the limiting step in the integration of steel production and carbon sequestration. Objective (ii) was accomplished. It was found that the sequestration potential of the ultramafic resource surfaces in the US and Puerto Rico is approximately 4,647 Gt of CO2 or over 500 years of current US production of CO2. Lastly, a computer model was developed to investigate the impact of various system parameters (recoveries and efficiencies and capacities of different system components) and serpentinite quality as well as incorporation of CO2 from sources outside the steel industry.

  13. Carbon sequestration by Australian tidal marshes

    KAUST Repository

    Macreadie, Peter I.

    2017-03-10

    Australia\\'s tidal marshes have suffered significant losses but their recently recognised importance in CO2 sequestration is creating opportunities for their protection and restoration. We compiled all available data on soil organic carbon (OC) storage in Australia\\'s tidal marshes (323 cores). OC stocks in the surface 1 m averaged 165.41 (SE 6.96) Mg OC ha-1 (range 14-963 Mg OC ha-1). The mean OC accumulation rate was 0.55 ± 0.02 Mg OC ha-1 yr-1. Geomorphology was the most important predictor of OC stocks, with fluvial sites having twice the stock of OC as seaward sites. Australia\\'s 1.4 million hectares of tidal marshes contain an estimated 212 million tonnes of OC in the surface 1 m, with a potential CO2-equivalent value of $USD7.19 billion. Annual sequestration is 0.75 Tg OC yr-1, with a CO2-equivalent value of $USD28.02 million per annum. This study provides the most comprehensive estimates of tidal marsh blue carbon in Australia, and illustrates their importance in climate change mitigation and adaptation, acting as CO2 sinks and buffering the impacts of rising sea level. We outline potential further development of carbon offset schemes to restore the sequestration capacity and other ecosystem services provided by Australia tidal marshes.

  14. Possible impacts of sequestration on federal research

    Science.gov (United States)

    Showstack, Randy

    2012-10-01

    U.S. federal research and development (R&D) activities could be reduced by up to $57.5 billion, or 8.4%, through 2017 because of automatic reductions in U.S. federal funding, referred to as sequestration, that are set to begin in January 2013 under the 2011 Budget Control Act. That is according to a 27 September analysis by the American Association for the Advancement of Science (AAAS). If defense R&D is pulled from the equation, sequestration could cut nondefense R&D by $50.8 billion, or 17.2% through that same time period, according to AAAS. Under an equal allocation scenario, the Department of Energy could lose $4.6 billion for R&D over that time period, the National Science Foundation could lose $2.1 billion for R&D, and NASA could lose $3.5 billion, according to the analysis, which also notes that states could be hit hard by decreased federal R&D spending. Congressional leaders currently are looking into how to avoid sequestration. For more information, see http://www.aaas.org/news/releases/2012/0928sequester.shtml.

  15. Msx homeobox genes critically regulate embryo implantation by controlling paracrine signaling between uterine stroma and epithelium.

    Directory of Open Access Journals (Sweden)

    Shanmugasundaram Nallasamy

    Full Text Available The mammalian Msx homeobox genes, Msx1 and Msx2, encode transcription factors that control organogenesis and tissue interactions during embryonic development. We observed overlapping expression of these factors in uterine epithelial and stromal compartments of pregnant mice prior to embryo implantation. Conditional ablation of both Msx1 and Msx2 in the uterus resulted in female infertility due to a failure in implantation. In these mutant mice (Msx1/2(d/d, the uterine epithelium exhibited persistent proliferative activity and failed to attach to the embryos. Gene expression profiling of uterine epithelium and stroma of Msx1/2(d/d mice revealed an elevated expression of several members of the Wnt gene family in the preimplantation uterus. Increased canonical Wnt signaling in the stromal cells activated β-catenin, stimulating the production of a subset of fibroblast growth factors (FGFs in these cells. The secreted FGFs acted in a paracrine manner via the FGF receptors in the epithelium to promote epithelial proliferation, thereby preventing differentiation of this tissue and creating a non-receptive uterus refractory to implantation. Collectively, these findings delineate a unique signaling network, involving Msx1/2, Wnts, and FGFs, which operate in the uterus at the time of implantation to control the mesenchymal-epithelial dialogue critical for successful establishment of pregnancy.

  16. A new role for muscle segment homeobox genes in mammalian embryonic diapause

    Science.gov (United States)

    Cha, Jeeyeon; Sun, Xiaofei; Bartos, Amanda; Fenelon, Jane; Lefèvre, Pavine; Daikoku, Takiko; Shaw, Geoff; Maxson, Robert; Murphy, Bruce D.; Renfree, Marilyn B.; Dey, Sudhansu K.

    2013-01-01

    Mammalian embryonic diapause is a phenomenon defined by the temporary arrest in blastocyst growth and metabolic activity within the uterus which synchronously becomes quiescent to blastocyst activation and implantation. This reproductive strategy temporally uncouples conception from parturition until environmental or maternal conditions are favourable for the survival of the mother and newborn. The underlying molecular mechanism by which the uterus and embryo temporarily achieve quiescence, maintain blastocyst survival and then resume blastocyst activation with subsequent implantation remains unknown. Here, we show that uterine expression of Msx1 or Msx2, members of an ancient, highly conserved homeobox gene family, persists in three unrelated mammalian species during diapause, followed by rapid downregulation with blastocyst activation and implantation. Mice with uterine inactivation of Msx1 and Msx2 fail to achieve diapause and reactivation. Remarkably, the North American mink and Australian tammar wallaby share similar expression patterns of MSX1 or MSX2 as in mice—it persists during diapause and is rapidly downregulated upon blastocyst activation and implantation. Evidence from mouse studies suggests that the effects of Msx genes in diapause are mediated through Wnt5a, a known transcriptional target of uterine Msx. These studies provide strong evidence that the Msx gene family constitutes a common conserved molecular mediator in the uterus during embryonic diapause to improve female reproductive fitness. PMID:23615030

  17. Msx homeobox genes critically regulate embryo implantation by controlling paracrine signaling between uterine stroma and epithelium.

    Science.gov (United States)

    Nallasamy, Shanmugasundaram; Li, Quanxi; Bagchi, Milan K; Bagchi, Indrani C

    2012-01-01

    The mammalian Msx homeobox genes, Msx1 and Msx2, encode transcription factors that control organogenesis and tissue interactions during embryonic development. We observed overlapping expression of these factors in uterine epithelial and stromal compartments of pregnant mice prior to embryo implantation. Conditional ablation of both Msx1 and Msx2 in the uterus resulted in female infertility due to a failure in implantation. In these mutant mice (Msx1/2(d/d)), the uterine epithelium exhibited persistent proliferative activity and failed to attach to the embryos. Gene expression profiling of uterine epithelium and stroma of Msx1/2(d/d) mice revealed an elevated expression of several members of the Wnt gene family in the preimplantation uterus. Increased canonical Wnt signaling in the stromal cells activated β-catenin, stimulating the production of a subset of fibroblast growth factors (FGFs) in these cells. The secreted FGFs acted in a paracrine manner via the FGF receptors in the epithelium to promote epithelial proliferation, thereby preventing differentiation of this tissue and creating a non-receptive uterus refractory to implantation. Collectively, these findings delineate a unique signaling network, involving Msx1/2, Wnts, and FGFs, which operate in the uterus at the time of implantation to control the mesenchymal-epithelial dialogue critical for successful establishment of pregnancy.

  18. Conditional deletion of Msx homeobox genes in the uterus inhibits blastocyst implantation by altering uterine receptivity.

    Science.gov (United States)

    Daikoku, Takiko; Cha, Jeeyeon; Sun, Xiaofei; Tranguch, Susanne; Xie, Huirong; Fujita, Tomoko; Hirota, Yasushi; Lydon, John; DeMayo, Francesco; Maxson, Robert; Dey, Sudhansu K

    2011-12-13

    An effective bidirectional communication between an implantation-competent blastocyst and the receptive uterus is a prerequisite for mammalian reproduction. The blastocyst will implant only when this molecular cross-talk is established. Here we show that the muscle segment homeobox gene (Msh) family members Msx1 and Msx2, which are two highly conserved genes critical for epithelial-mesenchymal interactions during development, also play crucial roles in embryo implantation. Loss of Msx1/Msx2 expression correlates with altered uterine luminal epithelial cell polarity and affects E-cadherin/β-catenin complex formation through the control of Wnt5a expression. Application of Wnt5a in vitro compromised blastocyst invasion and trophoblast outgrowth on cultured uterine epithelial cells. The finding that Msx1/Msx2 genes are critical for conferring uterine receptivity and readiness to implantation could have clinical significance, because compromised uterine receptivity is a major cause of pregnancy failure in IVF programs. Copyright © 2011 Elsevier Inc. All rights reserved.

  19. The murine homeobox gene Msx-3 shows highly restricted expression in the developing neural tube.

    Science.gov (United States)

    Shimeld, S M; McKay, I J; Sharpe, P T

    1996-04-01

    The mouse homeobox-genes Msx-1 and Msx-2 are expressed in several areas of the developing embryo, including the neural tube, neural crest, facial processes and limb buds. Here we report the characterisation of a third mouse Msx gene, which we designate Msx-3. The embryonic expression of Msx-3 was found to differ from that of Msx-1 and -2 in that it was confined to the dorsal neural tube. In embryos with 5-8 somites a segmental pattern of expression was observed in the hindbrain, with rhombomeres 3 and 5 lacking Msx-3 while other rhombomeres expressed Msx-3. This pattern was transient, however, such that in embryos with 18 or more somites expression was continuous throughout the dorsal hindbrain and anterior dorsal spinal cord. Differentiation of dorsal cell types in the neural tube can be induced by addition of members of the Tgf-beta family. Additionally, Msx-1 and -2 have been shown to be activated by addition of the Tgf-beta family member Bmp-4. To determine if Bmp-4 could activate Msx-3, we incubated embryonic hindbrain explants with exogenous Bmp-4. The dorsal expression of Msx-3 was seen to expand into more ventral regions of the neurectoderm in Bmp-4-treated cultures, implying that Bmp-4 may be able to mimic an in vivo signal that induces Msx-3.

  20. Homeobox genes Msx-1 and Msx-2 are associated with induction and growth of skin appendages.

    Science.gov (United States)

    Noveen, A; Jiang, T X; Ting-Berreth, S A; Chuong, C M

    1995-05-01

    The mechanism involved in the morphogenesis of skin appendages is a fundamental issue underlying the development and healing of skin. To identify molecules involved in the induction and growth of skin appendages, we studied the expression of two homeobox genes, Msx-1 and Msx-2, during embryonic chicken skin development. We found that i) both Msx-1 and Msx-2 are early markers of epithelial placodes for skin appendages; ii) both Msx-1 and Msx-2 are expressed in the growing feather bud epithelia but not in the interbud epithelia; iii) although mostly overlapping, there are differences between the expression of the two Msx genes, Msx-1 being expressed more toward the anterior whereas Msx-2 is expressed more toward the distal feather bud; iv) there is no body-position-specific expression pattern as was observed for members of the Hox A-D clusters; v) in the feather follicle, Msx-1 and 2 are expressed in the collar and barb ridge epithelia, both regions of continuous cell proliferation; vi) when feather-bud growth was inhibited by forskolin, an activator of adenylyl cyclase, the expression of both genes was reduced. These results showed that Msx genes are specifically expressed in epithelial domains destined to become skin appendages. Its function in skin-appendage morphogenesis may be twofold, first in making epithelial cells competent to become skin appendages and, second, in making epithelial cells maintain their potential for continuous growth.

  1. A new role for muscle segment homeobox genes in mammalian embryonic diapause.

    Science.gov (United States)

    Cha, Jeeyeon; Sun, Xiaofei; Bartos, Amanda; Fenelon, Jane; Lefèvre, Pavine; Daikoku, Takiko; Shaw, Geoff; Maxson, Robert; Murphy, Bruce D; Renfree, Marilyn B; Dey, Sudhansu K

    2013-04-24

    Mammalian embryonic diapause is a phenomenon defined by the temporary arrest in blastocyst growth and metabolic activity within the uterus which synchronously becomes quiescent to blastocyst activation and implantation. This reproductive strategy temporally uncouples conception from parturition until environmental or maternal conditions are favourable for the survival of the mother and newborn. The underlying molecular mechanism by which the uterus and embryo temporarily achieve quiescence, maintain blastocyst survival and then resume blastocyst activation with subsequent implantation remains unknown. Here, we show that uterine expression of Msx1 or Msx2, members of an ancient, highly conserved homeobox gene family, persists in three unrelated mammalian species during diapause, followed by rapid downregulation with blastocyst activation and implantation. Mice with uterine inactivation of Msx1 and Msx2 fail to achieve diapause and reactivation. Remarkably, the North American mink and Australian tammar wallaby share similar expression patterns of MSX1 or MSX2 as in mice-it persists during diapause and is rapidly downregulated upon blastocyst activation and implantation. Evidence from mouse studies suggests that the effects of Msx genes in diapause are mediated through Wnt5a, a known transcriptional target of uterine Msx. These studies provide strong evidence that the Msx gene family constitutes a common conserved molecular mediator in the uterus during embryonic diapause to improve female reproductive fitness.

  2. Homeobox gene Dlx-2 is implicated in metabolic stress-induced necrosis

    Directory of Open Access Journals (Sweden)

    Lim Sung-Chul

    2011-09-01

    Full Text Available Abstract Background In contrast to tumor-suppressive apoptosis and autophagic cell death, necrosis promotes tumor progression by releasing the pro-inflammatory and tumor-promoting cytokine high mobility group box 1 (HMGB1, and its presence in tumor patients is associated with poor prognosis. Thus, necrosis has important clinical implications in tumor development; however, its molecular mechanism remains poorly understood. Results In the present study, we show that Distal-less 2 (Dlx-2, a homeobox gene of the Dlx family that is involved in embryonic development, is induced in cancer cell lines dependently of reactive oxygen species (ROS in response to glucose deprivation (GD, one of the metabolic stresses occurring in solid tumors. Increased Dlx-2 expression was also detected in the inner regions, which experience metabolic stress, of human tumors and of a multicellular tumor spheroid, an in vitro model of solid tumors. Dlx-2 short hairpin RNA (shRNA inhibited metabolic stress-induced increase in propidium iodide-positive cell population and HMGB1 and lactate dehydrogenase (LDH release, indicating the important role(s of Dlx-2 in metabolic stress-induced necrosis. Dlx-2 shRNA appeared to exert its anti-necrotic effects by preventing metabolic stress-induced increases in mitochondrial ROS, which are responsible for triggering necrosis. Conclusions These results suggest that Dlx-2 may be involved in tumor progression via the regulation of metabolic stress-induced necrosis.

  3. Systematic deletion of homeobox genes in Podospora anserina uncovers their roles in shaping the fruiting body.

    Directory of Open Access Journals (Sweden)

    Evelyne Coppin

    Full Text Available Higher fungi, which comprise ascomycetes and basidiomycetes, play major roles in the biosphere. Their evolutionary success may be due to the extended dikaryotic stage of their life cycle, which is the basis for their scientific name: the Dikarya. Dikaryosis is maintained by similar structures, the clamp in basidiomycetes and the crozier in ascomycetes. Homeodomain transcription factors are required for clamp formation in all basidiomycetes studied. We identified all the homeobox genes in the filamentous ascomycete fungus Podospora anserina and constructed deletion mutants for each of these genes and for a number of gene combinations. Croziers developed normally in these mutants, including those with up to six deleted homeogenes. However, some mutants had defects in maturation of the fruiting body, an effect that could be rescued by providing wild-type maternal hyphae. Analysis of mutants deficient in multiple homeogenes revealed interactions between the genes, suggesting that they operate as a complex network. Similar to their role in animals and plants, homeodomain transcription factors in ascomycetes are involved in shaping multicellular structures.

  4. Systematic deletion of homeobox genes in Podospora anserina uncovers their roles in shaping the fruiting body.

    Science.gov (United States)

    Coppin, Evelyne; Berteaux-Lecellier, Véronique; Bidard, Frédérique; Brun, Sylvain; Ruprich-Robert, Gwenaël; Espagne, Eric; Aït-Benkhali, Jinane; Goarin, Anne; Nesseir, Audrey; Planamente, Sara; Debuchy, Robert; Silar, Philippe

    2012-01-01

    Higher fungi, which comprise ascomycetes and basidiomycetes, play major roles in the biosphere. Their evolutionary success may be due to the extended dikaryotic stage of their life cycle, which is the basis for their scientific name: the Dikarya. Dikaryosis is maintained by similar structures, the clamp in basidiomycetes and the crozier in ascomycetes. Homeodomain transcription factors are required for clamp formation in all basidiomycetes studied. We identified all the homeobox genes in the filamentous ascomycete fungus Podospora anserina and constructed deletion mutants for each of these genes and for a number of gene combinations. Croziers developed normally in these mutants, including those with up to six deleted homeogenes. However, some mutants had defects in maturation of the fruiting body, an effect that could be rescued by providing wild-type maternal hyphae. Analysis of mutants deficient in multiple homeogenes revealed interactions between the genes, suggesting that they operate as a complex network. Similar to their role in animals and plants, homeodomain transcription factors in ascomycetes are involved in shaping multicellular structures.

  5. Two human homeobox genes, c1 and c8: structure analysis and expression in embryonic development

    International Nuclear Information System (INIS)

    Simeone, A.; Mavilio, F.; Acampora, D.

    1987-01-01

    Two human cDNA clones (HHO.c1.95 and HHO.c8.5111) containing a homeobox region have been characterized, and the respective genomic regions have been partially analyzed. Expression of the corresponding genes, termed c1 and c8, was evaluated in different organs and body parts during human embryonic/fetal development. HHO.c1.95 apparently encodes a 217-amino acid protein containing a class I homeodomain that shares 60 out of 61 amino acid residues with the Antennapedia homeodomain of Drosophila melanogaster. HHO.c8.5111 encodes a 153-amino acid protein containing a homeodomains identical to that of the frog AC1 gene. Clones HHO.c1 and HHO.c8 detect by blot-hybridization one and two specific polyadenylylated transcripts, respectively. These are differentially expressed in spinal cord, backbone rudiments, limb buds (or limbs), heart, and skin of human embryos and early fetuses in the 5- to 9-week postfertilization period, thus suggesting that the c1 and c8 genes play a key role in a variety of developmental processes. Together, the results of the embryonic/fetal expression of c1 and c8 and those of two previously analyzed genes (c10 and c13) indicate a coherent pattern of expression of these genes in early human ontogeny

  6. Two human homeobox genes, c1 and c8: structure analysis and expression in embryonic development.

    Science.gov (United States)

    Simeone, A; Mavilio, F; Acampora, D; Giampaolo, A; Faiella, A; Zappavigna, V; D'Esposito, M; Pannese, M; Russo, G; Boncinelli, E

    1987-07-01

    Two human cDNA clones (HHO.c1.95 and HHO.c8.5111) containing a homeobox region have been characterized, and the respective genomic regions have been partially analyzed. Expression of the corresponding genes, termed c1 and c8, was evaluated in different organs and body parts during human embryonic/fetal development. HHO.c1.95 apparently encodes a 217-amino acid protein containing a class I homeodomain that shares 60 out of 61 amino acid residues with the Antennapedia homeodomain of Drosophila melanogaster. HHO.c8.5111 encodes a 153-amino acid protein containing a homeodomain identical to that of the frog AC1 gene. Clones HHO.c1 and HHO.c8 detect by blot-hydridization one and two specific polyadenylylated transcripts, respectively. These are differentially expressed in spinal cord, backbone rudiments, limb buds (or limbs), heart, and skin of human embryos and early fetuses in the 5- to 9-week postfertilization period, thus suggesting that the c1 and c8 genes play a key role in a variety of developmental processes. Together, the results of the embryonic/fetal expression of c1 and c8 and those of two previously analyzed genes (c10 and c13) indicate a coherent pattern of expression of these genes in early human ontogeny.

  7. Carbon storage and sequestration by trees in urban and community areas of the United States

    International Nuclear Information System (INIS)

    Nowak, David J.; Greenfield, Eric J.; Hoehn, Robert E.; Lapoint, Elizabeth

    2013-01-01

    Carbon storage and sequestration by urban trees in the United States was quantified to assess the magnitude and role of urban forests in relation to climate change. Urban tree field data from 28 cities and 6 states were used to determine the average carbon density per unit of tree cover. These data were applied to statewide urban tree cover measurements to determine total urban forest carbon storage and annual sequestration by state and nationally. Urban whole tree carbon storage densities average 7.69 kg C m −2 of tree cover and sequestration densities average 0.28 kg C m −2 of tree cover per year. Total tree carbon storage in U.S. urban areas (c. 2005) is estimated at 643 million tonnes ($50.5 billion value; 95% CI = 597 million and 690 million tonnes) and annual sequestration is estimated at 25.6 million tonnes ($2.0 billion value; 95% CI = 23.7 million to 27.4 million tonnes). -- Highlights: •Total tree carbon storage in U.S. urban areas (c. 2005) is estimated at 643 million tonnes. •Total tree carbon storage in U.S. urban and community areas is estimated at 1.36 billion tonnes. •Net carbon sequestration in U.S. urban areas varies by state and is estimated at 18.9 million tonnes per year. •Overlap between U.S. forest and urban forest carbon estimates is between 247 million and 303 million tonnes. -- Field and tree cover measurements reveal carbon storage and sequestration by trees in U.S. urban and community areas

  8. Options for accounting carbon sequestration in German forests

    Science.gov (United States)

    Krug, Joachim; Koehl, Michael; Riedel, Thomas; Bormann, Kristin; Rueter, Sebastian; Elsasser, Peter

    2009-01-01

    Background The Accra climate change talks held from 21–27 August 2008 in Accra, Ghana, were part of an ongoing series of meetings leading up to the Copenhagen meeting in December 2009. During the meeting a set of options for accounting carbon sequestration in forestry on a post-2012 framework was presented. The options include gross-net and net-net accounting and approaches for establishing baselines. Results This article demonstrates the embedded consequences of Accra Accounting Options for the case study of German national GHG accounting. It presents the most current assessment of sequestration rates by forest management for the period 1990 – 2007, provides an outlook of future emissions and removals (up to the year 2042) as related to three different management scenarios, and shows that implementation of some Accra options may reverse sources to sinks, or sinks to sources. Conclusion The results of the study highlight the importance of elaborating an accounting system that would prioritize the climate convention goals, not national preferences. PMID:19650896

  9. Epigenetic reversion of breast carcinoma phenotype is accompaniedby DNA sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Sandal, Tone; Valyi-Nagy, Klara; Spencer, Virginia A.; Folberg,Robert; Bissell, Mina J.; Maniotis, Andrew J.

    2006-07-19

    The importance of microenvironment and context in regulation of tissue-specific genes is finally well established. DNA exposure to, or sequestration from, nucleases can be used to detect differences in higher order chromatin structure in intact cells without disturbing cellular or tissue architecture. To investigate the relationship between chromatin organization and tumor phenotype, we utilized an established 3-D assay where normal and malignant human breast cells can be easily distinguished by the morphology of the structures they make (acinus-like vs tumor-like, respectively). We show that these phenotypes can be distinguished also by sensitivity to AluI digestion where the malignant cells are resistant to digestion relative to non-malignant cells. Reversion of the T4-2 breast cancer cells by either cAMP analogs, or a phospatidylinositol 3-kinase (P13K) inhibitor not only reverted the phenotype, but also the chromatin sensitivity to AluI. By using different cAMP-analogs, we show that the cAMP-induced phenotypic reversion, polarization, and shift in DNA organization act through a cAMP-dependent-protein-kinase A-coupled signaling pathway. Importantly, inhibitory antibody to fibronectin also reverted the malignant phenotype, polarized the acini, and changed chromatin sequestration. These experiments show not only that modifying the tumor microenvironment can alter the organization of tumor cells but also that architecture of the tissues and the global chromatin organization are coupled and yet highly plastic.

  10. Seagrass restoration enhances "blue carbon" sequestration in coastal waters.

    Science.gov (United States)

    Greiner, Jill T; McGlathery, Karen J; Gunnell, John; McKee, Brent A

    2013-01-01

    Seagrass meadows are highly productive habitats that provide important ecosystem services in the coastal zone, including carbon and nutrient sequestration. Organic carbon in seagrass sediment, known as "blue carbon," accumulates from both in situ production and sedimentation of particulate carbon from the water column. Using a large-scale restoration (>1700 ha) in the Virginia coastal bays as a model system, we evaluated the role of seagrass, Zosteramarina, restoration in carbon storage in sediments of shallow coastal ecosystems. Sediments of replicate seagrass meadows representing different age treatments (as time since seeding: 0, 4, and 10 years), were analyzed for % carbon, % nitrogen, bulk density, organic matter content, and ²¹⁰Pb for dating at 1-cm increments to a depth of 10 cm. Sediment nutrient and organic content, and carbon accumulation rates were higher in 10-year seagrass meadows relative to 4-year and bare sediment. These differences were consistent with higher shoot density in the older meadow. Carbon accumulation rates determined for the 10-year restored seagrass meadows were 36.68 g C m⁻² yr⁻¹. Within 12 years of seeding, the restored seagrass meadows are expected to accumulate carbon at a rate that is comparable to measured ranges in natural seagrass meadows. This the first study to provide evidence of the potential of seagrass habitat restoration to enhance carbon sequestration in the coastal zone.

  11. Influence of land urbanization on carbon sequestration of urban vegetation: A temporal cooperativity analysis in Guangzhou as an example.

    Science.gov (United States)

    Xu, Qian; Dong, Yu-Xiang; Yang, Ren

    2018-04-13

    Land urbanization can affect carbon sequestration. In this study, the relationships between land urbanization and carbon sequestration of urban vegetation were studied for Guangzhou, China. The methodology was based on land use data from Thematic Mapper (TM) imagery, MODIS13Q1 data, and climate data, and the improved Carnegie-Ames-Stanford approach (CASA) model and linear system models were employed. Characteristics such as the amount of expansion, spatial agglomeration, spatial expansion intensity, and spatial growth of built-up land were analyzed, and the influence of land urbanization (built-up land expansion) on carbon sequestration of urban vegetation was elucidated by a temporal sequential cooperativity analysis. The main results were as follows. (1) Land urbanization had a clear influence on carbon sequestration of urban vegetation in Guangzhou, and the proportion and spatial agglomeration of built-up land showed significant negative correlations with this carbon sequestration; the correlation coefficients were -0.443 and -0.537, respectively, in 2014. (2) The spatial expansion intensity and spatial growth of built-up land showed small correlations with carbon sequestration, and the correlations from 2000 to 2005 were relatively larger than those at other times; this was because the built-up land expansion speed was the fastest during this period. (3) The temporal sequential cooperativity analysis revealed that carbon was lost as natural surfaces were transformed to artificial surfaces, and land urbanization effects on carbon sequestration showed no significant temporal lag. Carbon sequestration of urban vegetation in the city could be improved by adding urban green spaces; however, this would likely take some time as the system recovers. Copyright © 2018 Elsevier B.V. All rights reserved.

  12. The Midwest Regional Carbon Sequestration Partnership (MRCSP)

    Energy Technology Data Exchange (ETDEWEB)

    James J. Dooley; Robert Dahowski; Casie Davidson

    2005-12-01

    This final report summarizes the Phase I research conducted by the Midwest regional Carbon Sequestration Partnership (MRCSP). The Phase I effort began in October 2003 and the project period ended on September 31, 2005. The MRCSP is a public/private partnership led by Battelle with the mission of identifying the technical, economic, and social issues associated with implementation of carbon sequestration technologies in its seven state geographic region (Indiana, Kentucky, Maryland, Michigan, Ohio, Pennsylvania, and West Virginia) and identifying viable pathways for their deployment. It is one of seven partnerships that together span most of the U.S. and parts of Canada that comprise the U.S. Department of Energy's (DOE's) Regional Carbon Sequestration Program led by DOE's national Energy Technology Laboratory (NETL). The MRCSP Phase I research was carried out under DOE Cooperative Agreement No. DE-FC26-03NT41981. The total value of Phase I was $3,513,513 of which the DOE share was $2,410,967 or 68.62%. The remainder of the cost share was provided in varying amounts by the rest of the 38 members of MRCSP's Phase I project. The next largest cost sharing participant to DOE in Phase I was the Ohio Coal Development Office within the Ohio Air Quality Development Authority (OCDO). OCDO's contribution was $100,000 and was contributed under Grant Agreement No. CDO/D-02-17. In this report, the MRCSP's research shows that the seven state MRCSP region is a major contributor to the U. S. economy and also to total emissions of CO2, the most significant of the greenhouse gases thought to contribute to global climate change. But, the research has also shown that the region has substantial resources for sequestering carbon, both in deep geological reservoirs (geological sequestration) and through improved agricultural and land management practices (terrestrial sequestration). Geological reservoirs, especially deep saline reservoirs, offer the potential

  13. Sequestration Options for the West Coast States

    Energy Technology Data Exchange (ETDEWEB)

    Myer, Larry

    2006-04-30

    The West Coast Regional Carbon Sequestration Partnership (WESTCARB) is one of seven partnerships that have been established by the U.S. Department of Energy (DOE) to evaluate carbon capture and sequestration (CCS) technologies best suited for different regions of the country. The West Coast Region comprises Arizona, California, Nevada, Oregon, Washington, Alaska, and British Columbia. Led by the California Energy Commission, WESTCARB is a consortium of about 70 organizations, including state natural resource and environmental protection agencies; national laboratories and universities; private companies working on carbon dioxide (CO{sub 2}) capture, transportation, and storage technologies; utilities; oil and gas companies; nonprofit organizations; and policy/governance coordinating organizations. Both terrestrial and geologic sequestration options were evaluated in the Region during the 18-month Phase I project. A centralized Geographic Information System (GIS) database of stationary source, geologic and terrestrial sink data was developed. The GIS layer of source locations was attributed with CO{sub 2} emissions and other data and a spreadsheet was developed to estimate capture costs for the sources in the region. Phase I characterization of regional geological sinks shows that geologic storage opportunities exist in the WESTCARB region in each of the major technology areas: saline formations, oil and gas reservoirs, and coal beds. California offers outstanding sequestration opportunities because of its large capacity and the potential of value-added benefits from enhanced oil recovery (EOR) and enhanced gas recovery. The estimate for storage capacity of saline formations in the ten largest basins in California ranges from about 150 to about 500 Gt of CO{sub 2}, the potential CO{sub 2}-EOR storage was estimated to be 3.4 Gt, and the cumulative production from gas reservoirs suggests a CO{sub 2} storage capacity of 1.7 Gt. A GIS-based method for source

  14. An index-based approach to assessing recalcitrance and soil carbon sequestration potential of engineered black carbons (biochars).

    Science.gov (United States)

    Harvey, Omar R; Kuo, Li-Jung; Zimmerman, Andrew R; Louchouarn, Patrick; Amonette, James E; Herbert, Bruce E

    2012-02-07

    The ability of engineered black carbons (or biochars) to resist abiotic and, or biotic degradation (herein referred to as recalcitrance) is crucial to their successful deployment as a soil carbon sequestration strategy. A new recalcitrance index, the R(50), for assessing biochar quality for carbon sequestration is proposed. The R(50) is based on the relative thermal stability of a given biochar to that of graphite and was developed and evaluated with a variety of biochars (n = 59), and soot-like black carbons. Comparison of R(50), with biochar physicochemical properties and biochar-C mineralization revealed the existence of a quantifiable relationship between R(50) and biochar recalcitrance. As presented here, the R(50) is immediately applicable to pre-land application screening of biochars into Class A (R(50) ≥ 0.70), Class B (0.50 ≤ R(50) carbon sequestration classes. Class A and Class C biochars would have carbon sequestration potential comparable to soot/graphite and uncharred plant biomass, respectively, whereas Class B biochars would have intermediate carbon sequestration potential. We believe that the coupling of the R(50), to an index-based degradation, and an economic model could provide a suitable framework in which to comprehensively assess soil carbon sequestration in biochars.

  15. Integrating science, economics and law into policy: The case of carbon sequestration in climate change policy

    Science.gov (United States)

    Richards, Kenneth

    Carbon sequestration, the extraction and storage of carbon from the atmosphere by biomass, could potentially provide a cost-effective means to reduce net greenhouse gas emissions. The claims on behalf of carbon sequestration may be inadvertently overstated, however. Several key observations emerge from this study. First, although carbon sequestration studies all report results in terms of dollars per ton, the definition of that term varies significantly, meaning that the results of various analyses can not be meaningfully compared. Second, when carbon sequestration is included in an energy-economy model of climate change policy, it appears that carbon sequestration could play a major, if not dominant role in a national carbon emission abatement program, reducing costs of emissions stabilization by as much as 80 percent, saving tens of billions of dollars per year. However, the results are very dependant upon landowners' perceived risk. Studies may also have overstated the potential for carbon sequestration because they have not considered the implementation process. This study demonstrates that three factors will reduce the cost-effectiveness of carbon sequestration. First, the implementation costs associated with measurement and governance of the government-private sector relation are higher than in the case of carbon source control. Second, legal constraints limit the range of instruments that the government can use to induce private landowners to expand their carbon sinks. The government will likely have to pay private parties to expand their sinks, or undertake direct government production. In either case, additional revenues will be required, introducing social costs associated with excess burden. Third, because of the very long time involved in developing carbon sinks (up to several decades) the government may not be able to make credible commitments against exactions of one type or another that would effectively reduce the value of private sector investments

  16. Ocean carbon sequestration by fertilization: An integrated bioeochemical assessment

    Energy Technology Data Exchange (ETDEWEB)

    Gruber, N.; Sarmiento, J.L.; Gnandesikan, A.

    2005-05-31

    Under this grant, the authors investigated a range of issues associated with the proposal to fertilize the ocean with nutrients (such as iron) in order to increase the export of organic matter from the ocean's near surface waters and consequently increase the uptake of CO{sub 2} from the atmosphere. There are several critical scientific questions that have the potential to be make-or-break issues for this proposed carbon sequestration mechanism: (1) If iron is added to the ocean, will export of organic carbon from the surface actually occur? Clearly, if no export occurs, then there will be no sequestration. (2) if iron fertilization does lead to export of organic carbon from the surface of the ocean, how much CO{sub 2} will actually be removed from the atmosphere? Even if carbon is removed from the surface of the ocean, this does not guarantee that there will be significant removal of CO{sub 2} from the atmosphere, since the CO{sub 2} may be supplied by a realignment of dissolved inorganic carbon within the ocean. (3) What is the time scale of any sequestration that occurs? If sequestered CO{sub 2} returns to the atmosphere on a relatively short time scale, iron fertilization will not contribute significantly to slowing the growth of atmospheric CO{sub 2}. (4) Can the magnitude of sequestration be verified? If verification is extremely difficult or impossible, this option is likely to be viewed less favorably. (5) What unintended consequences might there be from fertilizing the ocean with iron? If these are severe enough, they will be a significant impact on policy decisions. Most research on carbon sequestration by fertilization has focused on the first of these issues. Although a number of in situ fertilization experiments have successfully demonstrated that the addition of iron leads to a dramatic increase in ocean productivity, the question of whether this results in enhanced export remains an open one. The primary focus of the research was on the

  17. Intralobar pulmonary sequestration: a masquarader in tuberculosis prevalent population

    International Nuclear Information System (INIS)

    Ashraf, A.; Iqbal, M.

    2009-01-01

    Intra pulmonary sequestration is a rare congenital disorder that is characterized by malformation of pulmonary tissue having no connection to normal tracheobronchial tree and pulmonary arteries. This is a case history of 20 years old man initially misdiagnosed as Tuberculosis and later diagnosis of intra-lobar pulmonary sequestration was confirmed. There are few reports of this rare disorder globally and we are reporting the first case of Intrapulmonary Sequestration in Pakistan. (author)

  18. Analysis of homeobox gene action may reveal novel angiogenic pathways in normal placental vasculature and in clinical pregnancy disorders associated with abnormal placental angiogenesis.

    Directory of Open Access Journals (Sweden)

    Padma eMurthi

    2014-06-01

    Full Text Available Homeobox genes are essential for both the development of the blood and lymphatic vascular systems, as well as for their maintenance in the adult. Homeobox genes comprise an important family of transcription factors, which are characterised by a well conserved DNA binding motif; the homeodomain. The specificity of the homeodomain allows the transcription factor to bind to the promoter regions of batteries of target genes and thereby regulates their expression. Target genes identified for homeodomain proteins have been shown to control fundamental cell processes such as proliferation, differentiation and apoptosis. We and others have reported that homeobox genes are expressed in the placental vasculature, but our knowledge of their downstream target genes is limited. This review highlights the importance of studying the cellular and molecular mechanisms by which homeobox genes and their downstream targets may regulate important vascular cellular processes such as proliferation, migration, and endothelial tube formation, which are essential for placental vasculogenesis and angiogenesis. A better understanding of the molecular targets of homeobox genes may lead to new therapies for aberrant angiogenesis associated with clinically important pregnancy pathologies, including fetal growth restriction and preeclampsia.

  19. Thrombin Production and Human Neutrophil Elastase Sequestration by Modified Cellulosic Dressings and Their Electrokinetic Analysis

    Directory of Open Access Journals (Sweden)

    Nicolette Prevost

    2011-12-01

    Full Text Available Wound healing is a complex series of biochemical and cellular events. Optimally, functional material design addresses the overlapping acute and inflammatory stages of wound healing based on molecular, cellular, and bio-compatibility issues. In this paper the issues addressed are uncontrolled hemostasis and inflammation which can interfere with the orderly flow of wound healing. In this regard, we review the serine proteases thrombin and elastase relative to dressing functionality that improves wound healing and examine the effects of charge in cotton/cellulosic dressing design on thrombin production and elastase sequestration (uptake by the wound dressing. Thrombin is central to the initiation and propagation of coagulation, and elastase is released from neutrophils that can function detrimentally in a stalled inflammatory phase characteristic of chronic wounds. Electrokinetic fiber surface properties of the biomaterials of this study were determined to correlate material charge and polarity with function relative to thrombin production and elastase sequestration. Human neutrophil elastase sequestration was assessed with an assay representative of chronic wound concentration with cotton gauze cross-linked with three types of polycarboxylic acids and one phosphorylation finish; thrombin production, which was assessed in a plasma-based assay via a fluorogenic peptide substrate, was determined for cotton, cotton-grafted chitosan, chitosan, rayon/polyester, and two kaolin-treated materials including a commercial hemorrhage control dressing (QuickClot Combat Gauze. A correlation in thrombin production to zeta potential was found. Two polycarboxylic acid cross linked and a phosphorylated cotton dressing gave high elastase sequestration.

  20. Interactions between carbon sequestration and shade tree diversity in a smallholder coffee cooperative in El Salvador.

    Science.gov (United States)

    Richards, Meryl Breton; Méndez, V Ernesto

    2014-04-01

    Agroforestry systems have substantial potential to conserve native biodiversity and provide ecosystem services. In particular, agroforestry systems have the potential to conserve native tree diversity and sequester carbon for climate change mitigation. However, little research has been conducted on the temporal stability of species diversity and aboveground carbon stocks in these systems or the relation between species diversity and aboveground carbon sequestration. We measured changes in shade-tree diversity and shade-tree carbon stocks in 14 plots of a 35-ha coffee cooperative over 9 years and analyzed relations between species diversity and carbon sequestration. Carbon sequestration was positively correlated with initial species richness of shade trees. Species diversity of shade trees did not change significantly over the study period, but carbon stocks increased due to tree growth. Our results show a potential for carbon sequestration and long-term biodiversity conservation in smallholder coffee agroforestry systems and illustrate the opportunity for synergies between biodiversity conservation and climate change mitigation. © 2013 Society for Conservation Biology.

  1. Homeobox A7 stimulates breast cancer cell proliferation by up-regulating estrogen receptor-alpha

    International Nuclear Information System (INIS)

    Zhang, Yu; Cheng, Jung-Chien; Huang, He-Feng; Leung, Peter C.K.

    2013-01-01

    Highlights: •HOXA7 regulates MCF7 cell proliferation. •HOXA7 up-regulates ERα expression. •HOXA7 mediates estrogen-induced MCF7 cell proliferation. -- Abstract: Breast cancer is the most common hormone-dependent malignancy in women. Homeobox (HOX) transcription factors regulate many cellular functions, including cell migration, proliferation and differentiation. The aberrant expression of HOX genes has been reported to be associated with human reproductive cancers. Estradiol (E2) and its nuclear receptors, estrogen receptor (ER)-alpha and ER-beta, are known to play critical roles in the regulation of breast cancer cell growth. However, an understanding of the potential relationship between HOXA7 and ER in breast cancer cells is limited. In this study, our results demonstrate that knockdown of HOXA7 in MCF7 cells significantly decreased cell proliferation and ERα expression. In addition, HOXA7 knockdown attenuated E2-induced cell proliferation as well as progesterone receptor (PR) expression. The stimulatory effects of E2 on cell proliferation and PR expression were abolished by co-treatment with ICI 182780, a selective ERα antagonist. In contrast, overexpression of HOXA7 significantly stimulated cell proliferation and ERα expression. Moreover, E2-induced cell proliferation, as well as PR expression, was enhanced by the overexpression of HOXA7. Neither knockdown nor overexpression of HOXA7 affected the ER-beta levels. Our results demonstrate a novel mechanistic role for HOXA7 in modulating breast cancer cell proliferation via regulation of ERα expression. This finding contributes to our understanding of the role HOXA7 plays in regulating the proliferation of ER-positive cancer cells

  2. Muscle segment homeobox genes direct embryonic diapause by limiting inflammation in the uterus

    Energy Technology Data Exchange (ETDEWEB)

    Cha, Jeeyeon; Burnum-Johnson, Kristin E.; Bartos, Amanda; Li, Yingju; Baker, Erin Shammel; Tilton, Susan C.; Webb-Robertson, Bobbie-Jo M.; Piehowski, Paul D.; Monroe, Matthew E.; Jegga, Anil; Murata, Shigeo; Hirota, Yasushi; Dey, Sudhansu K.

    2015-06-11

    Embryonic diapause (delayed implantation) is a reproductive strategy widespread in the animal kingdom. Under this condition, embryos at the blastocyst stage become dormant simultaneously with uterine quiescence until environmental or physiological conditions are favorable for the survival of the mother and newborn. Under favorable conditions, activation of the blastocyst and uterus ensues with implantation and progression of pregnancy. Although endocrine factors are known to participate in this process, the underlying molecular mechanism coordinating this phenomenon is not clearly understood. We recently found that uterine muscle segment homeobox (Msx) transcription factors are critical for the initiation and maintenance of delayed implantation in mice. To better understand why Msx genes are critical for delayed implantation, we compared uterine proteomics profiles between littermate floxed (Msx1/Msx2f/f) mice and mice with uterine deletion of Msx genes (Msx1/Msx2d/d) under delayed conditions. In Msx1/Msx2d/d uteri, pathways including protein translation, ubiquitin-proteasome system, inflammation, chaperone-mediated protein folding, and endoplasmic reticulum (ER) stress were enriched, and computational modeling showed intersection of these pathways on inflammatory responses. Indeed, increases in the ubiquitin-proteasome system and inflammation conformed to proteotoxic and ER stress in Msx1/Msx2d/d uteri under delayed conditions. Interestingly, treatment with a proteasome inhibitor bortezomib further exacerbated ER stress in Msx1/Msx2d/d uteri with aggravated inflammatory response, deteriorating rate of blastocyst recovery and failure to sustain delayed implantation. This study highlights a previously unrecognized role for Msx in preventing proteotoxic stress and inflammatory responses to coordinate embryo dormancy and uterine quiescence during embryonic diapause.

  3. Uterine inactivation of muscle segment homeobox (Msx) genes alters epithelial cell junction proteins during embryo implantation.

    Science.gov (United States)

    Sun, Xiaofei; Park, Craig B; Deng, Wenbo; Potter, S Steven; Dey, Sudhansu K

    2016-04-01

    Embryo implantation requires that the uterus differentiate into the receptive state. Failure to attain uterine receptivity will impede blastocyst attachment and result in a compromised pregnancy. The molecular mechanism by which the uterus transitions from the prereceptive to the receptive stage is complex, involving an intricate interplay of various molecules. We recently found that mice with uterine deletion ofMsxgenes (Msx1(d/d)/Msx2(d/d)) are infertile because of implantation failure associated with heightened apicobasal polarity of luminal epithelial cells during the receptive period. However, information on Msx's roles in regulating epithelial polarity remains limited. To gain further insight, we analyzed cell-type-specific gene expression by RNA sequencing of separated luminal epithelial and stromal cells by laser capture microdissection fromMsx1(d/d)/Msx2(d/d)and floxed mouse uteri on d 4 of pseudopregnancy. We found that claudin-1, a tight junction protein, and small proline-rich (Sprr2) protein, a major component of cornified envelopes in keratinized epidermis, were substantially up-regulated inMsx1(d/d)/Msx2(d/d)uterine epithelia. These factors also exhibited unique epithelial expression patterns at the implantation chamber (crypt) inMsx1(f/f)/Msx2(f/f)females; the patterns were lost inMsx1(d/d)/Msx2(d/d)epithelia on d 5, suggesting important roles during implantation. The results suggest thatMsxgenes play important roles during uterine receptivity including modulation of epithelial junctional activity.-Sun, X., Park, C. B., Deng, W., Potter, S. S., Dey, S. K. Uterine inactivation of muscle segment homeobox (Msx) genes alters epithelial cell junction proteins during embryo implantation. © FASEB.

  4. Correlation of expression of BP1, a homeobox gene, with estrogen receptor status in breast cancer

    International Nuclear Information System (INIS)

    Fu, Sidney W; Poola, Indira; Stephan, Dietrich A; Berg, Patricia E; Schwartz, Arnold; Stevenson, Holly; Pinzone, Joseph J; Davenport, Gregory J; Orenstein, Jan M; Gutierrez, Peter; Simmens, Samuel J; Abraham, Jessy

    2003-01-01

    BP1 is a novel homeobox gene cloned in our laboratory. Our previous studies in leukemia demonstrated that BP1 has oncogenic properties, including as a modulator of cell survival. Here BP1 expression was examined in breast cancer, and the relationship between BP1 expression and clinicopathological data was determined. Total RNA was isolated from cell lines, tumors, and matched normal adjacent tissue or tissue from autopsy. Reverse transcription polymerase chain reaction was performed to evaluate BP1 expression. Statistical analysis was accomplished with SAS. Analysis of 46 invasive ductal breast tumors demonstrated BP1 expression in 80% of them, compared with a lack of expression in six normal breast tissues and low-level expression in one normal breast tissue. Remarkably, 100% of tumors that were negative for the estrogen receptor (ER) were BP1-positive, whereas 73% of ER-positive tumors expressed BP1 (P = 0.03). BP1 expression was also associated with race: 89% of the tumors of African American women were BP1-positive, whereas 57% of those from Caucasian women expressed BP1 (P = 0.04). However, there was no significant difference in BP1 expression between grades I, II, and III tumors. Interestingly, BP1 mRNA expression was correlated with the ability of malignant cell lines to cause breast cancer in mice. Because BP1 is expressed abnormally in breast tumors, it could provide a useful target for therapy, particularly in patients with ER-negative tumors. The frequent expression of BP1 in all tumor grades suggests that activation of BP1 is an early event

  5. Homeobox A7 stimulates breast cancer cell proliferation by up-regulating estrogen receptor-alpha

    Energy Technology Data Exchange (ETDEWEB)

    Zhang, Yu [Department of Reproductive Endocrinology, Women’s Hospital, School of Medicine, Zhejiang University, Hangzhou 310006 (China); Department of Obstetrics and Gynaecology, Child and Family Research Institute, University of British Columbia, Vancouver, British Columbia V5Z 4H4 (Canada); Cheng, Jung-Chien [Department of Obstetrics and Gynaecology, Child and Family Research Institute, University of British Columbia, Vancouver, British Columbia V5Z 4H4 (Canada); Huang, He-Feng, E-mail: huanghefg@hotmail.com [Department of Reproductive Endocrinology, Women’s Hospital, School of Medicine, Zhejiang University, Hangzhou 310006 (China); Leung, Peter C.K., E-mail: peter.leung@ubc.ca [Department of Reproductive Endocrinology, Women’s Hospital, School of Medicine, Zhejiang University, Hangzhou 310006 (China); Department of Obstetrics and Gynaecology, Child and Family Research Institute, University of British Columbia, Vancouver, British Columbia V5Z 4H4 (Canada)

    2013-11-01

    Highlights: •HOXA7 regulates MCF7 cell proliferation. •HOXA7 up-regulates ERα expression. •HOXA7 mediates estrogen-induced MCF7 cell proliferation. -- Abstract: Breast cancer is the most common hormone-dependent malignancy in women. Homeobox (HOX) transcription factors regulate many cellular functions, including cell migration, proliferation and differentiation. The aberrant expression of HOX genes has been reported to be associated with human reproductive cancers. Estradiol (E2) and its nuclear receptors, estrogen receptor (ER)-alpha and ER-beta, are known to play critical roles in the regulation of breast cancer cell growth. However, an understanding of the potential relationship between HOXA7 and ER in breast cancer cells is limited. In this study, our results demonstrate that knockdown of HOXA7 in MCF7 cells significantly decreased cell proliferation and ERα expression. In addition, HOXA7 knockdown attenuated E2-induced cell proliferation as well as progesterone receptor (PR) expression. The stimulatory effects of E2 on cell proliferation and PR expression were abolished by co-treatment with ICI 182780, a selective ERα antagonist. In contrast, overexpression of HOXA7 significantly stimulated cell proliferation and ERα expression. Moreover, E2-induced cell proliferation, as well as PR expression, was enhanced by the overexpression of HOXA7. Neither knockdown nor overexpression of HOXA7 affected the ER-beta levels. Our results demonstrate a novel mechanistic role for HOXA7 in modulating breast cancer cell proliferation via regulation of ERα expression. This finding contributes to our understanding of the role HOXA7 plays in regulating the proliferation of ER-positive cancer cells.

  6. NKL homeobox gene MSX1 acts like a tumor suppressor in NK-cell leukemia.

    Science.gov (United States)

    Nagel, Stefan; Pommerenke, Claudia; Meyer, Corinna; Kaufmann, Maren; MacLeod, Roderick A F; Drexler, Hans G

    2017-09-15

    NKL homeobox gene MSX1 is physiologically expressed in lymphoid progenitors and subsequently downregulated in developing T- and B-cells. In contrast, elevated expression levels of MSX1 persist in mature natural killer (NK)-cells, indicating a functional role in this compartment. While T-cell acute lymphoblastic leukemia (T-ALL) subsets exhibit aberrant overexpression of MSX1, we show here that in malignant NK-cells the level of MSX1 transcripts is aberrantly downregulated. Chromosomal deletions at 4p16 hosting the MSX1 locus have been described in NK-cell leukemia patients. However, NK-cell lines analyzed here showed normal MSX1 gene configurations, indicating that this aberration might be uncommon. To identify alternative MSX1 regulatory mechanisms we compared expression profiling data of primary normal NK-cells and malignant NK-cell lines. This procedure revealed several deregulated genes including overexpressed IRF4, MIR155HG and MIR17HG and downregulated AUTS2, EP300, GATA3 and HHEX. As shown recently, chromatin-modulator AUTS2 is overexpressed in T-ALL subsets where it mediates aberrant transcriptional activation of MSX1. Here, our data demonstrate that in malignant NK-cell lines AUTS2 performed MSX1 activation as well, but in accordance with downregulated MSX1 transcription therein we detected reduced AUTS2 expression, a small genomic deletion at 7q11 removing exons 3 and 4, and truncating mutations in exon 1. Moreover, genomic profiling and chromosomal analyses of NK-cell lines demonstrated amplification of IRF4 at 6p25 and deletion of PRDM1 at 6q21, highlighting their potential oncogenic impact. Functional analyses performed via knockdown or forced expression of these genes revealed regulatory network disturbances effecting downregulation of MSX1 which may underlie malignant development in NK-cells.

  7. Identification of a putative nuclear export signal motif in human NANOG homeobox domain

    International Nuclear Information System (INIS)

    Park, Sung-Won; Do, Hyun-Jin; Huh, Sun-Hyung; Sung, Boreum; Uhm, Sang-Jun; Song, Hyuk; Kim, Nam-Hyung; Kim, Jae-Hwan

    2012-01-01

    Highlights: ► We found the putative nuclear export signal motif within human NANOG homeodomain. ► Leucine-rich residues are important for human NANOG homeodomain nuclear export. ► CRM1-specific inhibitor LMB blocked the potent human NANOG NES-mediated nuclear export. -- Abstract: NANOG is a homeobox-containing transcription factor that plays an important role in pluripotent stem cells and tumorigenic cells. To understand how nuclear localization of human NANOG is regulated, the NANOG sequence was examined and a leucine-rich nuclear export signal (NES) motif ( 125 MQELSNILNL 134 ) was found in the homeodomain (HD). To functionally validate the putative NES motif, deletion and site-directed mutants were fused to an EGFP expression vector and transfected into COS-7 cells, and the localization of the proteins was examined. While hNANOG HD exclusively localized to the nucleus, a mutant with both NLSs deleted and only the putative NES motif contained (hNANOG HD-ΔNLSs) was predominantly cytoplasmic, as observed by nucleo/cytoplasmic fractionation and Western blot analysis as well as confocal microscopy. Furthermore, site-directed mutagenesis of the putative NES motif in a partial hNANOG HD only containing either one of the two NLS motifs led to localization in the nucleus, suggesting that the NES motif may play a functional role in nuclear export. Furthermore, CRM1-specific nuclear export inhibitor LMB blocked the hNANOG potent NES-mediated export, suggesting that the leucine-rich motif may function in CRM1-mediated nuclear export of hNANOG. Collectively, a NES motif is present in the hNANOG HD and may be functionally involved in CRM1-mediated nuclear export pathway.

  8. Do microorganism stoichiometric alterations affect carbon sequestration in paddy soil subjected to phosphorus input?

    Science.gov (United States)

    Zhang, ZhiJian; Li, HongYi; Hu, Jiao; Li, Xia; He, Qiang; Tian, GuangMing; Wang, Hang; Wang, ShunYao; Wang, Bei

    2015-04-01

    Ecological stoichiometry provides a powerful tool for integrating microbial biomass stoichiometry with ecosystem processes, opening far-reaching possibilities for linking microbial dynamics to soil carbon (C) metabolism in response to agricultural nutrient management. Despite its importance to crop yield, the role of phosphorus (P) with respect to ecological stoichiometry and soil C sequestration in paddy fields remains poorly understood, which limits our ability to predict nutrient-related soil C cycling. Here, we collected soil samples from a paddy field experiment after seven years of superphosphate application along a gradient of 0, 30, 60, and 90 (P-0 through P-90, respectively) kg.ha-1.yr-1 in order to evaluate the role of exogenous P on soil C sequestration through regulating microbial stoichiometry. P fertilization increased soil total organic C and labile organic C by 1-14% and 4-96%, respectively, while rice yield is a function of the activities of soil β-1,4-glucosidase (BG), acid phosphatase (AP), and the level of available soil P through a stepwise linear regression model. P input induced C limitation, as reflected by decreases in the ratios of C:P in soil and microbial biomass. An eco-enzymatic ratio indicating microbial investment in C vs. P acquisition, i.e., ln(BG): ln(AP), changed the ecological function of microbial C acquisition, and was stoichiometrically related to P input. This mechanism drove a shift in soil resource availability by increasing bacterial community richness and diversity, and stimulated soil C sequestration in the paddy field by enhancing C-degradation-related bacteria for the breakdown of plant-derived carbon sources. Therefore, the decline in the C:P stoichiometric ratio of soil microorganism biomass under P input was beneficial for soil C sequestration, which offered a "win-win" relationship for the maximum balance point between C sequestration and P availability for rice production in the face of climate change.

  9. SOUTHEAST REGIONAL CARBON SEQUESTRATION PARTNERSHIP (SECARB)

    Energy Technology Data Exchange (ETDEWEB)

    Kenneth J. Nemeth

    2004-09-01

    The Southeast Regional Carbon Sequestration Partnership (SECARB) is on schedule and within budget projections for the work completed during the first year of its two year program. Work during the semiannual period (third and fourth quarter) of the project (April 1--September 30, 2004) was conducted within a ''Task Responsibility Matrix.'' Under Task 1.0 Define Geographic Boundaries of the Region, Texas and Virginia were added during the second quarter of the project and no geographical changes occurred during the third or fourth quarter of the project. Under Task 2.0 Characterize the Region, general mapping and screening of sources and sinks has been completed, with integration and Geographical Information System (GIS) mapping ongoing. The first step focused on the macro level characterization of the region. Subsequent characterization will focus on smaller areas having high sequestration potential. Under Task 3.0 Identify and Address Issues for Technology Deployment, SECARB has completed a preliminary assessment of safety, regulatory, permitting, and accounting frameworks within the region to allow for wide-scale deployment of promising terrestrial and geologic sequestration approaches. Under Task 4.0 Develop Public Involvement and Education Mechanisms, SECARB has conducted a survey and focus group meeting to gain insight into approaches that will be taken to educate and involve the public. Task 5.0 and 6.0 will be implemented beginning October 1, 2004. Under Task 5.0 Identify the Most Promising Capture, Sequestration, and Transport Options, SECARB will evaluate findings from work performed during the first year and shift the focus of the project team from region-wide mapping and characterization to a more detailed screening approach designed to identify the most promising opportunities. Under Task 6.0 Prepare Action Plans for Implementation and Technology Validation Activity, the SECARB team will develop an integrated approach to implementing

  10. Pryce type I sequestration: no mosquito shooting.

    Science.gov (United States)

    Barik, Ramachandra; Patnaik, Amar Narayan; Malempati, Amaresh Rao; Nemani, Lalita

    2015-06-01

    We report a case of a 40-year-old woman with congenital dual arterial supply to an otherwise normal left lower lobe, causing hyperperfusion lung injury. In addition to near normal pulmonary arterial supply, the lower lobe of the left lung received a systemic arterial supply from the descending thoracic aorta. The patient was successfully managed by surgical ligation of the systemic arterial supply without lobectomy. We discuss when to defer lobectomy in Pryce type I sequestration. © The Author(s) 2014 Reprints and permissions: sagepub.co.uk/journalsPermissions.nav.

  11. CO2, the promises of geological sequestration

    International Nuclear Information System (INIS)

    Rouat, S.

    2006-01-01

    Trapping part of the world CO 2 effluents in the deep underground is a profitable and ecological way to limit the global warming. This digest paper presents the different ways of CO 2 sequestration (depleted oil and gas fields, unexploited coal seams, saline aquifers), the other possible solutions for CO 2 abatement (injection in the bottom of the ocean, conversion into carbonates by injection into basic rocks, fixation by photosynthesis thanks to micro-algae cultivation), and takes stock of the experiments in progress (Snoehvit field in Norway, European project Castor). (J.S.)

  12. CARBON SEQUESTRATION ON SURFACE MINE LANDS

    Energy Technology Data Exchange (ETDEWEB)

    Donald H. Graves; Christopher Barton; Richard Sweigard; Richard Warner

    2005-06-22

    An area planted in 2004 on Bent Mountain in Pike County was shifted to the Department of Energy project to centralize an area to become a demonstration site. An additional 98.3 acres were planted on Peabody lands in western Kentucky and Bent Mountain to bring the total area under study by this project to 556.5 acres as indicated in Table 2. Major efforts this quarter include the implementation of new plots that will examine the influence of differing geologic material on tree growth and survival, water quality and quantity and carbon sequestration. Normal monitoring and maintenance was conducted and additional instrumentation was installed to monitor the new areas planted.

  13. SOUTHEAST REGIONAL CARBON SEQUESTRATION PARTNERSHP (SECARB)

    Energy Technology Data Exchange (ETDEWEB)

    Kenneth J. Nemeth

    2005-04-01

    The Southeast Regional Carbon Sequestration Partnership (SECARB) is on schedule and within budget projections for the work completed during the first 18-months of its two year program. Work during the semiannual period (fifth and sixth project quarters) of the project (October 1, 2004-March 31, 2005) was conducted within a ''Task Responsibility Matrix.'' Under Task 1.0 Define Geographic Boundaries of the Region, no changes occurred during the fifth or sixth quarters of the project. Under Task 2.0 Characterize the Region, refinements have been made to the general mapping and screening of sources and sinks. Integration and geographical information systems (GIS) mapping is ongoing. Characterization during this period was focused on smaller areas having high sequestration potential. Under Task 3.0 Identify and Address Issues for Technology Deployment, SECARB continues to expand upon its assessment of safety, regulatory, permitting, and accounting frameworks within the region to allow for wide-scale deployment of promising terrestrial and geologic sequestration approaches. Under Task 4.0 Develop Public Involvement and Education Mechanisms, SECARB has used results of a survey and focus group meeting to refine approaches that are being taken to educate and involve the public. Under Task 5.0 Identify the Most Promising Capture, Sequestration, and Transport Options, SECARB has evaluated findings from work performed during the first 18-months. The focus of the project team has shifted from region-wide mapping and characterization to a more detailed screening approach designed to identify the most promising opportunities. Under Task 6.0 Prepare Action Plans for Implementation and Technology Validation Activity, the SECARB team is developing an integrated approach to implementing the most promising opportunities and in setting up measurement, monitoring and verification (MMV) programs for the most promising opportunities. Milestones completed during the

  14. T-box and homeobox genes from the ctenophore Pleurobrachia pileus: comparison of Brachyury, Tbx2/3 and Tlx in basal metazoans and bilaterians.

    Science.gov (United States)

    Martinelli, Cosimo; Spring, Jürg

    2005-09-12

    Most animals are classified as Bilateria and only four phyla are still extant as outgroups, namely Porifera, Placozoa, Cnidaria and Ctenophora. These non-bilaterians were not considered to have a mesoderm and hence mesoderm-specific genes. However, the T-box gene Brachyury could be isolated from sponges, placozoans and cnidarians. Here, we describe the first Brachyury and a Tbx2/3 homologue from a ctenophore. In addition, analysing T-box and homeobox genes under comparable conditions in all four basal phyla lead to the discovery of novel T-box genes in sponges and cnidarians and a Tlx homeobox gene in the ctenophore Pleurobrachia pileus. The conservation of the T-box and the homeobox genes suggest that distinct subfamilies with different roles in bilaterians were already split in non-bilaterians.

  15. Carbon storage and sequestration by trees in urban and community areas of the United States.

    Science.gov (United States)

    Nowak, David J; Greenfield, Eric J; Hoehn, Robert E; Lapoint, Elizabeth

    2013-07-01

    Carbon storage and sequestration by urban trees in the United States was quantified to assess the magnitude and role of urban forests in relation to climate change. Urban tree field data from 28 cities and 6 states were used to determine the average carbon density per unit of tree cover. These data were applied to statewide urban tree cover measurements to determine total urban forest carbon storage and annual sequestration by state and nationally. Urban whole tree carbon storage densities average 7.69 kg C m(-2) of tree cover and sequestration densities average 0.28 kg C m(-2) of tree cover per year. Total tree carbon storage in U.S. urban areas (c. 2005) is estimated at 643 million tonnes ($50.5 billion value; 95% CI = 597 million and 690 million tonnes) and annual sequestration is estimated at 25.6 million tonnes ($2.0 billion value; 95% CI = 23.7 million to 27.4 million tonnes). Published by Elsevier Ltd.

  16. An EG-VEGF-dependent decrease in homeobox gene NKX3.1 contributes to cytotrophoblast dysfunction: a possible mechanism in human fetal growth restriction.

    Science.gov (United States)

    Murthi, P; Brouillet, S; Pratt, A; Borg, Aj; Kalionis, B; Goffin, F; Tsatsaris, V; Munaut, C; Feige, Jj; Benharouga, M; Fournier, T; Alfaidy, N

    2015-07-21

    Idiopathic fetal growth restriction (FGR) is frequently associated with placental insufficiency. Previous reports have provided evidence that EG-VEGF (endocrine gland derived-vascular endothelial growth factor), a placental secreted protein, is expressed during the first trimester of pregnancy, controls both trophoblast proliferation and invasion, and its increased expression is associated with human FGR. In this study, we hypothesise that EG-VEGF-dependent change in placental homeobox gene expressions contribute to trophoblast dysfunction in idiopathic FGR. The changes in EG-VEGF-dependent homeobox gene expressions were determined using a Homeobox gene cDNA array on placental explants of 8-12 weeks' gestation after stimulation with EG-VEGF in vitro for 24 hours. The Homeobox gene array identified a >5-fold increase in HOXA9, HOXC8, HOXC10, HOXD1, HOXD8, HOXD9 and HOXD11, while NKX 3.1 showed a >2 fold-decrease in mRNA expression compared to untreated controls. Homeobox gene NKX3.1 was selected as a candidate because it is a downstream target of EG-VEGF and its expression and functional role are largely unknown in control and idiopathic FGR-affected placentae. Real-time PCR and immunoblotting showed a significant decrease in NKX3.1 mRNA and protein levels, respectively, in placentae from FGR compared to control pregnancies. Gene inactivation in vitro using short-interference RNA specific for NKX3.1 demonstrated an increase in BeWo cell differentiation and a decrease in HTR8-SVneo proliferation. We conclude that the decreased expression of homeobox gene NKX3.1 down-stream of EG-VEGF may contribute to the trophoblast dysfunction associated with idiopathic FGR pregnancies.

  17. Modelisation du stock de biomasse et dynamique de sequestration ...

    African Journals Online (AJOL)

    Mots clés: Jatropha curcas, séquestration, carbone, Bénin, Afrique de l'Ouest. English Title: Biomass stock modeling and dynamics of mineral and carbon sequestration of Jatropha curcas L. under different soil types in Benin. English Abstract. In West Africa, carbon sequestration function of Jatropha curcas shrubs and their ...

  18. Sequestration of arsenic in ombrotrophic peatlands

    Science.gov (United States)

    Rothwell, James; Hudson-Edwards, Karen; Taylor, Kevin; Polya, David; Evans, Martin; Allott, Tim

    2014-05-01

    Peatlands can be important stores of arsenic but we are lacking spectroscopic evidence of the sequestration pathways of this toxic metalloid in peatland environments. This study reports on the solid-phase speciation of anthropogenically-derived arsenic in atmospherically contaminated peat from the Peak District National Park (UK). Surface and sub-surface peat samples were analysed by synchrotron X-ray absorption spectroscopy on B18 beamline at Diamond Light Source (UK). The results suggest that there are contrasting arsenic sequestration mechanisms in the peat. The bulk arsenic speciation results, in combination with strong arsenic-iron correlations at the surface, suggest that iron (hydr)oxides are key phases for the immobilisation of arsenic at the peat surface. In contrast, the deeper peat samples are dominated by arsenic sulphides (arsenopyrite, realgar and orpiment). Given that these peats receive inputs solely from the atmosphere, the presence of these sulphide phases suggests an in-situ authigenic formation. Redox oscillations in the peat due to a fluctuating water table and an abundant store of legacy sulphur from historic acid rain inputs may favour the precipitation of arsenic sequestering sulphides in sub-surface horizons. Oxidation-induced loss of these arsenic sequestering sulphur species by water table drawdown has important implications for the mobility of arsenic and the quality of waters draining peatlands.

  19. Sequestration of CO2 in salt caverns

    International Nuclear Information System (INIS)

    Dusseault, M.B.; Rothenburg, L.; Bachu, S.

    2002-01-01

    The greenhouse effect is thought to be greatly affected by anthropogenic and naturally generated gases, such as carbon dioxide. The reduction of greenhouse gas emissions in the atmosphere could be effected through the permanent storage of carbon dioxide in dissolved salt caverns. A large number of suitable salt deposits are located in Alberta, especially the Lotsberg Salt of east-central Alberta. A major advantage of this deposit is its proximity to present and future point sources of carbon dioxide associated with fossil fuel development projects. Using the perspective of the long term fate of the stored carbon dioxide, the authors presented the characteristics of the Lotsberg Salt and the overlying strata. A high level of security against leakage and migration of the gas back to the biosphere is ensured by several features discussed in the paper. The authors propose a procedure that would be applicable for the creation, testing, and filling of a salt cavern. Achieving a long term prediction of the behavior of the cavern during slow closure, coupled to the pressure and volume behavior of the gas within the cavern represents the critical factor. The authors came up with an acceptable prediction by using a semi-analytical model. The use of salt caverns for the permanent sequestration of carbon dioxide has not yet faced technical obstacles that would prevent it. The authors argue that sequestration of carbon dioxide in salt caverns represents an environmentally acceptable option in Alberta. 11 refs., 3 figs

  20. A case of intralobar pulmonary sequestration

    International Nuclear Information System (INIS)

    Misawa, Takuo; Hongo, Minoru; Okubo, Shinichi; Yamada, Hiroyoshi; Matsuoka, Ken; Soga, Naoko; Kono, Jun; Kusama, Shozo

    1985-01-01

    A 57-year-old female was admitted to our hospital, complaining of hemoptysis. On auscultation, moist rales were audible at the lower portion of left posterior chest. Plain chest roentgenogram showed a round shadow in the left lower lung field. Computed tomography with contrast enhancement revealed an abnormal structure which was contiguous to a strand structure. Dynamic scanning demonstrated opacification of the strand structure and that of the greater part of the abnormal structure during peak opacification of the descending aorta. A part of the abnormal structure was opacified during the same phase as the opacification of the right ventricle and pulmonary artery. A diagnosis of intralobar pulmonary sequestration associated with pulmonary arterio-venous malformation was confirmed by thoracic aortography and left pulmonary arteriography. The hemoptysis was found to be caused by chronic bronchitis. It was emphasized that dynamic computed tomography is very useful to diagnose intralobar pulmonary sequestration and to assess the presence of pulmonary arterio-venous malformation. In addition, it is of particular interest that this case cannot be assigned to any category of Pryce's classification although it resembles both type I and IV. (author)

  1. Double-Difference Tomography for Sequestration MVA

    Energy Technology Data Exchange (ETDEWEB)

    Westman, Erik

    2008-12-31

    Analysis of synthetic data was performed to determine the most cost-effective tomographic monitoring system for a geologic carbon sequestration injection site. Double-difference tomographic inversion was performed on 125 synthetic data sets: five stages of CO2 plume growth, five seismic event regions, and five geophone arrays. Each resulting velocity model was compared quantitatively to its respective synthetic velocity model to determine an accuracy value. The results were examined to determine a relationship between cost and accuracy in monitoring, verification, and accounting applications using double-difference tomography. The geophone arrays with widely-varying geophone locations, both laterally and vertically, performed best. Additionally, double difference seismic tomography was performed using travel time data from a carbon sequestration site at the Aneth oil field in southeast Utah as part of a Department of Energy initiative on monitoring, verification, and accounting (MVA) of sequestered CO2. A total of 1,211 seismic events were recorded from a borehole array consisting of 22 geophones. Artificial velocity models were created to determine the ease with which different CO2 plume locations and sizes can be detected. Most likely because of the poor geophone arrangement, a low velocity zone in the Desert Creek reservoir can only be detected when regions of test site containing the highest ray path coverage are considered. MVA accuracy and precision may be improved through the use of a receiver array that provides more comprehensive ray path coverage.

  2. Carbon Sequestration in Colorado's Lands: A Spatial and Policy Analysis

    Science.gov (United States)

    Brandt, N.; Brazeau, A.; Browning, K.; Meier, R.

    2017-12-01

    Managing landscapes to enhance terrestrial carbon sequestration has significant potential to mitigate climate change. While a previous carbon baseline assessment in Colorado has been published (Conant et al, 2007), our study pulls from the existing literature to conduct an updated baseline assessment of carbon stocks and a unique review of carbon policies in Colorado. Through a multi-level spatial analysis based in GIS and informed by a literature review, we established a carbon stock baseline and ran four land use and carbon stock projection scenarios using Monte Carlo simulations. We identified 11 key policy recommendations for improving Colorado's carbon stocks, and evaluated each using Bardach's policy matrix approach (Bardach, 2012). We utilized a series of case studies to support our policy recommendations. We found that Colorado's lands have a carbon stock of 3,334 MMT CO2eq, with Forests and Woodlands holding the largest stocks, at 1,490 and 774 MMT CO2eq respectively. Avoided conversion of all Grasslands, Forests, and Wetlands in Colorado projected over 40 years would increase carbon stocks by 32 MMT CO2eq, 1,053 MMT CO2eq, and 36 MMT CO2eq, respectively. Over the 40-year study period, Forests and Woodlands areas are projected to shrink while Shrublands and Developed areas are projected to grow. Those projections suggest sizable increases in area of future wildfires and development in Colorado. We found that numerous policy opportunities to sequester carbon exist at different jurisdictional levels and across land cover types. The largest opportunities were found in state-level policies and policies impacting Forests, Grasslands, and Wetlands. The passage of statewide emission reduction legislation has the highest potential to impact carbon sequestration, although political and administrative feasibility of this option are relatively low. This study contributes to the broader field of carbon sequestration literature by examining the nexus of carbon stocks

  3. Thermodynamic Data for Geochemical Modeling of Carbonate Reactions Associated with CO2 Sequestration – Literature Review

    Energy Technology Data Exchange (ETDEWEB)

    Krupka, Kenneth M. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); Cantrell, Kirk J. [Pacific Northwest National Lab. (PNNL), Richland, WA (United States); McGrail, B. Peter [Pacific Northwest National Lab. (PNNL), Richland, WA (United States)

    2010-09-01

    Permanent storage of anthropogenic CO2 in deep geologic formations is being considered as a means to reduce the concentration of atmospheric CO2 and thus its contribution to global climate change. To ensure safe and effective geologic sequestration, numerous studies have been completed of the extent to which the CO2 migrates within geologic formations and what physical and geochemical changes occur in these formations when CO2 is injected. Sophisticated, computerized reservoir simulations are used as part of field site and laboratory CO2 sequestration studies. These simulations use coupled multiphase flow-reactive chemical transport models and/or standalone (i.e., no coupled fluid transport) geochemical models to calculate gas solubility, aqueous complexation, reduction/oxidation (redox), and/or mineral solubility reactions related to CO2 injection and sequestration. Thermodynamic data are critical inputs to modeling geochemical processes. The adequacy of thermodynamic data for carbonate compounds has been identified as an important data requirement for the successful application of these geochemical reaction models to CO2 sequestration. A review of thermodynamic data for CO2 gas and carbonate aqueous species and minerals present in published data compilations and databases used in geochemical reaction models was therefore completed. Published studies that describe mineralogical analyses from CO2 sequestration field and natural analogue sites and laboratory studies were also reviewed to identify specific carbonate minerals that are important to CO2 sequestration reactions and therefore require thermodynamic data. The results of the literature review indicated that an extensive thermodynamic database exists for CO2 and CH4 gases, carbonate aqueous species, and carbonate minerals. Values of ΔfG298° and/or log Kr,298° are available for essentially all of these compounds. However, log Kr,T° or heat capacity values at temperatures above 298 K exist for less than

  4. Potential for carbon sequestration and mitigation of climate change by irrigation of grasslands

    International Nuclear Information System (INIS)

    Olsson, Alexander; Campana, Pietro Elia; Lind, Mårten; Yan, Jinyue

    2014-01-01

    Highlights: • A generic method for climate change mitigation feasibility of PVWPS is developed. • Restoration of degraded lands in China has large climate change mitigation potential. • PV produces excess electricity included in the mitigation potential of the system. • The benefit is higher than if the PV were to produce electricity for the grid only. - Abstract: The climate change mitigation potential of irrigation powered by a photovoltaic water pumping system (PVWPS) to restore degraded grasslands has been investigated using the Intergovernmental Panel on Climate Change (IPCC) 2006 Guidelines for National Greenhouse Gas Inventories for Agriculture, Forestry and Other Land Use. The purpose of this study is to develop a generic and simple method to estimate the climate change mitigation benefit of a PVWPS. The possibility to develop carbon credits for the carbon offset markets has also been studied comparing carbon sequestration in grasslands to other carbon sequestration projects. The soil carbon sequestration following irrigation of the grassland is calculated as an annual increase in the soil organic carbon pool. The PVWPS can also generate an excess of electricity when irrigation is not needed and the emissions reductions due to substitution of grid electricity give additional climate change mitigation potential. The results from this study show that the carbon sequestration and emissions reductions benefits per land area using a PVWPS for irrigating grasslands are comparable to other carbon sequestration options such as switching to no-till practice. Soil carbon in irrigated grasslands is increased with over 60% relative to severely degraded grasslands and if nitrogen fixing species are introduced the increase in soil organic carbon can be almost 80%. Renewable electricity generation by the PVWPS will further increase the mitigation benefit of the system with 70–90%. When applying the methodology developed in this paper to a case in Qinghai, China

  5. Thermodynamic Data for Geochemical Modeling of Carbonate Reactions Associated with CO2 Sequestration - Literature Review

    International Nuclear Information System (INIS)

    Krupka, Kenneth M.; Cantrell, Kirk J.; McGrail, B. Peter

    2010-01-01

    Permanent storage of anthropogenic CO 2 in deep geologic formations is being considered as a means to reduce the concentration of atmospheric CO 2 and thus its contribution to global climate change. To ensure safe and effective geologic sequestration, numerous studies have been completed of the extent to which the CO 2 migrates within geologic formations and what physical and geochemical changes occur in these formations when CO 2 is injected. Sophisticated, computerized reservoir simulations are used as part of field site and laboratory CO 2 sequestration studies. These simulations use coupled multiphase flow-reactive chemical transport models and/or standalone (i.e., no coupled fluid transport) geochemical models to calculate gas solubility, aqueous complexation, reduction/oxidation (redox), and/or mineral solubility reactions related to CO 2 injection and sequestration. Thermodynamic data are critical inputs to modeling geochemical processes. The adequacy of thermodynamic data for carbonate compounds has been identified as an important data requirement for the successful application of these geochemical reaction models to CO 2 sequestration. A review of thermodynamic data for CO 2 gas and carbonate aqueous species and minerals present in published data compilations and databases used in geochemical reaction models was therefore completed. Published studies that describe mineralogical analyses from CO 2 sequestration field and natural analogue sites and laboratory studies were also reviewed to identify specific carbonate minerals that are important to CO 2 sequestration reactions and therefore require thermodynamic data. The results of the literature review indicated that an extensive thermodynamic database exists for CO 2 and CH 4 gases, carbonate aqueous species, and carbonate minerals. Values of Δ f G 298 o and/or log K r,298 o are available for essentially all of these compounds. However, log K r,T o or heat capacity values at temperatures above 298 K exist

  6. Lim homeobox genes in the Ctenophore Mnemiopsis leidyi: the evolution of neural cell type specification

    Directory of Open Access Journals (Sweden)

    Simmons David K

    2012-01-01

    Full Text Available Abstract Background Nervous systems are thought to be important to the evolutionary success and diversification of metazoans, yet little is known about the origin of simple nervous systems at the base of the animal tree. Recent data suggest that ctenophores, a group of macroscopic pelagic marine invertebrates, are the most ancient group of animals that possess a definitive nervous system consisting of a distributed nerve net and an apical statocyst. This study reports on details of the evolution of the neural cell type specifying transcription factor family of LIM homeobox containing genes (Lhx, which have highly conserved functions in neural specification in bilaterian animals. Results Using next generation sequencing, the first draft of the genome of the ctenophore Mnemiopsis leidyi has been generated. The Lhx genes in all animals are represented by seven subfamilies (Lhx1/5, Lhx3/4, Lmx, Islet, Lhx2/9, Lhx6/8, and LMO of which four were found to be represented in the ctenophore lineage (Lhx1/5, Lhx3/4, Lmx, and Islet. Interestingly, the ctenophore Lhx gene complement is more similar to the sponge complement (sponges do not possess neurons than to either the cnidarian-bilaterian or placozoan Lhx complements. Using whole mount in situ hybridization, the Lhx gene expression patterns were examined and found to be expressed around the blastopore and in cells that give rise to the apical organ and putative neural sensory cells. Conclusion This research gives us a first look at neural cell type specification in the ctenophore M. leidyi. Within M. leidyi, Lhx genes are expressed in overlapping domains within proposed neural cellular and sensory cell territories. These data suggest that Lhx genes likely played a conserved role in the patterning of sensory cells in the ancestor of sponges and ctenophores, and may provide a link to the expression of Lhx orthologs in sponge larval photoreceptive cells. Lhx genes were later co-opted into patterning more

  7. Differential induction of four msx homeobox genes during fin development and regeneration in zebrafish.

    Science.gov (United States)

    Akimenko, M A; Johnson, S L; Westerfield, M; Ekker, M

    1995-02-01

    To study the genetic regulation of growth control and pattern formation during fin development and regeneration, we have analysed the expression of four homeobox genes, msxA, msxB, msxC and msxD in zebrafish fins. The median fin fold, which gives rise to the unpaired fins, expresses these four msx genes during development. Transcripts of the genes are also present in cells of the presumptive pectoral fin buds. The most distal cells, the apical ectodermal ridge of the paired fins and the cleft and flanking cells of the median fin fold express all these msx genes with the exception of msxC. Mesenchymal cells underlying the most distal cells express all four genes. Expression of the msx genes in the fin fold and fin buds is transient and, by 3 days after fertilization, msx expression in the median fin fold falls below levels detectable by in situ hybridization. Although the fins of adult zebrafish normally have levels of msx transcripts undetectable by in situ hybridization, expression of all four genes is strongly reinduced during regeneration of both paired and unpaired fins. Induction of msx gene expression in regenerating caudal fins occurs as early as 30 hours postamputation. As the blastema forms, the levels of expression increase and reach a maximum between the third and fifth days. Then, msx expression progressively declines and disappears by day 12 when the caudal fin has grown back to its normal size. In the regenerating fin, the blastema cells that develop at the tip of each fin ray express msxB and msxC. Cells of the overlying epithelium express msxA and msxD, but do not express msxB or msxC. Amputations at various levels along the proximodistal axis of the fin suggest that msxB expression depends upon the position of the blastema, with cells of the rapidly proliferating proximal blastema expressing higher levels than the cells of the less rapidly proliferating distal blastema. Expression of msxC and msxD is independent of the position of the blastema cell

  8. Sequestrated thrombolysis: Comparative evaluation in vivo

    International Nuclear Information System (INIS)

    Roy, Sumit; Laerum, Frode; Brosstad, Frank; Kvernebo, Knut; Sakariassen, Kjell S.

    2000-01-01

    Purpose: Lysis of a thrombus is a function of the local concentration of thrombolytic enzymes. This study was designed to determine in a porcine model of acute deep vein thrombosis (DVT) whether perithrombic sequestration of small volumes of a concentrated enzyme solution can accelerate the process of thrombolysis.Methods: DVT was induced in both hind limbs using a previously described technique (n=32). Thirty minutes later the animal was heparinized and unilateral thrombolysis was attempted using 8 mg recombinant tissue plasminogen activator (rt-PA); saline was administered in the opposite leg. For conventional high-volume infusion (CI) (n=5) rt-PA (0.067 mg/ml) was infused at l ml/min. For sequestrated thrombolysis the external iliac vein was endoluminally occluded, and rt-PA (0.25 mg/ml) administered either for proximal injection (ST-P) (n=5). as a bolus every 3 min through a microcatheter placed via the balloon catheter, or for transthrombic injection (ST-T) (n=5), as a bolus every 3 min through a Katzen wire in the balloon catheter. At autopsy, the thrombus mass in the iliofemoral veins was measured, and the extent of residual thrombosis in the venous tributaries graded at four sites. From these data a thrombolysis score was calculated.Results: One pig died before thrombolysis could be performed. Only with ST-T was residual thrombus mass in the test limb normalized to control, residual thrombus index (RTF), consistently less than unity. The median RTI of this group was 0.50 (range 0.39-0.97) compared with 1.22 (0.64-1.38) for ST-P and 0.88 (0.37-1.13) for CI. Compared with contralateral controls, a lower grade of residual thrombosis in tributaries was observed in test limbs at more venous sites with ST-T (8/20; 95% confidence interval 5-13) and ST-P (9/20; confidence interval 5-13) than with CI (2/20; confidence interval 0-5) (p=0.04). A trend toward lower thrombolysis scores was observed with ST-T (p=0.08). Systemic fibrinogenolysis was not observed in any of

  9. CO{sub 2} sequestration; Sequestration du CO{sub 2}

    Energy Technology Data Exchange (ETDEWEB)

    Acket, C

    2008-04-15

    The carbon dioxide is the main gas associated to the human activity, generating consequences on the greenhouse effect. By the use of fossil fuels, the human activity generates each year, about 26 milliards of tons. Only the half of theses releases is absorbed by the nature, the rest reinforces the greenhouse effect. To reduce the emissions two actions are proposed: a better energy consumption and the development of technologies which do not produce, or weakly, greenhouse effect gases. Another way is studied: the carbon sequestration and geological storage. This document details the different technologies of sequestration, the transport and the underground storage. It discusses also the economical and legislative aspects, providing examples and projects. (A.L.B.)

  10. Carbon Sequestration and Optimal Climate Policy

    International Nuclear Information System (INIS)

    Grimaud, Andre; Rouge, Luc

    2009-01-01

    We present an endogenous growth model in which the use of a non-renewable natural resource generates carbon-dioxide emissions that can be partly sequestered. This approach breaks with the systematic link between resource use and pollution emission. The accumulated stock of remaining emissions has a negative impact on household utility and corporate productivity. While sequestration quickens the optimal extraction rate, it can also generate higher emissions in the short run. It also has an adverse effect on economic growth. We study the impact of a carbon tax: the level of the tax has an effect in our model, its optimal level is positive, and it can be interpreted ex post as a decreasing ad valorem tax on the resource

  11. Cascade enzymatic reactions for efficient carbon sequestration.

    Science.gov (United States)

    Xia, Shunxiang; Zhao, Xueyan; Frigo-Vaz, Benjamin; Zheng, Wenyun; Kim, Jungbae; Wang, Ping

    2015-04-01

    Thermochemical processes developed for carbon capture and storage (CCS) offer high carbon capture capacities, but are generally hampered by low energy efficiency. Reversible cascade enzyme reactions are examined in this work for energy-efficient carbon sequestration. By integrating the reactions of two key enzymes of RTCA cycle, isocitrate dehydrogenase and aconitase, we demonstrate that intensified carbon capture can be realized through such cascade enzymatic reactions. Experiments show that enhanced thermodynamic driving force for carbon conversion can be attained via pH control under ambient conditions, and that the cascade reactions have the potential to capture 0.5 mol carbon at pH 6 for each mole of substrate applied. Overall it manifests that the carbon capture capacity of biocatalytic reactions, in addition to be energy efficient, can also be ultimately intensified to approach those realized with chemical absorbents such as MEA. Copyright © 2015 Elsevier Ltd. All rights reserved.

  12. Reduced homeobox protein MSX1 in human endometrial tissue is linked to infertility.

    Science.gov (United States)

    Bolnick, Alan D; Bolnick, Jay M; Kilburn, Brian A; Stewart, Tamika; Oakes, Jonathan; Rodriguez-Kovacs, Javier; Kohan-Ghadr, Hamid-Reza; Dai, Jing; Diamond, Michael P; Hirota, Yasushi; Drewlo, Sascha; Dey, Sudhansu K; Armant, D Randall

    2016-09-01

    Is protein expression of the muscle segment homeobox gene family member MSX1 altered in the human secretory endometrium by cell type, developmental stage or fertility? MSX1 protein levels, normally elevated in the secretory phase endometrium, were significantly reduced in endometrial biopsies obtained from women of infertile couples. Molecular changes in the endometrium are important for fertility in both animals and humans. Msx1 is expressed in the preimplantation mouse uterus and regulates uterine receptivity for implantation. The MSX protein persists a short time, after its message has been down-regulated. Microarray analysis of the human endometrium reveals a similar pattern of MSX1 mRNA expression that peaks before the receptive period, with depressed expression at implantation. Targeted deletion of uterine Msx1 and Msx2 in mice prevents the loss of epithelial cell polarity during implantation and causes infertility. MSX1 mRNA and cell type-specific levels of MSX1 protein were quantified from two retrospective cohorts during the human endometrial cycle. MSX1 protein expression patterns were compared between fertile and infertile couples. Selected samples were dual-labeled by immunofluorescence microscopy to localize E-cadherin and β-catenin in epithelial cells. MSX1 mRNA was quantified by PCR in endometrium from hysterectomies (n = 14) determined by endometrial dating to be in the late-proliferative (cycle days 10-13), early-secretory (cycle days 14-19) or mid-secretory (cycle days 20-24) phase. MSX1 protein was localized using high-throughput, semi-quantitative immunohistochemistry with sectioned endometrial biopsy tissues from fertile (n = 89) and infertile (n = 89) couples. Image analysis measured stain intensity specifically within the luminal epithelium, glands and stroma during the early-, mid- and late- (cycle days 25-28) secretory phases. MSX1 transcript increased 5-fold (P MSX1 protein displayed strong nuclear localization in the luminal epithelium

  13. A case of intralobar pulmonary sequestration

    International Nuclear Information System (INIS)

    Hongo, Minoru; Kambayashi, TakayukiF; Okubo, Shinichi

    1983-01-01

    A 41 year-old male was admitted to our hospital, complaining of slight fever, dry cough and general fatigue. On auscultation, bubbling rales were audible at the mid to lower portion of left posterior chest. Plain chest roentgenogram showed multiple cystic shadows with an air-fluid level in the left lower lobe. An abnormal finger-like shadow, which extended from the left hemidiaphragm to the multiple cysts, was found on lateral chest tomogram. Bronchogram revealed cystic dilatation of left B6 and B10. Computed tomogram with contrast enhancement demonstrated multiple cysts and an abnormal round-shaped structure, consisted of high density material, in the left lower lung. At the level of 12 mm below the round-shaped structure, an abnormal finger-like structure contiguous to the thoracic descending aorta was demonstrated. The density of these abnormal structures was 80 Hounsfield units, which was the same as that of the descending aorta. Thoracic aortogram disclosed an abnormal artery arising from the thoracic descending aorta, just above the left hemidiaphragm, which proceeded to the left lower lung horizontally, and extended to superior direction and divided into multiple branches. These vessels drained into the left atrium via left lower pulmonary vein. Diagnosis of intralobar pulmonary sequestration was confirmed by operation and consequently, the sequestered lung and the abnormal artery were successfully removed. It is emphasized that computed tomography with contrast enhancement is useful to detect the abnormal artery of pulmonary sequestration and that this method should be used to evaluate the vascular relationship of lung lesions. (author)

  14. Assessing ocean alkalinity for carbon sequestration

    Science.gov (United States)

    Renforth, Phil; Henderson, Gideon

    2017-09-01

    Over the coming century humanity may need to find reservoirs to store several trillions of tons of carbon dioxide (CO2) emitted from fossil fuel combustion, which would otherwise cause dangerous climate change if it were left in the atmosphere. Carbon storage in the ocean as bicarbonate ions (by increasing ocean alkalinity) has received very little attention. Yet recent work suggests sufficient capacity to sequester copious quantities of CO2. It may be possible to sequester hundreds of billions to trillions of tons of C without surpassing postindustrial average carbonate saturation states in the surface ocean. When globally distributed, the impact of elevated alkalinity is potentially small and may help ameliorate the effects of ocean acidification. However, the local impact around addition sites may be more acute but is specific to the mineral and technology. The alkalinity of the ocean increases naturally because of rock weathering in which >1.5 mol of carbon are removed from the atmosphere for every mole of magnesium or calcium dissolved from silicate minerals (e.g., wollastonite, olivine, and anorthite) and 0.5 mol for carbonate minerals (e.g., calcite and dolomite). These processes are responsible for naturally sequestering 0.5 billion tons of CO2 per year. Alkalinity is reduced in the ocean through carbonate mineral precipitation, which is almost exclusively formed from biological activity. Most of the previous work on the biological response to changes in carbonate chemistry have focused on acidifying conditions. More research is required to understand carbonate precipitation at elevated alkalinity to constrain the longevity of carbon storage. A range of technologies have been proposed to increase ocean alkalinity (accelerated weathering of limestone, enhanced weathering, electrochemical promoted weathering, and ocean liming), the cost of which may be comparable to alternative carbon sequestration proposals (e.g., $20-100 tCO2-1). There are still many

  15. An Overview of Geologic Carbon Sequestration Potential in California

    Energy Technology Data Exchange (ETDEWEB)

    Cameron Downey; John Clinkenbeard

    2005-10-01

    As part of the West Coast Regional Carbon Sequestration Partnership (WESTCARB), the California Geological Survey (CGS) conducted an assessment of geologic carbon sequestration potential in California. An inventory of sedimentary basins was screened for preliminary suitability for carbon sequestration. Criteria included porous and permeable strata, seals, and depth sufficient for critical state carbon dioxide (CO{sub 2}) injection. Of 104 basins inventoried, 27 met the criteria for further assessment. Petrophysical and fluid data from oil and gas reservoirs was used to characterize both saline aquifers and hydrocarbon reservoirs. Where available, well log or geophysical information was used to prepare basin-wide maps showing depth-to-basement and gross sand distribution. California's Cenozoic marine basins were determined to possess the most potential for geologic sequestration. These basins contain thick sedimentary sections, multiple saline aquifers and oil and gas reservoirs, widespread shale seals, and significant petrophysical data from oil and gas operations. Potential sequestration areas include the San Joaquin, Sacramento, Ventura, Los Angeles, and Eel River basins, followed by the smaller Salinas, La Honda, Cuyama, Livermore, Orinda, and Sonoma marine basins. California's terrestrial basins are generally too shallow for carbon sequestration. However, the Salton Trough and several smaller basins may offer opportunities for localized carbon sequestration.

  16. PV water pumping for carbon sequestration in dry land agriculture

    International Nuclear Information System (INIS)

    Olsson, Alexander; Campana, Pietro Elia; Lind, Mårten; Yan, Jinyue

    2015-01-01

    Highlights: • A novel model for carbon sequestration in dry land agriculture is developed. • We consider the water-food-energy-climate nexus to assess carbon sequestration. • Using water for carbon sequestration should be assessed critically. • Co-benefits of carbon sequestration should be included in the assessment. • Moisture feedback is part of the nexus model. - Abstract: This paper suggests a novel model for analysing carbon sequestration activities in dry land agriculture considering the water-food-energy-climate nexus. The paper is based on our on-going studies on photovoltaic water pumping (PVWP) systems for irrigation of grasslands in China. Two carbon sequestration projects are analysed in terms of their water productivity and carbon sequestration potential. It is concluded that the economic water productivity, i.e. how much water that is needed to produce an amount of grass, of grassland restoration is low and that there is a need to include several of the other co-benefits to justify the use of water for climate change mitigation. The co-benefits are illustrated in a nexus model including (1) climate change mitigation, (2) water availability, (3) downstream water impact, (4) energy security, (5) food security and (6) moisture recycling. We argue for a broad approach when analysing water for carbon sequestration. The model includes energy security and food security together with local and global water concerns. This makes analyses of dry land carbon sequestration activities more relevant and accurate. Without the nexus approach, the co-benefits of grassland restoration tend to be diminished

  17. The human homeobox genes MSX-1, MSX-2, and MOX-1 are differentially expressed in the dermis and epidermis in fetal and adult skin.

    Science.gov (United States)

    Stelnicki, E J; Kömüves, L G; Holmes, D; Clavin, W; Harrison, M R; Adzick, N S; Largman, C

    1997-10-01

    In order to identify homeobox genes which may regulate skin development and possibly mediate scarless fetal wound healing we have screened amplified human fetal skin cDNAs by polymerase chain reaction (PCR) using degenerate oligonucleotide primers designed against highly conserved regions within the homeobox. We identified three non-HOX homeobox genes, MSX-1, MSX-2, and MOX-1, which were differentially expressed in fetal and adult human skin. MSX-1 and MSX-2 were detected in the epidermis, hair follicles, and fibroblasts of the developing fetal skin by in situ hybridization. In contrast, MSX-1 and MSX-2 expression in adult skin was confined to epithelially derived structures. Immunohistochemical analysis of these two genes suggested that their respective homeoproteins may be differentially regulated. While Msx-1 was detected in the cell nucleus of both fetal and adult skin; Msx-2 was detected as a diffuse cytoplasmic signal in fetal epidermis and portions of the hair follicle and dermis, but was localized to the nucleus in adult epidermis. MOX-1 was expressed in a pattern similar to MSX early in gestation but then was restricted exclusively to follicular cells in the innermost layer of the outer root sheath by 21 weeks of development. Furthermore, MOX-1 expression was completely absent in adult cutaneous tissue. These data imply that each of these homeobox genes plays a specific role in skin development.

  18. Zinc-fingers and homeoboxes 1 (ZHX1) binds DNA methyltransferase (DNMT) 3B to enhance DNMT3B-mediated transcriptional repression

    International Nuclear Information System (INIS)

    Kim, Sung-Hak; Park, Jinah; Choi, Moon-Chang; Kim, Hwang-Phill; Park, Jung-Hyun; Jung, Yeonjoo; Lee, Ju-Hee; Oh, Do-Youn; Im, Seock-Ah; Bang, Yung-Jue; Kim, Tae-You

    2007-01-01

    DNA methyltransferases (DNMT) 3B is a de novo DNMT that represses transcription independent of DNMT activity. In order to gain a better insight into DNMT3B-mediated transcriptional repression, we performed a yeast two-hybrid analysis using DNMT3B as a bait. Of the various binding candidates, ZHX1, a member of zinc-finger and homeobox protein, was found to interact with DNMT3B in vivo and in vitro. N-terminal PWWP domain of DNMT3B was required for its interaction with homeobox motifs of ZHX1. ZHX1 contains nuclear localization signal at C-terminal homeobox motif, and both ZHX1 and DNMT3B were co-localized in nucleus. Furthermore, we found that ZHX1 enhanced the transcriptional repression mediated by DNMT3B when DNMT3B is directly targeted to DNA. These results showed for First the direct linkage between DNMT and zinc-fingers homeoboxes protein, leading to enhanced gene silencing by DNMT3B

  19. Hypothalamic neurosecretory and circadian vasopressinergic neuronal systems in the blind cone-rod homeobox knock out mouse (Crx(-/-) ) and the 129sv wild type mouse

    DEFF Research Database (Denmark)

    Rovsing, Louise; Rath, Martin Fredensborg; Møller, Morten

    2013-01-01

    circadian AVP-rhythm. We have in this study of the brown 129sv mouse and the visual blind cone-rod homeobox gene knock out mouse (Crx(-/-) ) with degeneration of the retinal rods and cones, but a preserved non-image forming optic system, studied the temporal Avp-expression in both the neurosecretory...

  20. Export from Seagrass Meadows Contributes to Marine Carbon Sequestration

    KAUST Repository

    Duarte, Carlos M.; Krause-Jensen, Dorte

    2017-01-01

    Seagrasses export a substantial portion of their primary production, both in particulate and dissolved organic form, but the fate of this export production remains unaccounted for in terms of seagrass carbon sequestration. Here we review available evidence on the fate of seagrass carbon export to conclude that this represents a significant contribution to carbon sequestration, both in sediments outside seagrass meadows and in the deep sea. The evidence presented implies that the contribution of seagrass meadows to carbon sequestration has been underestimated by only including carbon burial within seagrass sediments.

  1. Export from Seagrass Meadows Contributes to Marine Carbon Sequestration

    KAUST Repository

    Duarte, Carlos M.

    2017-01-17

    Seagrasses export a substantial portion of their primary production, both in particulate and dissolved organic form, but the fate of this export production remains unaccounted for in terms of seagrass carbon sequestration. Here we review available evidence on the fate of seagrass carbon export to conclude that this represents a significant contribution to carbon sequestration, both in sediments outside seagrass meadows and in the deep sea. The evidence presented implies that the contribution of seagrass meadows to carbon sequestration has been underestimated by only including carbon burial within seagrass sediments.

  2. [Research methods of carbon sequestration by soil aggregates: a review].

    Science.gov (United States)

    Chen, Xiao-Xia; Liang, Ai-Zhen; Zhang, Xiao-Ping

    2012-07-01

    To increase soil organic carbon content is critical for maintaining soil fertility and agricultural sustainable development and for mitigating increased greenhouse gases and the effects of global climate change. Soil aggregates are the main components of soil, and have significant effects on soil physical and chemical properties. The physical protection of soil organic carbon by soil aggregates is the important mechanism of soil carbon sequestration. This paper reviewed the organic carbon sequestration by soil aggregates, and introduced the classic and current methods in studying the mechanisms of carbon sequestration by soil aggregates. The main problems and further research trends in this study field were also discussed.

  3. Sequestration and Distribution Characteristics of Cd(II by Microcystis aeruginosa and Its Role in Colony Formation

    Directory of Open Access Journals (Sweden)

    Xiangdong Bi

    2016-01-01

    Full Text Available To investigate the sequestration and distribution characteristics of Cd(II by Microcystis aeruginosa and its role in Microcystis colony formation, M. aeruginosa was exposed to six different Cd(II concentrations for 10 days. Cd(II exposure caused hormesis in the growth of M. aeruginosa. Low concentrations of Cd(II significantly induced formation of small Microcystis colonies (P93% of Cd(II was sequestrated in the groups with lower added concentrations of Cd(II. More than 80% of the sequestrated Cd(II was bioadsorbed by bEPS. The Pearson correlation coefficients of exterior and interior factors related to colony formation of M. aeruginosa revealed that Cd(II could stimulate the production of IPS and bEPS via increasing Cd(II bioaccumulation and bioadsorption. Increased levels of cross-linking between Cd(II and bEPS stimulated algal cell aggregation, which eventually promoted the formation of Microcystis colonies.

  4. Transcriptional activation of prostate specific homeobox gene NKX3-1 in subsets of T-cell lymphoblastic leukemia (T-ALL.

    Directory of Open Access Journals (Sweden)

    Stefan Nagel

    Full Text Available Homeobox genes encode transcription factors impacting key developmental processes including embryogenesis, organogenesis, and cell differentiation. Reflecting their tight transcriptional control, homeobox genes are often embedded in large non-coding, cis-regulatory regions, containing tissue specific elements. In T-cell acute lymphoblastic leukemia (T-ALL homeobox genes are frequently deregulated by chromosomal aberrations, notably translocations adding T-cell specific activatory elements. NKX3-1 is a prostate specific homeobox gene activated in T-ALL patients expressing oncogenic TAL1 or displaying immature T-cell characteristics. After investigating regulation of NKX3-1 in primary cells and cell lines, we report its ectopic expression in T-ALL cells independent of chromosomal rearrangements. Using siRNAs and expression profiling, we exploited NKX3-1 positive T-ALL cell lines as tools to investigate aberrant activatory mechanisms. Our data confirmed NKX3-1 activation by TAL1/GATA3/LMO and identified LYL1 as an alternative activator in immature T-ALL cells devoid of GATA3. Moreover, we showed that NKX3-1 is directly activated by early T-cell homeodomain factor MSX2. These activators were regulated by MLL and/or by IL7-, BMP4- and IGF2-signalling. Finally, we demonstrated homeobox gene SIX6 as a direct leukemic target of NKX3-1 in T-ALL. In conclusion, we identified three major mechanisms of NKX3-1 regulation in T-ALL cell lines which are represented by activators TAL1, LYL1 and MSX2, corresponding to particular T-ALL subtypes described in patients. These results may contribute to the understanding of leukemic transcriptional networks underlying disturbed T-cell differentiation in T-ALL.

  5. Carbon dioxide sequestration by mineral carbonation. Feasibility of enhanced natural weathering as a CO2 emission reduction technology

    International Nuclear Information System (INIS)

    Huijgen, W.J.J.

    2007-01-01

    A possible technology that can contribute to the reduction of carbon dioxide emissions is CO2 sequestration by mineral carbonation. The basic concept behind mineral CO2 sequestration is the mimicking of natural weathering processes in which calcium or magnesium containing minerals react with gaseous CO2 and form solid calcium or magnesium carbonates. Potential advantages of mineral CO2 sequestration compared to, e.g., geological CO2 storage include (1) the permanent and inherently safe sequestration of CO2, due to the thermodynamic stability of the carbonate product formed and (2) the vast potential sequestration capacity, because of the widespread and abundant occurrence of suitable feedstock. In addition, carbonation is an exothermic process, which potentially limits the overall energy consumption and costs of CO2 emission reduction. However, weathering processes are slow, with timescales at natural conditions of thousands to millions of years. For industrial implementation, a reduction of the reaction time to the order of minutes has to be achieved by developing alternative process routes. The aim of this thesis is an investigation of the technical, energetic, and economic feasibility of CO2 sequestration by mineral carbonation. In Chapter 1 the literature published on CO2 sequestration by mineral carbonation is reviewed. Among the potentially suitable mineral feedstock for mineral CO2 sequestration, Ca-silicates, more particularly wollastonite (CaSiO3), a mineral ore, and steel slag, an industrial alkaline solid residue, are selected for further research. Alkaline Ca-rich residues seem particularly promising, since these materials are inexpensive and available near large industrial point sources of CO2. In addition, residues tend to react relatively rapidly with CO2 due to their (geo)chemical instability. Various process routes have been proposed for mineral carbonation, which often include a pre-treatment of the solid feedstock (e.g., size reduction and

  6. Recovery Act: Geologic Sequestration Training and Research

    Energy Technology Data Exchange (ETDEWEB)

    Walsh, Peter; Esposito, Richard; Theodorou, Konstantinos; Hannon, Michael; Lamplugh, Aaron; Ellison, Kirk

    2013-06-30

    Work under the project entitled "Geologic Sequestration Training and Research," was performed by the University of Alabama at Birmingham and Southern Company from December 1, 2009, to June 30, 2013. The emphasis was on training of students and faculty through research on topics central to further development, demonstration, and commercialization of carbon capture, utilization, and storage (CCUS). The project had the following components: (1) establishment of a laboratory for measurement of rock properties, (2) evaluation of the sealing capacity of caprocks, (3) evaluation of porosity, permeability, and storage capacity of reservoirs, (4) simulation of CO{sub 2} migration and trapping in storage reservoirs and seepage through seal layers, (5) education and training of students through independent research on rock properties and reservoir simulation, and (6) development of an advanced undergraduate/graduate level course on coal combustion and gasification, climate change, and carbon sequestration. Four graduate students and one undergraduate student participated in the project. Two were awarded Ph.D. degrees for their work, the first in December 2010 and the second in August 2013. A third graduate student has proposed research on an advanced technique for measurement of porosity and permeability, and has been admitted to candidacy for the Ph.D. The fourth graduate student is preparing his proposal for research on CCUS and solid waste management. The undergraduate student performed experimental measurements on caprock and reservoir rock samples and received his B.S.M.E. degree in May 2012. The "Caprock Integrity Laboratory," established with support from the present project, is fully functional and equipped for measurement of porosity, permeability, minimum capillary displacement pressure, and effective permeability to gas in the presence of wetting phases. Measurements are made at ambient temperature and under reservoir conditions, including supercritical CO{sub 2

  7. Physical and Biological Regulation of Carbon Sequestration in Tidal Marshes

    Science.gov (United States)

    Morris, J. T.; Callaway, J.

    2017-12-01

    The rate of carbon sequestration in tidal marshes is regulated by complex feedbacks among biological and physical factors including the rate of sea-level rise (SLR), biomass production, tidal amplitude, and the concentration of suspended sediment. We used the Marsh Equilibrium Model (MEM) to explore the effects on C-sequestration across a wide range of permutations of these variables. C-sequestration increased with the rate of SLR to a maximum, then down to a vanishing point at higher SLR when marshes convert to mudflats. An acceleration in SLR will increase C-sequestration in marshes that can keep pace, but at high rates of SLR this is only possible with high biomass and suspended sediment concentrations. We found that there were no feasible solutions at SLR >13 mm/yr for permutations of variables that characterize the great majority of tidal marshes, i.e., the equilibrium elevation exists below the lower vertical limit for survival of marsh vegetation. The rate of SLR resulting in maximum C-sequestration varies with biomass production. C-sequestration rates at SLR=1 mm/yr averaged only 36 g C m-2 yr-1, but at the highest maximum biomass tested (5000 g/m2) the mean C-sequestration reached 399 g C m-2 yr-1 at SLR = 14 mm/yr. The empirical estimate of C-sequestration in a core dated 50-years overestimates the theoretical long-term rate by 34% for realistic values of decomposition rate and belowground production. The overestimate of the empirical method arises from the live and decaying biomass contained within the carbon inventory above the marker horizon, and overestimates were even greater for shorter surface cores.

  8. The biodiversity cost of carbon sequestration in tropical savanna

    OpenAIRE

    Abreu, Rodolfo C. R.; Hoffmann, William A.; Vasconcelos, Heraldo L.; Pilon, Natashi A.; Rossatto, Davi R.; Durigan, Giselda

    2017-01-01

    Tropical savannas have been increasingly viewed as an opportunity for carbon sequestration through fire suppression and afforestation, but insufficient attention has been given to the consequences for biodiversity. To evaluate the biodiversity costs of increasing carbon sequestration, we quantified changes in ecosystem carbon stocks and the associated changes in communities of plants and ants resulting from fire suppression in savannas of the Brazilian Cerrado, a global biodiversity hotspot. ...

  9. Torsed pulmonary sequestration presenting as a painful chest mass

    International Nuclear Information System (INIS)

    Shah, Ricki; Carver, Terrence W.; Rivard, Douglas C.

    2010-01-01

    Pulmonary sequestration is a congenital abnormality that can be divided into intralobar or extralobar types. Both types are characterized by pulmonary tissue that does not communicate with the bronchial tree or pulmonary arteries and typically has its arterial supply arising from the descending aorta. We report a case of an 11-year-old girl with extralobar sequestration who presented with torsion causing abdominal pain and pleuritic chest pain. (orig.)

  10. Photobiological hydrogen production and carbon dioxide sequestration

    Science.gov (United States)

    Berberoglu, Halil

    Photobiological hydrogen production is an alternative to thermochemical and electrolytic technologies with the advantage of carbon dioxide sequestration. However, it suffers from low solar to hydrogen energy conversion efficiency due to limited light transfer, mass transfer, and nutrient medium composition. The present study aims at addressing these limitations and can be divided in three parts: (1) experimental measurements of the radiation characteristics of hydrogen producing and carbon dioxide consuming microorganisms, (2) solar radiation transfer modeling and simulation in photobioreactors, and (3) parametric experiments of photobiological hydrogen production and carbon dioxide sequestration. First, solar radiation transfer in photobioreactors containing microorganisms and bubbles was modeled using the radiative transport equation (RTE) and solved using the modified method of characteristics. The study concluded that Beer-Lambert's law gives inaccurate results and anisotropic scattering must be accounted for to predict the local irradiance inside a photobioreactor. The need for accurate measurement of the complete set of radiation characteristics of microorganisms was established. Then, experimental setup and analysis methods for measuring the complete set of radiation characteristics of microorganisms have been developed and successfully validated experimentally. A database of the radiation characteristics of representative microorganisms have been created including the cyanobacteria Anabaena variabilis, the purple non-sulfur bacteria Rhodobacter sphaeroides and the green algae Chlamydomonas reinhardtii along with its three genetically engineered strains. This enabled, for the first time, quantitative assessment of the effect of genetic engineering on the radiation characteristics of microorganisms. In addition, a parametric experimental study has been performed to model the growth, CO2 consumption, and H 2 production of Anabaena variabilis as functions of

  11. Potential and economics of CO2 sequestration

    International Nuclear Information System (INIS)

    Jean-Baptiste, Ph.; Ciais, Ph.; Orr, J.

    2001-01-01

    Increasing atmospheric level of greenhouse gases are causing global warming and putting at risk the global climate system. The main anthropogenic greenhouse gas is CO 2 . Some techniques could be used to reduced CO 2 emission and stabilize atmospheric CO 2 concentration, including i) energy savings and energy efficiency, ii) switch to lower carbon content fuels (natural gas) and use energy sources with zero CO 2 emissions such as renewable or nuclear energy, iii) capture and store CO 2 from fossil fuels combustion, and enhance the natural sinks for CO 2 (forests, soils, ocean...). The purpose of this report is to provide an overview of the technology and cost for capture and storage of CO 2 and to review the various options for CO 2 sequestration by enhancing natural carbon sinks. Some of the factors which will influence application, including environmental impact, cost and efficiency, are discussed. Capturing CO 2 and storing it in underground geological reservoirs appears as the best environmentally acceptable option. It can be done with existing technology, however, substantial R and D is needed to improve available technology and to lower the cost. Applicable to large CO 2 emitting industrial facilities such as power plants, cement factories, steel industry, etc., which amount to about 30% of the global anthropic CO 2 emission, it represents a valuable tool in the baffle against global warming. About 50% of the anthropic CO 2 is being naturally absorbed by the biosphere and the ocean. The 'natural assistance' provided by these two large carbon reservoirs to the mitigation of climate change is substantial. The existing natural sinks could be enhanced by deliberate action. Given the known and likely environmental consequences, which could be very damaging indeed, enhancing ocean sinks does not appears as a satisfactory option. In contrast, the promotion of land sinks through demonstrated carbon-storing approach to agriculture, forests and land management could

  12. Overexpression of Indian hedgehog partially rescues short stature homeobox 2-overexpression-associated congenital dysplasia of the temporomandibular joint in mice.

    Science.gov (United States)

    Li, Xihai; Liang, Wenna; Ye, Hongzhi; Weng, Xiaping; Liu, Fayuan; Lin, Pingdong; Liu, Xianxiang

    2015-09-01

    The role of short stature homeobox 2 (shox2) in the development and homeostasis of the temporomandibular joint (TMJ) has been well documented. Shox2 is known to be expressed in the progenitor cells and perichondrium of the developing condyle. A previous study by our group reported that overexpression of shox2 leads to congenital dysplasia of the TMJ via downregulation of the Indian hedgehog (Ihh) signaling pathway, which is essential for embryonic disc primordium formation and mandibular condylar growth. To determine whether overexpression of Ihh may rescue the overexpression of shox2 leading to congenital dysplasia of the TMJ, a mouse model in which Ihh and shox2 were overexpressed (Wnt1-Cre; pMes-stop shox2; pMes-stop Ihh mice) was utilized to assess the consequences of this overexpression on TMJ development during post-natal life. The results showed that the developmental process and expression levels of runt-related transcription factor 2 and sex determining region Y-box 9 in the TMJ of the Wnt1-Cre; pMes-stop shox2; pMes-stop Ihh mice were similar to those in wild‑type mice. Overexpression of Ihh rescued shox2 overexpression-associated reduction of extracellular matrix components. However, overexpression of Ihh did not inhibit the shox2 overexpression-associated increase of matrix metalloproteinases (MMPs) MMP9, MMP13 and apoptosis in the TMJ. These combinatory cellular and molecular defects appeared to account for the observed congenital dysplasia of TMJ, suggesting that overexpression of Ihh partially rescued shox2 overexpression‑associated congenital dysplasia of the TMJ in mice.

  13. Overexpression of Indian hedgehog partially rescues short stature homeobox 2-overexpression-associated congenital dysplasia of the temporomandibular joint in mice

    Science.gov (United States)

    LI, XIHAI; LIANG, WENNA; YE, HONGZHI; WENG, XIAPING; LIU, FAYUAN; LIN, PINGDONG; LIU, XIANXIANG

    2015-01-01

    The role of short stature homeobox 2 (shox2) in the development and homeostasis of the temporomandibular joint (TMJ) has been well documented. Shox2 is known to be expressed in the progenitor cells and perichondrium of the developing condyle. A previous study by our group reported that overexpression of shox2 leads to congenital dysplasia of the TMJ via downregulation of the Indian hedgehog (Ihh) signaling pathway, which is essential for embryonic disc primordium formation and mandibular condylar growth. To determine whether overexpression of Ihh may rescue the overexpression of shox2 leading to congenital dysplasia of the TMJ, a mouse model in which Ihh and shox2 were overexpressed (Wnt1-Cre; pMes-stop shox2; pMes-stop Ihh mice) was utilized to assess the consequences of this overexpression on TMJ development during post-natal life. The results showed that the developmental process and expression levels of runt-related transcription factor 2 and sex determining region Y-box 9 in the TMJ of the Wnt1-Cre; pMes-stop shox2; pMes-stop Ihh mice were similar to those in wild-type mice. Overexpression of Ihh rescued shox2 overexpression-associated reduction of extracellular matrix components. However, overexpression of Ihh did not inhibit the shox2 overexpression-associated increase of matrix metalloproteinases (MMPs) MMP9, MMP13 and apoptosis in the TMJ. These combinatory cellular and molecular defects appeared to account for the observed congenital dysplasia of TMJ, suggesting that overexpression of Ihh partially rescued shox2 overexpression-associated congenital dysplasia of the TMJ in mice. PMID:26096903

  14. Msh homeobox 1 (Msx1)- and Msx2-overexpressing bone marrow-derived mesenchymal stem cells resemble blastema cells and enhance regeneration in mice.

    Science.gov (United States)

    Taghiyar, Leila; Hesaraki, Mahdi; Sayahpour, Forough Azam; Satarian, Leila; Hosseini, Samaneh; Aghdami, Naser; Baghaban Eslaminejad, Mohamadreza

    2017-06-23

    Amputation of the proximal region in mammals is not followed by regeneration because blastema cells (BCs) and expression of regenerative genes, such as Msh homeobox ( Msx ) genes, are absent in this animal group. The lack of BCs and positional information in other cells is therefore the main obstacle to therapeutic approaches for limb regeneration. Hence, this study aimed to create blastema-like cells (BlCs) by overexpressing Msx1 and Msx2 genes in mouse bone marrow-derived mesenchymal stem cells (mBMSCs) to regenerate a proximally amputated digit tip. We transduced mBMSCs with Msx1 and Msx2 genes and compared osteogenic activity and expression levels of several Msx -regulated genes ( Bmp4 , Fgf8 , and keratin 14 ( K14 )) in BlC groups, including MSX1, MSX2, and MSX1/2 (in a 1:1 ratio) with those in mBMSCs and BCs in vitro and in vivo following injection into the amputation site. We found that Msx gene overexpression increased expression of specific blastemal markers and enhanced the proliferation rate and osteogenesis of BlCs compared with mBMSCs and BCs via activation of Fgf8 and Bmp4 Histological analyses indicated full regrowth of digit tips in the Msx -overexpressing groups, particularly in MSX1/2, through endochondral ossification 6 weeks post-injection. In contrast, mBMSCs and BCs formed abnormal bone and nail. Full digit tip was regenerated only in the MSX1/2 group and was related to boosted Bmp4, Fgf8 , and K14 gene expression and to limb-patterning properties resulting from Msx1 and Msx2 overexpression. We propose that Msx -transduced cells that can regenerate epithelial and mesenchymal tissues may potentially be utilized in limb regeneration. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

  15. An equivalence factor between CO2 avoided emissions and sequestration. Description and applications in forestry

    International Nuclear Information System (INIS)

    Costa, P.M.; Wilson, C.

    2000-01-01

    Concern about the issue of permanence and reversibility of the effects of carbon sequestration has led to the need to devise accounting methods that quantify the temporal value of storing carbon that has been actively sequestered or removed from the atmosphere, as compared to carbon stored as a result of activities taken to avoid emissions. This paper describes a method for accounting for the atmospheric effects of sequestration-based land-use projects in relation to the duration of carbon storage. Firstly, the time period over which sequestered carbon should be stored in order to counteract the radiative forcing effect of carbon emissions was calculated, based on the residence time and decay pattern of atmospheric CO2, its Absolute Global Warming Potential. This time period was called the equivalence time, and was calculated to be approximately 55 years. From this equivalence time, the effect of storage of 1 t CO2 for 1 year was derived, and found to be similar to preventing the effect of the emission of 0.0182 t CO2. Potential applications of this tonne.year figure, here called the equivalence factor, are then discussed in relation to the estimation of atmospheric benefits over time of sequestration-based land use projects. 15 refs

  16. Modeling of carbon sequestration in coal-beds: A variable saturated simulation

    International Nuclear Information System (INIS)

    Liu Guoxiang; Smirnov, Andrei V.

    2008-01-01

    Storage of carbon dioxide in deep coal seams is a profitable method to reduce the concentration of green house gases in the atmosphere while the methane as a byproduct can be extracted during carbon dioxide injection into the coal seam. In this procedure, the key element is to keep carbon dioxide in the coal seam without escaping for a long term. It is depended on many factors such as properties of coal basin, fracture state, phase equilibrium, etc., especially the porosity, permeability and saturation of the coal seam. In this paper, a variable saturation model was developed to predict the capacity of carbon dioxide sequestration and coal-bed methane recovery. This variable saturation model can be used to track the saturation variability with the partial pressures change caused by carbon dioxide injection. Saturation variability is a key factor to predict the capacity of carbon dioxide storage and methane recovery. Based on this variable saturation model, a set of related variables including capillary pressure, relative permeability, porosity, coupled adsorption model, concentration and temperature equations were solved. From results of the simulation, historical data agree with the variable saturation model as well as the adsorption model constructed by Langmuir equations. The Appalachian basin, as an example, modeled the carbon dioxide sequestration in this paper. The results of the study and the developed models can provide the projections for the CO 2 sequestration and methane recovery in coal-beds within different regional specifics

  17. Terrestrial Carbon Sequestration: Analysis of Terrestrial Carbon Sequestration at Three Contaminated Sites Remediated and Revitalized with Soil Amendments

    Science.gov (United States)

    This paper provides EPA's analysis of the data to determine carbon sequestration rates at three diverse sites that differ in geography/location, weather, soil properties, type of contamination, and age.

  18. CO{sub 2} sequestration technologies

    Energy Technology Data Exchange (ETDEWEB)

    Ketzer, Marcelo [Brazilian Carbon Storage Research Center (Brazil)

    2008-07-15

    In this presentation the importance of the capture and sequestration of CO{sub 2} is outlined for the reduction of gas discharges of greenhouse effect; then the principles of CO{sub 2} storage in geologic formations are reviewed; afterwards, the analogs for the CO{sub 2} storage are commented, such as the storage of the acid gas, the natural gas storage and the natural CO{sub 2} deposits. Also it is spoken on the CO{sub 2} storage in coal, in water-bearing saline deposits and in oil fields, and finally the subject of the safety and monitoring of the CO{sub 2} storage is reviewed. [Spanish] En esta presentacion se expone la importancia de la captura y secuestro de CO{sub 2} para la reduccion de emisiones de gases de efecto invernadero; luego se tratan los principios de almacenamiento de CO{sub 2} en formaciones geologicas; despues se comentan los analogos para el almacenamiento de CO{sub 2} como el almacenamiento del gas acido, el almacenamiento de gas natural y los yacimientos naturales de CO{sub 2}. Tambien se habla sobre el almacenamiento de CO{sub 2} en carbon, acuiferos salinos y yacimientos petroliferos y por ultimo se toca el tema de la seguridad y monitoreo del almacenamiento de CO{sub 2}.

  19. Carbon sequestration R&D overview

    Energy Technology Data Exchange (ETDEWEB)

    Swift, Justine [Office of Fossil Energy, U.S. Department of Energy (United States)

    2008-07-15

    In this presentation the author discusses over the technological options for the handling of carbon. He shows the objectives and challenges of the program of carbon sequestration of the Department of Energy of the United States, as well as a table with the annual CO{sub 2} emissions in the United States; a graph with the world-wide capacity of CO{sub 2} geologic storage and a listing with the existing projects of CCS at the moment in the world. [Spanish] En esta presentacion el autor platica sobre las opciones tecnologicas para el manejo del carbono. Muestra los objetivos y retos del programa de secuestro de carbono del Departamento de Energia de los Estados Unidos, asi como una tabla con las emisiones anuales de CO{sub 2} en los Estados Unidos; un grafico con la capacidad mundial de almacenamiento de CO{sub 2} en el subsuelo y un listado con los proyectos de CCS existentes actualmente en el mundo.

  20. Natural CO2 Analogs for Carbon Sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Scott H. Stevens; B. Scott Tye

    2005-07-31

    The report summarizes research conducted at three naturally occurring geologic CO{sub 2} fields in the US. The fields are natural analogs useful for the design of engineered long-term storage of anthropogenic CO{sub 2} in geologic formations. Geologic, engineering, and operational databases were developed for McElmo Dome in Colorado; St. Johns Dome in Arizona and New Mexico; and Jackson Dome in Mississippi. The three study sites stored a total of 2.4 billion t (46 Tcf) of CO{sub 2} equivalent to 1.5 years of power plant emissions in the US and comparable in size with the largest proposed sequestration projects. The three CO{sub 2} fields offer a scientifically useful range of contrasting geologic settings (carbonate vs. sandstone reservoir; supercritical vs. free gas state; normally pressured vs. overpressured), as well as different stages of commercial development (mostly undeveloped to mature). The current study relied mainly on existing data provided by the CO{sub 2} field operator partners, augmented with new geochemical data. Additional study at these unique natural CO{sub 2} accumulations could further help guide the development of safe and cost-effective design and operation methods for engineered CO{sub 2} storage sites.

  1. Carbon Capture and Sequestration- A Review

    Science.gov (United States)

    Sood, Akash; Vyas, Savita

    2017-08-01

    The Drastic increase of CO2 emission in the last 30 years is due to the combustion of fossil fuels and it causes a major change in the environment such as global warming. In India, the emission of fossil fuels is developed in the recent years. The alternate energy sources are not sufficient to meet the values of this emission reduction and the framework of climate change demands the emission reduction, the CCS technology can be used as a mitigation tool which evaluates the feasibility for implementation of this technology in India. CCS is a process to capture the carbon dioxide from large sources like fossil fuel station to avoid the entrance of CO2 in the atmosphere. IPCC accredited this technology and its path for mitigation for the developing countries. In this paper, we present the technologies of CCS with its development and external factors. The main goal of this process is to avoid the release the CO2 into the atmosphere and also investigates the sequestration and mitigation technologies of carbon.

  2. Alliance for Sequestration Training, Outreach, Research & Education

    Energy Technology Data Exchange (ETDEWEB)

    Olson, Hilary [Univ. of Texas, Austin, TX (United States). Inst. for Geophysics Jackson School of Geosciences

    2013-12-31

    The Sequestration Training, Outreach, Research and Education (STORE) Alliance at The University of Texas at Austin completed its activity under Department of Energy Funding (DE-FE0002254) on September 1, 2013. The program began as a partnership between the Institute for Geophysics, the Bureau of Economic Geology and the Petroleum and Geosystems Engineering Department at UT. The initial vision of the program was to promote better understanding of CO2 utilization and storage science and engineering technology through programs and opportunities centered on training, outreach, research and technology transfer, and education. With over 8,000 hrs of formal training and education (and almost 4,500 of those hours awarded as continuing education credits) to almost 1,100 people, STORE programs and activities have provided benefits to the Carbon Storage Program of the Department of Energy by helping to build a skilled workforce for the future CCS and larger energy industry, and fostering scientific public literacy needed to continue the U.S. leadership position in climate change mitigation and energy technologies and application. Now in sustaining mode, the program is housed at the Center for Petroleum and Geosystems Engineering, and benefits from partnerships with the Gulf Coast Carbon Center, TOPCORP and other programs at the university receiving industry funding.

  3. Estimating Values of Carbon Sequestration and Nutrient Recycling in Forests: An Application to the Stockholm-Mälar Region in Sweden

    Directory of Open Access Journals (Sweden)

    Ing-Marie Gren

    2015-10-01

    Full Text Available We calculate values of forest carbon sequestration and nutrient recycling applying the replacement cost method. The value is then determined as the savings in costs by the replacement of more expensive abatement measures with these ecosystem services in cost-effective climate and nutrient programs. To this end, a dynamic optimization model is constructed, which accounts for uncertainty in sequestration. It is applied to the Stockholm-Mälar region in southeast Sweden where the EU 2050 climate policy for carbon emissions and the Baltic Sea action plan for nutrient discharges are applied. The results show that the value of carbon and nutrient sequestration can correspond to approximately 0.5% of the region’s gross domestic product, or 40% of the value of productive forest. The largest part of this value is attributed to carbon sequestration because of the relative stringency in targets and expensive alternative abatement measures. However, sequestration is uncertain because of stochastic weather conditions, and when society has a large risk aversion for not attaining climate and nutrient targets, the values of the forest carbon and nutrient sequestration can approach zero.

  4. Making carbon dioxide sequestration feasible: Toward federal regulation of CO2 sequestration pipelines

    International Nuclear Information System (INIS)

    Mack, Joel; Endemann, Buck

    2010-01-01

    As the United States moves closer to a national climate change policy, it will have to focus on a variety of factors affecting the manner in which the country moves toward a future with a substantially lower carbon footprint. In addition to encouraging renewable energy, smart grid, clean fuels and other technologies, the United States will need to make substantial infrastructure investments in a variety of industries. Among the significant contributors to the current carbon footprint in the United States is the use of coal as a major fuel for the generation of electricity. One of the most important technologies that the United States can employ to reduce its carbon footprint is to sequester the carbon dioxide ('CO 2 ') from coal-fired power plants. This article focuses on the legal and policy issues surrounding a critical piece of the necessary sequestration infrastructure: CO 2 pipelines that will carry CO 2 from where it is removed from fuel or waste gas streams to where it will be sequestered. Ultimately, this article recommends developing a federally regulated CO 2 pipeline program to foster the implementation of carbon sequestration technology.

  5. CO2 sequestration in two mediterranean dune areas subjected to a different level of anthropogenic disturbance

    Science.gov (United States)

    Bonito, Andrea; Ricotta, Carlo; Iberite, Mauro; Gratani, Loretta; Varone, Laura

    2017-09-01

    Coastal sand dunes are among the most threatened habitats, especially in the Mediterranean Basin, where the high levels of human pressure impair the presence of plant species, putting at risk the maintenance of the ecosystem services, such as CO2 sequestration provided by these habitats. The aim of this study was to analyze how disturbance-induced changes in plant species abundance patterns account for variations in annual CO2 sequestration flow (CS) of Mediterranean sand dune areas. Two sites characterized by a high (site HAD) and a lower (site LAD) anthropogenic disturbance level were selected. At both sites, plant species number, cover, height and CS based on net photosynthesis measurements were sampled. At the plant species level, our results highlighted that Ammophila arenaria and Pancratium maritimum, had a key role in CS. Moreover, the results revealed a patchy species assemblage in both sites. In particular, HAD was characterized by a higher extension of the anthropogenic aphytoic zone (64% of the total transect length) than LAD. In spite of the observed differences in plant species composition, there were not significant differences between HAD and LAD in structural and functional traits, such as plant height and net photosynthesis. As a consequence, HAD and LAD had a similar CS (443 and 421 Mg CO2 ha-1 y-1, respectively). From a monetary point of view, our estimates based on the social costs of carbon revealed that the flow of sequestered CO2 valued on an average 3181 ± 114 ha-1 year-1 (mean value for the two sites). However, considering also the value of the CO2 negative flow related to loss of vegetated area, the annual net benefit arising from CO2 sequestration amounted to 1641 and 1772 for HAD and LAD, respectively. Overall, the results highlighted the importance to maximize the efforts to preserve dune habitats by applying an effective management policy, which could allow maintaining also a regulatory ecosystem service such as CO2 sequestration.

  6. FEASIBILITY OF LARGE-SCALE OCEAN CO2 SEQUESTRATION

    Energy Technology Data Exchange (ETDEWEB)

    Dr. Peter Brewer; Dr. James Barry

    2002-09-30

    We have continued to carry out creative small-scale experiments in the deep ocean to investigate the science underlying questions of possible future large-scale deep-ocean CO{sub 2} sequestration as a means of ameliorating greenhouse gas growth rates in the atmosphere. This project is closely linked to additional research funded by the DoE Office of Science, and to support from the Monterey Bay Aquarium Research Institute. The listing of project achievements here over the past year reflects these combined resources. Within the last project year we have: (1) Published a significant workshop report (58 pages) entitled ''Direct Ocean Sequestration Expert's Workshop'', based upon a meeting held at MBARI in 2001. The report is available both in hard copy, and on the NETL web site. (2) Carried out three major, deep ocean, (3600m) cruises to examine the physical chemistry, and biological consequences, of several liter quantities released on the ocean floor. (3) Carried out two successful short cruises in collaboration with Dr. Izuo Aya and colleagues (NMRI, Osaka, Japan) to examine the fate of cold (-55 C) CO{sub 2} released at relatively shallow ocean depth. (4) Carried out two short cruises in collaboration with Dr. Costas Tsouris, ORNL, to field test an injection nozzle designed to transform liquid CO{sub 2} into a hydrate slurry at {approx}1000m depth. (5) In collaboration with Prof. Jill Pasteris (Washington University) we have successfully accomplished the first field test of a deep ocean laser Raman spectrometer for probing in situ the physical chemistry of the CO{sub 2} system. (6) Submitted the first major paper on biological impacts as determined from our field studies. (7) Submitted a paper on our measurements of the fate of a rising stream of liquid CO{sub 2} droplets to Environmental Science & Technology. (8) Have had accepted for publication in Eos the first brief account of the laser Raman spectrometer success. (9) Have had two

  7. Translating National Level Forest Service Goals to Local Level Land Management: Carbon Sequestration

    Science.gov (United States)

    McNulty, S.; Treasure, E.

    2017-12-01

    The USDA Forest Service has many national level policies related to multiple use management. However, translating national policy to stand level forest management can be difficult. As an example of how a national policy can be put into action, we examined three case studies in which a desired future condition is evaluated at the national, region and local scale. We chose to use carbon sequestration as the desired future condition because climate change has become a major area of concern during the last decade. Several studies have determined that the 193 million acres of US national forest land currently sequester 11% to 15% of the total carbon emitted as a nation. This paper provides a framework by which national scale strategies for maintaining or enhancing forest carbon sequestration is translated through regional considerations and local constraints in adaptive management practices. Although this framework used the carbon sequestration as a case study, this framework could be used with other national level priorities such as the National Environmental Protection Act (NEPA) or the Endangered Species Act (ESA).

  8. Accounting for Organic Carbon Change in Deep Soil Altered Carbon Sequestration Efficiency

    Science.gov (United States)

    Li, J.; Liang, F.; Xu, M.; Huang, S.

    2017-12-01

    Study on soil organic carbon (SOC) sequestration under fertilization practices in croplands lacks information of soil C change at depth lower than plow layer (i.e. 20 30-cm). By synthesizing long-term datasets of fertilization experiments in four typical Chinese croplands representing black soil at Gongzhuling(GZL), aquatic Chao soil at Zhengzhou(ZZ), red soil at Qiyang(QY) and purple soil at Chongqing(CQ) city, we calculated changes in SOC storage relative to initial condition (ΔSOC) in 0-20cm and 0-60cm, organic C inputs (OC) from the stubble, roots and manure amendment, and C sequestration efficiency (CSE: the ratio of ΔSOC over OC) in 0-20cm and 0-60cm. The fertilization treatments include cropping with no fertilization (CK), chemical nitrogen, phosphorus and potassium fertilizers (NPK) and combined chemical fertilizers and manure (NPKM). Results showed SOC storage generally decreased with soil depth (i.e. 0-20 > 20-40, 40-60 cm) and increased with fertilizations (i.e. initial fertilizations, soil at depth (>20cm) can act as important soil carbon sinks in intrinsically high fertility soils (i.e. black soil) but less likely at poor fertility soil (i.e. aquatic Chao soil). It thus informs the need to account for C change in deep soils for estimating soil C sequestration capacity particularly with indigenously fertile cropland soils.

  9. Carbon Sequestration in Tidal Salt Marshes of the Northeast United States.

    Science.gov (United States)

    Drake, Katherine; Halifax, Holly; Adamowicz, Susan C; Craft, Christopher

    2015-10-01

    Tidal salt marshes provide important ecological services, habitat, disturbance regulation, water quality improvement, and biodiversity, as well as accumulation and sequestration of carbon dioxide (CO2) in vegetation and soil organic matter. Different management practices may alter their capacity to provide these ecosystem services. We examined soil properties (bulk density, percent organic C, percent N), C and N pools, C sequestration and N accumulation at four marshes managed with open marsh water management (OMWM) and four marshes that were not at U.S. Fish and Wildlife National Wildlife Refuges (NWRs) on the East Coast of the United States. Soil properties (bulk density, percent organic C, percent N) exhibited no consistent differences among managed and non-OMWM marshes. Soil organic carbon pools (0-60-cm depth) also did not differ. Managed marshes contained 15.9 kg C/m(2) compared to 16.2 kg C/m(2) in non-OMWM marshes. Proportionately, more C (per unit volume) was stored in surface than in subsurface soils. The rate of C sequestration, based on (137)Cs and (210)Pb dating of soil cores, ranged from 41 to 152 g/m(2)/year. Because of the low emissions of CH4 from salt marshes relative to freshwater wetlands and the ability to sequester C in soil, protection and restoration of salt marshes can be a vital tool for delivering key ecosystem services, while at the same time, reducing the C footprint associated with managing these wetlands.

  10. Vegetation carbon sequestration in Chinese forests from 2010 to 2050.

    Science.gov (United States)

    He, Nianpeng; Wen, Ding; Zhu, Jianxing; Tang, Xuli; Xu, Li; Zhang, Li; Hu, Huifeng; Huang, Mei; Yu, Guirui

    2017-04-01

    Forests store a large part of the terrestrial vegetation carbon (C) and have high C sequestration potential. Here, we developed a new forest C sequestration (FCS) model based on the secondary succession theory, to estimate vegetation C sequestration capacity in China's forest vegetation. The model used the field measurement data of 3161 forest plots and three future climate scenarios. The results showed that logistic equations provided a good fit for vegetation biomass with forest age in natural and planted forests. The FCS model has been verified with forest biomass data, and model uncertainty is discussed. The increment of vegetation C storage in China's forest vegetation from 2010 to 2050 was estimated as 13.92 Pg C, while the average vegetation C sequestration rate was 0.34 Pg C yr -1 with a 95% confidence interval of 0.28-0.42 Pg C yr -1 , which differed significantly between forest types. The largest contributor to the increment was deciduous broadleaf forest (37.8%), while the smallest was deciduous needleleaf forest (2.7%). The vegetation C sequestration rate might reach its maximum around 2020, although vegetation C storage increases continually. It is estimated that vegetation C sequestration might offset 6-8% of China's future emissions. Furthermore, there was a significant negative relationship between vegetation C sequestration rate and C emission rate in different provinces of China, suggesting that developed provinces might need to compensate for undeveloped provinces through C trade. Our findings will provide valuable guidelines to policymakers for designing afforestation strategies and forest C trade in China. © 2016 John Wiley & Sons Ltd.

  11. ECONOMIC EVALUATION OF CO2 SEQUESTRATION TECHNOLOGIES; SEMIANNUAL

    International Nuclear Information System (INIS)

    Bert R. Bock; Richard G. Rhudy; David E. Nichols

    2001-01-01

    In order to plan for potential CO(sub 2) mitigation mandates, utilities need better information on CO(sub 2) mitigation options, especially carbon sequestration options that involve non-utility operations. One of the major difficulties in evaluating CO(sub 2) sequestration technologies and practices, both geologic storage of captured CO(sub 2) and storage in biological sinks, is obtaining consistent, transparent, accurate, and comparable economics. This project is comparing the economics of major technologies and practices under development for CO(sub 2) sequestration, including captured CO(sub 2) storage options such as active oil reservoirs, depleted oil and gas reservoirs, deep aquifers, coal beds, and oceans, as well as the enhancement of biological sinks such as forests and croplands. An international group of experts has been assembled to compare on a consistent basis the economics of this diverse array of CO(sub 2) sequestration options. Designs and data collection are nearly complete for each of the CO(sub 2) sequestration options being compared. Initial spreadsheet development has begun on concepts involving storage of captured CO(sub 2). No significant problems have been encountered, but some additional outside expertise will be accessed to supplement the team's expertise in the areas of life cycle analysis, oil and gas exploration and production, and comparing CO(sub 2) sequestration options that differ in timing and permanence of CO(sub 2) sequestration. Plans for the next reporting period are to complete data collection and a first approximation of the spreadsheet. We expect to complete this project on time and on budget

  12. Carbon sequestration by young Norway spruce monoculture

    Science.gov (United States)

    Pokorny, R.; Rajsnerova, P.; Kubásek, J.

    2012-04-01

    Many studies have been focused on allometry, wood-mass inventory, carbon (C) sequestration, and biomass expansion factors as the first step for the evaluation of C sinks of different plant ecosystems. To identify and quantify these terrestrial C sinks, and evaluate CO2 human-induced emissions on the other hand, information for C balance accounting (for impletion of commitment to Kyoto protocol) are currently highly needed. Temperate forest ecosystems have recently been identified as important C sink. Carbon sink might be associated with environmental changes (elevated [CO2], air temperature, N deposition etc.) and large areas of managed fast-growing young forests. Norway spruce (Pice abies L. Karst) is the dominant tree species (35%) in Central European forests. It covers 55 % of the total forested area in the Czech Republic, mostly at high altitudes. In this contribution we present C sequestration by young (30-35 year-old) Norway spruce monocultures in highland (650-700 m a.s.l., AT- mean annual temperature: 6.9 ° C; P- annual amount of precipitation: 700 mm; GL- growing season duration: 150 days) and mountain (850-900 m a.s.l.; AT of 5.5 ° C; P of 1300 mm; and GL of 120 days) areas and an effect of a different type of thinning. However, the similar stem diameter at the breast height and biomass proportions among above-ground tree organs were obtained in the both localities; the trees highly differ in their height, above-ground organ's biomass values and total above ground biomass, particularly in stem. On the total mean tree biomass needle, branch and stem biomass participated by 22 %, 24 % and 54 % in highland, and by 19 %, 23 % and 58 % in mountain area, respectively. Silvicultural management affects mainly structure, density, and tree species composition of the stand. Therefore, dendrometric parameters of a tree resulted from genotype, growth conditions and from management history as well. Low type of thinning (LT; common in highland) stimulates rather tree

  13. Carbon dioxide sequestration in oil sands tailings streams

    Energy Technology Data Exchange (ETDEWEB)

    Mikula, R.; Afara, M.; Namsechi, B.; Demko, B.; Wong, P. [Natural Resources Canada, Devon, AB (Canada). CANMET Western Research Centre

    2010-07-01

    This PowerPoint presentation discussed the use of carbon dioxide (CO{sub 2}) as an oil sands tailings process aid and investigated its role in maximizing recycle water availability by rapid consolidation of the transition zone. The potential for CO{sub 2} sequestration was also investigated. CO{sub 2} composite tailings (CT) pilot plants were discussed and the results of cylinder tests and water chemistry analyses were presented. Issues related to physical entrapment, ionic trapping, and mineral trapping were discussed. The study showed that carbonic acid lowers pH, dissolving calcite and dolomite. Aluminum hydroxide groups on the clay surface reacted to produce water and Al{sup 3+} and Na+. Increased bicarbonate and calcium resulted in precipitated calcite. The reduction of a transition zone from 6 to 3 meters increased the available recycle water by 15 mm{sup 3} in a 5 km{sup 2} recycle water pond. Optimum CO{sub 2} additions to whole tailings are now being investigated. tabs., figs.

  14. The economics of soil C sequestration and agricultural emissions abatement

    Science.gov (United States)

    Alexander, P.; Paustian, K.; Smith, P.; Moran, D.

    2015-04-01

    Carbon is a critical component of soil vitality and is crucial to our ability to produce food. Carbon sequestered in soils also provides a further regulating ecosystem service, valued as the avoided damage from global climate change. We consider the demand and supply attributes that underpin and constrain the emergence of a market value for this vital global ecosystem service: markets being what economists regard as the most efficient institutions for allocating scarce resources to the supply and consumption of valuable goods. This paper considers how a potentially large global supply of soil carbon sequestration is reduced by economic and behavioural constraints that impinge on the emergence of markets, and alternative public policies that can efficiently transact demand for the service from private and public sector agents. In essence, this is a case of significant market failure. In the design of alternative policy options, we consider whether soil carbon mitigation is actually cost-effective relative to other measures in agriculture and elsewhere in the economy, and the nature of behavioural incentives that hinder policy options. We suggest that reducing the cost and uncertainties of mitigation through soil-based measures is crucial for improving uptake. Monitoring and auditing processes will also be required to eventually facilitate wide-scale adoption of these measures.

  15. Carbon Capture and Sequestration: A Regulatory Gap Assessment

    Energy Technology Data Exchange (ETDEWEB)

    Lincoln Davies; Kirsten Uchitel; John Ruple; Heather Tanana

    2012-04-30

    Though a potentially significant climate change mitigation strategy, carbon capture and sequestration (CCS) remains mired in demonstration and development rather than proceeding to full-scale commercialization. Prior studies have suggested numerous reasons for this stagnation. This Report seeks to empirically assess those claims. Using an anonymous opinion survey completed by over 200 individuals involved in CCS, it concludes that there are four primary barriers to CCS commercialization: (1) cost, (2) lack of a carbon price, (3) liability risks, and (4) lack of a comprehensive regulatory regime. These results largely confirm previous work. They also, however, expose a key barrier that prior studies have overlooked: the need for comprehensive, rather than piecemeal, CCS regulation. The survey data clearly show that the CCS community sees this as one of the most needed incentives for CCS deployment. The community also has a relatively clear idea of what that regulation should entail: a cooperative federalism approach that directly addresses liability concerns and that generally does not upset traditional lines of federal-state authority.

  16. Treatment for unstable pulmonary sequestration injury in patient with severe blunt trauma: A case report.

    Science.gov (United States)

    Hiraki, Sakiko; Okada, Yohei; Arai, Yusuke; Ishii, Wataru; Iiduka, Ryoji

    2017-08-01

    Pulmonary sequestration is a congenital malformation characterized by nonfunctioning tissue not communicating with the tracheobronchial tree. As the blood pressure in the artery feeding the sequestrated lung tissue is higher than that in the normal pulmonary artery, the risk of massive hemorrhage in pulmonary sequestration is high. We herein present the first case of a severe blunt trauma patient with unstable pulmonary sequestration injury. The mechanism of pulmonary sequestration injury is vastly different than that of injury to normal lung. We suggest that proximal feeding artery embolization should be performed before surgical intervention in patients with massive hemorrhage of pulmonary sequestration due to severe chest trauma.

  17. Pulmonary sequestration: diagnosis with three dimensional reconstruction using spiral CT

    International Nuclear Information System (INIS)

    Nie Yongkang; Zhao Shaohong; Cai Zulong; Yang Li; Zhao Hong; Zhang Ailian; Huang Hui

    2003-01-01

    Objective: To evaluate the role of three dimensional (3D) reconstruction using spiral CT in the diagnosis of pulmonary sequestration. Methods: Ten patients with pulmonary sequestration were analyzed. The diagnoses were confirmed by angiography in 2 patients, by operation in 2 patients, and by CT angiography in 6 patients. All patients were examined with Philips SR 7000 or GE Lightspeed Plus scanner. CT images were transferred to a workstation and 3D reconstruction was performed. All images were reviewed and analyzed by two radiologists. Results: Among 10 patients, the pulmonary sequestration was in the right lower lobe in 1 patient and in the left lower lobe in 9 patients. Anomalous systemic arteries originated from thoracic aorta in 8 patients and from celiac artery in 2 patients. On plain CT scan, there were 4 patients with patchy opacities, 3 patients with hilar mass accompanying vascular engorgement and profusion in adjacent parenchyma, 2 patients with finger-like appendage surrounded by hyper-inflated lung, and 1 patient with lung mass-like lesion. Enhanced CT revealed anomalous systemic arteries in 9 patients and drainage vein in 7 patients. Maximum intensity projection (MIP) and curvilinear reconstruction could depict the abnormal systemic artery and drainage vein in sequestration. Surface shadow display (SSD) and volume rendering (VR) could delineate the anomalous systemic artery. Conclusion: 3D reconstruction with enhanced spiral CT can depict anomalous systemic artery and drainage vein and it is the first method of choice in diagnosing pulmonary sequestration

  18. Biologically Enhanced Carbon Sequestration: Research Needs and Opportunities

    Energy Technology Data Exchange (ETDEWEB)

    Oldenburg, Curtis; Oldenburg, Curtis M.; Torn, Margaret S.

    2008-03-21

    Fossil fuel combustion, deforestation, and biomass burning are the dominant contributors to increasing atmospheric carbon dioxide (CO{sub 2}) concentrations and global warming. Many approaches to mitigating CO{sub 2} emissions are being pursued, and among the most promising are terrestrial and geologic carbon sequestration. Recent advances in ecology and microbial biology offer promising new possibilities for enhancing terrestrial and geologic carbon sequestration. A workshop was held October 29, 2007, at Lawrence Berkeley National Laboratory (LBNL) on Biologically Enhanced Carbon Sequestration (BECS). The workshop participants (approximately 30 scientists from California, Illinois, Oregon, Montana, and New Mexico) developed a prioritized list of research needed to make progress in the development of biological enhancements to improve terrestrial and geologic carbon sequestration. The workshop participants also identified a number of areas of supporting science that are critical to making progress in the fundamental research areas. The purpose of this position paper is to summarize and elaborate upon the findings of the workshop. The paper considers terrestrial and geologic carbon sequestration separately. First, we present a summary in outline form of the research roadmaps for terrestrial and geologic BECS. This outline is elaborated upon in the narrative sections that follow. The narrative sections start with the focused research priorities in each area followed by critical supporting science for biological enhancements as prioritized during the workshop. Finally, Table 1 summarizes the potential significance or 'materiality' of advances in these areas for reducing net greenhouse gas emissions.

  19. [Seagrass ecosystems: contributions to and mechanisms of carbon sequestration].

    Science.gov (United States)

    Qiu, Guang-Long; Lin, Hsing-Juh; Li, Zong-Shan; Fan, Hang-Qing; Zhou, Hao-Lang; Liu, Guo-Hua

    2014-06-01

    The ocean's vegetated habitats, in particular seagrasses, mangroves and salt marshes, each capture and store a comparable amount of carbon per year, forming the Earth's blue carbon sinks, the most intense carbon sinks on the planet. Seagrass meadows, characterized by high primary productivity, efficient water column filtration and sediment stability, have a pronounced capacity for carbon sequestration. This is enhanced by low decomposition rates in anaerobic seagrass sediments. The carbon captured by seagrass meadows contributes significantly to the total blue carbon. At a global scale, seagrass ecosystems are carbon sink hot spots and have profound influences on the global carbon cycle. This importance combined with the many other functions of seagrass meadows places them among the most valuable ecosystems in the world. Unfortunately, seagrasses are declining globally at an alarming rate owing to anthropogenic disturbances and climate change, making them also among the most threatened ecosystems on the Earth. The role of coastal systems in carbon sequestration has received far too little attention and thus there are still many uncertainties in evaluating carbon sequestration of global seagrass meadows accurately. To better assess the carbon sequestration of global seagrass ecosystems, a number of scientific issues should be considered with high priorities: 1) more accurate measurements of seagrass coverage at national and global levels; 2) more comprehensive research into species- and location-specific carbon sequestration efficiencies; 3) in-depth exploration of the effects of human disturbance and global climate change on carbon capture and storage by seagrass ecosystems.

  20. Smad4-dependent suppressor pituitary homeobox 2 promotes PPP2R2A-mediated inhibition of Akt pathway in pancreatic cancer

    OpenAIRE

    Wang, Qi; Li, Juanjuan; Wu, Wei; Shen, Ruizhe; Jiang, He; Qian, Yuting; Tang, Yanping; Bai, Tingting; Wu, Sheng; Wei, Lumin; Zang, Yi; Zhang, Ji; Wang, Lifu

    2016-01-01

    The importance of Pituitary homeobox 2 (Pitx2) in malignancy remains enigmatic, and Pitx2 has not been previously implicated in pancreatic ductal adenocarcinoma (PDAC). In this study, we performed gene expression profiling of human PDAC tissues and identified Pitx2 as a promising candidate. Pitx2 expression was decreased from 2.6- to 19-fold in human PDAC tissues from microarray units. Immunochemistry staining showed that Pitx2 expression was moderate to intense in normal pancreatic and pancr...

  1. Expression of zinc finger E-box-binding homeobox factor 1 in epithelial ovarian cancer: A clinicopathological analysis of 238 patients

    OpenAIRE

    LI, XIUFANG; HUANG, RUIXIA; LI, RUTH HOLM; TROPE, CLAES G.; NESLAND, JAHN M.; SUO, ZHENHE

    2015-01-01

    A growing body of evidence indicates that aberrant activation of epithelial-to-mesenchymal transition (EMT) plays a key role in tumor cell invasion and metastasis. Zinc finger E-box-binding homeobox factor 1 (ZEB1), as a crucial mediator of EMT, contributes to the malignant progression of various epithelial tumors. To determine whether ZEB1 is involved in the progression of ovarian cancer, we immunohistochemically evaluated the expression of ZEB1 in 238 cases of epithelial ovarian cancer (EOC...

  2. Biomineralization, life-time of odontogenic cells and differential expression of the two homeobox genes MSX-1 and DLX-2 in transgenic mice.

    Science.gov (United States)

    Lézot, F; Thomas, B; Hotton, D; Forest, N; Orestes-Cardoso, S; Robert, B; Sharpe, P; Berdal, A

    2000-03-01

    Msx and Dlx homeobox genes encode for transcription factors that control early morphogenesis. More specifically, Msx-1, Msx-2, and Dlx-2 homeobox genes contribute to the initial patterning of the dentition. The present study is devoted to the potential role of those homeobox genes during the late formation of mineralized tissues, using the rodent incisor as an experimental system. The continuously erupting mandibular incisor allows (1) the coinvestigation of the whole sequences of amelogenesis and dentinogenesis, aligned along the main dental axis in a single sample in situ and (2) the differential characterization of transcripts generated by epithelial and ectomesenchymal odontogenic cells. Northern blot experiments on microdissected cells showed the continuing expression of Msx-2 and Dlx-2 in the later stages of dental biomineralization, differentially in epithelial and ectomesenchymal compartments. Transgenic mice produced with LacZ reporter constructs for Dlx-2 and Msx-1 were used to detect different components of the gene expression patterns with the sensitive beta-galactosidase histoenzymology. The results show a prominent epithelial involvement of Dlx-2, with stage-specific variations in the cells involved in enamel formation. Quantitative analyses identified specific modulations of Dlx-2 expression in ameloblasts depending on the anatomical sites of the incisor, showing more specifically an inverse linear relationship between the Dlx-2 promoter activity level and enamel thickness. This investigation extends the role of homeoproteins to postmitotic stages, which would control secretory cell activity, in a site-specific manner as shown here for Dlx-2.

  3. Increased methylation and decreased expression of homeobox genes TLX1, HOXA10 and DLX5 in human placenta are associated with trophoblast differentiation.

    Science.gov (United States)

    Novakovic, Boris; Fournier, Thierry; Harris, Lynda K; James, Joanna; Roberts, Claire T; Yong, Hannah E J; Kalionis, Bill; Evain-Brion, Danièle; Ebeling, Peter R; Wallace, Euan M; Saffery, Richard; Murthi, Padma

    2017-07-03

    Homeobox genes regulate embryonic and placental development, and are widely expressed in the human placenta, but their regulatory control by DNA methylation is unclear. DNA methylation analysis was performed on human placentae from first, second and third trimesters to determine methylation patterns of homeobox gene promoters across gestation. Most homeobox genes were hypo-methylated throughout gestation, suggesting that DNA methylation is not the primary mechanism involved in regulating HOX genes expression in the placenta. Nevertheless, several genes showed variable methylation patterns across gestation, with a general trend towards an increase in methylation over gestation. Three genes (TLX1, HOXA10 and DLX5) showed inverse gains of methylation with decreasing mRNA expression throughout pregnancy, supporting a role for DNA methylation in their regulation. Proteins encoded by these genes were primarily localised to the syncytiotrophoblast layer, and showed decreased expression later in gestation. siRNA mediated downregulation of DLX5, TLX1 and HOXA10 in primary term villous cytotrophoblast resulted in decreased proliferation and increased expression of differentiation markers, including ERVW-1. Our data suggest that loss of DLX5, TLX1 and HOXA10 expression in late gestation is required for proper placental differentiation and function.

  4. Pulmonary sequestrations of the upper lobe in children: Three presentations

    International Nuclear Information System (INIS)

    Hoeffel, J.C.; Bernard, C.; Didier, F.; Bretagne, M.C.; Gautry, P.; Olive, D.; Prevot, J.; Pernot, C.; Hopital des Enfants, 54 - Vandoeuvre-les-Nancy; Hopital des Enfants, 54 - Vandoeuvre-les-Nancy; Hopital des Enfants, 54 - Vandoeuvre-les-Nancy

    1986-01-01

    Pulmonary sequestrations are congenital abnormalities where nonfunctioning lung tissue receives its vascular supply from the systemic circulation (thoracic or abdominal aorta). It is necessary to establish the diagnosis in childhood when the lesions are uncomplicated. The authors present three cases of sequestration of the apex (2 extralobar and 1 atypical) with the main clinical and radiological features. Sequestrations in the upper lobe are rare, and the usual site is the left lower lobe. Plain X-rays show a dense opacity, sometimes with an air-fluid level: angiography is currently the best mean for definitive diagnosis; however, computed tomography will probably be very useful in the future. Differential diagnosis includes tumours of the superior mediastinum (neurogenic tumours, digestive duplication, bronchogenic cysts, pheochromocytoma and hydatid cysts). (orig.) [de

  5. Micromotor-Based Biomimetic Carbon Dioxide Sequestration: Towards Mobile Microscrubbers.

    Science.gov (United States)

    Uygun, Murat; Singh, Virendra V; Kaufmann, Kevin; Uygun, Deniz A; de Oliveira, Severina D S; Wang, Joseph

    2015-10-26

    We describe a mobile CO2 scrubbing platform that offers a greatly accelerated biomimetic sequestration based on a self-propelled carbonic anhydrase (CA) functionalized micromotor. The CO2 hydration capability of CA is coupled with the rapid movement of catalytic micromotors, and along with the corresponding fluid dynamics, results in a highly efficient mobile CO2 scrubbing microsystem. The continuous movement of CA and enhanced mass transport of the CO2 substrate lead to significant improvements in the sequestration efficiency and speed over stationary immobilized or free CA platforms. This system is a promising approach to rapid and enhanced CO2 sequestration platforms for addressing growing concerns over the buildup of greenhouse gas. © 2015 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

  6. Mineral CO2 sequestration in alkaline solid residues

    International Nuclear Information System (INIS)

    Huijgen, W.J.J.; Comans, R.N.J.; Witkamp, G.J.

    2004-12-01

    Mineral carbonation is a promising sequestration route for the permanent and safe storage of carbon dioxide. In addition to calcium- or magnesium-containing primary minerals, suitable alkaline solid residues can be used as feedstock. The use of alkaline residues has several advantages, such as their availability close to CO2 sources and their higher reactivity for carbonation than primary minerals. In addition, the environmental quality of residues can potentially be improved by carbonation. In this study, key factors of the mineral CO2 sequestration process are identified, their influence on the carbonation process is examined, and environmental properties of the reaction products with regard to their possible beneficial utilization are investigated. The use of alkaline solid residues forms a potentially attractive alternative for the first mineral sequestration plants

  7. Carbon Sequestration on Surface Mine Lands

    Energy Technology Data Exchange (ETDEWEB)

    Donald Graves; Christopher Barton; Richard Sweigard; Richard Warner; Carmen Agouridis

    2006-03-31

    reclamation practice. In addition, experiments were integrated within the reforestation effort to address specific questions pertaining to sequestration of carbon (C) on these sites.

  8. Soil carbon sequestration potential for "grain for green" project in Loess Plateau, China

    Science.gov (United States)

    Chang, R.; Fu, B.; Liu, Gaisheng; Liu, S.

    2011-01-01

    Conversion of cropland into perennial vegetation land can increase soil organic carbon (SOC) accumulation, which might be an important mitigation measure to sequester carbon dioxide from the atmosphere. The “Grain for Green” project, one of the most ambitious ecological programmes launched in modern China, aims at transforming the low-yield slope cropland into grassland and woodland. The Loess Plateau in China is the most important target of this project due to its serious soil erosion. The objectives of this study are to answer three questions: (1) what is the rate of the SOC accumulation for this “Grain for Green” project in Loess Plateau? (2) Is there a difference in SOC sequestration among different restoration types, including grassland, shrub and forest? (3) Is the effect of restoration types on SOC accumulation different among northern, middle and southern regions of the Loess Plateau? Based on analysis of the data collected from the literature conducted in the Loess Plateau, we found that SOC increased at a rate of 0.712 TgC/year in the top 20 cm soil layer for 60 years under this project across the entire Loess Plateau. This was a relatively reliable estimation based on current data, although there were some uncertainties. Compared to grassland, forest had a significantly greater effect on SOC accumulation in middle and southern Loess Plateau but had a weaker effect in the northern Loess Plateau. There were no differences found in SOC sequestration between shrub and grassland across the entire Loess Plateau. Grassland had a stronger effect on SOC sequestration in the northern Loess Plateau than in the middle and southern regions. In contrast, forest could increase more SOC in the middle and southern Loess Plateau than in the northern Loess Plateau, whereas shrub had a similar effect on SOC sequestration across the Loess Plateau. Our results suggest that the “Grain for Green” project can significantly increase the SOC storage in Loess Plateau

  9. State and Regional Control of Geological Carbon Sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Reitze, Arnold [Univ. of Utah, Salt Lake City, UT (United States); Durrant, Marie [Univ. of Utah, Salt Lake City, UT (United States)

    2011-03-01

    The United States has economically recoverable coal reserves of about 261 billion tons, which is in excess of a 250-­year supply based on 2009 consumption rates. However, in the near future the use of coal may be legally restricted because of concerns over the effects of its combustion on atmospheric carbon dioxide concentrations. Carbon capture and geologic sequestration offer one method to reduce carbon emissions from coal and other hydrocarbon energy production. While the federal government is providing increased funding for carbon capture and sequestration, recent congressional legislative efforts to create a framework for regulating carbon emissions have failed. However, regional and state bodies have taken significant actions both to regulate carbon and facilitate its capture and sequestration. This article explores how regional bodies and state government are addressing the technical and legal problems that must be resolved in order to have a viable carbon sequestration program. Several regional bodies have formed regulations and model laws that affect carbon capture and storage, and three bodies comprising twenty-three states—the Regional Greenhouse Gas Initiative, the Midwest Regional Greenhouse Gas Reduction Accord, and the Western Climate initiative—have cap-­and-trade programs in various stages of development. State property, land use and environmental laws affect the development and implementation of carbon capture and sequestration projects, and unless federal standards are imposed, state laws on torts and renewable portfolio requirements will directly affect the liability and viability of these projects. This paper examines current state laws and legislative efforts addressing carbon capture and sequestration.

  10. How organic carbon derived from multiple sources contributes to carbon sequestration processes in a shallow coastal system?

    Science.gov (United States)

    Watanabe, Kenta; Kuwae, Tomohiro

    2015-04-16

    Carbon captured by marine organisms helps sequester atmospheric CO 2 , especially in shallow coastal ecosystems, where rates of primary production and burial of organic carbon (OC) from multiple sources are high. However, linkages between the dynamics of OC derived from multiple sources and carbon sequestration are poorly understood. We investigated the origin (terrestrial, phytobenthos derived, and phytoplankton derived) of particulate OC (POC) and dissolved OC (DOC) in the water column and sedimentary OC using elemental, isotopic, and optical signatures in Furen Lagoon, Japan. Based on these data analysis, we explored how OC from multiple sources contributes to sequestration via storage in sediments, water column sequestration, and air-sea CO 2 exchanges, and analyzed how the contributions vary with salinity in a shallow seagrass meadow as well. The relative contribution of terrestrial POC in the water column decreased with increasing salinity, whereas autochthonous POC increased in the salinity range 10-30. Phytoplankton-derived POC dominated the water column POC (65-95%) within this salinity range; however, it was minor in the sediments (3-29%). In contrast, terrestrial and phytobenthos-derived POC were relatively minor contributors in the water column but were major contributors in the sediments (49-78% and 19-36%, respectively), indicating that terrestrial and phytobenthos-derived POC were selectively stored in the sediments. Autochthonous DOC, part of which can contribute to long-term carbon sequestration in the water column, accounted for >25% of the total water column DOC pool in the salinity range 15-30. Autochthonous OC production decreased the concentration of dissolved inorganic carbon in the water column and thereby contributed to atmospheric CO 2 uptake, except in the low-salinity zone. Our results indicate that shallow coastal ecosystems function not only as transition zones between land and ocean but also as carbon sequestration filters. They

  11. Development and validation of a testing protocol for carbon sequestration using a controlled environment.

    Science.gov (United States)

    2012-05-01

    Carbon footprints, carbon credits and associated carbon sequestration techniques are rapidly becoming part : of how environmental mitigation business is conducted, not only in Texas but globally. Terrestrial carbon : sequestration is the general term...

  12. CRADA Carbon Sequestration in Soils and Commercial Products

    Energy Technology Data Exchange (ETDEWEB)

    Jacobs, G.K.

    2002-01-31

    ORNL, through The Consortium for Research on Enhancing Carbon Sequestration in Terrestrial Ecosystems (CSiTE), collaborated with The Village Botanica, Inc. (VB) on a project investigating carbon sequestration in soils and commercial products from a new sustainable crop developed from perennial Hibiscus spp. Over 500 pre-treated samples were analyzed for soil carbon content. ORNL helped design a sampling scheme for soils during the planting phase of the project. Samples were collected and prepared by VB and analyzed for carbon content by ORNL. The project did not progress to a Phase II proposal because VB declined to prepare the required proposal.

  13. Oxidative Ce"3"+ sequestration by fungal manganese oxides with an associated Mn(II) oxidase activity

    International Nuclear Information System (INIS)

    Zheng, Haisu; Tani, Yukinori; Naitou, Hirotaka; Miyata, Naoyuki; Tojo, Fuyumi

    2016-01-01

    Sequestration of Ce"3"+ by biogenic manganese oxides (BMOs) formed by a Mn(II)-oxidizing fungus, Acremonium strictum strain KR21-2, was examined at pH 6.0. In anaerobic Ce"3"+ solution, newly formed BMOs exhibited stoichiometric Ce"3"+ oxidation, where the molar ratio of Ce"3"+ sequestered (Ce_s_e_q) relative to Mn"2"+ released (Mn_r_e_l) was maintained at approximately two throughout the reaction. A similar Ce"3"+ sequestration trend was observed in anaerobic treatment of BMOs in which the associated Mn(II) oxidase was completely inactivated by heating at 85 °C for 1 h or by adding 50 mM NaN_3. Aerobic Ce"3"+ treatment of newly formed BMO (enzymatically active) resulted in excessive Ce"3"+ sequestration over Mn"2"+ release, yielding Ce_s_e_q/Mn_r_e_l > 200, whereas heated or poisoned BMOs released a significant amount of Mn"2"+ with lower Ce"3"+ sequestration efficiency. Consequently, self-regeneration by the Mn(II) oxidase in newly formed BMO effectively suppressed Mn"2"+ release and enhanced oxidative Ce"3"+ sequestration under aerobic conditions. Repeated treatments of heated or poisoned BMOs under aerobic conditions confirmed that oxidative Ce"3"+ sequestration continued even after most Mn oxide was released from the solid phase, indicating auto-catalytic Ce"3"+ oxidation at the solid phase produced through primary Ce"3"+ oxidation by BMO. From X-ray diffraction analysis, the resultant solid phases formed through Ce"3"+ oxidation by BMO under both aerobic and anaerobic conditions consisted of cerianite with crystal sizes of 5.00–7.23 Å. Such nano-sized CeO_2 (CeO_2_,_B_M_O) showed faster auto-catalytic Ce"3"+ oxidation than that on well-crystalized cerianite under aerobic conditions, where the normalized pseudo-first order rate constants for auto-catalytic Ce"3"+ oxidation on CeO_2_,_B_M_O was two orders of magnitude higher. Consequently, we concluded that Ce"3"+ contact with BMOs sequesters Ce"3"+ through two oxidation paths: primary Ce"3

  14. Polyalanine expansion and frameshift mutations of the paired-like homeobox gene PHOX2B in congenital central hypoventilation syndrome.

    Science.gov (United States)

    Amiel, Jeanne; Laudier, Béatrice; Attié-Bitach, Tania; Trang, Ha; de Pontual, Loïc; Gener, Blanca; Trochet, Delphine; Etchevers, Heather; Ray, Pierre; Simonneau, Michel; Vekemans, Michel; Munnich, Arnold; Gaultier, Claude; Lyonnet, Stanislas

    2003-04-01

    Congenital central hypoventilation syndrome (CCHS or Ondine's curse; OMIM 209880) is a life-threatening disorder involving an impaired ventilatory response to hypercarbia and hypoxemia. This core phenotype is associated with lower-penetrance anomalies of the autonomic nervous system (ANS) including Hirschsprung disease and tumors of neural-crest derivatives such as ganglioneuromas and neuroblastomas. In mice, the development of ANS reflex circuits is dependent on the paired-like homeobox gene Phox2b. Thus, we regarded its human ortholog, PHOX2B, as a candidate gene in CCHS. We found heterozygous de novo mutations in PHOX2B in 18 of 29 individuals with CCHS. Most mutations consisted of 5-9 alanine expansions within a 20-residue polyalanine tract probably resulting from non-homologous recombination. We show that PHOX2B is expressed in both the central and the peripheral ANS during human embryonic development. Our data support an essential role of PHOX2B in the normal patterning of the autonomous ventilation system and, more generally, of the ANS in humans.

  15. [Association of muscle segment homeobox gene 1 polymorphisms with nonsyndromic cleft lip with or without cleft palate].

    Science.gov (United States)

    Zhang, Li; Tang, Jun-Ling; Liang, Shang-Zheng

    2008-06-01

    Muscle segment homeobox gene (MSX)1 has been proposed as a gene in which mutations may contribute to nonsyndromic cleft lip with or without cleft palate (NSCL/P). To study MSX1 polymorphisms in NSCL/ P by means of polymerase chain reaction-single-strand conformation polymorphism (PCR-SSCP), and investigate the association of MSX1 exons 1 polymorphisms with NSCL/P. DNA were extracted from blood samples from NSCL/P and unrelated normal subjects. Genome DNA from peripheral leukocyte with these blood samples were extracted, which was used as template to amplify desired gene fragment of MSX1 exons 1 by means of polymerase chain reaction (PCR). The PCR products were examined by single-strand conformation polymorphism (SSCP). The MSX1 exons 1 polymorphisms were examined by sequencing if mutations were found. MSX1 genes of exon 1 mutation was not been found in the NSCL/P and unrelated normal subjects by SSCP. No correlation between MSX1 exon 1 and NSCL/P was found. MSX1 exon 1 may not be a key gene (susceptibility gene) in NSCL/P.

  16. Estrogen-dependent expression of sine oculis homeobox 1 in the mouse uterus during the estrous cycle

    Energy Technology Data Exchange (ETDEWEB)

    Bae, Sijeong [Department of Biomedical Science, CHA University, Seongnam-si, Gyeonggi-do 13488 (Korea, Republic of); Kwon, Hwang [Fertility Center of CHA Bundang Medical Center, Seongnam-si, Gyeonggi-do 13496 (Korea, Republic of); Yoon, Hyemin [Department of Biomedical Science, CHA University, Seongnam-si, Gyeonggi-do 13488 (Korea, Republic of); Park, Miseon [Fertility Center of CHA Gangnam Medical Center, Seoul 06135 (Korea, Republic of); Kim, Hye-Ryun; Song, Haengseok [Department of Biomedical Science, CHA University, Seongnam-si, Gyeonggi-do 13488 (Korea, Republic of); Hong, Kwonho, E-mail: kwonho.hong@dankook.ac.kr [Department of Nanobiomedical Science & BK21 PLUS NBM Global Research Center for Regenerative Medicine, Dankook University, Cheonan-si, Chungcheongnam-do 31116 (Korea, Republic of); Choi, Youngsok, E-mail: youngsokchoi@cha.ac.kr [Department of Biomedical Science, CHA University, Seongnam-si, Gyeonggi-do 13488 (Korea, Republic of); Fertility Center of CHA Gangnam Medical Center, Seoul 06135 (Korea, Republic of)

    2016-04-08

    The sine oculis homeobox 1 (SIX1) is a member of the Six gene family. SIX1 is involved in tissue development by regulating proliferation, apoptosis, and differentiation. However, function of SIX1 in the uterus remains unknown. Here, we found that Six1 expression is regulated along the estrous cycle in mouse uterus. Six1 expression was significantly increased at estrus stage and decreased at the rest of stages. SIX1 is detected in the luminal and glandular epithelium of uterine endometrium at the estrus stage. Estrogen injection increased Six1 expression in the ovariectomized mouse uterus, whereas progesterone had no effect on its expression. Estrogen receptor antagonist inhibited estrogen-induced Six1 expression. Our findings imply that SIX1 may play a role as an important regulator to orchestrate the dynamic of uterine endometrium in response to estrogen level during the estrous cycle. These results will give us a better understanding of uterine biology. - Highlights: • Six1 expression is regulated during the estrous cycle in mouse uterus. • Six1 is highly expressed at the estrus stage of estrous cycle. • SIX1 is detected in luminal/glandular epithelium of the uterus at the estrus stage. • Estrogen stimulates Six1 expression in an estrogen receptor-dependent manner.

  17. Expression of β-nerve growth factor and homeobox A10 in experimental cryptorchidism treated with exogenous nerve growth factor.

    Science.gov (United States)

    Xian, Hua; Xian, Yun; Liu, Lili; Wang, Yongjun; He, Jianghong; Huang, Jianfei

    2015-04-01

    With the exception of standard inguinal orchidopexy, treatment of cryptorchidism with human chorionic gonadotropin has been performed for several years; however, its side effects have limited its application. The β‑nerve growth factor (NGF) and homeobox A10 (HoxA10) genes are closely associated with the development of the testes. To the best of our knowledge, whether exogenous NGF alters the endogenous levels of NGF and HoxA10 in cryptorchidism in rats remains to be elucidated. The aim of the present study was to evaluate the gene and protein expression of NGF and HoxA10 in experimental cryptorchidism following treatment with exogenous NGF. A unilateral mechanical cryptorchidism model in Sprague-Dawley rats was established and different concentrations of exogenous NGF were administered to observe the effects of NGF on cryptorchidism. Changes in the gene and protein expression levels of NGF and HoxA10 in the cryptorchid tissues of each group were identified using one step reverse transcription-quantitative polymerase chain reaction, in situ hybridization with digoxigenin‑labeled‑β‑NGF RNA probes, immunofluorescence and immunohistochemistry, respectively. The expression levels of NGF and HoxA10 were markedly higher in the group treated with a high dose of exogenous NGF compared with the group treated with a low dose of exogenous NGF and the group treated with human chorionic gonadotropin. These results confirmed the potential therapeutic effect of exogenous NGF in human cryptorchidism.

  18. Homeobox B9 is overexpressed in hepatocellular carcinomas and promotes tumor cell proliferation both in vitro and in vivo

    International Nuclear Information System (INIS)

    Li, Fangyi; Dong, Lei; Xing, Rong; Wang, Li; Luan, Fengming; Yao, Chenhui; Ji, Xuening; Bai, Lizhi

    2014-01-01

    Highlights: • HOXB9 is overexpressed in human HCC samples. • HOXB9 over expression had shorter survival time than down expression. • HOXB9 stimulated the proliferation of HCC cells. • Activation of TGF-β1 contributes to HOXB9-induced proliferation in HCC cells. - Abstract: HomeoboxB9 (HOXB9), a nontransforming transcription factor that is overexpressed in multiple tumor types, alters tumor cell fate and promotes tumor progression. However, the role of HOXB9 in hepatocellular carcinoma (HCC) development has not been well studied. In this paper, we found that HOXB9 is overexpressed in human HCC samples. We investigated HOXB9 expression and its prognostic value for HCC. HCC surgical tissue samples were taken from 89 HCC patients. HOXB9 overexpression was observed in 65.2% of the cases, and the survival analysis showed that the HOXB9 overexpression group had significantly shorter overall survival time than the HOXB9 downexpression group. The ectopic expression of HOXB9 stimulated the proliferation of HCC cells; whereas the knockdown of HOXB9 produced an opposite effect. HOXB9 also modulated the tumorigenicity of HCC cells in vivo. Moreover, we found that the activation of TGF-β1 contributes to HOXB9-induced proliferation activities. The results provide the first evidence that HOXB9 is a critical regulator of tumor growth factor in HCC

  19. Homeobox B9 is overexpressed in hepatocellular carcinomas and promotes tumor cell proliferation both in vitro and in vivo

    Energy Technology Data Exchange (ETDEWEB)

    Li, Fangyi [Department of General Surgery, Dalian Municipal Friendship Hospital, No. 8 Sanba Square, Zhongshan District, Dalian 116001 (China); Dong, Lei, E-mail: dlleidong@126.com [Department of Laparoscopic Surgery, First Affiliated Hospital of Dalian Medical University, No. 193 Lianhe Street, Shahekou District, Dalian 116001 (China); Xing, Rong [Department of Pathology and Pathophysiology, Dalian Medical University, No. 9 Lvshunnan Road, Lvshunkou District, Dalian 116044 (China); Wang, Li; Luan, Fengming; Yao, Chenhui [Department of General Surgery, Dalian Municipal Friendship Hospital, No. 8 Sanba Square, Zhongshan District, Dalian 116001 (China); Ji, Xuening [Department of Oncology, Zhongshan Hospital of Dalian University, No. 6 Jiefang Street, Zhongshan District, Dalian 116001 (China); Bai, Lizhi, E-mail: dllizhibai@126.com [Department of Emergency, Zhongshan Hospital of Dalian University, No. 6 Jiefang Street, Zhongshan District, Dalian 116001 (China)

    2014-02-07

    Highlights: • HOXB9 is overexpressed in human HCC samples. • HOXB9 over expression had shorter survival time than down expression. • HOXB9 stimulated the proliferation of HCC cells. • Activation of TGF-β1 contributes to HOXB9-induced proliferation in HCC cells. - Abstract: HomeoboxB9 (HOXB9), a nontransforming transcription factor that is overexpressed in multiple tumor types, alters tumor cell fate and promotes tumor progression. However, the role of HOXB9 in hepatocellular carcinoma (HCC) development has not been well studied. In this paper, we found that HOXB9 is overexpressed in human HCC samples. We investigated HOXB9 expression and its prognostic value for HCC. HCC surgical tissue samples were taken from 89 HCC patients. HOXB9 overexpression was observed in 65.2% of the cases, and the survival analysis showed that the HOXB9 overexpression group had significantly shorter overall survival time than the HOXB9 downexpression group. The ectopic expression of HOXB9 stimulated the proliferation of HCC cells; whereas the knockdown of HOXB9 produced an opposite effect. HOXB9 also modulated the tumorigenicity of HCC cells in vivo. Moreover, we found that the activation of TGF-β1 contributes to HOXB9-induced proliferation activities. The results provide the first evidence that HOXB9 is a critical regulator of tumor growth factor in HCC.

  20. The homeobox transcription factor HOXA9 is a regulator of SHOX in U2OS cells and chicken micromass cultures.

    Directory of Open Access Journals (Sweden)

    Claudia Durand

    Full Text Available The homeobox gene SHOX encodes for a transcription factor that plays an important role during limb development. Mutations or deletions of SHOX in humans cause short stature in Turner, Langer and Leri-Weill syndrome as well as idiopathic short stature. During embryonic development, SHOX is expressed in a complex spatio-temporal pattern that requires the presence of specific regulatory mechanisms. Up to now, it was known that SHOX is regulated by two upstream promoters and several enhancers on either side of the gene, but no regulators have been identified that can activate or repress the transcription of SHOX by binding to these regulatory elements. We have now identified the homeodomain protein HOXA9 as a positive regulator of SHOX expression in U2OS cells. Using luciferase assays, chromatin immunoprecipitation and electrophoretic mobility shift assays, we could narrow down the HOXA9 binding site to two AT-rich sequences of 31 bp within the SHOX promoter 2. Virus-induced Hoxa9 overexpression in a chicken micromass model validated the regulation of Shox by Hoxa9 (negative regulation. As Hoxa9 and Shox are both expressed in overlapping regions of the developing limb buds, a regulatory relationship of Hoxa9 and Shox during the process of limb development can be assumed.

  1. Bisphenol-A induces expression of HOXC6, an estrogen-regulated homeobox-containing gene associated with breast cancer.

    Science.gov (United States)

    Hussain, Imran; Bhan, Arunoday; Ansari, Khairul I; Deb, Paromita; Bobzean, Samara A M; Perrotti, Linda I; Mandal, Subhrangsu S

    2015-06-01

    HOXC6 is a homeobox-containing gene associated with mammary gland development and is overexpressed in variety of cancers including breast and prostate cancers. Here, we have examined the expression of HOXC6 in breast cancer tissue, investigated its transcriptional regulation via estradiol (E2) and bisphenol-A (BPA, an estrogenic endocrine disruptor) in vitro and in vivo. We observed that HOXC6 is differentially over-expressed in breast cancer tissue. E2 induces HOXC6 expression in cultured breast cancer cells and in mammary glands of Sprague Dawley rats. HOXC6 expression is also induced upon exposure to BPA both in vitro and in vivo. Estrogen-receptor-alpha (ERα) and ER-coregulators such as MLL-histone methylases are bound to the HOXC6 promoter upon exposure to E2 or BPA and that resulted in increased histone H3K4-trimethylation, histone acetylation, and recruitment of RNA polymerase II at the HOXC6 promoter. HOXC6 overexpression induces expression of tumor growth factors and facilitates growth 3D-colony formation, indicating its potential roles in tumor growth. Our studies demonstrate that HOXC6, which is a critical player in mammary gland development, is upregulated in multiple cases of breast cancer, and is transcriptionally regulated by E2 and BPA, in vitro and in vivo. Published by Elsevier B.V.

  2. The homeobox protein CEH-23 mediates prolonged longevity in response to impaired mitochondrial electron transport chain in C. elegans.

    Directory of Open Access Journals (Sweden)

    Ludivine Walter

    2011-06-01

    Full Text Available Recent findings indicate that perturbations of the mitochondrial electron transport chain (METC can cause extended longevity in evolutionarily diverse organisms. To uncover the molecular basis of how altered METC increases lifespan in C. elegans, we performed an RNAi screen and revealed that three predicted transcription factors are specifically required for the extended longevity of mitochondrial mutants. In particular, we demonstrated that the nuclear homeobox protein CEH-23 uniquely mediates the longevity but not the slow development, reduced brood size, or resistance to oxidative stress associated with mitochondrial mutations. Furthermore, we showed that ceh-23 expression levels are responsive to altered METC, and enforced overexpression of ceh-23 is sufficient to extend lifespan in wild-type background. Our data point to mitochondria-to-nucleus communications to be key for longevity determination and highlight CEH-23 as a novel longevity factor capable of responding to mitochondrial perturbations. These findings provide a new paradigm for how mitochondria impact aging and age-dependent diseases.

  3. 75 FR 75059 - Mandatory Reporting of Greenhouse Gases: Injection and Geologic Sequestration of Carbon Dioxide

    Science.gov (United States)

    2010-12-01

    ... Greenhouse Gases: Injection and Geologic Sequestration of Carbon Dioxide; Final Rule #0;#0;Federal Register... Mandatory Reporting of Greenhouse Gases: Injection and Geologic Sequestration of Carbon Dioxide AGENCY... greenhouse gas monitoring and reporting from facilities that conduct geologic sequestration of carbon dioxide...

  4. 75 FR 33613 - Notice of the Carbon Sequestration-Geothermal Energy-Science Joint Workshop

    Science.gov (United States)

    2010-06-14

    ... Energy, DOE. ACTION: Notice of the Carbon Sequestration--Geothermal Energy--Science Joint Workshop... Fossil Energy-Carbon Sequestration Program will be holding a joint workshop on Common Research Themes for...-- http://www.geothermal.energy.gov . DATES: The Carbon Sequestration--Geothermal Energy--Science Joint...

  5. Carbon storage capacity of semi-arid grassland soils and sequestration potentials in northern China.

    Science.gov (United States)

    Wiesmeier, Martin; Munro, Sam; Barthold, Frauke; Steffens, Markus; Schad, Peter; Kögel-Knabner, Ingrid

    2015-10-01

    Organic carbon (OC) sequestration in degraded semi-arid environments by improved soil management is assumed to contribute substantially to climate change mitigation. However, information about the soil organic carbon (SOC) sequestration potential in steppe soils and their current saturation status remains unknown. In this study, we estimated the OC storage capacity of semi-arid grassland soils on the basis of remote, natural steppe fragments in northern China. Based on the maximum OC saturation of silt and clay particles soils (grazing land, arable land, eroded areas) were estimated. The analysis of natural grassland soils revealed a strong linear regression between the proportion of the fine fraction and its OC content, confirming the importance of silt and clay particles for OC stabilization in steppe soils. This relationship was similar to derived regressions in temperate and tropical soils but on a lower level, probably due to a lower C input and different clay mineralogy. In relation to the estimated OC storage capacity, degraded steppe soils showed a high OC saturation of 78-85% despite massive SOC losses due to unsustainable land use. As a result, the potential of degraded grassland soils to sequester additional OC was generally low. This can be related to a relatively high contribution of labile SOC, which is preferentially lost in the course of soil degradation. Moreover, wind erosion leads to substantial loss of silt and clay particles and consequently results in a direct loss of the ability to stabilize additional OC. Our findings indicate that the SOC loss in semi-arid environments induced by intensive land use is largely irreversible. Observed SOC increases after improved land management mainly result in an accumulation of labile SOC prone to land use/climate changes and therefore cannot be regarded as contribution to long-term OC sequestration. © 2015 John Wiley & Sons Ltd.

  6. Sequestration of Soil Carbon as Secondary Carbonates (Invited)

    Science.gov (United States)

    Lal, R.

    2013-12-01

    Rattan Lal Carbon Management and Sequestration Center The Ohio State University Columbus, OH 43210 USA Abstract World soils, the major carbon (C) reservoir among the terrestrial pools, contain soil organic C (SOC) and soil inorganic C (SIC). The SIC pool is predominant in soils of arid and semi-arid regions. These regions cover a land area of about 4.9x109 ha. The SIC pool in soils containing calcic and petrocalcic horizons is estimated at about 695-748 Pg (Pg = 1015 g = 1 gigaton) to 1-m depth. There are two types of carbonates. Lithogenic or primary carbonates are formed from weathering of carbonaceous rocks. Pedogenic or secondary carbonates are formed by dissolution of CO2 in the soil air to form carbonic acid and precipitation as carbonates of Ca+2 or Mg+2. It is the availability of Ca+2 or Mg+2 from outside the ecosystem that is essential to sequester atmospheric CO2. Common among outside sources of Ca+2 or Mg+2 are irrigation water, aerial deposition, sea breeze, fertilizers, manure and other amendments. The decomposition of SOC and root respiration may increase the partial pressure of CO2 in the soil air and lead to the formation of HCO_3^- upon dissolution in H20. Precipitation of secondary carbonates may result from decreased partial pressure of CO2 in the sub-soil, increased concentration of Ca+2, Mg+2 and HCO_3^- in soil solution, and decreased soil moisture content by evapotranspiration. Transport of bicarbonates in irrigated soils and subsequent precipitation above the ground water (calcrete), activity of termites and other soil fauna, and management of urban soils lead to formation of secondary carbonates. On a geologic time scale, weathering of silicate minerals and transport of the by-products into the ocean is a geological process of sequestration of atmospheric CO2. Factors affecting formation of secondary carbonates include land use, and soil and crop management including application of biosolids, irrigation and the quality of irrigation water

  7. Quantification of the sequestration of indium 111 labelled platelets

    International Nuclear Information System (INIS)

    Najean, Y.; Picard, N.; Dufour, V.; Rain, J.D.

    1988-01-01

    A simple method is proposed for an accurate quantification of the splenic and/or hepatic sequestration of the 111 In-labelled platelets. It could be allow a better prediction of the efficiency of splenectomy in idiopathic thrombocytopenic purpura [fr

  8. Soil Carbon Sequestration and the Greenhouse Effect (2nd Edition)

    Science.gov (United States)

    This volume is a second edition of the book “Soil Carbon Sequestration and The Greenhouse Effect”. The first edition was published in 2001 as SSSA Special Publ. #57. The present edition is an update of the concepts, processes, properties, practices and the supporting data. All chapters are new co...

  9. The effect of soil fauna on carbon sequestration in soil

    Czech Academy of Sciences Publication Activity Database

    Frouz, Jan; Pižl, Václav; Kaneda, Satoshi; Šimek, Miloslav

    2008-01-01

    Roč. 10, - (2008) ISSN 1029-7006. [EGU General Assembly 2008. 13.04.2008-18.04.2008, Vienna] Institutional research plan: CEZ:AV0Z60660521 Keywords : soil fauna * carbon sequestration * soil Subject RIV: EH - Ecology, Behaviour

  10. Geothermal energy combined with CO2 sequestration : An additional benefit

    NARCIS (Netherlands)

    Salimi, H.; Wolf, K.H.A.A.; Bruining, J.

    2012-01-01

    In this transition period from a fossil-fuel based society to a sustainable-energy society, it is expected that CO2 capture and subsequent sequestration in geological formations plays a major role in reducing greenhouse gas emissions. An alternative for CO2 emission reduction is to partially replace

  11. Intralobar bronchopulmonary sequestration in the newborn - a congenital malformation

    International Nuclear Information System (INIS)

    Laurin, S.; Haegerstrand, I.

    1999-01-01

    Background. Intralobar sequestration (ILS) has been suggested to be an acquired lesion. However, we have observed several young infants who had ILS. Objectives. Since this fact seems to indicate a congenital origin, we reviewed our experience. Material and methods. A retrospective review of bronchopulmonary sequestration from the Departments of Radiology and Pathology in Lund between 1964 and 1997. Results. We identified seven infants or young children with a diagnosis of intralobar sequestration. In each patient, the ILS was present before recurrent infection developed. Five had chest X-rays as neonates, one at 3 months and one at 11 months of age. All but one showed an abnormality on their first chest X-ray, consistent with sequestration. Six of the ILS were verified at angiography; all seven were surgically removed. Two of the children with ILS also had congenital cystic adenomatoid malformation (CCAM). Three children had both ILS and scimitar syndrome. Conclusions. The fact that ILS was present in seven newborn and young infants indicates that this lesion is, at least in some patients, a congenital malformation. (orig.)

  12. Pulmonary sequestration with histologic changes of cystic adenomatoid malformation

    International Nuclear Information System (INIS)

    Morin, C.; Filiatrault, D.; Russo, P.

    1989-01-01

    Pulmonary sequestration and congenital cystic adenomatoid malformation (CCAM) are two infrequent congenital pulmonary diseases. The combination of these two entities is rare. We report a case where the antenatal ultrasonography showed a left pulmonary mass suggesting CCAM. The US done after birth revealed an aberrant vascularisation. Pathologic examination confirmed the association of both lesions. (orig.)

  13. Cost Evaluation of CO2 Sequestration by Aqueous Mineral Carbonation

    NARCIS (Netherlands)

    Huijgen, W.J.J.; Comans, R.N.J.; Witkamp, G.J.

    2007-01-01

    A cost evaluation of CO2 sequestration by aqueous mineral carbonation has been made using either wollastonite (CaSiO3) or steel slag as feedstock. First, the process was simulated to determine the properties of the streams as well as the power and heat consumption of the process equipment. Second, a

  14. Metal ion sequestration: An exciting dimension for molecularly ...

    African Journals Online (AJOL)

    The use of a tight binding macrocyclic ligand to complex a metal ion so that this serves as receptee on the Molecularly Imprinted Polymer (MIP) receptor as described here affords a sequestration route for a targeted metal ion, with potential for environmental remediation and restoration applications. Ethylene glycol ...

  15. Mayamontana coccolobae (Basidiomycota), a new sequestrate taxon from Belize

    Science.gov (United States)

    Michael A. Castellano; James M. Trappe; D. Jean Lodge

    2007-01-01

    A new semi-hypogeous, sequestrate genus and species in the Basidiomycota is described from the Maya Mountains of Belize, where it was fruiting in association with Coccoloba belizensis. Mayamontana coccolobae is characterized by small, bright orange basidiomata with a friable, loculate, red-orange to red gleba and bilaterally...

  16. Climate change and carbon sequestration opportunities on national forests

    Science.gov (United States)

    R.L. Deal

    2010-01-01

    Deforestation globally accounts for about 20 percent of total greenhouse gas emissions. One of the major forestry challenges in the United States is reducing the loss of forest land from development. Foresters have a critical role to play in forest management and carbon sequestration to reduce greenhouse gas emissions, and forestry can be part of the solution. A recent...

  17. A Sustainability Initiative to Quantify Carbon Sequestration by Campus Trees

    Science.gov (United States)

    Cox, Helen M.

    2012-01-01

    Over 3,900 trees on a university campus were inventoried by an instructor-led team of geography undergraduates in order to quantify the carbon sequestration associated with biomass growth. The setting of the project is described, together with its logistics, methodology, outcomes, and benefits. This hands-on project provided a team of students…

  18. Using Biomass to Improve Site Quality and Carbon Sequestration

    Science.gov (United States)

    Bryce J. Stokes; Felipe G. Sanchez; Emily A. Carter

    1998-01-01

    The future demands on forest lands are a concern because of reduced productivity, especially on inherently poor sites, sites with long-depleted soils, or those soils that bear repeated, intensive short rotations. Forests are also an important carbon sink and, when well managed, can make even more significant contributions to sequestration and to reduction of greenhouse...

  19. Diagnosis of arterial sequestration using multidetector CT angiography

    Energy Technology Data Exchange (ETDEWEB)

    Yu Hong, E-mail: yuhong.2002@hotmail.com [Department of Radiology, Changzheng Hospital, Second Military Medical University, Shanghai, 200003 (China); Li Huimin, E-mail: lihuiminphd@163.com [Department of Radiology, Changzheng Hospital, Second Military Medical University, Shanghai, 200003 (China); Liu Shiyuan, E-mail: cjr.liushiyuan@vip.163.com [Department of Radiology, Changzheng Hospital, Second Military Medical University, Shanghai, 200003 (China); Xiao Xiangsheng, E-mail: cjr.xxsh@vip.163.com [Department of Radiology, Changzheng Hospital, Second Military Medical University, Shanghai, 200003 (China)

    2010-11-15

    Background: Arterial sequestration is a rare congenital disorder. The diagnostic evaluation of this condition using multidetector computerized tomography (MDCT) has not been described previously. The purpose of this study was to describe the characteristic features of this disorder and to assess the use of MDCT in visualizing the characteristic anatomic features. Methods: We retrospectively reviewed the records of seven patients with anomalous systemic blood supply to left lower lobe of the lung. All the patients had undergone MDCT angiography. To evaluate the lung parenchyma, bronchial branching pattern, and vascular anatomy, four series of images were systematically reconstructed as follows: contiguous transverse CT scans viewed at mediastinal and pulmonary window settings, oblique coronal and sagittal maximum intensity projections (MIP), multiplanar reconstruction (MPR), and three-dimensional volume-rendered images (VR) of airway and thoracic vascular structures. Results: All 7 cases had isolated and tortuous arterial anatomy from the descending thoracic aorta to the basal segment of the left lower lobe; however, variable distribution of branches was observed. Characteristic findings of anomalous systemic arterial (ASA) supply were distinct from those seen in other pulmonary sequestration syndromes and were well visualized by the use of noninvasive MDCT. Conclusion: Complex CT findings allow clear imaging of arterial sequestration and the ASA blood supply; MDCT angiography has demonstrated its value and accuracy in diagnosing this condition, obviating the use of digital subtraction angiography and magnetic resonance angiography for the diagnosis of arterial sequestration.

  20. Diagnosis of arterial sequestration using multidetector CT angiography

    International Nuclear Information System (INIS)

    Yu Hong; Li Huimin; Liu Shiyuan; Xiao Xiangsheng

    2010-01-01

    Background: Arterial sequestration is a rare congenital disorder. The diagnostic evaluation of this condition using multidetector computerized tomography (MDCT) has not been described previously. The purpose of this study was to describe the characteristic features of this disorder and to assess the use of MDCT in visualizing the characteristic anatomic features. Methods: We retrospectively reviewed the records of seven patients with anomalous systemic blood supply to left lower lobe of the lung. All the patients had undergone MDCT angiography. To evaluate the lung parenchyma, bronchial branching pattern, and vascular anatomy, four series of images were systematically reconstructed as follows: contiguous transverse CT scans viewed at mediastinal and pulmonary window settings, oblique coronal and sagittal maximum intensity projections (MIP), multiplanar reconstruction (MPR), and three-dimensional volume-rendered images (VR) of airway and thoracic vascular structures. Results: All 7 cases had isolated and tortuous arterial anatomy from the descending thoracic aorta to the basal segment of the left lower lobe; however, variable distribution of branches was observed. Characteristic findings of anomalous systemic arterial (ASA) supply were distinct from those seen in other pulmonary sequestration syndromes and were well visualized by the use of noninvasive MDCT. Conclusion: Complex CT findings allow clear imaging of arterial sequestration and the ASA blood supply; MDCT angiography has demonstrated its value and accuracy in diagnosing this condition, obviating the use of digital subtraction angiography and magnetic resonance angiography for the diagnosis of arterial sequestration.

  1. Soil carbon sequestration and biochar as negative emission technologies.

    Science.gov (United States)

    Smith, Pete

    2016-03-01

    Despite 20 years of effort to curb emissions, greenhouse gas (GHG) emissions grew faster during the 2000s than in the 1990s, which presents a major challenge for meeting the international goal of limiting warming to deforestation, showed that all NETs have significant limits to implementation, including economic cost, energy requirements, land use, and water use. In this paper, I assess the potential for negative emissions from soil carbon sequestration and biochar addition to land, and also the potential global impacts on land use, water, nutrients, albedo, energy and cost. Results indicate that soil carbon sequestration and biochar have useful negative emission potential (each 0.7 GtCeq. yr(-1) ) and that they potentially have lower impact on land, water use, nutrients, albedo, energy requirement and cost, so have fewer disadvantages than many NETs. Limitations of soil carbon sequestration as a NET centre around issues of sink saturation and reversibility. Biochar could be implemented in combination with bioenergy with carbon capture and storage. Current integrated assessment models do not represent soil carbon sequestration or biochar. Given the negative emission potential of SCS and biochar and their potential advantages compared to other NETs, efforts should be made to include these options within IAMs, so that their potential can be explored further in comparison with other NETs for climate stabilization. © 2016 John Wiley & Sons Ltd.

  2. Computational Modeling of the Geologic Sequestration of Carbon Dioxide

    Science.gov (United States)

    Geologic sequestration of CO2 is a component of C capture and storage (CCS), an emerging technology for reducing CO2 emissions to the atmosphere, and involves injection of captured CO2 into deep subsurface formations. Similar to the injection of hazardous wastes, before injection...

  3. Carbon sequestration potential for forage and pasture systems

    Science.gov (United States)

    Grassland soils represent a large reservoir of organic and inorganic carbon. Regionally, grasslands are annual CO2 sources or sinks depending on crop and soil management, current soil organic carbon (SOC) concentration and climate. Land management changes (LMC) impact SOC sequestration rate, the du...

  4. Terrestrial biological carbon sequestration: science for enhancement and implementation

    Science.gov (United States)

    Wilfred M. Post; James E. Amonette; Richard Birdsey; Charles T. Jr. Garten; R. Cesar Izaurralde; Philip Jardine; Julie Jastrow; Rattan Lal; Gregg. Marland

    2009-01-01

    The purpose of this chapter is to review terrestrial biological carbon sequestration and evaluate the potential carbon storage capacity if present and new techniques are more aggressively utilized. Photosynthetic CO2 capture from the atmosphere and storage of the C in aboveground and belowground biomass and in soil organic and inorganic forms can...

  5. La foret classee d'Atakpame: diversite, typologie, sequestration de ...

    African Journals Online (AJOL)

    This study assesses the woodlands diversity in Atakpamé classified forest (FCA) of Togo and their potential carbon sequestration. The FCA, an important production source of diversified products and very useful for riparian populations survival is weakened. FCA is subject to various anthropogenic pressures that affect ...

  6. Microbial Contribution to Organic Carbon Sequestration in Mineral Soil

    Science.gov (United States)

    Soil productivity and sustainability are dependent on soil organic matter (SOM). Our understanding on how organic inputs to soil from microbial processes become converted to SOM is still limited. This study aims to understand how microbes affect carbon (C) sequestration and the formation of recalcit...

  7. ESTIMATION OF CARBON SEQUESTRATION BY RUSSIAN FORESTS: GEOSPATIAL ISSUE

    Directory of Open Access Journals (Sweden)

    N. V. Malysheva

    2017-01-01

    Full Text Available Сategories of carbon sequestration assessment for Russian forests are identified by GIS toolkit. Those are uniform by bioclimatic and site-specific conditions strata corresponding to modern version of bioclimatic forest district division. Stratification of forests at early stage substantially reduces the ambiguity of the evaluation because phytomass conversion sequestration capacity and expansion factor dependent on site-specific condition for calculating of forest carbon sink are absolutely necessary. Forest management units were linked to strata. Biomass conversion and expansion factor for forest carbon sink assessment linked to the strata were recalculated for forest management units. All operations were carried out with GIS analytical toolkit due to accessible functionalities. Units for forest carbon storage inventory and forest carbon balance calculation were localized. Production capacity parameters and forest carbon sequestration capacity have been visualized on maps complied by ArcGIS. Based on spatially-explicit information, we have found out that the greatest annual rates of forest’s carbon accumulation in Russian forests fall into mixed coniferous-deciduous forests of European-Ural part of Russia to Kaliningrad, Smolensk and Briansk Regions, coniferous-deciduous forests close to the boundary of Khabarovsk Region and Primorskij Kray in the Far East, as well as separate forest management units of Kabardino-Balkariya NorthCaucasian mountain area. The geospatial visualization of carbon sequestration by Russian forests and carbon balance assessment has been given.

  8. Regulating forest rotation to increase CO{sub 2} sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Gong, P.; Kristroem, B.

    1999-06-01

    Previous studies have shown that the optimal forest rotation age increases considerably if the benefits of CO{sub 2} sequestration are included in rotation decisions. While these studies provide some guidelines for managing public forests, private forest owners may not choose the socially optimal rotation age. This paper discusses a regulation measure to increase CO{sub 2} sequestration in privately owned forests. The regulation problem is treated as a sequential game, where the regulator chooses a subsidy scheme and forest owners respond by changing rotation ages. A private forest owner receives a subsidy at the time of harvesting if he/she changes the rotation age towards the socially optimal one. The subsidy is proportional to the associated change in timber yield. The forest owner`s objective is to maximize the net present value of after-tax timber production profits and subsidies. The regulator`s decision problem is to find the subsidy rate that maximizes the net benefits of implementing the policy (the net of increased CO{sub 2} sequestration benefits, subsidy costs, and changes in forestry taxation income). Empirical results for Swedish examples show that the optimal subsidy rate is sensitive to the marginal benefit of CO{sub 2} sequestration, the social discount rate, and site quality. The optimal subsidy rate is found to be significantly lower than the marginal benefit of CO{sub 2} sequestration. With the proposed subsidy scheme, private forest owners will choose rotation ages longer than the Faustmann rotation, but significantly shorter than the socially optimal rotation age 21 refs, 6 tabs. Arbetsrapport 272

  9. Treatment for unstable pulmonary sequestration injury in patient with severe blunt trauma: A case report

    Directory of Open Access Journals (Sweden)

    Sakiko Hiraki

    2017-08-01

    Full Text Available Case: Pulmonary sequestration is a congenital malformation characterized by nonfunctioning tissue not communicating with the tracheobronchial tree. As the blood pressure in the artery feeding the sequestrated lung tissue is higher than that in the normal pulmonary artery, the risk of massive hemorrhage in pulmonary sequestration is high. We herein present the first case of a severe blunt trauma patient with unstable pulmonary sequestration injury. Outcome and conclusion: The mechanism of pulmonary sequestration injury is vastly different than that of injury to normal lung. We suggest that proximal feeding artery embolization should be performed before surgical intervention in patients with massive hemorrhage of pulmonary sequestration due to severe chest trauma. Keywords: Blunt trauma, Coil embolization, Massive hemorrhage, Pulmonary sequestration

  10. The sequestration switch. Removing industrial CO2 by direct ocean absorption

    International Nuclear Information System (INIS)

    Ametistova, Lioudmila; Briden, James; Twidell, John

    2002-01-01

    This review paper considers direct injection of industrial CO 2 emissions into the mid-water oceanic column below 500 m depth. Such a process is a potential candidate for switching atmospheric carbon emissions directly to long term sequestration, thereby relieving the intermediate atmospheric burden. Given sufficient research justification, the argument is that harmful impact in both the Atmosphere and the biologically rich upper marine layer could be reduced. The paper aims to estimate the role that active intervention, through direct ocean CO 2 storage, could play and to outline further research and assessment for the strategy to be a viable option for climate change mitigation. The attractiveness of direct ocean injection lies in its bypassing of the Atmosphere and upper marine region, its relative permanence, its practicability using existing technologies and its quantification. The difficulties relate to the uncertainty of some fundamental scientific issues, such as plume dynamics, lowered pH of the exposed waters and associated ecological impact, the significant energy penalty associated with the necessary engineering plant and the uncertain costs. Moreover, there are considerable uncertainties regarding related international marine law. Development of the process would require acceptance of the evidence for climate change, strict requirements for large industrial consumers of fossil fuel to reduce CO 2 emissions into the Atmosphere and scientific evidence for the overall beneficial impact of ocean sequestration

  11. Assessment of Brine Management for Geologic Carbon Sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Breunig, Hanna M. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Environmental Energy Technologies Division; Birkholzer, Jens T. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Environmental Energy Technologies Division; Borgia, Andrea [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Environmental Energy Technologies Division; Price, Phillip N. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Environmental Energy Technologies Division; Oldenburg, Curtis M. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Environmental Energy Technologies Division; McKone, Thomas E. [Lawrence Berkeley National Lab. (LBNL), Berkeley, CA (United States). Environmental Energy Technologies Division

    2013-06-13

    Geologic carbon sequestration (GCS) is the injection of carbon dioxide (CO2), typically captured from stationary emission sources, into deep geologic formations to prevent its entry into the atmosphere. Active pilot facilities run by regional United States (US) carbon sequestration partnerships inject on the order of one million metric tonnes (mt) CO2 annually while the US electric power sector emits over 2000 million mt-CO2 annually. GCS is likely to play an increasing role in US carbon mitigation initiatives, but scaling up GCS poses several challenges. Injecting CO2 into sedimentary basins raises fluid pressure in the pore space, which is typically already occupied by naturally occurring, or native, brine. The resulting elevated pore pressures increase the likelihood of induced seismicity, of brine or CO2 escaping into potable groundwater resources, and of CO2 escaping into the atmosphere. Brine extraction is one method for pressure management, in which brine in the injection formation is brought to the surface through extraction wells. Removal of the brine makes room for the CO2 and decreases pressurization. Although the technology required for brine extraction is mature, this form of pressure management will only be applicable if there are cost-­effective and sustainable methods of disposing of the extracted brine. Brine extraction, treatment, and disposal may increase the already substantial capital, energy, and water demands of Carbon dioxide Capture and Sequestration (CCS). But, regionally specific brine management strategies may be able to treat the extracted water as a source of revenue, energy, and water to subsidize CCS costs, while minimizing environmental impacts. By this approach, value from the extracted water would be recovered before disposing of any resulting byproducts. Until a price is placed on carbon, we expect that utilities and other CO2 sources will be

  12. [Expression of homeobox gene Msx-1, Msx-2 and Dlx-2 during murine mandibular first molar development].

    Science.gov (United States)

    Ma, Li; Chen, Zhi; Song, Guang-tai; Fan, Ming-wen; Zhang, Qi; Wang, Zhi-feng

    2003-11-01

    To observe the expression of homeobox gene Msx-1, Msx-2 and Dlx-2 during murine mandibular first molar development. The murine heads or mandibles on embryonic days 11-18 (E11-18) and postnatal day 1-3 (P1-3) were removed, fixed and embedded, 5 micro m serial sections were cut in the coronal plane. Msx-1, Msx-2 and Dlx-2 RNA probes were synthesized by in vitro transcription and labeled with digoxigenin. Msx-1, Msx-2 and Dlx-2 mRNA expression was observed after in situ hybridization. During molar development Msx-1 transcripts appeared only in mesenchymal cells, not in epithelial cells. Msx-2 and Dlx-2 both expressed in the epithelial and mesenchymal cells. At the initiation stage of the molar development Msx-2 and Dlx-2 had similar expression. At the bud stage (E13-14) Msx-2 mRNA signaling was intensive in the enamel organ and slight in the dental mesenchyme; Dlx-2 signaling was stronger in the dental papilla. At cap stage (E15-16) Msx-2 showed prominent mRNA signaling in enamel knot and Dlx-2 was maximal in the dental papilla. At the late bell stage (P2-3) Msx-2 transcripts were observed in odontoblasts but not labeled in ameloblasts, and Dlx-2 transcripts appeared in ameloblasts but no labeling was seen in odontoblasts. Msx-1, Msx-2 and Dlx-2 are expressed in various patterns during murine mandibular first molar development, suggesting they possibly play a role in the interaction between the epithelium and mesenchyme during the molar development.

  13. Hematopoietically-expressed homeobox gene three widely-evaluated polymorphisms and risk for diabetes: a meta-analysis.

    Directory of Open Access Journals (Sweden)

    Xiaobo Li

    Full Text Available BACKGROUND: The hematopoietically-expressed homeobox (HHEX gene is identified as a promising candidate for type 2 diabetes by genome-wide association studies, triggering plenty of subsequent replications; however, the results are conflicting. We therefore conducted a meta-analysis of three widely-evaluated polymorphisms in HHEX gene and diabetes risk. METHODOLOGY/PRINCIPAL FINDINGS: A random-effects model was adopted irrespective of heterogeneity. Data and study quality were assessed in duplicate. There were 49 studies (cases/controls: 57931/74658 for rs1111875, 18 studies (18227/30366 for rs5015480 and 26 studies (25725/30579 for rs7923837, respectively. Overall analyses indicated that rs1111875-C allele (odds ratio [OR] = 1.16; 95% confidence interval [CI]: 1.13-1.2; P<0.0005, rs5015480-C allele (OR = 1.16; 95% CI: 1.06-1.26; P = 0.001 and rs7923837-G allele (OR = 1.18; 95% CI: 1.12-1.24; P<0.0005 conferred significantly increased risk for type 2 diabetes, yet accompanying moderate to strong evidence of heterogeneity. Despite vast divergence in allele distributions, subgroup analyses by ethnicity showed comparable risk estimates between Asians and Caucasians for three examined polymorphisms. Moreover, results of studies with hospital-based controls deviated greatly from that of all qualified studies, especially for rs7923837-G allele carrying a doubled risk (OR = 1.37 versus 1.18. Furthermore, when only large studies (≥ 500 case-patients were considered, risk effects were identical to the overall estimates for three examined polymorphisms. The Begg's funnel plot and Egger's test indicated low probability of publication bias. CONCLUSIONS: Our results provide clarification to the significant association of rs1111875, rs5015480 and rs7923837 in HHEX gene with type 2 diabetes.

  14. The homeobox gene mirror links EGF signalling to embryonic dorso-ventral axis formation through notch activation.

    Science.gov (United States)

    Jordan, K C; Clegg, N J; Blasi, J A; Morimoto, A M; Sen, J; Stein, D; McNeill, H; Deng, W M; Tworoger, M; Ruohola-Baker, H

    2000-04-01

    Recent studies in vertebrates and Drosophila melanogaster have revealed that Fringe-mediated activation of the Notch pathway has a role in patterning cell layers during organogenesis. In these processes, a homeobox-containing transcription factor is responsible for spatially regulating fringe (fng) expression and thus directing activation of the Notch pathway along the fng expression border. Here we show that this may be a general mechanism for patterning epithelial cell layers. At three stages in Drosophila oogenesis, mirror (mirr) and fng have complementary expression patterns in the follicle-cell epithelial layer, and at all three stages loss of mirr enlarges, and ectopic expression of mirr restricts, fng expression, with consequences for follicle-cell patterning. These morphological changes are similar to those caused by Notch mutations. Ectopic expression of mirr in the posterior follicle cells induces a stripe of rhomboid (rho) expression and represses pipe (pip), a gene with a role in the establishment of the dorsal-ventral axis, at a distance. Ectopic Notch activation has a similar long-range effect on pip. Our results suggest that Mirror and Notch induce secretion of diffusible morphogens and we have identified TGF-beta (encoded by dpp) as such a molecule in germarium. We also found that mirr expression in dorsal follicle cells is induced by the EGF-receptor (EGFR) pathway and that mirr then represses pip expression in all but the ventral follicle cells, connecting EGFR activation in the dorsal follicle cells to repression of pip in the dorsal and lateral follicle cells. Our results suggest that the differentiation of ventral follicle cells is not a direct consequence of germline signalling, but depends on long-range signals from dorsal follicle cells, and provide a link between early and late events in Drosophila embryonic dorsal-ventral axis formation.

  15. MicroRNA-141 inhibits migration of gastric cancer by targeting zinc finger E-box-binding homeobox 2.

    Science.gov (United States)

    Du, Ying; Wang, Lingfei; Wu, Honghai; Zhang, Yiyin; Wang, Kan; Wu, Dingting

    2015-09-01

    Human microRNA (miR)-141 is a member of the miR‑200 family, which has been reported to be downregulated in gastric cancer, and involved in the proliferation of gastric cancer cells. However, little is currently known regarding its role in the migration of gastric cancer. The present study investigated the function of miR‑141 in gastric cancer cell migration, and evaluated the contribution of zinc finger E‑box‑binding homeobox 1 and 2 (ZEB1/2) in miR‑141 mediated migration of gastric cancer cells. The expression levels of miR‑141 and its potential ZEB1/2 targets were examined by quantitative polymerase chain reaction (qPCR) and western blotting, respectively. The migration of SGC‑7901 and HGC‑27 gastric cancer cells, which had been transfected with an miRNA precursor, was examined by cell migration and wound healing assays. A luciferase activity assay was used to validate whether ZEB1/2 was a direct target of miR‑141. The results demonstrated that overexpression of miR‑141 markedly inhibited the migration of gastric cancer cells in vitro. Forced overexpression of miR‑141 significantly reduced the luciferase activity of the 3'‑untranslated region of ZEB2 in gastric cancer cells. Furthermore, the mRNA and protein expression levels of ZEB2 were reduced in cells overexpressing miR‑141, whereas the protein expression levels of E‑cadherin were increased. In gastric tumor samples the expression levels of ZEB2 were inversely correlated with the expression of miR‑141. These results suggest that miR‑141 may be involved in the inhibition of gastric cancer cell migration, and that ZEB2 is a target gene of miR-141.

  16. Homeobox A7 increases cell proliferation by up-regulation of epidermal growth factor receptor expression in human granulosa cells

    Directory of Open Access Journals (Sweden)

    Yanase Toshihiko

    2010-06-01

    Full Text Available Abstract Background Homeobox (HOX genes encode transcription factors, which regulate cell proliferation, differentiation, adhesion, and migration. The deregulation of HOX genes is frequently associated with human reproductive system disorders. However, knowledge regarding the role of HOX genes in human granulosa cells is limited. Methods To determine the role of HOXA7 in the regulation and associated mechanisms of cell proliferation in human granulosa cells, HOXA7 and epidermal growth factor receptor (EGFR expressions were examined in primary granulosa cells (hGCs, an immortalized human granulosa cell line, SVOG, and a granulosa tumor cell line, KGN, by real-time PCR and Western blotting. To manipulate the expression of HOXA7, the HOXA7 specific siRNA was used to knockdown HOXA7 in KGN. Conversely, HOXA7 was overexpressed in SVOG by transfection with the pcDNA3.1-HOAX7 vector. Cell proliferation was measured by the MTT assay. Results Our results show that HOXA7 and EGFR were overexpressed in KGN cells compared to hGCs and SVOG cells. Knockdown of HOXA7 in KGN cells significantly decreased cell proliferation and EGFR expression. Overexpression of HOXA7 in SVOG cells significantly promoted cell growth and EGFR expression. Moreover, the EGF-induced KGN proliferation was abrogated, and the activation of downstream signaling was diminished when HOXA7 was knocked down. Overexpression of HOXA7 in SVOG cells had an opposite effect. Conclusions Our present study reveals a novel mechanistic role for HOXA7 in modulating granulosa cell proliferation via the regulation of EGFR. This finding contributes to the knowledge of the pro-proliferation effect of HOXA7 in granulosa cell growth and differentiation.

  17. Expression of the KNOTTED HOMEOBOX Genes in the Cactaceae Cambial Zone Suggests Their Involvement in Wood Development.

    Science.gov (United States)

    Reyes-Rivera, Jorge; Rodríguez-Alonso, Gustavo; Petrone, Emilio; Vasco, Alejandra; Vergara-Silva, Francisco; Shishkova, Svetlana; Terrazas, Teresa

    2017-01-01

    The vascular cambium is a lateral meristem that produces secondary xylem (i.e., wood) and phloem. Different Cactaceae species develop different types of secondary xylem; however, little is known about the mechanisms underlying wood formation in the Cactaceae. The KNOTTED HOMEOBOX (KNOX) gene family encodes transcription factors that regulate plant development. The role of class I KNOX genes in the regulation of the shoot apical meristem, inflorescence architecture, and secondary growth is established in a few model species, while the functions of class II KNOX genes are less well understood, although the Arabidopsis thaliana class II KNOX protein KNAT7 is known to regulate secondary cell wall biosynthesis. To explore the involvement of the KNOX genes in the enormous variability of wood in Cactaceae, we identified orthologous genes expressed in species with fibrous ( Pereskia lychnidiflora and Pilosocereus alensis ), non-fibrous ( Ariocarpus retusus ), and dimorphic ( Ferocactus pilosus ) wood. Both class I and class II KNOX genes were expressed in the cactus cambial zone, including one or two class I paralogs of KNAT1 , as well as one or two class II paralogs of KNAT3 - KNAT4 - KNAT5 . While the KNOX gene SHOOTMERISTEMLESS ( STM) and its ortholog ARK1 are expressed during secondary growth in the Arabidopsis and Populus stem, respectively, we did not find STM orthologs in the Cactaceae cambial zone, which suggests possible differences in the vascular cambium genetic regulatory network in these species. Importantly, while two class II KNOX paralogs from the KNAT7 clade were expressed in the cambial zone of A. retusus and F. pilosus , we did not detect KNAT7 ortholog expression in the cambial zone of P. lychnidiflora . Differences in the transcriptional repressor activity of secondary cell wall biosynthesis by the KNAT7 orthologs could therefore explain the differences in wood development in the cactus species.

  18. The zinc finger E-box-binding homeobox 1 (Zeb1) promotes the conversion of mouse fibroblasts into functional neurons.

    Science.gov (United States)

    Yan, Long; Li, Yue; Shi, Zixiao; Lu, Xiaoyin; Ma, Jiao; Hu, Baoyang; Jiao, Jianwei; Wang, Hongmei

    2017-08-04

    The zinc finger E-box-binding transcription factor Zeb1 plays a pivotal role in the epithelial-mesenchymal transition. Numerous studies have focused on the molecular mechanisms by which Zeb1 contributes to this process. However, the functions of Zeb1 beyond the epithelial-mesenchymal transition remain largely elusive. Using a transdifferentiation system to convert mouse embryonic fibroblasts (MEFs) into functional neurons via the neuronal transcription factors achaete-scute family bHLH (basic helix-loop-helix) transcription factor1 ( Ascl1 ), POU class 3 homeobox 2 (POU3F2/ Brn2 ), and neurogenin 2 (Neurog2, Ngn2 ) (ABN), we found that Zeb1 was up-regulated during the early stages of transdifferentiation. Knocking down Zeb1 dramatically attenuated the transdifferentiation efficiency, whereas Zeb1 overexpression obviously increased the efficiency of transdifferentiation from MEFs to neurons. Interestingly, Zeb1 improved the transdifferentiation efficiency induced by even a single transcription factor ( e.g. Asc1 or Ngn2 ). Zeb1 also rapidly promoted the maturation of induced neuron cells to functional neurons and improved the formation of neuronal patterns and electrophysiological characteristics. Induced neuron cells could form functional synapse in vivo after transplantation. Genome-wide RNA arrays showed that Zeb1 overexpression up-regulated the expression of neuron-specific genes and down-regulated the expression of epithelial-specific genes during conversion. Taken together, our results reveal a new role for Zeb1 in the transdifferentiation of MEFs into neurons. © 2017 by The American Society for Biochemistry and Molecular Biology, Inc.

  19. Limits to the potential of bio-fuels and bio-sequestration of carbon

    International Nuclear Information System (INIS)

    Pearman, Graeme I.

    2013-01-01

    This document examines bio-physical limits of bio-fuels and bio-sequestration of carbon by examining available solar radiation and observed efficiencies with which natural ecosystems and agricultural systems convert that energy to biomass. It compares these energy/carbon exchanges with national levels of energy use and carbon emissions for Australia, Brazil, China, Japan, Republic of Korea, New Zealand, Papua New Guinea, Singapore, Sweden, United Kingdom and United States. Globally primary energy consumption (related carbon emissions) is currently equivalent to ∼0.06% of the incident solar energy, and 43% of the energy (carbon) captured by photosynthesis. The nations fall into three categories. Those with primary energy consumption that is: 1–10% (Japan, Korea and Singapore); ∼0.1% (China, UK and the US) and; 0.1–0.01% (Australia, Brazil, Papua New Guinea, New Zealand and Sweden) of incident solar radiation. The percentage of energy captured in biomass follows this pattern, but generally lower by ∼3 orders of magnitude. The energy content of traded wheat, corn and rice represents conversion efficiencies of solar radiation of 0.08–0.17% and for sugar close to 1%, ignoring energy use in production and conversion of biomass to fuels. The study implies that bio-fuels or bio-sequestration can only be a small part of an inclusive portfolio of actions towards a low carbon future and minimised net emissions of carbon to the atmosphere. - Highlights: • Global energy consumption is ∼0.06% of solar; 43% of net primary production. • 11 nations studied fall into 3 groups: consumption/solar=1–10%; ∼0.1%; 0.1–0.01%. • % of energy captured in biomass is lower by ∼3 orders of magnitude. • Crops and natural ecosystems capture 0.1–0.3% and sugar 1% of solar energy. • Significant bio-energy/carbon sequestration via biomass is unrealistic

  20. Ectopic Expression of Homeobox Gene NKX2-1 in Diffuse Large B-Cell Lymphoma Is Mediated by Aberrant Chromatin Modifications

    Science.gov (United States)

    Nagel, Stefan; Ehrentraut, Stefan; Tomasch, Jürgen; Quentmeier, Hilmar; Meyer, Corinna; Kaufmann, Maren; Drexler, Hans G.; MacLeod, Roderick A. F.

    2013-01-01

    Homeobox genes encode transcription factors ubiquitously involved in basic developmental processes, deregulation of which promotes cell transformation in multiple cancers including hematopoietic malignancies. In particular, NKL-family homeobox genes TLX1, TLX3 and NKX2-5 are ectopically activated by chromosomal rearrangements in T-cell neoplasias. Here, using transcriptional microarray profiling and RQ-PCR we identified ectopic expression of NKL-family member NKX2-1, in a diffuse large B-cell lymphoma (DLBCL) cell line SU-DHL-5. Moreover, in silico analysis demonstrated NKX2-1 overexpression in 5% of examined DLBCL patient samples. NKX2-1 is physiologically expressed in lung and thyroid tissues where it regulates differentiation. Chromosomal and genomic analyses excluded rearrangements at the NKX2-1 locus in SU-DHL-5, implying alternative activation. Comparative expression profiling implicated several candidate genes in NKX2-1 regulation, variously encoding transcription factors, chromatin modifiers and signaling components. Accordingly, siRNA-mediated knockdown and overexpression studies confirmed involvement of transcription factor HEY1, histone methyltransferase MLL and ubiquitinated histone H2B in NKX2-1 deregulation. Chromosomal aberrations targeting MLL at 11q23 and the histone gene cluster HIST1 at 6p22 which we observed in SU-DHL-5 may, therefore, represent fundamental mutations mediating an aberrant chromatin structure at NKX2-1. Taken together, we identified ectopic expression of NKX2-1 in DLBCL cells, representing the central player in an oncogenic regulative network compromising B-cell differentiation. Thus, our data extend the paradigm of NKL homeobox gene deregulation in lymphoid malignancies. PMID:23637834

  1. Rapid evolution and copy number variation of primate RHOXF2, an X-linked homeobox gene involved in male reproduction and possibly brain function.

    Science.gov (United States)

    Niu, Ao-lei; Wang, Yin-qiu; Zhang, Hui; Liao, Cheng-hong; Wang, Jin-kai; Zhang, Rui; Che, Jun; Su, Bing

    2011-10-12

    Homeobox genes are the key regulators during development, and they are in general highly conserved with only a few reported cases of rapid evolution. RHOXF2 is an X-linked homeobox gene in primates. It is highly expressed in the testicle and may play an important role in spermatogenesis. As male reproductive system is often the target of natural and/or sexual selection during evolution, in this study, we aim to dissect the pattern of molecular evolution of RHOXF2 in primates and its potential functional consequence. We studied sequences and copy number variation of RHOXF2 in humans and 16 nonhuman primate species as well as the expression patterns in human, chimpanzee, white-browed gibbon and rhesus macaque. The gene copy number analysis showed that there had been parallel gene duplications/losses in multiple primate lineages. Our evidence suggests that 11 nonhuman primate species have one RHOXF2 copy, and two copies are present in humans and four Old World monkey species, and at least 6 copies in chimpanzees. Further analysis indicated that the gene duplications in primates had likely been mediated by endogenous retrovirus (ERV) sequences flanking the gene regions. In striking contrast to non-human primates, humans appear to have homogenized their two RHOXF2 copies by the ERV-mediated non-allelic recombination mechanism. Coding sequence and phylogenetic analysis suggested multi-lineage strong positive selection on RHOXF2 during primate evolution, especially during the origins of humans and chimpanzees. All the 8 coding region polymorphic sites in human populations are non-synonymous, implying on-going selection. Gene expression analysis demonstrated that besides the preferential expression in the reproductive system, RHOXF2 is also expressed in the brain. The quantitative data suggests expression pattern divergence among primate species. RHOXF2 is a fast-evolving homeobox gene in primates. The rapid evolution and copy number changes of RHOXF2 had been driven by

  2. A neuroanatomical and physiological study of the non-image forming visual system of the cone-rod homeobox gene (Crx) knock out mouse

    DEFF Research Database (Denmark)

    Rovsing, Louise; Rath, Martin F; Lund-Andersen, Casper

    2010-01-01

    The anatomy and physiology of the non-image forming visual system was investigated in a visually blind cone-rod homeobox gene (Crx) knock-out mouse (Crx(-)(/)(-)), which lacks the outer segments of the photoreceptors. We show that the suprachiasmatic nuclei (SCN) in the Crx(-/-) mouse exhibit...... melanopsin neurons or the SCN may be necessary for a normal function of the non-image forming system of the mouse. However, a change in the SCN of the Crx(-/-) mouse might also explain the observed circadian differences between the knock out mouse and wild type mouse....

  3. Rapid evolution and copy number variation of primate RHOXF2, an X-linked homeobox gene involved in male reproduction and possibly brain function

    Directory of Open Access Journals (Sweden)

    Zhang Rui

    2011-10-01

    Full Text Available Abstract Background Homeobox genes are the key regulators during development, and they are in general highly conserved with only a few reported cases of rapid evolution. RHOXF2 is an X-linked homeobox gene in primates. It is highly expressed in the testicle and may play an important role in spermatogenesis. As male reproductive system is often the target of natural and/or sexual selection during evolution, in this study, we aim to dissect the pattern of molecular evolution of RHOXF2 in primates and its potential functional consequence. Results We studied sequences and copy number variation of RHOXF2 in humans and 16 nonhuman primate species as well as the expression patterns in human, chimpanzee, white-browed gibbon and rhesus macaque. The gene copy number analysis showed that there had been parallel gene duplications/losses in multiple primate lineages. Our evidence suggests that 11 nonhuman primate species have one RHOXF2 copy, and two copies are present in humans and four Old World monkey species, and at least 6 copies in chimpanzees. Further analysis indicated that the gene duplications in primates had likely been mediated by endogenous retrovirus (ERV sequences flanking the gene regions. In striking contrast to non-human primates, humans appear to have homogenized their two RHOXF2 copies by the ERV-mediated non-allelic recombination mechanism. Coding sequence and phylogenetic analysis suggested multi-lineage strong positive selection on RHOXF2 during primate evolution, especially during the origins of humans and chimpanzees. All the 8 coding region polymorphic sites in human populations are non-synonymous, implying on-going selection. Gene expression analysis demonstrated that besides the preferential expression in the reproductive system, RHOXF2 is also expressed in the brain. The quantitative data suggests expression pattern divergence among primate species. Conclusions RHOXF2 is a fast-evolving homeobox gene in primates. The rapid

  4. Development of a 1 x N Fiber Optic Sensor Array for Carbon Sequestration Site Monitoring

    Energy Technology Data Exchange (ETDEWEB)

    Repasky, Kevin [Montana State Univ., Bozeman, MT (United States)

    2014-02-01

    provided opportunities for two graduate students to participate in research directly related to geologic carbon sequestration. Furthermore, commercialization of the technology developed is being pursued with five different companies via the Department of energy SBIR/STTR program

  5. Incorporation of lysosomal sequestration in the mechanistic model for prediction of tissue distribution of basic drugs.

    Science.gov (United States)

    Assmus, Frauke; Houston, J Brian; Galetin, Aleksandra

    2017-11-15

    The prediction of tissue-to-plasma water partition coefficients (Kpu) from in vitro and in silico data using the tissue-composition based model (Rodgers & Rowland, J Pharm Sci. 2005, 94(6):1237-48.) is well established. However, distribution of basic drugs, in particular into lysosome-rich lung tissue, tends to be under-predicted by this approach. The aim of this study was to develop an extended mechanistic model for the prediction of Kpu which accounts for lysosomal sequestration and the contribution of different cell types in the tissue of interest. The extended model is based on compound-specific physicochemical properties and tissue composition data to describe drug ionization, distribution into tissue water and drug binding to neutral lipids, neutral phospholipids and acidic phospholipids in tissues, including lysosomes. Physiological data on the types of cells contributing to lung, kidney and liver, their lysosomal content and lysosomal pH were collated from the literature. The predictive power of the extended mechanistic model was evaluated using a dataset of 28 basic drugs (pK a ≥7.8, 17 β-blockers, 11 structurally diverse drugs) for which experimentally determined Kpu data in rat tissue have been reported. Accounting for the lysosomal sequestration in the extended mechanistic model improved the accuracy of Kpu predictions in lung compared to the original Rodgers model (56% drugs within 2-fold or 88% within 3-fold of observed values). Reduction in the extent of Kpu under-prediction was also evident in liver and kidney. However, consideration of lysosomal sequestration increased the occurrence of over-predictions, yielding overall comparable model performances for kidney and liver, with 68% and 54% of Kpu values within 2-fold error, respectively. High lysosomal concentration ratios relative to cytosol (>1000-fold) were predicted for the drugs investigated; the extent differed depending on the lysosomal pH and concentration of acidic phospholipids among

  6. Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER

    Science.gov (United States)

    Mary E. Byrne; Andrew T. Groover; Joseph R. Fontana; Robert A. Martienssen

    2003-01-01

    Lateral organs in plants arise from the meristem in a stereotypical pattern known as phyllotaxy. Spiral patterns result from initiation of successive organs at a fixed angle of divergence but variable patterns of physical contact. Such patterns ultimately give rise to individual leaves and flowers at positions related to each other by consecutive terms in the...

  7. Red cell survival and sequestration in acute intermittent porphyria

    International Nuclear Information System (INIS)

    Nawalkha, P.L.; Soni, S.G.; Agrawal, V.K.; Misra, S.N.

    1980-01-01

    Life span and sequestration of red cells have been studied in twenty one proved cases of acute intermittent porphyria of different age and sex group from Bikaner District, Rajasthan State (India). Chromium-51 labelled red cells were used in the study and the excess count method of Bughe Jones and Szur was used to calculate the index of sequestration. The mean apparent half survival time of erythrocytes in the control subjects was 25.9 +- 2.9 (S.D.) days and the same in the prophyria patients was 27.0 +- 3.8 days. This shows that the life span of red cells is normal in both the patient and the control. Excess destruction of red blood cells was found to take place in either spleen or liver in the disease and no excess accumulation of erythrocytes occurred over spleen as compared to liver. (M.G.B.)

  8. Erosion of soil organic carbon: implications for carbon sequestration

    Science.gov (United States)

    Van Oost, Kristof; Van Hemelryck, Hendrik; Harden, Jennifer W.; McPherson, B.J.; Sundquist, E.T.

    2009-01-01

    Agricultural activities have substantially increased rates of soil erosion and deposition, and these processes have a significant impact on carbon (C) mineralization and burial. Here, we present a synthesis of erosion effects on carbon dynamics and discuss the implications of soil erosion for carbon sequestration strategies. We demonstrate that for a range of data-based parameters from the literature, soil erosion results in increased C storage onto land, an effect that is heterogeneous on the landscape and is variable on various timescales. We argue that the magnitude of the erosion term and soil carbon residence time, both strongly influenced by soil management, largely control the strength of the erosion-induced sink. In order to evaluate fully the effects of soil management strategies that promote carbon sequestration, a full carbon account must be made that considers the impact of erosion-enhanced disequilibrium between carbon inputs and decomposition, including effects on net primary productivity and decomposition rates.

  9. Trace metal mobilization in an experimental carbon sequestration scenario

    Energy Technology Data Exchange (ETDEWEB)

    Marcon, Virginia [University of Wyoming, Geology and Geophysics, Laramie, WY. 82070 (United States); Kaszuba, John [University of Wyoming, Geology and Geophysics, Laramie, WY. 82070 (United States); Univeristy of Wyoming, School of Energy Resources, Larmaie, WY. 82070 (United States)

    2013-07-01

    Mobilizing trace metals with injection of supercritical CO{sub 2} into deep saline aquifers is a concern for geologic carbon sequestration. Hydrothermal experiments investigate the release of harmful metals from two zones of a sequestration injection reservoir: at the cap-rock-reservoir boundary and deeper within the reservoir, away from the cap-rock. In both systems, Cd, Cr, Cu, Pb, and Zn behave in a similar manner, increasing in concentration with injection, but subsequently decreasing in concentration over time. SEM images and geochemical models indicate initial dissolution of minerals and precipitation of Ca-Mg-Fe carbonates, metal sulfides (i.e. Fe, As, Ag, and Co sulfides), and anhydrite in both systems. The results suggest that Ba, Cu, and Zn will not be contaminants of concern, but Pb, Fe, and As may require careful attention. (authors)

  10. Carbon storage and sequestration by trees in VIT University campus

    Science.gov (United States)

    Saral, A. Mary; SteffySelcia, S.; Devi, Keerthana

    2017-11-01

    The present study addresses carbon storage and sequestration by trees grown in VIT University campus, Vellore. Approximately twenty trees were selected from Woodstockarea. The above ground biomass and below ground biomass were calculated. The above ground biomass includes non-destructive anddestructive sampling. The Non-destructive method includes the measurement of height of thetree and diameter of the tree. The height of the tree is calculated using Total Station instrument and diameter is calculated using measuring tape. In the destructive method the weight of samples (leaves) and sub-samples (fruits, flowers) of the tree were considered. To calculate the belowground biomass soil samples are taken and analyzed. The results obtained were used to predict the carbon storage. It was found that out of twenty tree samples Millingtonia hortensis which is commonly known as Cork tree possess maximum carbon storage (14.342kg/tree) and carbon sequestration (52.583kg/tree) respectively.

  11. Occurrence and sequestration of toxins in food chains.

    Science.gov (United States)

    Mebs, D

    1998-11-01

    Animals may acquire toxicity by absorbing toxic compounds from their food, e.g. from plants or other animals. Sequestration and accumulation of toxins may provide protection from predators, which learn to avoid this prey because of unpleasant experiences such as bitter taste. This is a common phenomenon in marine as well as in terrestrial ecosystems. Moreover, toxins may enter food chains where they accumulate reaching high, often lethal concentrations. Palytoxin which had been primarily detected in marine zoanthids (Palythoa sp.), occurs also in a wide range of other animals, e.g. in sponges, corals, shellfish, polychaetes and crustaceans, but also in fish, which feed on crustaceans and zoanthids as well. These animals exhibit a high resistance to the toxin's action. The mechanisms which protect the Na+, K+-ATPase of their cell membranes, the primary target of palytoxin, is unknown. Sequestration of the toxin by other animals may cause health problems due to food poisoning.

  12. Carbon Sequestration Leadership Forum - the way forward for CCS

    Energy Technology Data Exchange (ETDEWEB)

    NONE

    2003-09-01

    The June 2003 issue of Ecoal briefly outlined events at the inaugural meeting of the Carbon Sequestration Leadership Forum (CSLF) held in Northern Virginia, USA between 23 and 25 June. This featured details on the CSLF Charter, the structure of the Forum, and specific coal industry recommendations to the CSLF. This report provides a more detailed account of issues covered at and arising from the meeting. 2 figs.

  13. The value of carbon sequestration and storage in coastal habitats

    Science.gov (United States)

    Beaumont, N. J.; Jones, L.; Garbutt, A.; Hansom, J. D.; Toberman, M.

    2014-01-01

    Coastal margin habitats are globally significant in terms of their capacity to sequester and store carbon, but their continuing decline, due to environmental change and human land use decisions, is reducing their capacity to provide this ecosystem service. In this paper the UK is used as a case study area to develop methodologies to quantify and value the ecosystem service of blue carbon sequestration and storage in coastal margin habitats. Changes in UK coastal habitat area between 1900 and 2060 are documented, the long term stocks of carbon stored by these habitats are calculated, and the capacity of these habitats to sequester CO2 is detailed. Changes in value of the carbon sequestration service of coastal habitats are then projected for 2000-2060 under two scenarios, the maintenance of the current state of the habitat and the continuation of current trends of habitat loss. If coastal habitats are maintained at their current extent, their sequestration capacity over the period 2000-2060 is valued to be in the region of £1 billion UK sterling (3.5% discount rate). However, if current trends of habitat loss continue, the capacity of the coastal habitats both to sequester and store CO2 will be significantly reduced, with a reduction in value of around £0.25 billion UK sterling (2000-2060; 3.5% discount rate). If loss-trends due to sea level rise or land reclamation worsen, this loss in value will be greater. This case study provides valuable site specific information, but also highlights global issues regarding the quantification and valuation of carbon sequestration and storage. Whilst our ability to value ecosystem services is improving, considerable uncertainty remains. If such ecosystem valuations are to be incorporated with confidence into national and global policy and legislative frameworks, it is necessary to address this uncertainty. Recommendations to achieve this are outlined.

  14. Biochar for soil fertility and natural carbon sequestration

    Science.gov (United States)

    Rostad, C.E.; Rutherford, D.W.

    2011-01-01

    Biochar is charcoal (similar to chars generated by forest fires) that is made for incorporation into soils to increase soil fertility while providing natural carbon sequestration. The incorporation of biochar into soils can preserve and enrich soils and also slow the rate at which climate change is affecting our planet. Studies on biochar, such as those cited by this report, are applicable to both fire science and soil science.

  15. Technological learning for carbon capture and sequestration technologies

    International Nuclear Information System (INIS)

    Riahi, Keywan; Rubin, Edward S.; Taylor, Margaret R.; Schrattenholzer, Leo; Hounshell, David

    2004-01-01

    This paper analyzes potentials of carbon capture and sequestration technologies (CCT) in a set of long-term energy-economic-environmental scenarios based on alternative assumptions for technological progress of CCT. In order to get a reasonable guide to future technological progress in managing CO 2 emissions, we review past experience in controlling sulfur dioxide (SO 2 ) emissions from power plants. By doing so, we quantify a 'learning curve' for CCT, which describes the relationship between the improvement of costs due to accumulation of experience in CCT construction. We incorporate the learning curve into the energy-modeling framework MESSAGE-MACRO and develop greenhouse gas emissions scenarios of economic, demographic, and energy demand development, where alternative policy cases lead to the stabilization of atmospheric CO 2 concentrations at 550 parts per million by volume (ppmv) by the end of the 21st century. We quantify three types of contributors to the carbon emissions mitigation: (1) demand reductions due to the increased price of energy, (2) fuel switching primarily away from coal, and (3) carbon capture and sequestration from fossil fuels. Due to the assumed technological learning, costs of the emissions reduction for CCT drop rapidly and in parallel with the massive introduction of CCT on the global scale. Compared to scenarios based on static cost assumptions for CCT, the contribution of carbon sequestration is about 50% higher in the case of learning, resulting in cumulative sequestration of CO 2 ranging from 150 to 250 billion (10 9 ) tons with carbon during the 21st century. Also, carbon values (tax) across scenarios (to meet the 550 ppmv carbon concentration constraint) are between 2% and 10% lower in the case of learning for CCT by 2100. The results illustrate that assumptions on technological change are a critical determinant of future characteristics of the energy system, indicating the importance of long-term technology policies in

  16. Intralobar bronchopulmonary sequestration: A case and brief review

    Directory of Open Access Journals (Sweden)

    Majumdar U

    2018-06-01

    Full Text Available Objective: Bronchopulmonary sequestration is a rare congenital abnormality of the lower respiratory tract, seen mostly in children but often in adults. The term implies a mass of lung tissue that has no function and lacks normal communication with the rest of the tracheobronchial tree. Case: A 40-year-old man presented with acute onset of left flank pain for 4 hours. He was born in Yemen and emigrated to the US in 1998; at that time, he had been tested for tuberculosis which was negative. In this admission, he met systemic inflammatory response (SIRS criteria and had basilar crackles in the left lower lobe of the lung. CT scan revealed a cavitary lesion with air-fluid level in the left lower lobe airspace. There was systemic arterial blood supply to this region arising off the celiac axis. He was diagnosed with an infected intralobar bronchopulmonary sequestration and underwent video-assisted thoracoscopic wedge resection. On follow up 3 months later, he was doing well. Discussion: Pulmonary sequestration is a rare congenital anomaly of a mass of lung tissue, which can have cystic changes and is a very important differential diagnosis of cavities in the lung. Confirmation of diagnosis is by visualization of a systemic vessel supplying sequestrated pulmonary, and this is accomplished by contrast-enhanced CT scan, MRI or invasive angiography. Conclusion: The delay in diagnosis in our patient was due to falling prey to anchoring and availability biases and chasing the diagnosis of tuberculosis in a patient from Yemen with a lower lobe cavitation.

  17. Molecular and Metabolic Mechanisms of Carbon Sequestration in Marine Thrombolites

    Science.gov (United States)

    Mobberley, Jennifer

    2013-01-01

    The overall goal of my dissertation project has been to examine the molecular processes underlying carbon sequestration in lithifying microbial ecosystems, known as thrombolitic mats, and assess their feasibility for use in bioregenerative life support systems. The results of my research and education efforts funded by the Graduate Student Researchers Program can be summarized in four peer-reviewed research publication, one educational publication, two papers in preparation, and six research presentations at local and national science meetings (see below for specific details).

  18. Potential Hydrogeomechanical Impacts of Geological CO2 Sequestration

    Science.gov (United States)

    McPherson, B. J.; Haerer, D.; Han, W.; Heath, J.; Morse, J.

    2006-12-01

    Long-term sequestration of anthropogenic "greenhouse gases" such as CO2 is a proposed approach to managing climate change. Deep brine reservoirs in sedimentary basins are possible sites for sequestration, given their ubiquitous nature. We used a mathematical sedimentary basin model, including coupling of multiphase CO2-groundwater flow and rock deformation, to evaluate residence times in possible brine reservoir storage sites, migration patterns and rates away from such sites, and effects of CO2 injection on fluid pressures and rock strain. Study areas include the Uinta and Paradox basins of Utah, the San Juan basin of New Mexico, and the Permian basin of west Texas. Regional-scale hydrologic and mechanical properties, including the presence of fracture zones, were calibrated using laboratory and field data. Our initial results suggest that, in general, long-term (~100 years or more) sequestration in deep brine reservoirs is possible, if guided by robust structural and hydrologic data. However, specific processes must be addressed to characterize and minimize risks. In addition to CO2 migration from target sequestration reservoirs into other reservoirs or to the land surface, another environmental issue is displacement of brines into freshwater aquifers. We evaluated the potential for such unintended aquifer contamination by displacement of brines out of adjacent sealing layers such as marine shales. Results suggest that sustained injection of CO2 may incur significant brine displacement out of adjacent sealing layers, depending on the injection history, initial brine composition, and hydrologic properties of both reservoirs and seals. Model simulations also suggest that as injection-induced overpressures migrate, effective stresses may follow this migration under some conditions, as will associated rock strain. Such "strain migration" may lead to induced or reactivated fractures or faults, but can be controlled through reservoir engineering.

  19. Environmental non-government organizations' perceptions of geologic sequestration

    International Nuclear Information System (INIS)

    Wong-Parodi, Gabrielle; Ray, Isha; Farrell, Alexander E

    2008-01-01

    Environmental non-governmental organizations (NGOs) have been influential in shaping public perceptions of environmental problems, their causes and potential solutions. Over the last decade, carbon capture and storage (CCS) has emerged as a potentially important technological response to climate change. In this paper we investigate how leading US NGOs perceive geologic sequestration, a potentially controversial part of CCS. We examine how and why their perceptions and strategies might differ, and if and how they plan to shape public perceptions of geologic sequestration. We approach these questions through semi-structured interviews with representatives from a range of NGOs, supplemented by content analysis of their documents. We find that while all the NGOs are committed to combating climate change, their views on CCS as a mitigation strategy vary considerably. We find that these views are correlated with NGOs' histories of activism and advocacy, as well as with their sources of funding. Overall, most of these NGOs accept the necessity of geologic sequestration, while only a small fraction do not

  20. Carbon sequestration, optimum forest rotation and their environmental impact

    Energy Technology Data Exchange (ETDEWEB)

    Kula, Erhun, E-mail: erhun.kula@bahcesehir.edu.tr [Department of Economics, Bahcesehir University, Besiktas, Istanbul (Turkey); Gunalay, Yavuz, E-mail: yavuz.gunalay@bahcesehir.edu.tr [Department of Business Studies, Bahcesehir University, Besiktas, Istanbul (Turkey)

    2012-11-15

    Due to their large biomass forests assume an important role in the global carbon cycle by moderating the greenhouse effect of atmospheric pollution. The Kyoto Protocol recognises this contribution by allocating carbon credits to countries which are able to create new forest areas. Sequestrated carbon provides an environmental benefit thus must be taken into account in cost-benefit analysis of afforestation projects. Furthermore, like timber output carbon credits are now tradable assets in the carbon exchange. By using British data, this paper looks at the issue of identifying optimum felling age by considering carbon sequestration benefits simultaneously with timber yields. The results of this analysis show that the inclusion of carbon benefits prolongs the optimum cutting age by requiring trees to stand longer in order to soak up more CO{sub 2}. Consequently this finding must be considered in any carbon accounting calculations. - Highlights: Black-Right-Pointing-Pointer Carbon sequestration in forestry is an environmental benefit. Black-Right-Pointing-Pointer It moderates the problem of global warming. Black-Right-Pointing-Pointer It prolongs the gestation period in harvesting. Black-Right-Pointing-Pointer This paper uses British data in less favoured districts for growing Sitka spruce species.

  1. CT imaging of splenic sequestration in sickle cell disease

    International Nuclear Information System (INIS)

    Sheth, S.; Piomelli, S.; Ruzal-Shapiro, C.; Berdon, W.E.

    2000-01-01

    Pooling of blood in the spleen is a frequent occurrence in children with sickle cell diseases, particularly in the first few years of life, resulting in what is termed ''splenic sequestration crisis.'' The spectrum of severity in this syndrome is wide, ranging from mild splenomegaly to massive enlargement, circulatory collapse, and even death. The diagnosis is usually clinical, based on the enlargement of the spleen with a drop in hemoglobin level by >2 g/dl, and it is rare that imaging studies are ordered. However, in the patient who presents to the emergency department with non-specific findings of an acute abdomen, it is important to recognize the appearance of sequestration on imaging studies. We studied seven patients utilizing contrast-enhanced CT scans and found two distinct patterns - multiple, peripheral, non-enhancing low-density areas or large, diffuse areas of low density in the majority of the splenic tissue. Although radiological imaging is not always necessary to diagnose splenic sequestration, in those situations where this diagnosis is not immediately obvious, it makes an important clarifying contribution. (orig.)

  2. Community perceptions of carbon sequestration: insights from California

    International Nuclear Information System (INIS)

    Wong-Parodi, Gabrielle; Ray, Isha

    2009-01-01

    Over the last decade, many energy experts have supported carbon sequestration as a viable technological response to climate change. Given the potential importance of sequestration in US energy policy, what might explain the views of communities that may be directly impacted by the siting of this technology? To answer this question, we conducted focus groups in two communities who were potentially pilot project sites for California's DOE-funded West Coast Regional Partnership (WESTCARB). We find that communities want a voice in defining the risks to be mitigated as well as the justice of the procedures by which the technology is implemented. We argue that a community's sense of empowerment is key to understanding its range of carbon sequestration opinions, where 'empowerment' includes the ability to mitigate community-defined risks of the technology. This sense of empowerment protects the community against the downside risk of government or corporate neglect, a risk that is rarely identified in risk assessments but that should be factored into assessment and communication strategies.

  3. Peatland geoengineering: an alternative approach to terrestrial carbon sequestration.

    Science.gov (United States)

    Freeman, Christopher; Fenner, Nathalie; Shirsat, Anil H

    2012-09-13

    Terrestrial and oceanic ecosystems contribute almost equally to the sequestration of ca 50 per cent of anthropogenic CO(2) emissions, and already play a role in minimizing our impact on Earth's climate. On land, the majority of the sequestered carbon enters soil carbon stores. Almost one-third of that soil carbon can be found in peatlands, an area covering just 2-3% of the Earth's landmass. Peatlands are thus well established as powerful agents of carbon capture and storage; the preservation of archaeological artefacts, such as ancient bog bodies, further attest to their exceptional preservative properties. Peatlands have higher carbon storage densities per unit ecosystem area than either the oceans or dry terrestrial systems. However, despite attempts over a number of years at enhancing carbon capture in the oceans or in land-based afforestation schemes, no attempt has yet been made to optimize peatland carbon storage capacity or even to harness peatlands to store externally captured carbon. Recent studies suggest that peatland carbon sequestration is due to the inhibitory effects of phenolic compounds that create an 'enzymic latch' on decomposition. Here, we propose to harness that mechanism in a series of peatland geoengineering strategies whereby molecular, biogeochemical, agronomical and afforestation approaches increase carbon capture and long-term sequestration in peat-forming terrestrial ecosystems.

  4. Multi-slice spiral CT diagnosis of arterial sequestration

    International Nuclear Information System (INIS)

    Yu Hong; Li Huimin; Liu Shiyuan; Xiao Xiangsheng

    2010-01-01

    Objective: The purpose of this study was to present the characteristic features on MSCT angiography of arterial sequestration. Methods: The MSCT images of 5 patients with arterial sequestration were retrospectively reviewed. All patients underwent MSCT contrast-enhanced angiography. 3D rendering was made to evaluate the lung parenchyma, bronchial system, and vascular anatomy. Results: All 5 cases demonstrated the anomalous systemic artery (ASA) as an isolated and tortuous artery arising from the descending thoracic aorta, taking a sigmoid course and running along with airway, entering the basal segments of the left lowed lobe. The inferior pulmonary vein (IPV) was significantly engorged. The typical AS was diagnosed in 4 patients. Its ASA intercrossed with the IPV and two branches entering segments 7 and 8 over the IPV, and two branches entering segments 9 and 10 under the IPV. The volume of involved lung shrunk with the artery markedly engorged. A characteristic avascular section was found between the pulmonary artery supplying area and the ASA supplying area, and the bronchi did not accompany the arteries. One was diagnosed atypical AS because of coexistence with bronchial atresia. Conclusion: The arterial sequestration had characteristic MSCT findings. The typical type can be definitely diagnosed, but the atypical type needs further three-dimensional analysis. (authors)

  5. Mesoscale carbon sequestration site screening and CCS infrastructure analysis.

    Science.gov (United States)

    Keating, Gordon N; Middleton, Richard S; Stauffer, Philip H; Viswanathan, Hari S; Letellier, Bruce C; Pasqualini, Donatella; Pawar, Rajesh J; Wolfsberg, Andrew V

    2011-01-01

    We explore carbon capture and sequestration (CCS) at the meso-scale, a level of study between regional carbon accounting and highly detailed reservoir models for individual sites. We develop an approach to CO(2) sequestration site screening for industries or energy development policies that involves identification of appropriate sequestration basin, analysis of geologic formations, definition of surface sites, design of infrastructure, and analysis of CO(2) transport and storage costs. Our case study involves carbon management for potential oil shale development in the Piceance-Uinta Basin, CO and UT. This study uses new capabilities of the CO(2)-PENS model for site screening, including reservoir capacity, injectivity, and cost calculations for simple reservoirs at multiple sites. We couple this with a model of optimized source-sink-network infrastructure (SimCCS) to design pipeline networks and minimize CCS cost for a given industry or region. The CLEAR(uff) dynamical assessment model calculates the CO(2) source term for various oil production levels. Nine sites in a 13,300 km(2) area have the capacity to store 6.5 GtCO(2), corresponding to shale-oil production of 1.3 Mbbl/day for 50 years (about 1/4 of U.S. crude oil production). Our results highlight the complex, nonlinear relationship between the spatial deployment of CCS infrastructure and the oil-shale production rate.

  6. Biophysical risks to carbon sequestration and storage in Australian drylands.

    Science.gov (United States)

    Nolan, Rachael H; Sinclair, Jennifer; Eldridge, David J; Ramp, Daniel

    2018-02-15

    Carbon abatement schemes that reduce land clearing and promote revegetation are now an important component of climate change policy globally. There is considerable potential for these schemes to operate in drylands which are spatially extensive. However, projects in these environments risk failure through unplanned release of stored carbon to the atmosphere. In this review, we identify factors that may adversely affect the success of vegetation-based carbon abatement projects in dryland ecosystems, evaluate their likelihood of occurrence, and estimate the potential consequences for carbon storage and sequestration. We also evaluate management strategies to reduce risks posed to these carbon abatement projects. Identified risks were primarily disturbances, including unplanned fire, drought, and grazing. Revegetation projects also risk recruitment failure, thereby failing to reach projected rates of sequestration. Many of these risks are dependent on rainfall, which is highly variable in drylands and susceptible to further variation under climate change. Resprouting vegetation is likely to be less vulnerable to disturbance and have faster recovery rates upon release from disturbance. We conclude that there is a strong impetus for identifying management strategies and risk reduction mechanisms for carbon abatement projects. Risk mitigation would be enhanced by effective co-ordination of mitigation strategies at scales larger than individual abatement project boundaries, and by implementing risk assessment throughout project planning and implementation stages. Reduction of risk is vital for maximising carbon sequestration of individual projects and for reducing barriers to the establishment of new projects entering the market. Copyright © 2017 Elsevier Ltd. All rights reserved.

  7. Carbon sequestration, optimum forest rotation and their environmental impact

    International Nuclear Information System (INIS)

    Kula, Erhun; Gunalay, Yavuz

    2012-01-01

    Due to their large biomass forests assume an important role in the global carbon cycle by moderating the greenhouse effect of atmospheric pollution. The Kyoto Protocol recognises this contribution by allocating carbon credits to countries which are able to create new forest areas. Sequestrated carbon provides an environmental benefit thus must be taken into account in cost–benefit analysis of afforestation projects. Furthermore, like timber output carbon credits are now tradable assets in the carbon exchange. By using British data, this paper looks at the issue of identifying optimum felling age by considering carbon sequestration benefits simultaneously with timber yields. The results of this analysis show that the inclusion of carbon benefits prolongs the optimum cutting age by requiring trees to stand longer in order to soak up more CO 2 . Consequently this finding must be considered in any carbon accounting calculations. - Highlights: ► Carbon sequestration in forestry is an environmental benefit. ► It moderates the problem of global warming. ► It prolongs the gestation period in harvesting. ► This paper uses British data in less favoured districts for growing Sitka spruce species.

  8. Global patterns of aboveground carbon stock and sequestration in mangroves

    Directory of Open Access Journals (Sweden)

    GUSTAVO C.D. ESTRADA

    Full Text Available ABSTRACT In order to contribute to understand the factors that control the provisioning of the ecosystem service of carbon storage by mangroves, data on carbon stock and sequestration in the aboveground biomass (AGB from 73 articles were averaged and tested for the dependence on latitude, climatic parameters, physiographic types and age. Global means of carbon stock (78.0 ± 64.5 tC.ha-1 and sequestration (2.9 ± 2.2 tC.ha-1.yr-1 showed that mangroves are among the forest ecosystems with greater capacity of carbon storage in AGB per area. On the global scale, carbon stock increases toward the equator (R²=0.22 and is dependent on 13 climatic parameters, which can be integrated in the following predictive equation: Carbon Stock in AGB = -16.342 + (8.341 x Isothermality + (0.021 x Annual Precipitation [R²=0.34; p < 0.05]. It was shown that almost 70% of carbon stock variability is explained by age. Carbon stock and sequestration also vary according to physiographic types, indicating the importance of hydroperiod and edaphic parameters to the local variability of carbon stock. By demonstrating the contribution of local and regional-global factors to carbon stock, this study provides information to the forecast of the effects of future climate changes and local anthropogenic forcings on this ecosystem service.

  9. Carbon sequestration in agricultural soils: a potential carbon trading opportunity?

    International Nuclear Information System (INIS)

    Cowie, Annette L.; Murphy, Brian; Rawson, Andrew; Wilson, Brian; Singh, Bhupinderpal; Young, Rick; Grange, Ian

    2007-01-01

    Full text: Emissions trading schemes emerging in Australia and internationally create a market mechanism by which release of greenhouse gases incurs a cost, and implementation of abatement measures generates a financial return. There is growing interest amongst Australian landholders in emissions trading based on sequestration of carbon in soil through modified land management practices. Intensively cropped soils have low carbon content, due to disturbance, erosion and regular periods of minimal organic matter input. Because cropping soils in Australia have lost a substantial amount of carbon there is significant potential to increase carbon stocks through improved land management practices. Evidence from long term trials and modelling indicates that modified cropping practices (direct drilling, stubble retention, controlled traffic) have limited impact on soil carbon (0 to +2 tC02e ha-' year1) whereas conversion from cropping to pasture gives greater increases. Small-increases in soil carbon over large areas can contribute significantly to mitigation of Australia's greenhouse gas emissions. Furthermore, increase in soil organic matter will improve soil health, fertility and resilience. However, the inclusion of soil carbon offsets in an emissions trading scheme cannot occur until several barriers are overcome. The first relates to credibility. Quantification of the extent to which specific land management practices can sequester carbon in different environments will provide the basis for promotion of the concept. Current research across Australia is addressing this need. Secondly, cost-effective and accepted methods of estimating soil carbon change must be available. Monitoring soil carbon to document change on a project scale is not viable due to the enormous variability in carbon stocks on micro and macro scales. Instead estimation of soil carbon change could be undertaken through a combination of baseline measurement to assess the vulnerability of soil carbon

  10. Private valuation of carbon sequestration in forest plantations

    Energy Technology Data Exchange (ETDEWEB)

    Guitart, A. Bussoni [Facultad de Agronomia, Universidad de la Republica. Avda. E. Garzon, 780, CP 12.900, Montevideo (Uruguay); Rodriguez, L.C. Estraviz [Escola Superior de Agricultura ' ' Luiz de Queiroz' ' , Universidad de Sao, Paulo (Brazil)

    2010-01-15

    Approval of the Clean Development Mechanism, provided for in the Kyoto Protocol, enables countries with afforested land to trade in carbon emissions reduction certificates related to carbon dioxide equivalent quantities (CO{sub 2-e}) stored within a certain forest area. Potential CO{sub 2-e} above base line sequestration was determined for two forest sites on commercial eucalyptus plantations in northern Brazil (Bahia). Compensation values for silvicultural regimes involving rotation lengths greater than economically optimal were computed using the Faustmann formula. Mean values obtained were US$8.16 (MgCO{sub 2-e}){sup -} {sup 1} and US$7.19 (MgCO{sub 2-e}){sup -} {sup 1} for average and high site indexes, respectively. Results show that carbon supply is more cost-efficient in highly productive sites. Annuities of US$18.8 Mg C{sup -} {sup 1} and US$35.1 Mg C{sup -} {sup 1} and yearly payments of US$4.4 m{sup -} {sup 3} and US$8.2 m{sup -} {sup 3} due for each marginal cubic meter produced were computed for high and average sites, respectively. The estimated value of the tonne of carbon defines minimum values to be paid to forest owners, in order to induce a change in silvicultural management regimes. A reduction of carbon supply could be expected as a result of an increase in wood prices, although it would not respond in a regular manner. For both sites, price elasticity of supply was found to be inelastic and increased as rotation length moved further away from economically optimal: 0.24 and 0.27 for age 11 years in average- and high-productivity sites, respectively. This would be due to biomass production potential as a limiting factor; beyond a certain threshold value, an increase in price does not sustain a proportional change in carbon storage supply. The environmental service valuation model proposed might be adequate for assessing potential supply in plantation forestry, from a private landowner perspective, with an economic opportunity cost. The model is

  11. Mechanisms of aqueous wollastonite carbonation as a possible CO2 sequestration process

    International Nuclear Information System (INIS)

    Huijgen, W.J.J.; Comans, R.N.J.; Witkamp, G.J.

    2006-02-01

    The mechanisms of aqueous wollastonite carbonation as a possible carbon dioxide sequestration process were investigated experimentally by systematic variation of the reaction temperature, CO2 pressure, particle size, reaction time, liquid to solid ratio and agitation power. The carbonation reaction was observed to occur via the aqueous phase in two steps: (1) Ca leaching from the CaSiO3 matrix and (2) CaCO3 nucleation and growth. Leaching is hindered by a Ca-depleted silicate rim resulting from incongruent Ca-dissolution. Two temperature regimes were identified in the overall carbonation process. At temperatures below an optimum reaction temperature, the overall reaction rate is probably limited by the leaching rate of Ca. At higher temperatures, nucleation and growth of calcium carbonate is probably limiting the conversion, due to a reduced (bi)carbonate activity. The mechanisms for the aqueous carbonation of wollastonite were shown to be similar to those reported previously for an industrial residue and a Mg-silicate. The carbonation of wollastonite proceeds rapidly relative to Mg-silicates, with a maximum conversion in 15 min of 70% at 200C, 20 bar CO2 partial pressure and a particle size of <38 μm. The obtained insight in the reaction mechanisms enables the energetic and economic assessment of CO2 sequestration by wollastonite carbonation, which forms an essential next step in its further development

  12. Mycorrhizae Alter Toxin Sequestration and Performance of Two Specialist Herbivores

    Directory of Open Access Journals (Sweden)

    Amanda R. Meier

    2018-04-01

    Full Text Available Multitrophic species interactions are shaped by both top-down and bottom-up factors. Belowground symbionts of plants, such as arbuscular mycorrhizal fungi (AMF, can alter the strength of these forces by altering plant phenotype. For example, AMF-mediated changes in foliar toxin and nutrient concentrations may influence herbivore growth and fecundity. In addition, many specialist herbivores sequester toxins from their host plants to resist natural enemies, and the extent of sequestration varies with host plant secondary chemistry. Therefore, by altering plant phenotype, AMF may affect both herbivore performance and their resistance to natural enemies. We examined how inoculation of plants with AMF influences toxin sequestration and performance of two specialist herbivores feeding upon four milkweed species (Asclepias incarnata, A. curassavica, A. latifolia, A. syriaca. We raised aphids (Aphis nerii and caterpillars (Danaus plexippus on plants for 6 days in a fully factorial manipulation of milkweed species and level of AMF inoculation (zero, medium, and high. We then assessed aphid and caterpillar sequestration of toxins (cardenolides and performance, and measured defensive and nutritive traits of control plants. Aphids and caterpillars sequestered higher concentrations of cardenolides from plants inoculated with AMF across all milkweed species. Aphid per capita growth rates and aphid body mass varied non-linearly with increasing AMF inoculum availability; across all milkweed species, aphids had the lowest performance under medium levels of AMF availability and highest performance under high AMF availability. In contrast, caterpillar survival varied strongly with AMF availability in a plant species-specific manner, and caterpillar growth was unaffected by AMF. Inoculation with AMF increased foliar cardenolide concentrations consistently among milkweed species, but altered aboveground biomasses and foliar phosphorous concentrations in a plant

  13. THERMODYNAMIC ANALYSIS OF CARBON SEQUESTRATION METHODS IN LIGNITE POWER PLANTS

    International Nuclear Information System (INIS)

    Koroneos J. Christopher; Sakiltzis Christos; Rovas C. Dimitrios

    2008-01-01

    The green house effect is a very pressing issue of our times due to the big impact it will have in the future of life in our planet. The temperature increase of the earth which is the major impact of the greenhouse effect may change forever the climate and the way of life in many countries. It may lead to the reduction of agricultural production and at the end to famine, in several nations. The minimization of CO2 emissions and the introduction of new energy sources is the only solution to the catastrophe that is coming if inaction prevails. The objective of this work is to analyze the methods of the CO2 removal from the flue gases of power plants that use solid fuels. It is especially fit to the Greek conditions where the main fuel used is lignite. Three methods have been examined and compared thermodynamically. These are: (a) Removal of CO2 from the flue gas stream by absorption, (b) The combustion of lignite with pure oxygen and (c) The gasification of lignite. The lignite used in the analysis is the Greek lignite, produced at the Western Macedonia mines. The power plant, before carbon sequestration, has an efficiency of 39%, producing 330MW of electric power. After sequestration, the CO2 is compressed to pressures between 80-110 atm, before its final disposal. In the first method, the sequestration of CO2 is done utilizing a catalyst. The operation requires electricity and high thermal load which is received from low pressure steam extracted from the turbines. Additionally, electricity is required for the compression of the CO2 to 100 bars. This leads to a lower efficiency of the power plant by by 13%. In the second method, the lignite combustion is done with pure O2 produced at an air separation unit. The flue gasses are made up of CO2 and water vapor. This method requires electricity for carbon dioxide compression and the Air Separation unit, thus, the power plant efficiency is lowered by 26%. In the lignite gasification method, the products are a mixture of

  14. Analysis and Comparison of Carbon Capture & Sequestration Policies

    Science.gov (United States)

    Burton, E.; Ezzedine, S. M.; Reed, J.; Beyer, J. H.; Wagoner, J. L.

    2010-12-01

    Several states and countries have adopted or are in the process of crafting policies to enable geologic carbon sequestration projects. These efforts reflect the recognition that existing statutory and regulatory frameworks leave ambiguities or gaps that elevate project risk for private companies considering carbon sequestration projects, and/or are insufficient to address a government’s mandate to protect the public interest. We have compared the various approaches that United States’ state and federal governments have taken to provide regulatory frameworks to address carbon sequestration. A major purpose of our work is to inform the development of any future legislation in California, should it be deemed necessary to meet the goals of Assembly Bill 1925 (2006) to accelerate the adoption of cost-effective geologic sequestration strategies for the long-term management of industrial carbon dioxide in the state. Our analysis shows a diverse issues are covered by adopted and proposed carbon capture and sequestration (CCS) legislation and that many of the new laws focus on defining regulatory frameworks for underground injection of CO2, ambiguities in property issues, or assigning legal liability. While these approaches may enable the progress of early projects, future legislation requires a longer term and broader view that includes a quantified integration of CCS into a government’s overall climate change mitigation strategy while considering potentially counterproductive impacts on CCS of other climate change mitigation strategies. Furthermore, legislation should be crafted in the context of a vision for CCS as an economically viable and widespread industry. While an important function of new CCS legislation is enabling early projects, it must be kept in mind that applying the same laws or protocols in the future to a widespread CCS industry may result in business disincentives and compromise of the public interest in mitigating GHG emissions. Protection of the

  15. Multiphase Flow in Porous Media with Emphasis on Co2 Sequestration

    International Nuclear Information System (INIS)

    Be, Alif

    2011-01-01

    Numerical simulation has been used to predict multiphase flow in porous media. It is of great importance to incorporate accurate flow properties to obtain a proper simulation result thus reducing the risk of making wrong decision. Relative permeability and capillary pressure are important key parameters in multiphase flow as they describe how different fluid will interact in porous media. It is even more important in the case of three-phase flow as there are more fluid phases interact in the system. In most of the three-phase flow studies, capillary pressure has been neglected due to the lack of measured data and assumption that its effect is negligible. In other cases, two-phase capillary pressure has been used instead to describe the process in the system. This study will try to show how significant the impact of three-phase capillary pressure using different rock wettability. The three-phase capillary pressure surfaces are generated using a network model. Prior research shows that rock wettability is altered during Co2 sequestration due to the formation of carbonic acid (H2CO3) which leads to lower ph. In this study the effect of wettability alteration is incorporated to assess the safety of Johansen formation which is a good candidate for Co2 sequestration project. In addition, the wettability alteration effect to different flow parameters such as heterogeneity, solubility and diffusion is investigated. This thesis consists of two parts; the first part presents a theoretical background for the work, and the second part is a collection of papers. The papers are grouped into two main topics. The first three papers are discussing about three-phase flow simulation in porous media. The rest are discussing about wettability alteration during Co2 sequestration. Chapter 2 and 3 of the theoretical background include definitions and descriptions of interfacial tension, wettability, capillary pressure, relative permeability and hysteresis. Network model and technique for

  16. The MSX1 homeobox transcription factor is a downstream target of PHOX2B and activates the Delta-Notch pathway in neuroblastoma

    International Nuclear Information System (INIS)

    Revet, Ingrid; Huizenga, Gerda; Chan, Alvin; Koster, Jan; Volckmann, Richard; Sluis, Peter van; Ora, Ingrid; Versteeg, Rogier; Geerts, Dirk

    2008-01-01

    Neuroblastoma is an embryonal tumour of the peripheral sympathetic nervous system (SNS). One of the master regulator genes for peripheral SNS differentiation, the homeobox transcription factor PHOX2B, is mutated in familiar and sporadic neuroblastomas. Here we report that inducible expression of PHOX2B in the neuroblastoma cell line SJNB-8 down-regulates MSX1, a homeobox gene important for embryonic neural crest development. Inducible expression of MSX1 in SJNB-8 caused inhibition of both cell proliferation and colony formation in soft agar. Affymetrix micro-array and Northern blot analysis demonstrated that MSX1 strongly up-regulated the Delta-Notch pathway genes DLK1, NOTCH3, and HEY1. In addition, the proneural gene NEUROD1 was down-regulated. Western blot analysis showed that MSX1 induction caused cleavage of the NOTCH3 protein to its activated form, further confirming activation of the Delta-Notch pathway. These experiments describe for the first time regulation of the Delta-Notch pathway by MSX1, and connect these genes to the PHOX2B oncogene, indicative of a role in neuroblastoma biology. Affymetrix micro-array analysis of a neuroblastic tumour series consisting of neuroblastomas and the more benign ganglioneuromas showed that MSX1, NOTCH3 and HEY1 are more highly expressed in ganglioneuromas. This suggests a block in differentiation of these tumours at distinct developmental stages or lineages

  17. The evolution of Msx gene function: expression and regulation of a sea urchin Msx class homeobox gene.

    Science.gov (United States)

    Dobias, S L; Ma, L; Wu, H; Bell, J R; Maxson, R

    1997-01-01

    Msx- class homeobox genes, characterized by a distinct and highly conserved homeodomain, have been identified in a wide variety of metazoans from vertebrates to coelenterates. Although there is evidence that they participate in inductive tissue interactions that underlie vertebrate organogenesis, including those that pattern the neural crest, there is little information about their function in simple deuterostomes. Both to learn more about the ancient function of Msx genes, and to shed light on the evolution of developmental mechanisms within the lineage that gave rise to vertebrates, we have isolated and characterized Msx genes from ascidians and echinoderms. Here we describe the sequence and expression of a sea urchin (Strongylocentrotus purpouratus) Msx gene whose homeodomain is very similar to that of vertebrate Msx2. This gene, designated SpMsx, is first expressed in blastula stage embryos, apparently in a non-localized manner. Subsequently, during the early phases of gastrulation, SpMsx transcripts are expressed intensely in the invaginating archenteron and secondary mesenchyme, and at reduced levels in the ectoderm. In the latter part of gastrulation, SpMsx transcripts are concentrated in the oral ectoderm and gut, and continue to be expressed at those sites through the remainder of embryonic development. That vertebrate Msx genes are regulated by inductive tissue interactions and growth factors suggested to us that the restriction of SpMsx gene expression to the oral ectoderm and derivatives of the vegetal plate might similarly be regulated by the series of signaling events that pattern these embryonic territories. As a first test of this hypothesis, we examined the influence of exogastrulation and cell-dissociation on SpMsx gene expression. In experimentally-induced exogastrulae, SpMsx transcripts were distributed normally in the oral ectoderm, evaginated gut, and secondary mesenchyme. However, when embryos were dissociated into their component cells, Sp

  18. Mouse transgenesis identifies conserved functional enhancers and cis-regulatory motif in the vertebrate LIM homeobox gene Lhx2 locus.

    Directory of Open Access Journals (Sweden)

    Alison P Lee

    Full Text Available The vertebrate Lhx2 is a member of the LIM homeobox family of transcription factors. It is essential for the normal development of the forebrain, eye, olfactory system and liver as well for the differentiation of lymphoid cells. However, despite the highly restricted spatio-temporal expression pattern of Lhx2, nothing is known about its transcriptional regulation. In mammals and chicken, Crb2, Dennd1a and Lhx2 constitute a conserved linkage block, while the intervening Dennd1a is lost in the fugu Lhx2 locus. To identify functional enhancers of Lhx2, we predicted conserved noncoding elements (CNEs in the human, mouse and fugu Crb2-Lhx2 loci and assayed their function in transgenic mouse at E11.5. Four of the eight CNE constructs tested functioned as tissue-specific enhancers in specific regions of the central nervous system and the dorsal root ganglia (DRG, recapitulating partial and overlapping expression patterns of Lhx2 and Crb2 genes. There was considerable overlap in the expression domains of the CNEs, which suggests that the CNEs are either redundant enhancers or regulating different genes in the locus. Using a large set of CNEs (810 CNEs associated with transcription factor-encoding genes that express predominantly in the central nervous system, we predicted four over-represented 8-mer motifs that are likely to be associated with expression in the central nervous system. Mutation of one of them in a CNE that drove reporter expression in the neural tube and DRG abolished expression in both domains indicating that this motif is essential for expression in these domains. The failure of the four functional enhancers to recapitulate the complete expression pattern of Lhx2 at E11.5 indicates that there must be other Lhx2 enhancers that are either located outside the region investigated or divergent in mammals and fishes. Other approaches such as sequence comparison between multiple mammals are required to identify and characterize such enhancers.

  19. CO2 emissions abatement and geologic sequestration - industrial innovations and stakes - status of researches in progress

    International Nuclear Information System (INIS)

    2005-01-01

    This colloquium was jointly organized by the French institute of petroleum (IFP), the French agency of environmental and energy mastery (Ademe) and the geological and mining research office (BRGM). This press kit makes a status of the advances made in CO 2 emissions abatement and geological sequestration: technological advances of CO 2 capture and sequestration, geological reservoir dimensioning with respect to the problem scale, duration of such an interim solution, CO 2 emissions abatement potentialities of geological sequestration, regulatory, economical and financial implications, international stakes of greenhouse gas emissions. This press kit comprises a press release about the IFP-Ademe-BRGM colloquium, a slide presentation about CO 2 abatement and sequestration, and four papers: a joint IFP-Ademe-BRGM press conference, IFP's answers to CO 2 emissions abatement, Ademe's actions in CO 2 abatement and sequestration, and BRGM's experience in CO 2 sequestration and climatic change expertise. (J.S.)

  20. Complex epigenetic regulation of engrailed-2 (EN-2) homeobox gene in the autism cerebellum.

    Science.gov (United States)

    James, S J; Shpyleva, Svitlana; Melnyk, Stepan; Pavliv, Oleksandra; Pogribny, I P

    2013-02-19

    The elucidation of epigenetic alterations in the autism brain has potential to provide new insights into the molecular mechanisms underlying abnormal gene expression in this disorder. Given strong evidence that engrailed-2 (EN-2) is a developmentally expressed gene relevant to cerebellar abnormalities and autism, the epigenetic evaluation of this candidate gene was undertaken in 26 case and control post-mortem cerebellar samples. Assessments included global DNA methylation, EN-2 promoter methylation, EN-2 gene expression and EN-2 protein levels. Chromatin immunoprecipitation was used to evaluate trimethylation status of histone H3 lysine 27 (H3K27) associated with gene downregulation and histone H3 lysine 4 (H3K4) associated with gene activation. The results revealed an unusual pattern of global and EN-2 promoter region DNA hypermethylation accompanied by significant increases in EN-2 gene expression and protein levels. Consistent with EN-2 overexpression, histone H3K27 trimethylation mark in the EN-2 promoter was significantly decreased in the autism samples relative to matched controls. Supporting a link between reduced histone H3K27 trimethylation and increased EN-2 gene expression, the mean level of histone H3K4 trimethylation was elevated in the autism cerebellar samples. Together, these results suggest that the normal EN-2 downregulation that signals Purkinje cell maturation during late prenatal and early-postnatal development may not have occurred in some individuals with autism and that the postnatal persistence of EN-2 overexpression may contribute to autism cerebellar abnormalities.

  1. Three-decade long fertilization-induced soil organic carbon sequestration depends on edaphic characteristics in six typical croplands

    Science.gov (United States)

    Liang, Feng; Li, Jianwei; Yang, Xueyun; Huang, Shaomin; Cai, Zejiang; Gao, Hongjun; Ma, Junyong; Cui, Xian; Xu, Minggang

    2016-08-01

    Fertilizations affect soil organic carbon (SOC) content but the relative influences of the edaphic and climate factors on SOC storage are rarely studied across wide spatiotemporal scales. This study synthesized long-term datasets of fertilization experiments in six typical Chinese croplands, and calculated annual C input from crops and manure amendments, changes in SOC storage (ΔSOC) and C sequestration efficiency (i.e. the percentage of soil C change per unit of C input, hereafter referred as CSE) in 0-20 cm soil over three decades. Three fertilization treatments include no fertilization (CK), chemical nitrogen, phosphorus and potassium fertilizers (NPK) and combined chemical fertilizers and manure (NPKM). Results showed significant fertilization effects on C input and ΔSOC (NPKM>NPK>CK), and significantly higher CSE in Qiyang at Hunan than Zhengzhou at Henan and Heihe at Heilongjiang. The variance partitioning analysis (VPA) showed more variance of CSE can be explained by edaphic factors (up to 39.7%) than other factors. Furthermore, soil available N content and pH were identified as the major soil properties explaining CSE variance. This study demonstrated key controls of soil fertility factors on SOC sequestration and informs the need to develop strategic soil management plan to promote soil carbon sequestration under long-term intensive fertilization.

  2. The Influence of Seal Properties on Pressure Buildup and Leakage of Carbon Dioxide from Sequestration Reservoirs (Invited)

    Science.gov (United States)

    Benson, S. M.; Chabora, E.

    2009-12-01

    The transport properties of seals, namely permeability, relative permeability, and capillary pressure control both migration of carbon dioxide and brine through the seal. Only recently has the the importance of brine migration emerged as key issue in the environmental performance of carbon dioxide sequestration projects. In this study we use numerical simulation to show that brine migration through the seal can be either advantageous or deleterious to the environmental performance of a carbon dioxide sequestration project. Brine migration through the seal can lower the pressure buildup in the storage reservoir, thereby reducing the risk of leakage or geomechanical stresses on the seal. On the other hand, if the seal is penetrated by a permeable fault it can lead to focused flow up a fault, which could lead to brine migration into drinking water aquifers. We also show that as the carbon dioxide plume grows, brine flow undergoes a complex evolution from upward flow to downward flows driven by countercurrent migration of carbon dioxide and brine in the seal and capillary pressure gradients at the base of the seal. Finally, we discuss desirable attributes seals, taking into account both carbon dioxide and brine migration through the seal. In particular, identifying seals that provide an effective capillary barrier to block the flow of carbon dioxide while allowing some brine migration through the seal can help to control pressure buildup and allow more efficient utilization of a sequestration reservoir. This could be particularly important in those settings that may be limited by the maximum allowable pressure buildup.

  3. Carbon Sequestration Potential in Mesozoic Rift Basins Offshore the US East Coast: Teaching Old Seismic Data New Tricks

    Science.gov (United States)

    Fortin, W.; Goldberg, D.; Hutchinson, D. R.; Slagle, A. L.

    2017-12-01

    Motivated by rising atmospheric CO2 levels and recent developments in sequestration and seismic processing technologies, studies addressing the feasibility of offshore carbon sequestration are ongoing. The subsurface off the US east coast offers a few potential storage reservoirs including sedimentary layers as well as buried Mesozoic rift basins. Marine seismic reflection data first identified these features in the 1970s and are now being revisited as potential sequestration reservoirs. The rift basins are of particular interest as storage reservoirs for CO2 in light of recent work showing the efficacy of mineralizing injected carbon in basaltic formations. The use of these data presents unique challenges, particularly due to their vintage. However, new data processing capabilities and seismic prestack waveform inversion techniques elevate the potential of the legacy data. Using state of the art processing techniques we identify previously un-imaged rift basins off the US east coast between Delaware and Massachusetts and update mapping related to the areal and volumetric extent of basaltic fill. Applying prestack waveform inversion to the reprocessed seismic data, we show that each rift basin has different basaltic properties and thereby distinct utilities as carbon storage reservoirs.

  4. Sequestration and Distribution Characteristics of Cd(II) by Microcystis aeruginosa and Its Role in Colony Formation.

    Science.gov (United States)

    Bi, Xiangdong; Yan, Ran; Li, Fenxiang; Dai, Wei; Jiao, Kewei; Zhou, Qixing; Liu, Qi

    2016-01-01

    To investigate the sequestration and distribution characteristics of Cd(II) by Microcystis aeruginosa and its role in Microcystis colony formation, M. aeruginosa was exposed to six different Cd(II) concentrations for 10 days. Cd(II) exposure caused hormesis in the growth of M. aeruginosa . Low concentrations of Cd(II) significantly induced formation of small Microcystis colonies ( P bEPS) contents of M. aeruginosa significantly ( P 93% of Cd(II) was sequestrated in the groups with lower added concentrations of Cd(II). More than 80% of the sequestrated Cd(II) was bioadsorbed by bEPS. The Pearson correlation coefficients of exterior and interior factors related to colony formation of M. aeruginosa revealed that Cd(II) could stimulate the production of IPS and bEPS via increasing Cd(II) bioaccumulation and bioadsorption. Increased levels of cross-linking between Cd(II) and bEPS stimulated algal cell aggregation, which eventually promoted the formation of Microcystis colonies.

  5. Treatment of Pulmonary Sequestrations by Means of Endovascular Embolization: Future or Fashion?

    Directory of Open Access Journals (Sweden)

    Jeroen Diks

    2011-01-01

    Full Text Available Bronchopulmonary sequestration is a rare malformation of the lower respiratory tract. Several methods of treatment have been described since the first publication. We present two cases of female adult patients with bronchopulmonary sequestration. In the first patient an unsuccessful attempt to treat the bronchopulmonary sequestration by means of arterial embolization is described. She was subsequently treated by means of surgical resection, which was the primary treatment for the second patient. Although endovascular techniques are becoming promising, in our opinion surgical resection remains the unique treatment for bronchopulmonary sequestration.

  6. Carbon dioxide (CO2) sequestration in deep saline aquifers and formations: Chapter 3

    Science.gov (United States)

    Rosenbauer, Robert J.; Thomas, Burt

    2010-01-01

    Carbon dioxide (CO2) capture and sequestration in geologic media is one among many emerging strategies to reduce atmospheric emissions of anthropogenic CO2. This chapter looks at the potential of deep saline aquifers – based on their capacity and close proximity to large point sources of CO2 – as repositories for the geologic sequestration of CO2. The petrochemical characteristics which impact on the suitability of saline aquifers for CO2 sequestration and the role of coupled geochemical transport models and numerical tools in evaluating site feasibility are also examined. The full-scale commercial CO2 sequestration project at Sleipner is described together with ongoing pilot and demonstration projects.

  7. ANALYSIS OF URBAN FOREST CARBON SEQUESTRATION CAPACITY: A CASE STUDY OF ZENGDU, SUIZHOU

    Directory of Open Access Journals (Sweden)

    X. Yu

    2017-09-01

    Full Text Available Carbon-fixing and oxygen-releasing is an important content of forest ecosystem serving in city. Analysis of forest ecosystem carbon sequestration capacity can provide scientific reference for urban forest management strategies. Taking Zengdu of Suizhou as an example, CITYGREEN model was applied to calculate the carbon sequestration benefits of urban forest ecosystem in this paper. And the carbon sequestration potential of urban forest ecosystem following the returning of farmland to forest land is also evaluated. The results show that forest area, percent tree cover, and the structure of forest land were the major factors reflecting regional carbon sequestration capacity.

  8. Carbon Sequestration and Forest Management at DoD Installations: An Exploratory Study

    National Research Council Canada - National Science Library

    Barker, Jerry

    1995-01-01

    .... The primary purpose of this report is to explore the influence of management practices such as tree harvesting, deforestation, and reforestation on carbon sequestration potential by DOD forests...

  9. Iodine Sequestration Using Delafossites and Layered Hydroxides

    International Nuclear Information System (INIS)

    J.D. Pless; J.B. Chwirka; J.L. Krumhansl

    2006-01-01

    The objective of this document is to report on early success for sequestering 129 I. Sorption coefficients (K d ) for I - and IO 3 - onto delafossites, spinels and layered metal hydroxides were measured in order to compare their applicability for sequestering 129 I. The studies were performed using a dilute fluid composition representative of groundwater indigenous to the Yucca mountain area. Delafossites generally exhibited relatively poor sorption coefficients ( 1.7 mL/g). In contrast, the composition of the layered hydroxides significantly affects their ability to sorb I. Cu/Al and Cu/Cr layered hydroxide samples exhibit K d 's greater than 10 3 mL/g for both I - and IO 3 -

  10. Carbon Capture and Sequestration. Potential Environmental Impacts

    Energy Technology Data Exchange (ETDEWEB)

    Johnston, P.; Santillo, D. [Greenpeace Research Laboratories, University of Exeter, Prince of Wales Road, Exeter, EX4 4PS (United Kingdom)

    2003-02-01

    Over the last few years, understanding of the profound implications of anthropogenically driven climate change has grown. In turn, this has fuelled research into options to mitigate likely impacts. Approaches involving the capture of carbon dioxide and its storage in geological formations, or in marine waters, have generated a raft of proposed solutions. The scale of some of these proposals is such that they will exert impacts of global significance in their own right. Proposals fall into two broad categories: (1) storage of liquid CO2 or products of reacted CO2 into intermediate/deep oceanic waters. and (2) storage of liquid CO2 into sub-seabed or terrestrial geological formations. For the most part, while the technical feasibility of these schemata has been widely explored, the same is not true of their ecological implications. In the case of deep/intermediate oceanic waters, poor baseline understanding of the associated ecosystems is a considerable impediment to any reliable predictive assessment of likely impacts of carbon dioxide storage in these systems. Disruption of marine microbiological processes and degradation of benthic ecosystems, including those with high levels of endemicity, have been identified as potentially serious impacts. Similarly, the physiology, ecology and likely responses of micro-organisms present in targeted geological formations require evaluation prior to any consideration of the use of such formations for storage of CO2. In addition, the impacts of any leakage to surface need also to be considered. Accordingly this paper explores current uncertainties and detailed informational needs related to ocean and geological storage of fossil fuel-derived CO2. Particular emphasis is placed upon the ecological impacts of these proposals in relation to existing and emergent understanding of deep water/soil ecosystems and the indeterminacies attached to this understanding.

  11. CARBON SEQUESTRATION ON SURFACE MINE LANDS

    Energy Technology Data Exchange (ETDEWEB)

    Donald H. Graves; Christopher Barton; Richard Sweigard; Richard Warner

    2005-02-25

    The October-December Quarter was dedicated to analyzing the first two years tree planting activities and evaluation of the results. This included the analyses of the species success at each of the sites and quantifying the data for future year determination of research levels. Additional detailed studies have been planned to further quantify total carbon storage accumulation on the research areas. At least 124 acres of new plantings will be established in 2005 to bring the total to 500 acres or more in the study area across the state of Kentucky. During the first 2 years of activities, 172,000 tree seedlings were planted on 257 acres in eastern Kentucky and 77,520 seedlings were planted on 119 acres in western Kentucky. The quantities of each species was discussed in the first Annual Report. A monitoring program was implemented to measure treatment effects on above and below ground C and nitrogen (N) pools and fluxes. A sampling strategy was devised that will allow for statistical comparisons of the various species within planting conditions and sites. Seedling heights and diameters are measured for initial status and re-measured on an annual basis. Leaves were harvested and leaf area measurements were performed. They were then dried and weighed and analyzed for C and N. Whole trees were removed to determine biomass levels and to evaluate C and N levels in all components of the trees. Clip plots were taken to determine herbaceous production and litter was collected in baskets and gathered each month to quantify C & N levels. Soil samples were collected to determine the chemical and mineralogical characterization of each area. The physical attributes of the soils are also being determined to provide information on the relative level of compaction. Hydrology and water quality monitoring is being conducted on all areas. Weather data is also being recorded that measures precipitation values, temperature, relative humidity wind speed and direction and solar radiation

  12. Southwest Regional Partnership on Carbon Sequestration Phase II

    Energy Technology Data Exchange (ETDEWEB)

    James Rutledge

    2011-02-01

    The Southwest Regional Partnership (SWP) on Carbon Sequestration designed and deployed a medium-scale field pilot test of geologic carbon dioxide (CO2) sequestration in the Aneth oil field. Greater Aneth oil field, Utah's largest oil producer, was discovered in 1956 and has produced over 455 million barrels of oil (72 million m3). Located in the Paradox Basin of southeastern Utah, Greater Aneth is a stratigraphic trap producing from the Pennsylvanian Paradox Formation. Because it represents an archetype oil field of the western U.S., Greater Aneth was selected as one of three geologic pilots to demonstrate combined enhanced oil recovery (EOR) and CO2 sequestration under the auspices of the SWP on Carbon Sequestration, sponsored by the U.S. Department of Energy. The pilot demonstration focuced on the western portion of the Aneth Unit as this area of the field was converted from waterflood production to CO2 EOR starting in late 2007. The Aneth Unit is in the northwestern part of the field and has produced 149 million barrels (24 million m3) of the estimated 450 million barrels (71.5 million m3) of the original oil in place - a 33% recovery rate. The large amount of remaining oil makes the Aneth Unit ideal to demonstrate both CO2 storage capacity and EOR by CO2 flooding. This report summarizes the geologic characterization research, the various field monitoring tests, and the development of a geologic model and numerical simulations conducted for the Aneth demonstration project. The Utah Geological Survey (UGS), with contributions from other Partners, evaluated how the surface and subsurface geology of the Aneth Unit demonstration site will affect sequestration operations and engineering strategies. The UGS-research for the project are summarized in Chapters 1 through 7, and includes (1) mapping the surface geology including stratigraphy, faulting, fractures, and deformation bands, (2) describing the local Jurassic and Cretaceous stratigraphy, (3) mapping the

  13. Carbon Sequestration in Unconventional Reservoirs: Geophysical, Geochemical and Geomechanical Considerations

    Science.gov (United States)

    Zakharova, Natalia V.

    In the face of the environmental challenges presented by the acceleration of global warming, carbon capture and storage, also called carbon sequestration, may provide a vital option to reduce anthropogenic carbon dioxide emissions, while meeting the world's energy demands. To operate on a global scale, carbon sequestration would require thousands of geologic repositories that could accommodate billions of tons of carbon dioxide per year. In order to reach such capacity, various types of geologic reservoirs should be considered, including unconventional reservoirs such as volcanic rocks, fractured formations, and moderate-permeability aquifers. Unconventional reservoirs, however, are characterized by complex pore structure, high heterogeneity, and intricate feedbacks between physical, chemical and mechanical processes, and their capacity to securely store carbon emissions needs to be confirmed. In this dissertation, I present my contribution toward the understanding of geophysical, geochemical, hydraulic, and geomechanical properties of continental basalts and fractured sedimentary formations in the context of their carbon storage capacity. The data come from two characterization projects, in the Columbia River Flood Basalt in Washington and the Newark Rift Basin in New York, funded by the U.S. Department of Energy through Big Sky Carbon Sequestration Partnerships and TriCarb Consortium for Carbon Sequestration. My work focuses on in situ analysis using borehole geophysical measurements that allow for detailed characterization of formation properties on the reservoir scale and under nearly unaltered subsurface conditions. The immobilization of injected CO2 by mineralization in basaltic rocks offers a critical advantage over sedimentary reservoirs for long-term CO2 storage. Continental flood basalts, such as the Columbia River Basalt Group, possess a suitable structure for CO2 storage, with extensive reservoirs in the interflow zones separated by massive impermeable

  14. Effects of forest fertilization on C sequestration and GHG emissions

    Energy Technology Data Exchange (ETDEWEB)

    Prescott, C.E.; Grayston, S.J.; Basiliko, N.; Seely, B.A.; Weetman, G.F. [British Columbia Univ., Vancouver, BC (Canada). Dept. of Forest Sciences; Bull, G.Q.; Northway, S. [British Columbia Univ., Vancouver, BC (Canada). Dept. of Forest Resources Management; Mohn, W.W. [British Columbia Univ., Vancouver, BC (Canada). Dept. of Microbiology and Immunology

    2005-07-01

    This study evaluated the potential to create carbon credits from the increased storage in all carbon pools on the forest landscape. It was conducted in response to the Kyoto Protocol provision which allows the inclusion of carbon sinks. The productivity of Canada's forest landbase is limited by availability of nutrients, particularly nitrogen (N). Studies have shown that forest fertilization not only increases productivity of many forest type, but offers the associated benefit of increased carbon (C) sequestration in biomass. There is increasing evidence that N fertilization will also increase C sequestration in soil organic matter, since higher N availability appears to interfere with litter decomposition causing more C to become humified. Many long-term fertilization experiments in British Columbia have provided an opportunity to quantify the effects of N addition on C sequestration in vegetation and soil organic matter. It was noted that determining the effects of fertilization on emission of nitrous oxides (N{sub 2}O) and consumption of methane (CH{sub 4}) is critical since the greenhouse warming potential of these gases is much greater than that of carbon dioxide (CO{sub 2}). This study also used state-of-the-art molecular methods to identify the soil microorganisms responsible for N{sub 2}O production and CH{sub 4} oxidation in order to determine the complex and often contradictory effects of fertilizers on N{sub 2}O emission and CH{sub 4} oxidation in forest soils. The actual N{sub 2}O, CO{sub 2}, and CH{sub 4} fluxes from these soils were also measured. The main objective of the project was the development of microbial indicators as tools to detect soil GHG emission activity.

  15. Effects of forest fertilization on C sequestration and GHG emissions

    International Nuclear Information System (INIS)

    Prescott, C.E.; Grayston, S.J.; Basiliko, N.; Seely, B.A.; Weetman, G.F.; Bull, G.Q.; Northway, S.; Mohn, W.W.

    2005-01-01

    This study evaluated the potential to create carbon credits from the increased storage in all carbon pools on the forest landscape. It was conducted in response to the Kyoto Protocol provision which allows the inclusion of carbon sinks. The productivity of Canada's forest landbase is limited by availability of nutrients, particularly nitrogen (N). Studies have shown that forest fertilization not only increases productivity of many forest type, but offers the associated benefit of increased carbon (C) sequestration in biomass. There is increasing evidence that N fertilization will also increase C sequestration in soil organic matter, since higher N availability appears to interfere with litter decomposition causing more C to become humified. Many long-term fertilization experiments in British Columbia have provided an opportunity to quantify the effects of N addition on C sequestration in vegetation and soil organic matter. It was noted that determining the effects of fertilization on emission of nitrous oxides (N 2 O) and consumption of methane (CH 4 ) is critical since the greenhouse warming potential of these gases is much greater than that of carbon dioxide (CO 2 ). This study also used state-of-the-art molecular methods to identify the soil microorganisms responsible for N 2 O production and CH 4 oxidation in order to determine the complex and often contradictory effects of fertilizers on N 2 O emission and CH 4 oxidation in forest soils. The actual N 2 O, CO 2 , and CH 4 fluxes from these soils were also measured. The main objective of the project was the development of microbial indicators as tools to detect soil GHG emission activity

  16. Reaction mechanisms for enhancing carbon dioxide mineral sequestration

    Science.gov (United States)

    Jarvis, Karalee Ann

    Increasing global temperature resulting from the increased release of carbon dioxide into the atmosphere is one of the greatest problems facing society. Nevertheless, coal plants remain the largest source of electrical energy and carbon dioxide gas. For this reason, researchers are searching for methods to reduce carbon dioxide emissions into the atmosphere from the combustion of coal. Mineral sequestration of carbon dioxide reacted in electrolyte solutions at 185°C and 2200 psi with olivine (magnesium silicate) has been shown to produce environmentally benign carbonates. However, to make this method feasible for industrial applications, the reaction rate needs to be increased. Two methods were employed to increase the rate of mineral sequestration: reactant composition and concentration were altered independently in various runs. The products were analyzed with complete combustion for total carbon content. Crystalline phases in the product were analyzed with Debye-Scherrer X-ray powder diffraction. To understand the reaction mechanism, single crystals of San Carlos Olivine were reacted in two solutions: (0.64 M NaHCO3/1 M NaCl) and (5.5 M KHCO3) and analyzed with scanning electron microscopy (SEM), transmission electron microscopy (TEM), electron energy loss spectroscopy (EELS), and fluctuation electron microscopy (FEM) to study the surface morphology, atomic crystalline structure, composition and amorphous structure. From solution chemistry studies, it was found that increasing the activity of the bicarbonate ion increased the conversion rate of carbon dioxide to magnesite. The fastest conversion, 60% conversion in one hour, occurred in a solution of 5.5 M KHCO3. The reaction product particles, magnesium carbonate, significantly increased in both number density and size on the coupon when the bicarbonate ion activity was increased. During some experiments reaction vessel corrosion also altered the mineral sequestration mechanism. Nickel ions from vessel

  17. On leakage and seepage from geological carbon sequestration sites

    Energy Technology Data Exchange (ETDEWEB)

    Oldenburg, C.M.; Unger, A.J.A.; Hepple, R.P.; Jordan, P.D.

    2002-07-18

    Geologic carbon sequestration is one strategy for reducing the rate of increase of global atmospheric carbon dioxide (CO{sub 2} ) concentrations (IEA, 1997; Reichle, 2000). As used here, the term geologic carbon sequestration refers to the direct injection of supercritical CO{sub 2} deep into subsurface target formations. These target formations will typically be either depleted oil and gas reservoirs, or brine-filled permeable formations referred to here as brine formations. Injected CO{sub 2} will tend to be trapped by one or more of the following mechanisms: (1) permeability trapping, for example when buoyant supercritical CO{sub 2} rises until trapped by a confining caprock; (2) solubility trapping, for example when CO{sub 2} dissolves into the aqueous phase in water-saturated formations, or (3) mineralogic trapping, such as occurs when CO{sub 2} reacts to produce stable carbonate minerals. When CO{sub 2} is trapped in the subsurface by any of these mechanisms, it is effectively sequestered away from the atmosphere where it would otherwise act as a greenhouse gas. The purpose of this report is to summarize our work aimed at quantifying potential CO{sub 2} seepage due to leakage from geologic carbon sequestration sites. The approach we take is to present first the relevant properties of CO{sub 2} over the range of conditions from the deep subsurface to the vadose zone (Section 2), and then discuss conceptual models for how leakage might occur (Section 3). The discussion includes consideration of gas reservoir and natural gas storage analogs, along with some simple estimates of seepage based on assumed leakage rates. The conceptual model discussion provides the background for the modeling approach wherein we focus on simulating transport in the vadose zone, the last potential barrier to CO{sub 2} seepage (Section 4). Because of the potentially wide range of possible properties of actual future geologic sequestration sites, we carry out sensitivity analyses by

  18. Going With the Flow: An Aid in Detecting and Differentiating Bronchopulmonary Sequestrations and Hybrid Lesions.

    Science.gov (United States)

    Oliver, Edward R; DeBari, Suzanne E; Giannone, Mariann M; Pogoriler, Jennifer E; Johnson, Ann M; Horii, Steven C; Gebb, Juliana S; Howell, Lori J; Adzick, N Scott; Coleman, Beverly G

    2018-02-01

    To assess the ability of prenatal ultrasound (US) in identifying systemic feeding arteries in bronchopulmonary sequestrations and hybrid lesions and report the ability of US in classifying bronchopulmonary sequestrations as intralobar or extralobar. Institutional Review Board-approved radiology and clinical database searches from 2008 to 2015 were performed for prenatal lung lesions with final diagnoses of bronchopulmonary sequestrations or hybrid lesions. All patients had detailed US examinations, and most patients had ultrafast magnetic resonance imaging (MRI). Lesion location, size, and identification of systemic feeding arteries and draining veins were assessed with US. The study consisted of 102 bronchopulmonary sequestrations and 86 hybrid lesions. The median maternal age was 30 years. The median gestational age was 22 weeks 5 days. Of bronchopulmonary sequestrations, 66 had surgical pathologic confirmation, and 100 had postnatal imaging. Bronchopulmonary sequestration locations were intrathoracic (n = 77), intra-abdominal (n = 19), and transdiaphragmatic (n = 6). Of hybrid lesions, 84 had surgical pathologic confirmation, and 83 had postnatal imaging. Hybrid lesion locations were intrathoracic (n = 84) and transdiaphragmatic (n = 2). Ultrasound correctly identified systemic feeding arteries in 86 of 102 bronchopulmonary sequestrations and 79 of 86 hybrid lesions. Of patients who underwent MRI, systemic feeding arteries were reported in 62 of 92 bronchopulmonary sequestrations and 56 of 81 hybrid lesions. Ultrasound identified more systemic feeding arteries than MRI in both bronchopulmonary sequestrations and hybrid lesions (P < .01). Magnetic resonance imaging identified systemic feeding arteries that US did not in only 2 cases. In cases in which both systemic feeding arteries and draining veins were identified, US could correctly predict intrathoracic lesions as intralobar or extralobar in 44 of 49 bronchopulmonary sequestrations and

  19. Regulation and functions of the lms homeobox gene during development of embryonic lateral transverse muscles and direct flight muscles in Drosophila.

    Directory of Open Access Journals (Sweden)

    Dominik Müller

    Full Text Available BACKGROUND: Patterning and differentiation of developing musculatures require elaborate networks of transcriptional regulation. In Drosophila, significant progress has been made into identifying the regulators of muscle development and defining their interactive networks. One major family of transcription factors involved in these processes consists of homeodomain proteins. In flies, several members of this family serve as muscle identity genes to specify the fates of individual muscles, or groups thereof, during embryonic and/or adult muscle development. Herein, we report on the expression and function of a new Drosophila homeobox gene during both embryonic and adult muscle development. METHODOLOGY/PRINCIPAL FINDINGS: The newly described homeobox gene, termed lateral muscles scarcer (lms, which has yet uncharacterized orthologs in other invertebrates and primitive chordates but not in vertebrates, is expressed exclusively in subsets of developing muscle tissues. In embryos, lms is expressed specifically in the four lateral transverse (LT muscles and their founder cells in each hemisegment, whereas in larval wing imaginal discs, it is expressed in myoblasts that develop into direct flight muscles (DFMs, which are important for proper wing positioning. We have analyzed the regulatory inputs of various other muscle identity genes with overlapping or complementary expression patterns towards the cell type specific regulation of lms expression. Further we demonstrate that lms null mutants exhibit reduced numbers of embryonic LT muscles, and null mutant adults feature held-out-wing phenotypes. We provide a detailed description of the pattern and morphology of the direct flight muscles in the wild type and lms mutant flies by using the recently-developed ultramicroscopy and show that, in the mutants, all DFMs are present and present normal morphologies. CONCLUSIONS/SIGNIFICANCE: We have identified the homeobox gene lms as a new muscle identity gene

  20. Characterization of Rice Homeobox Genes, OsHOX22 and OsHOX24, and Over-expression of OsHOX24 in Transgenic Arabidopsis Suggest their Role in Abiotic Stress Response

    Directory of Open Access Journals (Sweden)

    Annapurna eBhattacharjee

    2016-05-01

    Full Text Available Homeobox transcription factors are well known regulators of plant growth and development. In this study, we carried out functional analysis of two candidate stress-responsive HD-ZIP I class homeobox genes from rice, OsHOX22 and OsHOX24. These genes were highly upregulated under various abiotic stress conditions at different stages of rice development, including seedling, mature and reproductive stages. The transcript levels of these genes were enhanced significantly in the presence of plant hormones, including abscisic acid (ABA, auxin, salicylic acid and gibberellic acid. The recombinant full-length and truncated homeobox proteins were found to be localized in the nucleus. Electrophoretic mobility shift assay established the binding of these homeobox proteins with specific DNA sequences, AH1 (CAAT(A/TATTG and AH2 (CAAT(C/GATTG. Transactivation assays in yeast revealed the transcriptional activation potential of full-length OsHOX22 and OsHOX24 proteins. Homo- and hetero-dimerization capabilities of these proteins have also been demonstrated. Further, we identified putative novel interacting proteins of OsHOX22 and OsHOX24 via yeast-two hybrid analysis. Over-expression of OsHOX24 imparted higher sensitivity to stress hormone, ABA, and abiotic stresses in the transgenic Arabidopsis plants as revealed by various physiological and phenotypic assays. Microarray analysis revealed differential expression of several stress-responsive genes in transgenic lines as compared to wild-type. Many of these genes were found to be involved in transcriptional regulation and various metabolic pathways. Altogether, our results suggest the possible role of OsHOX22/OsHOX24 homeobox proteins as negative regulators in abiotic stress responses.

  1. Agricultural land abandonment in Mediterranean environment provides ecosystem services via soil carbon sequestration.

    Science.gov (United States)

    Novara, Agata; Gristina, Luciano; Sala, Giovanna; Galati, Antonino; Crescimanno, Maria; Cerdà, Artemi; Badalamenti, Emilio; La Mantia, Tommaso

    2017-01-15

    Abandonment of agricultural land leads to several consequences for ecosystem functions. Agricultural abandonment may be a significant and low cost strategy for carbon sequestration and mitigation of anthropogenic CO 2 emissions due to the vegetation recovery and increase in soil organic matter. The aim of this study was to: (i) estimate the influence of different Soil Regions (areas characterized by a typical climate and parent material association) and Bioclimates (zones with homogeneous climatic regions and thermotype indices) on soil organic carbon (SOC) dynamics after agricultural land abandonment; and (ii) to analyse the efficiency of the agri-environment policy (agri-environment measures) suggested by the European Commission in relation to potential SOC stock ability in the Sicilian Region (Italy). In order to quantify the effects of agricultural abandonment on SOC, a dataset with original data that was sampled in Sicily and existing data from the literature were analysed according to the IPCC (Intergovernmental Panel on Climate Change) methodology. Results showed that abandonment of cropland soils increased SOC stock by 9.03MgCha -1 on average, ranging from 5.4MgCha -1 to 26.7MgCha -1 in relation to the Soil Region and Bioclimate. The estimation of SOC change after agricultural use permitted calculation of the payments for ecosystem service (PES) of C sequestration after agricultural land abandonment in relation to environmental benefits, increasing in this way the efficiency of PES. Considering the 14,337ha of abandoned lands in Sicily, the CO 2 emission as a whole was reduced by 887,745Mg CO 2 . Therefore, it could be concluded that abandoned agricultural fields represents a valid opportunity to mitigate agriculture sector emissions in Sicily. Copyright © 2016 Elsevier B.V. All rights reserved.

  2. The impact of afforestation on soil organic carbon sequestration on the Qinghai Plateau, China.

    Directory of Open Access Journals (Sweden)

    Sheng-wei Shi

    Full Text Available Afforestation, the conversion of non-forested land into forest, is widespread in China. However, the dynamics of soil organic carbon (SOC after afforestation are not well understood, especially in plateau climate zones. For a total of 48 shrub- and/or tree-dominated afforestation sites on the Qinghai Plateau, Northwestern China, post-afforestation changes in SOC, total nitrogen (TN, the carbon-to-nitrogen ratio (C/N and soil bulk density (BD were investigated to a soil depth of 60 cm using the paired-plots method. SOC and TN accumulated at rates of 138.2 g C m(-2 yr(-1 and 4.6 g N m(-2 yr(-1, respectively, in shrub-dominated afforestation sites and at rates of 113.3 g C m(-2 yr(-1 and 6.7 g N m(-2 yr(-1, respectively, in tree-dominated afforestation sites. Soil BD was slightly reduced in all layers in the shrub-dominated afforestation plots, and significantly reduced in soil layers from 0-40cm in the tree-dominated afforestation plots. The C/N ratio was higher in afforested sites relative to the reference sites. SOC accumulation was closely related to TN accumulation following afforestation, and the inclusion of N-fixing species in tree-dominated afforestation sites additionally increased the soil accumulation capacity for SOC (p < 0.05. Multiple regression models including the age of an afforestation plot and total number of plant species explained 75% of the variation in relative SOC content change at depth of 0-20 cm, in tree-dominated afforestation sites. We conclude that afforestation on the Qinghai Plateau is associated with great capability of SOC and TN sequestration. This study improves our understanding of the mechanisms underlying SOC and TN accumulation in a plateau climate, and provides evidence on the C sequestration potentials associated with forestry projects in China.

  3. Simultaneous sequestration of uranyl and arsenate at the goethite/water interface

    International Nuclear Information System (INIS)

    Fang Yuan; Yawen Cai; Shitong Yang; Zhiyong Liu; Lanhua Chen; Yue Lang; Shuao Wang; Xiangke Wang; Collaborative Innovation Center of Radiation Medicine of Jiangsu Higher Education Institutions, Suzhou; North China Electric Power University, Beijing

    2017-01-01

    This study highlights the simultaneous sequestration of U(VI) and arsenate at the goethite/water interface. The uptake trends and speciation of these two components were related with molar arsenate/U(VI) ratio, solution pH, contact order and aging time. A metastable [UO_2(H_2AsO_4)_2·H_2O] was observed after 3 days and then this solid completely transformed into Na_2(UO_2AsO_4)_2·3H_2O after 7 days. The disodium ethylenediamine tetraacetate ligand gave rise to the complete dissolution of Na_2(UO_2AsO_4)_2·3H_2O phase and the release of U(VI) and arsenate back into the solution. The experimental findings facilitated us better comprehend the migration and fate of coexisting U(VI) and arsenate in the aquatic environment. (author)

  4. CARBON SEQUESTRATION AND PLANT COMMUNITY DYNAMICS FOLLOWING REFORESTATION OF TROPICAL PASTURE.

    Science.gov (United States)

    WHENDEE L. SILVER; LARA M. KUEPPERS; ARIEL E. LUGO; REBECCA OSTERTAG; VIRGINIA MATZEK

    2004-01-01

    Conversion of abandoned cattle pastures to secondary forests and plantations in the tropics has been proposed as a means to increase rates of carbon (C) sequestration from the atmosphere and enhance local biodiversity. We used a long-term tropical reforestation project (55–61 yr) to estimate rates of above- and belowground C sequestration and to investigate the impact...

  5. Carbon sequestration in the U.S. forest sector from 1990 to 2010

    Science.gov (United States)

    Peter B. Woodbury; James E. Smith; Linda S. Heath

    2007-01-01

    Forest inventory data supplemented with data from intensive research sites and models were used to estimate carbon stocks and sequestration rates in U.S. forests, including effects of land use change. Data on the production of wood products and emission from decomposition were used to estimate carbon stocks and sequestration rates in wood products and landfills. From...

  6. Assessing net carbon sequestration on urban and community forests of northern New England, USA

    Science.gov (United States)

    Daolan Zheng; Mark J. Ducey; Linda S. Heath

    2013-01-01

    Urban and community forests play an important role in the overall carbon budget of the USA. Accurately quantifying carbon sequestration by these forests can provide insight for strategic planning to mitigate greenhouse gas effects on climate change. This study provides a new methodology to estimate net forest carbon sequestration (FCS) in urban and community lands of...

  7. Using silviculture to influence carbon sequestration in southern Appalachian spruce-fir forests

    Science.gov (United States)

    Patrick T. Moore; R. Justin DeRose; James N. Long; Helga. van Miegroet

    2012-01-01

    Enhancement of forest growth through silvicultural modification of stand density is one strategy for increasing carbon (C) sequestration. Using the Fire and Fuels Extension of the Forest Vegetation Simulator, the effects of even-aged, uneven-aged and no-action management scenarios on C sequestration in a southern Appalachian red spruce-Fraser fir forest were modeled....

  8. Soil carbon sequestration potential in semi-arid grasslands in the conservation reserve program

    Science.gov (United States)

    The Conservation Reserve Program (CRP) in the USA plays a major role in carbon (C) sequestration to help mitigate rising CO2 levels and climate change. The Southern High Plains (SHP) region contains N900.000 ha enrolled in CRP, but a regionally specific C sequestration rate has not been studied, and...

  9. The biodiversity cost of carbon sequestration in tropical savanna.

    Science.gov (United States)

    Abreu, Rodolfo C R; Hoffmann, William A; Vasconcelos, Heraldo L; Pilon, Natashi A; Rossatto, Davi R; Durigan, Giselda

    2017-08-01

    Tropical savannas have been increasingly viewed as an opportunity for carbon sequestration through fire suppression and afforestation, but insufficient attention has been given to the consequences for biodiversity. To evaluate the biodiversity costs of increasing carbon sequestration, we quantified changes in ecosystem carbon stocks and the associated changes in communities of plants and ants resulting from fire suppression in savannas of the Brazilian Cerrado, a global biodiversity hotspot. Fire suppression resulted in increased carbon stocks of 1.2 Mg ha -1 year -1 since 1986 but was associated with acute species loss. In sites fully encroached by forest, plant species richness declined by 27%, and ant richness declined by 35%. Richness of savanna specialists, the species most at risk of local extinction due to forest encroachment, declined by 67% for plants and 86% for ants. This loss highlights the important role of fire in maintaining biodiversity in tropical savannas, a role that is not reflected in current policies of fire suppression throughout the Brazilian Cerrado. In tropical grasslands and savannas throughout the tropics, carbon mitigation programs that promote forest cover cannot be assumed to provide net benefits for conservation.

  10. Offsetting China's CO2 Emissions by Soil Carbon Sequestration

    International Nuclear Information System (INIS)

    Lal, R.

    2004-01-01

    Fossil fuel emissions of carbon (C) in China in 2000 was about 1 Pg/yr, which may surpass that of the U.S. (1.84 Pg C) by 2020. Terrestrial C pool of China comprises about 35 to 60 Pg in the forest and 120 to 186 Pg in soils. Soil degradation is a major issue affecting 145 Mha by different degradative processes, of which 126 Mha are prone to accelerated soil erosion. Similar to world soils, agricultural soils of China have also lost 30 to 50% or more of the antecedent soil organic carbon (SOC) pool. Some of the depleted SOC pool can be re-sequestered through restoration of degraded soils, and adoption of recommended management practices. The latter include conversion of upland crops to multiple cropping and rice paddies, adoption of integrated nutrient management (INM) strategies, incorporation of cover crops in the rotations cycle and adoption of conservation-effective systems including conservation tillage. A crude estimated potential of soil C sequestration in China is 119 to 226 Tg C/y of SOC and 7 to 138 Tg C/y for soil inorganic carbon (SIC) up to 50 years. The total potential of soil C sequestration is about 12 Pg, and this potential can offset about 25% of the annual fossil fuel emissions in China

  11. Phylogenetic variation of phytolith carbon sequestration in bamboos.

    Science.gov (United States)

    Li, Beilei; Song, Zhaoliang; Li, Zimin; Wang, Hailong; Gui, Renyi; Song, Ruisheng

    2014-04-16

    Phytoliths, the amorphous silica deposited in plant tissues, can occlude organic carbon (phytolith-occluded carbon, PhytOC) during their formation and play a significant role in the global carbon balance. This study explored phylogenetic variation of phytolith carbon sequestration in bamboos. The phytolith content in bamboo varied substantially from 4.28% to 16.42%, with the highest content in Sasa and the lowest in Chimonobambusa, Indocalamus and Acidosasa. The mean PhytOC production flux and rate in China's bamboo forests were 62.83 kg CO2 ha(-1) y(-1) and 4.5 × 10(8)kg CO2 y(-1), respectively. This implies that 1.4 × 10(9) kg CO2 would be sequestered in world's bamboo phytoliths because the global bamboo distribution area is about three to four times higher than China's bamboo. Therefore, both increasing the bamboo area and selecting high phytolith-content bamboo species would increase the sequestration of atmospheric CO2 within bamboo phytoliths.

  12. Lithological control on phytolith carbon sequestration in moso bamboo forests.

    Science.gov (United States)

    Li, Beilei; Song, Zhaoliang; Wang, Hailong; Li, Zimin; Jiang, Peikun; Zhou, Guomo

    2014-06-11

    Phytolith-occluded carbon (PhytOC) is a stable carbon (C) fraction that has effects on long-term global C balance. Here, we report the phytolith and PhytOC accumulation in moso bamboo leaves developed on four types of parent materials. The results show that PhytOC content of moso bamboo varies with parent material in the order of granodiorite (2.0 g kg(-1)) > granite (1.6 g kg(-1)) > basalt (1.3 g kg(-1)) > shale (0.7 g kg(-1)). PhytOC production flux of moso bamboo on four types of parent materials varies significantly from 1.0 to 64.8 kg CO₂ ha(-1) yr(-1), thus a net 4.7 × 10(6) -310.8 × 10(6) kg CO₂ yr(-1) would be sequestered by moso bamboo phytoliths in China. The phytolith C sequestration rate in moso bamboo of China will continue to increase in the following decades due to nationwide bamboo afforestation/reforestation, demonstrating the potential of bamboo in regulating terrestrial C balance. Management practices such as afforestation of bamboo in granodiorite area and granodiorite powder amendment may further enhance phytolith C sequestration through bamboo plants.

  13. Sequestration of carbon dioxide and production of biomolecules using cyanobacteria.

    Science.gov (United States)

    Upendar, Ganta; Singh, Sunita; Chakrabarty, Jitamanyu; Chandra Ghanta, Kartik; Dutta, Susmita; Dutta, Abhishek

    2018-07-15

    A cyanobacterial strain, Synechococcus sp. NIT18, has been applied to sequester CO 2 using sodium carbonate as inorganic carbon source due to its efficiency of CO 2 bioconversion and high biomass production. The biomass obtained is used for the extraction of biomolecules - protein, carbohydrate and lipid. The main objective of the study is to maximize the biomass and biomolecules production with CO 2 sequestration using cyanobacterial strain cultivated under different concentrations of CO 2 (5-20%), pH (7-11) and inoculum size (5-12.5%) within a statistical framework. Maximum sequestration of CO 2 and maximum productivities of protein, carbohydrate and lipid are 71.02%, 4.9 mg/L/day, 6.7 mg/L/day and 1.6 mg/L/day respectively, at initial CO 2 concentration: 10%, pH: 9 and inoculum size: 12.5%. Since flue gas contains 10-15% CO 2 and the present strain is able to sequester CO 2 in this range, the strain could be considered as a useful tool for CO 2 mitigation for greener world. Copyright © 2018 Elsevier Ltd. All rights reserved.

  14. Differential expression of homeobox-containing genes Msx-1 and Msx-2 and homeoprotein Msx-2 expression during chick craniofacial development.

    Science.gov (United States)

    Nishikawa, K; Nakanishi, T; Aoki, C; Hattori, T; Takahashi, K; Taniguchi, S

    1994-03-01

    The expression pattern of chick Msx-1 and Msx-2 homeobox genes in craniofacial primordia was examined by in situ hybridization using cRNA probes. Both genes were expressed in the distal region of the facial primordia, where the distribution of Msx-2 expression was restricted distally within the Msx-1 expression domain. On the contrary, Msx-2 expression in the lateral choroid plexus and cranial skull was broader and more intensive than Msx-1 expression. Our findings suggest that these two genes cooperate to play differential roles in craniofacial development. Msx-2 protein was detected immunohistochemically, and its localization essentially corresponded to the mRNA expression pattern, substantiating the involvement of Msx-2 protein as a transcriptional regulator in developing limb and face.

  15. The impact of afforestation on soil organic carbon sequestration on the Qinghai Plateau, China.

    Science.gov (United States)

    Shi, Sheng-wei; Han, Peng-fei; Zhang, Ping; Ding, Fan; Ma, Cheng-lin

    2015-01-01

    Afforestation, the conversion of non-forested land into forest, is widespread in China. However, the dynamics of soil organic carbon (SOC) after afforestation are not well understood, especially in plateau climate zones. For a total of 48 shrub- and/or tree-dominated afforestation sites on the Qinghai Plateau, Northwestern China, post-afforestation changes in SOC, total nitrogen (TN), the carbon-to-nitrogen ratio (C/N) and soil bulk density (BD) were investigated to a soil depth of 60 cm using the paired-plots method. SOC and TN accumulated at rates of 138.2 g C m(-2) yr(-1) and 4.6 g N m(-2) yr(-1), respectively, in shrub-dominated afforestation sites and at rates of 113.3 g C m(-2) yr(-1) and 6.7 g N m(-2) yr(-1), respectively, in tree-dominated afforestation sites. Soil BD was slightly reduced in all layers in the shrub-dominated afforestation plots, and significantly reduced in soil layers from 0-40cm in the tree-dominated afforestation plots. The C/N ratio was higher in afforested sites relative to the reference sites. SOC accumulation was closely related to TN accumulation following afforestation, and the inclusion of N-fixing species in tree-dominated afforestation sites additionally increased the soil accumulation capacity for SOC (p sequestration. This study improves our understanding of the mechanisms underlying SOC and TN accumulation in a plateau climate, and provides evidence on the C sequestration potentials associated with forestry projects in China.

  16. Initial characterization of mudstone nanoporosity with small angle neutron scattering using caprocks from carbon sequestration sites

    International Nuclear Information System (INIS)

    McCray, John; Navarre-Sitchler, Alexis; Mouzakis, Katherine; Heath, Jason E.; Dewers, Thomas A.; Rother, Gernot

    2010-01-01

    Geological carbon sequestration relies on the principle that CO 2 injected deep into the subsurface is unable to leak to the atmosphere. Structural trapping by a relatively impermeable caprock (often mudstone such as a shale) is the main trapping mechanism that is currently relied on for the first hundreds of years. Many of the pores of the caprock are of micrometer to nanometer scale. However, the distribution, geometry and volume of porosity at these scales are poorly characterized. Differences in pore shape and size can cause variation in capillary properties and fluid transport resulting in fluid pathways with different capillary entry pressures in the same sample. Prediction of pore network properties for distinct geologic environments would result in significant advancement in our ability to model subsurface fluid flow. Specifically, prediction of fluid flow through caprocks of geologic CO 2 sequestration reservoirs is a critical step in evaluating the risk of leakage to overlying aquifers. The micro- and nanoporosity was analyzed in four mudstones using small angle neutron scattering (SANS). These mudstones are caprocks of formations that are currently under study or being used for carbon sequestration projects and include the Marine Tuscaloosa Group, the Lower Tuscaloosa Group, the upper and lower shale members of the Kirtland Formation, and the Pennsylvanian Gothic shale. Total organic carbon varies from <0.3% to 4% by weight. Expandable clay contents range from 10% to ∼40% in the Gothic shale and Kirtland Formation, respectively. Neutrons effectively scatter from interfaces between materials with differing scattering length density (i.e. minerals and pores). The intensity of scattered neutrons, I(Q), where Q is the scattering vector, gives information about the volume of pores and their arrangement in the sample. The slope of the scattering data when plotted as log I(Q) vs. log Q provides information about the fractality or geometry of the pore network

  17. Initial characterization of mudstone nanoporosity with small angle neutron scattering using caprocks from carbon sequestration sites.

    Energy Technology Data Exchange (ETDEWEB)

    McCray, John (Colorado School of Mines); Navarre-Sitchler, Alexis (Colorado School of Mines); Mouzakis, Katherine (Colorado School of Mines); Heath, Jason E.; Dewers, Thomas A.; Rother, Gernot (Oak Ridge National Laboratory)

    2010-11-01

    Geological carbon sequestration relies on the principle that CO{sub 2} injected deep into the subsurface is unable to leak to the atmosphere. Structural trapping by a relatively impermeable caprock (often mudstone such as a shale) is the main trapping mechanism that is currently relied on for the first hundreds of years. Many of the pores of the caprock are of micrometer to nanometer scale. However, the distribution, geometry and volume of porosity at these scales are poorly characterized. Differences in pore shape and size can cause variation in capillary properties and fluid transport resulting in fluid pathways with different capillary entry pressures in the same sample. Prediction of pore network properties for distinct geologic environments would result in significant advancement in our ability to model subsurface fluid flow. Specifically, prediction of fluid flow through caprocks of geologic CO{sub 2} sequestration reservoirs is a critical step in evaluating the risk of leakage to overlying aquifers. The micro- and nanoporosity was analyzed in four mudstones using small angle neutron scattering (SANS). These mudstones are caprocks of formations that are currently under study or being used for carbon sequestration projects and include the Marine Tuscaloosa Group, the Lower Tuscaloosa Group, the upper and lower shale members of the Kirtland Formation, and the Pennsylvanian Gothic shale. Total organic carbon varies from <0.3% to 4% by weight. Expandable clay contents range from 10% to {approx}40% in the Gothic shale and Kirtland Formation, respectively. Neutrons effectively scatter from interfaces between materials with differing scattering length density (i.e. minerals and pores). The intensity of scattered neutrons, I(Q), where Q is the scattering vector, gives information about the volume of pores and their arrangement in the sample. The slope of the scattering data when plotted as log I(Q) vs. log Q provides information about the fractality or geometry of

  18. A National Disturbance Modeling System to Support Ecological Carbon Sequestration Assessments

    Science.gov (United States)

    Hawbaker, T. J.; Rollins, M. G.; Volegmann, J. E.; Shi, H.; Sohl, T. L.

    2009-12-01

    The U.S. Geological Survey (USGS) is prototyping a methodology to fulfill requirements of Section 712 of the Energy Independence and Security Act (EISA) of 2007. At the core of the EISA requirements is the development of a methodology to complete a two-year assessment of current carbon stocks and other greenhouse gas (GHG) fluxes, and potential increases for ecological carbon sequestration under a range of future climate changes, land-use / land-cover configurations, and policy, economic and management scenarios. Disturbances, especially fire, affect vegetation dynamics and ecosystem processes, and can also introduce substantial uncertainty and risk to the efficacy of long-term carbon sequestration strategies. Thus, the potential impacts of disturbances need to be considered under different scenarios. As part of USGS efforts to meet EISA requirements, we developed the National Disturbance Modeling System (NDMS) using a series of statistical and process-based simulation models. NDMS produces spatially-explicit forecasts of future disturbance locations and severity, and the resulting effects on vegetation dynamics. NDMS is embedded within the Forecasting Scenarios of Future Land Cover (FORE-SCE) model and informs the General Ensemble Biogeochemical Modeling System (GEMS) for quantifying carbon stocks and GHG fluxes. For fires, NDMS relies on existing disturbance histories, such as the Landsat derived Monitoring Trends in Burn Severity (MTBS) and Vegetation Change Tracker (VCT) data being used to update LANDFIRE fuels data. The MTBS and VCT data are used to parameterize models predicting the number and size of fires in relation to climate, land-use/land-cover change, and socioeconomic variables. The locations of individual fire ignitions are determined by an ignition probability surface and then FARSITE is used to simulate fire spread in response to weather, fuels, and topography. Following the fire spread simulations, a burn severity model is used to determine annual

  19. Refractory organic matter in coastal salt marshes-effect on C sequestration calculations.

    Science.gov (United States)

    Leorri, Eduardo; Zimmerman, Andrew R; Mitra, Siddhartha; Christian, Robert R; Fatela, Francisco; Mallinson, David J

    2018-08-15

    The age and ability of salt marshes to accumulate and sequester carbon is often assessed using the carbon isotopic signatures (Δ 14 C and δ 13 C) of sedimentary organic matter. However, transfers of allochthonous refractory carbon (C RF ) from the watershed to marshes would not represent new C sequestration. To better understand how refractory carbon (C RF ) inputs affect assessments of marsh age and C sequestration, Δ 14 C and δ 13 C of both total organic carbon (TOC), C RF , and non-C RF organic matter fractions were measured in salt marshes from four contrasting systems on the North Atlantic coast. To our knowledge, no salt marsh sediment study has considered refractory or allochthonous carbon in carbon budget calculations or the impact on chronologies. Stable and radiogenic isotope data suggest that while TOC was dominated by autochthonous plant inputs, C RF was dominated by locally recycled or allochthonous C, the delivery of which was controlled by the size and slope of each watershed. Steep-gradient rivers analyzed delivered Δ 14 C-depleted C RF to their estuarine marshes, while the site located in the low-gradient river was associated with larger C RF content. Finally, the marsh isolated from riverine input contained the least fraction of TOC as C RF . Laterally transported C RF caused only a small offset in Δ 14 C in relation to TOC in low-gradient systems (average Δ 14 C offset was -44.4 and -24.2‰ at each location). However, the presence of allochthonous Δ 14 C-depleted C RF in sediments of steep-gradient rivers led to large overestimates of the time of organic matter deposition (i.e. apparent age was older than the 'true' time of deposition) (Δ 14 C offset ranged from -170.6 to -528.9‰). Further, reliance on TOC or loss on ignition analyses to calculate C sequestration by marshes might produce overestimates of at least as much as 10 to 20% since neither account for the lateral transport of allochthonous carbon. Copyright © 2018 Elsevier B

  20. Tailings and mineral carbonation : the potential for atmospheric CO{sub 2} sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Rollo, H.A. [Lorax Environmental Services Ltd., Vancouver, BC (Canada); Jamieson, H.E. [Queen' s Univ., Kingston, ON (Canada). Dept. of Geological Sciences and Geological Engineering; Lee, C.A. [Dillon Consulting Ltd., Cambridge, ON (Canada)

    2009-02-15

    Carbon dioxide (CO{sub 2}) sequestration includes geological storage, ocean storage, organic storage, and mineral storage (mineral carbonation). This presentation discussed tailings and mineral carbonation and the potential for atmospheric CO{sub 2} sequestration. In particular, it outlined CO{sub 2} sequestration and presented a history of investigations. The Ekati Diamond Mine was discussed with particular reference to its location, geology, and processing. Other topics that were presented included mineralogy; water chemistry; modeling results; and estimates of annual CO{sub 2} sequestration. Conclusions and implications were also presented. It was concluded that ore processing at mines with ultramafic host rocks have the potential to partially offset CO{sub 2} emissions. In addition, it was found that existing tailings at ultramafic deposits may be viable source materials for CO{sub 2} sequestration by mineral carbonation. tabs., figs.

  1. Intralobar bronchopulmonary sequestration with large aberrant vessel presenting as recurrent pneumonias

    International Nuclear Information System (INIS)

    Noomani, A.Z.; Toori, K.U.

    2014-01-01

    Bronchopulmonary sequestration is a rare congenital malformation of the lower respiratory tract comprising of a nonfunctioning lung tissue mass that lacks normal communication with the tracheobronchial tree. The diagnosis may be easily missed as many of the symptoms of bronchopulmonary sequestration overlap with that of other pulmonary diseases. Bronchopulmonary sequestration can be complicated by recurrent infections, hemorrhage and malignant transformation and, therefore, needs to be timely diagnosed and resected to decrease both morbidity and mortality. A high degree of suspicion in the differential diagnosis helps diagnose the positive cases. The parenchymal abnormalities associated with bronchopulmonary sequestration are best visualized using computed tomography, although their appearance is variable. We report the case of a 14 years old boy with intralobar bronchopulmonary sequestration with the sole manifestation of recurrent pneumonias. (author)

  2. Radiological diagnosis of pulmonary sequestration: review of six cases, including one bilateral

    International Nuclear Information System (INIS)

    Brito Pacheco, E.M. de; Cazerta, N.M.G.; Marins, J.L.C.; Prando, A.

    1989-01-01

    Radiological diagnosis of pulmonary sequestration: review of six cases, including one bilateral. Pulmonary sequestration is an uncommon disorder consisting of aberrant pulmonary tissue that has no normal connection with the bronchial tree or with the pulmonary arteries, but is supplied by a systemic artery which usually arises from the aorta. Six cases of pulmonary sequestration are presented and the radiological manifestation of this rare congenital disorder are discussed. These sequestrations were intralobar/unilateral in four patients, extralobar/unilateral in one and extralobar/bilateral in the other patient. Special attention is given to the extremely uncommon bilateral sequestration. To our knowledge only four cases of this form of disease has been described in the literature. (author) [pt

  3. Regulation, overexpression, and target gene identification of Potato Homeobox 15 (POTH15) – a class-I KNOX gene in potato

    Science.gov (United States)

    Mahajan, Ameya S.; Kondhare, Kirtikumar R.; Rajabhoj, Mohit P.; Kumar, Amit; Ghate, Tejashree; Ravindran, Nevedha; Habib, Farhat; Siddappa, Sundaresha; Banerjee, Anjan K.

    2016-01-01

    Potato Homeobox 15 (POTH15) is a KNOX-I (Knotted1-like homeobox) family gene in potato that is orthologous to Shoot Meristemless (STM) in Arabidopsis. Despite numerous reports on KNOX genes from different species, studies in potato are limited. Here, we describe photoperiodic regulation of POTH15, its overexpression phenotype, and identification of its potential targets in potato (Solanum tuberosum ssp. andigena). qRT-PCR analysis showed a higher abundance of POTH15 mRNA in shoot tips and stolons under tuber-inducing short-day conditions. POTH15 promoter activity was detected in apical and axillary meristems, stolon tips, tuber eyes, and meristems of tuber sprouts, indicating its role in meristem maintenance and leaf development. POTH15 overexpression altered multiple morphological traits including leaf and stem development, leaflet number, and number of nodes and branches. In particular, the rachis of the leaf was completely reduced and leaves appeared as a bouquet of leaflets. Comparative transcriptomic analysis of 35S::GUS and two POTH15 overexpression lines identified more than 6000 differentially expressed genes, including 2014 common genes between the two overexpression lines. Functional analysis of these genes revealed their involvement in responses to hormones, biotic/abiotic stresses, transcription regulation, and signal transduction. qRT-PCR of selected candidate target genes validated their differential expression in both overexpression lines. Out of 200 randomly chosen POTH15 targets, 173 were found to have at least one tandem TGAC core motif, characteristic of KNOX interaction, within 3.0kb in the upstream sequence of the transcription start site. Overall, this study provides insights to the role of POTH15 in controlling diverse developmental processes in potato. PMID:27217546

  4. Simulating carbon sequestration using cellular automata and land use assessment for Karaj, Iran

    Science.gov (United States)

    Khatibi, Ali; Pourebrahim, Sharareh; Mokhtar, Mazlin Bin

    2018-06-01

    Carbon sequestration has been proposed as a means of slowing the atmospheric and marine accumulation of greenhouse gases. This study used observed and simulated land use/cover changes to investigate and predict carbon sequestration rates in the city of Karaj. Karaj, a metropolis of Iran, has undergone rapid population expansion and associated changes in recent years, and these changes make it suitable for use as a case study for rapidly expanding urban areas. In particular, high quality agricultural space, green space and gardens have rapidly transformed into industrial, residential and urban service areas. Five classes of land use/cover (residential, agricultural, rangeland, forest and barren areas) were considered in the study; vegetation and soil samples were taken from 20 randomly selected locations. The level of carbon sequestration was determined for the vegetation samples by calculating the amount of organic carbon present using the dry plant weight method, and for soil samples by using the method of Walkley and Black. For each area class, average values of carbon sequestration in vegetation and soil samples were calculated to give a carbon sequestration index. A cellular automata approach was used to simulate changes in the classes. Finally, the carbon sequestration indices were combined with simulation results to calculate changes in carbon sequestration for each class. It is predicted that, in the 15 year period from 2014 to 2029, much agricultural land will be transformed into residential land, resulting in a severe reduction in the level of carbon sequestration. Results from this study indicate that expansion of forest areas in urban counties would be an effective means of increasing the levels of carbon sequestration. Finally, future opportunities to include carbon sequestration into the simulation of land use/cover changes are outlined.

  5. Training Graduate and Undergraduate Students in Simulation and Risk Assessment for Carbon Sequestration

    Energy Technology Data Exchange (ETDEWEB)

    McCray, John

    2013-09-30

    Capturing carbon dioxide (CO2) and injecting it into deep underground formations for storage (carbon capture and underground storage, or CCUS) is one way of reducing anthropogenic CO2 emissions. Gas or aqueous-phase leakage may occur due to transport via faults and fractures, through faulty well bores, or through leaky confining materials. Contaminants of concern include aqueous salts and dissolved solids, gaseous or aqueous-phase organic contaminants, and acidic gas or aqueous-phase fluids that can liberate metals from aquifer minerals. Understanding the mechanisms and parameters that can contribute to leakage of the CO2 and the ultimate impact on shallow water aquifers that overlie injection formations is an important step in evaluating the efficacy and risks associated with long-term CO2 storage. Three students were supported on the grant Training Graduate and Undergraduate Students in Simulation and Risk Assessment for Carbon Sequestration. These three students each examined a different aspect of simulation and risk assessment related to carbon dioxide sequestration and the potential impacts of CO2 leakage. Two performed numerical simulation studies, one to assess leakage rates as a function of fault and deep reservoir parameters and one to develop a method for quantitative risk assessment in the event of a CO2 leak and subsequent changes in groundwater chemistry. A third student performed an experimental evaluation of the potential for metal release from sandstone aquifers under simulated leakage conditions. This study has resulted in two student first-authored published papers {Siirila, 2012 #560}{Kirsch, 2014 #770} and one currently in preparation {Menke, In prep. #809}.

  6. [Carbon sequestration status of forest ecosystems in Ningxia Hui Autonomous Region].

    Science.gov (United States)

    Gao, Yang; Jin, Jing-Wei; Cheng, Ji-Min; Su, Ji-Shuai; Zhu, Ren-Bin; Ma, Zheng-Rui; Liu, Wei

    2014-03-01

    Based on the data of Ningxia Hui Autonomous Region forest resources inventory, field investigation and laboratory analysis, this paper studied the carbon sequestration status of forest ecosystems in Ningxia region, estimated the carbon density and storage of forest ecosystems, and analyzed their spatial distribution characteristics. The results showed that the biomass of each forest vegetation component was in the order of arbor layer (46.64 Mg x hm(-2)) > litterfall layer (7.34 Mg x hm(-2)) > fine root layer (6.67 Mg x hm(-2)) > shrub-grass layer (0.73 Mg x hm(-2)). Spruce (115.43 Mg x hm(-2)) and Pinus tabuliformis (94.55 Mg x hm(-2)) had higher vegetation biomasses per unit area than other tree species. Over-mature forest had the highest arbor carbon density among the forests with different ages. However, the young forest had the highest arbor carbon storage (1.90 Tg C) due to its widest planted area. Overall, the average carbon density of forest ecosystems in Ningxia region was 265.74 Mg C x hm(-2), and the carbon storage was 43.54 Tg C. Carbon density and storage of vegetation were 27.24 Mg C x hm(-2) and 4.46 Tg C, respectively. Carbon storage in the soil was 8.76 times of that in the vegetation. In the southern part of Ningxia region, the forest carbon storage was higher than in the northern part, where the low C storage was mainly related to the small forest area and young forest age structure. With the improvement of forest age structure and the further implementation of forestry ecoengineering, the forest ecosystems in Ningxia region would achieve a huge carbon sequestration potential.

  7. Soil carbon sequestration, carbon markets, and conservation agriculture practices: A hypothetical examination in Mozambique

    Directory of Open Access Journals (Sweden)

    Timoteo E. Simone

    2017-09-01

    Full Text Available Payments for Environmental Services (PES are relatively novel mechanisms whereby the adoption of sustainable management practices by a stakeholder is rewarded by incentives linked to external markets. Adoption of PES for conservation agricultural practices (CAPS by smallholder farmers may provide opportunities to increase household income or cover the technology costs of adoption if the carbon sequestration benefits of CAPS are quantifiable, adoption rates are accelerated and maintained, a mechanism exists whereby carbon sequestration services can be compensated, and carbon offset exchange markets are viable. This research suggests a methodology to examine a PES market for carbon offsets generated by the adoption of CAPS by farmers in Mozambique. Assuming a cumulative adoption of 60% over a 20-year period, revenue from PES market participation to CA adopters was two times higher than revenue earned when disadoption occurred midway through the simulation. Lower adoption targets are associated with higher per household returns when fertilizer rates typical to the region are increased. Establishing and maintaining a sustainable PES system in the study region would require significant investment in time and resources. The lack of on-the-ground institutions or local support for such a program would also challenge successful implementation. Finally, the programs where participant success depends on external markets, such as the hypothetical one suggested here, are subject to the ebb and flow of foreign demand for carbon offsets. Addressing these three broad constraints to a PES/CAPS program in the region would require grass-roots driven policy initiatives with buy-in at multiple social, economic, and political levels.

  8. Carbon sequestration and water flow regulation services in mature Mediterranean Forest

    Science.gov (United States)

    Beguería, S.; Ovando, P.

    2015-12-01

    We develop a forestland use and management model that integrates spatially-explicit biophysical and economic data, to estimate the expected pattern of climate regulation services through carbon dioxide (CO2) sequestration in tree and shrubs biomass, and water flow regulation. We apply this model to examine the potential trade-offs and synergies in the supply of CO2 sequestration and water flow services in mature Mediterranean forest, considering two alternative forest management settings. A forest restoration scenario through investments in facilitating forest regeneration, and a forestry activity abandonment scenario as result of unprofitable forest regeneration investment. The analysis is performed for different discount rates and price settings for carbon and water. The model is applied at the farm level in a group of 567 private silvopastoral farms across Andalusia (Spain), considering the main forest species in this region: Quercus ilex, Q. suber, Pinus pinea, P. halepensis, P. pinaster and Eucalyptus sp., as well as for tree-less shrubland and pastures. The results of this research are provided by forest land unit, vegetation, farm and for the group of municipalities where the farms are located. Our results draw attention to the spatial variability of CO2 and water flow regulation services, and point towards a trade-off between those services. The pattern of economic benefits associated to water and carbon services fluctuates according to the assumptions regarding price levels and discounting rates, as well as in connection to the expected forest management and tree growth models, and to spatially-explicit forest attributes such as existing tree and shrubs inventories, the quality of the sites for growing different tree species, soil structure or the climatic characteristics. The assumptions made regarding the inter-temporal preferences and relative prices have a large effect on the estimated economic value of carbon and water services. These results

  9. The Tiehchanshan structure of NW Taiwan: A potential geological reservoir for CO2 sequestration

    Directory of Open Access Journals (Sweden)

    Kenn-Ming Yang

    2017-01-01

    Full Text Available The Tiehchanshan structure is the largest gas-field in the outer foothills of northwestern Taiwan and has been regarded as the best site for CO2 sequestration. This study used a grid of seismic sections and wellbore data to establish a new 3-D geometry of subsurface structure, which was combined with lithofacies characters of the target reservoir rock, the Yutengping Sandstone, to build a geological model for CO2 sequestration. On the surface, the Tiehchanshan structure is characterized by two segmented anticlines offset by a tear fault. The subsurface geometry of the Tiehchanshan structure is, however, composed of two thrust-related anticlines with opposite vergence and laterally increasing fold symmetry toward each other. The folds are softly linked via the transfer zone in the subsurface, implying that the suspected tear fault in the surface transfer zone may not exist in the subsurface. The Yutengping Sandstone is composed of several sandstone units characterized by coarsening-upward cycles. The sandstone member can be further divided into four well-defined sandstone layers, separated by laterally continuous shale layers. In view of the structural and stratigraphic characteristics, the optimum area for CO2 injection and storage is in the structurally high in the northern part of the Tiehchanshan structure. The integrity of the closure and the overlying seal are not disrupted by the pre-orogenic high-angle faults. On the other hand, a thick continuous shale layer within the Yutengping Sandstone isolates the topmost sandy layer from the underlying ones and gives another important factor to the CO2 injection simulation.

  10. Vertical equilibrium with sub-scale analytical methods for geological CO2 sequestration

    KAUST Repository

    Gasda, S. E.

    2009-04-23

    Large-scale implementation of geological CO2 sequestration requires quantification of risk and leakage potential. One potentially important leakage pathway for the injected CO2 involves existing oil and gas wells. Wells are particularly important in North America, where more than a century of drilling has created millions of oil and gas wells. Models of CO 2 injection and leakage will involve large uncertainties in parameters associated with wells, and therefore a probabilistic framework is required. These models must be able to capture both the large-scale CO 2 plume associated with the injection and the small-scale leakage problem associated with localized flow along wells. Within a typical simulation domain, many hundreds of wells may exist. One effective modeling strategy combines both numerical and analytical models with a specific set of simplifying assumptions to produce an efficient numerical-analytical hybrid model. The model solves a set of governing equations derived by vertical averaging with assumptions of a macroscopic sharp interface and vertical equilibrium. These equations are solved numerically on a relatively coarse grid, with an analytical model embedded to solve for wellbore flow occurring at the sub-gridblock scale. This vertical equilibrium with sub-scale analytical method (VESA) combines the flexibility of a numerical method, allowing for heterogeneous and geologically complex systems, with the efficiency and accuracy of an analytical method, thereby eliminating expensive grid refinement for sub-scale features. Through a series of benchmark problems, we show that VESA compares well with traditional numerical simulations and to a semi-analytical model which applies to appropriately simple systems. We believe that the VESA model provides the necessary accuracy and efficiency for applications of risk analysis in many CO2 sequestration problems. © 2009 Springer Science+Business Media B.V.

  11. Simulation of an integrated gasification combined cycle with chemical-looping combustion and carbon dioxide sequestration

    International Nuclear Information System (INIS)

    Jiménez Álvaro, Ángel; López Paniagua, Ignacio; González Fernández, Celina; Rodríguez Martín, Javier; Nieto Carlier, Rafael

    2015-01-01

    Highlights: • A chemical-looping combustion based integrated gasification combined cycle is simulated. • The energetic performance of the plant is analyzed. • Different hydrogen-content synthesis gases are under study. • Energy savings accounting carbon dioxide sequestration and storage are quantified. • A notable increase on thermal efficiency up to 7% is found. - Abstract: Chemical-looping combustion is an interesting technique that makes it possible to integrate power generation from fuels combustion and sequestration of carbon dioxide without energy penalty. In addition, the combustion chemical reaction occurs with a lower irreversibility compared to a conventional combustion, leading to attain a somewhat higher overall thermal efficiency in gas turbine systems. This paper provides results about the energetic performance of an integrated gasification combined cycle power plant based on chemical-looping combustion of synthesis gas. A real understanding of the behavior of this concept of power plant implies a complete thermodynamic analysis, involving several interrelated aspects as the integration of energy flows between the gasifier and the combined cycle, the restrictions in relation with heat balances and chemical equilibrium in reactors and the performance of the gas turbines and the downstream steam cycle. An accurate thermodynamic modeling is required for the optimization of several design parameters. Simulations to evaluate the energetic efficiency of this chemical-looping-combustion based power plant under diverse working conditions have been carried out, and a comparison with a conventional integrated gasification power plant with precombustion capture of carbon dioxide has been made. Two different synthesis gas compositions have been tried to check its influence on the results. The energy saved in carbon capture and storage is found to be significant and even notable, inducing an improvement of the overall power plant thermal efficiency of

  12. Development of very low-level radioactive waste sequestration process criteria

    Energy Technology Data Exchange (ETDEWEB)

    Chan, N.; Wong, P., E-mail: nicholas.chan@cnl.ca [Canadian Nuclear Laboratories, Chalk River, Ontario (Canada)

    2015-12-15

    Segregating radioactive waste at the source and reclassifying radioactive waste to lower waste classes are the key activities to reduce the environmental footprint and long-term liability. In the Canadian Standards Association's radioactive waste classification system, there are 2 sub-classes within low-level radioactive waste: very short-lived radioactive waste and very low-level radioactive waste (VLLW). VLLW has a low hazard potential but is above the Canadian unconditional clearance criteria as set out in Schedule 2 of Nuclear Substances and Devices Regulations. Long-term waste management facilities for VLLW do not require a high degree of containment and isolation. In general, a relatively low-cost near-surface facility with limited regulatory control is suitable for VLLW. At Canadian Nuclear Laboratories' Chalk River Laboratories site an initiative, VLLW Sequestration, was implemented in 2013 to set aside potential VLLW for temporary storage and to be later dispositioned in the planned VLLW facility. As of May 2015, a total of 236m{sup 3} resulting in approximately $1.1 million in total savings have been sequestered. One of the main hurdles in implementing VLLW Sequestration is the development of process criteria. Waste Acceptance Criteria (WAC) are used as a guide or as requirements for determining whether waste is accepted by the waste management facility. Establishment of the process criteria ensures that segregated waste materials have a high likelihood to meet the VLLW WAC and be accepted into the planned VLLW facility. This paper outlines the challenges and various factors which were considered in the development of interim process criteria. (author)

  13. Summary Report on CO{sub 2} Geologic Sequestration & Water Resources Workshop

    Energy Technology Data Exchange (ETDEWEB)

    Varadharajan, C.; Birkholzer, J.; Kraemer, S.; Porse, S.; Carroll, S.; Wilkin, R.; Maxwell, R.; Bachu, S.; Havorka, S.; Daley, T.; Digiulio, D.; Carey, W.; Strasizar, B.; Huerta, N.; Gasda, S.; Crow, W.

    2012-02-15

    The United States Environmental Protection Agency (EPA) and Lawrence Berkeley National Laboratory (LBNL) jointly hosted a workshop on “CO{sub 2} Geologic Sequestration and Water Resources” in Berkeley, June 1–2, 2011. The focus of the workshop was to evaluate R&D needs related to geological storage of CO{sub 2} and potential impacts on water resources. The objectives were to assess the current status of R&D, to identify key knowledge gaps, and to define specific research areas with relevance to EPA’s mission. About 70 experts from EPA, the DOE National Laboratories, industry, and academia came to Berkeley for two days of intensive discussions. Participants were split into four breakout session groups organized around the following themes: Water Quality and Impact Assessment/Risk Prediction; Modeling and Mapping of Area of Potential Impact; Monitoring and Mitigation; Wells as Leakage Pathways. In each breakout group, participants identified and addressed several key science issues. All groups developed lists of specific research needs; some groups prioritized them, others developed short-term vs. long-term recommendations for research directions. Several crosscutting issues came up. Most participants agreed that the risk of CO{sub 2} leakage from sequestration sites that are properly selected and monitored is expected to be low. However, it also became clear that more work needs to be done to be able to predict and detect potential environmental impacts of CO{sub 2} storage in cases where the storage formation may not provide for perfect containment and leakage of CO{sub 2}–brine might occur.

  14. Anthropogenic Impacts on Biological Carbon Sequestration in the Coastal Waters

    Science.gov (United States)

    Jiao, N.

    2016-02-01

    The well-known biological mechanism for carbon sequestration in the ocean is the biological pump (BP) which is driven by primary production initially in the surface water and then dependent on particulate organic carbon sinking process in the water column. In contrast microbial carbon pump (MCP) depends on microbial transformation of dissolved organic carbon (DOC) to refractory DOC (RDOC).Although the BP and the MCP are distinct mechanisms, they are intertwined. Both mechanisms should be considered regarding maximum sequestration of carbon in the ocean. Recent studies have showed that excess nutrients could facilitate the uptake of DOC and enhance both bacterial production and respiration. Bacterial growth efficiency increases with increasing nitrogen concentration to certain levels and then decreases thereafter, while the remaining DOC in the water usually decreases with increasing nitrogen concentration, suggesting that excess nitrogen could simulate uptake of DOC in the environment and thus have negative impacts on the ocean DOC storage.This is somehow against the case of the BP which is known to increase with increasing availability of nutrients. Another responsible factor is the nature of algal products. If it is labile, the organic carbon cannot be preserved in the environment.On top of that, labile organic carbon has priming effects for river discharged semi-labile DOC for bacterial respiration.That is, labile organic matter will become the incubator for bacteria. While bacteria respire DOC into CO2, they consume oxygen, and finally result in hypoxia. Under anoxic condition, anaerobic bacteria successively work on the rest of the organic carbon and produce harmful gasses such as methane and H2S. Such story did have happened during geological events in the history of the earth. The above processes not only result in ecological disasters but also reduce the capacity of carbon sequestration in the ocean. To achieve maximum carbon sinks, both BP and MCP should

  15. Reactor design considerations in mineral sequestration of carbon dioxide

    International Nuclear Information System (INIS)

    Ityokumbul, M.T.; Chander, S.; O'Connor, William K.; Dahlin, David C.; Gerdemann, Stephen J.

    2001-01-01

    One of the promising approaches to lowering the anthropogenic carbon dioxide levels in the atmosphere is mineral sequestration. In this approach, the carbon dioxide reacts with alkaline earth containing silicate minerals forming magnesium and/or calcium carbonates. Mineral carbonation is a multiphase reaction process involving gas, liquid and solid phases. The effective design and scale-up of the slurry reactor for mineral carbonation will require careful delineation of the rate determining step and how it changes with the scale of the reactor. The shrinking core model was used to describe the mineral carbonation reaction. Analysis of laboratory data indicates that the transformations of olivine and serpentine are controlled by chemical reaction and diffusion through an ash layer respectively. Rate parameters for olivine and serpentine carbonation are estimated from the laboratory data

  16. The Carbon Sequestration Potential of Tree Crop Plantations

    DEFF Research Database (Denmark)

    Kongsager, Rico; Napier, Jonas; Mertz, Ole

    2013-01-01

    -wood products to meet domestic and international market requirements at the same time. Financial compensation for such plantations could potentially be covered by the Clean Development Mechanism under the United Nations Framework Convention on Climate Change (FCCC) Kyoto Protocol, but its suitability has also...... been suggested for integration into REDD+(reducing emissions from deforestation, forest degradation and enhancement of forest C stocks) currently being negotiated under the United Nations FCCC. We assess the aboveground C sequestration potential of four major plantation crops – cocoa (Theobroma cacao......), oil palm (Elaeis guineensis), rubber (Hevea brasiliensis), and orange (Citrus sinesis) – cultivated in the tropics. Measurements were conducted in Ghana and allometric equations were applied to estimate biomass. The largest C potential was found in the rubber plantations (214 tC/ha). Cocoa (65 t...

  17. Animals as an indicator of carbon sequestration and valuable landscapes

    Directory of Open Access Journals (Sweden)

    Jan Szyszko

    2011-05-01

    Full Text Available Possibilities of the assessment of a landscape with the use of succession development stages, monitored with the value of the Mean Individual Biomass (MIB of carabid beetles and the occurrence of bird species are discussed on the basis of an example from Poland. Higher variability of the MIB value in space signifies a greater biodiversity. Apart from the variability of MIB, it is suggested to adopt the occurrence of the following animals as indicators, (in the order of importance, representing underlying valuable landscapes: black stork, lesser spotted eagle, white-tailed eagle, wolf, crane and white stork. The higher number of these species and their greater density indicate a higher value of the landscape for biodiversity and ecosystem services, especially carbon sequestration. All these indicators may be useful to assess measures for sustainable land use.

  18. CO2 capture and sequestration: the association's point of view

    International Nuclear Information System (INIS)

    2009-01-01

    This document gives an overview of the opinion of the FNE (France Nature Environnement), a French association involved in the protection of the environment, about the idea of developing technologies enabling the capturing and sequestrating of carbon dioxide. It outlines that industries are considering such technologies as the adequate solution as they would allow a development of activities while limiting greenhouse gas releases. But the FNE has an opposite point of view; advantages and limitations of this technology are thus discussed (reduction of greenhouse gas emissions but with an increase of energy consumption, industrial hazards, mobilization of large financial resources). The principles under which such technologies could be used and financed in some specific situations and under precise conditions are then discussed. Notably, it stresses the importance of a limitation of public financing, of participation and communication, of judicial guarantees

  19. Carbon sequestration, biological diversity, and sustainable development: Integrated forest management

    Energy Technology Data Exchange (ETDEWEB)

    Cairns, M.A. (Environmental Research Lab., Corvallis, OR (United States)); Meganck, R.A. (United Nations Environment Programme for the Wider Caribbean, Kingston (Jamaica))

    Tropical deforestation provides a significant contribution to anthropogenic increases in atmospheric CO[sub 2] concentration that may lead to global warming. Forestation and other forest management options to sequester CO[sub 2] in the tropical latitudes may fail unless they address local economic, social, environmental, and political needs of people in the developing world. Forest management is discussed in terms of three objectives: Carbon sequestration, sustainable development, and biodiversity conservation. An integrated forest management strategy of land-use planning is proposed to achieve these objectives and is centered around: Preservation of primary forest, intensified use of nontimber resources, agroforestry, and selective use of plantation forestry. 89 refs., 1 fig., 1 tab.

  20. Fluid characterization for miscible EOR projects and CO2 sequestration

    DEFF Research Database (Denmark)

    Jessen, Kristian; Stenby, Erling Halfdan

    2007-01-01

    Accurate performance prediction of miscible enhanced-oil-recovery (EOR) projects or CO, sequestration in depleted oil and gas reservoirs relies in part on the ability of an equation-of-state (EOS) model to adequately represent the properties of a wide range of mixtures of the resident fluid...... in the data reduction and demonstrate that for some gas/oil systems, swelling tests do not contribute to a more accurate prediction of multicontact miscibility. Finally, we report on the impact that use of EOS models based on different characterization procedures can have on recovery predictions from dynamic...... and the injected fluid(s). The mixtures that form when gas displaces oil in a porous medium will, in many cases, differ significantly from compositions created in swelling tests and other standard pressure/volume/temperature (PVT) experiments. Multicontact experiments (e.g., slimtube displacements) are often used...

  1. Carbon sequestration in a re-established wetland

    DEFF Research Database (Denmark)

    Philippsen, Bente; Hoffmann, Carl Christian; Olsen, Jesper

    , it was brought back to its original meandering course (between Brobyværk and Lyndelse, 4.6 km of straight channel were remeandered to 6 km of natural channel with 16 meander bows) and 125 ha of wetlands were restored. One of the expected benefits of this operation is the increased sequestration of carbon...... does not yield the time of deposition, but rather indicate the source of the carbon. A complicating factor are reservoir ages of plants contributing to the sediment organic matter. Therefore, we also radiocarbon dated aquatic and terrestrial vegetation. Surprisingly, not only aquatic, but also meadow...... plants such as soft rush, rough bluegrass and meadowsweet have considerable reservoir effects. CO2 from decaying vegetation seems to be an important carbon source for some meadow plants, mimicking a canopy effect in the open land....

  2. Forest and wood products role in carbon sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Sampson, R.N.

    1997-12-31

    An evaluation of the use of U.S. forests and forest products for carbon emission mitigation is presented. The current role of forests in carbon sequestration is described in terms of regional differences and forest management techniques. The potential for increasing carbon storage by converting marginal crop and pasture land, increasing timberland growth, reducing wildfire losses, and changing timber harvest methods is examined. Post-harvest carbon flows, environmental impacts of wood products, biomass energy crops, and increased use of energy-conserving trees are reviewed for their potential in reducing or offsetting carbon emissions. It is estimated that these techniques could offset 20 to 40 percent of the carbon emitted annually in the U.S. 39 refs., 5 tabs.

  3. Effect of bile acid sequestrants on glycaemic control

    DEFF Research Database (Denmark)

    Hansen, Morten; Sonne, David Peick; Mikkelsen, Kristian Hallundbæk

    2012-01-01

    of hypercholesterolaemia: colestipol, cholestyramine and colesevelam. The BAS colestimide/colestilan is used in Japan. Colesevelam was recently approved by the FDA for the treatment of T2DM. We plan to provide a systematic review with meta-analysis of the glucose-lowering effect of BASs with the aim to evaluate......In addition to the lipid-lowering effect of bile acid sequestrants (BASs), they also lower blood glucose and, therefore, could be beneficial in the treatment of patients with type 2 diabetes mellitus (T2DM). Three oral BASs are approved by the US Food and Drug Administration (FDA) for the treatment...... their potential as glucose-lowering agents in patients with T2DM....

  4. Management of water extracted from carbon sequestration projects

    Energy Technology Data Exchange (ETDEWEB)

    Harto, C. B.; Veil, J. A. (Environmental Science Division)

    2011-03-11

    Throughout the past decade, frequent discussions and debates have centered on the geological sequestration of carbon dioxide (CO{sub 2}). For sequestration to have a reasonably positive impact on atmospheric carbon levels, the anticipated volume of CO{sub 2} that would need to be injected is very large (many millions of tons per year). Many stakeholders have expressed concern about elevated formation pressure following the extended injection of CO{sub 2}. The injected CO{sub 2} plume could potentially extend for many kilometers from the injection well. If not properly managed and monitored, the increased formation pressure could stimulate new fractures or enlarge existing natural cracks or faults, so the CO{sub 2} or the brine pushed ahead of the plume could migrate vertically. One possible tool for management of formation pressure would be to extract water already residing in the formation where CO{sub 2} is being stored. The concept is that by removing water from the receiving formations (referred to as 'extracted water' to distinguish it from 'oil and gas produced water'), the pressure gradients caused by injection could be reduced, and additional pore space could be freed up to sequester CO{sub 2}. Such water extraction would occur away from the CO{sub 2} plume to avoid extracting a portion of the sequestered CO{sub 2} along with the formation water. While water extraction would not be a mandatory component of large-scale carbon storage programs, it could provide many benefits, such as reduction of pressure, increased space for CO{sub 2} storage, and potentially, 'plume steering.' Argonne National Laboratory is developing information for the U.S. Department of Energy's (DOE's) National Energy Technology Laboratory (NETL) to evaluate management of extracted water. If water is extracted from geological formations designated to receive injected CO{sub 2} for sequestration, the project operator will need to identify methods

  5. Imaging approach to the diagnosis of pulmonary sequestration

    International Nuclear Information System (INIS)

    Hang, J.D.; Guo, Q.Y.; Chen, C.X.; Chen, L.Y.

    1996-01-01

    Purpose: To describe the characteristic features of pulmonary sequestration (PS), to evaluate the usefulness of various imaging modalities, and to find a rational approach to accurate diagnosis. Material and Methods: Twenty-four patients with PS proved by operation and pathology were reviewed retrospectively. Plain chest films were done in all patients, bronchography in 3, sonography in 14, CT in 6 (including CT angiography in 1 case), MR in 8 (including MR angiography in 1 case) and aortography in 12 (including DSA in 1 case). Results: Plain chest films demonstrated a solid mass in 14 patients and a cystic mass in 10. Bronchograms showed displacement of adjacent bronchi with no filling of contrast medium within the lesion in 2 cases, while another case had a blind intermediate portion of the right bronchus (hypoplasia of middle and lower lobes associated with extralobar sequestration). Sonography demonstrated a solid lung mass in 12 cases and a solid mass with cystic areas in 2, and detected vessel-like structures within the mass or in its surroundings in 12. Doppler analysis showed arterial spectral wave confirming a feeding artery. CT revealed a solid mass in all patients, a mass with low density area in 4, and emphysema surrounding the mass in 3. MR imaging depicted anomalous arteries in all patients and venous drainage in 4 cases. Aortography demonstrated anomalous systemic arterial supply to the PS in all patients. In this series, 21 cases (87.5%) were correctly diagnosed preoperatively by the imaging modalities. Conclusion: Plain chest films can provide a diagnostic due to PS. Sonography, CT and MR are helpful for showing arterial blood supply and for making a definite diagnosis. We recommend a rational imaging approach for the diagnosis of PS. (orig.)

  6. Global carbon sequestration in tidal, saline wetland soils

    Science.gov (United States)

    Chmura, G.L.; Anisfeld, S.C.; Cahoon, D.R.; Lynch, J.C.

    2003-01-01

    Wetlands represent the largest component of the terrestrial biological carbon pool and thus play an important role in global carbon cycles. Most global carbon budgets, however, have focused on dry land ecosystems that extend over large areas and have not accounted for the many small, scattered carbon-storing ecosystems such as tidal saline wetlands. We compiled data for 154 sites in mangroves and salt marshes from the western and eastern Atlantic and Pacific coasts, as well as the Indian Ocean, Mediterranean Ocean, and Gulf of Mexico. The set of sites spans a latitudinal range from 22.4??S in the Indian Ocean to 55.5??N in the northeastern Atlantic. The average soil carbon density of mangrove swamps (0.055 ?? 0.004 g cm-3) is significantly higher than the salt marsh average (0.039 ?? 0.003 g cm-3). Soil carbon density in mangrove swamps and Spartina patens marshes declines with increasing average annual temperature, probably due to increased decay rates at higher temperatures. In contrast, carbon sequestration rates were not significantly different between mangrove swamps and salt marshes. Variability in sediment accumulation rates within marshes is a major control of carbon sequestration rates masking any relationship with climatic parameters. Globally, these combined wetlands store at least 44.6 Tg C yr-1 and probably more, as detailed areal inventories are not available for salt marshes in China and South America. Much attention has been given to the role of freshwater wetlands, particularly northern peatlands, as carbon sinks. In contrast to peatlands, salt marshes and mangroves release negligible amounts of greenhouse gases and store more carbon per unit area. Copyright 2003 by the American Geophysical Union.

  7. The role of renewable bioenergy in carbon dioxide sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Kinoshita, C.M. [Hawaii Natural Energy Inst., Honolulu, HI (United States)

    1993-12-31

    The use of renewable resources represents a sound approach to producing clean energy and reducing the dependence on diminishing reserves of fossil fuels. Unfortunately, the widespread interest in renewable energy in the 1970s, spurred by escalating fossil fuel prices, subsided with the collapse of energy prices in the mid 1980s. Today, it is largely to reverse alarming environmental trends, particularly the buildup of atmospheric carbon dioxide, rather than to reduce the cost of energy, that renewable energy resources are being pursued. This discussion focuses on a specific class of renewable energy resources - biomass. Unlike most other classes of renewable energy touted for controlling atmospheric carbon dioxide concentrations, e.g., hydro, direct solar, wind, geothermal, and ocean thermal, which produce usable forms of energy while generating little or no carbon dioxide emissions, bioenergy almost always involves combustion and therefore generates carbon dioxide; however, if used on a sustained basis, bio-energy would not contribute to the build-up of atmospheric carbon dioxide because the amount released in combustion would be balanced by that taken up via photosynthesis. It is in that context, i.e., sustained production of biomass as a modern energy carrier, rather than reforestation for carbon sequestration, that biomass is being discussed here, since biomass can play a much greater role in controlling global warming by displacing fossil fuels than by being used strictly for carbon sequestration (partly because energy crop production can reduce fossil carbon dioxide emissions indefinitely, whereas under the reforestation strategy, carbon dioxide abatement ceases at forest maturity).

  8. Distribution characteristics of liquid sequestration in rats with sepsis

    Directory of Open Access Journals (Sweden)

    Bin LI

    2012-03-01

    Full Text Available Objective To investigate the distribution characteristics of organs with liquid sequestration during fluid resuscitation in rats with sepsis. Methods Fifty male Wistar rats were randomly divided into five groups: control group (n=10, sepsis group (n=10, crystalloid group (n=10, albumin group (n=10, and artificial colloid (HAES group (n=10. The sepsis model was reproduced by cecal ligation and puncture. The mean arterial pressure was monitored with carotid artery intubation. Twelve hours after fluid infusion by micro-infusion pump via the femoral vein, tissues from the heart, liver, lungs, kidney (right, and small intestine were harvested to observe the pathological changes and calculate the tissue water content. Results The water content of every visceral tissue was higher in the sepsis group than in the control group (P < 0.05; the water content in the heart, liver, and lung tissues was higher in the albumin group than in the crystalloid group (P < 0.05. The water content in both albumin and crystalloid groups was higher than that in the sepsis group (P < 0.05. Moreover, the water content in the heart, liver, and lungs in the HAES group was lower than that in the crystalloid and albumin groups (P < 0.05. Cellular injuries were more severe in the heart, liver, and lungs than in the intestine and kidney in the crystalloid group and albumin group under electron-microscope. Conclusion Liquid sequestration exists mainly in the lungs, heart, and liver of rats with sepsis during fluid resuscitation. The phenomenon is less evident in the kidney and small intestine. Artificial colloid can reduce capillary leak with a good volume expansion effect.

  9. Geomechanical Response of Jointed Caprock During CO2 Geological Sequestration

    Science.gov (United States)

    Newell, P.; Martinez, M. J.; Bishop, J. E.

    2014-12-01

    Geological sequestration of CO2 refers to the injection of supercritical CO2 into deep reservoirs trapped beneath a low-permeability caprock formation. Maintaining caprock integrity during the injection process is the most important factor for a successful injection. In this work we evaluate the potential for jointed caprock during injection scenarios using coupled three-dimensional multiphase flow and geomechanics modeling. Evaluation of jointed/fractured caprock systems is of particular concern to CO2 sequestration because creation or reactivation of joints (mechanical damage) can lead to enhanced pathways for leakage. In this work, we use an equivalent continuum approach to account for the joints within the caprock. Joint's aperture and non-linear stiffness of the caprock will be updated dynamically based on the effective normal stress. Effective permeability field will be updated based on the joints' aperture creating an anisotropic permeability field throughout the caprock. This feature would add another coupling between the solid and fluid in addition to basic Terzaghi's effective stress concept. In this study, we evaluate the impact of the joint's orientation and geometry of caprock and reservoir layers on geomechanical response of the CO2 geological systems. This work is supported as part of the Center for Frontiers of Subsurface Energy Security, an Energy Frontier Research Center funded by the U.S. Department of Energy, Office of Science, Office of Basic Energy Sciences under Award Number DE-SC0001114. Sandia National Laboratories is a multi-program laboratory managed and operated by Sandia Corporation, a wholly owned subsidiary of Lockheed Martin Corporation, for the U.S. Department of Energy's National Nuclear Security Administration under contract DE-AC04-94AL85000.

  10. Historical forest baselines reveal potential for continued carbon sequestration

    Science.gov (United States)

    Rhemtulla, Jeanine M.; Mladenoff, David J.; Clayton, Murray K.

    2009-01-01

    One-third of net CO2 emissions to the atmosphere since 1850 are the result of land-use change, primarily from the clearing of forests for timber and agriculture, but quantifying these changes is complicated by the lack of historical data on both former ecosystem conditions and the extent and spatial configuration of subsequent land use. Using fine-resolution historical survey records, we reconstruct pre-EuroAmerican settlement (1850s) forest carbon in the state of Wisconsin, examine changes in carbon after logging and agricultural conversion, and assess the potential for future sequestration through forest recovery. Results suggest that total above-ground live forest carbon (AGC) fell from 434 TgC before settlement to 120 TgC at the peak of agricultural clearing in the 1930s and has since recovered to approximately 276 TgC. The spatial distribution of AGC, however, has shifted significantly. Former savanna ecosystems in the south now store more AGC because of fire suppression and forest ingrowth, despite the fact that most of the region remains in agriculture, whereas northern forests still store much less carbon than before settlement. Across the state, continued sequestration in existing forests has the potential to contribute an additional 69 TgC. Reforestation of agricultural lands, in particular, the formerly high C-density forests in the north-central region that are now agricultural lands less optimal than those in the south, could contribute 150 TgC. Restoring historical carbon stocks across the landscape will therefore require reassessing overall land-use choices, but a range of options can be ranked and considered under changing needs for ecosystem services. PMID:19369213

  11. Land-use change and carbon sinks: Econometric estimation of the carbon sequestration supply function

    Energy Technology Data Exchange (ETDEWEB)

    Lubowski, Ruben N.; Plantinga, Andrew J.; Stavins, Robert N.

    2001-01-01

    Increased attention by policy makers to the threat of global climate change has brought with it considerable interest in the possibility of encouraging the expansion of forest area as a means of sequestering carbon dioxide. The marginal costs of carbon sequestration or, equivalently, the carbon sequestration supply function will determine the ultimate effects and desirability of policies aimed at enhancing carbon uptake. In particular, marginal sequestration costs are the critical statistic for identifying a cost-effective policy mix to mitigate net carbon dioxide emissions. We develop a framework for conducting an econometric analysis of land use for the forty-eight contiguous United States and employing it to estimate the carbon sequestration supply function. By estimating the opportunity costs of land on the basis of econometric evidence of landowners' actual behavior, we aim to circumvent many of the shortcomings of previous sequestration cost assessments. By conducting the first nationwide econometric estimation of sequestration costs, endogenizing prices for land-based commodities, and estimating land-use transition probabilities in a framework that explicitly considers the range of land-use alternatives, we hope to provide better estimates eventually of the true costs of large-scale carbon sequestration efforts. In this way, we seek to add to understanding of the costs and potential of this strategy for addressing the threat of global climate change.

  12. Land-use change and carbon sinks: Econometric estimation of the carbon sequestration supply function; FINAL

    International Nuclear Information System (INIS)

    Lubowski, Ruben N.; Plantinga, Andrew J.; Stavins, Robert N.

    2001-01-01

    Increased attention by policy makers to the threat of global climate change has brought with it considerable interest in the possibility of encouraging the expansion of forest area as a means of sequestering carbon dioxide. The marginal costs of carbon sequestration or, equivalently, the carbon sequestration supply function will determine the ultimate effects and desirability of policies aimed at enhancing carbon uptake. In particular, marginal sequestration conts are the critical statistic for identifying a cost-effective policy mix to mitigate net carbon dioxide emissions. We develop a framework for conducting an econometric analysis of land use for the forty-eight contiguous United States and employing it to estimate the carbon sequestration supply function. By estimating the opportunity costs of land on the basis of econometric evidence of landowners' actual behavior, we aim to circumvent many of the shortcomings of previous sequestration cost assessments. By conducting the first nationwide econometric estimation of sequestration costs, endogenizing prices for land-based commodities, and estimating land-use transition probabilities in a framework that explicitly considers the range of land-use alternatives, we hope to provide better estimates eventually of the true costs of large-scale carbon sequestration efforts. In this way, we seek to add to understanding of the costs and potential of this strategy for addressing the threat of global climate change

  13. A national look at carbon capture and storage-National carbon sequestration database and geographical information system (NatCarb)

    Science.gov (United States)

    Carr, T.R.; Iqbal, A.; Callaghan, N.; ,; Look, K.; Saving, S.; Nelson, K.

    2009-01-01

    The US Department of Energy's Regional Carbon Sequestration Partnerships (RCSPs) are responsible for generating geospatial data for the maps displayed in the Carbon Sequestration Atlas of the United States and Canada. Key geospatial data (carbon sources, potential storage sites, transportation, land use, etc.) are required for the Atlas, and for efficient implementation of carbon sequestration on a national and regional scale. The National Carbon Sequestration Database and Geographical Information System (NatCarb) is a relational database and geographic information system (GIS) that integrates carbon storage data generated and maintained by the RCSPs and various other sources. The purpose of NatCarb is to provide a national view of the carbon capture and storage potential in the U.S. and Canada. The digital spatial database allows users to estimate the amount of CO2 emitted by sources (such as power plants, refineries and other fossil-fuel-consuming industries) in relation to geologic formations that can provide safe, secure storage sites over long periods of time. The NatCarb project is working to provide all stakeholders with improved online tools for the display and analysis of CO2 carbon capture and storage data. NatCarb is organizing and enhancing the critical information about CO2 sources and developing the technology needed to access, query, model, analyze, display, and distribute natural resource data related to carbon management. Data are generated, maintained and enhanced locally at the RCSP level, or at specialized data warehouses, and assembled, accessed, and analyzed in real-time through a single geoportal. NatCarb is a functional demonstration of distributed data-management systems that cross the boundaries between institutions and geographic areas. It forms the first step toward a functioning National Carbon Cyberinfrastructure (NCCI). NatCarb provides access to first-order information to evaluate the costs, economic potential and societal issues of

  14. Characterization of Most Promising Sequestration Formations in the Rocky Mountain Region (RMCCS)

    Energy Technology Data Exchange (ETDEWEB)

    McPherson, Brian; Matthews, Vince

    2013-09-30

    The primary objective of the “Characterization of Most Promising Carbon Capture and Sequestration Formations in the Central Rocky Mountain Region” project, or RMCCS project, is to characterize the storage potential of the most promising geologic sequestration formations within the southwestern U.S. and the Central Rocky Mountain region in particular. The approach included an analysis of geologic sequestration formations under the Craig Power Station in northwestern Colorado, and application or extrapolation of those local-scale results to the broader region. A ten-step protocol for geologic carbon storage site characterization was a primary outcome of this project.

  15. The United States Department of Energy's Regional Carbon Sequestration Partnerships Program Validation Phase.

    Science.gov (United States)

    Litynski, John T; Plasynski, Sean; McIlvried, Howard G; Mahoney, Christopher; Srivastava, Rameshwar D

    2008-01-01

    This paper reviews the Validation Phase (Phase II) of the Department of Energy's Regional Carbon Sequestration Partnerships initiative. In 2003, the U.S. Department of Energy created a nationwide network of seven Regional Carbon Sequestration Partnerships (RCSP) to help determine and implement the technology, infrastructure, and regulations most appropriate to promote carbon sequestration in different regions of the nation. The objectives of the Characterization Phase (Phase I) were to characterize the geologic and terrestrial opportunities for carbon sequestration; to identify CO(2) point sources within the territories of the individual partnerships; to assess the transportation infrastructure needed for future deployment; to evaluate CO(2) capture technologies for existing and future power plants; and to identify the most promising sequestration opportunities that would need to be validated through a series of field projects. The Characterization Phase was highly successful, with the following achievements: established a national network of companies and professionals working to support sequestration deployment; created regional and national carbon sequestration atlases for the United States and portions of Canada; evaluated available and developing technologies for the capture of CO(2) from point sources; developed an improved understanding of the permitting requirements that future sequestration activities will need to address as well as defined the gap in permitting requirements for large scale deployment of these technologies; created a raised awareness of, and support for, carbon sequestration as a greenhouse gas (GHG) mitigation option, both within industry and among the general public; identified the most promising carbon sequestration opportunities for future field tests; and established protocols for project implementation, accounting, and management. Economic evaluation was started and is continuing and will be a factor in project selection. During the

  16. Wind Erosion Caused by Land Use Changes Significantly Reduces Ecosystem Carbon Storage and Carbon Sequestration Potentials in Grassland

    Science.gov (United States)

    Li, P.; Chi, Y. G.; Wang, J.; Liu, L.

    2017-12-01

    Wind erosion exerts a fundamental influence on the biotic and abiotic processes associated with ecosystem carbon (C) cycle. However, how wind erosion under different land use scenarios will affect ecosystem C balance and its capacity for future C sequestration are poorly quantified. Here, we established an experiment in a temperate steppe in Inner Mongolia, and simulated different intensity of land uses: control, 50% of aboveground vegetation removal (50R), 100% vegetation removal (100R) and tillage (TI). We monitored lateral and vertical carbon flux components and soil characteristics from 2013 to 2016. Our study reveals three key findings relating to the driving factors, the magnitude and consequence of wind erosion on ecosystem C balance: (1) Frequency of heavy wind exerts a fundamental control over the severity of soil erosion, and its interaction with precipitation and vegetation characteristics explained 69% variation in erosion intensity. (2) With increases in land use intensity, the lateral C flux induced by wind erosion increased rapidly, equivalent to 33%, 86%, 111% and 183% of the net ecosystem exchange of the control site under control, 50R, 100R and TI sites, respectively. (3) After three years' treatment, erosion induced decrease in fine fractions led to 31%, 43%, 85% of permanent loss of C sequestration potential in the surface 5cm soil for 50R, 100R and TI sites. Overall, our study demonstrates that lateral C flux associated with wind erosion is too large to be ignored. The loss of C-enriched fine particles not only reduces current ecosystem C content, but also results in irreversible loss of future soil C sequestration potential. The dynamic soil characteristics need be considered when projecting future ecosystem C balance in aeolian landscape. We also propose that to maintain the sustainability of grassland ecosystems, land managers should focus on implementing appropriate land use rather than rely on subsequent managements on degraded soils.

  17. The impact of CO2 on shallow groundwater chemistry: observations at a natural analog site and implications for carbon sequestration

    Energy Technology Data Exchange (ETDEWEB)

    Keating, Elizabeth [Los Alamos National Laboratory; Fessenden, Julianna [Los Alamos National Laboratory; Kanjorski, Nancy [NON LANL; Koning, Dan [NM BUREAU OF GEOLOGY AND MINERAL RESOURCES; Pawar, Rajesh [Los Alamos National Laboratory

    2008-01-01

    In a natural analog study of risks associated with carbon sequestration, impacts of CO{sub 2} on shallow groundwater quality have been measured in a sandstone aquifer in New Mexico, USA. Despite relatively high levels of dissolved CO{sub 2}, originating from depth and producing geysering at one well, pH depression and consequent trace element mobility are relatively minor effects due to the buffering capacity of the aquifer. However, local contamination due to influx of saline waters in a subset of wells is significant. Geochemical modeling of major ion concentrations suggests that high alkalinity and carbonate mineral dissolution buffers pH changes due to CO{sub 2} influx. Analysis oftrends in dissolved trace elements, chloride, and CO2 reveal no evidence of in-situ trace element mobilization. There is clear evidence, however, that As, U, and Pb are locally co-transported into the aquifer with CO{sub 2}-rich saline water. This study illustrates the role that local geochemical conditions will play in determining the effectiveness of monitoring strategies for CO{sub 2} leakage. For example, if buffering is significant, pH monitoring may not effectively detect CO2 leakage. This study also highlights potential complications that CO{sub 2}carrier fluids, such as saline waters, pose in monitoring impacts ofgeologic sequestration.

  18. Mechanisms of aqueous wollastonite carbonation as a possible CO2 sequestration process

    NARCIS (Netherlands)

    Huijgen, W.J.J.; Witkamp, G.J.; Comans, R.N.J.

    2006-01-01

    The mechanisms of aqueous wollastonite carbonation as a possible carbon dioxide sequestration process were investigated experimentally by systematic variation of the reaction temperature, CO2 pressure, particle size, reaction time, liquid to solid ratio and agitation power. The carbonation reaction

  19. Microbial electrolysis desalination and chemical-production cell for CO2 sequestration

    KAUST Repository

    Zhu, Xiuping; Logan, Bruce E.

    2014-01-01

    Mineral carbonation can be used for CO2 sequestration, but the reaction rate is slow. In order to accelerate mineral carbonation, acid generated in a microbial electrolysis desalination and chemical-production cell (MEDCC) was examined to dissolve

  20. A new look at ocean carbon remineralization for estimating deepwater sequestration

    DEFF Research Database (Denmark)

    Guidi, L.; Legendre, L.; Reygondeau, Gabriel

    2015-01-01

    provinces, where these estimates range between -50 and +100% of the commonly used globally uniform remineralization value. We apply the regionalized values to satellite-derived estimates of upper ocean POC export to calculate regionalized and ocean-wide deep carbon fluxes and sequestration. The resulting....... These results stress that variable remineralization and sequestration depth should be used to model ocean carbon sequestration and feedback on the atmosphere......The "biological carbon pump" causes carbon sequestration in deep waters by downward transfer of organic matter, mostly as particles. This mechanism depends to a great extent on the uptake of CO2 by marine plankton in surface waters and subsequent sinking of particulate organic carbon (POC) through...

  1. [Computed tomography semiotics of osteonecrosis and sequestration in chronic hematogenic osteomyelitis].

    Science.gov (United States)

    D'iachkova, G V; Mitina, Iu L

    2007-01-01

    Based on the data of computed tomography, radiography and densitometry in 39 patients the authors describe in detail the signs of osteonecrosis and sequestration of different localization and extension.

  2. Carbon Sequestration in Dryland and Irrigated Agroecosystems: Quantification at Different Scales for Improved Prediction

    Energy Technology Data Exchange (ETDEWEB)

    Verma, Shashi B. [Univ. of Nebraska, Lincoln, NE (United States); Cassman, Kenneth G. [Univ. of Nebraska, Lincoln, NE (United States); Arkebauer, Timothy J. [Univ. of Nebraska, Lincoln, NE (United States); Hubbard, Kenneth G. [Univ. of Nebraska, Lincoln, NE (United States); Knops, Johannes M. [Univ. of Nebraska, Lincoln, NE (United States); Suyker, Andrew E. [Univ. of Nebraska, Lincoln, NE (United States)

    2012-09-14

    The overall objective of this research is to improve our basic understanding of the biophysical processes that govern C sequestration in major rainfed and irrigated agroecosystems in the north-central USA.

  3. Chronic idiopathic thrombocytopenic purpura (ITP): site of platelet sequestration and results of splenectomy

    International Nuclear Information System (INIS)

    Gugliotta, L.; Guarini, A.; Motta, M.R.; Bachetti, G.; Tura, S.; Isacchi, G.; Ciccone, F.; Lattarini, C.; Mazzucconi, M.G.; Mandelli, F.; Baccarani, M.

    1981-01-01

    51 Cr-platelet kinetics study was performed in 197 patients with chronic ITP after corticosteroid therapy had failed to induce a long lasting remission. The incidence of splenic, spleno-hepatic, hepatic and diffuse platelet sequestration site was 58%, 17%, 6% and 19%, respectively. Splenic and spleno-hepatic sequestration sites were more frequent in patients less than 30 years old and in patients with a platelet count lower than 50 x 10 9 /l. 111 patients were splenectomized shortly after the study. Normalization of the platelet count was obtained more frequently in patients with splenic and spleno-hepatic sequestration than in the others. Labelled platelet sequestration site was the best predictor of the outcome of splenectomy. Platelet kinetics is a non-invasive investigation that should be performed early after the diagnosis of chronic ITP in all patients eligible for splenectomy. (author)

  4. Soil carbon sequestration is a climate stabilization wedge: comments on Sommer and Bossio (2014).

    Science.gov (United States)

    Lassaletta, Luis; Aguilera, Eduardo

    2015-04-15

    Sommer and Bossio (2014) model the potential soil organic carbon (SOC) sequestration in agricultural soils (croplands and grasslands) during the next 87 years, concluding that this process cannot be considered as a climate stabilization wedge. We argue, however, that the amounts of SOC potentially sequestered in both scenarios (pessimistic and optimistic) fulfil the requirements for being considered as wedge because in both cases at least 25 GtC would be sequestered during the next 50 years. We consider that it is precisely in the near future, and meanwhile other solutions are developed, when this stabilization effort is most urgent even if after some decades the sequestration rate is significantly reduced. Indirect effects of SOC sequestration on mitigation could reinforce the potential of this solution. We conclude that the sequestration of organic carbon in agricultural soils as a climate change mitigation tool still deserves important attention for scientists, managers and policy makers. Copyright © 2015 Elsevier Ltd. All rights reserved.

  5. Second generation CO2 FEP analysis: Cassifcarbon sequestration scenario identification framework

    NARCIS (Netherlands)

    Yavuz, F.T.; Tilburg, T. van; Pagnier, H.

    2008-01-01

    A novel scenario analysis framework has been created, called Carbon Sequestration Scenario Identification Framework (CASSIF). This framework addresses containment performance defined by the three major categories: well, fault and seal integrity. The relevant factors that influence the integrity are

  6. High-Performance Modeling of Carbon Dioxide Sequestration by Coupling Reservoir Simulation and Molecular Dynamics

    KAUST Repository

    Bao, Kai; Yan, Mi; Allen, Rebecca; Salama, Amgad; Lu, Ligang; Jordan, Kirk E.; Sun, Shuyu; Keyes, David E.

    2015-01-01

    The present work describes a parallel computational framework for carbon dioxide (CO2) sequestration simulation by coupling reservoir simulation and molecular dynamics (MD) on massively parallel high-performance-computing (HPC) systems

  7. Enhanced Performance Assessment System (EPAS) for carbon sequestration.

    Energy Technology Data Exchange (ETDEWEB)

    Wang, Yifeng; Sun, Amy Cha-Tien; McNeish, Jerry A. (Sandia National Laboratories, Livermore, CA); Dewers, Thomas A.; Hadgu, Teklu; Jove-Colon, Carlos F.

    2010-09-01

    Carbon capture and sequestration (CCS) is an option to mitigate impacts of atmospheric carbon emission. Numerous factors are important in determining the overall effectiveness of long-term geologic storage of carbon, including leakage rates, volume of storage available, and system costs. Recent efforts have been made to apply an existing probabilistic performance assessment (PA) methodology developed for deep nuclear waste geologic repositories to evaluate the effectiveness of subsurface carbon storage (Viswanathan et al., 2008; Stauffer et al., 2009). However, to address the most pressing management, regulatory, and scientific concerns with subsurface carbon storage (CS), the existing PA methodology and tools must be enhanced and upgraded. For example, in the evaluation of a nuclear waste repository, a PA model is essentially a forward model that samples input parameters and runs multiple realizations to estimate future consequences and determine important parameters driving the system performance. In the CS evaluation, however, a PA model must be able to run both forward and inverse calculations to support optimization of CO{sub 2} injection and real-time site monitoring as an integral part of the system design and operation. The monitoring data must be continually fused into the PA model through model inversion and parameter estimation. Model calculations will in turn guide the design of optimal monitoring and carbon-injection strategies (e.g., in terms of monitoring techniques, locations, and time intervals). Under the support of Laboratory-Directed Research & Development (LDRD), a late-start LDRD project was initiated in June of Fiscal Year 2010 to explore the concept of an enhanced performance assessment system (EPAS) for carbon sequestration and storage. In spite of the tight time constraints, significant progress has been made on the project: (1) Following the general PA methodology, a preliminary Feature, Event, and Process (FEP) analysis was performed for

  8. An equity assessment of introducing uncertain forest carbon sequestration in EU climate policy

    International Nuclear Information System (INIS)

    Münnich Vass, Miriam; Elofsson, Katarina; Gren, Ing-Marie

    2013-01-01

    Large emissions of greenhouse gases are expected to cause major environmental problems in the future. European policy makers have therefore declared that they aim to implement cost-efficient and fair policies to reduce carbon emissions. The purpose of this paper is to assess whether the cost of the EU policies for 2020 can be reduced through the inclusion of carbon sequestration as an abatement option while equity is also improved. The assessment is done by numerical calculations using a chance-constrained partial equilibrium model of the EU Emissions Trading Scheme and national effort-sharing targets, where forest sequestration is introduced as an uncertain abatement option. Fairness is evaluated by calculation of Gini-coefficients for six equity criteria to policy outcomes. The estimated Gini-coefficients range between 0.11 and 0.32 for the current policy, between 0.16 and 0.66 if sequestration is included and treated as certain, and between 0.19 and 0.38 when uncertainty about sequestration is taken into account and policy-makers wish to meet targets with at least 90 per cent probability. The results show that fairness is reduced when sequestration is included and that the impact is larger when sequestration is treated as certain. - Highlights: • We model EU's CO 2 emission reduction targets to 2020 for the 27 member states. • We assess the equity of including forest carbon sequestration in EU policy with six equity criteria. • A stochastic partial equilibrium model is used, in which abatement cost is minimised. • Current burden sharing within the EU is quite fair when compared with current income inequality. • The abatement cost is reduced and inequality increased when including sequestration

  9. Near-term deployment of carbon capture and sequestration from biorefineries in the United States.

    Science.gov (United States)

    Sanchez, Daniel L; Johnson, Nils; McCoy, Sean T; Turner, Peter A; Mach, Katharine J

    2018-05-08

    Capture and permanent geologic sequestration of biogenic CO 2 emissions may provide critical flexibility in ambitious climate change mitigation. However, most bioenergy with carbon capture and sequestration (BECCS) technologies are technically immature or commercially unavailable. Here, we evaluate low-cost, commercially ready CO 2 capture opportunities for existing ethanol biorefineries in the United States. The analysis combines process engineering, spatial optimization, and lifecycle assessment to consider the technical, economic, and institutional feasibility of near-term carbon capture and sequestration (CCS). Our modeling framework evaluates least cost source-sink relationships and aggregation opportunities for pipeline transport, which can cost-effectively transport small CO 2 volumes to suitable sequestration sites; 216 existing US biorefineries emit 45 Mt CO 2 annually from fermentation, of which 60% could be captured and compressed for pipeline transport for under $25/tCO 2 A sequestration credit, analogous to existing CCS tax credits, of $60/tCO 2 could incent 30 Mt of sequestration and 6,900 km of pipeline infrastructure across the United States. Similarly, a carbon abatement credit, analogous to existing tradeable CO 2 credits, of $90/tCO 2 can incent 38 Mt of abatement. Aggregation of CO 2 sources enables cost-effective long-distance pipeline transport to distant sequestration sites. Financial incentives under the low-carbon fuel standard in California and recent revisions to existing federal tax credits suggest a substantial near-term opportunity to permanently sequester biogenic CO 2 This financial opportunity could catalyze the growth of carbon capture, transport, and sequestration; improve the lifecycle impacts of conventional biofuels; support development of carbon-negative fuels; and help fulfill the mandates of low-carbon fuel policies across the United States. Copyright © 2018 the Author(s). Published by PNAS.

  10. CO2 geological sequestration: state of art in Italy and abroad

    International Nuclear Information System (INIS)

    Quattrocchi, Fedora; Bencini, Roberto

    2005-01-01

    This paper proposes a wide scenario on the state of art in Italy and abroad of industrial CO 2 geological sequestration, with particular attention to Weyburn Project. Geochemical monitoring techniques are described, mentioning also geophysical monitoring techniques for CO 2 injected into the soil. Critical choices and objections in Italy to a complete use of clean fossil fuels, hydrogen carrier, clean coal technologies: all of these approaches require geological sequestration of CO 2 [it

  11. How sequestration cuts affect primary care physicians and graduate medical education.

    Science.gov (United States)

    Chauhan, Bindiya; Coffin, Janis

    2013-01-01

    On April 1, 2013, sequestration cuts went into effect impacting Medicare physician payments, graduate medical education, and many other healthcare agencies. The cuts range from 2% to 5%, affecting various departments and organizations. There is already a shortage of primary care physicians in general, not including rural or underserved areas, with limited grants for advanced training. The sequestration cuts negatively impact the future of many primary care physicians and hinder the care many Americans will receive over time.

  12. Analysis of ex situ processes of CO2 sequestration. Final report

    International Nuclear Information System (INIS)

    Touze, S.; Bourgeois, F.; Baranger, P.; Durst, P.

    2004-01-01

    The aim of this study is to bring quantitative elements to evaluate the validation of the CO 2 mineral sequestration to limit the greenhouse effect gases. This analysis aims to calculate the CO 2 accounting of the system (internal energy production balance the energy expend) sequestrated CO 2 and produced CO 2 . The first part detailed the possible experimental solutions. Then two carbonation processes, direct and indirect, have been chosen of the analysis. (A.L.B.)

  13. [Estimation of soil carbon sequestration potential in typical steppe of Inner Mongolia and associated uncertainty].

    Science.gov (United States)

    Wang, Wei; Wu, Jian-Guo; Han, Xing-Guo

    2012-01-01

    Based on the measurements in the enclosure and uncontrolled grazing plots in the typical steppe of Xilinguole, Inner Mongolia, this paper studied the soil carbon storage and carbon sequestration in the grasslands dominated by Leymus chinensis, Stipa grandis, and Stipa krylovii, respectively, and estimated the regional scale soil carbon sequestration potential in the heavily degraded grassland after restoration. At local scale, the annual soil carbon sequestration in the three grasslands all decreased with increasing year of enclosure. The soil organic carbon storage was significantly higher in the grasslands dominated by L. chinensis and Stipa grandis than in that dominated by Stipa krylovii, but the latter had much higher soil carbon sequestration potential, because of the greater loss of soil organic carbon during the degradation process due to overgrazing. At regional scale, the soil carbon sequestration potential at the depth of 0-20 cm varied from -0.03 x 10(4) to 3.71 x 10(4) kg C x a(-1), and the total carbon sequestration potential was 12.1 x 10(8) kg C x a(-1). Uncertainty analysis indicated that soil gravel content had less effect on the estimated carbon sequestration potential, but the estimation errors resulted from the spatial interpolation of climate data could be about +/- 4.7 x 10(9) kg C x a(-1). In the future, if the growth season precipitation in this region had an average variation of -3.2 mm x (10 a)(-1), the soil carbon sequestration potential would be de- creased by 1.07 x 10(8) kg C x (10 a)(-1).

  14. Dynamics and climate change mitigation potential of soil organic carbon sequestration.

    Science.gov (United States)

    Sommer, Rolf; Bossio, Deborah

    2014-11-01

    When assessing soil organic carbon (SOC) sequestration and its climate change (CC) mitigation potential at global scale, the dynamic nature of soil carbon storage and interventions to foster it should be taken into account. Firstly, adoption of SOC-sequestration measures will take time, and reasonably such schemes could only be implemented gradually at large-scale. Secondly, if soils are managed as carbon sinks, then SOC will increase only over a limited time, up to the point when a new SOC equilibrium is reached. This paper combines these two processes and predicts potential SOC sequestration dynamics in agricultural land at global scale and the corresponding CC mitigation potential. Assuming that global governments would agree on a worldwide effort to gradually change land use practices towards turning agricultural soils into carbon sinks starting 2014, the projected 87-year (2014-2100) global SOC sequestration potential of agricultural land ranged between 31 and 64 Gt. This is equal to 1.9-3.9% of the SRES-A2 projected 87-year anthropogenic emissions. SOC sequestration would peak 2032-33, at that time reaching 4.3-8.9% of the projected annual SRES-A2 emission. About 30 years later the sequestration rate would have reduced by half. Thus, SOC sequestration is not a C wedge that could contribute increasingly to mitigating CC. Rather, the mitigation potential is limited, contributing very little to solving the climate problem of the coming decades. However, we deliberately did not elaborate on the importance of maintaining or increasing SOC for sustaining soil health, agro-ecosystem functioning and productivity; an issue of global significance that deserves proper consideration irrespectively of any potential additional sequestration of SOC. Copyright © 2014 Elsevier Ltd. All rights reserved.

  15. The United States Department of Energy's Regional Carbon Sequestration Partnerships Program Validation Phase

    Energy Technology Data Exchange (ETDEWEB)

    Litynski, J.T.; Plasynski, S.; McIlvried, H.G.; Mahoney, C.; Srivastava, R.D. [US DOE, Morgantown, WV (United States). National Energy Technology Laboratory

    2008-01-15

    This paper reviews the Validation Phase (Phase II) of the Department of Energy's Regional Carbon Sequestration Partnerships initiative. During the Validation Phase, the seven regional partnerships will put the knowledge learned during the Characterization Phase into practice through field tests that will validate carbon sequestration technologies that are best suited to their respective regions of the country. These tests will verify technologies developed through DOE's core R&D effort and enable implementation of CO{sub 2} sequestration on a large scale, should that become necessary. Pilot projects will have a site-specific focus to test technology; assess formation storage capacity and injectivity; validate and refine existing CO{sub 2} formation models used to determine the transport and fate of CO{sub 2} in the formation; demonstrate the integrity of geologic seals to contain CO{sub 2}; validate monitoring, mitigation, and verification (MMV) technologies; define project costs and compare costs of alternatives; assess potential operational and long-term storage risks; address regulatory requirements; and engage and evaluate public acceptance of sequestration technologies. Field validation tests involving both sequestration in geologic formations and terrestrial sequestration are being developed. The results from the Validation Phase will help to confirm the estimates made during the Characterization Phase and will be used to update the regional atlases and NatCarb.

  16. Integrated mangrove-shrimp cultivation: Potential for blue carbon sequestration.

    Science.gov (United States)

    Ahmed, Nesar; Thompson, Shirley; Glaser, Marion

    2018-05-01

    Globally, shrimp farming has had devastating effects on mangrove forests. However, mangroves are the most carbon-rich forests, with blue carbon (i.e., carbon in coastal and marine ecosystems) emissions seriously augmented due to devastating effects on mangrove forests. Nevertheless, integrated mangrove-shrimp cultivation has emerged as a part of the potential solution to blue carbon emissions. Integrated mangrove-shrimp farming is also known as organic aquaculture if deforested mangrove area does not exceed 50% of the total farm area. Mangrove destruction is not permitted in organic aquaculture and the former mangrove area in parts of the shrimp farm shall be reforested to at least 50% during a period of maximum 5 years according to Naturland organic aquaculture standards. This article reviews integrated mangrove-shrimp cultivation that can help to sequester blue carbon through mangrove restoration, which can be an option for climate change mitigation. However, the adoption of integrated mangrove-shrimp cultivation could face several challenges that need to be addressed in order to realize substantial benefits from blue carbon sequestration.

  17. Enhanced oil recovery & carbon sequestration building on successful experience

    Energy Technology Data Exchange (ETDEWEB)

    Stern, Fred [BEPC (United States)

    2008-07-15

    In this paper it is spoken of the experiences in the capture and sequestration of CO{sub 2} in the companies Basin Electric Power Cooperative (BEPC) and Dakota Gasification Company (DGC); their by-products are mentioned and what these companies are making to control the CO{sub 2} emissions. Their challenges to compress CO{sub 2} are presented and how they have reduced the CO{sub 2} emissions in the DGC of the 2000 to the 2008; how they use CO{sub 2} to enhance the oil recovery and which are their challenges in the CO{sub 2} transport. [Spanish] En esta ponencia se habla de las experiencias en la captura y secuestro de CO{sub 2} en las empresas Basin Electic Power Cooperative (BEPC) y Dakota Gasification Campany (DGC); se mencionan sus subproductos y que estan haciendo estas empresas para controlar las emisiones de CO{sub 2}. Se presentan sus retos para comprimir CO{sub 2} y como han reducido las emisiones de CO{sub 2} en la DGC del 2000 al 2008; como utilizan el CO{sub 2} para mejorar la recuperacion de petroleo y sus cuales son retos en el transporte de CO{sub 2}.

  18. Substantial role of macroalgae in marine carbon sequestration

    KAUST Repository

    Krause-Jensen, Dorte; Duarte, Carlos M.

    2016-01-01

    Vegetated coastal habitats have been identified as important carbon sinks. In contrast to angiosperm-based habitats such as seagrass meadows, salt marshes and mangroves, marine macroalgae have largely been excluded from discussions of marine carbon sinks. Macroalgae are the dominant primary producers in the coastal zone, but they typically do not grow in habitats that are considered to accumulate large stocks of organic carbon. However, the presence of macroalgal carbon in the deep sea and sediments, where it is effectively sequestered from the atmosphere, has been reported. A synthesis of these data suggests that macroalgae could represent an important source of the carbon sequestered in marine sediments and the deep ocean. We propose two main modes for the transport of macroalgae to the deep ocean and sediments: macroalgal material drifting through submarine canyons, and the sinking of negatively buoyant macroalgal detritus. A rough estimate suggests that macroalgae could sequester about 173 TgC yr â '1 (with a range of 61-268 TgC yr â '1) globally. About 90% of this sequestration occurs through export to the deep sea, and the rest through burial in coastal sediments. This estimate exceeds that for carbon sequestered in angiosperm-based coastal habitats.

  19. Vascular Endothelial Growth Factor Sequestration Enhances In Vivo Cartilage Formation

    Directory of Open Access Journals (Sweden)

    Carolina M. Medeiros Da Cunha

    2017-11-01

    Full Text Available Autologous chondrocyte transplantation for cartilage repair still has unsatisfactory clinical outcomes because of inter-donor variability and poor cartilage quality formation. Re-differentiation of monolayer-expanded human chondrocytes is not easy in the absence of potent morphogens. The Vascular Endothelial Growth Factor (VEGF plays a master role in angiogenesis and in negatively regulating cartilage growth by stimulating vascular invasion and ossification. Therefore, we hypothesized that its sole microenvironmental blockade by either VEGF sequestration by soluble VEGF receptor-2 (Flk-1 or by antiangiogenic hyperbranched peptides could improve chondrogenesis of expanded human nasal chondrocytes (NC freshly seeded on collagen scaffolds. Chondrogenesis of several NC donors was assessed either in vitro or ectopically in nude mice. VEGF blockade appeared not to affect NC in vitro differentiation, whereas it efficiently inhibited blood vessel ingrowth in vivo. After 8 weeks, in vivo glycosaminoglycan deposition was approximately two-fold higher when antiangiogenic approaches were used, as compared to the control group. Our data indicates that the inhibition of VEGF signaling, independently of the specific implementation mode, has profound effects on in vivo NC chondrogenesis, even in the absence of chondroinductive signals during prior culture or at the implantation site.

  20. Still needed data for successful deep CO2 sequestration

    International Nuclear Information System (INIS)

    Ulmer, Gene C.

    2013-01-01

    Despite chemical knowledge about CO 2 that extends back centuries, some data bases are still evolving that are needed to predict even the sub-critical CO 2 behavior down the geothermal gradient's P- and T-values which will be encountered in sequestration utilizing deep mines and wells. These needed data include IR-spectral interpretations of CO 2 molecular structure as P and T change; the unraveling of the Joule Thomson coefficient (heating or cooling?) that changes algebraic polarity around 10 6 Pa; more exact equations of state (EOS) that correlate to potential CO 2 polarity changes in molecular structure; newer EOS than those that have currently been derived by templating directly measured data; and focus is needed on the EOS-derived properties, like fugacity. Also, natural analogues like (1) the carbonate stability in metamorphic silicate-carbonation facies and (2) Lake Nyos aqueous geochemistry with concern about the potential redox-equilibria-predicted presence of CO (and graphite), as well as CO 2 . (authors)

  1. Substantial role of macroalgae in marine carbon sequestration

    KAUST Repository

    Krause-Jensen, Dorte

    2016-09-12

    Vegetated coastal habitats have been identified as important carbon sinks. In contrast to angiosperm-based habitats such as seagrass meadows, salt marshes and mangroves, marine macroalgae have largely been excluded from discussions of marine carbon sinks. Macroalgae are the dominant primary producers in the coastal zone, but they typically do not grow in habitats that are considered to accumulate large stocks of organic carbon. However, the presence of macroalgal carbon in the deep sea and sediments, where it is effectively sequestered from the atmosphere, has been reported. A synthesis of these data suggests that macroalgae could represent an important source of the carbon sequestered in marine sediments and the deep ocean. We propose two main modes for the transport of macroalgae to the deep ocean and sediments: macroalgal material drifting through submarine canyons, and the sinking of negatively buoyant macroalgal detritus. A rough estimate suggests that macroalgae could sequester about 173 TgC yr â \\'1 (with a range of 61-268 TgC yr â \\'1) globally. About 90% of this sequestration occurs through export to the deep sea, and the rest through burial in coastal sediments. This estimate exceeds that for carbon sequestered in angiosperm-based coastal habitats.

  2. Ocean Fertilization for Sequestration of Carbon Dioxide from the Atmosphere

    Science.gov (United States)

    Boyd, Philip W.

    The ocean is a major sink for both preindustrial and anthropogenic carbon dioxide. Both physically and biogeochemically driven pumps, termed the solubility and biological pump, respectively Fig.5.1) are responsible for the majority of carbon sequestration in the ocean's interior [1]. The solubility pump relies on ocean circulation - specifically the impact of cooling of the upper ocean at high latitudes both enhances the solubility of carbon dioxide and the density of the waters which sink to great depth (the so-called deepwater formation) and thereby sequester carbon in the form of dissolved inorganic carbon (Fig.5.1). The biological pump is driven by the availability of preformed plant macronutrients such as nitrate or phosphate which are taken up by phytoplankton during photosynthetic carbon fixation. A small but significant proportion of this fixed carbon sinks into the ocean's interior in the form of settling particles, and in order to maintain equilibrium carbon dioxide from the atmosphere is transferred across the air-sea interface into the ocean (the so-called carbon drawdown) thereby decreasing atmospheric carbon dioxide (Fig.5.1).Fig.5.1

  3. Carbon Sequestration in Olivine and Basalt Powder Packed Beds.

    Science.gov (United States)

    Xiong, Wei; Wells, Rachel K; Giammar, Daniel E

    2017-02-21

    Fractures and pores in basalt could provide substantial pore volume and surface area of reactive minerals for carbonate mineral formation in geologic carbon sequestration. In many fractures solute transport will be limited to diffusion, and opposing chemical gradients that form as a result of concentration differences can lead to spatial distribution of silicate mineral dissolution and carbonate mineral precipitation. Glass tubes packed with grains of olivine or basalt with different grain sizes and compositions were used to explore the identity and spatial distribution of carbonate minerals that form in dead-end one-dimensional diffusion-limited zones that are connected to a larger reservoir of water in equilibrium with 100 bar CO 2 at 100 °C. Magnesite formed in experiments with olivine, and Mg- and Ca-bearing siderite formed in experiments with flood basalt. The spatial distribution of carbonates varied between powder packed beds with different powder sizes. Packed beds of basalt powder with large specific surface areas sequestered more carbon per unit basalt mass than powder with low surface area. The spatial location and extent of carbonate mineral formation can influence the overall ability of fractured basalt to sequester carbon.

  4. Nanoscale Chemical Processes Affecting Storage Capacities and Seals during Geologic CO2 Sequestration.

    Science.gov (United States)

    Jun, Young-Shin; Zhang, Lijie; Min, Yujia; Li, Qingyun

    2017-07-18

    Geologic CO 2 sequestration (GCS) is a promising strategy to mitigate anthropogenic CO 2 emission to the atmosphere. Suitable geologic storage sites should have a porous reservoir rock zone where injected CO 2 can displace brine and be stored in pores, and an impermeable zone on top of reservoir rocks to hinder upward movement of buoyant CO 2 . The injection wells (steel casings encased in concrete) pass through these geologic zones and lead CO 2 to the desired zones. In subsurface environments, CO 2 is reactive as both a supercritical (sc) phase and aqueous (aq) species. Its nanoscale chemical reactions with geomedia and wellbores are closely related to the safety and efficiency of CO 2 storage. For example, the injection pressure is determined by the wettability and permeability of geomedia, which can be sensitive to nanoscale mineral-fluid interactions; the sealing safety of the injection sites is affected by the opening and closing of fractures in caprocks and the alteration of wellbore integrity caused by nanoscale chemical reactions; and the time scale for CO 2 mineralization is also largely dependent on the chemical reactivities of the reservoir rocks. Therefore, nanoscale chemical processes can influence the hydrogeological and mechanical properties of geomedia, such as their wettability, permeability, mechanical strength, and fracturing. This Account reviews our group's work on nanoscale chemical reactions and their qualitative impacts on seal integrity and storage capacity at GCS sites from four points of view. First, studies on dissolution of feldspar, an important reservoir rock constituent, and subsequent secondary mineral precipitation are discussed, focusing on the effects of feldspar crystallography, cations, and sulfate anions. Second, interfacial reactions between caprock and brine are introduced using model clay minerals, with focuses on the effects of water chemistries (salinity and organic ligands) and water content on mineral dissolution and

  5. Vegetation Structure Controls Carbon Sequestration Potential in a Savannah Ecosystem of Mt. Kilimanjaro Region

    Science.gov (United States)

    Becker, J. N.; Gutlein, A.; Sierra Cornejo, N.; Ralf, K.; Hertel, D.; Kuzyakov, Y.

    2016-12-01

    The savannah biome is a hotspot for biodiversity and wildlife conservation in Africa and recently got in the focus of research on carbon (C) sequestration. Savanna ecosystems are increasingly pressured by climate and land-use changes, especially around populous areas such as the Mt. Kilimanjaro region. Savanna vegetation consists of grassland with isolated trees and is therefore characterized by high spatial variation and patchiness of canopy cover and aboveground biomass. Both are major regulators for soil ecological properties and soil-atmospheric trace gas exchange (CO2, N2O, CH4), especially in water-limited environments. Our objectives were to determine spatial trends in soil properties and trace-gas fluxes during the dry season and to relate above- and belowground processes and attributes. We chose three trees from each of the two most dominant species (Acacia nilotica and Balanites aegyptiaca) in our research area. For each tree, we selected transects with nine sampling points of the same relative distances to the stem. At each sampling point (0-10 & 10-30 cm depth) we measured soil C and nitrogen (N) storage, microbial biomass C and N, Natural δ13C, soil respiration, available nutrients, pH, cation exchange capacity (CEC) as well as root biomass and -density, soil temperature and soil water content. The tree species had no effect on soil parameters and gas fluxes under the crown. CEC, C and N fractions decreased up to 50% outside the crown-covered area. Tree leaf litter had a far lower C:N ratio than leaf litter of the C4-grass species. δ13C in soil under the crowns shifted about 15% in the direction of tree leaf litter δ13C compared to soil in open area reflecting the tree litter contribution to soil organic matter. The microbial C:N ratio and CO2 efflux were about 30% higher in the open area and strongly dependent on mineral N availability. This indicates N limitation and low C-use efficiency in soil under open grassland. We conclude that the spatial

  6. Homeobox NKX2-3 promotes marginal-zone lymphomagenesis by activating B-cell receptor signalling and shaping lymphocyte dynamics

    Science.gov (United States)

    Robles, Eloy F.; Mena-Varas, Maria; Barrio, Laura; Merino-Cortes, Sara V.; Balogh, Péter; Du, Ming-Qing; Akasaka, Takashi; Parker, Anton; Roa, Sergio; Panizo, Carlos; Martin-Guerrero, Idoia; Siebert, Reiner; Segura, Victor; Agirre, Xabier; Macri-Pellizeri, Laura; Aldaz, Beatriz; Vilas-Zornoza, Amaia; Zhang, Shaowei; Moody, Sarah; Calasanz, Maria Jose; Tousseyn, Thomas; Broccardo, Cyril; Brousset, Pierre; Campos-Sanchez, Elena; Cobaleda, Cesar; Sanchez-Garcia, Isidro; Fernandez-Luna, Jose Luis; Garcia-Muñoz, Ricardo; Pena, Esther; Bellosillo, Beatriz; Salar, Antonio; Baptista, Maria Joao; Hernandez-Rivas, Jesús Maria; Gonzalez, Marcos; Terol, Maria Jose; Climent, Joan; Ferrandez, Antonio; Sagaert, Xavier; Melnick, Ari M.; Prosper, Felipe; Oscier, David G.; Carrasco, Yolanda R.; Dyer, Martin J. S.; Martinez-Climent, Jose A.

    2016-01-01

    NKX2 homeobox family proteins have a role in cancer development. Here we show that NKX2-3 is overexpressed in tumour cells from a subset of patients with marginal-zone lymphomas, but not with other B-cell malignancies. While Nkx2-3-deficient mice exhibit the absence of marginal-zone B cells, transgenic mice with expression of NKX2-3 in B cells show marginal-zone expansion that leads to the development of tumours, faithfully recapitulating the principal clinical and biological features of human marginal-zone lymphomas. NKX2-3 induces B-cell receptor signalling by phosphorylating Lyn/Syk kinases, which in turn activate multiple integrins (LFA-1, VLA-4), adhesion molecules (ICAM-1, MadCAM-1) and the chemokine receptor CXCR4. These molecules enhance migration, polarization and homing of B cells to splenic and extranodal tissues, eventually driving malignant transformation through triggering NF-κB and PI3K-AKT pathways. This study implicates oncogenic NKX2-3 in lymphomagenesis, and provides a valid experimental mouse model for studying the biology and therapy of human marginal-zone B-cell lymphomas. PMID:27297662

  7. A novel mutation in homeobox DNA binding domain of HOXC13 gene underlies pure hair and nail ectodermal dysplasia (ECTD9) in a Pakistani family.

    Science.gov (United States)

    Khan, Anwar Kamal; Muhammad, Noor; Aziz, Abdul; Khan, Sher Alam; Shah, Khadim; Nasir, Abdul; Khan, Muzammil Ahmad; Khan, Saadullah

    2017-04-12

    Pure hair and nail ectodermal dysplasia (PHNED) is a congenital disorder of hair abnormalities and nail dysplasia. Both autosomal recessive and dominant inheritance fashion of PHNED occurs. In literature, to date, five different forms of PHNED have been reported at molecular level, having three genes known and two loci with no gene yet. In this study, a four generations consanguineous family of Pakistani origin with autosomal recessive PHNED was investigated. Affected members exhibited PHNED phenotypes with involvement of complete hair loss and nail dysplasia. To screen for mutation in the genes (HOXC13, KRT74, KRT85), its coding exons and exons-intron boundaries were sequenced. The 3D models of normal and mutated HOXC13 were predicted by using homology modeling. Through investigating the family to known loci, the family was mapped to ectodermal dysplasia 9 (ECTD9) loci with genetic address of 12q13.13. Mutation screening revealed a novel missense mutation (c.929A > C; p.Asn310Thr) in homeobox DNA binding domain of HOXC13 gene in affected members of the family. Due to mutation, loss of hydrogen bonding and difference in potential energy occurs, which may resulting in alteration of protein function. This is the first mutation reported in homeodomain, while 5 th mutation reported in HOXC13 gene causing PHNED.

  8. [Comparative study of expression of homeobox gene Msx-1, Msx-2 mRNA during the hard tissue formation of mouse tooth development].

    Science.gov (United States)

    Wang, Y; Wang, J; Gao, Y

    2001-07-01

    To observe and compare the expression pattern of Msx-1, Msx-2 mRNA during the different stages of hard tissue formation in the first mandibular molar of mouse and investigate the relationship between the two genes. First mandibular molar germs from 1, 3, 7 and 14-days old mouse were separated and reverse transcription-polymerase chain reaction was performed on the total RNA of them using Msx-1, Msx-2 specific primers separately. Expression of both genes were detected during the different stages of hard tissue formation in the mouse first mandibular molars, but there was some interesting differences in the quantitiy between the two genes. Msx-1 transcripts appeared at the 1 day postnatally, and increase through 3 day, 7 day, then maximally expressed at 14 days postnatally; while Msx-2 mRNA was seen and expressed maximally at the 3 days postnatally, then there was a gradual reduction at 7 days, and 14 days postnatally. The homeobox gene Msx-1, Msx-2 may play a role in the events of the hard tissue formation. The complementary expression pattern of them during the specific stage of hard tissue formation indicates that there may be some functional redundancy between them during the biomineralization.

  9. Tlx-1 and Tlx-3 homeobox gene expression in cranial sensory ganglia and hindbrain of the chick embryo: markers of patterned connectivity.

    Science.gov (United States)

    Logan, C; Wingate, R J; McKay, I J; Lumsden, A

    1998-07-15

    Recent evidence suggests that in vertebrates the formation of distinct neuronal cell types is controlled by specific families of homeodomain transcription factors. Furthermore, the expression domains of a number of these genes correlates with functionally integrated neuronal populations. We have isolated two members of the divergent T-cell leukemia translocation (HOX11/Tlx) homeobox gene family from chick, Tlx-1 and Tlx-3, and show that they are expressed in differentiating neurons of both the peripheral and central nervous systems. In the peripheral nervous system, Tlx-1 and Tlx-3 are expressed in overlapping domains within the placodally derived components of a number of cranial sensory ganglia. Tlx-3, unlike Tlx-1, is also expressed in neural crest-derived dorsal root and sympathetic ganglia. In the CNS, both genes are expressed in longitudinal columns of neurons at specific dorsoventral levels of the hindbrain. Each column has distinct anterior and/or posterior limits that respect inter-rhombomeric boundaries. Tlx-3 is also expressed in D2 and D3 neurons of the spinal cord. Tlx-1 and Tlx-3 expression patterns within the peripheral and central nervous systems suggest that Tlx proteins may be involved not only in the differentiation and/or survival of specific neuronal populations but also in the establishment of neuronal circuitry. Furthermore, by analogy with the LIM genes, Tlx family members potentially define sensory columns early within the developing hindbrain in a combinatorial manner.

  10. Smad4-dependent suppressor pituitary homeobox 2 promotes PPP2R2A-mediated inhibition of Akt pathway in pancreatic cancer.

    Science.gov (United States)

    Wang, Qi; Li, Juanjuan; Wu, Wei; Shen, Ruizhe; Jiang, He; Qian, Yuting; Tang, Yanping; Bai, Tingting; Wu, Sheng; Wei, Lumin; Zang, Yi; Zhang, Ji; Wang, Lifu

    2016-03-08

    The importance of Pituitary homeobox 2 (Pitx2) in malignancy remains enigmatic, and Pitx2 has not been previously implicated in pancreatic ductal adenocarcinoma (PDAC). In this study, we performed gene expression profiling of human PDAC tissues and identified Pitx2 as a promising candidate. Pitx2 expression was decreased from 2.6- to 19-fold in human PDAC tissues from microarray units. Immunochemistry staining showed that Pitx2 expression was moderate to intense in normal pancreatic and pancreatic intraepithelial neoplastic lesions, whereas low in human PDAC tissues. The Pitx2 levels correlated with overall patient survival post-operatively in PDAC. Induction of Pitx2 expression partly inhibited the malignant phenotype of PDAC cells. Interestingly, low Pitx2 expression was correlated with Smad4 mutant inactivation, but not with Pitx2 DNA-methylation. Furthermore, Smad4 protein bound to Pitx2 promoter and stimulated Pitx2 expression in PDAC. In addition, Pitx2 protein bound to the promoter of the protein phosphatase 2A regulatory subunit B55α (PPP2R2A) and upregulated PPP2R2A expression, which may activate dephosphorylation of Akt in PDAC. These findings provide new mechanistic insights into Pitx2 as a tumor suppressor in the downstream of Smad4. And Pitx2 protein promotes PPP2R2A expression which may inhibit Akt pathway. Therefore, we propose that the Smad4-Pitx2-PPP2R2A axis, a new signaling pathway, suppresses the pancreatic carcinogenesis.

  11. The LIM and POU homeobox genes ttx-3 and unc-86 act as terminal selectors in distinct cholinergic and serotonergic neuron types.

    Science.gov (United States)

    Zhang, Feifan; Bhattacharya, Abhishek; Nelson, Jessica C; Abe, Namiko; Gordon, Patricia; Lloret-Fernandez, Carla; Maicas, Miren; Flames, Nuria; Mann, Richard S; Colón-Ramos, Daniel A; Hobert, Oliver

    2014-01-01

    Transcription factors that drive neuron type-specific terminal differentiation programs in the developing nervous system are often expressed in several distinct neuronal cell types, but to what extent they have similar or distinct activities in individual neuronal cell types is generally not well explored. We investigate this problem using, as a starting point, the C. elegans LIM homeodomain transcription factor ttx-3, which acts as a terminal selector to drive the terminal differentiation program of the cholinergic AIY interneuron class. Using a panel of different terminal differentiation markers, including neurotransmitter synthesizing enzymes, neurotransmitter receptors and neuropeptides, we show that ttx-3 also controls the terminal differentiation program of two additional, distinct neuron types, namely the cholinergic AIA interneurons and the serotonergic NSM neurons. We show that the type of differentiation program that is controlled by ttx-3 in different neuron types is specified by a distinct set of collaborating transcription factors. One of the collaborating transcription factors is the POU homeobox gene unc-86, which collaborates with ttx-3 to determine the identity of the serotonergic NSM neurons. unc-86 in turn operates independently of ttx-3 in the anterior ganglion where it collaborates with the ARID-type transcription factor cfi-1 to determine the cholinergic identity of the IL2 sensory and URA motor neurons. In conclusion, transcription factors operate as terminal selectors in distinct combinations in different neuron types, defining neuron type-specific identity features.

  12. Potential for iron oxides to control metal releases in CO2 sequestration scenarios

    Science.gov (United States)

    Berger, P.M.; Roy, W.R.

    2011-01-01

    The potential for the release of metals into groundwater following the injection of carbon dioxide (CO2) into the subsurface during carbon sequestration projects remains an open research question. Changing the chemical composition of even the relatively deep formation brines during CO2 injection and storage may be of concern because of the recognized risks associated with the limited potential for leakage of CO2-impacted brine to the surface. Geochemical modeling allows for proactive evaluation of site geochemistry before CO2 injection takes place to predict whether the release of metals from iron oxides may occur in the reservoir. Geochemical modeling can also help evaluate potential changes in shallow aquifers were CO2 leakage to occur near the surface. In this study, we created three batch-reaction models that simulate chemical changes in groundwater resulting from the introduction of CO2 at two carbon sequestration sites operated by the Midwest Geological Sequestration Consortium (MGSC). In each of these models, we input the chemical composition of groundwater samples into React??, and equilibrated them with selected mineral phases and CO 2 at reservoir pressure and temperature. The model then simulated the kinetic reactions with other mineral phases over a period of up to 100 years. For two of the simulations, the water was also at equilibrium with iron oxide surface complexes. The first model simulated a recently completed enhanced oil recovery (EOR) project in south-central Illinois in which the MGSC injected into, and then produced CO2, from a sandstone oil reservoir. The MGSC afterwards periodically measured the brine chemistry from several wells in the reservoir for approximately two years. The sandstone contains a relatively small amount of iron oxide, and the batch simulation for the injection process showed detectable changes in several aqueous species that were attributable to changes in surface complexation sites. After using the batch reaction

  13. National Carbon Sequestration Database and Geographic Information System (NatCarb)

    Energy Technology Data Exchange (ETDEWEB)

    Kenneth Nelson; Timothy Carr

    2009-03-31

    This annual and final report describes the results of the multi-year project entitled 'NATional CARBon Sequestration Database and Geographic Information System (NatCarb)' (http://www.natcarb.org). The original project assembled a consortium of five states (Indiana, Illinois, Kansas, Kentucky and Ohio) in the midcontinent of the United States (MIDCARB) to construct an online distributed Relational Database Management System (RDBMS) and Geographic Information System (GIS) covering aspects of carbon dioxide (CO{sub 2}) geologic sequestration. The NatCarb system built on the technology developed in the initial MIDCARB effort. The NatCarb project linked the GIS information of the Regional Carbon Sequestration Partnerships (RCSPs) into a coordinated regional database system consisting of datasets useful to industry, regulators and the public. The project includes access to national databases and GIS layers maintained by the NatCarb group (e.g., brine geochemistry) and publicly accessible servers (e.g., USGS, and Geography Network) into a single system where data are maintained and enhanced at the local level, but are accessed and assembled through a single Web portal to facilitate query, assembly, analysis and display. This project improves the flow of data across servers and increases the amount and quality of available digital data. The purpose of NatCarb is to provide a national view of the carbon capture and storage potential in the U.S. and Canada. The digital spatial database allows users to estimate the amount of CO{sub 2} emitted by sources (such as power plants, refineries and other fossil-fuel-consuming industries) in relation to geologic formations that can provide safe, secure storage sites over long periods of time. The NatCarb project worked to provide all stakeholders with improved online tools for the display and analysis of CO{sub 2} carbon capture and storage data through a single website portal (http://www.natcarb.org/). While the external

  14. Potential and economics of CO{sub 2} sequestration; Sequestration du CO{sub 2}: faisabilite et cout

    Energy Technology Data Exchange (ETDEWEB)

    Jean-Baptiste, Ph.; Ciais, Ph.; Orr, J. [CEA Saclay, 91 - Gif sur Yvette (France). Direction des Sciences de la Matiere; Ducroux, R. [Centre d' Initiative et de Recherche sur l' Energie et l' Environnement, CIRENE, 91 - Palaiseau (France)

    2001-07-01

    Increasing atmospheric level of greenhouse gases are causing global warming and putting at risk the global climate system. The main anthropogenic greenhouse gas is CO{sub 2}. Some techniques could be used to reduced CO{sub 2} emission and stabilize atmospheric CO{sub 2} concentration, including i) energy savings and energy efficiency, ii) switch to lower carbon content fuels (natural gas) and use energy sources with zero CO{sub 2} emissions such as renewable or nuclear energy, iii) capture and store CO{sub 2} from fossil fuels combustion, and enhance the natural sinks for CO{sub 2} (forests, soils, ocean...). The purpose of this report is to provide an overview of the technology and cost for capture and storage of CO{sub 2} and to review the various options for CO{sub 2} sequestration by enhancing natural carbon sinks. Some of the factors which will influence application, including environmental impact, cost and efficiency, are discussed. Capturing CO{sub 2} and storing it in underground geological reservoirs appears as the best environmentally acceptable option. It can be done with existing technology, however, substantial R and D is needed to improve available technology and to lower the cost. Applicable to large CO{sub 2} emitting industrial facilities such as power plants, cement factories, steel industry, etc., which amount to about 30% of the global anthropic CO{sub 2} emission, it represents a valuable tool in the baffle against global warming. About 50% of the anthropic CO{sub 2} is being naturally absorbed by the biosphere and the ocean. The 'natural assistance' provided by these two large carbon reservoirs to the mitigation of climate change is substantial. The existing natural sinks could be enhanced by deliberate action. Given the known and likely environmental consequences, which could be very damaging indeed, enhancing ocean sinks does not appears as a satisfactory option. In contrast, the promotion of land sinks through demonstrated carbon

  15. Large-scale sequestration of atmospheric carbon via plant roots in natural and agricultural ecosystems: why and how.

    Science.gov (United States)

    Kell, Douglas B

    2012-06-05

    The soil holds twice as much carbon as does the atmosphere, and most soil carbon is derived from recent photosynthesis that takes carbon into root structures and further into below-ground storage via exudates therefrom. Nonetheless, many natural and most agricultural crops have roots that extend only to about 1 m below ground. What determines the lifetime of below-ground C in various forms is not well understood, and understanding these processes is therefore key to optimising them for enhanced C sequestration. Most soils (and especially subsoils) are very far from being saturated with organic carbon, and calculations show that the amounts of C that might further be sequestered (http://dbkgroup.org/carbonsequestration/rootsystem.html) are actually very great. Breeding crops with desirable below-ground C sequestration traits, and exploiting attendant agronomic practices optimised for individual species in their relevant environments, are therefore important goals. These bring additional benefits related to improvements in soil structure and in the usage of other nutrients and water.