THE MULTI-EPOCH NEARBY CLUSTER SURVEY: TYPE Ia SUPERNOVA RATE MEASUREMENT IN z {approx} 0.1 CLUSTERS AND THE LATE-TIME DELAY TIME DISTRIBUTION

Energy Technology Data Exchange (ETDEWEB)

Sand, David J.; Graham, Melissa L. [Las Cumbres Observatory Global Telescope Network, 6740 Cortona Drive, Suite 102, Santa Barbara, CA 93117 (United States); Bildfell, Chris; Pritchet, Chris [Department of Physics and Astronomy, University of Victoria, P.O. Box 3055, STN CSC, Victoria BC V8W 3P6 (Canada); Zaritsky, Dennis; Just, Dennis W.; Herbert-Fort, Stephane [Steward Observatory, University of Arizona, Tucson, AZ 85721 (United States); Hoekstra, Henk [Leiden Observatory, Leiden University, Niels Bohrweg 2, NL-2333 CA Leiden (Netherlands); Sivanandam, Suresh [Dunlap Institute for Astronomy and Astrophysics, 50 St. George Street, Toronto, ON M5S 3H4 (Canada); Foley, Ryan J. [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Mahdavi, Andisheh, E-mail: dsand@lcogt.net [Department of Physics and Astronomy, San Francisco State University, San Francisco, CA 94132 (United States)

2012-02-20

We describe the Multi-Epoch Nearby Cluster Survey, designed to measure the cluster Type Ia supernova (SN Ia) rate in a sample of 57 X-ray selected galaxy clusters, with redshifts of 0.05 < z < 0.15. Utilizing our real-time analysis pipeline, we spectroscopically confirmed twenty-three cluster SNe Ia, four of which were intracluster events. Using our deep Canada-France-Hawaii Telescope/MegaCam imaging, we measured total stellar luminosities in each of our galaxy clusters, and we performed detailed supernova (SN) detection efficiency simulations. Bringing these ingredients together, we measure an overall cluster SN Ia rate within R{sub 200} (1 Mpc) of 0.042{sup +0.012}{sub -0.010}{sup +0.010}{sub -0.008} SNuM (0.049{sup +0.016}{sub -0.014}{sup +0.005}{sub -0.004} SNuM) and an SN Ia rate within red-sequence galaxies of 0.041{sup +0.015}{sub -0.015}{sup +0.005}{sub -0.010} SNuM (0.041{sup +0.019}{sub -0.015}{sup +0.005}{sub -0.004} SNuM). The red-sequence SN Ia rate is consistent with published rates in early-type/elliptical galaxies in the 'field'. Using our red-sequence SN Ia rate, and other cluster SN measurements in early-type galaxies up to z {approx} 1, we derive the late-time (>2 Gyr) delay time distribution (DTD) of SN Ia assuming a cluster early-type galaxy star formation epoch of z{sub f} = 3. Assuming a power-law form for the DTD, {Psi}(t){proportional_to}t{sup s} , we find s = -1.62 {+-} 0.54. This result is consistent with predictions for the double degenerate SN Ia progenitor scenario (s {approx} -1) and is also in line with recent calculations for the double detonation explosion mechanism (s {approx} -2). The most recent calculations of the single degenerate scenario DTD predicts an order-of-magnitude drop-off in SN Ia rate {approx}6-7 Gyr after stellar formation, and the observed cluster rates cannot rule this out.

The evolution of the cluster optical galaxy luminosity function between z = 0.4 and 0.9 in the DAFT/FADA survey

Science.gov (United States)

Martinet, Nicolas; Durret, Florence; Guennou, Loïc; Adami, Christophe; Biviano, Andrea; Ulmer, Melville P.; Clowe, Douglas; Halliday, Claire; Ilbert, Olivier; Márquez, Isabel; Schirmer, Mischa

2015-03-01

Context. There is some disagreement about the abundance of faint galaxies in high-redshift clusters, with contradictory results in the literature arising from studies of the optical galaxy luminosity function (GLF) for small cluster samples. Aims: We compute GLFs for one of the largest medium-to-high-redshift (0.4 ≤ z DAFT/FADA survey in the B,V,R, and I rest-frame bands. We used photometric redshifts computed from BVRIZJ images to constrain galaxy cluster membership. We carried out a detailed estimate of the completeness of our data. We distinguished the red-sequence and blue galaxies using a V - I versus I colour-magnitude diagram. We studied the evolution of these two populations with redshift. We fitted Schechter functions to our stacked GLFs to determine average cluster characteristics. Results: We find that the shapes of our GLFs are similar for the B,V,R, and I bands with a drop at the red GLF faint ends that is more pronounced at high redshift: αred ~ -0.5 at 0.40 ≤ z 0.1 at 0.65 ≤ z < 0.90. The blue GLFs have a steeper faint end (αblue ~ -1.6) than the red GLFs, which appears to be independent of redshift. For the full cluster sample, blue and red GLFs meet at MV = -20, MR = -20.5, and MI = -20.3. A study of how galaxy types evolve with redshift shows that late-type galaxies appear to become early types between z ~ 0.9 and today. Finally, the faint ends of the red GLFs of more massive clusters appear to be richer than less massive clusters, which is more typical of the lower redshift behaviour. Conclusions: Our results indicate that these clusters form at redshifts higher than z = 0.9 from galaxy structures that already have an established red sequence. Late-type galaxies then appear to evolve into early types, enriching the red sequence between this redshift and today. This effect is consistent with the evolution of the faint-end slope of the red sequence and the galaxy type evolution that we find. Finally, faint galaxies accreted from the field

Spectroscopic characterization of galaxy clusters in RCS-1: spectroscopic confirmation, redshift accuracy, and dynamical mass-richness relation

Science.gov (United States)

Gilbank, David G.; Barrientos, L. Felipe; Ellingson, Erica; Blindert, Kris; Yee, H. K. C.; Anguita, T.; Gladders, M. D.; Hall, P. B.; Hertling, G.; Infante, L.; Yan, R.; Carrasco, M.; Garcia-Vergara, Cristina; Dawson, K. S.; Lidman, C.; Morokuma, T.

2018-05-01

We present follow-up spectroscopic observations of galaxy clusters from the first Red-sequence Cluster Survey (RCS-1). This work focuses on two samples, a lower redshift sample of ˜30 clusters ranging in redshift from z ˜ 0.2-0.6 observed with multiobject spectroscopy (MOS) on 4-6.5-m class telescopes and a z ˜ 1 sample of ˜10 clusters 8-m class telescope observations. We examine the detection efficiency and redshift accuracy of the now widely used red-sequence technique for selecting clusters via overdensities of red-sequence galaxies. Using both these data and extended samples including previously published RCS-1 spectroscopy and spectroscopic redshifts from SDSS, we find that the red-sequence redshift using simple two-filter cluster photometric redshifts is accurate to σz ≈ 0.035(1 + z) in RCS-1. This accuracy can potentially be improved with better survey photometric calibration. For the lower redshift sample, ˜5 per cent of clusters show some (minor) contamination from secondary systems with the same red-sequence intruding into the measurement aperture of the original cluster. At z ˜ 1, the rate rises to ˜20 per cent. Approximately ten per cent of projections are expected to be serious, where the two components contribute significant numbers of their red-sequence galaxies to another cluster. Finally, we present a preliminary study of the mass-richness calibration using velocity dispersions to probe the dynamical masses of the clusters. We find a relation broadly consistent with that seen in the local universe from the WINGS sample at z ˜ 0.05.

redMaPPer. I. Algorithm and SDSS DR8 catalog

Energy Technology Data Exchange (ETDEWEB)

Rykoff, E. S.; Rozo, E.; Reddick, R.; Wechsler, R. H. [SLAC National Accelerator Laboratory, Menlo Park, CA 94025 (United States); Busha, M. T. [Institute for Theoretical Physics, University of Zürich, 8057 Zürich (Switzerland); Cunha, C. E. [Kavli Institute for Particle Astrophysics and Cosmology, Stanford University, Palo Alto, CA 94305 (United States); Finoguenov, A. [Department of Physics, University of Helsinki, FI-00014 Helsinki (Finland); Evrard, A.; Koester, B. P. [Physics Department, University of Michigan, Ann Arbor, MI 48109 (United States); Hao, J.; Nord, B. [Center for Particle Astrophysics, Fermi National Accelerator Laboratory, Batavia, IL 60510 (United States); Leauthaud, A. [Kavli Institute for the Physics and Mathematics of the Universe, University of Tokyo, Kashiwa 277-8583 (Japan); Pierre, M.; Sadibekova, T. [Service d' Astrophysique, CEA Saclay, F-91191 Gif sur Yvette Cedex (France); Sheldon, E. S. [Brookhaven National Laboratory, Upton, NY 11973 (United States)

2014-04-20

We describe redMaPPer, a new red sequence cluster finder specifically designed to make optimal use of ongoing and near-future large photometric surveys. The algorithm has multiple attractive features: (1) it can iteratively self-train the red sequence model based on a minimal spectroscopic training sample, an important feature for high-redshift surveys. (2) It can handle complex masks with varying depth. (3) It produces cluster-appropriate random points to enable large-scale structure studies. (4) All clusters are assigned a full redshift probability distribution P(z). (5) Similarly, clusters can have multiple candidate central galaxies, each with corresponding centering probabilities. (6) The algorithm is parallel and numerically efficient: it can run a Dark Energy Survey-like catalog in ∼500 CPU hours. (7) The algorithm exhibits excellent photometric redshift performance, the richness estimates are tightly correlated with external mass proxies, and the completeness and purity of the corresponding catalogs are superb. We apply the redMaPPer algorithm to ∼10, 000 deg{sup 2} of SDSS DR8 data and present the resulting catalog of ∼25,000 clusters over the redshift range z in [0.08, 0.55]. The redMaPPer photometric redshifts are nearly Gaussian, with a scatter σ {sub z} ≈ 0.006 at z ≈ 0.1, increasing to σ {sub z} ≈ 0.02 at z ≈ 0.5 due to increased photometric noise near the survey limit. The median value for |Δz|/(1 + z) for the full sample is 0.006. The incidence of projection effects is low (≤5%). Detailed performance comparisons of the redMaPPer DR8 cluster catalog to X-ray and Sunyaev-Zel'dovich catalogs are presented in a companion paper.

Weak-lensing calibration of a stellar mass-based mass proxy for redMaPPer and Voronoi Tessellation clusters in SDSS Stripe 82

Science.gov (United States)

Pereira, Maria E. S.; Soares-Santos, Marcelle; Makler, Martin; Annis, James; Lin, Huan; Palmese, Antonella; Vitorelli, André Z.; Welch, Brian; Caminha, Gabriel B.; Erben, Thomas; Moraes, Bruno; Shan, Huanyuan

2018-02-01

We present the first weak lensing calibration of μ⋆, a new galaxy cluster mass proxy corresponding to the total stellar mass of red and blue members, in two cluster samples selected from the SDSS Stripe 82 data: 230 red-sequence Matched-filter Probabilistic Percolation (redMaPPer) clusters at redshift 0.1 ≤ z proxy for VT clusters. Catalogues including μ⋆ measurements will enable its use in studies of galaxy evolution in clusters and cluster cosmology.

THE MID-INFRARED AND NEAR-ULTRAVIOLET EXCESS EMISSIONS OF QUIESCENT GALAXIES ON THE RED SEQUENCE

International Nuclear Information System (INIS)

Ko, Jongwan; Lee, Jong Chul; Hwang, Ho Seong; Sohn, Young-Jong

2013-01-01

We study the mid-infrared (IR) and near-ultraviolet (UV) excess emissions of spectroscopically selected quiescent galaxies on the optical red sequence. We use the Wide-field Infrared Survey Explorer mid-IR and Galaxy Evolution Explorer near-UV data for a spectroscopic sample of galaxies in the Sloan Digital Sky Survey Data Release 7 to study the possible connection between quiescent red-sequence galaxies with and without mid-IR/near-UV excess. Among 648 12 μm detected quiescent red-sequence galaxies without Hα emission, 26% and 55% show near-UV and mid-IR excess emissions, respectively. When we consider only bright (M r n 4000 than those without mid-IR and near-UV excess emissions. We also find that mid-IR weighted mean stellar ages of quiescent red-sequence galaxies with mid-IR excess are larger than those with near-UV excess, and smaller than those without mid-IR and near-UV excess. The environmental dependence of the fraction of quiescent red-sequence galaxies with mid-IR and near-UV excess seems strong even though the trends of quiescent red-sequence galaxies with near-UV excess differ from those with mid-IR excess. These results indicate that the recent star formation traced by near-UV (∼< 1 Gyr) and mid-IR (∼< 2 Gyr) excess is not negligible among nearby, quiescent, red, early-type galaxies. We suggest a possible evolutionary scenario of quiescent red-sequence galaxies from quiescent red-sequence galaxies with near-UV excess to those with mid-IR excess to those without near-UV and mid-IR excess.

New VVV Survey Globular Cluster Candidates in the Milky Way Bulge

Energy Technology Data Exchange (ETDEWEB)

Minniti, Dante; Gómez, Matías [Departamento de Física, Facultad de Ciencias Exactas, Universidad Andrés Bello, Av. Fernandez Concha 700, Las Condes, Santiago (Chile); Geisler, Douglas; Fernández-Trincado, Jose G. [Departamento de Astronomía, Casilla 160-C, Universidad de Concepción, Casilla 160-C, Concepción (Chile); Alonso-García, Javier; Beamín, Juan Carlos; Borissova, Jura; Catelan, Marcio; Ramos, Rodrigo Contreras; Kurtev, Radostin; Pullen, Joyce [Instituto Milenio de Astrofísica, Santiago (Chile); Palma, Tali; Clariá, Juan J. [Observatorio Astronómico, Universidad Nacional de Córdoba, Laprida 854, Córdoba (Argentina); Cohen, Roger E. [Space Telescope Science Institute, 2700 San Martin Drive, Baltimore (United States); Dias, Bruno [European Southern Observatory, Alonso de Cordova 3107, Vitacura, Santiago (Chile); Hempel, Maren [Pontificia Universidad Católica de Chile, Instituto de Astrofísica, Av. Vicuña Mackenna 4860, Santiago (Chile); Ivanov, Valentin D. [European Southern Observatory, Karl-Schwarszchild-Str. 2, D-85748 Garching bei Muenchen (Germany); Lucas, Phillip W. [Dept. of Astronomy, University of Hertfordshire, Hertfordshire (United Kingdom); Moni-Bidin, Christian; Alegría, Sebastian Ramírez [Instituto de Astronomía, Universidad Católica del Norte, Antofagasta (Chile); and others

2017-11-10

It is likely that a number of Galactic globular clusters remain to be discovered, especially toward the Galactic bulge. High stellar density combined with high and differential interstellar reddening are the two major problems for finding globular clusters located toward the bulge. We use the deep near-IR photometry of the VISTA Variables in the Vía Láctea (VVV) Survey to search for globular clusters projected toward the Galactic bulge, and hereby report the discovery of 22 new candidate globular clusters. These objects, detected as high density regions in our maps of bulge red giants, are confirmed as globular cluster candidates by their color–magnitude diagrams. We provide their coordinates as well as their near-IR color–magnitude diagrams, from which some basic parameters are derived, such as reddenings and heliocentric distances. The color–magnitude diagrams reveal well defined red giant branches in all cases, often including a prominent red clump. The new globular cluster candidates exhibit a variety of extinctions (0.06 < A {sub Ks} < 2.77) and distances (5.3 < D < 9.5 kpc). We also classify the globular cluster candidates into 10 metal-poor and 12 metal-rich clusters, based on the comparison of their color–magnitude diagrams with those of known globular clusters also observed by the VVV Survey. Finally, we argue that the census for Galactic globular clusters still remains incomplete, and that many more candidate globular clusters (particularly the low luminosity ones) await to be found and studied in detail in the central regions of the Milky Way.

The Serratia gene cluster encoding biosynthesis of the red antibiotic, prodigiosin, shows species- and strain-dependent genome context variation

DEFF Research Database (Denmark)

Harris, Abigail K P; Williamson, Neil R; Slater, Holly

2004-01-01

The prodigiosin biosynthesis gene cluster (pig cluster) from two strains of Serratia (S. marcescens ATCC 274 and Serratia sp. ATCC 39006) has been cloned, sequenced and expressed in heterologous hosts. Sequence analysis of the respective pig clusters revealed 14 ORFs in S. marcescens ATCC 274...... and 15 ORFs in Serratia sp. ATCC 39006. In each Serratia species, predicted gene products showed similarity to polyketide synthases (PKSs), non-ribosomal peptide synthases (NRPSs) and the Red proteins of Streptomyces coelicolor A3(2). Comparisons between the two Serratia pig clusters and the red cluster...... from Str. coelicolor A3(2) revealed some important differences. A modified scheme for the biosynthesis of prodigiosin, based on the pathway recently suggested for the synthesis of undecylprodigiosin, is proposed. The distribution of the pig cluster within several Serratia sp. isolates is demonstrated...

POPULATION PARAMETERS OF INTERMEDIATE-AGE STAR CLUSTERS IN THE LARGE MAGELLANIC CLOUD. II. NEW INSIGHTS FROM EXTENDED MAIN-SEQUENCE TURNOFFS IN SEVEN STAR CLUSTERS

International Nuclear Information System (INIS)

Goudfrooij, Paul; Kozhurina-Platais, Vera; Puzia, Thomas H.; Chandar, Rupali

2011-01-01

We discuss new photometry from high-resolution images of seven intermediate-age (1-2 Gyr) star clusters in the Large Magellanic Cloud taken with the Advanced Camera for Surveys on board the Hubble Space Telescope. We fit color-magnitude diagrams (CMDs) with several different sets of theoretical isochrones and determine systematic uncertainties for population parameters when derived using any one set of isochrones. The cluster CMDs show several interesting features, including extended main-sequence turnoff (MSTO) regions, narrow red giant branches, and clear sequences of unresolved binary stars. We show that the extended MSTOs are not caused by photometric uncertainties, contamination by field stars, or the presence of binary stars. Enhanced helium abundances in a fraction of cluster stars are also ruled out as the reason for the extended MSTOs. Quantitative comparisons with simulations indicate that the MSTO regions are better described by a spread in ages than by a bimodal age distribution, although we cannot formally rule out the latter for the three lowest-mass clusters in our sample (which have masses lower than ∼3 x 10 4 M sun ). This conclusion differs from that of some previous works which suggested that the age distribution in massive clusters in our sample is bimodal. This suggests that any secondary star formation occurred in an extended fashion rather than through short bursts. We discuss these results in the context of the nature of multiple stellar populations in star clusters.

Effects of main-sequence mass loss on the turnoff ages of globular clusters

International Nuclear Information System (INIS)

Guzik, J.A.

1989-01-01

Willson, Bowen, and Struck-Marcell have proposed that globular cluster main-sequence turnoff ages can be reconciled with the lower ages of the Galaxy and universe deduced from other methods by incorporating an epoch of early main-sequence mass-loss by stars of spectral types A through early-F. The proposed mass loss is pulsation-driven, and facilitated by rapid rotation. This paper presents stellar evolution calculations of Pop. II (Z = 0.001) mass-losing stars of initial mass 0.8 to 1.6 M circle dot , with exponentially-decreasing mass loss rates of e-folding times 0.5 to 2.0 Gyr, evolving to a final mass of 0.7 M circle dot . The calculations indicate that a globular cluster with apparent turnoff age 18 Gyr could have an actual age as low as ∼12 Gyr. Observational implications that may help to verify the hypothesis, e.g. low C/N abundance ratios among red giants following first dredge-up, blue stragglers, red giant deficiencies, and signatures in cluster mass/luminosity functions, are also discussed.25 refs., 4 figs., 3 tabs

Double blue straggler sequences in globular clusters: The case of NGC 362

International Nuclear Information System (INIS)

Dalessandro, E.; Ferraro, F. R.; Massari, D.; Lanzoni, B.; Miocchi, P.; Mucciarelli, A.; Lovisi, L.; Beccari, G.; Bellini, A.; Sills, A.; Sigurdsson, S.

2013-01-01

We used high-quality images acquired with the Wide Field Camera 3 on board the Hubble Space Telescope to probe the blue straggler star (BSS) population of the galactic globular cluster NGC 362. We have found two distinct sequences of BSSs: this is the second case, after M30, where such a feature has been observed. Indeed, the BSS location, their extension in magnitude and color, and their radial distribution within the cluster nicely resemble those observed in M30, thus suggesting that the same interpretative scenario can be applied: the red BSS sub-population is generated by mass-transfer binaries, the blue one by collisions. The discovery of four new W UMa stars, three of which lie along the red BSS sequence, further supports this scenario. We also found that the inner portion of the density profile deviates from a King model and is well reproduced by either a mild power law (α ∼ –0.2) or a double King profile. This feature supports the hypothesis that the cluster is currently undergoing the core-collapse phase. Moreover, the BSS radial distribution shows a central peak and monotonically decreases outward without any evidence of an external rising branch. This evidence is a further indication of the advanced dynamical age of NGC 362; in fact, together with M30, NGC 362 belongs to the family of dynamically old clusters (Family III) in the 'dynamical clock' classification proposed by Ferraro et al. The observational evidence presented here strengthens the possible connection between the existence of a double BSS sequence and a quite advanced dynamical status of the parent cluster.

THE CLUSTERING OF GALAXIES IN THE SDSS-III BARYON OSCILLATION SPECTROSCOPIC SURVEY: LUMINOSITY AND COLOR DEPENDENCE AND REDSHIFT EVOLUTION

Energy Technology Data Exchange (ETDEWEB)

Guo Hong; Zehavi, Idit [Department of Astronomy, Case Western Reserve University, OH 44106 (United States); Zheng Zheng [Department of Physics and Astronomy, University of Utah, UT 84112 (United States); Weinberg, David H. [Department of Astronomy and CCAPP, Ohio State University, Columbus, OH 43210 (United States); Berlind, Andreas A. [Department of Physics and Astronomy, Vanderbilt University, Nashville, TN 37235 (United States); Blanton, Michael [Center for Cosmology and Particle Physics, New York University, New York, NY 10003 (United States); Chen Yanmei [Department of Astronomy, Nanjing University, Nanjing 210093 (China); Eisenstein, Daniel J.; McBride, Cameron K. [Harvard-Smithsonian Center for Astrophysics, 60 Garden St., Cambridge, MA 02138 (United States); Ho, Shirley; Ross, Nicholas P. [Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, CA 94720 (United States); Kazin, Eyal [Center for Astrophysics and Supercomputing, Swinburne University of Technology, P.O. Box 218, Hawthorn, Victoria 3122 (Australia); Manera, Marc; Maraston, Claudia; Percival, Will J.; Ross, Ashley J.; Samushia, Lado [Institute of Cosmology and Gravitation, Dennis Sciama Building, University of Portsmouth, Portsmouth, PO1 3FX (United Kingdom); Nuza, Sebastian E. [Leibniz-Institut fuer Astrophysik Potsdam (AIP), An der Sternwarte 16, D-14482 Potsdam (Germany); Padmanabhan, Nikhil; Parejko, John K. [Department of Physics, Yale University, 260 Whitney Ave, New Haven, CT 06520 (United States); and others

2013-04-20

We measure the luminosity and color dependence and the redshift evolution of galaxy clustering in the Sloan Digital Sky Survey-III Baryon Oscillation Spectroscopic Survey Ninth Data Release. We focus on the projected two-point correlation function (2PCF) of subsets of its CMASS sample, which includes about 260,000 galaxies over {approx}3300 deg{sup 2} in the redshift range 0.43 < z < 0.7. To minimize the selection effect on galaxy clustering, we construct well-defined luminosity and color subsamples by carefully accounting for the CMASS galaxy selection cuts. The 2PCF of the whole CMASS sample, if approximated by a power-law, has a correlation length of r{sub 0} = 7.93 {+-} 0.06 h {sup -1} Mpc and an index of {gamma} = 1.85 {+-} 0.01. Clear dependences on galaxy luminosity and color are found for the projected 2PCF in all redshift bins, with more luminous and redder galaxies generally exhibiting stronger clustering and steeper 2PCF. The color dependence is also clearly seen for galaxies within the red sequence, consistent with the behavior of SDSS-II main sample galaxies at lower redshifts. At a given luminosity (k + e corrected), no significant evolution of the projected 2PCFs with redshift is detected for red sequence galaxies. We also construct galaxy samples of fixed number density at different redshifts, using redshift-dependent magnitude thresholds. The clustering of these galaxies in the CMASS redshift range is found to be consistent with that predicted by passive evolution. Our measurements of the luminosity and color dependence and redshift evolution of galaxy clustering will allow for detailed modeling of the relation between galaxies and dark matter halos and new constraints on galaxy formation and evolution.

The weak lensing analysis of the CFHTLS and NGVS RedGOLD galaxy clusters

Science.gov (United States)

Parroni, C.; Mei, S.; Erben, T.; Van Waerbeke, L.; Raichoor, A.; Ford, J.; Licitra, R.; Meneghetti, M.; Hildebrandt, H.; Miller, L.; Côté, P.; Covone, G.; Cuillandre, J.-C.; Duc, P.-A.; Ferrarese, L.; Gwyn, S. D. J.; Puzia, T. H.

2017-12-01

An accurate estimation of galaxy cluster masses is essential for their use in cosmological and astrophysical studies. We studied the accuracy of the optical richness obtained by our RedGOLD cluster detection algorithm tep{licitra2016a, licitra2016b} as a mass proxy, using weak lensing and X-ray mass measurements. We measured stacked weak lensing cluster masses for a sample of 1323 galaxy clusters in the Canada-France-Hawaii Telescope Legacy Survey W1 and the Next Generation Virgo Cluster Survey at 0.2z<0.5, in the optical richness range 10-70. We tested different weak lensing mass models that account for miscentering, non-weak shear, the two-halo term, the contribution of the Brightest Cluster Galaxy, and the intrinsic scatter in the mass-richness relation. We calculated the coefficients of the mass-richness relation, and of the scaling relations between the lensing mass and X-ray mass proxies.

Science from a glimpse: Hubble SNAPshot observations of massive galaxy clusters

Science.gov (United States)

Repp, A.; Ebeling, H.

2018-06-01

Hubble Space Telescope SNAPshot surveys of 86 X-ray selected galaxy clusters at 0.3 0.3. Examining the evolution of the slope of the cluster red sequence, we observe at best a slight decrease with redshift, indicating minimal age contribution since z ˜ 1. Congruent to previous studies' findings, we note that the two BCGs which are significantly bluer (≥5σ) than their clusters' red sequences reside in relaxed clusters and exhibit pronounced internal structure. Thanks to our targets' high X-ray luminosity, the subset of our sample observed with Chandra adds valuable leverage to the X-ray luminosity-optical richness relation, which, albeit with substantial scatter, is now clearly established from groups to extremely massive clusters of galaxies. We conclude that SNAPshot observations of MACS clusters stand to continue to play a vital pathfinder role for astrophysical investigations across the entire electromagnetic spectrum.

A PARAMETERIZED GALAXY CATALOG SIMULATOR FOR TESTING CLUSTER FINDING, MASS ESTIMATION, AND PHOTOMETRIC REDSHIFT ESTIMATION IN OPTICAL AND NEAR-INFRARED SURVEYS

International Nuclear Information System (INIS)

Song, Jeeseon; Mohr, Joseph J.; Barkhouse, Wayne A.; Rude, Cody; Warren, Michael S.; Dolag, Klaus

2012-01-01

We present a galaxy catalog simulator that converts N-body simulations with halo and subhalo catalogs into mock, multiband photometric catalogs. The simulator assigns galaxy properties to each subhalo in a way that reproduces the observed cluster galaxy halo occupation distribution, the radial and mass-dependent variation in fractions of blue galaxies, the luminosity functions in the cluster and the field, and the color-magnitude relation in clusters. Moreover, the evolution of these parameters is tuned to match existing observational constraints. Parameterizing an ensemble of cluster galaxy properties enables us to create mock catalogs with variations in those properties, which in turn allows us to quantify the sensitivity of cluster finding to current observational uncertainties in these properties. Field galaxies are sampled from existing multiband photometric surveys of similar depth. We present an application of the catalog simulator to characterize the selection function and contamination of a galaxy cluster finder that utilizes the cluster red sequence together with galaxy clustering on the sky. We estimate systematic uncertainties in the selection to be at the ≤15% level with current observational constraints on cluster galaxy populations and their evolution. We find the contamination in this cluster finder to be ∼35% to redshift z ∼ 0.6. In addition, we use the mock galaxy catalogs to test the optical mass indicator B gc and a red-sequence redshift estimator. We measure the intrinsic scatter of the B gc -mass relation to be approximately log normal with σ log10M ∼0.25 and we demonstrate photometric redshift accuracies for massive clusters at the ∼3% level out to z ∼ 0.7.

Red Misfits in the Sloan Digital Sky Survey: properties of star-forming red galaxies

Science.gov (United States)

Evans, Fraser A.; Parker, Laura C.; Roberts, Ian D.

2018-06-01

We study Red Misfits, a population of red, star-forming galaxies in the local Universe. We classify galaxies based on inclination-corrected optical colours and specific star formation rates derived from the Sloan Digital Sky Survey Data Release 7. Although the majority of blue galaxies are star-forming and most red galaxies exhibit little to no ongoing star formation, a small but significant population of galaxies (˜11 per cent at all stellar masses) are classified as red in colour yet actively star-forming. We explore a number of properties of these galaxies and demonstrate that Red Misfits are not simply dusty or highly inclined blue cloud galaxies or quiescent red galaxies with poorly constrained star formation. The proportion of Red Misfits is nearly independent of environment, and this population exhibits both intermediate morphologies and an enhanced likelihood of hosting an active galactic nucleus. We conclude that Red Misfits are a transition population, gradually quenching on their way to the red sequence and this quenching is dominated by internal processes rather than environmentally driven processes. We discuss the connection between Red Misfits and other transition galaxy populations, namely S0s, red spirals, and green valley galaxies.

Insights into Korean red fox (Vulpes vulpes) based on mitochondrial cytochrome b sequence variation in East Asia.

Science.gov (United States)

Yu, Jeong-Nam; Han, Sang-Hoon; Kim, Bang-Hwan; Kryukov, Alexey P; Kim, Soonok; Lee, Byoung-Yoon; Kwak, Myounghai

2012-11-01

The red fox (Vulpes vulpes) is the most widely distributed terrestrial carnivore in the world, occurring throughout most of North America, Europe, Asia, and North Africa. In South Korea, however, this species has been drastically reduced due to habitat loss and poaching. Consequently, it is classified as an endangered species in Korea. As a first step of a planned red fox restoration project, preserved red fox museum specimens were used to determine the genetic status of red foxes that had previously inhabited South Korea against red foxes from neighboring countries. Total eighty three mtDNA cytochrome b sequences, including 22 newly obtained East Asian red fox sequences and worldwide red fox sequences from NCBI, were clustered into three clades (i.e., I, II, and III) based on haplotype network and neighbor-joining trees. The mean genetic distance between clades was 2.0%. Clade III contained South Korean and other East Asian samples in addition to Eurasian and North Pacific individuals. In clade III, South Korean individuals were separated into two lineages of Eurasian and North Pacific groups, showing unclear phylogeographic structuring and admixture. This suggests that South Korean red fox populations may have been composed of individuals from these two different genetic lineages.

Defining objective clusters for rabies virus sequences using affinity propagation clustering.

Directory of Open Access Journals (Sweden)

Susanne Fischer

2018-01-01

Full Text Available Rabies is caused by lyssaviruses, and is one of the oldest known zoonoses. In recent years, more than 21,000 nucleotide sequences of rabies viruses (RABV, from the prototype species rabies lyssavirus, have been deposited in public databases. Subsequent phylogenetic analyses in combination with metadata suggest geographic distributions of RABV. However, these analyses somewhat experience technical difficulties in defining verifiable criteria for cluster allocations in phylogenetic trees inviting for a more rational approach. Therefore, we applied a relatively new mathematical clustering algorythm named 'affinity propagation clustering' (AP to propose a standardized sub-species classification utilizing full-genome RABV sequences. Because AP has the advantage that it is computationally fast and works for any meaningful measure of similarity between data samples, it has previously been applied successfully in bioinformatics, for analysis of microarray and gene expression data, however, cluster analysis of sequences is still in its infancy. Existing (516 and original (46 full genome RABV sequences were used to demonstrate the application of AP for RABV clustering. On a global scale, AP proposed four clusters, i.e. New World cluster, Arctic/Arctic-like, Cosmopolitan, and Asian as previously assigned by phylogenetic studies. By combining AP with established phylogenetic analyses, it is possible to resolve phylogenetic relationships between verifiably determined clusters and sequences. This workflow will be useful in confirming cluster distributions in a uniform transparent manner, not only for RABV, but also for other comparative sequence analyses.

Neutron star/red giant encounters in globular clusters

International Nuclear Information System (INIS)

Bailyn, C.D.

1988-01-01

The author presents a simple expression for the amount by which xsub(crit) is diminished as a star evolves xsub(crit) Rsub(crit)/R*, where Rsub(crit) is the maximum distance of closest approach between two stars for which the tidal energy is sufficient to bind the system, and R* is the radius of the star on which tides are being raised. Also it is concluded that tidal capture of giants by neutron stars resulting in binary systems is unlikely in globular clusters. However, collisions between neutron stars and red giants, or an alternative process involving tidal capture of a main-sequence star into an initially detached binary system, may result either in rapidly rotating neutron stars or in white dwarf/neutron star binaries. (author)

Massive open star clusters using the VVV survey. II. Discovery of six clusters with Wolf-Rayet stars

Science.gov (United States)

Chené, A.-N.; Borissova, J.; Bonatto, C.; Majaess, D. J.; Baume, G.; Clarke, J. R. A.; Kurtev, R.; Schnurr, O.; Bouret, J.-C.; Catelan, M.; Emerson, J. P.; Feinstein, C.; Geisler, D.; de Grijs, R.; Hervé, A.; Ivanov, V. D.; Kumar, M. S. N.; Lucas, P.; Mahy, L.; Martins, F.; Mauro, F.; Minniti, D.; Moni Bidin, C.

2013-01-01

Context. The ESO Public Survey "VISTA Variables in the Vía Láctea" (VVV) provides deep multi-epoch infrared observations for an unprecedented 562 sq. degrees of the Galactic bulge, and adjacent regions of the disk. Nearly 150 new open clusters and cluster candidates have been discovered in this survey. Aims: This is the second in a series of papers about young, massive open clusters observed using the VVV survey. We present the first study of six recently discovered clusters. These clusters contain at least one newly discovered Wolf-Rayet (WR) star. Methods: Following the methodology presented in the first paper of the series, wide-field, deep JHKs VVV observations, combined with new infrared spectroscopy, are employed to constrain fundamental parameters for a subset of clusters. Results: We find that the six studied stellar groups are real young (2-7 Myr) and massive (between 0.8 and 2.2 × 103 M⊙) clusters. They are highly obscured (AV ~ 5-24 mag) and compact (1-2 pc). In addition to WR stars, two of the six clusters also contain at least one red supergiant star, and one of these two clusters also contains a blue supergiant. We claim the discovery of 8 new WR stars, and 3 stars showing WR-like emission lines which could be classified WR or OIf. Preliminary analysis provides initial masses of ~30-50 M⊙ for the WR stars. Finally, we discuss the spiral structure of the Galaxy using the six new clusters as tracers, together with the previously studied VVV clusters. Based on observations with ISAAC, VLT, ESO (programme 087.D-0341A), New Technology Telescope at ESO's La Silla Observatory (programme 087.D-0490A) and with the Clay telescope at the Las Campanas Observatory (programme CN2011A-086). Also based on data from the VVV survey (programme 172.B-2002).

The VMC survey. XI. Radial stellar population gradients in the galactic globular cluster 47 Tucanae

Energy Technology Data Exchange (ETDEWEB)

Li, Chengyuan; De Grijs, Richard [Kavli Institute for Astronomy and Astrophysics, Peking University, Yi He Yuan Lu 5, Hai Dian District, Beijing 100871 (China); Deng, Licai [Key Laboratory for Optical Astronomy, National Astronomical Observatories, Chinese Academy of Sciences, 20A Datun Road, Chaoyang District, Beijing 100012 (China); Rubele, Stefano; Girardi, Leo; Gullieuszik, Marco [INAF-Osservatorio Astronomico di Padova, vicolo dell' Osservatorio 5, I-35122 Padova (Italy); Wang, Chuchu [Department of Astronomy, Peking University, Yi He Yuan Lu 5, Hai Dian District, Beijing 100871 (China); Bekki, Kenji; For, Bi-Qing [ICRAR M468, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009 (Australia); Cioni, Maria-Rosa L. [Department of Physics, Astronomy, and Mathematics, University of Hertfordshire, Hatfield AL10 9AB (United Kingdom); Clementini, Gisella [INAF-Osservatorio Astronomico di Bologna, Via Ranzani 1, I-40127 Bologna (Italy); Emerson, Jim [Astronomy Unit, School of Physics and Astronomy, Queen Mary University of London, Mile End Road, London E1 4NS (United Kingdom); Groenewegen, Martin A. T. [Royal Observatory of Belgium, Ringlaan 3, 1180 Ukkel (Belgium); Guandalini, Roald [Instituut voor Sterrenkunde, KU Leuven, Celestijnenlaan 200D 2401, 3001 Leuven (Belgium); Marconi, Marcella; Ripepi, Vincenzo [INAF-Osservatorio Astronomico di Capodimonte, via Moiariello 16, I-80131 Naples (Italy); Piatti, Andrés E. [Observatorio Astrońomico, Universidad Nacional de Córdoba, Laprida 854, 5000 Córdoba (Argentina); Van Loon, Jacco Th., E-mail: joshuali@pku.edu.cn, E-mail: grijs@pku.edu.cn [Astrophysics Group, Lennard-Jones Laboratories, Keele University, Staffordshire ST5 5BG (United Kingdom)

2014-07-20

We present a deep near-infrared color-magnitude diagram of the Galactic globular cluster 47 Tucanae, obtained with the Visible and Infrared Survey Telescope for Astronomy (VISTA) as part of the VISTA near-infrared Y, J, K{sub s} survey of the Magellanic System (VMC). The cluster stars comprising both the subgiant and red giant branches exhibit apparent, continuous variations in color-magnitude space as a function of radius. Subgiant branch stars at larger radii are systematically brighter than their counterparts closer to the cluster core; similarly, red-giant-branch stars in the cluster's periphery are bluer than their more centrally located cousins. The observations can very well be described by adopting an age spread of ∼0.5 Gyr as well as radial gradients in both the cluster's helium abundance (Y) and metallicity (Z), which change gradually from (Y = 0.28, Z = 0.005) in the cluster core to (Y = 0.25, Z = 0.003) in its periphery. We conclude that the cluster's inner regions host a significant fraction of second-generation stars, which decreases with increasing radius; the stellar population in the 47 Tuc periphery is well approximated by a simple stellar population.

Construction and application of Red5 cluster based on OpenStack

Science.gov (United States)

Wang, Jiaqing; Song, Jianxin

2017-08-01

With the application and development of cloud computing technology in various fields, the resource utilization rate of the data center has been improved obviously, and the system based on cloud computing platform has also improved the expansibility and stability. In the traditional way, Red5 cluster resource utilization is low and the system stability is poor. This paper uses cloud computing to efficiently calculate the resource allocation ability, and builds a Red5 server cluster based on OpenStack. Multimedia applications can be published to the Red5 cloud server cluster. The system achieves the flexible construction of computing resources, but also greatly improves the stability of the cluster and service efficiency.

GEMINI/GMOS SPECTROSCOPY OF 26 STRONG-LENSING-SELECTED GALAXY CLUSTER CORES

International Nuclear Information System (INIS)

Bayliss, Matthew B.; Gladders, Michael D.; Koester, Benjamin P.; Hennawi, Joseph F.; Sharon, Keren; Dahle, Haakon; Oguri, Masamune

2011-01-01

We present results from a spectroscopic program targeting 26 strong-lensing cluster cores that were visually identified in the Sloan Digital Sky Survey (SDSS) and the Second Red-Sequence Cluster Survey (RCS-2). The 26 galaxy cluster lenses span a redshift range of 0.2 Vir = 7.84 x 10 14 M sun h -1 0.7 , which is somewhat higher than predictions for strong-lensing-selected clusters in simulations. The disagreement is not significant considering the large uncertainty in our dynamical data, systematic uncertainties in the velocity dispersion calibration, and limitations of the theoretical modeling. Nevertheless our study represents an important first step toward characterizing large samples of clusters that are identified in a systematic way as systems exhibiting dramatic strong-lensing features.

The Gaia-ESO Survey: the present-day radial metallicity distribution of the Galactic disc probed by pre-main-sequence clusters

Science.gov (United States)

Spina, L.; Randich, S.; Magrini, L.; Jeffries, R. D.; Friel, E. D.; Sacco, G. G.; Pancino, E.; Bonito, R.; Bravi, L.; Franciosini, E.; Klutsch, A.; Montes, D.; Gilmore, G.; Vallenari, A.; Bensby, T.; Bragaglia, A.; Flaccomio, E.; Koposov, S. E.; Korn, A. J.; Lanzafame, A. C.; Smiljanic, R.; Bayo, A.; Carraro, G.; Casey, A. R.; Costado, M. T.; Damiani, F.; Donati, P.; Frasca, A.; Hourihane, A.; Jofré, P.; Lewis, J.; Lind, K.; Monaco, L.; Morbidelli, L.; Prisinzano, L.; Sousa, S. G.; Worley, C. C.; Zaggia, S.

2017-05-01

Context. The radial metallicity distribution in the Galactic thin disc represents a crucial constraint for modelling disc formation and evolution. Open star clusters allow us to derive both the radial metallicity distribution and its evolution over time. Aims: In this paper we perform the first investigation of the present-day radial metallicity distribution based on [Fe/H] determinations in late type members of pre-main-sequence clusters. Because of their youth, these clusters are therefore essential for tracing the current interstellar medium metallicity. Methods: We used the products of the Gaia-ESO Survey analysis of 12 young regions (age ages is not easily explained by the models. Our results reveal a complex interplay of several processes (e.g. star formation activity, initial mass function, supernova yields, gas flows) that controlled the recent evolution of the Milky Way. Based on observations made with the ESO/VLT, at Paranal Observatory, under program 188.B-3002 (The Gaia-ESO Public Spectroscopic Survey).Full Table 1 is only available at the CDS via anonymous ftp to http://cdsarc.u-strasbg.fr (http://130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/601/A70

Looking Wider and Further: The Evolution of Galaxies Inside Galaxy Clusters

Energy Technology Data Exchange (ETDEWEB)

Zhang, Yuanyuan [Univ. of Michigan, Ann Arbor, MI (United States)

2016-01-01

Galaxy clusters are rare objects in the universe, but on-going wide field optical surveys are identifying many thousands of them to redshift 1.0 and beyond. Using early data from the Dark Energy Survey (DES) and publicly released data from the Sloan Digital Sky Survey (SDSS), this dissertation explores the evolution of cluster galaxies in the redshift range from 0 to 1.0. As it is common for deep wide field sky surveys like DES to struggle with galaxy detection efficiency at cluster core, the first component of this dissertation describes an efficient package that helps resolving the issue. The second part focuses on the formation of cluster galaxies. The study quantifies the growth of cluster bright central galaxies (BCGs), and argues for the importance of merging and intra-cluster light production during BCG evolution. An analysis of cluster red sequence galaxy luminosity function is also performed, demonstrating that the abundance of these galaxies is mildly dependent on cluster mass and redshift. The last component of the dissertation characterizes the properties of galaxy filaments to help understanding cluster environments

Intrinsic alignments in redMaPPer clusters – I. Central galaxy alignments and angular segregation of satellites

International Nuclear Information System (INIS)

Huang, Hung-Jin; Mandelbaum, Rachel; Freeman, Peter E.; Chen, Yen-Chi

2016-01-01

The shapes of cluster central galaxies are not randomly oriented, but rather exhibit coherent alignments with the shapes of their parent clusters as well as with the surrounding large-scale structures. In this work, we aim to identify the galaxy and cluster quantities that most strongly predict the central galaxy alignment phenomenon among a large parameter space with a sample of 8237 clusters and 94 817 members within 0.1 < z < 0.35, based on the red-sequence Matched-filter Probabilistic Percolation cluster catalogue constructed from the Sloan Digital Sky Survey. We first quantify the alignment between the projected central galaxy shapes and the distribution of member satellites, to understand what central galaxy and cluster properties most strongly correlate with these alignments. Next, we investigate the angular segregation of satellites with respect to their central galaxy major axis directions, to identify the satellite properties that most strongly predict their angular segregation. We find that central galaxies are more aligned with their member galaxy distributions in clusters that are more elongated and have higher richness, and for central galaxies with larger physical size, higher luminosity and centring probability, and redder colour. Satellites with redder colour, higher luminosity, located closer to the central galaxy, and with smaller ellipticity show a stronger angular segregation towards their central galaxy major axes. Lastly, we provide physical explanations for some of the identified correlations, and discuss the connection to theories of central galaxy alignments, the impact of primordial alignments with tidal fields, and the importance of anisotropic accretion.

THE HST/ACS COMA CLUSTER SURVEY. IV. INTERGALACTIC GLOBULAR CLUSTERS AND THE MASSIVE GLOBULAR CLUSTER SYSTEM AT THE CORE OF THE COMA GALAXY CLUSTER

International Nuclear Information System (INIS)

Peng, Eric W.; Ferguson, Henry C.; Goudfrooij, Paul; Hammer, Derek; Lucey, John R.; Marzke, Ronald O.; Puzia, Thomas H.; Carter, David; Balcells, Marc; Bridges, Terry; Chiboucas, Kristin; Del Burgo, Carlos; Graham, Alister W.; Guzman, Rafael; Hudson, Michael J.; Matkovic, Ana

2011-01-01

Intracluster stellar populations are a natural result of tidal interactions in galaxy clusters. Measuring these populations is difficult, but important for understanding the assembly of the most massive galaxies. The Coma cluster of galaxies is one of the nearest truly massive galaxy clusters and is host to a correspondingly large system of globular clusters (GCs). We use imaging from the HST/ACS Coma Cluster Survey to present the first definitive detection of a large population of intracluster GCs (IGCs) that fills the Coma cluster core and is not associated with individual galaxies. The GC surface density profile around the central massive elliptical galaxy, NGC 4874, is dominated at large radii by a population of IGCs that extend to the limit of our data (R +4000 -5000 (systematic) IGCs out to this radius, and that they make up ∼70% of the central GC system, making this the largest GC system in the nearby universe. Even including the GC systems of other cluster galaxies, the IGCs still make up ∼30%-45% of the GCs in the cluster core. Observational limits from previous studies of the intracluster light (ICL) suggest that the IGC population has a high specific frequency. If the IGC population has a specific frequency similar to high-S N dwarf galaxies, then the ICL has a mean surface brightness of μ V ∼ 27 mag arcsec -2 and a total stellar mass of roughly 10 12 M sun within the cluster core. The ICL makes up approximately half of the stellar luminosity and one-third of the stellar mass of the central (NGC 4874+ICL) system. The color distribution of the IGC population is bimodal, with blue, metal-poor GCs outnumbering red, metal-rich GCs by a ratio of 4:1. The inner GCs associated with NGC 4874 also have a bimodal distribution in color, but with a redder metal-poor population. The fraction of red IGCs (20%), and the red color of those GCs, implies that IGCs can originate from the halos of relatively massive, L* galaxies, and not solely from the disruption of

The environmental impacts on the star formation main sequence: An Hα study of the newly discovered rich cluster at z = 1.52

Energy Technology Data Exchange (ETDEWEB)

Koyama, Yusei; Kodama, Tadayuki; Tadaki, Ken-ichi; Hayashi, Masao [National Astronomical Observatory of Japan, Mitaka, Tokyo 181-8588 (Japan); Tanaka, Ichi [Subaru Telescope, National Astronomical Observatory of Japan, 650 North A' ohoku Place, Hilo, HI 96720 (United States); Shimakawa, Rhythm, E-mail: koyama.yusei@nao.ac.jp [Department of Astronomical Science, The Graduate University for Advanced Studies, Mitaka, Tokyo 181-8588 (Japan)

2014-07-01

We report the discovery of a strong over-density of galaxies in the field of a radio galaxy at z = 1.52 (4C 65.22) based on our broadband and narrow-band (Hα) photometry with the Subaru Telescope. We find that Hα emitters are located in the outskirts of the density peak (cluster core) dominated by passive red-sequence galaxies. This resembles the situation in lower-redshift clusters, suggesting that the newly discovered structure is a well-evolved rich galaxy cluster at z = 1.5. Our data suggest that the color-density and stellar mass-density relations are already in place at z ∼ 1.5, mostly driven by the passive red massive galaxies residing within r{sub c} ≲ 200 kpc from the cluster core. These environmental trends almost disappear when we consider only star-forming (SF) galaxies. We do not find SFR-density or SSFR-density relations amongst SF galaxies, and the location of the SF main sequence does not significantly change with environment. Nevertheless, we find a tentative hint that star-bursting galaxies (up-scattered objects from the main sequence) are preferentially located in a small group at ∼1 Mpc away from the main body of the cluster. We also argue that the scatter of the SF main sequence could be dependent on the distance to the nearest neighboring galaxy.

HOMOGENEOUS UGRIZ PHOTOMETRY FOR ACS VIRGO CLUSTER SURVEY GALAXIES: A NON-PARAMETRIC ANALYSIS FROM SDSS IMAGING

International Nuclear Information System (INIS)

Chen, Chin-Wei; Cote, Patrick; Ferrarese, Laura; West, Andrew A.; Peng, Eric W.

2010-01-01

We present photometric and structural parameters for 100 ACS Virgo Cluster Survey (ACSVCS) galaxies based on homogeneous, multi-wavelength (ugriz), wide-field SDSS (DR5) imaging. These early-type galaxies, which trace out the red sequence in the Virgo Cluster, span a factor of nearly ∼10 3 in g-band luminosity. We describe an automated pipeline that generates background-subtracted mosaic images, masks field sources and measures mean shapes, total magnitudes, effective radii, and effective surface brightnesses using a model-independent approach. A parametric analysis of the surface brightness profiles is also carried out to obtain Sersic-based structural parameters and mean galaxy colors. We compare the galaxy parameters to those in the literature, including those from the ACSVCS, finding good agreement in most cases, although the sizes of the brightest, and most extended, galaxies are found to be most uncertain and model dependent. Our photometry provides an external measurement of the random errors on total magnitudes from the widely used Virgo Cluster Catalog, which we estimate to be σ(B T )∼ 0.13 mag for the brightest galaxies, rising to ∼ 0.3 mag for galaxies at the faint end of our sample (B T ∼ 16). The distribution of axial ratios of low-mass ( d warf ) galaxies bears a strong resemblance to the one observed for the higher-mass ( g iant ) galaxies. The global structural parameters for the full galaxy sample-profile shape, effective radius, and mean surface brightness-are found to vary smoothly and systematically as a function of luminosity, with unmistakable evidence for changes in structural homology along the red sequence. As noted in previous studies, the ugriz galaxy colors show a nonlinear but smooth variation over a ∼7 mag range in absolute magnitude, with an enhanced scatter for the faintest systems that is likely the signature of their more diverse star formation histories.

A Hubble Space Telescope Survey of the Disk Cluster Population of M31. II. Advanced Camera for Surveys Pointings

Science.gov (United States)

Krienke, O. K.; Hodge, P. W.

2008-01-01

This paper reports on a survey of star clusters in M31 based on archival images from the Hubble Space Telescope. Paper I reported results from images obtained with the Wide Field Planetary Camera 2 (WFPC2) and this paper reports results from the Advanced Camera for Surveys (ACS). The ACS survey has yielded a total of 339 star clusters, 52 of which—mostly globular clusters—were found to have been cataloged previously. As for the previous survey, the luminosity function of the clusters drops steeply for absolute magnitudes fainter than MV = -3 the implied cluster mass function has a turnover for masses less than a few hundred solar masses. The color-integrated magnitude diagram of clusters shows three significant features: (1) a group of very red, luminous objects: the globular clusters, (2) a wide range in color for the fainter clusters, representing a considerable range in age and reddening, and (3) a maximum density of clusters centered approximately at V = 21, B - V = 0.30, V - I = 0.50, where there are intermediate-age, intermediate-mass clusters with ages close to 500 million years and masses of about 2000 solar masses. We give a brief qualitative interpretation of the distribution of clusters in the CMDs in terms of their formation and destruction rates. Based on observations with the NASA/ESA Hubble Space Telescope obtained at the Space Telescope Science Institute, which is operated by the Association of Universities for research in astronomy, Inc., under NASA contract NAS 5-26555.

The next generation Virgo cluster survey. VIII. The spatial distribution of globular clusters in the Virgo cluster

Energy Technology Data Exchange (ETDEWEB)

Durrell, Patrick R.; Accetta, Katharine [Department of Physics and Astronomy, Youngstown State University, Youngstown, OH 44555 (United States); Côté, Patrick; Blakeslee, John P.; Ferrarese, Laura; McConnachie, Alan; Gwyn, Stephen [Herzberg Astronomy and Astrophysics, National Research Council, 5071 West Saanich Road, Victoria, BC V9E 2E7 (Canada); Peng, Eric W.; Zhang, Hongxin [Department of Astronomy, Peking University, Beijing 100871 (China); Mihos, J. Christopher [Department of Astronomy, Case Western Reserve University, Cleveland, OH 44106 (United States); Puzia, Thomas H.; Jordán, Andrés [Institute of Astrophysics, Pontificia Universidad Catolica, Av. Vicu' a Mackenna 4860, Macul 7820436, Santiago (Chile); Lançon, Ariane [Observatoire astronomique de Strasbourg, Université de Strasbourg, CNRS, UMR 7550, 11 rue de l' Université, F-67000 Strasbourg (France); Liu, Chengze [Center for Astronomy and Astrophysics, Department of Physics and Astronomy, Shanghai Jiao Tong University, 800 Dongchuan Road, Shanghai 200240 (China); Cuillandre, Jean-Charles [Canada-France-Hawaii Telescope Corporation, Kamuela, HI 96743 (United States); Boissier, Samuel; Boselli, Alessandro [Aix Marseille Université, CNRS, LAM (Laboratoire d' Astrophysique de Marseille) UMR 7326, F-13388 Marseille (France); Courteau, Stéphane [Department of Physics, Engineering Physics and Astronomy, Queen' s University, Kingston, ON K7L 3N6 (Canada); Duc, Pierre-Alain [AIM Paris Saclay, CNRS/INSU, CEA/Irfu, Université Paris Diderot, Orme des Merisiers, F-91191 Gif sur Yvette cedex (France); Emsellem, Eric [Université de Lyon 1, CRAL, Observatoire de Lyon, 9 av. Charles André, F-69230 Saint-Genis Laval (France); CNRS, UMR 5574, ENS de Lyon (France); and others

2014-10-20

We report on a large-scale study of the distribution of globular clusters (GCs) throughout the Virgo cluster, based on photometry from the Next Generation Virgo Cluster Survey (NGVS), a large imaging survey covering Virgo's primary subclusters (Virgo A = M87 and Virgo B = M49) out to their virial radii. Using the g{sub o}{sup ′}, (g' – i') {sub o} color-magnitude diagram of unresolved and marginally resolved sources within the NGVS, we have constructed two-dimensional maps of the (irregular) GC distribution over 100 deg{sup 2} to a depth of g{sub o}{sup ′} = 24. We present the clearest evidence to date showing the difference in concentration between red and blue GCs over the full extent of the cluster, where the red (more metal-rich) GCs are largely located around the massive early-type galaxies in Virgo, while the blue (metal-poor) GCs have a much more extended spatial distribution with significant populations still present beyond 83' (∼215 kpc) along the major axes of both M49 and M87. A comparison of our GC maps to the diffuse light in the outermost regions of M49 and M87 show remarkable agreement in the shape, ellipticity, and boxiness of both luminous systems. We also find evidence for spatial enhancements of GCs surrounding M87 that may be indicative of recent interactions or an ongoing merger history. We compare the GC map to that of the locations of Virgo galaxies and the X-ray intracluster gas, and find generally good agreement between these various baryonic structures. We calculate the Virgo cluster contains a total population of N {sub GC} = 67, 300 ± 14, 400, of which 35% are located in M87 and M49 alone. For the first time, we compute a cluster-wide specific frequency S {sub N,} {sub CL} = 2.8 ± 0.7, after correcting for Virgo's diffuse light. We also find a GC-to-baryonic mass fraction ε {sub b} = 5.7 ± 1.1 × 10{sup –4} and a GC-to-total cluster mass formation efficiency ε {sub t} = 2.9 ± 0.5 × 10{sup –5

THE SIZE DIFFERENCE BETWEEN RED AND BLUE GLOBULAR CLUSTERS IS NOT DUE TO PROJECTION EFFECTS

International Nuclear Information System (INIS)

Webb, Jeremy J.; Harris, William E.; Sills, Alison

2012-01-01

Metal-rich (red) globular clusters in massive galaxies are, on average, smaller than metal-poor (blue) globular clusters. One of the possible explanations for this phenomenon is that the two populations of clusters have different spatial distributions. We test this idea by comparing clusters observed in unusually deep, high signal-to-noise images of M87 with a simulated globular cluster population in which the red and blue clusters have different spatial distributions, matching the observations. We compare the overall distribution of cluster effective radii as well as the relationship between effective radius and galactocentric distance for both the observed and simulated red and blue sub-populations. We find that the different spatial distributions does not produce a significant size difference between the red and blue sub-populations as a whole or at a given galactocentric distance. These results suggest that the size difference between red and blue globular clusters is likely due to differences during formation or later evolution.

The Size Difference between Red and Blue Globular Clusters is not due to Projection Effects

Science.gov (United States)

Webb, Jeremy J.; Harris, William E.; Sills, Alison

2012-11-01

Metal-rich (red) globular clusters in massive galaxies are, on average, smaller than metal-poor (blue) globular clusters. One of the possible explanations for this phenomenon is that the two populations of clusters have different spatial distributions. We test this idea by comparing clusters observed in unusually deep, high signal-to-noise images of M87 with a simulated globular cluster population in which the red and blue clusters have different spatial distributions, matching the observations. We compare the overall distribution of cluster effective radii as well as the relationship between effective radius and galactocentric distance for both the observed and simulated red and blue sub-populations. We find that the different spatial distributions does not produce a significant size difference between the red and blue sub-populations as a whole or at a given galactocentric distance. These results suggest that the size difference between red and blue globular clusters is likely due to differences during formation or later evolution.

Rotational and radial velocities of 1.3-2.2 M {sub ☉} red giants in open clusters

Energy Technology Data Exchange (ETDEWEB)

Carlberg, Joleen K., E-mail: jcarlberg@dtm.ciw.edu [Department of Terrestrial Magnetism, Carnegie Institution of Washington, 5241 Broad Branch Road, NW, Washington, DC 20015 (United States)

2014-06-01

This study presents the rotational distribution of red giant (RG) stars in 11 old to intermediate age open clusters. The masses of these stars are all above the Kraft break, so they lose negligible amounts of their birth angular momentum (AM) during the main-sequence (MS) evolution. However, they do span a mass range with quite different AM distributions imparted during formation, with the stars less massive than ∼1.6M {sub ☉} arriving on the MS with lower rotation rates than the more massive stars. The majority of RGs in this study are slow rotators across the entire red giant branch regardless of mass, supporting the picture that intermediate-mass stars rapidly spin down when they evolve off the MS and develop convection zones capable of driving a magnetic dynamo. Nevertheless, a small fraction of RGs in open clusters show some level of enhanced rotation, and faster rotators are as common in these clusters as in the field RG population. Most of these enhanced rotators appear to be red clump stars, which is also true of the underlying stellar sample, while others are clearly RGs that are above or below the clump. In addition to rotational velocities, the radial velocities (RVs) and membership probabilities of individual stars are also presented. Cluster heliocentric RVs for NGC 6005 and Pismis 18 are reported for the first time.

A GMBCG GALAXY CLUSTER CATALOG OF 55,424 RICH CLUSTERS FROM SDSS DR7

International Nuclear Information System (INIS)

Hao Jiangang; Annis, James; Johnston, David E.; McKay, Timothy A.; Evrard, August; Siegel, Seth R.; Gerdes, David; Koester, Benjamin P.; Rykoff, Eli S.; Rozo, Eduardo; Wechsler, Risa H.; Busha, Michael; Becker, Matthew; Sheldon, Erin

2010-01-01

We present a large catalog of optically selected galaxy clusters from the application of a new Gaussian Mixture Brightest Cluster Galaxy (GMBCG) algorithm to SDSS Data Release 7 data. The algorithm detects clusters by identifying the red-sequence plus brightest cluster galaxy (BCG) feature, which is unique for galaxy clusters and does not exist among field galaxies. Red-sequence clustering in color space is detected using an Error Corrected Gaussian Mixture Model. We run GMBCG on 8240 deg 2 of photometric data from SDSS DR7 to assemble the largest ever optical galaxy cluster catalog, consisting of over 55,000 rich clusters across the redshift range from 0.1 < z < 0.55. We present Monte Carlo tests of completeness and purity and perform cross-matching with X-ray clusters and with the maxBCG sample at low redshift. These tests indicate high completeness and purity across the full redshift range for clusters with 15 or more members.

A GMBCG galaxy cluster catalog of 55,880 rich clusters from SDSS DR7

Energy Technology Data Exchange (ETDEWEB)

Hao, Jiangang; McKay, Timothy A.; Koester, Benjamin P.; Rykoff, Eli S.; Rozo, Eduardo; Annis, James; Wechsler, Risa H.; Evrard, August; Siegel, Seth R.; Becker, Matthew; Busha, Michael; /Fermilab /Michigan U. /Chicago U., Astron. Astrophys. Ctr. /UC, Santa Barbara /KICP, Chicago /KIPAC, Menlo Park /SLAC /Caltech /Brookhaven

2010-08-01

We present a large catalog of optically selected galaxy clusters from the application of a new Gaussian Mixture Brightest Cluster Galaxy (GMBCG) algorithm to SDSS Data Release 7 data. The algorithm detects clusters by identifying the red sequence plus Brightest Cluster Galaxy (BCG) feature, which is unique for galaxy clusters and does not exist among field galaxies. Red sequence clustering in color space is detected using an Error Corrected Gaussian Mixture Model. We run GMBCG on 8240 square degrees of photometric data from SDSS DR7 to assemble the largest ever optical galaxy cluster catalog, consisting of over 55,000 rich clusters across the redshift range from 0.1 < z < 0.55. We present Monte Carlo tests of completeness and purity and perform cross-matching with X-ray clusters and with the maxBCG sample at low redshift. These tests indicate high completeness and purity across the full redshift range for clusters with 15 or more members.

Surface Compositions of Red Giant Stars in Globular Clusters

Science.gov (United States)

Cheng, Eric; Lau, Marie; Smith, Graeme; Chen, Brian

2018-01-01

Globular clusters (GCs) are excellent “laboratories” to study the formation and evolution of our galaxy. In order to understand, more specifically, the chemical compositions and stellar evolution of the stars in GCs, we ask whether or not deep internal mixing occurs in red giants or if in fact the compositions come from the primordial interstellar medium or previous generations of stars. It has been discovered that as a star evolves up the red giant branch, the surface carbon abundance decreases, which is evidence of deep internal mixing. We questioned whether these processes also affect O or Na abundance as a star evolves. We collected measurement data of red giants from GCs out of academic journals and sorted the data into catalogs. Then, we plotted the catalogs into figures, comparing surface O and Na each with stellar luminosity. Statistical tests were ran to quantify the amount of correlation between the variables. Out of 27 GCs, we concluded that eight show a positive correlation between Na and luminosity, and two show a negative correlation between O and luminosity. Properties of GCs were compared to determine if chemical distribution in stars depends on GCs as the self-enrichment scenario suggests. We created histograms of sodium distribution to test for bimodality to examine if there are separate trends in each GC. In six GCs, two different sequences of red giants appear for Na versus luminosity, suggesting evidence that the depth of mixing may differ among each red giant in a GC. This study has provided new evidence that the changing chemical abundances on the surfaces of red giants can be due to stellar evolutionary effects and deep internal mixing, which may not necessarily depend on the GC and may differ in depth among each red giant. Through this study, we learn more about stellar evolution which will eventually help us understand the origins of our universe. Most of this work was carried out by high school students working under the auspices of

EXTRINSIC SOURCES OF SCATTER IN THE RICHNESS-MASS RELATION OF GALAXY CLUSTERS

International Nuclear Information System (INIS)

Rozo, Eduardo; Koester, Benjamin; Rykoff, Eli; Nord, Brian; Evrard, August; Wu Haoyi; Wechsler, Risa

2011-01-01

Maximizing the utility of upcoming photometric cluster surveys requires a thorough understanding of the richness-mass relation of galaxy clusters. We use Monte Carlo simulations to study the impact of various sources of observational scatter on this relation. Cluster ellipticity, photometric errors, photometric redshift errors, and cluster-to-cluster variations in the properties of red-sequence galaxies contribute negligible noise. Miscentering, however, can be important, and likely contributes to the scatter in the richness-mass relation of galaxy maxBCG clusters at the low-mass end, where centering is more difficult. We also investigate the impact of projection effects under several empirically motivated assumptions about cluster environments. Using Sloan Digital Sky Survey data and the maxBCG cluster catalog, we demonstrate that variations in cluster environments can rarely (∼1%-5% of the time) result in significant richness boosts. Due to the steepness of the mass/richness function, the corresponding fraction of optically selected clusters that suffer from these projection effects is ∼5%-15%. We expect these numbers to be generic in magnitude, but a precise determination requires detailed, survey-specific modeling.

SOUTH POLE TELESCOPE DETECTIONS OF THE PREVIOUSLY UNCONFIRMED PLANCK EARLY SUNYAEV-ZEL'DOVICH CLUSTERS IN THE SOUTHERN HEMISPHERE

International Nuclear Information System (INIS)

Story, K.; Benson, B. A.; Bleem, L. E.; Carlstrom, J. E.; Chang, C. L.; Crawford, T. M.; Crites, A. T.; Aird, K. A.; Andersson, K.; Bazin, G.; Armstrong, R.; Desai, S.; Bonamente, M.; Brodwin, M.; Foley, R. J.; Clocchiatti, A.; De Haan, T.; Dobbs, M. A.; Dudley, J. P.; George, E. M.

2011-01-01

We present South Pole Telescope (SPT) observations of the five galaxy cluster candidates in the southern hemisphere which were reported as unconfirmed in the Planck Early Sunyaev-Zel'dovich (ESZ) sample. One cluster candidate, PLCKESZ G255.62-46.16, is located in the 2500 deg 2 SPT SZ survey region and was reported previously as SPT-CL J0411-4819. For the remaining four candidates, which are located outside of the SPT SZ survey region, we performed short, dedicated SPT observations. Each of these four candidates was strongly detected in maps made from these observations, with signal-to-noise ratios ranging from 6.3 to 13.8. We have observed these four candidates on the Magellan-Baade telescope and used these data to estimate cluster redshifts from the red sequence. Resulting redshifts range from 0.24 to 0.46. We report measurements of Y 0.'75 , the integrated Comptonization within a 0.'75 radius, for all five candidates. We also report X-ray luminosities calculated from ROSAT All-Sky Survey catalog counts, as well as optical and improved SZ coordinates for each candidate. The combination of SPT SZ measurements, optical red-sequence measurements, and X-ray luminosity estimates demonstrates that these five Planck ESZ cluster candidates do indeed correspond to real galaxy clusters with redshifts and observable properties consistent with the rest of the ESZ sample.

The Gemini/HST Galaxy Cluster Project: Redshift 0.2–1.0 Cluster Sample, X-Ray Data, and Optical Photometry Catalog

Science.gov (United States)

Jørgensen, Inger; Chiboucas, Kristin; Hibon, Pascale; Nielsen, Louise D.; Takamiya, Marianne

2018-04-01

The Gemini/HST Galaxy Cluster Project (GCP) covers 14 z = 0.2–1.0 clusters with X-ray luminosity of {L}500≥slant {10}44 {erg} {{{s}}}-1 in the 0.1–2.4 keV band. In this paper, we provide homogeneously calibrated X-ray luminosities, masses, and radii, and we present the complete catalog of the ground-based photometry for the GCP clusters. The clusters were observed with either Gemini North or South in three or four of the optical passbands g‧, r‧, i‧, and z‧. The photometric catalog includes consistently calibrated total magnitudes, colors, and geometrical parameters. The photometry reaches ≈25 mag in the passband closest to the rest-frame B band. We summarize comparisons of our photometry with data from the Sloan Digital Sky Survey. We describe the sample selection for our spectroscopic observations, and establish the calibrations to obtain rest-frame magnitudes and colors. Finally, we derive the color–magnitude relations for the clusters, and briefly discuss these in the context of evolution with redshift. Consistent with our results based on spectroscopic data, the color–magnitude relations support passive evolution of the red sequence galaxies. The absence of change in the slope with redshift constrains the allowable age variation along the red sequence to <0.05 dex between the brightest cluster galaxies and those four magnitudes fainter. This paper serves as the main reference for the GCP cluster and galaxy selection, X-ray data, and ground-based photometry.

Statistical properties and fractals of nucleotide clusters in DNA sequences

International Nuclear Information System (INIS)

Sun Tingting; Zhang Linxi; Chen Jin; Jiang Zhouting

2004-01-01

Statistical properties of nucleotide clusters in DNA sequences and their fractals are investigated in this paper. The average size of nucleotide clusters in non-coding sequence is larger than that in coding sequence. We investigate the cluster-size distribution P(S) for human chromosomes 21 and 22, and the results are different from previous works. The cluster-size distribution P(S 1 +S 2 ) with the total size of sequential Pu-cluster and Py-cluster S 1 +S 2 is studied. We observe that P(S 1 +S 2 ) follows an exponential decay both in coding and non-coding sequences. However, we get different results for human chromosomes 21 and 22. The probability distribution P(S 1 ,S 2 ) of nucleotide clusters with the size of sequential Pu-cluster and Py-cluster S 1 and S 2 respectively, is also examined. In the meantime, some of the linear correlations are obtained in the double logarithmic plots of the fluctuation F(l) versus nucleotide cluster distance l along the DNA chain. The power spectrums of nucleotide clusters are also discussed, and it is concluded that the curves are flat and hardly changed and the 1/3 frequency is neither observed in coding sequence nor in non-coding sequence. These investigations can provide some insights into the nucleotide clusters of DNA sequences

THE NEXT GENERATION VIRGO CLUSTER SURVEY. X. PROPERTIES OF ULTRA-COMPACT DWARFS IN THE M87, M49, AND M60 REGIONS

Energy Technology Data Exchange (ETDEWEB)

Liu, Chengze [Center for Astronomy and Astrophysics, Department of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240 (China); Peng, Eric W.; Zhang, Hong-Xin [Department of Astronomy, Peking University, Beijing 100871 (China); Côté, Patrick; Ferrarese, Laura; Gwyn, Stephen; Blakeslee, John P. [Herzberg Institute of Astrophysics, National Research Council of Canada, Victoria, BC V9E 2E7 (Canada); Jordán, Andrés; Muñoz, Roberto P.; Puzia, Thomas H. [Instituto de Astrofísica, Facultad de Física, Pontificia Universidad Católica de Chile, Av. Vicuña Mackenna 4860, 7820436 Macul, Santiago (Chile); Mihos, J. Christopher [Department of Astronomy, Case Western Reserve University, Cleveland, OH (United States); Lançon, Ariane [Observatoire Astronomique de Strasbourg, Université de Strasbourg and CNRS, UMR 7550, 11 rue de l’Université, F-67000 Strasbourg (France); Cuillandre, Jean-Charles [CEA/IRFU/SAp, Laboratoire AIM Paris-Saclay, CNRS/INSU, Université Paris Diderot, Observatoire de Paris, PSL Research University, F-91191 Gif-sur-Yvette Cedex (France); Boselli, Alessandro [Aix-Marseille Université, CNRS, LAM (Laboratoire d’Astrophysique de Marseille) UMR 7326, F-13388, Marseille (France); Durrell, Patrick R., E-mail: czliu@sjtu.edu.cn, E-mail: peng@pku.edu.cn [Department of Physics and Astronomy, Youngstown State University, One University Plaza, Youngstown, OH 44555 (United States); and others

2015-10-10

We use imaging from the Next Generation Virgo cluster Survey (NGVS) to present a comparative study of ultra-compact dwarf (UCD) galaxies associated with three prominent Virgo sub-clusters: those centered on the massive red-sequence galaxies M87, M49, and M60. We show how UCDs can be selected with high completeness using a combination of half-light radius and location in color–color diagrams (u*iK{sub s} or u*gz). Although the central galaxies in each of these sub-clusters have nearly identical luminosities and stellar masses, we find large differences in the sizes of their UCD populations, with M87 containing ∼3.5 and 7.8 times more UCDs than M49 and M60, respectively. The relative abundance of UCDs in the three regions scales in proportion to sub-cluster mass, as traced by X-ray gas mass, total gravitating mass, number of globular clusters (GCs), and number of nearby galaxies. We find that the UCDs are predominantly blue in color, with ∼85% of the UCDs having colors similar to blue GCs and stellar nuclei of dwarf galaxies. We present evidence that UCDs surrounding M87 and M49 may follow a morphological sequence ordered by the prominence of their outer, low surface brightness envelope, ultimately merging with the sequence of nucleated low-mass galaxies, and that envelope prominence correlates with distance from either galaxy. Our analysis provides evidence that tidal stripping of nucleated galaxies is an important process in the formation of UCDs.

THE HST/ACS COMA CLUSTER SURVEY. II. DATA DESCRIPTION AND SOURCE CATALOGS

International Nuclear Information System (INIS)

Hammer, Derek; Verdoes Kleijn, Gijs; Den Brok, Mark; Peletier, Reynier F.; Hoyos, Carlos; Balcells, Marc; Aguerri, Alfonso L.; Ferguson, Henry C.; Goudfrooij, Paul; Carter, David; Guzman, Rafael; Smith, Russell J.; Lucey, John R.; Graham, Alister W.; Trentham, Neil; Peng, Eric; Puzia, Thomas H.; Jogee, Shardha; Batcheldor, Dan; Bridges, Terry J.

2010-01-01

The Coma cluster, Abell 1656, was the target of an HST-ACS Treasury program designed for deep imaging in the F475W and F814W passbands. Although our survey was interrupted by the ACS instrument failure in early 2007, the partially completed survey still covers ∼50% of the core high-density region in Coma. Observations were performed for 25 fields that extend over a wide range of cluster-centric radii (∼1.75 Mpc or 1 0 ) with a total coverage area of 274 arcmin 2 . The majority of the fields are located near the core region of Coma (19/25 pointings) with six additional fields in the southwest region of the cluster. In this paper, we present reprocessed images and SEXTRACTOR source catalogs for our survey fields, including a detailed description of the methodology used for object detection and photometry, the subtraction of bright galaxies to measure faint underlying objects, and the use of simulations to assess the photometric accuracy and completeness of our catalogs. We also use simulations to perform aperture corrections for the SEXTRACTOR Kron magnitudes based only on the measured source flux and its half-light radius. We have performed photometry for ∼73,000 unique objects; approximately one-half of our detections are brighter than the 10σ point-source detection limit at F814W = 25.8 mag (AB). The slight majority of objects (60%) are unresolved or only marginally resolved by ACS. We estimate that Coma members are 5%-10% of all source detections, which consist of a large population of unresolved compact sources (primarily globular clusters but also ultra-compact dwarf galaxies) and a wide variety of extended galaxies from a cD galaxy to dwarf low surface brightness galaxies. The red sequence of Coma member galaxies has a color-magnitude relation with a constant slope and dispersion over 9 mag (-21 F814W < -13). The initial data release for the HST-ACS Coma Treasury program was made available to the public in 2008 August. The images and catalogs described

Mass and galaxy distributions of four massive galaxy clusters from Dark Energy Survey Science Verification data

Energy Technology Data Exchange (ETDEWEB)

Melchior, P.; Suchyta, E.; Huff, E.; Hirsch, M.; Kacprzak, T.; Rykoff, E.; Gruen, D.; Armstrong, R.; Bacon, D.; Bechtol, K.; Bernstein, G. M.; Bridle, S.; Clampitt, J.; Honscheid, K.; Jain, B.; Jouvel, S.; Krause, E.; Lin, H.; MacCrann, N.; Patton, K.; Plazas, A.; Rowe, B.; Vikram, V.; Wilcox, H.; Young, J.; Zuntz, J.; Abbott, T.; Abdalla, F. B.; Allam, S. S.; Banerji, M.; Bernstein, J. P.; Bernstein, R. A.; Bertin, E.; Buckley-Geer, E.; Burke, D. L.; Castander, F. J.; da Costa, L. N.; Cunha, C. E.; Depoy, D. L.; Desai, S.; Diehl, H. T.; Doel, P.; Estrada, J.; Evrard, A. E.; Neto, A. F.; Fernandez, E.; Finley, D. A.; Flaugher, B.; Frieman, J. A.; Gaztanaga, E.; Gerdes, D.; Gruendl, R. A.; Gutierrez, G. R.; Jarvis, M.; Karliner, I.; Kent, S.; Kuehn, K.; Kuropatkin, N.; Lahav, O.; Maia, M. A. G.; Makler, M.; Marriner, J.; Marshall, J. L.; Merritt, K. W.; Miller, C. J.; Miquel, R.; Mohr, J.; Neilsen, E.; Nichol, R. C.; Nord, B. D.; Reil, K.; Roe, N. A.; Roodman, A.; Sako, M.; Sanchez, E.; Santiago, B. X.; Schindler, R.; Schubnell, M.; Sevilla-Noarbe, I.; Sheldon, E.; Smith, C.; Soares-Santos, M.; Swanson, M. E. C.; Sypniewski, A. J.; Tarle, G.; Thaler, J.; Thomas, D.; Tucker, D. L.; Walker, A.; Wechsler, R.; Weller, J.; Wester, W.

2015-03-31

We measure the weak-lensing masses and galaxy distributions of four massive galaxy clusters observed during the Science Verification phase of the Dark Energy Survey. This pathfinder study is meant to 1) validate the DECam imager for the task of measuring weak-lensing shapes, and 2) utilize DECam's large field of view to map out the clusters and their environments over 90 arcmin. We conduct a series of rigorous tests on astrometry, photometry, image quality, PSF modeling, and shear measurement accuracy to single out flaws in the data and also to identify the optimal data processing steps and parameters. We find Science Verification data from DECam to be suitable for the lensing analysis described in this paper. The PSF is generally well-behaved, but the modeling is rendered difficult by a flux-dependent PSF width and ellipticity. We employ photometric redshifts to distinguish between foreground and background galaxies, and a red-sequence cluster finder to provide cluster richness estimates and cluster-galaxy distributions. By fitting NFW profiles to the clusters in this study, we determine weak-lensing masses that are in agreement with previous work. For Abell 3261, we provide the first estimates of redshift, weak-lensing mass, and richness. In addition, the cluster-galaxy distributions indicate the presence of filamentary structures attached to 1E 0657-56 and RXC J2248.7-4431, stretching out as far as 1 degree (approximately 20 Mpc), showcasing the potential of DECam and DES for detailed studies of degree-scale features on the sky.

Planck/SDSS Cluster Mass and Gas Scaling Relations for a Volume-Complete redMaPPer Sample

Science.gov (United States)

Jimeno, Pablo; Diego, Jose M.; Broadhurst, Tom; De Martino, I.; Lazkoz, Ruth

2018-04-01

Using Planck satellite data, we construct Sunyaev-Zel'dovich (SZ) gas pressure profiles for a large, volume-complete sample of optically selected clusters. We have defined a sample of over 8,000 redMaPPer clusters from the Sloan Digital Sky Survey (SDSS), within the volume-complete redshift region 0.100 trend towards larger break radius with increasing cluster mass. Our SZ-based masses fall ˜16% below the mass-richness relations from weak lensing, in a similar fashion as the "hydrostatic bias" related with X-ray derived masses. Finally, we derive a tight Y500-M500 relation over a wide range of cluster mass, with a power law slope equal to 1.70 ± 0.07, that agrees well with the independent slope obtained by the Planck team with an SZ-selected cluster sample, but extends to lower masses with higher precision.

AMPLITUDES OF SOLAR-LIKE OSCILLATIONS: CONSTRAINTS FROM RED GIANTS IN OPEN CLUSTERS OBSERVED BY KEPLER

International Nuclear Information System (INIS)

Stello, Dennis; Huber, Daniel; Bedding, Timothy R.; Benomar, Othman; Kallinger, Thomas; Basu, Sarbani; Mosser, BenoIt; Hekker, Saskia; Mathur, Savita; GarcIa, Rafael A.; Kjeldsen, Hans; Grundahl, Frank; Christensen-Dalsgaard, Joergen; Gilliland, Ronald L.; Verner, Graham A.; Chaplin, William J.; Elsworth, Yvonne P.; Meibom, Soeren; Molenda-Zakowicz, Joanna; Szabo, Robert

2011-01-01

Scaling relations that link asteroseismic quantities to global stellar properties are important for gaining understanding of the intricate physics that underpins stellar pulsations. The common notion that all stars in an open cluster have essentially the same distance, age, and initial composition implies that the stellar parameters can be measured to much higher precision than what is usually achievable for single stars. This makes clusters ideal for exploring the relation between the mode amplitude of solar-like oscillations and the global stellar properties. We have analyzed data obtained with NASA's Kepler space telescope to study solar-like oscillations in 100 red giant stars located in either of the three open clusters, NGC 6791, NGC 6819, and NGC 6811. By fitting the measured amplitudes to predictions from simple scaling relations that depend on luminosity, mass, and effective temperature, we find that the data cannot be described by any power of the luminosity-to-mass ratio as previously assumed. As a result we provide a new improved empirical relation which treats luminosity and mass separately. This relation turns out to also work remarkably well for main-sequence and subgiant stars. In addition, the measured amplitudes reveal the potential presence of a number of previously unknown unresolved binaries in the red clump in NGC 6791 and NGC 6819, pointing to an interesting new application for asteroseismology as a probe into the formation history of open clusters.

Protein sequences clustering of herpes virus by using Tribe Markov clustering (Tribe-MCL)

Science.gov (United States)

Bustamam, A.; Siswantining, T.; Febriyani, N. L.; Novitasari, I. D.; Cahyaningrum, R. D.

2017-07-01

The herpes virus can be found anywhere and one of the important characteristics is its ability to cause acute and chronic infection at certain times so as a result of the infection allows severe complications occurred. The herpes virus is composed of DNA containing protein and wrapped by glycoproteins. In this work, the Herpes viruses family is classified and analyzed by clustering their protein-sequence using Tribe Markov Clustering (Tribe-MCL) algorithm. Tribe-MCL is an efficient clustering method based on the theory of Markov chains, to classify protein families from protein sequences using pre-computed sequence similarity information. We implement the Tribe-MCL algorithm using an open source program of R. We select 24 protein sequences of Herpes virus obtained from NCBI database. The dataset consists of three types of glycoprotein B, F, and H. Each type has eight herpes virus that infected humans. Based on our simulation using different inflation factor r=1.5, 2, 3 we find a various number of the clusters results. The greater the inflation factor the greater the number of their clusters. Each protein will grouped together in the same type of protein.

THE DISCOVERY OF A MASSIVE CLUSTER OF RED SUPERGIANTS WITH GLIMPSE

International Nuclear Information System (INIS)

Alexander, Michael J.; Kobulnicky, Henry A.; Clemens, Dan P.; Jameson, Katherine; Pinnick, April; Pavel, Michael

2009-01-01

We report the discovery of a previously unknown massive Galactic star cluster at l = 29. 0 22, b = -0. 0 20. Identified visually in mid-IR images from the Spitzer GLIMPSE survey, the cluster contains at least eight late-type supergiants, based on follow-up near-IR spectroscopy, and an additional 3-6 candidate supergiant members having IR photometry consistent with a similar distance and reddening. The cluster lies at a local minimum in the 13 CO column density and 8 μm emission. We interpret this feature as a hole carved by the energetic winds of the evolving massive stars. The 13 CO hole seen in molecular maps at V LSR ∼ 95 km s -1 corresponds to near/far kinematic distances of 6.1/8.7 ± 1 kpc. We calculate a mean spectrophotometric distance of 7.0 +3.7 -2.4 kpc, broadly consistent with the kinematic distances inferred. This location places it near the northern end of the Galactic bar. For the mean extinction of A V = 12.6 ± 0.5 mag (A K = 1.5 ± 0.1 mag), the color-magnitude diagram of probable cluster members is well fit by isochrones in the age range 18-24 Myr. The estimated cluster mass is ∼20,000 M sun . With the most massive original cluster stars likely deceased, no strong radio emission is detected in this vicinity. As such, this red supergiant (RSG) cluster is representative of adolescent massive Galactic clusters that lie hidden behind many magnitudes of dust obscuration. This cluster joins two similar RSG clusters as residents of the volatile region where the end of our Galaxy's bar joins the base of the Scutum-Crux spiral arm, suggesting a recent episode of widespread massive star formation there.

Intrinsic alignment in redMaPPer clusters - II. Radial alignment of satellites towards cluster centres

Science.gov (United States)

Huang, Hung-Jin; Mandelbaum, Rachel; Freeman, Peter E.; Chen, Yen-Chi; Rozo, Eduardo; Rykoff, Eli

2018-03-01

We study the orientations of satellite galaxies in redMaPPer clusters constructed from the Sloan Digital Sky Survey at 0.1 measurement methods (re-Gaussianization, de Vaucouleurs, and isophotal shapes), which trace galaxy light profiles at different radii. The measured SA signal depends on these shape measurement methods. We detect the strongest SA signal in isophotal shapes, followed by de Vaucouleurs shapes. While no net SA signal is detected using re-Gaussianization shapes across the entire sample, the observed SA signal reaches a statistically significant level when limiting to a subsample of higher luminosity satellites. We further investigate the impact of noise, systematics, and real physical isophotal twisting effects in the comparison between the SA signal detected via different shape measurement methods. Unlike previous studies, which only consider the dependence of SA on a few parameters, here we explore a total of 17 galaxy and cluster properties, using a statistical model averaging technique to naturally account for parameter correlations and identify significant SA predictors. We find that the measured SA signal is strongest for satellites with the following characteristics: higher luminosity, smaller distance to the cluster centre, rounder in shape, higher bulge fraction, and distributed preferentially along the major axis directions of their centrals. Finally, we provide physical explanations for the identified dependences and discuss the connection to theories of SA.

Extrinsic Sources of Scatter in the Richness-Mass Relation of Galaxy Clusters

Energy Technology Data Exchange (ETDEWEB)

Rozo, Eduardo; /Chicago U. /Chicago U., KICP; Rykoff, Eli; /LBL, Berkeley; Koester, Benjamin; /Chicago U., Astron. Astrophys. Ctr.; Nord, Brian; /Michigan U.; Wu, Hao-Yi; /KIPAC, Menlo Park /Stanford U., Phys. Dept.; Evrard, August; /Michigan U.; Wechsler, Risa; /KIPAC, Menlo Park /Stanford U., Phys. Dept.

2012-03-27

Maximizing the utility of upcoming photometric cluster surveys requires a thorough understanding of the richness-mass relation of galaxy clusters. We use Monte Carlo simulations to study the impact of various sources of observational scatter on this relation. Cluster ellipticity, photometric errors, photometric redshift errors, and cluster-to-cluster variations in the properties of red-sequence galaxies contribute negligible noise. Miscentering, however, can be important, and likely contributes to the scatter in the richness - mass relation of galaxy maxBCG clusters at the low mass end, where centering is more difficult. We also investigate the impact of projection effects under several empirically motivated assumptions about cluster environments. Using SDSS data and the maxBCG cluster catalog, we demonstrate that variations in cluster environments can rarely ({approx} 1%-5% of the time) result in significant richness boosts. Due to the steepness of the mass/richness function, the corresponding fraction of optically selected clusters that suffer from these projection effects is {approx} 5%-15%. We expect these numbers to be generic in magnitude, but a precise determination requires detailed, survey-specific modeling.

Molecular Survey of Hepatozoon canis in Red Foxes (Vulpes vulpes) from Romania.

Science.gov (United States)

Imre, Mirela; Dudu, Andreea; Ilie, Marius S; Morariu, Sorin; Imre, Kálmán; Dărăbuş, Gheorghe

2015-08-01

Blood samples of 119 red foxes, originating from 44 hunting grounds of 3 western counties (Arad, Hunedoara, and Timiş) of Romania, have been examined for the presence of Hepatozoon canis infection using the conventional polymerase chain reaction (PCR) of the fragment of 18S rRNA gene. Overall, 15 (12.6%) samples were found to be PCR-positive. Of the sampled hunting grounds, 29.5% (13/44) were found positive. Positive samples were recorded in all screened counties with the prevalence of 14.8% (9/61) in Arad, 9.8% (5/51) in Timiş, and 14.3% (1/7) in Hunedoara, respectively. No correlation was found (P > 0.05) between H. canis positivity and gender or territorial distribution of the infection. To confirm PCR results, 9 randomly selected amplicons were sequenced. The obtained sequences were identical to each other, confirmed the results of the conventional PCR, and showed 98-100% homology to other H. canis sequences. The results of the current survey support the role of red foxes as sylvatic reservoirs of H. canis in Romania.

SPATIAL ANISOTROPY OF GALAXY KINEMATICS IN SLOAN DIGITAL SKY SURVEY GALAXY CLUSTERS

International Nuclear Information System (INIS)

Skielboe, Andreas; Wojtak, Radosław; Pedersen, Kristian; Rozo, Eduardo; Rykoff, Eli S.

2012-01-01

Measurements of galaxy cluster kinematics are important in understanding the dynamical state and evolution of clusters of galaxies, as well as constraining cosmological models. While it is well established that clusters exhibit non-spherical geometries, evident in the distribution of galaxies on the sky, azimuthal variations of galaxy kinematics within clusters have yet to be observed. Here we measure the azimuthal dependence of the line-of-sight velocity dispersion profile in a stacked sample of 1743 galaxy clusters from the Sloan Digital Sky Survey (SDSS). The clusters are drawn from the SDSS DR8 redMaPPer catalog. We find that the line-of-sight velocity dispersion of galaxies lying along the major axis of the central galaxy is larger than those that lie along the minor axis. This is the first observational detection of anisotropic kinematics of galaxies in clusters. We show that the result is consistent with predictions from numerical simulations. Furthermore, we find that the degree of projected anisotropy is strongly dependent on the line-of-sight orientation of the galaxy cluster, opening new possibilities for assessing systematics in optical cluster finding.

TESTING STELLAR POPULATION SYNTHESIS MODELS WITH SLOAN DIGITAL SKY SURVEY COLORS OF M31's GLOBULAR CLUSTERS

International Nuclear Information System (INIS)

Peacock, Mark B.; Zepf, Stephen E.; Maccarone, Thomas J.; Kundu, Arunav

2011-01-01

Accurate stellar population synthesis models are vital in understanding the properties and formation histories of galaxies. In order to calibrate and test the reliability of these models, they are often compared with observations of star clusters. However, relatively little work has compared these models in the ugriz filters, despite the recent widespread use of this filter set. In this paper, we compare the integrated colors of globular clusters in the Sloan Digital Sky Survey (SDSS) with those predicted from commonly used simple stellar population (SSP) models. The colors are based on SDSS observations of M31's clusters and provide the largest population of star clusters with accurate photometry available from the survey. As such, it is a unique sample with which to compare SSP models with SDSS observations. From this work, we identify a significant offset between the SSP models and the clusters' g - r colors, with the models predicting colors which are too red by g - r ∼ 0.1. This finding is consistent with previous observations of luminous red galaxies in the SDSS, which show a similar discrepancy. The identification of this offset in globular clusters suggests that it is very unlikely to be due to a minority population of young stars. The recently updated SSP model of Maraston and Stroembaeck better represents the observed g - r colors. This model is based on the empirical MILES stellar library, rather than theoretical libraries, suggesting an explanation for the g - r discrepancy.

Studying dark energy with galaxy cluster surveys

International Nuclear Information System (INIS)

Mohr, Joseph J.; O'Shea, Brian; Evrard, August E.; Bialek, John; Haiman, Zoltan

2003-01-01

Galaxy cluster surveys provide a powerful means of studying the density and nature of the dark energy. The redshift distribution of detected clusters in a deep, large solid angle SZE or X-ray survey is highly sensitive to the dark energy equation of state. Accurate constraints at the 5% level on the dark energy equation of state require that systematic biases in the mass estimators must be controlled at better than the ∼10% level. Observed regularity in the cluster population and the availability of multiple, independent mass estimators suggests these precise measurements are possible. Using hydrodynamical simulations that include preheating, we show that the level of preheating required to explain local galaxy cluster structure has a dramatic effect on X-ray cluster surveys, but only a mild effect on SZE surveys. This suggests that SZE surveys may be optimal for cosmology while X-ray surveys are well suited for studies of the thermal history of the intracluster medium

Complete sequence and analysis of plastid genomes of two economically important red algae: Pyropia haitanensis and Pyropia yezoensis.

Directory of Open Access Journals (Sweden)

Li Wang

Full Text Available Pyropia haitanensis and P. yezoensis are two economically important marine crops that are also considered to be research models to study the physiological ecology of intertidal seaweed communities, evolutionary biology of plastids, and the origins of sexual reproduction. This plastid genome information will facilitate study of breeding, population genetics and phylogenetics.We have fully sequenced using next-generation sequencing the circular plastid genomes of P. hatanensis (195,597 bp and P. yezoensis (191,975 bp, the largest of all the plastid genomes of the red lineage sequenced to date. Organization and gene contents of the two plastids were similar, with 211-213 protein-coding genes (including 29-31 unknown-function ORFs, 37 tRNA genes, and 6 ribosomal RNA genes, suggesting a largest coding capacity in the red lineage. In each genome, 14 protein genes overlapped and no interrupted genes were found, indicating a high degree of genomic condensation. Pyropia maintain an ancient gene content and conserved gene clusters in their plastid genomes, containing nearly complete repertoires of the plastid genes known in photosynthetic eukaryotes. Similarity analysis based on the whole plastid genome sequences showed the distance between P. haitanensis and P. yezoensis (0.146 was much smaller than that of Porphyra purpurea and P. haitanensis (0.250, and P. yezoensis (0.251; this supports re-grouping the two species in a resurrected genus Pyropia while maintaining P. purpurea in genus Porphyra. Phylogenetic analysis supports a sister relationship between Bangiophyceae and Florideophyceae, though precise phylogenetic relationships between multicellular red alage and chromists were not fully resolved.These results indicate that Pyropia have compact plastid genomes. Large coding capacity and long intergenic regions contribute to the size of the largest plastid genomes reported for the red lineage. Possessing the largest coding capacity and ancient gene

THE RISE AND FALL OF PASSIVE DISK GALAXIES: MORPHOLOGICAL EVOLUTION ALONG THE RED SEQUENCE REVEALED BY COSMOS

International Nuclear Information System (INIS)

Bundy, Kevin; Hopkins, Philip; Ma, Chung-Pei; Scarlata, Claudia; Capak, Peter; Carollo, C. M.; Oesch, Pascal; Ellis, Richard S.; Salvato, Mara; Scoville, Nick; Drory, Niv; Leauthaud, Alexie; Koekemoer, Anton M.; Murray, Norman; Ilbert, Olivier; Pozzetti, Lucia

2010-01-01

The increasing abundance of passive 'red-sequence' galaxies since z ∼ 1-2 is mirrored by a coincident rise in the number of galaxies with spheroidal morphologies. In this paper, however, we show in detail, that, the correspondence between galaxy morphology and color is not perfect, providing insight into the physical origin of this evolution. Using the COSMOS survey, we study a significant population of red-sequence galaxies with disk-like morphologies. These passive disks typically have Sa-Sb morphological types with large bulges, but they are not confined to dense environments. They represent nearly one-half of all red-sequence galaxies and dominate at lower masses (∼ 10 M sun ) where they are increasingly disk-dominated. As a function of time, the abundance of passive disks with M * ∼ 11 M sun increases, but not as fast as red-sequence spheroidals in the same mass range. At higher mass, the passive disk population has declined since z ∼ 1, likely because they transform into spheroidals. Based on these trends, we estimate that as much as 60% of galaxies transitioning onto the red sequence evolve through a passive disk phase. The origin of passive disks therefore has broad implications for our understanding of how star formation shuts down. Because passive disks tend to be more bulge-dominated than their star-forming counterparts, a simple fading of blue disks does not fully explain their origin. We explore the strengths and weaknesses of several more sophisticated explanations, including environmental effects, internal stabilization, and disk regrowth during gas-rich mergers. While previous work has sought to explain color and morphological transformations with a single process, these observations open the way to new insight by highlighting the fact that galaxy evolution may actually proceed through several separate stages.

The sluggs survey: HST/ACS mosaic imaging of the NGC 3115 globular cluster system

Energy Technology Data Exchange (ETDEWEB)

Jennings, Zachary G.; Romanowsky, Aaron J.; Brodie, Jean P.; Arnold, Jacob A. [University of California Observatories, Santa Cruz, CA 95064 (United States); Strader, Jay [Department of Physics and Astronomy, Michigan State University, East Lansing, Michigan, MI 48824 (United States); Lin, Dacheng; Irwin, Jimmy A.; Wong, Ka-Wah [Department of Physics and Astronomy, University of Alabama, Box 870324, Tuscaloosa, AL 35487 (United States); Sivakoff, Gregory R., E-mail: zgjennin@ucsc.edu [Department of Physics, University of Alberta, Edmonton, Alberta T6G 2E1 (Canada)

2014-08-01

We present Hubble Space Telescope/Advanced Camera for Surveys (HST/ACS) g and z photometry and half-light radii R {sub h} measurements of 360 globular cluster (GC) candidates around the nearby S0 galaxy NGC 3115. We also include Subaru/Suprime-Cam g, r, and i photometry of 421 additional candidates. The well-established color bimodality of the GC system is obvious in the HST/ACS photometry. We find evidence for a 'blue tilt' in the blue GC subpopulation, wherein the GCs in the blue subpopulation get redder as luminosity increases, indicative of a mass-metallicity relationship. We find a color gradient in both the red and blue subpopulations, with each group of clusters becoming bluer at larger distances from NGC 3115. The gradient is of similar strength in both subpopulations, but is monotonic and more significant for the blue clusters. On average, the blue clusters have ∼10% larger R {sub h} than the red clusters. This average difference is less than is typically observed for early-type galaxies but does match that measured in the literature for the Sombrero Galaxy (M104), suggesting that morphology and inclination may affect the measured size difference between the red and blue clusters. However, the scatter on the R {sub h} measurements is large. We also identify 31 clusters more extended than typical GCs, which we term ultra-compact dwarf (UCD) candidates. Many of these objects are actually considerably fainter than typical UCDs. While it is likely that a significant number will be background contaminants, six of these UCD candidates are spectroscopically confirmed as NGC 3115 members. To explore the prevalence of low-mass X-ray binaries in the GC system, we match our ACS and Suprime-Cam detections to corresponding Chandra X-ray sources. We identify 45 X-ray-GC matches: 16 among the blue subpopulation and 29 among the red subpopulation. These X-ray/GC coincidence fractions are larger than is typical for most GC systems, probably due to the increased

Centroid based clustering of high throughput sequencing reads based on n-mer counts.

Science.gov (United States)

Solovyov, Alexander; Lipkin, W Ian

2013-09-08

Many problems in computational biology require alignment-free sequence comparisons. One of the common tasks involving sequence comparison is sequence clustering. Here we apply methods of alignment-free comparison (in particular, comparison using sequence composition) to the challenge of sequence clustering. We study several centroid based algorithms for clustering sequences based on word counts. Study of their performance shows that using k-means algorithm with or without the data whitening is efficient from the computational point of view. A higher clustering accuracy can be achieved using the soft expectation maximization method, whereby each sequence is attributed to each cluster with a specific probability. We implement an open source tool for alignment-free clustering. It is publicly available from github: https://github.com/luscinius/afcluster. We show the utility of alignment-free sequence clustering for high throughput sequencing analysis despite its limitations. In particular, it allows one to perform assembly with reduced resources and a minimal loss of quality. The major factor affecting performance of alignment-free read clustering is the length of the read.

New red giant star in the Kepler open cluster NGC 6819

Science.gov (United States)

Komucyeya, E.; Abedigamba, O. P.; Jurua, E.; Anguma, S. K.

2018-05-01

A recent study indicated that 39 red giant stars showing solar-like oscillations were discovered in the field of Kepleropen cluster NGC 6819. The study was based on photometric distance estimates of 27 stars out of the 39. Using photometric method alone may not be adequate to confirm the membership of these stars. The stars were not previously known in literature to belong to the open cluster NGC 6819. In this study, Kepler data was used to study the membership of the 27 stars. A plot of apparent magnitude as a function of the large frequency separation, supplemented with the proper motion and radial velocity values from literature revealed KIC 5112840 to lie on the same plane with the well known members of the cluster. Echelle diagram was constructed, and the median gravity-mode period spacings (ΔP) calculated for KIC 5112840. A value of ΔP = 66.3 s was obtained, thus placing the red giant star KIC 5112840 on the Red Giant Branch stage of evolution. Our evolutionary status result using the approach in this paper is in agreement with what is in the available literature.

MODELING THE RED SEQUENCE: HIERARCHICAL GROWTH YET SLOW LUMINOSITY EVOLUTION

International Nuclear Information System (INIS)

Skelton, Rosalind E.; Bell, Eric F.; Somerville, Rachel S.

2012-01-01

We explore the effects of mergers on the evolution of massive early-type galaxies by modeling the evolution of their stellar populations in a hierarchical context. We investigate how a realistic red sequence population set up by z ∼ 1 evolves under different assumptions for the merger and star formation histories, comparing changes in color, luminosity, and mass. The purely passive fading of existing red sequence galaxies, with no further mergers or star formation, results in dramatic changes at the bright end of the luminosity function and color-magnitude relation. Without mergers there is too much evolution in luminosity at a fixed space density compared to observations. The change in color and magnitude at a fixed mass resembles that of a passively evolving population that formed relatively recently, at z ∼ 2. Mergers among the red sequence population ('dry mergers') occurring after z = 1 build up mass, counteracting the fading of the existing stellar populations to give smaller changes in both color and luminosity for massive galaxies. By allowing some galaxies to migrate from the blue cloud onto the red sequence after z = 1 through gas-rich mergers, younger stellar populations are added to the red sequence. This manifestation of the progenitor bias increases the scatter in age and results in even smaller changes in color and luminosity between z = 1 and z = 0 at a fixed mass. The resultant evolution appears much slower, resembling the passive evolution of a population that formed at high redshift (z ∼ 3-5), and is in closer agreement with observations. We conclude that measurements of the luminosity and color evolution alone are not sufficient to distinguish between the purely passive evolution of an old population and cosmologically motivated hierarchical growth, although these scenarios have very different implications for the mass growth of early-type galaxies over the last half of cosmic history.

K2: A NEW METHOD FOR THE DETECTION OF GALAXY CLUSTERS BASED ON CANADA-FRANCE-HAWAII TELESCOPE LEGACY SURVEY MULTICOLOR IMAGES

International Nuclear Information System (INIS)

Thanjavur, Karun; Willis, Jon; Crampton, David

2009-01-01

We have developed a new method, K2, optimized for the detection of galaxy clusters in multicolor images. Based on the Red Sequence approach, K2 detects clusters using simultaneous enhancements in both colors and position. The detection significance is robustly determined through extensive Monte Carlo simulations and through comparison with available cluster catalogs based on two different optical methods, and also on X-ray data. K2 also provides quantitative estimates of the candidate clusters' richness and photometric redshifts. Initially, K2 was applied to the two color (gri) 161 deg 2 images of the Canada-France-Hawaii Telescope Legacy Survey Wide (CFHTLS-W) data. Our simulations show that the false detection rate for these data, at our selected threshold, is only ∼1%, and that the cluster catalogs are ∼80% complete up to a redshift of z = 0.6 for Fornax-like and richer clusters and to z ∼ 0.3 for poorer clusters. Based on the g-, r-, and i-band photometric catalogs of the Terapix T05 release, 35 clusters/deg 2 are detected, with 1-2 Fornax-like or richer clusters every 2 deg 2 . Catalogs containing data for 6144 galaxy clusters have been prepared, of which 239 are rich clusters. These clusters, especially the latter, are being searched for gravitational lenses-one of our chief motivations for cluster detection in CFHTLS. The K2 method can be easily extended to use additional color information and thus improve overall cluster detection to higher redshifts. The complete set of K2 cluster catalogs, along with the supplementary catalogs for the member galaxies, are available on request from the authors.

ESPRIT-Forest: Parallel clustering of massive amplicon sequence data in subquadratic time.

Science.gov (United States)

Cai, Yunpeng; Zheng, Wei; Yao, Jin; Yang, Yujie; Mai, Volker; Mao, Qi; Sun, Yijun

2017-04-01

The rapid development of sequencing technology has led to an explosive accumulation of genomic sequence data. Clustering is often the first step to perform in sequence analysis, and hierarchical clustering is one of the most commonly used approaches for this purpose. However, it is currently computationally expensive to perform hierarchical clustering of extremely large sequence datasets due to its quadratic time and space complexities. In this paper we developed a new algorithm called ESPRIT-Forest for parallel hierarchical clustering of sequences. The algorithm achieves subquadratic time and space complexity and maintains a high clustering accuracy comparable to the standard method. The basic idea is to organize sequences into a pseudo-metric based partitioning tree for sub-linear time searching of nearest neighbors, and then use a new multiple-pair merging criterion to construct clusters in parallel using multiple threads. The new algorithm was tested on the human microbiome project (HMP) dataset, currently one of the largest published microbial 16S rRNA sequence dataset. Our experiment demonstrated that with the power of parallel computing it is now compu- tationally feasible to perform hierarchical clustering analysis of tens of millions of sequences. The software is available at http://www.acsu.buffalo.edu/∼yijunsun/lab/ESPRIT-Forest.html.

Discovery of Extended Main-sequence Turnoffs in Four Young Massive Clusters in the Magellanic Clouds

Energy Technology Data Exchange (ETDEWEB)

Li, Chengyuan [Department of Physics and Astronomy, Macquarie University, Sydney, NSW 2109 (Australia); De Grijs, Richard [Kavli Institute for Astronomy and Astrophysics and Department of Astronomy, Peking University, Yi He Yuan Lu 5, Hai Dian District, Beijing 100871 (China); Deng, Licai [Key Laboratory for Optical Astronomy, National Astronomical Observatories, Chinese Academy of Sciences, 20A Datun Road, Chaoyang District, Beijing 100012 (China); Milone, Antonino P. [Research School of Astronomy and Astrophysics, Australian National University, Mt. Stromlo Observatory, Cotter Road, Weston, ACT 2611 (Australia)

2017-08-01

An increasing number of young massive clusters (YMCs) in the Magellanic Clouds have been found to exhibit bimodal or extended main sequences (MSs) in their color–magnitude diagrams (CMDs). These features are usually interpreted in terms of a coeval stellar population with different stellar rotational rates, where the blue and red MS stars are populated by non- (or slowly) and rapidly rotating stellar populations, respectively. However, some studies have shown that an age spread of several million years is required to reproduce the observed wide turnoff regions in some YMCs. Here we present the ultraviolet–visual CMDs of four Large and Small Magellanic Cloud YMCs, NGC 330, NGC 1805, NGC 1818, and NGC 2164, based on high-precision Hubble Space Telescope photometry. We show that they all exhibit extended main-sequence turnoffs (MSTOs). The importance of age spreads and stellar rotation in reproducing the observations is investigated. The observed extended MSTOs cannot be explained by stellar rotation alone. Adopting an age spread of 35–50 Myr can alleviate this difficulty. We conclude that stars in these clusters are characterized by ranges in both their ages and rotation properties, but the origin of the age spread in these clusters remains unknown.

Insertion sequences enrichment in extreme Red sea brine pool vent

KAUST Repository

Elbehery, Ali H. A.

2016-12-03

Mobile genetic elements are major agents of genome diversification and evolution. Limited studies addressed their characteristics, including abundance, and role in extreme habitats. One of the rare natural habitats exposed to multiple-extreme conditions, including high temperature, salinity and concentration of heavy metals, are the Red Sea brine pools. We assessed the abundance and distribution of different mobile genetic elements in four Red Sea brine pools including the world’s largest known multiple-extreme deep-sea environment, the Red Sea Atlantis II Deep. We report a gradient in the abundance of mobile genetic elements, dramatically increasing in the harshest environment of the pool. Additionally, we identified a strong association between the abundance of insertion sequences and extreme conditions, being highest in the harshest and deepest layer of the Red Sea Atlantis II Deep. Our comparative analyses of mobile genetic elements in secluded, extreme and relatively non-extreme environments, suggest that insertion sequences predominantly contribute to polyextremophiles genome plasticity.

Dark Energy Survey Year 1 Results: Calibration of redMaGiC Redshift Distributions in DES and SDSS from Cross-Correlations

Energy Technology Data Exchange (ETDEWEB)

Cawthon, R.; et al.

2017-12-19

We present calibrations of the redshift distributions of redMaGiC galaxies in the Dark Energy Survey Year 1 (DES Y1) and Sloan Digital Sky Survey (SDSS) DR8 data. These results determine the priors of the redshift distribution of redMaGiC galaxies, which were used for galaxy clustering measurements and as lenses for galaxy-galaxy lensing measurements in DES Y1 cosmological analyses. We empirically determine the bias in redMaGiC photometric redshift estimates using angular cross-correlations with Baryon Oscillation Spectroscopic Survey (BOSS) galaxies. For DES, we calibrate a single parameter redshift bias in three photometric redshift bins: $z \\in[0.15,0.3]$, [0.3,0.45], and [0.45,0.6]. Our best fit results in each bin give photometric redshift biases of $|\\Delta z|<0.01$. To further test the redMaGiC algorithm, we apply our calibration procedure to SDSS redMaGiC galaxies, where the statistical precision of the cross-correlation measurement is much higher due to a greater overlap with BOSS galaxies. For SDSS, we also find best fit results of $|\\Delta z|<0.01$. We compare our results to other analyses of redMaGiC photometric redshifts.

WIYN OPEN CLUSTER STUDY. XXIV. STELLAR RADIAL-VELOCITY MEASUREMENTS IN NGC 6819

International Nuclear Information System (INIS)

Tabetha Hole, K.; Geller, Aaron M.; Mathieu, Robert D.; Meibom, Soeren; Platais, Imants; Latham, David W.

2009-01-01

We present the current results from our ongoing radial-velocity (RV) survey of the intermediate-age (2.4 Gyr) open cluster NGC 6819. Using both newly observed and other available photometry and astrometry, we define a primary target sample of 1454 stars that includes main-sequence, subgiant, giant, and blue straggler stars, spanning a magnitude range of 11 ≤V≤ 16.5 and an approximate mass range of 1.1-1.6 M sun . Our sample covers a 23 arcminute (13 pc) square field of view centered on the cluster. We have measured 6571 radial velocities for an unbiased sample of 1207 stars in the direction of the open cluster NGC 6819, with a single-measurement precision of 0.4 km s -1 for most narrow-lined stars. We use our RV data to calculate membership probabilities for stars with ≥3 measurements, providing the first comprehensive membership study of the cluster core that includes stars from the giant branch through the upper main sequence. We identify 480 cluster members. Additionally, we identify velocity-variable systems, all of which are likely hard binaries that dynamically power the cluster. Using our single cluster members, we find a cluster average RV of 2.34 ± 0.05 km s -1 . We use our kinematic cluster members to construct a cleaned color-magnitude diagram from which we identify rich giant, subgiant, and blue straggler populations and a well defined red clump. The cluster displays a morphology near the cluster turnoff clearly indicative of core convective overshoot. Finally, we discuss a few stars of note, one of which is a short-period red-clump binary that we suggest may be the product of a dynamical encounter.

Cluster cosmology with next-generation surveys.

Science.gov (United States)

Ascaso, B.

2017-03-01

The advent of next-generation surveys will provide a large number of cluster detections that will serve the basis for constraining cos mological parameters using cluster counts. The main two observational ingredients needed are the cluster selection function and the calibration of the mass-observable relation. In this talk, we present the methodology designed to obtain robust predictions of both ingredients based on realistic cosmological simulations mimicking the following next-generation surveys: J-PAS, LSST and Euclid. We display recent results on the selection functions for these mentioned surveys together with others coming from other next-generation surveys such as eROSITA, ACTpol and SPTpol. We notice that the optical and IR surveys will reach the lowest masses between 0.3surveys and introduce very preliminary results.

The SOAR Gravitational Arc Survey – I. Survey overview and photometric catalogues

Energy Technology Data Exchange (ETDEWEB)

Furlanetto, Cristina; Santiago, Basílio X.; Makler, Martín; Cypriano, Eduardo S.; Caminha, Gabriel B.; Pereira, Maria E. S.; Neto, Angelo Fausti; Estrada, Juan; Lin, Huan; Hao, Jiangang; McKay, Timothy A.; da Costa, Luiz N.; Maia, Marcio A. G.

2013-04-11

We present the first results of the SOAR (Southern Astrophysical Research) Gravitational Arc Survey (SOGRAS). The survey imaged 47 clusters in two redshift intervals centered at $z=0.27$ and $z=0.55$, targeting the richest clusters in each interval. Images were obtained in the $g'$, $r'$ and $i'$ bands using the SOAR Optical Imager (SOI), with a median seeing of 0.83, 0.76 and 0.71 arcsec, respectively, in these filters. Most of the survey clusters are located within the Sloan Digital Sky Survey (SDSS) Stripe 82 region and all of them are in the SDSS footprint. Photometric calibration was therefore performed using SDSS stars located in our SOI fields. We reached for galaxies in all fields the detection limits of $g \\sim 23.5$, $r \\sim 23$ and $i \\sim 22.5$ for a signal-to-noise ratio (S/N) = 3. As a by-product of the image processing, we generated a source catalogue with 19760 entries, the vast majority of which are galaxies, where we list their positions, magnitudes and shape parameters. We compared our galaxy shape measurements to those of local galaxies and concluded that they were not strongly affected by seeing. From the catalogue data, we are able to identify a red sequence of galaxies in most clusters in the lower $z$ range. We found 16 gravitational arc candidates around 8 clusters in our sample. They tend to be bluer than the central galaxies in the lensing cluster. A preliminary analysis indicates that $\\sim 10%$ of the clusters have arcs around them, with a possible indication of a larger efficiency associated to the high-$z$ systems when compared to the low-$z$ ones. Deeper follow-up images with Gemini strengthen the case for the strong lensing nature of the candidates found in this survey.

Ultra-fast sequence clustering from similarity networks with SiLiX

Directory of Open Access Journals (Sweden)

Duret Laurent

2011-04-01

Full Text Available Abstract Background The number of gene sequences that are available for comparative genomics approaches is increasing extremely quickly. A current challenge is to be able to handle this huge amount of sequences in order to build families of homologous sequences in a reasonable time. Results We present the software package SiLiX that implements a novel method which reconsiders single linkage clustering with a graph theoretical approach. A parallel version of the algorithms is also presented. As a demonstration of the ability of our software, we clustered more than 3 millions sequences from about 2 billion BLAST hits in 7 minutes, with a high clustering quality, both in terms of sensitivity and specificity. Conclusions Comparing state-of-the-art software, SiLiX presents the best up-to-date capabilities to face the problem of clustering large collections of sequences. SiLiX is freely available at http://lbbe.univ-lyon1.fr/SiLiX.

Galaxy clusters in the cosmic web

Science.gov (United States)

Acebrón, A.; Durret, F.; Martinet, N.; Adami, C.; Guennou, L.

2014-12-01

Simulations of large scale structure formation in the universe predict that matter is essentially distributed along filaments at the intersection of which lie galaxy clusters. We have analysed 9 clusters in the redshift range 0.4DAFT/FADA survey, which combines deep large field multi-band imaging and spectroscopic data, in order to detect filaments and/or structures around these clusters. Based on colour-magnitude diagrams, we have selected the galaxies likely to be in the cluster redshift range and studied their spatial distribution. We detect a number of structures and filaments around several clusters, proving that colour-magnitude diagrams are a reliable method to detect filaments around galaxy clusters. Since this method excludes blue (spiral) galaxies at the cluster redshift, we also apply the LePhare software to compute photometric redshifts from BVRIZ images to select galaxy cluster members and study their spatial distribution. We then find that, if only galaxies classified as early-type by LePhare are considered, we obtain the same distribution than with a red sequence selection, while taking into account late-type galaxies just pollutes the background level and deteriorates our detections. The photometric redshift based method therefore does not provide any additional information.

A single population of red globular clusters around the massive compact galaxy NGC 1277

Science.gov (United States)

Beasley, Michael A.; Trujillo, Ignacio; Leaman, Ryan; Montes, Mireia

2018-03-01

Massive galaxies are thought to form in two phases: an initial collapse of gas and giant burst of central star formation, followed by the later accretion of material that builds up their stellar and dark-matter haloes. The systems of globular clusters within such galaxies are believed to form in a similar manner. The initial central burst forms metal-rich (spectrally red) clusters, whereas more metal-poor (spectrally blue) clusters are brought in by the later accretion of less-massive satellites. This formation process is thought to result in the multimodal optical colour distributions that are seen in the globular cluster systems of massive galaxies. Here we report optical observations of the massive relic-galaxy candidate NGC 1277—a nearby, un-evolved example of a high-redshift ‘red nugget’ galaxy. We find that the optical colour distribution of the cluster system of NGC 1277 is unimodal and entirely red. This finding is in strong contrast to other galaxies of similar and larger stellar mass, the cluster systems of which always exhibit (and are generally dominated by) blue clusters. We argue that the colour distribution of the cluster system of NGC 1277 indicates that the galaxy has undergone little (if any) mass accretion after its initial collapse, and use simulations of possible merger histories to show that the stellar mass due to accretion is probably at most ten per cent of the total stellar mass of the galaxy. These results confirm that NGC 1277 is a genuine relic galaxy and demonstrate that blue clusters constitute an accreted population in present-day massive galaxies.

The FIRST-2MASS Red Quasar Survey

International Nuclear Information System (INIS)

Glikman, E; Helfand, D J; White, R L; Becker, R H; Gregg, M D; Lacy, M

2007-01-01

Combining radio observations with optical and infrared color selection--demonstrated in our pilot study to be an efficient selection algorithm for finding red quasars--we have obtained optical and infrared spectroscopy for 120 objects in a complete sample of 156 candidates from a sky area of 2716 square degrees. Consistent with our initial results, we find our selection criteria--J-K > 1.7,R-K > 4.0--yield a ∼ 50% success rate for discovering quasars substantially redder than those found in optical surveys. Comparison with UVX- and optical color-selected samples shows that ∼> 10% of the quasars are missed in a magnitude-limited survey. Simultaneous two-frequency radio observations for part of the sample indicate that a synchrotron continuum component is ruled out as a significant contributor to reddening the quasars spectra. We go on to estimate extinctions for our objects assuming their red colors are caused by dust. Continuum fits and Balmer decrements suggest E(B-V) values ranging from near zero to 2.5 magnitudes. Correcting the K-band magnitudes for these extinctions, we find that for K (le) 14.0, red quasars make up between 25% and 60% of the underlying quasar population; owing to the incompleteness of the 2MASS survey at fainter K-band magnitudes, we can only set a lower limit to the radio-detected red quasar population of > 20-30%

Descriptor Fingerprints and Their Application to Red Wine Clustering and Discrimination

Science.gov (United States)

Bangov, I. P.; Moskovkina, M.; Stojanov, B. P.

2017-03-01

The investigation was performed to test the potentials of the fingerprint clustering algorithm for a set of 1599 red wines in relation to some wine properties, comprised in the notion "wine quality". We have obtained a distribution of the wines into different clusters as a result. Each cluster was composed of wine-objects with similar values of laboratory parameters and with a wine quality certificate. A correlation between the. quality of wines (a sensory taste factor) and the phisicochemical descriptors (laboratory analytical test results data) was observed and analyzed.

Descriptor Fingerprints and Their Application to Red Wine Clustering and Discrimination

Directory of Open Access Journals (Sweden)

Bangov I.P.

2017-03-01

Full Text Available The investigation was performed to test the potentials of the fingerprint clustering algorithm for a set of 1599 red wines in relation to some wine properties, comprised in the notion “wine quality”. We have obtained a distribution of the wines into different clusters as a result. Each cluster was composed of wine-objects with similar values of laboratory parameters and with a wine quality certificate. A correlation between the. quality of wines (a sensory taste factor and the phisicochemical descriptors (laboratory analytical test results data was observed and analyzed.

Theoretical red-giant branches for globular clusters

International Nuclear Information System (INIS)

VandenBerg, D.A.

1984-01-01

The authors reports computations of stellar evolutionary sequences from the base of the red-giant branch to the helium flash. Representative models with masses in the range of 0.8 to 0.9 solar masses were selected in order that the stars on the giant branches had ages of approximately 16 billion yr. Initial numerical experiments indicated that a value of α = 1.6 for the ratio of the mixing length to the pressure scale height was needed to provide the best of the Z = 0.0001 model sequence with the observations of M92. Sequences for the other assumed metallicities, Z = 0.0003, 0.001, 0.003, and 0.006, were then computed for the same value of the mixing-length parameter and overlayed directly on the observations. (Auth.)

Red but not dead: unveiling the star-forming far-infrared spectral energy distribution of SpARCS brightest cluster galaxies at 0 < z < 1.8

Science.gov (United States)

Bonaventura, N. R.; Webb, T. M. A.; Muzzin, A.; Noble, A.; Lidman, C.; Wilson, G.; Yee, H. K. C.; Geach, J.; Hezaveh, Y.; Shupe, D.; Surace, J.

2017-08-01

We present the results of a Spitzer/Herschel infrared photometric analysis of the largest (716) and the highest-redshift (z = 1.8) sample of brightest cluster galaxies (BCGs), those from the Spitzer Adaptation of the Red-Sequence Cluster Survey Given the tension that exists between model predictions and recent observations of BCGs at z energy distributions (SEDs) to a variety of model templates in the literature, we identify the major sources of their infrared energy output, in multiple redshift bins between 0 solar masses per year down to z = 0.5. This discovery challenges the accepted belief that BCGs should only passively evolve through a series of gas-poor, minor mergers since z ˜ 4, but agrees with an improved semi-analytic model of hierarchical structure formation that predicts star-forming BCGs throughout the epoch considered. We attribute the star formation inferred from the stacked infrared SEDs to both major and minor 'wet' (gas-rich) mergers, based on a lack of key signatures (to date) of cooling-flow-induced star formation, as well as a number of observational and simulation-based studies that support this scenario.

The swift UVOT stars survey. I. Methods and test clusters

Energy Technology Data Exchange (ETDEWEB)

Siegel, Michael H.; Porterfield, Blair L.; Linevsky, Jacquelyn S.; Bond, Howard E.; Hoversten, Erik A.; Berrier, Joshua L.; Gronwall, Caryl A. [Department of Astronomy and Astrophysics, The Pennsylvania State University, 525 Davey Laboratory, University Park, PA 16802 (United States); Holland, Stephen T. [Space Telescope Science Institute, 3700 San Martin Drive, Baltimore, MD 21218 (United States); Breeveld, Alice A. [Mullard Space Science Laboratory, University College London, Holmbury St. Mary, Dorking, Surrey RH5 6NT (United Kingdom); Brown, Peter J., E-mail: siegel@astro.psu.edu, E-mail: blp14@psu.edu, E-mail: heb11@psu.edu, E-mail: caryl@astro.psu.edu, E-mail: sholland@stsci.edu, E-mail: aab@mssl.ucl.ac.uk, E-mail: grbpeter@yahoo.com [George P. and Cynthia Woods Mitchell Institute for Fundamental Physics and Astronomy, Texas A. and M. University, Department of Physics and Astronomy, 4242 TAMU, College Station, TX 77843 (United States)

2014-12-01

We describe the motivations and background of a large survey of nearby stellar populations using the Ultraviolet Optical Telescope (UVOT) on board the Swift Gamma-Ray Burst Mission. UVOT, with its wide field, near-UV sensitivity, and 2.″3 spatial resolution, is uniquely suited to studying nearby stellar populations and providing insight into the near-UV properties of hot stars and the contribution of those stars to the integrated light of more distant stellar populations. We review the state of UV stellar photometry, outline the survey, and address problems specific to wide- and crowded-field UVOT photometry. We present color–magnitude diagrams of the nearby open clusters M67, NGC 188, and NGC 2539, and the globular cluster M79. We demonstrate that UVOT can easily discern the young- and intermediate-age main sequences, blue stragglers, and hot white dwarfs, producing results consistent with previous studies. We also find that it characterizes the blue horizontal branch of M79 and easily identifies a known post-asymptotic giant branch star.

The swift UVOT stars survey. I. Methods and test clusters

International Nuclear Information System (INIS)

Siegel, Michael H.; Porterfield, Blair L.; Linevsky, Jacquelyn S.; Bond, Howard E.; Hoversten, Erik A.; Berrier, Joshua L.; Gronwall, Caryl A.; Holland, Stephen T.; Breeveld, Alice A.; Brown, Peter J.

2014-01-01

We describe the motivations and background of a large survey of nearby stellar populations using the Ultraviolet Optical Telescope (UVOT) on board the Swift Gamma-Ray Burst Mission. UVOT, with its wide field, near-UV sensitivity, and 2.″3 spatial resolution, is uniquely suited to studying nearby stellar populations and providing insight into the near-UV properties of hot stars and the contribution of those stars to the integrated light of more distant stellar populations. We review the state of UV stellar photometry, outline the survey, and address problems specific to wide- and crowded-field UVOT photometry. We present color–magnitude diagrams of the nearby open clusters M67, NGC 188, and NGC 2539, and the globular cluster M79. We demonstrate that UVOT can easily discern the young- and intermediate-age main sequences, blue stragglers, and hot white dwarfs, producing results consistent with previous studies. We also find that it characterizes the blue horizontal branch of M79 and easily identifies a known post-asymptotic giant branch star.

GALAXY CLUSTERS AT HIGH REDSHIFT AND EVOLUTION OF BRIGHTEST CLUSTER GALAXIES

International Nuclear Information System (INIS)

Wen, Z. L.; Han, J. L.

2011-01-01

Identification of high-redshift clusters is important for studies of cosmology and cluster evolution. Using photometric redshifts of galaxies, we identify 631 clusters from the Canada-France-Hawaii Telescope (CFHT) wide field, 202 clusters from the CFHT deep field, 187 clusters from the Cosmic Evolution Survey (COSMOS) field, and 737 clusters from the Spitzer Wide-area InfraRed Extragalactic Survey (SWIRE) field. The redshifts of these clusters are in the range 0.1 ∼ + - m 3.6 μ m colors of the BCGs are consistent with a stellar population synthesis model in which the BCGs are formed at redshift z f ≥ 2 and evolved passively. The g' - z' and B - m 3.6μm colors of the BCGs at redshifts z > 0.8 are systematically bluer than the passive evolution model for galaxies formed at z f ∼ 2, indicating star formation in high-redshift BCGs.

Do satellite galaxies trace matter in galaxy clusters?

Science.gov (United States)

Wang, Chunxiang; Li, Ran; Gao, Liang; Shan, Huanyuan; Kneib, Jean-Paul; Wang, Wenting; Chen, Gang; Makler, Martin; Pereira, Maria E. S.; Wang, Lin; Maia, Marcio A. G.; Erben, Thomas

2018-04-01

The spatial distribution of satellite galaxies encodes rich information of the structure and assembly history of galaxy clusters. In this paper, we select a red-sequence Matched-filter Probabilistic Percolation cluster sample in SDSS Stripe 82 region with 0.1 ≤ z ≤ 0.33, 20 0.7. Using the high-quality weak lensing data from CS82 Survey, we constrain the mass profile of this sample. Then we compare directly the mass density profile with the satellite number density profile. We find that the total mass and number density profiles have the same shape, both well fitted by an NFW profile. The scale radii agree with each other within a 1σ error (r_s,gal=0.34_{-0.03}^{+0.04} Mpc versus r_s=0.37_{-0.10}^{+0.15} Mpc).

LoCuSS: weak-lensing mass calibration of galaxy clusters

Science.gov (United States)

Okabe, Nobuhiro; Smith, Graham P.

2016-10-01

We present weak-lensing mass measurements of 50 X-ray luminous galaxy clusters at 0.15 ≤ z ≤ 0.3, based on uniform high-quality observations with Suprime-Cam mounted on the 8.2-m Subaru telescope. We pay close attention to possible systematic biases, aiming to control them at the ≲4 per cent level. The dominant source of systematic bias in weak-lensing measurements of the mass of individual galaxy clusters is contamination of background galaxy catalogues by faint cluster and foreground galaxies. We extend our conservative method for selecting background galaxies with (V - I') colours redder than the red sequence of cluster members to use a colour-cut that depends on cluster-centric radius. This allows us to define background galaxy samples that suffer ≤1 per cent contamination, and comprise 13 galaxies per square arcminute. Thanks to the purity of our background galaxy catalogue, the largest systematic that we identify in our analysis is a shape measurement bias of 3 per cent, that we measure using simulations that probe weak shears up to g = 0.3. Our individual cluster mass and concentration measurements are in excellent agreement with predictions of the mass-concentration relation. Equally, our stacked shear profile is in excellent agreement with the Navarro Frenk and White profile. Our new Local Cluster Substructure Survey mass measurements are consistent with the Canadian Cluster Cosmology Project and Cluster Lensing And Supernova Survey with Hubble surveys, and in tension with the Weighing the Giants at ˜1σ-2σ significance. Overall, the consensus at z ≤ 0.3 that is emerging from these complementary surveys represents important progress for cluster mass calibration, and augurs well for cluster cosmology.

THE MASSIVE DISTANT CLUSTERS OF WISE SURVEY: THE FIRST DISTANT GALAXY CLUSTER DISCOVERED BY WISE

International Nuclear Information System (INIS)

Gettings, Daniel P.; Gonzalez, Anthony H.; Mancone, Conor; Stanford, S. Adam; Eisenhardt, Peter R. M.; Stern, Daniel; Brodwin, Mark; Zeimann, Gregory R.; Masci, Frank J.; Papovich, Casey; Tanaka, Ichi; Wright, Edward L.

2012-01-01

We present spectroscopic confirmation of a z = 0.99 galaxy cluster discovered using data from the Wide-field Infrared Survey Explorer (WISE). This is the first z ∼ 1 cluster candidate from the Massive Distant Clusters of WISE Survey to be confirmed. It was selected as an overdensity of probable z ∼> 1 sources using a combination of WISE and Sloan Digital Sky Survey DR8 photometric catalogs. Deeper follow-up imaging data from Subaru and WIYN reveal the cluster to be a rich system of galaxies, and multi-object spectroscopic observations from Keck confirm five cluster members at z = 0.99. The detection and confirmation of this cluster represents a first step toward constructing a uniformly selected sample of distant, high-mass galaxy clusters over the full extragalactic sky using WISE data.

Cluster growing process and a sequence of magic numbers

DEFF Research Database (Denmark)

Solov'yov, Ilia; Solov'yov, Andrey V.; Greiner, Walter

2003-01-01

demonstrate that in this way all known global minimum structures of the Lennard-Jones (LJ) clusters can be found. Our method provides an efficient tool for the calculation and analysis of atomic cluster structure. With its use we justify the magic number sequence for the clusters of noble gas atoms......We present a new theoretical framework for modeling the cluster growing process. Starting from the initial tetrahedral cluster configuration, adding new atoms to the system, and absorbing its energy at each step, we find cluster growing paths up to the cluster sizes of more than 100 atoms. We...

LENSING NOISE IN MILLIMETER-WAVE GALAXY CLUSTER SURVEYS

International Nuclear Information System (INIS)

Hezaveh, Yashar; Vanderlinde, Keith; Holder, Gilbert; De Haan, Tijmen

2013-01-01

We study the effects of gravitational lensing by galaxy clusters of the background of dusty star-forming galaxies (DSFGs) and the cosmic microwave background (CMB), and examine the implications for Sunyaev-Zel'dovich-based (SZ) galaxy cluster surveys. At the locations of galaxy clusters, gravitational lensing modifies the probability distribution of the background flux of the DSFGs as well as the CMB. We find that, in the case of a single-frequency 150 GHz survey, lensing of DSFGs leads both to a slight increase (∼10%) in detected cluster number counts (due to a ∼50% increase in the variance of the DSFG background, and hence an increased Eddington bias) and a rare (occurring in ∼2% of clusters) 'filling-in' of SZ cluster signals by bright strongly lensed background sources. Lensing of the CMB leads to a ∼55% reduction in CMB power at the location of massive galaxy clusters in a spatially matched single-frequency filter, leading to a net decrease in detected cluster number counts. We find that the increase in DSFG power and decrease in CMB power due to lensing at cluster locations largely cancel, such that the net effect on cluster number counts for current SZ surveys is subdominant to Poisson errors

Defining reference sequences for Nocardia species by similarity and clustering analyses of 16S rRNA gene sequence data.

Directory of Open Access Journals (Sweden)

Manal Helal

Full Text Available BACKGROUND: The intra- and inter-species genetic diversity of bacteria and the absence of 'reference', or the most representative, sequences of individual species present a significant challenge for sequence-based identification. The aims of this study were to determine the utility, and compare the performance of several clustering and classification algorithms to identify the species of 364 sequences of 16S rRNA gene with a defined species in GenBank, and 110 sequences of 16S rRNA gene with no defined species, all within the genus Nocardia. METHODS: A total of 364 16S rRNA gene sequences of Nocardia species were studied. In addition, 110 16S rRNA gene sequences assigned only to the Nocardia genus level at the time of submission to GenBank were used for machine learning classification experiments. Different clustering algorithms were compared with a novel algorithm or the linear mapping (LM of the distance matrix. Principal Components Analysis was used for the dimensionality reduction and visualization. RESULTS: The LM algorithm achieved the highest performance and classified the set of 364 16S rRNA sequences into 80 clusters, the majority of which (83.52% corresponded with the original species. The most representative 16S rRNA sequences for individual Nocardia species have been identified as 'centroids' in respective clusters from which the distances to all other sequences were minimized; 110 16S rRNA gene sequences with identifications recorded only at the genus level were classified using machine learning methods. Simple kNN machine learning demonstrated the highest performance and classified Nocardia species sequences with an accuracy of 92.7% and a mean frequency of 0.578. CONCLUSION: The identification of centroids of 16S rRNA gene sequence clusters using novel distance matrix clustering enables the identification of the most representative sequences for each individual species of Nocardia and allows the quantitation of inter- and intra

Genome cluster database. A sequence family analysis platform for Arabidopsis and rice.

Science.gov (United States)

Horan, Kevin; Lauricha, Josh; Bailey-Serres, Julia; Raikhel, Natasha; Girke, Thomas

2005-05-01

The genome-wide protein sequences from Arabidopsis (Arabidopsis thaliana) and rice (Oryza sativa) spp. japonica were clustered into families using sequence similarity and domain-based clustering. The two fundamentally different methods resulted in separate cluster sets with complementary properties to compensate the limitations for accurate family analysis. Functional names for the identified families were assigned with an efficient computational approach that uses the description of the most common molecular function gene ontology node within each cluster. Subsequently, multiple alignments and phylogenetic trees were calculated for the assembled families. All clustering results and their underlying sequences were organized in the Web-accessible Genome Cluster Database (http://bioinfo.ucr.edu/projects/GCD) with rich interactive and user-friendly sequence family mining tools to facilitate the analysis of any given family of interest for the plant science community. An automated clustering pipeline ensures current information for future updates in the annotations of the two genomes and clustering improvements. The analysis allowed the first systematic identification of family and singlet proteins present in both organisms as well as those restricted to one of them. In addition, the established Web resources for mining these data provide a road map for future studies of the composition and structure of protein families between the two species.

Open-Source Sequence Clustering Methods Improve the State Of the Art.

Science.gov (United States)

Kopylova, Evguenia; Navas-Molina, Jose A; Mercier, Céline; Xu, Zhenjiang Zech; Mahé, Frédéric; He, Yan; Zhou, Hong-Wei; Rognes, Torbjørn; Caporaso, J Gregory; Knight, Rob

2016-01-01

Sequence clustering is a common early step in amplicon-based microbial community analysis, when raw sequencing reads are clustered into operational taxonomic units (OTUs) to reduce the run time of subsequent analysis steps. Here, we evaluated the performance of recently released state-of-the-art open-source clustering software products, namely, OTUCLUST, Swarm, SUMACLUST, and SortMeRNA, against current principal options (UCLUST and USEARCH) in QIIME, hierarchical clustering methods in mothur, and USEARCH's most recent clustering algorithm, UPARSE. All the latest open-source tools showed promising results, reporting up to 60% fewer spurious OTUs than UCLUST, indicating that the underlying clustering algorithm can vastly reduce the number of these derived OTUs. Furthermore, we observed that stringent quality filtering, such as is done in UPARSE, can cause a significant underestimation of species abundance and diversity, leading to incorrect biological results. Swarm, SUMACLUST, and SortMeRNA have been included in the QIIME 1.9.0 release. IMPORTANCE Massive collections of next-generation sequencing data call for fast, accurate, and easily accessible bioinformatics algorithms to perform sequence clustering. A comprehensive benchmark is presented, including open-source tools and the popular USEARCH suite. Simulated, mock, and environmental communities were used to analyze sensitivity, selectivity, species diversity (alpha and beta), and taxonomic composition. The results demonstrate that recent clustering algorithms can significantly improve accuracy and preserve estimated diversity without the application of aggressive filtering. Moreover, these tools are all open source, apply multiple levels of multithreading, and scale to the demands of modern next-generation sequencing data, which is essential for the analysis of massive multidisciplinary studies such as the Earth Microbiome Project (EMP) (J. A. Gilbert, J. K. Jansson, and R. Knight, BMC Biol 12:69, 2014, http

Portuguese Lexical Clusters and CVC Sequences in Speech Perception and Production.

Science.gov (United States)

Cunha, Conceição

2015-01-01

This paper investigates similarities between lexical consonant clusters and CVC sequences differing in the presence or absence of a lexical vowel in speech perception and production in two Portuguese varieties. The frequent high vowel deletion in the European variety (EP) and the realization of intervening vocalic elements between lexical clusters in Brazilian Portuguese (BP) may minimize the contrast between lexical clusters and CVC sequences in the two Portuguese varieties. In order to test this hypothesis we present a perception experiment with 72 participants and a physiological analysis of 3-dimensional movement data from 5 EP and 4 BP speakers. The perceptual results confirmed a gradual confusion of lexical clusters and CVC sequences in EP, which corresponded roughly to the gradient consonantal overlap found in production. © 2015 S. Karger AG, Basel.

THE BOTTOM OF THE WHITE DWARF COOLING SEQUENCE IN THE OLD OPEN CLUSTER NGC 2158

International Nuclear Information System (INIS)

Bedin, L. R.; Anderson, J.; Salaris, M.; King, I. R.; Piotto, G.; Cassisi, S.

2010-01-01

We use 10 orbits of Advanced Camera for Surveys observations to reach the end of the white dwarf (WD) cooling sequence in the solar-metallicity open cluster NGC 2158. Our photometry and completeness tests show that the end falls at magnitude m F606W = 27.5 ± 0.15, which implies an age between ∼1.8 and ∼2.0 Gyr, consistent with the age of 1.9 ± 0.2 Gyr obtained from fits to the main-sequence turn-off. The faintest WDs show a clear turn toward bluer colors, as predicted by theoretical isochrones.

Comparative analysis of myostatin gene and promoter sequences of Qinchuan and Red Angus cattle.

Science.gov (United States)

He, Y L; Wu, Y H; Quan, F S; Liu, Y G; Zhang, Y

2013-09-04

To better understand the function of the myostatin gene and its promoter region in bovine, we amplified and sequenced the myostatin gene and promoter from the blood of Qinchuan and Red Angus cattle by using polymerase chain reaction. The sequences of Qinchuan and Red Angus cattle were compared with those of other cattle breeds available in GenBank. Exon splice sites were confirmed by mRNA sequencing. Compared to the published sequence (GenBank accession No. AF320998), 69 single nucleotide polymorphisms (SNPs) were identified in the Qinchuan myostatin gene, only one of which was an insertion mutation in Qinchuan cattle. There was a 16-bp insertion in the first 705-bp intron in 3 Qinchuan cattle. A total of 7 SNPs were identified in exon 3, in which the mutation occurred in the third base of the codon and was synonymous. On comparing the Qinchuan myostatin gene sequence to that of Red Angus cattle, a total of 50 SNPs were identified in the first and third exons. In addition, there were 18 SNPs identified in the Qinchuan cattle promoter region compared with those of other cattle compared to the Red Angus cattle myostatin promoter region. breeds (GenBank accession No. AF348479), but only 14 SNPs when compared to the Red Angus cattle myostatin promoter region.

A spectroscopic survey of EC4, an extended cluster in Andromeda's halo

Science.gov (United States)

Collins, M. L. M.; Chapman, S. C.; Irwin, M.; Ibata, R.; Martin, N. F.; Ferguson, A. M. N.; Huxor, A.; Lewis, G. F.; Mackey, A. D.; McConnachie, A. W.; Tanvir, N.

2009-07-01

We present a spectroscopic survey of candidate red giant branch stars in the extended star cluster, EC4, discovered in the halo of M31 from our Canada-France-Hawaii Telescope/MegaCam survey, overlapping the tidal streams, Streams`Cp' and `Cr'. These observations used the DEep Imaging Multi-Object Spectrograph mounted on the Keck II telescope to obtain spectra around the CaII triplet region with ~1.3 Å resolution. Six stars lying on the red giant branch within two core radii of the centre of EC4 are found to have an average vr = -287.9+1.9-2.4kms-1 and σv,corr = 2.7+4.2-2.7kms-1, taking instrumental errors into account. The resulting mass-to-light ratio for EC4 is M/L = 6.7+15-6.7Msolar/Lsolar, a value that is consistent with a globular cluster within the 1σ errors we derive. From the summed spectra of our member stars, we find EC4 to be metal-poor, with [Fe/H] = -1.6 +/- 0.15. We discuss several formation and evolution scenarios which could account for our kinematic and metallicity constraints on EC4, and conclude that EC4 is most comparable with an extended globular cluster. We also compare the kinematics and metallicity of EC4 with Streams `Cp' and`Cr', and find that EC4 bears a striking resemblance to Stream`Cp' in terms of velocity, and that the two structures are identical in terms of both their spectroscopic and photometric metallicities. From this, we conclude that EC4 is likely related to Stream`Cp'. The data presented herein were obtained at the W.M. Keck Observatory, which is operated as a scientific partnership among the California Institute of Technology, the University of California and the National Aeronautics and Space Administration. The Observatory was made possible by the generous financial support of the W.M. Keck Foundation. E-mail: mlmc2@ast.cam.ac.uk

Red Clump stars in Kepler open cluster NGC 6819

Directory of Open Access Journals (Sweden)

Abedigamba O.P.

2015-01-01

Full Text Available We measure the large frequency separation, Δν, and the frequency of maximum amplitude, νmax, for 10 Red Clump (RC single member (SM stars in the Kepler open cluster NGC 6819. We derive luminosities and masses for each individual RC star. A comparison of the observations with an isochrone of Age = 2.5 Gyr, Z = 0.017 with no mass loss using a statistical techniques is made. A fractional mass loss of 5 ± 3 percent is obtained if we assume that no correction to Δν between RC and red-giant branch (RGB is necessary. However, models suggest that an effective correction of about 1.9 percent in Δν is required to obtain the correct mass of RC stars owing to the different internal structures of stars in the two evolutionary stages. In this case we find that the mass loss in the red giant branch is not significantly different from zero. This finding confirms that of [6]. It is clear that the mass estimate obtained by asteroseismology is not sufficient to deduce the mass loss on the red giant branch. However, it is clearly only a few percent at most.

YOUNG STELLAR CLUSTERS CONTAINING MASSIVE YOUNG STELLAR OBJECTS IN THE VVV SURVEY

Energy Technology Data Exchange (ETDEWEB)

Borissova, J.; Alegría, S. Ramírez; Kurtev, R.; Medina, N.; Navarro, C.; Kuhn, M.; Gromadzki, M.; Retamales, G.; Fernandez, M. A.; Agurto-Gangas, C.; Amigo, P. [Instituto de Física y Astronomía, Universidad de Valparaíso, Av. Gran Bretaña 1111, Playa Ancha, Casilla 5030 (Chile); Alonso, J.; Decany, I. [Millennium Institute of Astrophysics (MAS), Santiago (Chile); Lucas, P. W.; Pena, C. Contreras; Thompson, M. A. [Centre for Astrophysics Research, Science and Technology Research Institute, University of Hertfordshire, Hatfield AL10 9AB (United Kingdom); Chené, A.-N. [Gemini Observatory, Northern Operations Center, 670 N. A’ohoku Place, Hilo, HI 96720 (United States); Minniti, D. [Departamento de Ciencias Físicas, Universidad Andres Bello, Republica 220, Santiago (Chile); Catelan, M. [Instituto de Astrofísica, Facultad de Física, Pontificia Universidad Católica de Chile, Casilla 306, Santiago 22 (Chile); Morales, E. F. E., E-mail: jura.borissova@uv.cl [Max-Planck-Institute for Astronomy (Germany)

2016-09-01

The purpose of this research is to study the connections of the global properties of eight young stellar clusters projected in the Vista Variables in the Via Lactea (VVV) ESO Large Public Survey disk area and their young stellar object (YSO) populations. The analysis is based on the combination of spectroscopic parallax-based reddening and distance determinations with main-sequence and pre-main-sequence ishochrone fitting to determine the basic parameters (reddening, age, distance) of the sample clusters. The lower mass limit estimations show that all clusters are low or intermediate mass (between 110 and 1800  M {sub ⊙}), the slope Γ of the obtained present-day mass functions of the clusters is close to the Kroupa initial mass function. The YSOs in the cluster’s surrounding fields are classified using low resolution spectra, spectral energy distribution fits with theoretical predictions, and variability, taking advantage of multi-epoch VVV observations. All spectroscopically confirmed YSOs (except one) are found to be massive (more than 8 M {sub ⊙}). Using VVV and GLIMPSE color–color cuts we have selected a large number of new YSO candidates, which are checked for variability and 57% are found to show at least low-amplitude variations. In few cases it was possible to distinguish between YSO and AGB classifications on the basis of light curves.

Network clustering coefficient approach to DNA sequence analysis

Energy Technology Data Exchange (ETDEWEB)

Gerhardt, Guenther J.L. [Universidade Federal do Rio Grande do Sul-Hospital de Clinicas de Porto Alegre, Rua Ramiro Barcelos 2350/sala 2040/90035-003 Porto Alegre (Brazil); Departamento de Fisica e Quimica da Universidade de Caxias do Sul, Rua Francisco Getulio Vargas 1130, 95001-970 Caxias do Sul (Brazil); Lemke, Ney [Programa Interdisciplinar em Computacao Aplicada, Unisinos, Av. Unisinos, 950, 93022-000 Sao Leopoldo, RS (Brazil); Corso, Gilberto [Departamento de Biofisica e Farmacologia, Centro de Biociencias, Universidade Federal do Rio Grande do Norte, Campus Universitario, 59072 970 Natal, RN (Brazil)]. E-mail: corso@dfte.ufrn.br

2006-05-15

In this work we propose an alternative DNA sequence analysis tool based on graph theoretical concepts. The methodology investigates the path topology of an organism genome through a triplet network. In this network, triplets in DNA sequence are vertices and two vertices are connected if they occur juxtaposed on the genome. We characterize this network topology by measuring the clustering coefficient. We test our methodology against two main bias: the guanine-cytosine (GC) content and 3-bp (base pairs) periodicity of DNA sequence. We perform the test constructing random networks with variable GC content and imposed 3-bp periodicity. A test group of some organisms is constructed and we investigate the methodology in the light of the constructed random networks. We conclude that the clustering coefficient is a valuable tool since it gives information that is not trivially contained in 3-bp periodicity neither in the variable GC content.

Satellite DNA Sequences in Canidae and Their Chromosome Distribution in Dog and Red Fox.

Science.gov (United States)

Vozdova, Miluse; Kubickova, Svatava; Cernohorska, Halina; Fröhlich, Jan; Rubes, Jiri

2016-01-01

Satellite DNA is a characteristic component of mammalian centromeric heterochromatin, and a comparative analysis of its evolutionary dynamics can be used for phylogenetic studies. We analysed satellite and satellite-like DNA sequences available in NCBI for 4 species of the family Canidae (red fox, Vulpes vulpes, VVU; domestic dog, Canis familiaris, CFA; arctic fox, Vulpes lagopus, VLA; raccoon dog, Nyctereutes procyonoides procyonoides, NPR) by comparative sequence analysis, which revealed 86-90% intraspecies and 76-79% interspecies similarity. Comparative fluorescence in situ hybridisation in the red fox and dog showed signals of the red fox satellite probe in canine and vulpine autosomal centromeres, on VVUY, B chromosomes, and in the distal parts of VVU9q and VVU10p which were shown to contain nucleolus organiser regions. The CFA satellite probe stained autosomal centromeres only in the dog. The CFA satellite-like DNA did not show any significant sequence similarity with the satellite DNA of any species analysed and was localised to the centromeres of 9 canine chromosome pairs. No significant heterochromatin block was detected on the B chromosomes of the red fox. Our results show extensive heterogeneity of satellite sequences among Canidae and prove close evolutionary relationships between the red and arctic fox. © 2017 S. Karger AG, Basel.

The Not So Simple Globular Cluster ω Cen. I. Spatial Distribution of the Multiple Stellar Populations

Energy Technology Data Exchange (ETDEWEB)

Calamida, A.; Saha, A. [National Optical Astronomy Observatory—AURA, 950 N Cherry Avenue, Tucson, AZ, 85719 (United States); Strampelli, G.; Rest, A. [Space Telescope Science Institute—AURA, 3700 San Martin Drive, Baltimore, MD 21218 (United States); Bono, G.; Ferraro, I.; Iannicola, G. [INAF—Osservatorio Astronomico di Roma—Via Frascati 33, I-00040, Monteporzio Catone, Rome (Italy); Scolnic, D. [The University of Chicago, The Kavli Institute for Cosmological Physics, William Eckhardt Research Center—Suite 499, 5640 South Ellis Avenue, Chicago, IL 60637 (United States); James, D.; Smith, C.; Zenteno, A., E-mail: calamida@noao.edu [Cerro Tololo Inter-American Observatory, Casilla 603, La Serena (Chile)

2017-04-01

We present a multi-band photometric catalog of ≈1.7 million cluster members for a field of view of ≈2° × 2° across ω Cen. Photometry is based on images collected with the Dark Energy Camera on the 4 m Blanco telescope and the Advanced Camera for Surveys on the Hubble Space Telescope . The unprecedented photometric accuracy and field coverage allowed us, for the first time, to investigate the spatial distribution of ω Cen multiple populations from the core to the tidal radius, confirming its very complex structure. We found that the frequency of blue main-sequence stars is increasing compared to red main-sequence stars starting from a distance of ≈25′ from the cluster center. Blue main-sequence stars also show a clumpy spatial distribution, with an excess in the northeast quadrant of the cluster pointing toward the direction of the Galactic center. Stars belonging to the reddest and faintest red-giant branch also show a more extended spatial distribution in the outskirts of ω Cen, a region never explored before. Both these stellar sub-populations, according to spectroscopic measurements, are more metal-rich compared to the cluster main stellar population. These findings, once confirmed, make ω Cen the only stellar system currently known where metal-rich stars have a more extended spatial distribution compared to metal-poor stars. Kinematic and chemical abundance measurements are now needed for stars in the external regions of ω Cen to better characterize the properties of these sub-populations.

The Extended Northern ROSAT Galaxy Cluster Survey (NORAS II). I. Survey Construction and First Results

International Nuclear Information System (INIS)

Böhringer, Hans; Chon, Gayoung; Trümper, Joachim; Retzlaff, Jörg; Meisenheimer, Klaus; Schartel, Norbert

2017-01-01

As the largest, clearly defined building blocks of our universe, galaxy clusters are interesting astrophysical laboratories and important probes for cosmology. X-ray surveys for galaxy clusters provide one of the best ways to characterize the population of galaxy clusters. We provide a description of the construction of the NORAS II galaxy cluster survey based on X-ray data from the northern part of the ROSAT All-Sky Survey. NORAS II extends the NORAS survey down to a flux limit of 1.8 × 10 −12 erg s −1 cm −2 (0.1–2.4 keV), increasing the sample size by about a factor of two. The NORAS II cluster survey now reaches the same quality and depth as its counterpart, the southern REFLEX II survey, allowing us to combine the two complementary surveys. The paper provides information on the determination of the cluster X-ray parameters, the identification process of the X-ray sources, the statistics of the survey, and the construction of the survey selection function, which we provide in numerical format. Currently NORAS II contains 860 clusters with a median redshift of z  = 0.102. We provide a number of statistical functions, including the log N –log S and the X-ray luminosity function and compare these to the results from the complementary REFLEX II survey. Using the NORAS II sample to constrain the cosmological parameters, σ 8 and Ω m , yields results perfectly consistent with those of REFLEX II. Overall, the results show that the two hemisphere samples, NORAS II and REFLEX II, can be combined without problems into an all-sky sample, just excluding the zone of avoidance.

The Extended Northern ROSAT Galaxy Cluster Survey (NORAS II). I. Survey Construction and First Results

Energy Technology Data Exchange (ETDEWEB)

Böhringer, Hans; Chon, Gayoung; Trümper, Joachim [Max-Planck-Institut für Extraterrestrische Physik, D-85748 Garching (Germany); Retzlaff, Jörg [ESO, D-85748 Garching (Germany); Meisenheimer, Klaus [Max-Planck-Institut für Astronomy, Königstuhl 17, D-69117 Heidelberg (Germany); Schartel, Norbert [ESAC, Camino Bajo del Castillo, Villanueva de la Cañada, E-28692 Madrid (Spain)

2017-05-01

As the largest, clearly defined building blocks of our universe, galaxy clusters are interesting astrophysical laboratories and important probes for cosmology. X-ray surveys for galaxy clusters provide one of the best ways to characterize the population of galaxy clusters. We provide a description of the construction of the NORAS II galaxy cluster survey based on X-ray data from the northern part of the ROSAT All-Sky Survey. NORAS II extends the NORAS survey down to a flux limit of 1.8 × 10{sup −12} erg s{sup −1} cm{sup −2} (0.1–2.4 keV), increasing the sample size by about a factor of two. The NORAS II cluster survey now reaches the same quality and depth as its counterpart, the southern REFLEX II survey, allowing us to combine the two complementary surveys. The paper provides information on the determination of the cluster X-ray parameters, the identification process of the X-ray sources, the statistics of the survey, and the construction of the survey selection function, which we provide in numerical format. Currently NORAS II contains 860 clusters with a median redshift of z  = 0.102. We provide a number of statistical functions, including the log N –log S and the X-ray luminosity function and compare these to the results from the complementary REFLEX II survey. Using the NORAS II sample to constrain the cosmological parameters, σ {sub 8} and Ω{sub m}, yields results perfectly consistent with those of REFLEX II. Overall, the results show that the two hemisphere samples, NORAS II and REFLEX II, can be combined without problems into an all-sky sample, just excluding the zone of avoidance.

The CfA-Rosat Survey of Distant Clusters of Galaxies

Science.gov (United States)

McNamara, Brian

1998-01-01

We (Vikhlinin, McNamara, Forman, Jones, Hornstrup, Quintana) have completed a new survey of distant clusters of galaxies, which we use to to study cluster evolution over cosmological timescales. The clusters were identified as extended X-ray sources in 650 ROSAT PSPC images of high Galactic latitude fields. Our catalog of approximately 230 extended X-ray sources covers 160 square degrees on the sky. Ours is the largest of the several ROSAT serendipitous cluster surveys in progress (e.g. SHARC, Rosati, WARPS etc.). Using V,R,I imagery obtained at several observatories, we find that greater than 90% of the X-ray sources are associated with distant clusters of galaxies. We have obtained spectroscopic redshifts for nearly 80 clusters in our catalog, and we have measured photometric redshifts for the remaining clusters. Our sample contains more than 20 clusters at z > 0.5. I will discuss the logN-logS relationship for our clusters. Because our large survey area, we are able to confirm the evolution of the most luminous distant clusters first seen in the Einstein Extended Medium Sensitivity Survey. In addition, I will discuss the relationships between optical richness, core radius, and X-ray luminosity for distant, X-ray-selected clusters.

THE NEXT GENERATION VIRGO CLUSTER SURVEY (NGVS). I. INTRODUCTION TO THE SURVEY

International Nuclear Information System (INIS)

Ferrarese, Laura; Côté, Patrick; Gwyn, S. D. J.; MacArthur, Lauren A.; McConnachie, Alan W.; Blakeslee, John P.; Cuillandre, Jean-Charles; Peng, Eric W.; Duc, Pierre-Alain; Boselli, A.; Mei, Simona; Erben, Thomas; Durrell, Patrick R.; Christopher Mihos, J.; Jordán, Andrés; Puzia, Thomas H.; Lançon, Ariane; Emsellem, Eric; Balogh, Michael L.; Van Waerbeke, Ludovic

2012-01-01

The Next Generation Virgo Cluster Survey (NGVS) is a program that uses the 1 deg 2 MegaCam instrument on the Canada-France-Hawaii Telescope to carry out a comprehensive optical imaging survey of the Virgo cluster, from its core to its virial radius—covering a total area of 104 deg 2 —in the u*griz bandpasses. Thanks to a dedicated data acquisition strategy and processing pipeline, the NGVS reaches a point-source depth of g ≈ 25.9 mag (10σ) and a surface brightness limit of μ g ∼ 29 mag arcsec –2 (2σ above the mean sky level), thus superseding all previous optical studies of this benchmark galaxy cluster. In this paper, we give an overview of the technical aspects of the survey, such as areal coverage, field placement, choice of filters, limiting magnitudes, observing strategies, data processing and calibration pipelines, survey timeline, and data products. We also describe the primary scientific topics of the NGVS, which include: the galaxy luminosity and mass functions; the color-magnitude relation; galaxy scaling relations; compact stellar systems; galactic nuclei; the extragalactic distance scale; the large-scale environment of the cluster and its relationship to the Local Supercluster; diffuse light and the intracluster medium; galaxy interactions and evolutionary processes; and extragalactic star clusters. In addition, we describe a number of ancillary programs dealing with 'foreground' and 'background' science topics, including the study of high-inclination trans-Neptunian objects; the structure of the Galactic halo in the direction of the Virgo Overdensity and Sagittarius Stream; the measurement of cosmic shear, galaxy-galaxy, and cluster lensing; and the identification of distant galaxy clusters, and strong-lensing events.

Pre-main sequence masses and the age spread in the Orion cluster

International Nuclear Information System (INIS)

McNamara, B.J.

1975-01-01

The spread in formation times for stars earlier than GO in the Orion cluster is investigated. The range of stellar ages in this cluster is found to extend from at least 10 6 years to about 10 7 years. On the basis of this evidence and the similarity of the color--magnitude diagrams of other young clusters to the Orion cluster, it is suggested that the current method of dating these clusters (from the point at which the most massive stars just reach the zero-age main sequence) might not be valid. The masses of forty-one pre-main sequence stars within the ranges 4.05 less than or equal to log(Te) less than or equal to 3.77 and 0.6 less than or equal to log (L/L/sub sun/) less than or equal to 2.1 are determined from observed effective temperatures, luminosities, and gravities. These masses were then compared with those expected from Iben's (1965) pre-main sequence evolutionary calculations. In most cases, the agreement between these values was found to be within the observational errors. Finally, the pre-main sequence stars possessing infrared excesses are found to be apparently among the most massive and youngest stars still contracting toward the zero-age main sequence

Beryllium abundances along the evolutionary sequence of the open cluster IC 4651 - A new test for hydrodynamical stellar models

Science.gov (United States)

Smiljanic, R.; Pasquini, L.; Charbonnel, C.; Lagarde, N.

2010-02-01

Context. Previous analyses of lithium abundances in main sequence and red giant stars have revealed the action of mixing mechanisms other than convection in stellar interiors. Beryllium abundances in stars with Li abundance determinations can offer valuable complementary information on the nature of these mechanisms. Aims: Our aim is to derive Be abundances along the whole evolutionary sequence of an open cluster. We focus on the well-studied open cluster IC 4651. These Be abundances are used with previously determined Li abundances, in the same sample stars, to investigate the mixing mechanisms in a range of stellar masses and evolutionary stages. Methods: Atmospheric parameters were adopted from a previous abundance analysis by the same authors. New Be abundances have been determined from high-resolution, high signal-to-noise UVES spectra using spectrum synthesis and model atmospheres. The careful synthetic modeling of the Be lines region is used to calculate reliable abundances in rapidly rotating stars. The observed behavior of Be and Li is compared to theoretical predictions from stellar models including rotation-induced mixing, internal gravity waves, atomic diffusion, and thermohaline mixing. Results: Beryllium is detected in all the main sequence and turn-off sample stars, both slow- and fast-rotating stars, including the Li-dip stars, but is not detected in the red giants. Confirming previous results, we find that the Li dip is also a Be dip, although the depletion of Be is more modest than for Li in the corresponding effective temperature range. For post-main-sequence stars, the Be dilution starts earlier within the Hertzsprung gap than expected from classical predictions, as does the Li dilution. A clear dispersion in the Be abundances is also observed. Theoretical stellar models including the hydrodynamical transport processes mentioned above are able to reproduce all the observed features well. These results show a good theoretical understanding of the

Importance of Viral Sequence Length and Number of Variable and Informative Sites in Analysis of HIV Clustering.

Science.gov (United States)

Novitsky, Vlad; Moyo, Sikhulile; Lei, Quanhong; DeGruttola, Victor; Essex, M

2015-05-01

To improve the methodology of HIV cluster analysis, we addressed how analysis of HIV clustering is associated with parameters that can affect the outcome of viral clustering. The extent of HIV clustering and tree certainty was compared between 401 HIV-1C near full-length genome sequences and subgenomic regions retrieved from the LANL HIV Database. Sliding window analysis was based on 99 windows of 1,000 bp and 45 windows of 2,000 bp. Potential associations between the extent of HIV clustering and sequence length and the number of variable and informative sites were evaluated. The near full-length genome HIV sequences showed the highest extent of HIV clustering and the highest tree certainty. At the bootstrap threshold of 0.80 in maximum likelihood (ML) analysis, 58.9% of near full-length HIV-1C sequences but only 15.5% of partial pol sequences (ViroSeq) were found in clusters. Among HIV-1 structural genes, pol showed the highest extent of clustering (38.9% at a bootstrap threshold of 0.80), although it was significantly lower than in the near full-length genome sequences. The extent of HIV clustering was significantly higher for sliding windows of 2,000 bp than 1,000 bp. We found a strong association between the sequence length and proportion of HIV sequences in clusters, and a moderate association between the number of variable and informative sites and the proportion of HIV sequences in clusters. In HIV cluster analysis, the extent of detectable HIV clustering is directly associated with the length of viral sequences used, as well as the number of variable and informative sites. Near full-length genome sequences could provide the most informative HIV cluster analysis. Selected subgenomic regions with a high extent of HIV clustering and high tree certainty could also be considered as a second choice.

Survey sequencing and comparative analysis of the elephant shark (Callorhinchus milii genome.

Directory of Open Access Journals (Sweden)

Byrappa Venkatesh

2007-04-01

Full Text Available Owing to their phylogenetic position, cartilaginous fishes (sharks, rays, skates, and chimaeras provide a critical reference for our understanding of vertebrate genome evolution. The relatively small genome of the elephant shark, Callorhinchus milii, a chimaera, makes it an attractive model cartilaginous fish genome for whole-genome sequencing and comparative analysis. Here, the authors describe survey sequencing (1.4x coverage and comparative analysis of the elephant shark genome, one of the first cartilaginous fish genomes to be sequenced to this depth. Repetitive sequences, represented mainly by a novel family of short interspersed element-like and long interspersed element-like sequences, account for about 28% of the elephant shark genome. Fragments of approximately 15,000 elephant shark genes reveal specific examples of genes that have been lost differentially during the evolution of tetrapod and teleost fish lineages. Interestingly, the degree of conserved synteny and conserved sequences between the human and elephant shark genomes are higher than that between human and teleost fish genomes. Elephant shark contains putative four Hox clusters indicating that, unlike teleost fish genomes, the elephant shark genome has not experienced an additional whole-genome duplication. These findings underscore the importance of the elephant shark as a critical reference vertebrate genome for comparative analysis of the human and other vertebrate genomes. This study also demonstrates that a survey-sequencing approach can be applied productively for comparative analysis of distantly related vertebrate genomes.

PHAT STELLAR CLUSTER SURVEY. I. YEAR 1 CATALOG AND INTEGRATED PHOTOMETRY

International Nuclear Information System (INIS)

Johnson, L. Clifton; Dalcanton, Julianne J.; Fouesneau, Morgan; Hodge, Paul W.; Weisz, Daniel R.; Williams, Benjamin F.; Beerman, Lori C.; Seth, Anil C.; Caldwell, Nelson; Gouliermis, Dimitrios A.; Larsen, Søren S.; Olsen, Knut A. G.; San Roman, Izaskun; Sarajedini, Ata; Bianchi, Luciana; Dolphin, Andrew E.; Girardi, Léo; Guhathakurta, Puragra; Kalirai, Jason; Lang, Dustin

2012-01-01

The Panchromatic Hubble Andromeda Treasury (PHAT) survey is an ongoing Hubble Space Telescope (HST) multi-cycle program to obtain high spatial resolution imaging of one-third of the M31 disk at ultraviolet through near-infrared wavelengths. In this paper, we present the first installment of the PHAT stellar cluster catalog. When completed, the PHAT cluster catalog will be among the largest and most comprehensive surveys of resolved star clusters in any galaxy. The exquisite spatial resolution achieved with HST has allowed us to identify hundreds of new clusters that were previously inaccessible with existing ground-based surveys. We identify 601 clusters in the Year 1 sample, representing more than a factor of four increase over previous catalogs within the current survey area (390 arcmin 2 ). This work presents results derived from the first ∼25% of the survey data; we estimate that the final sample will include ∼2500 clusters. For the Year 1 objects, we present a catalog with positions, radii, and six-band integrated photometry. Along with a general characterization of the cluster luminosities and colors, we discuss the cluster luminosity function, the cluster size distributions, and highlight a number of individually interesting clusters found in the Year 1 search.

PHAT STELLAR CLUSTER SURVEY. I. YEAR 1 CATALOG AND INTEGRATED PHOTOMETRY

Energy Technology Data Exchange (ETDEWEB)

Johnson, L. Clifton; Dalcanton, Julianne J.; Fouesneau, Morgan; Hodge, Paul W.; Weisz, Daniel R.; Williams, Benjamin F.; Beerman, Lori C. [Department of Astronomy, University of Washington, Box 351580, Seattle, WA 98195 (United States); Seth, Anil C. [Department of Physics and Astronomy, University of Utah, Salt Lake City, UT 84112 (United States); Caldwell, Nelson [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Gouliermis, Dimitrios A. [Institut fuer Theoretische Astrophysik, Zentrum fuer Astronomie der Universitaet Heidelberg, Albert-Ueberle-Strasse 2, D-69120 Heidelberg (Germany); Larsen, Soren S. [Department of Astrophysics, IMAPP, Radboud University Nijmegen, P.O. Box 9010, 6500 GL Nijmegen (Netherlands); Olsen, Knut A. G. [National Optical Astronomy Observatory, 950 North Cherry Avenue, Tucson, AZ 85719 (United States); San Roman, Izaskun; Sarajedini, Ata [Department of Astronomy, University of Florida, 211 Bryant Space Science Center, Gainesville, FL 32611-2055 (United States); Bianchi, Luciana [Department of Physics and Astronomy, Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218 (United States); Dolphin, Andrew E. [Raytheon Company, 1151 East Hermans Road, Tucson, AZ 85756 (United States); Girardi, Leo [Osservatorio Astronomico di Padova-INAF, Vicolo dell' Osservatorio 5, I-35122 Padova (Italy); Guhathakurta, Puragra [Department of Astronomy and Astrophysics, University of California Observatories/Lick Observatory, University of California, 1156 High Street, Santa Cruz, CA 95064 (United States); Kalirai, Jason [Space Telescope Science Institute, 3700 San Martin Drive, Baltimore, MD 21218 (United States); Lang, Dustin, E-mail: lcjohnso@astro.washington.edu [Department of Astrophysical Sciences, Princeton University, Princeton, NJ 08544 (United States); and others

2012-06-20

The Panchromatic Hubble Andromeda Treasury (PHAT) survey is an ongoing Hubble Space Telescope (HST) multi-cycle program to obtain high spatial resolution imaging of one-third of the M31 disk at ultraviolet through near-infrared wavelengths. In this paper, we present the first installment of the PHAT stellar cluster catalog. When completed, the PHAT cluster catalog will be among the largest and most comprehensive surveys of resolved star clusters in any galaxy. The exquisite spatial resolution achieved with HST has allowed us to identify hundreds of new clusters that were previously inaccessible with existing ground-based surveys. We identify 601 clusters in the Year 1 sample, representing more than a factor of four increase over previous catalogs within the current survey area (390 arcmin{sup 2}). This work presents results derived from the first {approx}25% of the survey data; we estimate that the final sample will include {approx}2500 clusters. For the Year 1 objects, we present a catalog with positions, radii, and six-band integrated photometry. Along with a general characterization of the cluster luminosities and colors, we discuss the cluster luminosity function, the cluster size distributions, and highlight a number of individually interesting clusters found in the Year 1 search.

Sejong Open Cluster Survey (SOS). 0. Target Selection and Data Analysis

Science.gov (United States)

Sung, Hwankyung; Lim, Beomdu; Bessell, Michael S.; Kim, Jinyoung S.; Hur, Hyeonoh; Chun, Moo-Young; Park, Byeong-Gon

2013-06-01

Star clusters are superb astrophysical laboratories containing cospatial and coeval samples of stars with similar chemical composition. We initiate the Sejong Open cluster Survey (SOS) - a project dedicated to providing homogeneous photometry of a large number of open clusters in the SAAO Johnson-Cousins' UBVI system. To achieve our main goal, we pay much attention to the observation of standard stars in order to reproduce the SAAO standard system. Many of our targets are relatively small sparse clusters that escaped previous observations. As clusters are considered building blocks of the Galactic disk, their physical properties such as the initial mass function, the pattern of mass segregation, etc. give valuable information on the formation and evolution of the Galactic disk. The spatial distribution of young open clusters will be used to revise the local spiral arm structure of the Galaxy. In addition, the homogeneous data can also be used to test stellar evolutionary theory, especially concerning rare massive stars. In this paper we present the target selection criteria, the observational strategy for accurate photometry, and the adopted calibrations for data analysis such as color-color relations, zero-age main sequence relations, Sp - M_V relations, Sp - T_{eff} relations, Sp - color relations, and T_{eff} - BC relations. Finally we provide some data analysis such as the determination of the reddening law, the membership selection criteria, and distance determination.

Hierarchical modeling of cluster size in wildlife surveys

Science.gov (United States)

Royle, J. Andrew

2008-01-01

Clusters or groups of individuals are the fundamental unit of observation in many wildlife sampling problems, including aerial surveys of waterfowl, marine mammals, and ungulates. Explicit accounting of cluster size in models for estimating abundance is necessary because detection of individuals within clusters is not independent and detectability of clusters is likely to increase with cluster size. This induces a cluster size bias in which the average cluster size in the sample is larger than in the population at large. Thus, failure to account for the relationship between delectability and cluster size will tend to yield a positive bias in estimates of abundance or density. I describe a hierarchical modeling framework for accounting for cluster-size bias in animal sampling. The hierarchical model consists of models for the observation process conditional on the cluster size distribution and the cluster size distribution conditional on the total number of clusters. Optionally, a spatial model can be specified that describes variation in the total number of clusters per sample unit. Parameter estimation, model selection, and criticism may be carried out using conventional likelihood-based methods. An extension of the model is described for the situation where measurable covariates at the level of the sample unit are available. Several candidate models within the proposed class are evaluated for aerial survey data on mallard ducks (Anas platyrhynchos).

THE XMM CLUSTER SURVEY: GALAXY MORPHOLOGIES AND THE COLOR-MAGNITUDE RELATION IN XMMXCS J2215.9 - 1738 AT z = 1.46

International Nuclear Information System (INIS)

Hilton, Matt; Stanford, S. Adam; Stott, John P.; Collins, Chris A.; Hoyle, Ben; Nichol, Robert C.; Davidson, Michael; Mann, Robert G.; Hosmer, Mark; Liddle, Andrew R.; Lloyd-Davies, Ed; Mehrtens, Nicola; Romer, A. Kathy; Sabirli, Kivanc; Sahlen, Martin; Kay, Scott T.; Miller, Christopher J.; Viana, Pedro T. P.; West, Michael J.; Barbary, Kyle

2009-01-01

We present a study of the morphological fractions and color-magnitude relation (CMR) in the most distant X-ray selected galaxy cluster currently known, XMMXCS J2215.9 - 1738 at z = 1.46, using a combination of optical imaging data obtained with the Hubble Space Telescope Advanced Camera for Surveys, and infrared data from the Multi-Object Infrared Camera and Spectrograph, mounted on the 8.2 m Subaru telescope. We find that the morphological mix of the cluster galaxy population is similar to clusters at z ∼ 1. Within the central 0.5 Mpc, approximately ∼62% of the galaxies identified as likely cluster members are ellipticals or S0s; and ∼38% are spirals or irregulars. Therefore, early-type galaxies were already entrenched as the dominant galaxy population in at least some clusters approximately ∼4.5 Gyr after the big bang. We measure the CMRs for the early-type galaxies, finding that the slope in the z 850 -J relation is consistent with that measured in the Coma cluster, some ∼9 Gyr earlier, although the uncertainty is large. In contrast, the measured intrinsic scatter about the CMR is more than three times the value measured in Coma, after conversion to rest-frame U - V. From comparison with stellar population synthesis models, the intrinsic scatter measurements imply mean luminosity-weighted ages for the early-type galaxies in J2215.9 - 1738 of ∼3 Gyr, corresponding to the major epoch of star formation coming to an end at z f ∼ 3-5. We find that the cluster exhibits evidence of the 'downsizing' phenomenon: the fraction of faint cluster members on the red sequence expressed using the Dwarf-to-Giant Ratio (DGR) is 0.32 ± 0.18 within a radius of 0.5R 200 . This is consistent with extrapolation of the redshift evolution of the DGR seen in cluster samples at z 1 clusters, we find a lack of very bright galaxies within the cluster.

Confronting the sound speed of dark energy with future cluster surveys

DEFF Research Database (Denmark)

Basse, Tobias; Eggers Bjaelde, Ole; Hannestad, Steen

2012-01-01

Future cluster surveys will observe galaxy clusters numbering in the hundred thousands. We consider this work how these surveys can be used to constrain dark energy parameters: in particular, the equation of state parameter w and the non-adiabatic sound speed c_s^2. We demonstrate that, in combin......Future cluster surveys will observe galaxy clusters numbering in the hundred thousands. We consider this work how these surveys can be used to constrain dark energy parameters: in particular, the equation of state parameter w and the non-adiabatic sound speed c_s^2. We demonstrate that......, in combination with Cosmic Microwave Background (CMB) observations from Planck, cluster surveys such as that in the ESA Euclid project will be able to determine a time-independent w with subpercent precision. Likewise, if the dark energy sound horizon falls within the length scales probed by the cluster survey......, then c_s^2 can be pinned down to within an order of magnitude. In the course of this work, we also investigate the process of dark energy virialisation in the presence of an arbitrary sound speed. We find that dark energy clustering and virialisation can lead to dark energy contributing to the total...

A CCD photometric analysis of the old open cluster NGC 2420

International Nuclear Information System (INIS)

Anthony-Twarog, B.J.; Twarog, B.A.; Kaluzny, J.; Shara, M.M.

1990-01-01

Precision CCD photometry on the BV system of the core of the old open cluster NGC 2420 is analyzed to explore the value of such an approach for open clusters, particularly in the areas of Galactic and stellar evolution. The unevolved main sequence is shown to be narrow and well defined to the completeness limit of V = 18.5, and the distribution of stars away from the main sequence is shown to be bimodal, with a secondary peak located approximately 0.7 mag above the fiducial main sequence. It is estimated that 50 percent of the cluster systems are binary. Near the turnoff the cluster exhibits some detailed structure. Fiducial relations are given for the cluster extending from the lower main sequence to the red giant branch 1.5 mag above the clump. Comparisons are made between the NGC 2420 cluster and NGC 2506, the isochrones of VandenBerg (1985), and 47 Tuc, in order to estimate cluster parameters, including reddening and metallicity. 68 refs

FUNDAMENTAL PARAMETERS, INTEGRATED RED GIANT BRANCH MASS LOSS, AND DUST PRODUCTION IN THE GALACTIC GLOBULAR CLUSTER 47 TUCANAE

International Nuclear Information System (INIS)

McDonald, I.; Zijlstra, A. A.; Boyer, M. L.; Gordon, K.; Meixner, M.; Sewilo, M.; Shiao, B.; Whitney, B.; Van Loon, J. Th.; Hora, J. L.; Robitaille, T.; Babler, B.; Meade, M.; Block, M.; Misselt, K.

2011-01-01

Fundamental parameters and time evolution of mass loss are investigated for post-main-sequence stars in the Galactic globular cluster 47 Tucanae (NGC 104). This is accomplished by fitting spectral energy distributions (SEDs) to existing optical and infrared photometry and spectroscopy, to produce a true Hertzsprung-Russell diagram. We confirm the cluster's distance as d = 4611 +213 -200 pc and age as 12 ± 1 Gyr. Horizontal branch models appear to confirm that no more red giant branch mass loss occurs in 47 Tuc than in the more metal-poor ω Centauri, though difficulties arise due to inconsistencies between the models. Using our SEDs, we identify those stars that exhibit infrared excess, finding excess only among the brightest giants: dusty mass loss begins at a luminosity of ∼1000 L sun , becoming ubiquitous above L = 2000 L sun . Recent claims of dust production around lower-luminosity giants cannot be reproduced, despite using the same archival Spitzer imagery.

Clustering of galaxies around AGNs in the HSC Wide survey

Science.gov (United States)

Shirasaki, Yuji; Akiyama, Masayuki; Nagao, Tohru; Toba, Yoshiki; He, Wanqiu; Ohishi, Masatoshi; Mizumoto, Yoshihiko; Miyazaki, Satoshi; Nishizawa, Atsushi J.; Usuda, Tomonori

2018-01-01

We have measured the clustering of galaxies around active galactic nuclei (AGNs) for which single-epoch virial masses of the super-massive black hole (SMBH) are available to investigate the relation between the large-scale environment of AGNs and the evolution of SMBHs. The AGN samples used in this work were derived from the Sloan Digital Sky Survey (SDSS) observations and the galaxy samples were from the 240 deg2 S15b data of the Hyper Suprime-Cam Subaru Strategic Program (HSC-SSP). The investigated redshift range is 0.6-3.0, and the masses of the SMBHs lie in the range 107.5-1010 M⊙. The absolute magnitude of the galaxy samples reaches to Mλ310 ˜ -18 at rest-frame wavelength 310 nm for the low-redshift end of the samples. More than 70% of the galaxies in the analysis are blue. We found a significant dependence of the cross-correlation length on redshift, which primarily reflects the brightness-dependence of the galaxy clustering. At the lowest redshifts the cross-correlation length increases from 7 h-1 Mpc around Mλ310 = -19 mag to >10 h-1 Mpc beyond Mλ310 = -20 mag. No significant dependence of the cross-correlation length on BH mass was found for whole galaxy samples dominated by blue galaxies, while there was an indication of BH mass dependence in the cross-correlation with red galaxies. These results provides a picture of the environment of AGNs studied in this paper being enriched with blue star-forming galaxies, and a fraction of the galaxies are evolving into red galaxies along with the evolution of SMBHs in that system.

CONSTRAINING THE SCATTER IN THE MASS-RICHNESS RELATION OF maxBCG CLUSTERS WITH WEAK LENSING AND X-RAY DATA

International Nuclear Information System (INIS)

Rozo, Eduardo; Rykoff, Eli S.; Evrard, August; McKay, Timothy; Hao Jiangang; Becker, Matthew; Wechsler, Risa H.; Koester, Benjamin P.; Hansen, Sarah; Frieman, Joshua; Sheldon, Erin; Johnston, David; Annis, James

2009-01-01

We measure the logarithmic scatter in mass at fixed richness for clusters in the maxBCG cluster catalog, an optically selected cluster sample drawn from Sloan Digital Sky Survey imaging data. Our measurement is achieved by demanding consistency between available weak-lensing and X-ray measurements of the maxBCG clusters, and the X-ray luminosity-mass relation inferred from the 400 days X-ray cluster survey, a flux-limited X-ray cluster survey. We find σ lnM|N 200 =0.45 -0.18 +0.20 (95% CL) at N 200 ∼ 40, where N 200 is the number of red sequence galaxies in a cluster. As a byproduct of our analysis, we also obtain a constraint on the correlation coefficient between ln L X and ln M at fixed richness, which is best expressed as a lower limit, r L,M|N ≥ 0.85(95% CL). This is the first observational constraint placed on a correlation coefficient involving two different cluster mass tracers. We use our results to produce a state-of-the-art estimate of the halo mass function at z = 0.23-the median redshift of the maxBCG cluster sample-and find that it is consistent with the WMAP5 cosmology. Both the mass function data and its covariance matrix are presented.

The IMACS Cluster Building Survey. I. Description of the Survey and Analysis Methods

Science.gov (United States)

Oemler Jr., Augustus; Dressler, Alan; Gladders, Michael G.; Rigby, Jane R.; Bai, Lei; Kelson, Daniel; Villanueva, Edward; Fritz, Jacopo; Rieke, George; Poggianti, Bianca M.;

THE IMACS CLUSTER BUILDING SURVEY. I. DESCRIPTION OF THE SURVEY AND ANALYSIS METHODS

Energy Technology Data Exchange (ETDEWEB)

Oemler, Augustus Jr.; Dressler, Alan; Kelson, Daniel; Villanueva, Edward [Observatories of the Carnegie Institution for Science, 813 Santa Barbara St., Pasadena, CA 91101-1292 (United States); Gladders, Michael G. [Department of Astronomy and Astrophysics, University of Chicago, Chicago, IL 60637 (United States); Rigby, Jane R. [Observational Cosmology Lab, NASA Goddard Space Flight Center, Greenbelt, MD 20771 (United States); Bai Lei [Department of Astronomy and Astrophysics, University of Toronto, 50 St. George Street, Toronto, ON M5S 3H4 (Canada); Fritz, Jacopo [Sterrenkundig Observatorium, Universiteit Gent, Krijgslaan 281 S9, B-9000 Gent (Belgium); Rieke, George [Steward Observatory, University of Arizona, Tucson, AZ 8572 (United States); Poggianti, Bianca M.; Vulcani, Benedetta, E-mail: oemler@obs.carnegiescience.edu [INAF-Osservatorio Astronomico di Padova, Vicolo dell' Osservatorio 5, I-35122 Padova (Italy)

2013-06-10

The IMACS Cluster Building Survey uses the wide field spectroscopic capabilities of the IMACS spectrograph on the 6.5 m Baade Telescope to survey the large-scale environment surrounding rich intermediate-redshift clusters of galaxies. The goal is to understand the processes which may be transforming star-forming field galaxies into quiescent cluster members as groups and individual galaxies fall into the cluster from the surrounding supercluster. This first paper describes the survey: the data taking and reduction methods. We provide new calibrations of star formation rates (SFRs) derived from optical and infrared spectroscopy and photometry. We demonstrate that there is a tight relation between the observed SFR per unit B luminosity, and the ratio of the extinctions of the stellar continuum and the optical emission lines. With this, we can obtain accurate extinction-corrected colors of galaxies. Using these colors as well as other spectral measures, we determine new criteria for the existence of ongoing and recent starbursts in galaxies.

Identification of an extensive gene cluster among a family of PPOs in Trifolium pratense L. (red clover using a large insert BAC library

Directory of Open Access Journals (Sweden)

Thomas Ann

2009-07-01

Full Text Available Abstract Background Polyphenol oxidase (PPO activity in plants is a trait with potential economic, agricultural and environmental impact. In relation to the food industry, PPO-induced browning causes unacceptable discolouration in fruit and vegetables: from an agriculture perspective, PPO can protect plants against pathogens and environmental stress, improve ruminant growth by increasing nitrogen absorption and decreasing nitrogen loss to the environment through the animal's urine. The high PPO legume, red clover, has a significant economic and environmental role in sustaining low-input organic and conventional farms. Molecular markers for a range of important agricultural traits are being developed for red clover and improved knowledge of PPO genes and their structure will facilitate molecular breeding. Results A bacterial artificial chromosome (BAC library comprising 26,016 BAC clones with an average 135 Kb insert size, was constructed from Trifolium pratense L. (red clover, a diploid legume with a haploid genome size of 440–637 Mb. Library coverage of 6–8 genome equivalents ensured good representation of genes: the library was screened for polyphenol oxidase (PPO genes. Two single copy PPO genes, PPO4 and PPO5, were identified to add to a family of three, previously reported, paralogous genes (PPO1–PPO3. Multiple PPO1 copies were identified and characterised revealing a subfamily comprising three variants PPO1/2, PPO1/4 and PPO1/5. Six PPO genes clustered within the genome: four separate BAC clones could be assembled onto a predicted 190–510 Kb single BAC contig. Conclusion A PPO gene family in red clover resides as a cluster of at least 6 genes. Three of these genes have high homology, suggesting a more recent evolutionary event. This PPO cluster covers a longer region of the genome than clusters detected in rice or previously reported in tomato. Full-length coding sequences from PPO4, PPO5, PPO1/5 and PPO1/4 will facilitate

On the determination of the He abundance distribution in globular clusters from the width of the main sequence

Science.gov (United States)

Cassisi, Santi; Salaris, Maurizio; Pietrinferni, Adriano; Hyder, David

2017-01-01

One crucial piece of information to study the origin of multiple stellar populations in globular clusters is the range of initial helium abundances ΔY amongst the sub-populations hosted by each cluster. These estimates are commonly obtained by measuring the width in colour of the unevolved main sequence in an optical colour-magnitude diagram (CMD). The measured colour spread is then compared with predictions from theoretical stellar isochrones with varying initial He abundances to determine ΔY. The availability of UV/optical magnitudes, thanks to the Hubble Space Telescope UV Legacy Survey of Galactic GCs project, will allow the homogeneous determination of ΔY for a large Galactic globular cluster sample. From a theoretical point of view, accurate UV CMDs can efficiently disentangle the various sub-populations, and main sequence colour differences in the ACS F606W - (F606W - F814W) diagram allow an estimate of ΔY. We demonstrate that from a theoretical perspective, the (F606W - F814W) colour is an extremely reliable He-abundance indicator. The derivative dY/d(F606W - F814W), computed at a fixed luminosity along the unevolved main sequence, is largely insensitive to the physical assumptions made in stellar model computations, being more sensitive to the choice of the bolometric correction scale, and is only slightly dependent on the adopted set of stellar models. From a theoretical point of view, the (F606W - F814W) colour width of the cluster main sequence is therefore a robust diagnostic of the ΔY range.

Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering

Directory of Open Access Journals (Sweden)

Li Weizhong

2008-04-01

Full Text Available Abstract Background The identification and study of proteins from metagenomic datasets can shed light on the roles and interactions of the source organisms in their communities. However, metagenomic datasets are characterized by the presence of organisms with varying GC composition, codon usage biases etc., and consequently gene identification is challenging. The vast amount of sequence data also requires faster protein family classification tools. Results We present a computational improvement to a sequence clustering approach that we developed previously to identify and classify protein coding genes in large microbial metagenomic datasets. The clustering approach can be used to identify protein coding genes in prokaryotes, viruses, and intron-less eukaryotes. The computational improvement is based on an incremental clustering method that does not require the expensive all-against-all compute that was required by the original approach, while still preserving the remote homology detection capabilities. We present evaluations of the clustering approach in protein-coding gene identification and classification, and also present the results of updating the protein clusters from our previous work with recent genomic and metagenomic sequences. The clustering results are available via CAMERA, (http://camera.calit2.net. Conclusion The clustering paradigm is shown to be a very useful tool in the analysis of microbial metagenomic data. The incremental clustering method is shown to be much faster than the original approach in identifying genes, grouping sequences into existing protein families, and also identifying novel families that have multiple members in a metagenomic dataset. These clusters provide a basis for further studies of protein families.

Sequence spaces [Formula: see text] and [Formula: see text] with application in clustering.

Science.gov (United States)

Khan, Mohd Shoaib; Alamri, Badriah As; Mursaleen, M; Lohani, Qm Danish

2017-01-01

Distance measures play a central role in evolving the clustering technique. Due to the rich mathematical background and natural implementation of [Formula: see text] distance measures, researchers were motivated to use them in almost every clustering process. Beside [Formula: see text] distance measures, there exist several distance measures. Sargent introduced a special type of distance measures [Formula: see text] and [Formula: see text] which is closely related to [Formula: see text]. In this paper, we generalized the Sargent sequence spaces through introduction of [Formula: see text] and [Formula: see text] sequence spaces. Moreover, it is shown that both spaces are BK -spaces, and one is a dual of another. Further, we have clustered the two-moon dataset by using an induced [Formula: see text]-distance measure (induced by the Sargent sequence space [Formula: see text]) in the k-means clustering algorithm. The clustering result established the efficacy of replacing the Euclidean distance measure by the [Formula: see text]-distance measure in the k-means algorithm.

Near-infrared imaging survey of faint companions around young dwarfs in the Pleiades cluster

International Nuclear Information System (INIS)

Itoh, Yoichi; Funayama, Hitoshi; Hashiguchi, Toshio; Oasa, Yumiko; Hayashi, Masahiko; Fukagawa, Misato; Currie, Thayne

2011-01-01

We conducted a near-infrared imaging survey of 11 young dwarfs in the Pleiades cluster using the Subaru Telescope and the near-infrared coronagraph imager. We found ten faint point sources, with magnitudes as faint as 20 mag in the K-band, with around seven dwarfs. Comparison with the Spitzer archive images revealed that a pair of the faint sources around V 1171 Tau is very red in infrared wavelengths, which indicates very low-mass young stellar objects. However, the results of our follow-up proper motion measurements implied that the central star and the faint sources do not share common proper motions, suggesting that they are not physically associated.

The MAVERIC Survey: A Red Straggler Binary with an Invisible Companion in the Galactic Globular Cluster M10

Science.gov (United States)

Shishkovsky, Laura; Strader, Jay; Chomiuk, Laura; Bahramian, Arash; Tremou, Evangelia; Li, Kwan-Lok; Salinas, Ricardo; Tudor, Vlad; Miller-Jones, James C. A.; Maccarone, Thomas J.; Heinke, Craig O.; Sivakoff, Gregory R.

2018-03-01

We present the discovery and characterization of a radio-bright binary in the Galactic globular cluster M10. First identified in deep radio continuum data from the Karl G. Jansky Very Large Array, M10-VLA1 has a flux density of 27 ± 4 μJy at 7.4 GHz and a flat-to-inverted radio spectrum. Chandra imaging shows an X-ray source with L X ≈ 1031 erg s‑1 matching the location of the radio source. This places M10-VLA1 within the scatter of the radio-X-ray luminosity correlation for quiescent stellar-mass black holes, and a black hole X-ray binary is a viable explanation for this system. The radio and X-ray properties of the source disfavor, but do not rule out, identification as an accreting neutron star or white dwarf system. Optical imaging from the Hubble Space Telescope and spectroscopy from the SOAR telescope show that the system has an orbital period of 3.339 days and an unusual “red straggler” component: an evolved star found redward of the M10 red giant branch. These data also show UV/optical variability and double-peaked Hα emission characteristic of an accretion disk. However, SOAR spectroscopic monitoring reveals that the velocity semi-amplitude of the red straggler is low. We conclude that M10-VLA1 is most likely either a quiescent black hole X-ray binary with a rather face-on (i orientation or an unusual flaring RS Canum Venaticorum variable-type active binary, and discuss future observations that could distinguish between these possibilities.

ULTRA-COMPACT DWARFS IN THE CORE OF THE COMA CLUSTER

International Nuclear Information System (INIS)

Madrid, Juan P.; Graham, Alister W.; Forbes, Duncan A.; Spitler, Lee R.; Harris, William E.; Goudfrooij, Paul; Ferguson, Henry C.; Carter, David; Blakeslee, John P.

2010-01-01

We have discovered both a red and a blue subpopulation of ultra-compact dwarf (UCD) galaxy candidates in the Coma galaxy cluster. We analyzed deep F475W (Sloan g) and F814W (I) Hubble Space Telescope images obtained with the Advanced Camera for Surveys Wide Field Channel as part of the Coma Cluster Treasury Survey and have fitted the light profiles of ∼5000 point-like sources in the vicinity of NGC 4874, one of the two central dominant galaxies of the Coma Cluster. Although almost all of these sources are globular clusters that remain unresolved, we found that 52 objects have effective radii between ∼10 and 66 pc, in the range spanned by dwarf globular transition objects (DGTOs) and UCDs. Of these 52 compact objects, 25 are brighter than M V ∼ -11 mag, a magnitude conventionally thought to separate UCDs and globular clusters. The UCD/DGTO candidates have the same color and luminosity distribution as the most luminous globular clusters within the red and blue subpopulations of the immensely rich NGC 4874 globular cluster system. Unlike standard globular clusters, blue and red UCD/DGTO subpopulations have the same median effective radius. The spatial distribution of UCD/DGTO candidates reveals that they congregate toward NGC 4874 and are not uniformly distributed. We find a relative deficit of UCD/DGTOs compared with globular clusters in the inner 15 kpc around NGC 4874; however, at larger radii UCD/DGTO and globular clusters follow the same spatial distribution.

Stellar Variability at the Main-sequence Turnoff of the Intermediate-age LMC Cluster NGC 1846

Science.gov (United States)

Salinas, R.; Pajkos, M. A.; Vivas, A. K.; Strader, J.; Contreras Ramos, R.

2018-04-01

Intermediate-age (IA) star clusters in the Large Magellanic Cloud (LMC) present extended main-sequence turn-offs (MSTO) that have been attributed to either multiple stellar populations or an effect of stellar rotation. Recently it has been proposed that these extended main sequences can also be produced by ill-characterized stellar variability. Here we present Gemini-S/Gemini Multi-Object Spectrometer (GMOS) time series observations of the IA cluster NGC 1846. Using differential image analysis, we identified 73 new variable stars, with 55 of those being of the Delta Scuti type, that is, pulsating variables close the MSTO for the cluster age. Considering completeness and background contamination effects, we estimate the number of δ Sct belonging to the cluster between 40 and 60 members, although this number is based on the detection of a single δ Sct within the cluster half-light radius. This amount of variable stars at the MSTO level will not produce significant broadening of the MSTO, albeit higher-resolution imaging will be needed to rule out variable stars as a major contributor to the extended MSTO phenomenon. Though modest, this amount of δ Sct makes NGC 1846 the star cluster with the highest number of these variables ever discovered. Lastly, our results present a cautionary tale about the adequacy of shallow variability surveys in the LMC (like OGLE) to derive properties of its δ Sct population. Based on observations obtained at the Gemini Observatory, which is operated by the Association of Universities for Research in Astronomy, Inc., under a cooperative agreement with the NSF on behalf of the Gemini partnership: the National Science Foundation (United States), the National Research Council (Canada), CONICYT (Chile), Ministerio de Ciencia, Tecnología e Innovación Productiva (Argentina), and Ministério da Ciência, Tecnologia e Inovação (Brazil).

The VIMOS Public Extragalactic Redshift Survey (VIPERS):. A quiescent formation of massive red-sequence galaxies over the past 9 Gyr

Science.gov (United States)

Fritz, A.; Scodeggio, M.; Ilbert, O.; Bolzonella, M.; Davidzon, I.; Coupon, J.; Garilli, B.; Guzzo, L.; Zamorani, G.; Abbas, U.; Adami, C.; Arnouts, S.; Bel, J.; Bottini, D.; Branchini, E.; Cappi, A.; Cucciati, O.; De Lucia, G.; de la Torre, S.; Franzetti, P.; Fumana, M.; Granett, B. R.; Iovino, A.; Krywult, J.; Le Brun, V.; Le Fèvre, O.; Maccagni, D.; Małek, K.; Marulli, F.; McCracken, H. J.; Paioro, L.; Polletta, M.; Pollo, A.; Schlagenhaufer, H.; Tasca, L. A. M.; Tojeiro, R.; Vergani, D.; Zanichelli, A.; Burden, A.; Di Porto, C.; Marchetti, A.; Marinoni, C.; Mellier, Y.; Moscardini, L.; Nichol, R. C.; Peacock, J. A.; Percival, W. J.; Phleps, S.; Wolk, M.

2014-03-01

We explore the evolution of the colour-magnitude relation (CMR) and luminosity function (LF) at 0.4 contamination varies for the different methods and with redshift, but regardless of the method we measure a consistent evolution of the red-sequence (RS). Between 0.4 1011 M⊙) and expeditious RS formation over a short period of ~1.5 Gyr starting before z = 1. This is supported by the detection of ongoing SF in early-type galaxies at 0.9 Chile, using the Very Large Telescope under programs 182.A-0886 and partly 070.A-9007. Also based on observations obtained with MegaPrime/MegaCam, a joint project of CFHT and CEA/DAPNIA, at the Canada-France-Hawaii Telescope (CFHT), which is operated by the National Research Council (NRC) of Canada, the Institut National des Sciences de l'Univers of the Centre National de la Recherche Scientifique (CNRS) of France, and the University of Hawaii. This work is based in part on data products produced at TERAPIX and the Canadian Astronomy Data Centre as part of the Canada-France-Hawaii Telescope Legacy Survey, a collaborative project of NRC and CNRS. The VIPERS website is http://www.vipers.inaf.it/.Appendices are available in electronic form at http://www.aanda.org

Cosmological analysis of galaxy clusters surveys in X-rays

International Nuclear Information System (INIS)

Clerc, N.

2012-01-01

Clusters of galaxies are the most massive objects in equilibrium in our Universe. Their study allows to test cosmological scenarios of structure formation with precision, bringing constraints complementary to those stemming from the cosmological background radiation, supernovae or galaxies. They are identified through the X-ray emission of their heated gas, thus facilitating their mapping at different epochs of the Universe. This report presents two surveys of galaxy clusters detected in X-rays and puts forward a method for their cosmological interpretation. Thanks to its multi-wavelength coverage extending over 10 sq. deg. and after one decade of expertise, the XMM-LSS allows a systematic census of clusters in a large volume of the Universe. In the framework of this survey, the first part of this report describes the techniques developed to the purpose of characterizing the detected objects. A particular emphasis is placed on the most distant ones (z ≥ 1) through the complementarity of observations in X-ray, optical and infrared bands. Then the X-CLASS survey is fully described. Based on XMM archival data, it provides a new catalogue of 800 clusters detected in X-rays. A cosmological analysis of this survey is performed thanks to 'CR-HR' diagrams. This new method self-consistently includes selection effects and scaling relations and provides a means to bypass the computation of individual cluster masses. Propositions are made for applying this method to future surveys as XMM-XXL and eRosita. (author) [fr

The complete mitochondrial genome sequence of the Tibetan red fox (Vulpes vulpes montana).

Science.gov (United States)

Zhang, Jin; Zhang, Honghai; Zhao, Chao; Chen, Lei; Sha, Weilai; Liu, Guangshuai

2015-01-01

In this study, the complete mitochondrial genome of the Tibetan red fox (Vulpes Vulpes montana) was sequenced for the first time using blood samples obtained from a wild female red fox captured from Lhasa in Tibet, China. Qinghai--Tibet Plateau is the highest plateau in the world with an average elevation above 3500 m. Sequence analysis showed it contains 12S rRNA gene, 16S rRNA gene, 22 tRNA genes, 13 protein-coding genes and 1 control region (CR). The variable tandem repeats in CR is the main reason of the length variability of mitochondrial genome among canide animals.

Tests of two convection theories for red giant and red supergiant envelopes

Science.gov (United States)

Stothers, Richard B.; Chin, Chao-Wen

1995-01-01

Two theories of stellar envelope convection are considered here in the context of red giants and red supergiants of intermediate to high mass: Boehm-Vitense's standard mixing-length theory (MLT) and Canuto & Mazzitelli's new theory incorporating the full spectrum of turbulence (FST). Both theories assume incompressible convection. Two formulations of the convective mixing length are also evaluated: l proportional to the local pressure scale height (H(sub P)) and l proportional to the distance from the upper boundary of the convection zone (z). Applications to test both theories are made by calculating stellar evolutionary sequences into the red zone (z). Applications to test both theories are made by calculating stellar evolutionary sequences into the red phase of core helium burning. Since the theoretically predicted effective temperatures for cool stars are known to be sensitive to the assigned value of the mixing length, this quantity has been individually calibrated for each evolutionary sequence. The calibration is done in a composite Hertzsprung-Russell diagram for the red giant and red supergiant members of well-observed Galactic open clusters. The MLT model requires the constant of proportionality for the convective mixing length to vary by a small but statistically significant amount with stellar mass, whereas the FST model succeeds in all cases with the mixing lenghth simply set equal to z. The structure of the deep stellar interior, however, remains very nearly unaffected by the choices of convection theory and mixing lenghth. Inside the convective envelope itself, a density inversion always occurs, but is somewhat smaller for the convectively more efficient MLT model. On physical grounds the FST model is preferable, and seems to alleviate the problem of finding the proper mixing length.

Maximum-likelihood model averaging to profile clustering of site types across discrete linear sequences.

Directory of Open Access Journals (Sweden)

Zhang Zhang

2009-06-01

Full Text Available A major analytical challenge in computational biology is the detection and description of clusters of specified site types, such as polymorphic or substituted sites within DNA or protein sequences. Progress has been stymied by a lack of suitable methods to detect clusters and to estimate the extent of clustering in discrete linear sequences, particularly when there is no a priori specification of cluster size or cluster count. Here we derive and demonstrate a maximum likelihood method of hierarchical clustering. Our method incorporates a tripartite divide-and-conquer strategy that models sequence heterogeneity, delineates clusters, and yields a profile of the level of clustering associated with each site. The clustering model may be evaluated via model selection using the Akaike Information Criterion, the corrected Akaike Information Criterion, and the Bayesian Information Criterion. Furthermore, model averaging using weighted model likelihoods may be applied to incorporate model uncertainty into the profile of heterogeneity across sites. We evaluated our method by examining its performance on a number of simulated datasets as well as on empirical polymorphism data from diverse natural alleles of the Drosophila alcohol dehydrogenase gene. Our method yielded greater power for the detection of clustered sites across a breadth of parameter ranges, and achieved better accuracy and precision of estimation of clusters, than did the existing empirical cumulative distribution function statistics.

A model-based clustering method to detect infectious disease transmission outbreaks from sequence variation.

Directory of Open Access Journals (Sweden)

Rosemary M McCloskey

2017-11-01

Full Text Available Clustering infections by genetic similarity is a popular technique for identifying potential outbreaks of infectious disease, in part because sequences are now routinely collected for clinical management of many infections. A diverse number of nonparametric clustering methods have been developed for this purpose. These methods are generally intuitive, rapid to compute, and readily scale with large data sets. However, we have found that nonparametric clustering methods can be biased towards identifying clusters of diagnosis-where individuals are sampled sooner post-infection-rather than the clusters of rapid transmission that are meant to be potential foci for public health efforts. We develop a fundamentally new approach to genetic clustering based on fitting a Markov-modulated Poisson process (MMPP, which represents the evolution of transmission rates along the tree relating different infections. We evaluated this model-based method alongside five nonparametric clustering methods using both simulated and actual HIV sequence data sets. For simulated clusters of rapid transmission, the MMPP clustering method obtained higher mean sensitivity (85% and specificity (91% than the nonparametric methods. When we applied these clustering methods to published sequences from a study of HIV-1 genetic clusters in Seattle, USA, we found that the MMPP method categorized about half (46% as many individuals to clusters compared to the other methods. Furthermore, the mean internal branch lengths that approximate transmission rates were significantly shorter in clusters extracted using MMPP, but not by other methods. We determined that the computing time for the MMPP method scaled linearly with the size of trees, requiring about 30 seconds for a tree of 1,000 tips and about 20 minutes for 50,000 tips on a single computer. This new approach to genetic clustering has significant implications for the application of pathogen sequence analysis to public health, where

THREE DISCRETE GROUPS WITH HOMOGENEOUS CHEMISTRY ALONG THE RED GIANT BRANCH IN THE GLOBULAR CLUSTER NGC 2808

International Nuclear Information System (INIS)

Carretta, E.

2014-01-01

We present the homogeneous reanalysis of Mg and Al abundances from high resolution UVES/FLAMES spectra for 31 red giants in the globular cluster NGC 2808. We found a well defined Mg-Al anticorrelation reaching a regime of subsolar Mg abundance ratios, with a spread of about 1.4 dex in [Al/Fe]. The main result from the improved statistics of our sample is that the distribution of stars is not continuous along the anticorrelation because they are neatly clustered into three distinct clumps, each with different chemical compositions. One group (P) shows a primordial composition of field stars of similar metallicity, and the other two (I and E) have increasing abundances of Al and decreasing abundances of Mg. The fraction of stars we found in the three components (P: 68%, I: 19%, E: 13%) is in excellent agreement with the ratios computed for the three distinct main sequences in NGC 2808: for the first time there is a clear correspondence between discrete photometric sequences of dwarfs and distinct groups of giants with homogeneous chemistry. The composition of the I group cannot be reproduced by mixing of matter with extreme processing in hot H-burning and gas with pristine, unprocessed composition, as also found in the recent analysis of three discrete groups in NGC 6752. This finding suggests that different classes of polluters were probably at work in NGC 2808 as well

Y-Chromosome Markers for the Red Fox.

Science.gov (United States)

Rando, Halie M; Stutchman, Jeremy T; Bastounes, Estelle R; Johnson, Jennifer L; Driscoll, Carlos A; Barr, Christina S; Trut, Lyudmila N; Sacks, Benjamin N; Kukekova, Anna V

2017-09-01

The de novo assembly of the red fox (Vulpes vulpes) genome has facilitated the development of genomic tools for the species. Efforts to identify the population history of red foxes in North America have previously been limited by a lack of information about the red fox Y-chromosome sequence. However, a megabase of red fox Y-chromosome sequence was recently identified over 2 scaffolds in the reference genome. Here, these scaffolds were scanned for repeated motifs, revealing 194 likely microsatellites. Twenty-three of these loci were selected for primer development and, after testing, produced a panel of 11 novel markers that were analyzed alongside 2 markers previously developed for the red fox from dog Y-chromosome sequence. The markers were genotyped in 76 male red foxes from 4 populations: 7 foxes from Newfoundland (eastern Canada), 12 from Maryland (eastern United States), and 9 from the island of Great Britain, as well as 48 foxes of known North American origin maintained on an experimental farm in Novosibirsk, Russia. The full marker panel revealed 22 haplotypes among these red foxes, whereas the 2 previously known markers alone would have identified only 10 haplotypes. The haplotypes from the 4 populations clustered primarily by continent, but unidirectional gene flow from Great Britain and farm populations may influence haplotype diversity in the Maryland population. The development of new markers has increased the resolution at which red fox Y-chromosome diversity can be analyzed and provides insight into the contribution of males to red fox population diversity and patterns of phylogeography. © The American Genetic Association 2017. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

HUBBLE SPACE TELESCOPE PHOTOMETRY OF GLOBULAR CLUSTERS IN M81

International Nuclear Information System (INIS)

Nantais, Julie B.; Huchra, John P.; Zezas, Andreas; Gazeas, Kosmas; Strader, Jay

2011-01-01

We perform aperture photometry and profile fitting on 419 globular cluster (GC) candidates with m V ≤ 23 mag identified in Hubble Space Telescope/Advanced Camera for Surveys BVI imaging, and estimate the effective radii of the clusters. We identify 85 previously known spectroscopically confirmed clusters, and newly identify 136 objects as good cluster candidates within the 3σ color and size ranges defined by the spectroscopically confirmed clusters, yielding a total of 221 probable GCs. The luminosity function peak for the 221 probable GCs with estimated total dereddening applied is V ∼ (20.26 ± 0.13) mag, corresponding to a distance of ∼3.7 ± 0.3 Mpc. The blue and red GC candidates, and the metal-rich and metal-poor spectroscopically confirmed clusters, respectively, are similar in half-light radius. Red confirmed clusters are about 6% larger in median half-light radius than blue confirmed clusters, and red and blue good GC candidates are nearly identical in half-light radius. The total population of confirmed and 'good' candidates shows an increase in half-light radius as a function of galactocentric distance.

Genomic signal processing for DNA sequence clustering.

Science.gov (United States)

Mendizabal-Ruiz, Gerardo; Román-Godínez, Israel; Torres-Ramos, Sulema; Salido-Ruiz, Ricardo A; Vélez-Pérez, Hugo; Morales, J Alejandro

2018-01-01

Genomic signal processing (GSP) methods which convert DNA data to numerical values have recently been proposed, which would offer the opportunity of employing existing digital signal processing methods for genomic data. One of the most used methods for exploring data is cluster analysis which refers to the unsupervised classification of patterns in data. In this paper, we propose a novel approach for performing cluster analysis of DNA sequences that is based on the use of GSP methods and the K-means algorithm. We also propose a visualization method that facilitates the easy inspection and analysis of the results and possible hidden behaviors. Our results support the feasibility of employing the proposed method to find and easily visualize interesting features of sets of DNA data.

MEASURING THE ULTIMATE HALO MASS OF GALAXY CLUSTERS: REDSHIFTS AND MASS PROFILES FROM THE HECTOSPEC CLUSTER SURVEY (HeCS)

International Nuclear Information System (INIS)

Rines, Kenneth; Geller, Margaret J.; Kurtz, Michael J.; Diaferio, Antonaldo

2013-01-01

The infall regions of galaxy clusters represent the largest gravitationally bound structures in a ΛCDM universe. Measuring cluster mass profiles into the infall regions provides an estimate of the ultimate mass of these halos. We use the caustic technique to measure cluster mass profiles from galaxy redshifts obtained with the Hectospec Cluster Survey (HeCS), an extensive spectroscopic survey of galaxy clusters with MMT/Hectospec. We survey 58 clusters selected by X-ray flux at 0.1 200 , a new observational cosmological test in essential agreement with simulations. Summed profiles binned in M 200 and in L X demonstrate that the predicted Navarro-Frenk-White form of the density profile is a remarkably good representation of the data in agreement with weak lensing results extending to large radius. The concentration of these summed profiles is also consistent with theoretical predictions.

The First Symbiont-Free Genome Sequence of Marine Red Alga, Susabi-nori (Pyropia yezoensis)

Science.gov (United States)

Nakamura, Yoji; Sasaki, Naobumi; Kobayashi, Masahiro; Ojima, Nobuhiko; Yasuike, Motoshige; Shigenobu, Yuya; Satomi, Masataka; Fukuma, Yoshiya; Shiwaku, Koji; Tsujimoto, Atsumi; Kobayashi, Takanori; Nakayama, Ichiro; Ito, Fuminari; Nakajima, Kazuhiro; Sano, Motohiko; Wada, Tokio; Kuhara, Satoru; Inouye, Kiyoshi; Gojobori, Takashi; Ikeo, Kazuho

2013-01-01

Nori, a marine red alga, is one of the most profitable mariculture crops in the world. However, the biological properties of this macroalga are poorly understood at the molecular level. In this study, we determined the draft genome sequence of susabi-nori (Pyropia yezoensis) using next-generation sequencing platforms. For sequencing, thalli of P. yezoensis were washed to remove bacteria attached on the cell surface and enzymatically prepared as purified protoplasts. The assembled contig size of the P. yezoensis nuclear genome was approximately 43 megabases (Mb), which is an order of magnitude smaller than the previously estimated genome size. A total of 10,327 gene models were predicted and about 60% of the genes validated lack introns and the other genes have shorter introns compared to large-genome algae, which is consistent with the compact size of the P. yezoensis genome. A sequence homology search showed that 3,611 genes (35%) are functionally unknown and only 2,069 gene groups are in common with those of the unicellular red alga, Cyanidioschyzon merolae. As color trait determinants of red algae, light-harvesting genes involved in the phycobilisome were predicted from the P. yezoensis nuclear genome. In particular, we found a second homolog of phycobilisome-degradation gene, which is usually chloroplast-encoded, possibly providing a novel target for color fading of susabi-nori in aquaculture. These findings shed light on unexplained features of macroalgal genes and genomes, and suggest that the genome of P. yezoensis is a promising model genome of marine red algae. PMID:23536760

The first symbiont-free genome sequence of marine red alga, Susabi-nori (Pyropia yezoensis.

Directory of Open Access Journals (Sweden)

Yoji Nakamura

Full Text Available Nori, a marine red alga, is one of the most profitable mariculture crops in the world. However, the biological properties of this macroalga are poorly understood at the molecular level. In this study, we determined the draft genome sequence of susabi-nori (Pyropia yezoensis using next-generation sequencing platforms. For sequencing, thalli of P. yezoensis were washed to remove bacteria attached on the cell surface and enzymatically prepared as purified protoplasts. The assembled contig size of the P. yezoensis nuclear genome was approximately 43 megabases (Mb, which is an order of magnitude smaller than the previously estimated genome size. A total of 10,327 gene models were predicted and about 60% of the genes validated lack introns and the other genes have shorter introns compared to large-genome algae, which is consistent with the compact size of the P. yezoensis genome. A sequence homology search showed that 3,611 genes (35% are functionally unknown and only 2,069 gene groups are in common with those of the unicellular red alga, Cyanidioschyzon merolae. As color trait determinants of red algae, light-harvesting genes involved in the phycobilisome were predicted from the P. yezoensis nuclear genome. In particular, we found a second homolog of phycobilisome-degradation gene, which is usually chloroplast-encoded, possibly providing a novel target for color fading of susabi-nori in aquaculture. These findings shed light on unexplained features of macroalgal genes and genomes, and suggest that the genome of P. yezoensis is a promising model genome of marine red algae.

VEGAS-SSS. II. Comparing the globular cluster systems in NGC 3115 and NGC 1399 using VEGAS and FDS survey data. The quest for a common genetic heritage of globular cluster systems

Science.gov (United States)

Cantiello, Michele; D'Abrusco, Raffaele; Spavone, Marilena; Paolillo, Maurizio; Capaccioli, Massimo; Limatola, Luca; Grado, Aniello; Iodice, Enrica; Raimondo, Gabriella; Napolitano, Nicola; Blakeslee, John P.; Brocato, Enzo; Forbes, Duncan A.; Hilker, Michael; Mieske, Steffen; Peletier, Reynier; van de Ven, Glenn; Schipani, Pietro

2018-04-01

We analyze the globular cluster (GC) systems in two very different galaxies, NGC 3115 and NGC 1399. With the papers of this series, we aim at highlighting common and different properties in the GC systems in galaxies covering a wide range of parameter space. We compare the GCs in NGC 3115 and NGC 1399 as derived from the analysis of one square degree u-, g-, and i-band images taken with the VST telescope as part of the VST early-type galaxy survey (VEGAS) and Fornax deep survey (FDS). We selected GC candidates using as reference the morpho-photometric and color properties of confirmed GCs. The surface density maps of GCs in NGC 3115 reveal a morphology similar to the light profile of field stars; the same is true when blue and red GCs are taken separately. The GC maps for NGC 1399 are richer in structure and confirm the existence of an intra-cluster GC component. We confirm the presence of a spatial offset in the NGC 1399 GC centroid and find that the centroid of the GCs for NGC 3115 coincides well with the galaxy center. Both GC systems show unambiguous color bimodality in (g - i) and (u - i); the color-color relations of the two GC systems are slightly different with NGC 3115 appearing more linear than NGC 1399. The azimuthal average of the radial density profiles in both galaxies reveals a larger spatial extent for the total GCs population with respect to the galaxy surface brightness profile. For both galaxies, the red GCs have radial density profiles compatible with the galaxy light profile, while the radial profiles for blue GCs are shallower. As for the specific frequency of GCs, SN, we find it is a factor of two higher in NGC 1399 than for NGC 3115; this is mainly the result of extra blue GCs. By inspecting the radial behavior of the specific frequency, SN(red GCs, we find notable similarities between the trends for red GCs in the two targets. In spite of extremely different host environments, the red GCs in both cases appear

The Development Of Red Chili Agribusiness Cluster With Soft System Methodology (Ssm Approach In Garut, West Java

Directory of Open Access Journals (Sweden)

Sri Ayu Andayani

2016-12-01

Full Text Available Red chili is one of the commodities with high price fluctuation and gives influence to inflation. It happens due to the unsustainable supply of red chili from the central production centers to the market. Bank Indonesia (central bank initiates a cluster system to support price controlling and regional economic growth. In this regard, the study is conducted  in Garut regency, which is one of the centers of red chili plantation in West Java and uses as cluster development, and yet there are still many obstacles along the way. This paper has the objective to describe the problem which causes unsustainable production and affects industrial supplies systemically and also to analyze the existing partnerships in order to maintain the continuity of supply as an alternative solution.This study was designed qualitatively with case study method through a system approach namely soft system methodology (SSM. The results shows that the problems in the cluster of red chili are ranging from production planning to the delay of sales payment process which systemically interlinked and the collaboration of executors that have not been optimally implemented. This study offers solution for those problems accordance with change formulation of SSM and industrial emphasis on fairness, transparency and integrated optimization with the principle of production sustainability from all stakeholders through participative collaboration to maintain continuity of production.

New open cluster candidates discovered in the XSTPS-GAC survey

Science.gov (United States)

Guo, Jin-Cheng; Zhang, Hua-Wei; Zhang, Hui-Hua; Liu, Xiao-Wei; Yuan, Hai-Bo; Huang, Yang; Wang, Song; Chen, Li; Zhao, Hai-Bin; Liu, Ji-Feng; Chen, Bing-Qiu; Xiang, Mao-Sheng; Tian, Zhi-Jia; Huo, Zhi-Ying; Wang, Chun

2018-03-01

The Xuyi Schmidt Telescope Photometric Survey of the Galactic Anti-center (XSTPS-GAC) is a photometric sky survey that covers nearly 6000 deg2 towards the Galactic Anti-center (GAC) in the g, r, i bands. Half of its survey field is located on the Galactic Anti-center disk, which makes XSTPS-GAC highly suitable to search for new open clusters in the GAC region. In this paper, we report new open cluster candidates discovered in this survey, as well as properties of these open cluster candidates, such as age, distance and reddening, derived by isochrone fitting in the color-magnitude diagram (CMD). These open cluster candidates are stellar density peaks detected in the star density maps by applying the method from Koposov et al. Each candidate is inspected in terms of its true color image composed from three XSTPS-GAC band images. Then its CMD is checked, in order to identify whether the central region stars have a clear isochrone-like trend differing from background stars. The parameters derived from isochrone fitting for these candidates are mainly based on three band photometry of XSTPS-GAC. Moreover, when these new candidates are able to be seen clearly in 2MASS data, their parameters are also derived based on the 2MASS (J – H, J) CMD. There are a total of 320 known open clusters rediscovered and 24 new open cluster candidates discovered in this work. Furthermore, the parameters of these new candidates, as well as another 11 previously known open clusters, are properly determined for the first time.

VizieR Online Data Catalog: Clusters of galaxies in SDSS-III (Wen+, 2012)

Science.gov (United States)

Wen, Z. L.; Han, J. L.; Liu, F. S.

2012-06-01

Wen et al. (2009, Cat. J/ApJS/183/197) identified 39668 galaxy clusters from the SDSS DR6 by the discrimination of member galaxies of clusters using photometric redshifts of galaxies. Wen & Han (2011ApJ...734...68W) improved the method and successfully identified the high-redshift clusters from the deep fields of the Canada-France-Hawaii Telescope (CFHT) Wide survey, the CHFT Deep survey, the Cosmic Evolution Survey, and the Spitzer Wide-area InfraRed Extragalactic survey. Here, we follow and improve the algorithm to identify clusters from SDSS-III (SDSS Data Release 8; Aihara et al. 2011ApJS..193...29A, see Cat. II/306). (1 data file).

The Atacama Cosmology Telescope: Detection or Sunyaev-Zel'Dovich Decrement in Groups and Clusters Associated with Luminous Red Galaxies

Science.gov (United States)

Hand, Nick; Appel, John William; Battaglia, Nick; Bond, J. Richard; Das, Sudeep; Devlin, Mark J.; Dunkley, Joanna; Dunner, Rolando; Essinger-Hileman, Thomas; Fowler, Joseph W.;

THE CLUSTERED NATURE OF STAR FORMATION. PRE-MAIN-SEQUENCE CLUSTERS IN THE STAR-FORMING REGION NGC 602/N90 IN THE SMALL MAGELLANIC CLOUD

International Nuclear Information System (INIS)

Gouliermis, Dimitrios A.; Gennaro, Mario; Schmeja, Stefan; Dolphin, Andrew E.; Tognelli, Emanuele; Prada Moroni, Pier Giorgio

2012-01-01

Located at the tip of the wing of the Small Magellanic Cloud (SMC), the star-forming region NGC 602/N90 is characterized by the H II nebular ring N90 and the young cluster of pre-main-sequence (PMS) and early-type main-sequence stars NGC 602, located in the central area of the ring. We present a thorough cluster analysis of the stellar sample identified with Hubble Space Telescope/Advanced Camera for Surveys in the region. We show that apart from the central cluster low-mass PMS stars are congregated in 13 additional small, compact sub-clusters at the periphery of NGC 602, identified in terms of their higher stellar density with respect to the average background density derived from star counts. We find that the spatial distribution of the PMS stars is bimodal, with an unusually large fraction (∼60%) of the total population being clustered, while the remaining is diffusely distributed in the intercluster area, covering the whole central part of the region. From the corresponding color-magnitude diagrams we disentangle an age difference of ∼2.5 Myr between NGC 602 and the compact sub-clusters, which appear younger, on the basis of comparison of the brighter PMS stars with evolutionary models, which we accurately calculated for the metal abundance of the SMC. The diffuse PMS population appears to host stars as old as those in NGC 602. Almost all detected PMS sub-clusters appear to be centrally concentrated. When the complete PMS stellar sample, including both clustered and diffused stars, is considered in our cluster analysis, it appears as a single centrally concentrated stellar agglomeration, covering the whole central area of the region. Considering also the hot massive stars of the system, we find evidence that this agglomeration is hierarchically structured. Based on our findings, we propose a scenario according to which the region NGC 602/N90 experiences an active clustered star formation for the last ∼5 Myr. The central cluster NGC 602 was formed first

Weak-Lensing Calibration of a Stellar Mass-Based Mass Proxy for redMaPPer and Voronoi Tessellation Clusters in SDSS Stripe 82

Energy Technology Data Exchange (ETDEWEB)

Pereira, Maria E.S. [Rio de Janeiro, CBPF; Soares-Santos, Marcelle [Fermilab; Makler, Martin [Rio de Janeiro, CBPF; Annis, James [Fermilab; Lin, Huan [Fermilab; Palmese, Antonella [Fermilab; Vitorelli, André Z. [Sao Paulo, Inst. Astron. Geofis.; Welch, Brian [Fermilab; Caminha, Gabriel B. [Bologna Observ.; Erben, Thomas [Argelander Inst. Astron.; Moraes, Bruno [University Coll. London; Shan, Huanyuan [Argelander Inst. Astron.

2017-08-10

We present the first weak lensing calibration of $\\mu_{\\star}$, a new galaxy cluster mass proxy corresponding to the total stellar mass of red and blue members, in two cluster samples selected from the SDSS Stripe 82 data: 230 redMaPPer clusters at redshift $0.1\\leq z<0.33$ and 136 Voronoi Tessellation (VT) clusters at $0.1 \\leq z < 0.6$. We use the CS82 shear catalog and stack the clusters in $\\mu_{\\star}$ bins to measure a mass-observable power law relation. For redMaPPer clusters we obtain $M_0 = (1.77 \\pm 0.36) \\times 10^{14}h^{-1} M_{\\odot}$, $\\alpha = 1.74 \\pm 0.62$. For VT clusters, we find $M_0 = (4.31 \\pm 0.89) \\times 10^{14}h^{-1} M_{\\odot}$, $\\alpha = 0.59 \\pm 0.54$ and $M_0 = (3.67 \\pm 0.56) \\times 10^{14}h^{-1} M_{\\odot}$, $\\alpha = 0.68 \\pm 0.49$ for a low and a high redshift bin, respectively. Our results are consistent, internally and with the literature, indicating that our method can be applied to any cluster finding algorithm. In particular, we recommend that $\\mu_{\\star}$ be used as the mass proxy for VT clusters. Catalogs including $\\mu_{\\star}$ measurements will enable its use in studies of galaxy evolution in clusters and cluster cosmology.

Constraining the Scatter in the Mass-Richness Relation of maxBCG Clusters With Weak Lensing and X-ray Data

Energy Technology Data Exchange (ETDEWEB)

Rozo, Eduardo; /Ohio State U.; Rykoff, Eli S.; /UC, Santa Barbara; Evrard, August; /Michigan U.; Becker, Matthew R.; /Chicago U.; McKay, Timothy; /Michigan U.; Wechsler, Risa H.; /SLAC; Koester, Benjamin P.; /Chicago U. /KICP, Chicago; Hao, Jiangang; /Michigan U.; Hansen, Sarah; /Chicago U. /KICP, Chicago; Sheldon, Erin; /New York U.; Johnston, David; /Houston U.; Annis, James T.; /Fermilab; Frieman, Joshua A.; /Chicago U. /KICP, Chicago /Fermilab

2009-08-03

We measure the logarithmic scatter in mass at fixed richness for clusters in the maxBCG cluster catalog, an optically selected cluster sample drawn from SDSS imaging data. Our measurement is achieved by demanding consistency between available weak lensing and X-ray measurements of the maxBCG clusters, and the X-ray luminosity-mass relation inferred from the 400d X-ray cluster survey, a flux limited X-ray cluster survey. We find {sigma}{sub lnM|N{sub 200}} = 0.45{sub -0.18}{sup +0.20} (95%CL) at N{sub 200} {approx} 40, where N{sub 200} is the number of red sequence galaxies in a cluster. As a byproduct of our analysis, we also obtain a constraint on the correlation coefficient between lnL{sub X} and lnM at fixed richness, which is best expressed as a lower limit, r{sub L,M|N} {ge} 0.85 (95% CL). This is the first observational constraint placed on a correlation coefficient involving two different cluster mass tracers. We use our results to produce a state of the art estimate of the halo mass function at z = 0.23 - the median redshift of the maxBCG cluster sample - and find that it is consistent with the WMAP5 cosmology. Both the mass function data and its covariance matrix are presented.

The Gaia-ESO Survey: open clusters in Gaia-DR1 . A way forward to stellar age calibration

Science.gov (United States)

Randich, S.; Tognelli, E.; Jackson, R.; Jeffries, R. D.; Degl'Innocenti, S.; Pancino, E.; Re Fiorentin, P.; Spagna, A.; Sacco, G.; Bragaglia, A.; Magrini, L.; Prada Moroni, P. G.; Alfaro, E.; Franciosini, E.; Morbidelli, L.; Roccatagliata, V.; Bouy, H.; Bravi, L.; Jiménez-Esteban, F. M.; Jordi, C.; Zari, E.; Tautvaišiene, G.; Drazdauskas, A.; Mikolaitis, S.; Gilmore, G.; Feltzing, S.; Vallenari, A.; Bensby, T.; Koposov, S.; Korn, A.; Lanzafame, A.; Smiljanic, R.; Bayo, A.; Carraro, G.; Costado, M. T.; Heiter, U.; Hourihane, A.; Jofré, P.; Lewis, J.; Monaco, L.; Prisinzano, L.; Sbordone, L.; Sousa, S. G.; Worley, C. C.; Zaggia, S.

2018-05-01

Context. Determination and calibration of the ages of stars, which heavily rely on stellar evolutionary models, are very challenging, while representing a crucial aspect in many astrophysical areas. Aims: We describe the methodologies that, taking advantage of Gaia-DR1 and the Gaia-ESO Survey data, enable the comparison of observed open star cluster sequences with stellar evolutionary models. The final, long-term goal is the exploitation of open clusters as age calibrators. Methods: We perform a homogeneous analysis of eight open clusters using the Gaia-DR1 TGAS catalogue for bright members and information from the Gaia-ESO Survey for fainter stars. Cluster membership probabilities for the Gaia-ESO Survey targets are derived based on several spectroscopic tracers. The Gaia-ESO Survey also provides the cluster chemical composition. We obtain cluster parallaxes using two methods. The first one relies on the astrometric selection of a sample of bona fide members, while the other one fits the parallax distribution of a larger sample of TGAS sources. Ages and reddening values are recovered through a Bayesian analysis using the 2MASS magnitudes and three sets of standard models. Lithium depletion boundary (LDB) ages are also determined using literature observations and the same models employed for the Bayesian analysis. Results: For all but one cluster, parallaxes derived by us agree with those presented in Gaia Collaboration (2017, A&A, 601, A19), while a discrepancy is found for NGC 2516; we provide evidence supporting our own determination. Inferred cluster ages are robust against models and are generally consistent with literature values. Conclusions: The systematic parallax errors inherent in the Gaia DR1 data presently limit the precision of our results. Nevertheless, we have been able to place these eight clusters onto the same age scale for the first time, with good agreement between isochronal and LDB ages where there is overlap. Our approach appears promising

Bayesian clustering of DNA sequences using Markov chains and a stochastic partition model.

Science.gov (United States)

Jääskinen, Väinö; Parkkinen, Ville; Cheng, Lu; Corander, Jukka

2014-02-01

In many biological applications it is necessary to cluster DNA sequences into groups that represent underlying organismal units, such as named species or genera. In metagenomics this grouping needs typically to be achieved on the basis of relatively short sequences which contain different types of errors, making the use of a statistical modeling approach desirable. Here we introduce a novel method for this purpose by developing a stochastic partition model that clusters Markov chains of a given order. The model is based on a Dirichlet process prior and we use conjugate priors for the Markov chain parameters which enables an analytical expression for comparing the marginal likelihoods of any two partitions. To find a good candidate for the posterior mode in the partition space, we use a hybrid computational approach which combines the EM-algorithm with a greedy search. This is demonstrated to be faster and yield highly accurate results compared to earlier suggested clustering methods for the metagenomics application. Our model is fairly generic and could also be used for clustering of other types of sequence data for which Markov chains provide a reasonable way to compress information, as illustrated by experiments on shotgun sequence type data from an Escherichia coli strain.

Question-answer sequences in survey interviews

NARCIS (Netherlands)

Dijkstra, W.; Ongena, Y.P.

2006-01-01

Interaction analysis was used to analyze a total of 14,265 question-answer sequences of (Q-A Sequences) 80 questions that originated from two face-to-face and three telephone surveys. The analysis was directed towards the causes and effects of particular interactional problems. Our results showed

Optical study of the DAFT/FADA galaxy cluster survey

Science.gov (United States)

Martinet, N.; Durret, F.; Clowe, D.; Adami, C.

2013-11-01

DAFT/FADA (Dark energy American French Team) is a large survey of ˜90 high redshift (0.42×10^{14} M_{⊙}) clusters with HST weak lensing oriented data, plus BVRIZJ 4m ground based follow up to compute photometric redshifts. The main goals of this survey are to constrain dark energy parameters using weak lensing tomography and to study a large homogeneous sample of high redshift massive clusters. We will briefly review the latest results of this optical survey, focusing on two ongoing works: the calculation of galaxy luminosity functions from photometric redshift catalogs and the weak lensing analysis of ground based data.

Diagnosis and management of transthyretin familial amyloid polyneuropathy in Japan: red-flag symptom clusters and treatment algorithm.

Science.gov (United States)

Sekijima, Yoshiki; Ueda, Mitsuharu; Koike, Haruki; Misawa, Sonoko; Ishii, Tomonori; Ando, Yukio

2018-01-17

Hereditary ATTR (ATTRm) amyloidosis (also called transthyretin-type familial amyloid polyneuropathy [ATTR-FAP]) is an autosomal-dominant, adult-onset, rare systemic disorder predominantly characterized by irreversible, progressive, and persistent peripheral nerve damage. TTR gene mutations (e.g. replacement of valine with methionine at position 30 [Val30Met (p.Val50Met)]) lead to destabilization and dissociation of TTR tetramers into variant TTR monomers, which form amyloid fibrils that deposit in peripheral nerves and various organs, giving rise to peripheral and autonomic neuropathy and several non-disease specific symptoms.Phenotypic and genetic variability and non-disease-specific symptoms often delay diagnosis and lead to misdiagnosis. Red-flag symptom clusters simplify diagnosis globally. However, in Japan, types of TTR variants, age of onset, penetrance, and clinical symptoms of Val30Met are more varied than in other countries. Hence, development of a Japan-specific red-flag symptom cluster is warranted. Presence of progressive peripheral sensory-motor polyneuropathy and ≥1 red-flag sign/symptom (e.g. family history, autonomic dysfunction, cardiac involvement, carpal tunnel syndrome, gastrointestinal disturbances, unexplained weight loss, and immunotherapy resistance) suggests ATTR-FAP. Outside of Japan, pharmacotherapeutic options are first-line therapy. However, because of positive outcomes (better life expectancy and higher survival rates) with living donor transplant in Japan, liver transplantation remains first-line treatment, necessitating a Japan-specific treatment algorithm.Herein, we present a consolidated review of the ATTR-FAP Val30Met landscape in Japan and summarize findings from a medical advisory board meeting held in Tokyo on 18th August 2016, at which a Japan-specific ATTR-FAP red-flag symptom cluster and treatment algorithm was developed. Beside liver transplantation, a TTR-stabilizing agent (e.g. tafamidis) is a treatment option. Early

Significance of flow clustering and sequencing on sediment transport: 1D sediment transport modelling

Science.gov (United States)

Hassan, Kazi; Allen, Deonie; Haynes, Heather

2016-04-01

This paper considers 1D hydraulic model data on the effect of high flow clusters and sequencing on sediment transport. Using observed flow gauge data from the River Caldew, England, a novel stochastic modelling approach was developed in order to create alternative 50 year flow sequences. Whilst the observed probability density of gauge data was preserved in all sequences, the order in which those flows occurred was varied using the output from a Hidden Markov Model (HMM) with generalised Pareto distribution (GP). In total, one hundred 50 year synthetic flow series were generated and used as the inflow boundary conditions for individual flow series model runs using the 1D sediment transport model HEC-RAS. The model routed graded sediment through the case study river reach to define the long-term morphological changes. Comparison of individual simulations provided a detailed understanding of the sensitivity of channel capacity to flow sequence. Specifically, each 50 year synthetic flow sequence was analysed using a 3-month, 6-month or 12-month rolling window approach and classified for clusters in peak discharge. As a cluster is described as a temporal grouping of flow events above a specified threshold, the threshold condition used herein is considered as a morphologically active channel forming discharge event. Thus, clusters were identified for peak discharges in excess of 10%, 20%, 50%, 100% and 150% of the 1 year Return Period (RP) event. The window of above-peak flows also required cluster definition and was tested for timeframes 1, 2, 10 and 30 days. Subsequently, clusters could be described in terms of the number of events, maximum peak flow discharge, cumulative flow discharge and skewness (i.e. a description of the flow sequence). The model output for each cluster was analysed for the cumulative flow volume and cumulative sediment transport (mass). This was then compared to the total sediment transport of a single flow event of equivalent flow volume

SEARCH FOR RED DWARF STARS IN GLOBULAR CLUSTER NGC 6397

Science.gov (United States)

2002-01-01

Left A NASA Hubble Space Telescope image of a small region (1.4 light-years across) in the globular star cluster NGC 6397. Simulated stars (diamonds) have been added to this view of the same region of the cluster to illustrate what astronomers would have expected to see if faint red dwarf stars were abundant in the Milky Way Galaxy. The field would then contain 500 stars, according to theoretical calculations. Right The unmodified HST image shows far fewer stars than would be expected, according to popular theories of star formation. HST resolves about 200 stars. The stellar density is so low that HST can literally see right through the cluster and resolve far more distant background galaxies. From this observation, scientists have identified the surprising cutoff point below which nature apparently doesn't make many stars smaller that 1/5 the mass of our Sun. These HST findings provide new insights into star formation in our Galaxy. Technical detail:The globular cluster NGC 6397, one of the nearest and densest agglomerations of stars, is located 7,200 light-years away in the southern constellation Ara. This visible-light picture was taken on March 3, 1994 with the Wide Field Planetary Camera 2, as part the HST parallel observing program. Credit: F. Paresce, ST ScI and ESA and NASA

RELICS: Strong Lens Models for Five Galaxy Clusters from the Reionization Lensing Cluster Survey

Science.gov (United States)

Cerny, Catherine; Sharon, Keren; Andrade-Santos, Felipe; Avila, Roberto J.; Bradač, Maruša; Bradley, Larry D.; Carrasco, Daniela; Coe, Dan; Czakon, Nicole G.; Dawson, William A.; Frye, Brenda L.; Hoag, Austin; Huang, Kuang-Han; Johnson, Traci L.; Jones, Christine; Lam, Daniel; Lovisari, Lorenzo; Mainali, Ramesh; Oesch, Pascal A.; Ogaz, Sara; Past, Matthew; Paterno-Mahler, Rachel; Peterson, Avery; Riess, Adam G.; Rodney, Steven A.; Ryan, Russell E.; Salmon, Brett; Sendra-Server, Irene; Stark, Daniel P.; Strolger, Louis-Gregory; Trenti, Michele; Umetsu, Keiichi; Vulcani, Benedetta; Zitrin, Adi

2018-06-01

Strong gravitational lensing by galaxy clusters magnifies background galaxies, enhancing our ability to discover statistically significant samples of galaxies at {\\boldsymbol{z}}> 6, in order to constrain the high-redshift galaxy luminosity functions. Here, we present the first five lens models out of the Reionization Lensing Cluster Survey (RELICS) Hubble Treasury Program, based on new HST WFC3/IR and ACS imaging of the clusters RXC J0142.9+4438, Abell 2537, Abell 2163, RXC J2211.7–0349, and ACT-CLJ0102–49151. The derived lensing magnification is essential for estimating the intrinsic properties of high-redshift galaxy candidates, and properly accounting for the survey volume. We report on new spectroscopic redshifts of multiply imaged lensed galaxies behind these clusters, which are used as constraints, and detail our strategy to reduce systematic uncertainties due to lack of spectroscopic information. In addition, we quantify the uncertainty on the lensing magnification due to statistical and systematic errors related to the lens modeling process, and find that in all but one cluster, the magnification is constrained to better than 20% in at least 80% of the field of view, including statistical and systematic uncertainties. The five clusters presented in this paper span the range of masses and redshifts of the clusters in the RELICS program. We find that they exhibit similar strong lensing efficiencies to the clusters targeted by the Hubble Frontier Fields within the WFC3/IR field of view. Outputs of the lens models are made available to the community through the Mikulski Archive for Space Telescopes.

A DEEP, WIDE-FIELD Hα SURVEY OF NEARBY CLUSTERS OF GALAXIES: DATA

International Nuclear Information System (INIS)

Sakai, Shoko; Kennicutt, Robert C. Jr.; Moss, Chris

2012-01-01

We present the results of a wide-field Hα imaging survey of eight nearby (z = 0.02-0.03) Abell clusters. We have measured Hα fluxes and equivalent widths for 465 galaxies, of which 360 are new detections. The survey was designed to obtain complete emission-line-selected inventories of star-forming galaxies in the inner regions of these clusters, extending to star formation rates below 0.1 M ☉ yr –1 . This paper describes the observations, data processing, and source identification procedures, and presents an Hα and R-band catalog of detected cluster members and other candidates. Future papers in the series will use these data to study the completeness of spectroscopically based star formation surveys, and to quantify the effects of cluster environment on the present-day populations of star-forming galaxies. The data will also provide a valuable foundation for imaging surveys of redshifted Hα emission in more distant clusters.

The clustering of quasars from an objective-prism survey

International Nuclear Information System (INIS)

Webster, A.

1982-01-01

The positions and redshifts of 108 quasars from the Cerro Tololo objective-prism survey are subjected to Fourier Power Spectrum Analysis in a search for clustering in their spatial distribution. It is found that, on the whole, these quasars are not clustered but are scattered in space independently at random. The sole exception is a group of four quasars at z = 0.37 which has a low probability of being a chance event and which, with a size of about 100 Mpc, may therefore be the largest known structure in the Universe. The conclusions disagree with Arp's analysis of this catalogue: his 'clouds of quasars' ejected by certain low-redshift galaxies, for example, are attributable to sensitivity variations among the different plates of the survey. It is shown that analysis of deeper surveys is likely to show up quasar clusters even at high redshift, and could therefore provide a useful new cosmological probe. (author)

CLUSTER LENSING PROFILES DERIVED FROM A REDSHIFT ENHANCEMENT OF MAGNIFIED BOSS-SURVEY GALAXIES

International Nuclear Information System (INIS)

Coupon, Jean; Umetsu, Keiichi; Broadhurst, Tom

2013-01-01

We report the first detection of a redshift-depth enhancement of background galaxies magnified by foreground clusters. Using 300,000 BOSS survey galaxies with accurate spectroscopic redshifts, we measure their mean redshift depth behind four large samples of optically selected clusters from the Sloan Digital Sky Survey (SDSS) surveys, totaling 5000-15,000 clusters. A clear trend of increasing mean redshift toward the cluster centers is found, averaged over each of the four cluster samples. In addition, we find similar but noisier behavior for an independent X-ray sample of 158 clusters lying in the foreground of the current BOSS sky area. By adopting the mass-richness relationships appropriate for each survey, we compare our results with theoretical predictions for each of the four SDSS cluster catalogs. The radial form of this redshift enhancement is well fitted by a richness-to-mass weighted composite Navarro-Frenk-White profile with an effective mass ranging between M 200 ∼ 1.4-1.8 × 10 14 M ☉ for the optically detected cluster samples, and M 200 ∼ 5.0 × 10 14 M ☉ for the X-ray sample. This lensing detection helps to establish the credibility of these SDSS cluster surveys, and provides a normalization for their respective mass-richness relations. In the context of the upcoming bigBOSS, Subaru Prime Focus Spectrograph, and EUCLID-NISP spectroscopic surveys, this method represents an independent means of deriving the masses of cluster samples for examining the cosmological evolution, and provides a relatively clean consistency check of weak-lensing measurements, free from the systematic limitations of shear calibration

Performance of small cluster surveys and the clustered LQAS design to estimate local-level vaccination coverage in Mali.

Science.gov (United States)

Minetti, Andrea; Riera-Montes, Margarita; Nackers, Fabienne; Roederer, Thomas; Koudika, Marie Hortense; Sekkenes, Johanne; Taconet, Aurore; Fermon, Florence; Touré, Albouhary; Grais, Rebecca F; Checchi, Francesco

2012-10-12

Estimation of vaccination coverage at the local level is essential to identify communities that may require additional support. Cluster surveys can be used in resource-poor settings, when population figures are inaccurate. To be feasible, cluster samples need to be small, without losing robustness of results. The clustered LQAS (CLQAS) approach has been proposed as an alternative, as smaller sample sizes are required. We explored (i) the efficiency of cluster surveys of decreasing sample size through bootstrapping analysis and (ii) the performance of CLQAS under three alternative sampling plans to classify local VC, using data from a survey carried out in Mali after mass vaccination against meningococcal meningitis group A. VC estimates provided by a 10 × 15 cluster survey design were reasonably robust. We used them to classify health areas in three categories and guide mop-up activities: i) health areas not requiring supplemental activities; ii) health areas requiring additional vaccination; iii) health areas requiring further evaluation. As sample size decreased (from 10 × 15 to 10 × 3), standard error of VC and ICC estimates were increasingly unstable. Results of CLQAS simulations were not accurate for most health areas, with an overall risk of misclassification greater than 0.25 in one health area out of three. It was greater than 0.50 in one health area out of two under two of the three sampling plans. Small sample cluster surveys (10 × 15) are acceptably robust for classification of VC at local level. We do not recommend the CLQAS method as currently formulated for evaluating vaccination programmes.

ON THE DEARTH OF COMPACT, MASSIVE, RED SEQUENCE GALAXIES IN THE LOCAL UNIVERSE

International Nuclear Information System (INIS)

Taylor, Edward N.; Franx, Marijn; Brinchmann, Jarle; Glazebrook, Karl; Van der Wel, Arjen; Van Dokkum, Pieter G

2010-01-01

We set out to test the claim that the recently identified population of compact, massive, and quiescent galaxies at z ∼ 2.3 must undergo significant size evolution to match the properties of galaxies found in the local universe. Using data from the Sloan Digital Sky Survey (SDSS; Data Release 7), we have conducted a search for local red sequence galaxies with sizes and masses comparable to those found at z ∼ 2.3. The SDSS spectroscopic target selection algorithm excludes high surface brightness objects; we show that this makes incompleteness a concern for such massive, compact galaxies, particularly for low redshifts (z ∼ * >10 10.7 M sun (∼5 x 10 10 M sun ) red sequence galaxies at 0.066 spec 5000. This result cannot be explained by incompleteness: in the 0.066 75% complete for galaxies with the sizes and masses seen at high redshift, although for the very smallest galaxies it may be as low as ∼20%. In order to confirm that the absence of such compact massive galaxies in SDSS is not produced by spectroscopic selection effects, we have also looked for such galaxies in the basic SDSS photometric catalog, using photometric redshifts. While we do find signs of a slight bias against massive, compact galaxies, this analysis suggests that the SDSS spectroscopic sample is missing at most a few objects in the regime we consider. Accepting the high-redshift results, it is clear that massive galaxies must undergo significant structural evolution over z ∼< 2 in order to match the population seen in the local universe. Our results suggest that a highly stochastic mechanism (e.g., major mergers) cannot be the primary driver of this strong size evolution.

Stable structures of Al510–800 clusters and lowest energy sequence of truncated octahedral Al clusters up to 10,000 atoms

International Nuclear Information System (INIS)

Wu, Xia; He, Chengdong

2012-01-01

Highlights: ► The stable structures of Al 510–800 clusters are obtained with the NP-B potential. ► Al 510–800 clusters adopt truncated octahedral (TO) growth pattern based on complete TOs at Al 405 , Al 586 , and Al 711 . ► The lowest energy sequence of complete TOs up to the size 10,000 is proposed. -- Abstract: The stable structures of Al 510–800 clusters are obtained using dynamic lattice searching with constructed cores (DLSc) method by the NP-B potential. According to the structural growth rule, octahedra and truncated octahedra (TO) configurations are adopted as the inner cores in DLSc method. The results show that in the optimized structures two complete TO structures are found at Al 586 and Al 711 . Furthermore, Al 510–800 clusters adopt TO growth pattern on complete TOs at Al 405 , Al 586 , and Al 711 , and the configurations of the surface atoms are investigated. On the other hand, Al clusters with complete TO motifs are studied up to the size 10,000 by the geometrical construction method. The structural characteristics of complete TOs are denoted by the term “family”, and the growth sequence of Al clusters is investigated. The lowest energy sequence of complete TOs is proposed.

SPT-GMOS: A GEMINI/GMOS-SOUTH SPECTROSCOPIC SURVEY OF GALAXY CLUSTERS IN THE SPT-SZ SURVEY

International Nuclear Information System (INIS)

Bayliss, M. B.; Ruel, J.; Stubbs, C. W.; Allen, S. W.; Applegate, D. E.; Ashby, M. L. N.; Bautz, M.; Benson, B. A.; Carlstrom, J. E.; Chang, C. L.; Crawford, T. M.; Bleem, L. E.; Bocquet, S.; Brodwin, M.; Capasso, R.; Chiu, I.; Cho, H-M.; Clocchiatti, A.; Crites, A. T.; Haan, T. de

2016-01-01

We present the results of SPT-GMOS, a spectroscopic survey with the Gemini Multi-Object Spectrograph (GMOS) on Gemini South. The targets of SPT-GMOS are galaxy clusters identified in the SPT-SZ survey, a millimeter-wave survey of 2500 deg 2 of the southern sky using the South Pole Telescope (SPT). Multi-object spectroscopic observations of 62 SPT-selected galaxy clusters were performed between 2011 January and 2015 December, yielding spectra with radial velocity measurements for 2595 sources. We identify 2243 of these sources as galaxies, and 352 as stars. Of the galaxies, we identify 1579 as members of SPT-SZ galaxy clusters. The primary goal of these observations was to obtain spectra of cluster member galaxies to estimate cluster redshifts and velocity dispersions. We describe the full spectroscopic data set and resulting data products, including galaxy redshifts, cluster redshifts, and velocity dispersions, and measurements of several well-known spectral indices for each galaxy: the equivalent width, W , of [O ii] λλ 3727, 3729 and H- δ , and the 4000 Å break strength, D4000. We use the spectral indices to classify galaxies by spectral type (i.e., passive, post-starburst, star-forming), and we match the spectra against photometric catalogs to characterize spectroscopically observed cluster members as a function of brightness (relative to m ⋆ ). Finally, we report several new measurements of redshifts for ten bright, strongly lensed background galaxies in the cores of eight galaxy clusters. Combining the SPT-GMOS data set with previous spectroscopic follow-up of SPT-SZ galaxy clusters results in spectroscopic measurements for >100 clusters, or ∼20% of the full SPT-SZ sample.

SPT-GMOS: A Gemini/GMOS-South Spectroscopic Survey of Galaxy Clusters in the SPT-SZ Survey

Science.gov (United States)

Bayliss, M. B.; Ruel, J.; Stubbs, C. W.; Allen, S. W.; Applegate, D. E.; Ashby, M. L. N.; Bautz, M.; Benson, B. A.; Bleem, L. E.; Bocquet, S.; Brodwin, M.; Capasso, R.; Carlstrom, J. E.; Chang, C. L.; Chiu, I.; Cho, H.-M.; Clocchiatti, A.; Crawford, T. M.; Crites, A. T.; de Haan, T.; Desai, S.; Dietrich, J. P.; Dobbs, M. A.; Doucouliagos, A. N.; Foley, R. J.; Forman, W. R.; Garmire, G. P.; George, E. M.; Gladders, M. D.; Gonzalez, A. H.; Gupta, N.; Halverson, N. W.; Hlavacek-Larrondo, J.; Hoekstra, H.; Holder, G. P.; Holzapfel, W. L.; Hou, Z.; Hrubes, J. D.; Huang, N.; Jones, C.; Keisler, R.; Knox, L.; Lee, A. T.; Leitch, E. M.; von der Linden, A.; Luong-Van, D.; Mantz, A.; Marrone, D. P.; McDonald, M.; McMahon, J. J.; Meyer, S. S.; Mocanu, L. M.; Mohr, J. J.; Murray, S. S.; Padin, S.; Pryke, C.; Rapetti, D.; Reichardt, C. L.; Rest, A.; Ruhl, J. E.; Saliwanchik, B. R.; Saro, A.; Sayre, J. T.; Schaffer, K. K.; Schrabback, T.; Shirokoff, E.; Song, J.; Spieler, H. G.; Stalder, B.; Stanford, S. A.; Staniszewski, Z.; Stark, A. A.; Story, K. T.; Vanderlinde, K.; Vieira, J. D.; Vikhlinin, A.; Williamson, R.; Zenteno, A.

2016-11-01

We present the results of SPT-GMOS, a spectroscopic survey with the Gemini Multi-Object Spectrograph (GMOS) on Gemini South. The targets of SPT-GMOS are galaxy clusters identified in the SPT-SZ survey, a millimeter-wave survey of 2500 deg2 of the southern sky using the South Pole Telescope (SPT). Multi-object spectroscopic observations of 62 SPT-selected galaxy clusters were performed between 2011 January and 2015 December, yielding spectra with radial velocity measurements for 2595 sources. We identify 2243 of these sources as galaxies, and 352 as stars. Of the galaxies, we identify 1579 as members of SPT-SZ galaxy clusters. The primary goal of these observations was to obtain spectra of cluster member galaxies to estimate cluster redshifts and velocity dispersions. We describe the full spectroscopic data set and resulting data products, including galaxy redshifts, cluster redshifts, and velocity dispersions, and measurements of several well-known spectral indices for each galaxy: the equivalent width, W, of [O II] λλ3727, 3729 and H-δ, and the 4000 Å break strength, D4000. We use the spectral indices to classify galaxies by spectral type (i.e., passive, post-starburst, star-forming), and we match the spectra against photometric catalogs to characterize spectroscopically observed cluster members as a function of brightness (relative to m⋆). Finally, we report several new measurements of redshifts for ten bright, strongly lensed background galaxies in the cores of eight galaxy clusters. Combining the SPT-GMOS data set with previous spectroscopic follow-up of SPT-SZ galaxy clusters results in spectroscopic measurements for >100 clusters, or ∼20% of the full SPT-SZ sample.

Stepwise threshold clustering: a new method for genotyping MHC loci using next-generation sequencing technology.

Directory of Open Access Journals (Sweden)

William E Stutz

Full Text Available Genes of the vertebrate major histocompatibility complex (MHC are of great interest to biologists because of their important role in immunity and disease, and their extremely high levels of genetic diversity. Next generation sequencing (NGS technologies are quickly becoming the method of choice for high-throughput genotyping of multi-locus templates like MHC in non-model organisms. Previous approaches to genotyping MHC genes using NGS technologies suffer from two problems:1 a "gray zone" where low frequency alleles and high frequency artifacts can be difficult to disentangle and 2 a similar sequence problem, where very similar alleles can be difficult to distinguish as two distinct alleles. Here were present a new method for genotyping MHC loci--Stepwise Threshold Clustering (STC--that addresses these problems by taking full advantage of the increase in sequence data provided by NGS technologies. Unlike previous approaches for genotyping MHC with NGS data that attempt to classify individual sequences as alleles or artifacts, STC uses a quasi-Dirichlet clustering algorithm to cluster similar sequences at increasing levels of sequence similarity. By applying frequency and similarity based criteria to clusters rather than individual sequences, STC is able to successfully identify clusters of sequences that correspond to individual or similar alleles present in the genomes of individual samples. Furthermore, STC does not require duplicate runs of all samples, increasing the number of samples that can be genotyped in a given project. We show how the STC method works using a single sample library. We then apply STC to 295 threespine stickleback (Gasterosteus aculeatus samples from four populations and show that neighboring populations differ significantly in MHC allele pools. We show that STC is a reliable, accurate, efficient, and flexible method for genotyping MHC that will be of use to biologists interested in a variety of downstream applications.

On the Power and Limits of Sequence Similarity Based Clustering of Proteins Into Families

DEFF Research Database (Denmark)

Wiwie, Christian; Röttger, Richard

2017-01-01

Over the last decades, we have observed an ongoing tremendous growth of available sequencing data fueled by the advancements in wet-lab technology. The sequencing information is only the beginning of the actual understanding of how organisms survive and prosper. It is, for instance, equally...... important to also unravel the proteomic repertoire of an organism. A classical computational approach for detecting protein families is a sequence-based similarity calculation coupled with a subsequent cluster analysis. In this work we have intensively analyzed various clustering tools on a large scale. We...... used the data to investigate the behavior of the tools' parameters underlining the diversity of the protein families. Furthermore, we trained regression models for predicting the expected performance of a clustering tool for an unknown data set and aimed to also suggest optimal parameters...

BVRI main-sequence photometry of the globular cluster M4

International Nuclear Information System (INIS)

Alcaino, G.; Liller, W.

1984-01-01

We present BV and RI photographic photometry of 1421 and 189 stars, respectively, in the intermediate metallicity globular cluster M4 (NGC 6121). This investigation includes the first results of RI main-sequence photometry of a globular cluster. The use of longer wavelengths and longer color baselines provides the potential of improved isochrone fittings and underscores the urgent need for calculations of RI synthetic isochrones to be compared with observations. The Pickering-Racine wedge was used with the ESO 3.6 m telescope, the Las Campanas 2.5 m du Pont telescope, and the CTIO 1 m Yale telescope to extend the photoelectric limit from Vroughly-equal16.1 to Vroughly-equal19.1. We have determined the position of the main-sequence turnoff to lie at V = 16.6 +- 0.2 (m.e.) and B-V = 0.80 +- 0.03 (m.e.). A comparison of our BV observations with the CCD data of Richer and Fahlman shows excellent agreement: the two fifucial main sequences agree at all points to within 0.025 mag and, on average, to 0.013 mag. For the cluster we derive a distance modulus (m-M)/sub V/ = 12.52 +- 0.2 and reddening E(B-V) = 0.44 +- 0.03, results which confirm that at a distance of 2 kpc, M4 is the closest globular clusters to the Sun. Using the isochrones of VandenBerg, we deduce an age 13 +- 2 Gyr. As noted in several other investigations, there is a striking deficiency of stars in certain parts of the color-magnitude diagram; in M4 we find a pronounced gap over approx.0.6 mag at the base of the subgiant branch

Genetic signatures of adaptation revealed from transcriptome sequencing of Arctic and red foxes

OpenAIRE

Kumar, Vikas; Kutschera, Verena E.; Nilsson, Maria A.; Janke, Axel

2015-01-01

Background The genus Vulpes (true foxes) comprises numerous species that inhabit a wide range of habitats and climatic conditions, including one species, the Arctic fox (Vulpes lagopus) which is adapted to the arctic region. A close relative to the Arctic fox, the red fox (Vulpes vulpes), occurs in subarctic to subtropical habitats. To study the genetic basis of their adaptations to different environments, transcriptome sequences from two Arctic foxes and one red fox individual were generated...

SPIRITS: SPitzer InfraRed Intensive Transients Survey

Science.gov (United States)

Kasliwal, Mansi; Jencson, Jacob; Lau, Ryan; Masci, Frank; Helou, George; Williams, Robert; Bally, John; Bond, Howard; Whitelock, Patricia; Cody, Ann Marie; Gehrz, Robert; Tinyanont, Samaporn; Smith, Nathan; Surace, Jason; Armus, Lee; Cantiello, Matteo; Langer, Norbert; Levesque, Emily; Mohamed, Shazrene; Ofek, Eran; Parthasarathy, Mudumba; van Dyk, Schuyler; Boyer, Martha; Phillips, Mark; Hsiao, Eric; Morrell, Nidia; Perley, Dan; Gonzalez, Consuelo; Contreras, Carlos; Jones, Olivia; Ressler, Michael; Adams, Scott; Moore, Anna; Cook, David; Fox, Ori; Johansson, Joel; Khan, Rubab; Monson, Andrew; Hankins, Matthew; Goldman, Steven; Jacob, Jencson

2018-05-01

Spitzer is pioneering a systematic exploration of the dynamic infrared sky. Our SPitzer InfraRed Intensive Transients Survey (SPIRITS) has already discovered 78 explosive transients and 2457 eruptive variables. Of these 78 infrared transients, 60 are so red that they are devoid of optical counterparts and we call them SPRITEs (eSPecially Red Intermediate-luminosity Transient Events). The nature of SPRITEs is unknown and progress on deciphering the explosion physics depends on mid-IR spectroscopy. Multiple physical origins have been proposed including stellar merger, birth of a massive binary, electron capture supernova and stellar black hole formation. Hence, we propose a modest continuation of SPIRITS, focusing on discovering and monitoring SPRITEs, in preparation for follow-up with the James Webb Space Telescope (JWST). As the SPRITEs evolve and cool, the bulk of the emission shifts to longer wavelengths. MIRI aboard JWST will be the only available platform in the near future capable of characterizing SPRITEs out to 28 um. Specifically, the low resolution spectrometer would determine dust mass, grain chemistry, ice abundance and energetics to disentangle the proposed origins. The re-focused SPIRITS program consists of continued Spitzer monitoring of those 106 luminous galaxies that are known SPRITE hosts or are most likely to host new SPRITEs. Scaling from the SPIRITS discovery rate, we estimate finding 10 new SPRITEs and 2-3 new supernovae in Cycle 14. The SPIRITS team remains committed to extensive ground-based follow-up. The Spitzer observations proposed here are essential for determining the final fates of active SPRITEs as well as bridging the time lag between the current SPIRITS survey and JWST launch.

Performance of small cluster surveys and the clustered LQAS design to estimate local-level vaccination coverage in Mali

Directory of Open Access Journals (Sweden)

Minetti Andrea

2012-10-01

Full Text Available Abstract Background Estimation of vaccination coverage at the local level is essential to identify communities that may require additional support. Cluster surveys can be used in resource-poor settings, when population figures are inaccurate. To be feasible, cluster samples need to be small, without losing robustness of results. The clustered LQAS (CLQAS approach has been proposed as an alternative, as smaller sample sizes are required. Methods We explored (i the efficiency of cluster surveys of decreasing sample size through bootstrapping analysis and (ii the performance of CLQAS under three alternative sampling plans to classify local VC, using data from a survey carried out in Mali after mass vaccination against meningococcal meningitis group A. Results VC estimates provided by a 10 × 15 cluster survey design were reasonably robust. We used them to classify health areas in three categories and guide mop-up activities: i health areas not requiring supplemental activities; ii health areas requiring additional vaccination; iii health areas requiring further evaluation. As sample size decreased (from 10 × 15 to 10 × 3, standard error of VC and ICC estimates were increasingly unstable. Results of CLQAS simulations were not accurate for most health areas, with an overall risk of misclassification greater than 0.25 in one health area out of three. It was greater than 0.50 in one health area out of two under two of the three sampling plans. Conclusions Small sample cluster surveys (10 × 15 are acceptably robust for classification of VC at local level. We do not recommend the CLQAS method as currently formulated for evaluating vaccination programmes.

New Galactic star clusters discovered in the VVV survey

Science.gov (United States)

Borissova, J.; Bonatto, C.; Kurtev, R.; Clarke, J. R. A.; Peñaloza, F.; Sale, S. E.; Minniti, D.; Alonso-García, J.; Artigau, E.; Barbá, R.; Bica, E.; Baume, G. L.; Catelan, M.; Chenè, A. N.; Dias, B.; Folkes, S. L.; Froebrich, D.; Geisler, D.; de Grijs, R.; Hanson, M. M.; Hempel, M.; Ivanov, V. D.; Kumar, M. S. N.; Lucas, P.; Mauro, F.; Moni Bidin, C.; Rejkuba, M.; Saito, R. K.; Tamura, M.; Toledo, I.

2011-08-01

Context. VISTA Variables in the Vía Láctea (VVV) is one of the six ESO Public Surveys operating on the new 4-m Visible and Infrared Survey Telescope for Astronomy (VISTA). VVV is scanning the Milky Way bulge and an adjacent section of the disk, where star formation activity is high. One of the principal goals of the VVV Survey is to find new star clusters of differentages. Aims: In order to trace the early epochs of star cluster formation we concentrated our search in the directions to those of known star formation regions, masers, radio, and infrared sources. Methods: The disk area covered by VVV was visually inspected using the pipeline processed and calibrated KS-band tile images for stellar overdensities. Subsequently, we examined the composite JHKS and ZJKS color images of each candidate. PSF photometry of 15 × 15 arcmin fields centered on the candidates was then performed on the Cambridge Astronomy Survey Unit reduced images. After statistical field-star decontamination, color-magnitude and color-color diagrams were constructed and analyzed. Results: We report the discovery of 96 new infrared open clusters and stellar groups. Most of the new cluster candidates are faint and compact (with small angular sizes), highly reddened, and younger than 5 Myr. For relatively well populated cluster candidates we derived their fundamental parameters such as reddening, distance, and age by fitting the solar-metallicity Padova isochrones to the color-magnitude diagrams. Based on observations gathered with VIRCAM, VISTA of the ESO as part of observing programs 172.B-2002Appendix A is available in electronic form at http://www.aanda.orgTable 1 is only available at the CDS via anonymous ftp to cdsarc.u-strasbg.fr (130.79.128.5) or via http://cdsarc.u-strasbg.fr/viz-bin/qcat?J/A+A/532/A131

The Effects of Halo Assembly Bias on Self-Calibration in Galaxy Cluster Surveys

Energy Technology Data Exchange (ETDEWEB)

Wu, Hao-Yi; Rozo, Eduardo; Wechsler, Risa H.

2008-08-07

Self-calibration techniques for analyzing galaxy cluster counts utilize the abundance and the clustering amplitude of dark matter halos. These properties simultaneously constrain cosmological parameters and the cluster observable-mass relation. It was recently discovered that the clustering amplitude of halos depends not only on the halo mass, but also on various secondary variables, such as the halo formation time and the concentration; these dependences are collectively termed 'assembly bias'. Applying modified Fisher matrix formalism, we explore whether these secondary variables have a significant impact on the study of dark energy properties using the self-calibration technique in current (SDSS) and the near future (DES, SPT, and LSST) cluster surveys. The impact of the secondary dependence is determined by (1) the scatter in the observable-mass relation and (2) the correlation between observable and secondary variables. We find that for optical surveys, the secondary dependence does not significantly influence an SDSS-like survey; however, it may affect a DES-like survey (given the high scatter currently expected from optical clusters) and an LSST-like survey (even for low scatter values and low correlations). For an SZ survey such as SPT, the impact of secondary dependence is insignificant if the scatter is 20% or lower but can be enhanced by the potential high scatter values introduced by a highly-correlated background. Accurate modeling of the assembly bias is necessary for cluster self-calibration in the era of precision cosmology.

Not-so-simple stellar populations in the intermediate-age Large Magellanic Cloud star clusters NGC 1831 and NGC 1868

Energy Technology Data Exchange (ETDEWEB)

Li, Chengyuan; De Grijs, Richard [Kavli Institute for Astronomy and Astrophysics and Department of Astronomy, Peking University, Yi He Yuan Lu 5, Hai Dian District, Beijing 100871 (China); Deng, Licai, E-mail: joshuali@pku.edu.cn, E-mail: grijs@pku.edu.cn [Key Laboratory for Optical Astronomy, National Astronomical Observatories, Chinese Academy of Sciences, 20A Datun Road, Chaoyang District, Beijing 100012 (China)

2014-04-01

Using a combination of high-resolution Hubble Space Telescope/Wide-Field and Planetary Camera-2 observations, we explore the physical properties of the stellar populations in two intermediate-age star clusters, NGC 1831 and NGC 1868, in the Large Magellanic Cloud based on their color-magnitude diagrams. We show that both clusters exhibit extended main-sequence turn offs. To explain the observations, we consider variations in helium abundance, binarity, age dispersions, and the fast rotation of the clusters' member stars. The observed narrow main sequence excludes significant variations in helium abundance in both clusters. We first establish the clusters' main-sequence binary fractions using the bulk of the clusters' main-sequence stellar populations ≳ 1 mag below their turn-offs. The extent of the turn-off regions in color-magnitude space, corrected for the effects of binarity, implies that age spreads of order 300 Myr may be inferred for both clusters if the stellar distributions in color-magnitude space were entirely due to the presence of multiple populations characterized by an age range. Invoking rapid rotation of the population of cluster members characterized by a single age also allows us to match the observed data in detail. However, when taking into account the extent of the red clump in color-magnitude space, we encounter an apparent conflict for NGC 1831 between the age dispersion derived from that based on the extent of the main-sequence turn off and that implied by the compact red clump. We therefore conclude that, for this cluster, variations in stellar rotation rate are preferred over an age dispersion. For NGC 1868, both models perform equally well.

Curve-of-growth analysis of a red giant in the globular cluster M13

International Nuclear Information System (INIS)

Griffin, R.

1979-01-01

A coude spectrogram of a red giant (L973) in the globular cluster M13 is analysed, with respect to α Boo, by the differential curve-of-growth technique. The overall metal abundance is found to be approximately one-tenth of that of α Boo, or one-fortieth that of the Sun. (author)

Distant Galaxy Clusters Hosting Extreme Central Galaxies

Science.gov (United States)

McDonald, Michael

2014-09-01

The recently-discovered Phoenix cluster harbors the most star-forming central cluster galaxy of any cluster in the known Universe, by nearly a factor of 10. This extreme system appears to be fulfilling early cooling flow predictions, although the lack of similar systems makes any interpretation difficult. In an attempt to find other "Phoenix-like" clusters, we have cross-correlated archival all-sky surveys (in which Phoenix was detected) and isolated 4 similarly-extreme systems which are also coincident in position and redshift with an overdensity of red galaxies. We propose here to obtain Chandra observations of these extreme, Phoenix-like systems, in order to confirm them as relaxed, rapidly-cooling galaxy clusters.

A picorna-like virus from the red imported fire ant, Solenopsis invicta: initial discovery, genome sequence, and characterization

International Nuclear Information System (INIS)

Valles, Steven M.; Strong, Charles A.; Dang, Phat M.; Hunter, Wayne B.; Pereira, Roberto M.; Oi, David H.; Shapiro, Alexandra M.; Williams, David F.

2004-01-01

We report the first discovery and genome sequence of a virus infecting the red imported fire ant, Solenopsis invicta. The 8026 nucleotide, polyadenylated, RNA genome encoded two large open reading frames (ORF1 and ORF2), flanked and separated by 27, 223, and 171 nucleotide untranslated regions, respectively. The predicted amino acid sequence of the 5' proximal ORF1 (nucleotides 28 to 4218) exhibited significant identity and possessed consensus sequences characteristic of the helicase, cysteine protease, and RNA-dependent RNA polymerase sequence motifs from picornaviruses, picorna-like viruses, comoviruses, caliciviruses, and sequiviruses. The predicted amino acid sequence of the 3' proximal ORF2 (nucleotides 4390-7803) showed similarity to structural proteins in picorna-like viruses, especially the acute bee paralysis virus. Electron microscopic examination of negatively stained samples from virus-infected fire ants revealed isometric particles with a diameter of 31 nm, consistent with Picornaviridae. A survey for the fire ant virus from areas around Florida revealed a pattern of fairly widespread distribution. Among 168 nests surveyed, 22.9% were infected. The virus was found to infect all fire ant caste members and developmental stages, including eggs, early (1st-2nd) and late (3rd-4th) instars, worker pupae, workers, sexual pupae, alates ( male and female ), and queens. The virus, tentatively named S. invicta virus (SINV-1), appears to belong to the picorna-like viruses. We did not observe any perceptible symptoms among infected nests in the field. However, in every case where an SINV-1-infected colony was excavated from the field with an inseminated queen and held in the laboratory, all of the brood in these colonies died within 3 months

GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data.

Science.gov (United States)

Schulz, Tizian; Stoye, Jens; Doerr, Daniel

2018-05-08

Hi-C sequencing offers novel, cost-effective means to study the spatial conformation of chromosomes. We use data obtained from Hi-C experiments to provide new evidence for the existence of spatial gene clusters. These are sets of genes with associated functionality that exhibit close proximity to each other in the spatial conformation of chromosomes across several related species. We present the first gene cluster model capable of handling spatial data. Our model generalizes a popular computational model for gene cluster prediction, called δ-teams, from sequences to graphs. Following previous lines of research, we subsequently extend our model to allow for several vertices being associated with the same label. The model, called δ-teams with families, is particular suitable for our application as it enables handling of gene duplicates. We develop algorithmic solutions for both models. We implemented the algorithm for discovering δ-teams with families and integrated it into a fully automated workflow for discovering gene clusters in Hi-C data, called GraphTeams. We applied it to human and mouse data to find intra- and interchromosomal gene cluster candidates. The results include intrachromosomal clusters that seem to exhibit a closer proximity in space than on their chromosomal DNA sequence. We further discovered interchromosomal gene clusters that contain genes from different chromosomes within the human genome, but are located on a single chromosome in mouse. By identifying δ-teams with families, we provide a flexible model to discover gene cluster candidates in Hi-C data. Our analysis of Hi-C data from human and mouse reveals several known gene clusters (thus validating our approach), but also few sparsely studied or possibly unknown gene cluster candidates that could be the source of further experimental investigations.

Sequence spaces M ( ϕ $M(\\phi$ and N ( ϕ $N(\\phi$ with application in clustering

Directory of Open Access Journals (Sweden)

Mohd Shoaib Khan

2017-03-01

Full Text Available Abstract Distance measures play a central role in evolving the clustering technique. Due to the rich mathematical background and natural implementation of l p $l_{p}$ distance measures, researchers were motivated to use them in almost every clustering process. Beside l p $l_{p}$ distance measures, there exist several distance measures. Sargent introduced a special type of distance measures m ( ϕ $m(\\phi$ and n ( ϕ $n(\\phi$ which is closely related to l p $l_{p}$ . In this paper, we generalized the Sargent sequence spaces through introduction of M ( ϕ $M(\\phi$ and N ( ϕ $N(\\phi$ sequence spaces. Moreover, it is shown that both spaces are BK-spaces, and one is a dual of another. Further, we have clustered the two-moon dataset by using an induced M ( ϕ $M(\\phi$ -distance measure (induced by the Sargent sequence space M ( ϕ $M(\\phi$ in the k-means clustering algorithm. The clustering result established the efficacy of replacing the Euclidean distance measure by the M ( ϕ $M(\\phi$ -distance measure in the k-means algorithm.

The globular cluster ω Centauri and its RR Lyrae variables

International Nuclear Information System (INIS)

Dickens, R.J.

1989-07-01

The significance of some of the unusual characteristics of the globular cluster ωCentauri in various fundamental problems is explored. Interest is centred on the properties of the cluster RR Lyraes, and what they can contribute to studies of early cluster chemical enrichment, stellar pulsation, the distance scale, stellar evolution, stellar ages and the Oosterhoff period-shift problem. This article, which is intended to highlight problems and progress rather than give a comprehensive review, includes new results based on photometry of the RR Lyraes, red giants, subgiants, horizontal-branch and main sequence stars in the cluster. (author)

Survey of red stars in the direction of the large Magellanic cloud

International Nuclear Information System (INIS)

Bappu, M.K.V.; Parthasarathy, M.; Scaria, K.K.

1977-01-01

A survey of red stars in the direction of the Large Magellanic Cloud using the technique of ultra-low dispersion spectroscopy is presented. A listing of the red stars in the 30 Doradus region is given for which finding charts and coordinates on the Hodge-Wright Atlas charts are provided. (author)

The C4 clustering algorithm: Clusters of galaxies in the Sloan Digital Sky Survey

Energy Technology Data Exchange (ETDEWEB)

Miller, Christopher J.; Nichol, Robert; Reichart, Dan; Wechsler, Risa H.; Evrard, August; Annis, James; McKay, Timothy; Bahcall, Neta; Bernardi, Mariangela; Boehringer,; Connolly, Andrew; Goto, Tomo; Kniazev, Alexie; Lamb, Donald; Postman, Marc; Schneider, Donald; Sheth, Ravi; Voges, Wolfgang; /Cerro-Tololo InterAmerican Obs. /Portsmouth U.,

2005-03-01

We present the ''C4 Cluster Catalog'', a new sample of 748 clusters of galaxies identified in the spectroscopic sample of the Second Data Release (DR2) of the Sloan Digital Sky Survey (SDSS). The C4 cluster-finding algorithm identifies clusters as overdensities in a seven-dimensional position and color space, thus minimizing projection effects that have plagued previous optical cluster selection. The present C4 catalog covers {approx}2600 square degrees of sky and ranges in redshift from z = 0.02 to z = 0.17. The mean cluster membership is 36 galaxies (with redshifts) brighter than r = 17.7, but the catalog includes a range of systems, from groups containing 10 members to massive clusters with over 200 cluster members with redshifts. The catalog provides a large number of measured cluster properties including sky location, mean redshift, galaxy membership, summed r-band optical luminosity (L{sub r}), velocity dispersion, as well as quantitative measures of substructure and the surrounding large-scale environment. We use new, multi-color mock SDSS galaxy catalogs, empirically constructed from the {Lambda}CDM Hubble Volume (HV) Sky Survey output, to investigate the sensitivity of the C4 catalog to the various algorithm parameters (detection threshold, choice of passbands and search aperture), as well as to quantify the purity and completeness of the C4 cluster catalog. These mock catalogs indicate that the C4 catalog is {approx_equal}90% complete and 95% pure above M{sub 200} = 1 x 10{sup 14} h{sup -1}M{sub {circle_dot}} and within 0.03 {le} z {le} 0.12. Using the SDSS DR2 data, we show that the C4 algorithm finds 98% of X-ray identified clusters and 90% of Abell clusters within 0.03 {le} z {le} 0.12. Using the mock galaxy catalogs and the full HV dark matter simulations, we show that the L{sub r} of a cluster is a more robust estimator of the halo mass (M{sub 200}) than the galaxy line-of-sight velocity dispersion or the richness of the cluster

Facilitating genome navigation : survey sequencing and dense radiation-hybrid gene mapping

NARCIS (Netherlands)

Hitte, C; Madeoy, J; Kirkness, EF; Priat, C; Lorentzen, TD; Senger, F; Thomas, D; Derrien, T; Ramirez, C; Scott, C; Evanno, G; Pullar, B; Cadieu, E; Oza, [No Value; Lourgant, K; Jaffe, DB; Tacher, S; Dreano, S; Berkova, N; Andre, C; Deloukas, P; Fraser, C; Lindblad-Toh, K; Ostrander, EA; Galibert, F

Accurate and comprehensive sequence coverage for large genomes has been restricted to only a few species of specific interest. Lower sequence coverage (survey sequencing) of related species can yield a wealth of information about gene content and putative regulatory elements. But survey sequences

Detection and genetic characterization of tick-borne encephalitis virus (TBEV) derived from ticks removed from red foxes (Vulpes vulpes) and isolated from spleen samples of red deer (Cervus elaphus) in Croatia.

Science.gov (United States)

Jemeršić, Lorena; Dežđek, Danko; Brnić, Dragan; Prpić, Jelena; Janicki, Zdravko; Keros, Tomislav; Roić, Besi; Slavica, Alen; Terzić, Svjetlana; Konjević, Dean; Beck, Relja

2014-02-01

Tick-borne encephalitis (TBE) is a growing public health concern in central and northern European countries. Even though TBE is a notifiable disease in Croatia, there is a significant lack of information in regard to vector tick identification, distribution as well as TBE virus prevalence in ticks or animals. The aim of our study was to identify and to investigate the viral prevalence of TBE virus in ticks removed from red fox (Vulpes vulpes) carcasses hunted in endemic areas in northern Croatia and to gain a better insight in the role of wild ungulates, especially red deer (Cervus elaphus) in the maintenance of the TBE virus in the natural cycle. We identified 5 tick species (Ixodes ricinus, Ixodes hexagonus, Haemaphysalis punctata, Dermacentor reticulatus, Rhipicephalus sanguineus) removed from 40 red foxes. However, TBE virus was isolated only from adult I. ricinus and I. hexagonus ticks showing a viral prevalence (1.6%) similar to or higher than reported in endemic areas of other European countries. Furthermore, 2 positive spleen samples from 182 red deer (1.1%) were found. Croatian TBE virus isolates were genetically analyzed, and they were shown to be closely related, all belonging to the European TBE virus subgroup. However, on the basis of nucleotide and amino acid sequence analysis, 2 clusters were identified. Our results show that further investigation is needed to understand the clustering of isolates and to identify the most common TBE virus reservoir hosts in Croatia. Sentinel surveys based on wild animal species would give a better insight in defining TBE virus-endemic and possible risk areas in Croatia. Copyright © 2013. Published by Elsevier GmbH.

THE STAR FORMATION HISTORIES OF RED-SEQUENCE GALAXIES, MASS-TO-LIGHT RATIOS AND THE FUNDAMENTAL PLANE

International Nuclear Information System (INIS)

Allanson, Steven P.; Hudson, Michael J.; Smith, Russell J.; Lucey, John R.

2009-01-01

This paper addresses the challenge of understanding the typical star formation histories of red-sequence galaxies, using linestrength indices and mass-to-light ratios as complementary constraints on their stellar age distribution. We first construct simple parametric models of the star formation history that bracket a range of scenarios, and fit these models to the linestrength indices of low-redshift cluster red-sequence galaxies. For giant galaxies, we confirm the downsizing trend, i.e., the stellar populations are younger, on average, for lower σ galaxies. We find, however, that this trend flattens or reverses at σ ∼ -1 . We then compare predicted stellar mass-to-light ratios with dynamical mass-to-light ratios derived from the fundamental plane (FP), or by the SAURON group. For galaxies with σ ∼ 70 km s -1 , models with a late 'frosting' of young stars and models with exponential star formation histories have stellar mass-to-light ratios that are larger than observed dynamical mass-to-light ratios by factors of 1.7 and 1.4, respectively, and so are rejected. The single stellar population (SSP) model is consistent with the FP, and requires a modest amount of dark matter (between 20% and 30%) to account for the difference between stellar and dynamical mass-to-light ratios. A model in which star formation was 'quenched' at intermediate ages is also consistent with the observations, although in this case less dark matter is required for low mass galaxies. We also find that the contribution of stellar populations to the 'tilt' of the fundamental plane is highly dependent on the assumed star formation history: for the SSP model, the tilt of the FP is driven primarily by stellar-population effects. For a quenched model, two-thirds of the tilt is due to stellar populations and only one-third is due to dark matter or non-homology.

The double main sequence of Omega Centauri

Science.gov (United States)

Bedin, L. R.; Piotto, G.; Anderson, J.; King, I. R.; Cassisi, S.; Momany, Y.

Recent, high precision photometry of Omega Centauri, the biggest Galactic globular cluster, has been obtained with Hubble Space Telescope (HST). The color magnitude diagram reveals an unexpected bifurcation of colors in the main sequence (MS). The newly found double MS, the multiple turnoffs and subgiant branches, and other sequences discovered in the past along the red giant branch of this cluster add up to a fascinating but frustrating puzzle. Among the possible explanations for the blue main sequence an anomalous overabundance of helium is suggested. The hypothesis will be tested with a set of FLAMES@VLT data we have recently obtained (ESO DDT program), and with forthcoming ACS@HST images. Based on observations with the NASA/ESA Hubble Space Telescope, obtained at the Space Telescope Science Institute, which is operated by AURA, Inc., under NASA contract NAS 5-26555.

Photoelectric UBVRI sequences in the Magellanic Cloud clusters Lindsay 1, NGC 339, NGC 361, and NGC 1466

International Nuclear Information System (INIS)

Alcaino, G.; Alvarado, F.; Wenderoth, E.; Liller, W.

1990-01-01

UBVRI sequences in three Small Magellanic Cloud (SMC) clusters Lindsay 1, NGC 339, NGC 361, and in NGC 1466, which lies between the two Magellanic Clouds, are presented. These sequences are appropriate for charge-coupled device (CCD) coverage. Only BV standards have been published in NGC 339 and UBV in NGC 1466; no sequences exist for the two other clusters. 15 refs

Diversity of picoeukaryotes at an oligotrophic site off the Northeastern Red Sea Coast.

Science.gov (United States)

Acosta, Francisco; Ngugi, David Kamanda; Stingl, Ulrich

2013-08-20

Picoeukaryotes are protists ≤ 3 μm composed of a wide diversity of taxonomic groups. They are an important constituent of the ocean's microbiota and perform essential ecological roles in marine nutrient and carbon cycles. Despite their importance, the true extent of their diversity has only recently been uncovered by molecular surveys that resulted in the discovery of a substantial number of previously unknown groups. No study on picoeukaryote diversity has been conducted so far in the main Red Sea basin-a unique marine environment characterized by oligotrophic conditions, high levels of irradiance, high salinity and increased water temperature. We sampled surface waters off the coast of the northeastern Red Sea and analyzed the picoeukaryotic diversity using Sanger-based clone libraries of the 18S rRNA gene in order to produce high quality, nearly full-length sequences. The community captured by our approach was dominated by three main phyla, the alveolates, stramenopiles and chlorophytes; members of Radiolaria, Cercozoa and Haptophyta were also found, albeit in low abundances. Photosynthetic organisms were especially diverse and abundant in the sample, confirming the importance of picophytoplankton for primary production in the basin as well as indicating the existence of numerous ecological micro-niches for this trophic level in the upper euphotic zone. Heterotrophic organisms were mostly composed of the presumably parasitic Marine Alveolates (MALV) and the presumably bacterivorous Marine Stramenopiles (MAST) groups. A small number of sequences that did not cluster closely with known clades were also found, especially in the MALV-II group, some of which could potentially belong to novel clades. This study provides the first snapshot of the picoeukaryotic diversity present in surface waters of the Red Sea, hence setting the stage for large-scale surveying and characterization of the eukaryotic diversity in the entire basin. Our results indicate that the

Kepler red-clump stars in the field and in open clusters

DEFF Research Database (Denmark)

Bossini, D.; Miglio, A.; Salaris, M.

2017-01-01

Convective mixing in helium-core-burning (HeCB) stars is one of the outstanding issues in stellar modelling. The precise asteroseismic measurements of gravity-mode period spacing (Delta Pi(1)) have opened the door to detailed studies of the near-core structure of such stars, which had not been...... possible before. Here, we provide stringent tests of various core-mixing scenarios against the largely unbiased population of red-clump stars belonging to the old-open clusters monitored by Kepler, and by coupling the updated precise inference on Delta Pi(1) in thousands of field stars with spectroscopic...... constraints. We find that models with moderate overshooting successfully reproduce the range observed of Delta Pi(1) in clusters. In particular, we show that there is no evidence for the need to extend the size of the adiabatically stratified core, at least at the beginning of the HeCB phase. This conclusion...

Draft Genome Sequence of Lactobacillus plantarum XJ25 Isolated from Chinese Red Wine.

Science.gov (United States)

Zhao, Meijing; Liu, Shuwen; He, Ling; Tian, Yu

2016-11-17

Here, we present the draft genome sequence of Lactobacillus plantarum XJ25, isolated from Chinese red wine that had undergone spontaneous malolactic fermentation, which consists of 25 contigs and is 3,218,018 bp long. Copyright © 2016 Zhao et al.

Photoelectric UBVRI sequences in the Galactic globular clusters NGC 6752 and NGC 6864

International Nuclear Information System (INIS)

Alvarado, F.; Wenderoth, E.; Alcaino, G.; Liller, W.

1990-01-01

UBVRI photoelectric sequences for the Galactic globular clusters NGC 6752 and NGC 6864 are presented. Both of them include fields suitable for CCD exposures. From five UBV sequences in NGC 6572, only five stars are in common with the previous works. 15 refs

Choosing a Cluster Sampling Design for Lot Quality Assurance Sampling Surveys.

Directory of Open Access Journals (Sweden)

Lauren Hund

Full Text Available Lot quality assurance sampling (LQAS surveys are commonly used for monitoring and evaluation in resource-limited settings. Recently several methods have been proposed to combine LQAS with cluster sampling for more timely and cost-effective data collection. For some of these methods, the standard binomial model can be used for constructing decision rules as the clustering can be ignored. For other designs, considered here, clustering is accommodated in the design phase. In this paper, we compare these latter cluster LQAS methodologies and provide recommendations for choosing a cluster LQAS design. We compare technical differences in the three methods and determine situations in which the choice of method results in a substantively different design. We consider two different aspects of the methods: the distributional assumptions and the clustering parameterization. Further, we provide software tools for implementing each method and clarify misconceptions about these designs in the literature. We illustrate the differences in these methods using vaccination and nutrition cluster LQAS surveys as example designs. The cluster methods are not sensitive to the distributional assumptions but can result in substantially different designs (sample sizes depending on the clustering parameterization. However, none of the clustering parameterizations used in the existing methods appears to be consistent with the observed data, and, consequently, choice between the cluster LQAS methods is not straightforward. Further research should attempt to characterize clustering patterns in specific applications and provide suggestions for best-practice cluster LQAS designs on a setting-specific basis.

Choosing a Cluster Sampling Design for Lot Quality Assurance Sampling Surveys.

Science.gov (United States)

Hund, Lauren; Bedrick, Edward J; Pagano, Marcello

2015-01-01

Lot quality assurance sampling (LQAS) surveys are commonly used for monitoring and evaluation in resource-limited settings. Recently several methods have been proposed to combine LQAS with cluster sampling for more timely and cost-effective data collection. For some of these methods, the standard binomial model can be used for constructing decision rules as the clustering can be ignored. For other designs, considered here, clustering is accommodated in the design phase. In this paper, we compare these latter cluster LQAS methodologies and provide recommendations for choosing a cluster LQAS design. We compare technical differences in the three methods and determine situations in which the choice of method results in a substantively different design. We consider two different aspects of the methods: the distributional assumptions and the clustering parameterization. Further, we provide software tools for implementing each method and clarify misconceptions about these designs in the literature. We illustrate the differences in these methods using vaccination and nutrition cluster LQAS surveys as example designs. The cluster methods are not sensitive to the distributional assumptions but can result in substantially different designs (sample sizes) depending on the clustering parameterization. However, none of the clustering parameterizations used in the existing methods appears to be consistent with the observed data, and, consequently, choice between the cluster LQAS methods is not straightforward. Further research should attempt to characterize clustering patterns in specific applications and provide suggestions for best-practice cluster LQAS designs on a setting-specific basis.

THE EXTENDED MAIN-SEQUENCE TURNOFF CLUSTERS OF THE LARGE MAGELLANIC CLOUD-MISSING LINKS IN GLOBULAR CLUSTER EVOLUTION

International Nuclear Information System (INIS)

Keller, Stefan C.; Mackey, A. Dougal; Da Costa, Gary S.

2011-01-01

Recent observations of intermediate-age (1-3 Gyr) massive star clusters in the Large Magellanic Cloud have revealed that the majority possess bifurcated or extended main-sequence turnoff (EMSTO) morphologies. This effect can be understood to arise from subsequent star formation among the stellar population with age differences between constituent stars amounting to 50-300 Myr. Age spreads of this order are similarly invoked to explain the light-element abundance variations witnessed in ancient globular clusters (GCs). In this paper, we explore the proposition that the clusters exhibiting the EMSTO phenomenon are a general phase in the evolution of massive clusters, one that naturally leads to the particular chemical properties of the ancient GC population. We show that the isolation of EMSTO clusters to intermediate ages is the consequence of observational selection effects. In our proposed scenario, the EMSTO phenomenon is identical to that which establishes the light-element abundance variations that are ubiquitous in the ancient GC population. Our scenario makes a strong prediction: EMSTO clusters will exhibit abundance variations in the light-elements characteristic of the ancient GC population.

Systematic main sequence photometry of globular cluster stars for age determination

International Nuclear Information System (INIS)

Alcaino, G.; Liller, W.

1984-01-01

The individual photometric study of the coeval stars in globular clusters presents one of the best observational tests of the stellar evolution theory. Our own globular cluster system provides fundamental clues to the dynamical and chemical evolutionary history of the galaxy, and the study of their ages give a lower limit to the age of the galaxy as well as to that of the universe. The authors have undertaken a systematic research program, and discuss the ages deduced by fitting main sequence photometry to theoretical isochrones of six galactic globular clusters: M4, M22, M30, NGC 288, NGC 3201 and NGC 6397. (Auth.)

Galaxy clusters in the SDSS Stripe 82 based on photometric redshifts

International Nuclear Information System (INIS)

Durret, F.; Adami, C.; Bertin, E.; Hao, J.; Márquez, I.

2015-01-01

Based on a recent photometric redshift galaxy catalogue, we have searched for galaxy clusters in the Stripe ~82 region of the Sloan Digital Sky Survey by applying the Adami & MAzure Cluster FInder (AMACFI). Extensive tests were made to fine-tune the AMACFI parameters and make the cluster detection as reliable as possible. The same method was applied to the Millennium simulation to estimate our detection efficiency and the approximate masses of the detected clusters. Considering all the cluster galaxies (i.e. within a 1 Mpc radius of the cluster to which they belong and with a photoz differing by less than 0.05 from that of the cluster), we stacked clusters in various redshift bins to derive colour-magnitude diagrams and galaxy luminosity functions (GLFs). For each galaxy with absolute magnitude brighter than -19.0 in the r band, we computed the disk and spheroid components by applying SExtractor, and by stacking clusters we determined how the disk-to-spheroid flux ratio varies with cluster redshift and mass. We also detected 3663 clusters in the redshift range 0.15< z<0.70, with estimated mean masses between 10"1"3 and a few 10"1"4 solar masses. Furthermore, by stacking the cluster galaxies in various redshift bins, we find a clear red sequence in the (g'-r') versus r' colour-magnitude diagrams, and the GLFs are typical of clusters, though with a possible contamination from field galaxies. The morphological analysis of the cluster galaxies shows that the fraction of late-type to early-type galaxies shows an increase with redshift (particularly in high mass clusters) and a decrease with detection level, i.e. cluster mass. From the properties of the cluster galaxies, the majority of the candidate clusters detected here seem to be real clusters with typical cluster properties.

Comparing Dark Energy Survey and HST –CLASH observations of the galaxy cluster RXC J2248.7-4431: implications for stellar mass versus dark matter

Energy Technology Data Exchange (ETDEWEB)

Palmese, A.; Lahav, O.; Banerji, M.; Gruen, D.; Jouvel, S.; Melchior, P.; Aleksić, J.; Annis, J.; Diehl, H. T.; Hartley, W. G.; Jeltema, T.; Romer, A. K.; Rozo, E.; Rykoff, E. S.; Seitz, S.; Suchyta, E.; Zhang, Y.; Abbott, T. M. C.; Abdalla, F. B.; Allam, S.; Benoit-Lévy, A.; Bertin, E.; Brooks, D.; Buckley-Geer, E.; Burke, D. L.; Capozzi, D.; Carnero Rosell, A.; Carrasco Kind, M.; Carretero, J.; Crocce, M.; Cunha, C. E.; D' Andrea, C. B.; da Costa, L. N.; Desai, S.; Dietrich, J. P.; Doel, P.; Estrada, J.; Evrard, A. E.; Flaugher, B.; Frieman, J.; Gerdes, D. W.; Goldstein, D. A.; Gruendl, R. A.; Gutierrez, G.; Honscheid, K.; James, D. J.; Kuehn, K.; Kuropatkin, N.; Li, T. S.; Lima, M.; Maia, M. A. G.; Marshall, J. L.; Miller, C. J.; Miquel, R.; Nord, B.; Ogando, R.; Plazas, A. A.; Roodman, A.; Sanchez, E.; Scarpine, V.; Sevilla-Noarbe, I.; Smith, R. C.; Soares-Santos, M.; Sobreira, F.; Swanson, M. E. C.; Tarle, G.; Thomas, D.; Tucker, D.; Vikram, V.

2016-08-20

We derive the stellar mass fraction in the galaxy cluster RXC J2248.7-4431 observed with the Dark Energy Survey (DES) during the Science Verification period. We compare the stellar mass results from DES (five filters) with those from the Hubble Space Telescope Cluster Lensing And Supernova Survey (CLASH; 17 filters). When the cluster spectroscopic redshift is assumed, we show that stellar masses from DES can be estimated within 25 per cent of CLASH values. We compute the stellar mass contribution coming from red and blue galaxies, and study the relation between stellar mass and the underlying dark matter using weak lensing studies with DES and CLASH. An analysis of the radial profiles of the DES total and stellar mass yields a stellar-to-total fraction of f(star) = (6.8 +/- 1.7) x 10(-3) within a radius of r(200c) similar or equal to 2 Mpc. Our analysis also includes a comparison of photometric redshifts and star/galaxy separation efficiency for both data sets. We conclude that space-based small field imaging can be used to calibrate the galaxy properties in DES for the much wider field of view. The technique developed to derive the stellar mass fraction in galaxy clusters can be applied to the similar to 100 000 clusters that will be observed within this survey and yield important information about galaxy evolution.

Sequencing of red wine proanthocyanidins by UHPLC-ESI-Q-ToF

Directory of Open Access Journals (Sweden)

Adéline Delcambre

2015-04-01

Full Text Available Dimers of proanthocyanidins with four monomeric units and two distinct linkages are detected and tentatively identified for the first time in Merlot red wine variety without sample preparation. These compounds were characterized by electrospray ionization quadrupole time of flight mass spectrometry in negative mode. Fragments ions derived from retro-Diels Alder, heterocyclic ring fission and quinone methide were detected in targeted MS/MS mode and then assigned by using well-known theoretical fragmentation pathways. The sequencing of these compounds was correlated with the theoretical numbers of oligomers established by mathematical relationship taking in consideration the four monomeric units, the interflavan bond and the ether bond. Our analytical method allows the identification of twenty B-type dimers and twelve A-type dimers in red wine.

Chemical Abundances of Main-sequence, Turnoff, Subgiant, and Red Giant Stars from APOGEE Spectra. I. Signatures of Diffusion in the Open Cluster M67

Science.gov (United States)

Souto, Diogo; Cunha, Katia; Smith, Verne V.; Allende Prieto, C.; García-Hernández, D. A.; Pinsonneault, Marc; Holzer, Parker; Frinchaboy, Peter; Holtzman, Jon; Johnson, J. A.; Jönsson, Henrik; Majewski, Steven R.; Shetrone, Matthew; Sobeck, Jennifer; Stringfellow, Guy; Teske, Johanna; Zamora, Olga; Zasowski, Gail; Carrera, Ricardo; Stassun, Keivan; Fernandez-Trincado, J. G.; Villanova, Sandro; Minniti, Dante; Santana, Felipe

2018-04-01

Detailed chemical abundance distributions for 14 elements are derived for eight high-probability stellar members of the solar metallicity old open cluster M67 with an age of ∼4 Gyr. The eight stars consist of four pairs, with each pair occupying a distinct phase of stellar evolution: two G dwarfs, two turnoff stars, two G subgiants, and two red clump (RC) K giants. The abundance analysis uses near-IR high-resolution spectra (λ1.5–1.7 μm) from the Apache Point Observatory Galactic Evolution Experiment survey and derives abundances for C, N, O, Na, Mg, Al, Si, K, Ca, Ti, V, Cr, Mn, and Fe. Our derived stellar parameters and metallicity for 2M08510076+1153115 suggest that this star is a solar twin, exhibiting abundance differences relative to the Sun of ≤0.04 dex for all elements. Chemical homogeneity is found within each class of stars (∼0.02 dex), while significant abundance variations (∼0.05–0.20 dex) are found across the different evolutionary phases; the turnoff stars typically have the lowest abundances, while the RCs tend to have the largest. Non-LTE corrections to the LTE-derived abundances are unlikely to explain the differences. A detailed comparison of the derived Fe, Mg, Si, and Ca abundances with recently published surface abundances from stellar models that include chemical diffusion provides a good match between the observed and predicted abundances as a function of stellar mass. Such agreement would indicate the detection of chemical diffusion processes in the stellar members of M67.

Time-clustering behavior of sharp fluctuation sequences in Chinese stock markets

International Nuclear Information System (INIS)

Yuan Ying; Zhuang Xintian; Liu Zhiying; Huang Weiqiang

2012-01-01

Sharp fluctuations (in particular, extreme fluctuations) of asset prices have a great impact on financial markets and risk management. Therefore, investigating the time dynamics of sharp fluctuation is a challenge in the financial fields. Using two different representations of the sharp fluctuations (inter-event times and series of counts), the time clustering behavior in the sharp fluctuation sequences of stock markets in China is studied with several statistical tools, including coefficient of variation, Allan Factor, Fano Factor as well as R/S (rescaled range) analysis. All of the empirical results indicate that the time dynamics of the sharp fluctuation sequences can be considered as a fractal process with a high degree of time-clusterization of the events. It can help us to get a better understanding of the nature and dynamics of sharp fluctuation of stock price in stock markets.

Application of k-means clustering algorithm in grouping the DNA sequences of hepatitis B virus (HBV)

Science.gov (United States)

Bustamam, A.; Tasman, H.; Yuniarti, N.; Frisca, Mursidah, I.

2017-07-01

Based on WHO data, an estimated of 15 millions people worldwide who are infected with hepatitis B (HBsAg+), which is caused by HBV virus, are also infected by hepatitis D, which is caused by HDV virus. Hepatitis D infection can occur simultaneously with hepatitis B (co infection) or after a person is exposed to chronic hepatitis B (super infection). Since HDV cannot live without HBV, HDV infection is closely related to HBV infection, hence it is very realistic that every effort of prevention against hepatitis B can indirectly prevent hepatitis D. This paper presents clustering of HBV DNA sequences by using k-means clustering algorithm and R programming. Clustering processes are started with collecting HBV DNA sequences from GenBank, then performing extraction HBV DNA sequences using n-mers frequency and furthermore the extraction results are collected as a matrix and normalized using the min-max normalization with interval [0, 1] which will later be used as an input data. The number of clusters is two and the initial centroid selected of the cluster is chosen randomly. In each iteration, the distance of every object to each centroid are calculated using the Euclidean distance and the minimum distance is selected to determine the membership in a cluster until two convergent clusters are created. As the result, the HBV viruses in the first cluster is more virulent than the HBV viruses in the second cluster, so the HBV viruses in the first cluster can potentially evolve with HDV viruses that cause hepatitis D.

Cluster based on sequence comparison of homologous proteins of 95 organism species - Gclust Server | LSDB Archive [Life Science Database Archive metadata

Lifescience Database Archive (English)

Full Text Available List Contact us Gclust Server Cluster based on sequence comparison of homologous proteins of 95 organism spe...cies Data detail Data name Cluster based on sequence comparison of homologous proteins of 95 organism specie...istory of This Database Site Policy | Contact Us Cluster based on sequence compariso

The clustering evolution of distant red galaxies in the GOODS-MUSIC sample

Science.gov (United States)

Grazian, A.; Fontana, A.; Moscardini, L.; Salimbeni, S.; Menci, N.; Giallongo, E.; de Santis, C.; Gallozzi, S.; Nonino, M.; Cristiani, S.; Vanzella, E.

2006-07-01

Aims.We study the clustering properties of Distant Red Galaxies (DRGs) to test whether they are the progenitors of local massive galaxies. Methods.We use the GOODS-MUSIC sample, a catalog of ~3000 Ks-selected galaxies based on VLT and HST observation of the GOODS-South field with extended multi-wavelength coverage (from 0.3 to 8~μm) and accurate estimates of the photometric redshifts to select 179 DRGs with J-Ks≥ 1.3 in an area of 135 sq. arcmin.Results.We first show that the J-Ks≥ 1.3 criterion selects a rather heterogeneous sample of galaxies, going from the targeted high-redshift luminous evolved systems, to a significant fraction of lower redshift (1mass, like groups or small galaxy clusters. Low-z DRGs, on the other hand, will likely evolve into slightly less massive field galaxies.

Parallel algorithms for large-scale biological sequence alignment on Xeon-Phi based clusters.

Science.gov (United States)

Lan, Haidong; Chan, Yuandong; Xu, Kai; Schmidt, Bertil; Peng, Shaoliang; Liu, Weiguo

2016-07-19

Computing alignments between two or more sequences are common operations frequently performed in computational molecular biology. The continuing growth of biological sequence databases establishes the need for their efficient parallel implementation on modern accelerators. This paper presents new approaches to high performance biological sequence database scanning with the Smith-Waterman algorithm and the first stage of progressive multiple sequence alignment based on the ClustalW heuristic on a Xeon Phi-based compute cluster. Our approach uses a three-level parallelization scheme to take full advantage of the compute power available on this type of architecture; i.e. cluster-level data parallelism, thread-level coarse-grained parallelism, and vector-level fine-grained parallelism. Furthermore, we re-organize the sequence datasets and use Xeon Phi shuffle operations to improve I/O efficiency. Evaluations show that our method achieves a peak overall performance up to 220 GCUPS for scanning real protein sequence databanks on a single node consisting of two Intel E5-2620 CPUs and two Intel Xeon Phi 7110P cards. It also exhibits good scalability in terms of sequence length and size, and number of compute nodes for both database scanning and multiple sequence alignment. Furthermore, the achieved performance is highly competitive in comparison to optimized Xeon Phi and GPU implementations. Our implementation is available at https://github.com/turbo0628/LSDBS-mpi .

DRY MERGER RATE AND POST-MERGER FRACTION IN THE COMA CLUSTER CORE

Energy Technology Data Exchange (ETDEWEB)

Cordero, Juan P.; Campusano, Luis E.; Haines, Christopher P. [Departamento de Astronomía, Universidad de Chile, Casilla 36-D, Santiago (Chile); De Propris, Roberto [Finnish Centre for Astronomy with ESO, University of Turku, Vaisalantie 20, Piikkio, FI-21500 (Finland); Weinzirl, Tim [School of Physics and Astronomy, The University of Nottingham, University Park, Nottingham NG7 2RD (United Kingdom); Jogee, Shardha, E-mail: jcordero@das.uchile.cl [Department of Astronomy, The University of Texas at Austin, Austin, TX 78712-1205 (United States)

2016-01-20

We evaluate the dry merger activity in the Coma cluster, using a spectroscopically complete sample of 70 red-sequence (RS) galaxies, most of which (∼75%) are located within 0.2R{sub 200} (∼0.5 Mpc) from the cluster center, with data from the Coma Treasury Survey obtained with the Hubble Space Telescope. The fraction of close galaxy pairs in the sample is the proxy employed for the estimation of the merger activity. We identify 5 pairs and 1 triplet, enclosing a total of 13 galaxies, based on limits on projected separation and line-of-sight velocity difference. Of these systems, none show signs of ongoing interaction, and therefore we do not find any true mergers in our sample. This negative result sets a 1σ upper limit of 1.5% per Gyr for the major dry merger rate, consistent with the low rates expected in present-day clusters. Detailed examination of the images of all the RS galaxies in the sample reveals only one with low surface brightness features identifiable as the remnant of a past merger or interaction, implying a post-merger fraction below 2%.

DRY MERGER RATE AND POST-MERGER FRACTION IN THE COMA CLUSTER CORE

International Nuclear Information System (INIS)

Cordero, Juan P.; Campusano, Luis E.; Haines, Christopher P.; De Propris, Roberto; Weinzirl, Tim; Jogee, Shardha

2016-01-01

We evaluate the dry merger activity in the Coma cluster, using a spectroscopically complete sample of 70 red-sequence (RS) galaxies, most of which (∼75%) are located within 0.2R 200 (∼0.5 Mpc) from the cluster center, with data from the Coma Treasury Survey obtained with the Hubble Space Telescope. The fraction of close galaxy pairs in the sample is the proxy employed for the estimation of the merger activity. We identify 5 pairs and 1 triplet, enclosing a total of 13 galaxies, based on limits on projected separation and line-of-sight velocity difference. Of these systems, none show signs of ongoing interaction, and therefore we do not find any true mergers in our sample. This negative result sets a 1σ upper limit of 1.5% per Gyr for the major dry merger rate, consistent with the low rates expected in present-day clusters. Detailed examination of the images of all the RS galaxies in the sample reveals only one with low surface brightness features identifiable as the remnant of a past merger or interaction, implying a post-merger fraction below 2%

Radio emission of Abell galaxy clusters with red shifts from 0.02 to 0.075 at 102.5 MHz. Observations of clusters southward from the galactic plane

International Nuclear Information System (INIS)

Gubanov, A.G.

1983-01-01

The sample of 121 Abell clusters of galaxies with measured red shifts from 0.02 to 0.075, delta= 10 deg - +80 deg and within the completeness galactic-latitude region is presented. The completeness. with respect to the Abell's catalog is 80%. The completeness of the sample in function of distance (the completeness function) was constructed and the mean cluster density of 1.5x10 -6 Mpc -3 was derived. Observations at 102.5 MHz of 39 clusters southward from the galactic plane were carried out with BSA radio telescope. Flux density measurements for radio sources in the directions of the clusters have been made, integrated fluxes of clusters and luminosity estimations for their radio halos are presented. Radio emission of 11 clusters was detected , and for two of these and for other clust rs radio sources detected in the directions to the outskirts of clusters. Radio halos having the luminosity comparable to that of the A1656 (Coma) cluster are not typical for clusters

The angular clustering of WISE-selected active galactic nuclei: Different halos for obscured and unobscured active galactic nuclei

Energy Technology Data Exchange (ETDEWEB)

Donoso, E. [Instituto de Ciencias Astronómicas, de la Tierra, y del Espacio (ICATE), 5400 San Juan (Argentina); Yan, Lin [Infrared Processing and Analysis Center, Department of Astronomy, California Institute of Technology, Pasadena, CA 91125 (United States); Stern, D.; Assef, R. J. [Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA 91109 (United States)

2014-07-01

We calculate the angular correlation function for a sample of ∼170,000 active galactic nuclei (AGNs) extracted from the Wide-field Infrared Survey Explorer (WISE) catalog, selected to have red mid-IR colors (W1 – W2 > 0.8) and 4.6 μm flux densities brighter than 0.14 mJy). The sample is expected to be >90% reliable at identifying AGNs and to have a mean redshift of (z) = 1.1. In total, the angular clustering of WISE AGNs is roughly similar to that of optical AGNs. We cross-match these objects with the photometric Sloan Digital Sky Survey catalog and distinguish obscured sources with r – W2 > 6 from bluer, unobscured AGNs. Obscured sources present a higher clustering signal than unobscured sources. Since the host galaxy morphologies of obscured AGNs are not typical red sequence elliptical galaxies and show disks in many cases, it is unlikely that the increased clustering strength of the obscured population is driven by a host galaxy segregation bias. By using relatively complete redshift distributions from the COSMOS survey, we find that obscured sources at (z) ∼ 0.9 have a bias of b = 2.9 ± 0.6 and are hosted in dark matter halos with a typical mass of log (M/M {sub ☉} h {sup –1}) ∼ 13.5. In contrast, unobscured AGNs at (z) ∼ 1.1 have a bias of b = 1.6 ± 0.6 and inhabit halos of log (M/M {sub ☉} h {sup –1}) ∼ 12.4. These findings suggest that obscured AGNs inhabit denser environments than unobscured AGNs, and they are difficult to reconcile with the simplest AGN unification models, where obscuration is driven solely by orientation.

Determinant Representations of Sequences: A Survey

Directory of Open Access Journals (Sweden)

Moghaddamfar A. R.

2014-01-01

Full Text Available This is a survey of recent results concerning (integer matrices whose leading principal minors are well-known sequences such as Fibonacci, Lucas, Jacobsthal and Pell (subsequences. There are different ways for constructing such matrices. Some of these matrices are constructed by homogeneous or nonhomogeneous recurrence relations, and others are constructed by convolution of two sequences. In this article, we will illustrate the idea of these methods by constructing some integer matrices of this type.

STAR-TO-STAR IRON ABUNDANCE VARIATIONS IN RED GIANT BRANCH STARS IN THE GALACTIC GLOBULAR CLUSTER NGC 3201

International Nuclear Information System (INIS)

Simmerer, Jennifer; Ivans, Inese I.; Filler, Dan; Francois, Patrick; Charbonnel, Corinne; Monier, Richard; James, Gaël

2013-01-01

We present the metallicity as traced by the abundance of iron in the retrograde globular cluster NGC 3201, measured from high-resolution, high signal-to-noise spectra of 24 red giant branch stars. A spectroscopic analysis reveals a spread in [Fe/H] in the cluster stars at least as large as 0.4 dex. Star-to-star metallicity variations are supported both through photometry and through a detailed examination of spectra. We find no correlation between iron abundance and distance from the cluster core, as might be inferred from recent photometric studies. NGC 3201 is the lowest mass halo cluster to date to contain stars with significantly different [Fe/H] values.

Star-to-star Iron Abundance Variations in Red Giant Branch Stars in the Galactic Globular Cluster NGC 3201

Science.gov (United States)

Simmerer, Jennifer; Ivans, Inese I.; Filler, Dan; Francois, Patrick; Charbonnel, Corinne; Monier, Richard; James, Gaël

2013-02-01

We present the metallicity as traced by the abundance of iron in the retrograde globular cluster NGC 3201, measured from high-resolution, high signal-to-noise spectra of 24 red giant branch stars. A spectroscopic analysis reveals a spread in [Fe/H] in the cluster stars at least as large as 0.4 dex. Star-to-star metallicity variations are supported both through photometry and through a detailed examination of spectra. We find no correlation between iron abundance and distance from the cluster core, as might be inferred from recent photometric studies. NGC 3201 is the lowest mass halo cluster to date to contain stars with significantly different [Fe/H] values.

The “UV-route” to Search for Blue Straggler Stars in Globular Clusters: First Results from the HST UV Legacy Survey

Energy Technology Data Exchange (ETDEWEB)

Raso, S.; Ferraro, F. R.; Lanzoni, B. [Department of Physics and Astronomy, University of Bologna, Viale Berti Pichat, 6/2, Bologna (Italy); Dalessandro, E. [INAF Osservatorio Astronomico di Bologna, Via Ranzani 1, Bologna (Italy); Nardiello, D. [Department of Physics and Astronomy Galileo Galilei, University of Padova, Vicolo dell’Osservatorio 3, I-35122 Padova (Italy); Bellini, A. [Space Telescope Science Institute, 3700 San Martin Drive, Baltimore, MD 21218 (United States); Vesperini, E. [Department of Astronomy, Indiana University, Bloomington, IN, 47401 (United States)

2017-04-10

We used data from the Hubble Space Telescope UV Legacy Survey of Galactic Globular Clusters to select the Blue Straggler Star (BSS) population in four intermediate/high density systems (namely NGC 2808, NGC 6388, NGC 6541, and NGC 7078) through a “UV-guided search.” This procedure consists of using the F275W images in each cluster to construct the master list of detected sources, and then force it to the images acquired in the other filters. Such an approach optimizes the detection of relatively hot stars and allows the detection of a complete sample of BSSs even in the central region of high-density clusters, because the light from the bright cool giants, which dominates the optical emission in old stellar systems, is sensibly reduced at UV wavelengths. Our UV-guided selections of BSSs have been compared to the samples obtained in previous, optical-driven surveys, clearly demonstrating the efficiency of the UV approach. In each cluster we also measured the parameter A {sup +}, defined as the area enclosed between the cumulative radial distribution of BSSs and that of a reference population, which traces the level of BSS central segregation and the level of dynamical evolution suffered by the system. The values measured for the four clusters studied in this paper nicely fall along the dynamical sequence recently presented for a sample of 25 clusters.

ALMA Observations of Gas-rich Galaxies in z ∼ 1.6 Galaxy Clusters: Evidence for Higher Gas Fractions in High-density Environments

Energy Technology Data Exchange (ETDEWEB)

Noble, A. G.; McDonald, M. [Kavli Institute for Astrophysics and Space Research, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139 (United States); Muzzin, A. [Department of Physics and Astronomy, York University, 4700 Keele Street, Toronto, ON MJ3 1P3 (Canada); Nantais, J. [Departamento de Ciencias Físicas, Universidad Andres Bello, Fernandez Concha 700, Las Condes 7591538, Santiago, Región Metropolitana (Chile); Rudnick, G. [The University of Kansas, Department of Physics and Astronomy, 1251 Wescoe Hall Drive, Lawrence, KS 66045 (United States); Van Kampen, E.; Manilla-Robles, A. [European Southern Observatory, Karl-Schwarzschild-Strasse 2, D-85748 Garching bei München (Germany); Webb, T. M. A.; Delahaye, A. [Department of Physics, McGill University, 3600 rue University, Montréal, QC H3A 2T8 (Canada); Wilson, G.; DeGroot, A.; Foltz, R. [Department of Physics and Astronomy, University of California, Riverside, CA 92521 (United States); Yee, H. K. C. [Department of Astronomy and Astrophysics, University of Toronto, 50 St. George Street, Toronto, ON M5S 3H4 (Canada); Boone, K.; Hayden, B.; Perlmutter, S. [Department of Physics, University of California Berkeley, 366 LeConte Hall, MC 7300, Berkeley, CA 94720-7300 (United States); Cooper, M. C. [Department of Physics and Astronomy, University of California, Irvine, 4129 Frederick Reines Hall, Irvine, CA 92697 (United States); Demarco, R. [Departamento de Astronomía, Universidad de Concepción, Casilla 160-C, Concepción, Región del Biobío (Chile); Lidman, C., E-mail: noble@mit.edu [Australian Astronomical Observatory, 105 Delhi Road, North Ryde, NSW 2113 (Australia)

2017-06-20

We present ALMA CO (2–1) detections in 11 gas-rich cluster galaxies at z ∼ 1.6, constituting the largest sample of molecular gas measurements in z > 1.5 clusters to date. The observations span three galaxy clusters, derived from the Spitzer Adaptation of the Red-sequence Cluster Survey. We augment the >5 σ detections of the CO (2–1) fluxes with multi-band photometry, yielding stellar masses and infrared-derived star formation rates, to place some of the first constraints on molecular gas properties in z ∼ 1.6 cluster environments. We measure sizable gas reservoirs of 0.5–2 × 10{sup 11} M {sub ☉} in these objects, with high gas fractions ( f {sub gas}) and long depletion timescales ( τ ), averaging 62% and 1.4 Gyr, respectively. We compare our cluster galaxies to the scaling relations of the coeval field, in the context of how gas fractions and depletion timescales vary with respect to the star-forming main sequence. We find that our cluster galaxies lie systematically off the field scaling relations at z = 1.6 toward enhanced gas fractions, at a level of ∼4 σ , but have consistent depletion timescales. Exploiting CO detections in lower-redshift clusters from the literature, we investigate the evolution of the gas fraction in cluster galaxies, finding it to mimic the strong rise with redshift in the field. We emphasize the utility of detecting abundant gas-rich galaxies in high-redshift clusters, deeming them as crucial laboratories for future statistical studies.

Clustered and transient earthquake sequences in mid-continents

Science.gov (United States)

Liu, M.; Stein, S. A.; Wang, H.; Luo, G.

2012-12-01

Earthquakes result from sudden release of strain energy on faults. On plate boundary faults, strain energy is constantly accumulating from steady and relatively rapid relative plate motion, so large earthquakes continue to occur so long as motion continues on the boundary. In contrast, such steady accumulation of stain energy does not occur on faults in mid-continents, because the far-field tectonic loading is not steadily distributed between faults, and because stress perturbations from complex fault interactions and other stress triggers can be significant relative to the slow tectonic stressing. Consequently, mid-continental earthquakes are often temporally clustered and transient, and spatially migrating. This behavior is well illustrated by large earthquakes in North China in the past two millennia, during which no single large earthquakes repeated on the same fault segments, but moment release between large fault systems was complementary. Slow tectonic loading in mid-continents also causes long aftershock sequences. We show that the recent small earthquakes in the Tangshan region of North China are aftershocks of the 1976 Tangshan earthquake (M 7.5), rather than indicators of a new phase of seismic activity in North China, as many fear. Understanding the transient behavior of mid-continental earthquakes has important implications for assessing earthquake hazards. The sequence of large earthquakes in the New Madrid Seismic Zone (NMSZ) in central US, which includes a cluster of M~7 events in 1811-1812 and perhaps a few similar ones in the past millennium, is likely a transient process, releasing previously accumulated elastic strain on recently activated faults. If so, this earthquake sequence will eventually end. Using simple analysis and numerical modeling, we show that the large NMSZ earthquakes may be ending now or in the near future.

Optimising cluster survey design for planning schistosomiasis preventive chemotherapy.

Directory of Open Access Journals (Sweden)

Sarah C L Knowles

2017-05-01

Full Text Available The cornerstone of current schistosomiasis control programmes is delivery of praziquantel to at-risk populations. Such preventive chemotherapy requires accurate information on the geographic distribution of infection, yet the performance of alternative survey designs for estimating prevalence and converting this into treatment decisions has not been thoroughly evaluated.We used baseline schistosomiasis mapping surveys from three countries (Malawi, Côte d'Ivoire and Liberia to generate spatially realistic gold standard datasets, against which we tested alternative two-stage cluster survey designs. We assessed how sampling different numbers of schools per district (2-20 and children per school (10-50 influences the accuracy of prevalence estimates and treatment class assignment, and we compared survey cost-efficiency using data from Malawi. Due to the focal nature of schistosomiasis, up to 53% simulated surveys involving 2-5 schools per district failed to detect schistosomiasis in low endemicity areas (1-10% prevalence. Increasing the number of schools surveyed per district improved treatment class assignment far more than increasing the number of children sampled per school. For Malawi, surveys of 15 schools per district and 20-30 children per school reliably detected endemic schistosomiasis and maximised cost-efficiency. In sensitivity analyses where treatment costs and the country considered were varied, optimal survey size was remarkably consistent, with cost-efficiency maximised at 15-20 schools per district.Among two-stage cluster surveys for schistosomiasis, our simulations indicated that surveying 15-20 schools per district and 20-30 children per school optimised cost-efficiency and minimised the risk of under-treatment, with surveys involving more schools of greater cost-efficiency as treatment costs rose.

Lithium in Open Cluster Red Giants Hosting Substellar Companions

Science.gov (United States)

Carlberg, Joleen K.; Smith, Verne V.; Cunha, Katia; Carpenter, Kenneth G.

2016-02-01

We have measured stellar parameters, [Fe/H], lithium abundances, rotation, and 12C/13C in a small sample of red giants (RGs) in three open clusters that are each home to a RG star that hosts a substellar companion (SSC) (NGC 2423 3, NGC 4349 127, and BD+12 1917 in M67). Our goal is to explore whether the presence of SSCs influences the Li content. Both 12C/13C and stellar rotation are measured as additional tracers of stellar mixing. One of the companion hosts, NGC 2423 3, is found to be Li-rich with A(Li){}{{NLTE}} = 1.56 dex, and this abundance is significantly higher than the A(Li) of the two comparison stars in NGC 2423. All three SSC hosts have the highest A(Li) and 12C/13C when compared to the control RGs in their respective clusters; however, except for NGC 2423 3, at least one control star has similarly high abundances within the uncertainties. Higher A(Li) could suggest that the formation or presence of planets plays a role in the degree of internal mixing on or before the RG branch. However, a multitude of factors affect A(Li) during the RG phase, and when the abundances of our sample are compared with the abundances of RGs in other open clusters available in the literature, we find that they all fall well within a much larger distribution of A(Li) and 12C/13C. Thus, even the high Li in NGC 2423 3 cannot be concretely tied to the presence of the SSC.

Hα star formation rates of z > 1 galaxy clusters in the IRAC shallow cluster survey

International Nuclear Information System (INIS)

Zeimann, Gregory R.; Stanford, S. A.; Brodwin, Mark; Gonzalez, Anthony H.; Mancone, Conor; Snyder, Gregory F.; Stern, Daniel; Eisenhardt, Peter; Dey, Arjun; Moustakas, John

2013-01-01

We present Hubble Space Telescope near-IR spectroscopy for 18 galaxy clusters at 1.0 Cluster Survey. We use Wide Field Camera 3 grism data to spectroscopically identify Hα emitters in both the cores of galaxy clusters as well as in field galaxies. We find a large cluster-to-cluster scatter in the star formation rates within a projected radius of 500 kpc, and many of our clusters (∼60%) have significant levels of star formation within a projected radius of 200 kpc. A stacking analysis reveals that dust reddening in these star-forming galaxies is positively correlated with stellar mass and may be higher in the field than the cluster at a fixed stellar mass. This may indicate a lower amount of gas in star-forming cluster galaxies than in the field population. Also, Hα equivalent widths of star-forming galaxies in the cluster environment are still suppressed below the level of the field. This suppression is most significant for lower mass galaxies (log M * < 10.0 M ☉ ). We therefore conclude that environmental effects are still important at 1.0 clusters with log M * ≲ 10.0 M ☉ .

PRIMUS: Galaxy clustering as a function of luminosity and color at 0.2 < z < 1

Energy Technology Data Exchange (ETDEWEB)

Skibba, Ramin A.; Smith, M. Stephen M.; Coil, Alison L.; Mendez, Alexander J. [Department of Physics, Center for Astrophysics and Space Sciences, University of California, 9500 Gilman Drive, La Jolla, San Diego, CA 92093 (United States); Moustakas, John [Department of Physics and Astronomy, Siena College, 515 Loudon Road, Loudonville, NY 12211 (United States); Aird, James [Department of Physics, Durham University, Durham DH1 3LE (United Kingdom); Blanton, Michael R. [Center for Cosmology and Particle Physics, Department of Physics, New York University, 4 Washington Place, New York, NY 10003 (United States); Bray, Aaron D.; Eisenstein, Daniel J. [Harvard-Smithsonian Center for Astrophysics, 60 Garden Street, Cambridge, MA 02138 (United States); Cool, Richard J. [MMT Observatory, 1540 E Second Street, University of Arizona, Tucson, AZ 85721 (United States); Wong, Kenneth C. [Steward Observatory, The University of Arizona, 933 North Cherry Avenue, Tucson, AZ 85721 (United States); Zhu, Guangtun, E-mail: rskibba@ucsd.edu [Department of Physics and Astronomy, Johns Hopkins University, 3400 North Charles Street, Baltimore, MD 21218 (United States)

2014-04-01

We present measurements of the luminosity and color-dependence of galaxy clustering at 0.2 < z < 1.0 in the Prism Multi-object Survey. We quantify the clustering with the redshift-space and projected two-point correlation functions, ξ(r{sub p} , π) and w{sub p} (r{sub p} ), using volume-limited samples constructed from a parent sample of over ∼130, 000 galaxies with robust redshifts in seven independent fields covering 9 deg{sup 2} of sky. We quantify how the scale-dependent clustering amplitude increases with increasing luminosity and redder color, with relatively small errors over large volumes. We find that red galaxies have stronger small-scale (0.1 Mpc h {sup –1} < r{sub p} < 1 Mpc h {sup –1}) clustering and steeper correlation functions compared to blue galaxies, as well as a strong color dependent clustering within the red sequence alone. We interpret our measured clustering trends in terms of galaxy bias and obtain values of b {sub gal} ≈ 0.9-2.5, quantifying how galaxies are biased tracers of dark matter depending on their luminosity and color. We also interpret the color dependence with mock catalogs, and find that the clustering of blue galaxies is nearly constant with color, while redder galaxies have stronger clustering in the one-halo term due to a higher satellite galaxy fraction. In addition, we measure the evolution of the clustering strength and bias, and we do not detect statistically significant departures from passive evolution. We argue that the luminosity- and color-environment (or halo mass) relations of galaxies have not significantly evolved since z ∼ 1. Finally, using jackknife subsampling methods, we find that sampling fluctuations are important and that the COSMOS field is generally an outlier, due to having more overdense structures than other fields; we find that 'cosmic variance' can be a significant source of uncertainty for high-redshift clustering measurements.

THE MASSIVE AND DISTANT CLUSTERS OF WISE SURVEY. II. INITIAL SPECTROSCOPIC CONFIRMATION OF z ∼ 1 GALAXY CLUSTERS SELECTED FROM 10,000 deg2

International Nuclear Information System (INIS)

Stanford, S. A.; Gonzalez, Anthony H.; Gettings, Daniel P.; Brodwin, Mark; Eisenhardt, Peter R. M.; Stern, Daniel; Wylezalek, Dominika

2014-01-01

We present optical and infrared imaging and optical spectroscopy of galaxy clusters which were identified as part of an all-sky search for high-redshift galaxy clusters, the Massive and Distant Clusters of WISE Survey (MaDCoWS). The initial phase of MaDCoWS combined infrared data from the all-sky data release of the Wide-field Infrared Survey Explorer (WISE) with optical data from the Sloan Digital Sky Survey to select probable z ∼ 1 clusters of galaxies over an area of 10,000 deg 2 . Our spectroscopy confirms 19 new clusters at 0.7 < z < 1.3, half of which are at z > 1, demonstrating the viability of using WISE to identify high-redshift galaxy clusters. The next phase of MaDCoWS will use the greater depth of the AllWISE data release to identify even higher redshift cluster candidates

THE XMM CLUSTER SURVEY: THE STELLAR MASS ASSEMBLY OF FOSSIL GALAXIES

Energy Technology Data Exchange (ETDEWEB)

Harrison, Craig D.; Miller, Christopher J. [Department of Astronomy, University of Michigan, Ann Arbor, MI 48109 (United States); Richards, Joseph W.; Deadman, Paul-James [Center for Time Domain Informatics, University of California, Berkeley, CA 94720 (United States); Lloyd-Davies, E. J.; Kathy Romer, A.; Mehrtens, Nicola; Liddle, Andrew R. [Astronomy Centre, University of Sussex, Falmer, Brighton BN1 9QH (United Kingdom); Hoyle, Ben [Institute of Sciences of the Cosmos (ICCUB) and IEEC, Physics Department, University of Barcelona, Barcelona 08024 (Spain); Hilton, Matt [Astrophysics and Cosmology Research Unit, School of Mathematical Sciences, University of KwaZulu-Natal, Private Bag X54001, Durban 4000 (South Africa); Stott, John P.; Capozzi, Diego; Collins, Chris A. [Astrophysics Research Institute, Liverpool John Moores University, Twelve Quays House, Egerton Wharf, Birkenhead CH41 1LD (United Kingdom); Sahlen, Martin [Oskar Klein Centre for Cosmoparticle Physics, Department of Physics, Stockholm University, AlbaNova, SE-106 91 Stockholm (Sweden); Stanford, S. Adam [Physics Department, University of California, Davis, CA 95616 (United States); Viana, Pedro T. P., E-mail: craigha@umich.edu [Centro de Astrofisica da Universidade do Porto, Rua das Estrelas, 4150-762 Porto (Portugal)

2012-06-10

This paper presents both the result of a search for fossil systems (FSs) within the XMM Cluster Survey and the Sloan Digital Sky Survey and the results of a study of the stellar mass assembly and stellar populations of their fossil galaxies. In total, 17 groups and clusters are identified at z < 0.25 with large magnitude gaps between the first and fourth brightest galaxies. All the information necessary to classify these systems as fossils is provided. For both groups and clusters, the total and fractional luminosity of the brightest galaxy is positively correlated with the magnitude gap. The brightest galaxies in FSs (called fossil galaxies) have stellar populations and star formation histories which are similar to normal brightest cluster galaxies (BCGs). However, at fixed group/cluster mass, the stellar masses of the fossil galaxies are larger compared to normal BCGs, a fact that holds true over a wide range of group/cluster masses. Moreover, the fossil galaxies are found to contain a significant fraction of the total optical luminosity of the group/cluster within 0.5 R{sub 200}, as much as 85%, compared to the non-fossils, which can have as little as 10%. Our results suggest that FSs formed early and in the highest density regions of the universe and that fossil galaxies represent the end products of galaxy mergers in groups and clusters.

VizieR Online Data Catalog: HST/ACS Coma Cluster Survey. VI. (den Brok+, 2011)

Science.gov (United States)

den Brok, M.; Peletier, R. F.; Valentijn, E. A.; Balcells, M.; Carter, D.; Erwin, P.; Ferguson, H. C.; Goudfrooij, P.; Graham, A. W.; Hammer, D.; Lucey, J. R.; Trentham, N.; Guzman, R.; Hoyos, C.; Verdoes Kleijn, G.; Jogee, S.; Karick, A. M.; Marinova, I.; Mouhcine, M.; Weinzirl, T.

2018-01-01

We have used the data from the HST/ACS Coma Cluster Survey, a deep two-passband imaging survey of the Coma cluster. A full description of the observations and data reduction can be found in Paper I (Carter et al., 2008ApJS..176..424C). We have derived colour gradients for a sample of confirmed or very likely Coma cluster members. (2 data files).

Characterization of Omega-WINGS galaxy clusters. I. Stellar light and mass profiles

Science.gov (United States)

Cariddi, S.; D'Onofrio, M.; Fasano, G.; Poggianti, B. M.; Moretti, A.; Gullieuszik, M.; Bettoni, D.; Sciarratta, M.

2018-02-01

Context. Galaxy clusters are the largest virialized structures in the observable Universe. Knowledge of their properties provides many useful astrophysical and cosmological information. Aims: Our aim is to derive the luminosity and stellar mass profiles of the nearby galaxy clusters of the Omega-WINGS survey and to study the main scaling relations valid for such systems. Methods: We merged data from the WINGS and Omega-WINGS databases, sorted the sources according to the distance from the brightest cluster galaxy (BCG), and calculated the integrated luminosity profiles in the B and V bands, taking into account extinction, photometric and spatial completeness, K correction, and background contribution. Then, by exploiting the spectroscopic sample we derived the stellar mass profiles of the clusters. Results: We obtained the luminosity profiles of 46 galaxy clusters, reaching r200 in 30 cases, and the stellar mass profiles of 42 of our objects. We successfully fitted all the integrated luminosity growth profiles with one or two embedded Sérsic components, deriving the main clusters parameters. Finally, we checked the main scaling relation among the clusters parameters in comparison with those obtained for a selected sample of early-type galaxies (ETGs) of the same clusters. Conclusions: We found that the nearby galaxy clusters are non-homologous structures such as ETGs and exhibit a color-magnitude (CM) red-sequence relation very similar to that observed for galaxies in clusters. These properties are not expected in the current cluster formation scenarios. In particular the existence of a CM relation for clusters, shown here for the first time, suggests that the baryonic structures grow and evolve in a similar way at all scales.

Epidemiological analysis of Salmonella clusters identified by whole genome sequencing, England and Wales 2014.

Science.gov (United States)

Waldram, Alison; Dolan, Gayle; Ashton, Philip M; Jenkins, Claire; Dallman, Timothy J

2018-05-01

The unprecedented level of bacterial strain discrimination provided by whole genome sequencing (WGS) presents new challenges with respect to the utility and interpretation of the data. Whole genome sequences from 1445 isolates of Salmonella belonging to the most commonly identified serotypes in England and Wales isolated between April and August 2014 were analysed. Single linkage single nucleotide polymorphism thresholds at the 10, 5 and 0 level were explored for evidence of epidemiological links between clustered cases. Analysis of the WGS data organised 566 of the 1445 isolates into 32 clusters of five or more. A statistically significant epidemiological link was identified for 17 clusters. The clusters were associated with foreign travel (n = 8), consumption of Chinese takeaways (n = 4), chicken eaten at home (n = 2), and one each of the following; eating out, contact with another case in the home and contact with reptiles. In the same time frame, one cluster was detected using traditional outbreak detection methods. WGS can be used for the highly specific and highly sensitive detection of biologically related isolates when epidemiological links are obscured. Improvements in the collection of detailed, standardised exposure information would enhance cluster investigations. Copyright © 2017 Elsevier Ltd. All rights reserved.

The Open Cluster Chemical Abundances and Mapping (OCCAM) Survey: Current Status

Science.gov (United States)

Frinchaboy, Peter; O'Connell, Julia; Donor, John; Cunha, Katia; Thompson, Benjamin; Melendez, Matthew; Shetrone, Matthew; Zasowski, Gail; Majewski, Steven R.; APOGEE TEAM

2018-01-01

The Open Cluster Chemical Analysis and Mapping (OCCAM) survey aims to produce a comprehensive, uniform, infrared-based data set forhundreds of open clusters, and constrain key Galactic dynamical and chemical parameters using the SDSS/APOGEE survey and follow-up from the McDonald Observatory Otto Struve 2.1-m telescope and Sandiford Cass Echelle Spectrograph (R ~ 60,000). We report on multi-element radial abundance gradients obtained from a sample of over 30 disk open clusters. The APOGEE chemical abundances were derived automatically by the ASPCAP pipeline and these are part of the SDSS IV Data Release 14, optical follow-up were analyzed using equivalent width analysis and spectral synthesis. We present the current open cluster sample that spans a significant range in age allowing exploration of the evolution of the Galactic abundance gradients. This work is supported by an NSF AAG grants AST-1311835 & AST-1715662.

Interference by clustered regularly interspaced short palindromic repeat (CRISPR) RNA is governed by a seed sequence

NARCIS (Netherlands)

Semenova, E.V.; Jore, M.M.; Westra, E.R.; Oost, van der J.; Brouns, S.J.J.

2011-01-01

Prokaryotic clustered regularly interspaced short palindromic repeat (CRISPR)/Cas (CRISPR-associated sequences) systems provide adaptive immunity against viruses when a spacer sequence of small CRISPR RNA (crRNA) matches a protospacer sequence in the viral genome. Viruses that escape CRISPR/Cas

Chemical Abundances of Red Giant Branch Stars in the Globular Cluster NGC 288

Science.gov (United States)

Hsyu, Tiffany; Johnson, C. I.; Pilachowski, C. A.; Lee, Y.; Rich, R. M.

2013-01-01

We present chemical abundances and radial velocities for ~30 red giant branch (RGB) stars in the globular cluster NGC 288. The results are based on moderate resolution (R≈18,000) and moderate signal-to-noise ratio 50-75) obtained with the Hydra multi-object spectrograph on the Blanco 4m telescope. NGC 288 has been shown to exhibit two separate RGBs and we investigate possible differences in metallicity and/or light element abundances between stars on each branch. We present a new filter tracing for the CTIO Calcium HK narrow band filter and explore its effects on previous globular cluster color-magnitude diagrams. We also compare the light element abundance patterns of NGC 288 to those of other similar metallicity halo clusters. This material is based upon work supported by the National Science Foundation under award No.AST-1003201 to C.I.J. C.A.P. gratefully acknowledges support from the Daniel Kirkwood Research Fund at Indiana University. R.M.R. acknowledges support from NSF grants AST-0709479 and AST-121120995.

A NEW TEST OF THE STATISTICAL NATURE OF THE BRIGHTEST CLUSTER GALAXIES

International Nuclear Information System (INIS)

Lin, Yen-Ting; Ostriker, Jeremiah P.; Miller, Christopher J.

2010-01-01

A novel statistic is proposed to examine the hypothesis that all cluster galaxies are drawn from the same luminosity distribution (LD). In such a 'statistical model' of galaxy LD, the brightest cluster galaxies (BCGs) are simply the statistical extreme of the galaxy population. Using a large sample of nearby clusters, we show that BCGs in high luminosity clusters (e.g., L tot ∼> 4 x 10 11 h -2 70 L sun ) are unlikely (probability ≤3 x 10 -4 ) to be drawn from the LD defined by all red cluster galaxies more luminous than M r = -20. On the other hand, BCGs in less luminous clusters are consistent with being the statistical extreme. Applying our method to the second brightest galaxies, we show that they are consistent with being the statistical extreme, which implies that the BCGs are also distinct from non-BCG luminous, red, cluster galaxies. We point out some issues with the interpretation of the classical tests proposed by Tremaine and Richstone (TR) that are designed to examine the statistical nature of BCGs, investigate the robustness of both our statistical test and those of TR against difficulties in photometry of galaxies of large angular size, and discuss the implication of our findings on surveys that use the luminous red galaxies to measure the baryon acoustic oscillation features in the galaxy power spectrum.

Amplitudes of solar-like oscillations: Constraints from red giants in open clusters observed by Kepler

DEFF Research Database (Denmark)

Stello, Dennis; Huber, Daniel; Kallinger, Thomas

2011-01-01

implies that the stellar parameters can be measured to much higher precision than what is usually achievable for single stars. This makes clusters ideal for exploring the relation between the mode amplitude of solar-like oscillations and the global stellar properties. We have analyzed data obtained......Scaling relations that link asteroseismic quantities to global stellar properties are important for gaining understanding of the intricate physics that underpins stellar pulsations. The common notion that all stars in an open cluster have essentially the same distance, age, and initial composition...... with NASA's Kepler space telescope to study solar-like oscillations in 100 red giant stars located in either of the three open clusters, NGC 6791, NGC 6819, and NGC 6811. By fitting the measured amplitudes to predictions from simple scaling relations that depend on luminosity, mass, and effective...

Testing Scaling Relations for Solar-like Oscillations from the Main Sequence to Red Giants Using Kepler Data

DEFF Research Database (Denmark)

Huber, D.; Bedding, T.R.; Stello, D.

2011-01-01

), and oscillation amplitudes. We show that the difference of the Δν-νmax relation for unevolved and evolved stars can be explained by different distributions in effective temperature and stellar mass, in agreement with what is expected from scaling relations. For oscillation amplitudes, we show that neither (L/M) s......We have analyzed solar-like oscillations in ~1700 stars observed by the Kepler Mission, spanning from the main sequence to the red clump. Using evolutionary models, we test asteroseismic scaling relations for the frequency of maximum power (νmax), the large frequency separation (Δν...... scaling nor the revised scaling relation by Kjeldsen & Bedding is accurate for red-giant stars, and demonstrate that a revised scaling relation with a separate luminosity-mass dependence can be used to calculate amplitudes from the main sequence to red giants to a precision of ~25%. The residuals show...

GibbsCluster: unsupervised clustering and alignment of peptide sequences

DEFF Research Database (Denmark)

Andreatta, Massimo; Alvarez, Bruno; Nielsen, Morten

2017-01-01

motif characterizing each cluster. Several parameters are available to customize cluster analysis, including adjustable penalties for small clusters and overlapping groups and a trash cluster to remove outliers. As an example application, we used the server to deconvolute multiple specificities in large......-scale peptidome data generated by mass spectrometry. The server is available at http://www.cbs.dtu.dk/services/GibbsCluster-2.0....

High-resolution Spectroscopic Observations of Single Red Giants in Three Open Clusters: NGC 2360, NGC 3680, and NGC 5822

Science.gov (United States)

Peña Suárez, V. J.; Sales Silva, J. V.; Katime Santrich, O. J.; Drake, N. A.; Pereira, C. B.

2018-02-01

Single stars in open clusters with known distances are important targets in constraining the nucleosynthesis process since their ages and luminosities are also known. In this work, we analyze a sample of 29 single red giants of the open clusters NGC 2360, NGC 3680, and NGC 5822 using high-resolution spectroscopy. We obtained atmospheric parameters, abundances of the elements C, N, O, Na, Mg, Al, Ca, Si, Ti, Ni, Cr, Y, Zr, La, Ce, and Nd, as well as radial and rotational velocities. We employed the local thermodynamic equilibrium atmospheric models of Kurucz and the spectral analysis code MOOG. Rotational velocities and light-element abundances were derived using spectral synthesis. Based on our analysis of the single red giants in these three open clusters, we could compare, for the first time, their abundance pattern with that of the binary stars of the same clusters previously studied. Our results show that the abundances of both single and binary stars of the open clusters NGC 2360, NGC 3680, and NGC 5822 do not have significant differences. For the elements created by the s-process, we observed that the open clusters NGC 2360, NGC 3680, and NGC 5822 also follow the trend already raised in the literature that young clusters have higher s-process element abundances than older clusters. Finally, we observed that the three clusters of our sample exhibit a trend in the [Y/Mg]-age relation, which may indicate the ability of the [Y/Mg] ratio to be used as a clock for the giants. Based on the observations made with the 2.2 m telescope at the European Southern Observatory (La Silla, Chile) under an agreement with Observatório Nacional and under an agreement between Observatório Nacional and Max-Planck Institute für Astronomie.

Female cluster headache in the United States of America: what are the gender differences? Results from the United States Cluster Headache Survey.

Science.gov (United States)

Rozen, Todd D; Fishman, Royce S

2012-06-15

To present results from the United States Cluster Headache Survey regarding gender differences in cluster headache demographics, clinical characteristics, diagnostic delay, triggers, treatment response and personal burden. Very few studies have looked at the gender differences in cluster headache presentation. The United States Cluster Headache Survey is the largest study of cluster headache sufferers ever completed in the United States and it is also the largest study of female cluster headache patients ever presented. The total survey consisted of 187 multiple choice questions which dealt with various issues related to cluster headache including: demographics, clinical characteristics, concomitant medical conditions, family history, triggers, smoking history, diagnosis, treatment response and personal burden. A group of questions were specifically targeted to female cluster headache patients. The survey was placed on a website from October to December 2008. For all survey responders the diagnosis of cluster headache needed to be made by a neurologist but there was no validation of the headache diagnosis by the authors. 1134 individuals completed the survey (816 male, 318 female). Key Points that define the differences between female and male cluster headache include: a. Age of onset: women develop cluster headache at an earlier age than men and are more likely to develop a second peak of cluster headache onset after 50 years of age. b. Family history: woman cluster headache sufferers are more likely to have a family history of both cluster headache and migraine and have an increased familial risk of Parkinson's disease. c. Comorbid conditions: female cluster headaches sufferers are significantly more likely to experience depression and have asthma than males. d. Aura issues: aura with cluster headache is equally common in both sexes, but aura duration is shorter in women. Women are much more likely to experience sensory, language and brainstem auras. e. Pain

Genetic signatures of adaptation revealed from transcriptome sequencing of Arctic and red foxes.

Science.gov (United States)

Kumar, Vikas; Kutschera, Verena E; Nilsson, Maria A; Janke, Axel

2015-08-07

The genus Vulpes (true foxes) comprises numerous species that inhabit a wide range of habitats and climatic conditions, including one species, the Arctic fox (Vulpes lagopus) which is adapted to the arctic region. A close relative to the Arctic fox, the red fox (Vulpes vulpes), occurs in subarctic to subtropical habitats. To study the genetic basis of their adaptations to different environments, transcriptome sequences from two Arctic foxes and one red fox individual were generated and analyzed for signatures of positive selection. In addition, the data allowed for a phylogenetic analysis and divergence time estimate between the two fox species. The de novo assembly of reads resulted in more than 160,000 contigs/transcripts per individual. Approximately 17,000 homologous genes were identified using human and the non-redundant databases. Positive selection analyses revealed several genes involved in various metabolic and molecular processes such as energy metabolism, cardiac gene regulation, apoptosis and blood coagulation to be under positive selection in foxes. Branch site tests identified four genes to be under positive selection in the Arctic fox transcriptome, two of which are fat metabolism genes. In the red fox transcriptome eight genes are under positive selection, including molecular process genes, notably genes involved in ATP metabolism. Analysis of the three transcriptomes and five Sanger re-sequenced genes in additional individuals identified a lower genetic variability within Arctic foxes compared to red foxes, which is consistent with distribution range differences and demographic responses to past climatic fluctuations. A phylogenomic analysis estimated that the Arctic and red fox lineages diverged about three million years ago. Transcriptome data are an economic way to generate genomic resources for evolutionary studies. Despite not representing an entire genome, this transcriptome analysis identified numerous genes that are relevant to arctic

Amdoparvovirus Infection in Red Pandas ( Ailurus fulgens).

Science.gov (United States)

Alex, Charles E; Kubiski, Steven V; Li, Linlin; Sadeghi, Mohammadreza; Wack, Raymund F; McCarthy, Megan A; Pesavento, Joseph B; Delwart, Eric; Pesavento, Patricia A

2018-01-01

Aleutian mink disease virus is the type species in the genus Amdoparvovirus, and in mink and other Mustelidae can cause either subclinical disease or fatal chronic immune stimulation and immune complex disease. The authors describe a novel amdoparvovirus in the endangered red panda ( Ailurus fulgens), discovered using viral metagenomics. The authors analyzed the prevalence, tissue distribution, and disease association by PCR, in situ hybridization, electron microscopy, and histology in a group of 6 red pandas from a single zoological collection. The study incorporates a fecal shedding survey and analysis of tissues from 4 necropsied animals over a 12-year span. The tentatively named red panda amdoparvovirus (RpAPV) was detected in the feces and/or tissues of all animals tested. At necropsy of 1 geriatric animal, infection was associated with pyogranulomatous peritonitis, pancreatitis, and myocarditis. Other animals had detectable low-level viral nucleic acid in lymph nodes and both oral and intestinal epithelium at the time of necropsy. Full-length genome sequences of RpAPV strains from 2 animals had 12% sequence divergence, demonstrating genetic diversity even among in-contact animals. RpAPV is a persistent infection in this cohort of red pandas, and has variable clinical expression.

THE SNAPSHOT HUBBLE U-BAND CLUSTER SURVEY (SHUCS). I. SURVEY DESCRIPTION AND FIRST APPLICATION TO THE MIXED STAR CLUSTER POPULATION OF NGC 4041

Energy Technology Data Exchange (ETDEWEB)

Konstantopoulos, I. S. [Australian Astronomical Observatory, P.O. Box 915, North Ryde NSW 1670 (Australia); Smith, L. J. [Space Telescope Science Institute and European Space Agency, 3700 San Martin Drive, Baltimore, MD 21218 (United States); Adamo, A. [Max-Planck-Institut for Astronomy, Koenigstuhl 17, D-69117 Heidelberg (Germany); Silva-Villa, E. [Departement de Physique, de Genie Physique et d' Optique, and Centre de Recherche en Astrophysique du Quebec (CRAQ), Universite Laval, Quebec (Canada); Gallagher, J. S.; Ryon, J. E. [Department of Astronomy, University of Wisconsin-Madison, 5534 Sterling, 475 North Charter Street, Madison WI 53706 (United States); Bastian, N. [Astrophysics Research Institute, Liverpool John Moores University, Egerton Wharf, Birkenhead, CH41 1LD (United Kingdom); Westmoquette, M. S. [European Southern Observatory, Karl-Schwarzschild-Strasse 2, D-85748 Garching bei Muenchen (Germany); Zackrisson, E. [Department of Astronomy, Stockholm University, Oscar Klein Centre, AlbaNova, Stockholm SE-106 91 (Sweden); Larsen, S. S. [Department of Astrophysics/IMAPP, Radboud University Nijmegen, P.O. Box 9010, 6500 GL Nijmegen (Netherlands); Weisz, D. R. [Department of Astronomy, Box 351580, University of Washington, Seattle, WA 98195 (United States); Charlton, J. C., E-mail: iraklis@aao.gov.au [Department of Astronomy and Astrophysics, The Pennsylvania State University, University Park, PA 16802 (United States)

2013-05-15

We present the Snapshot Hubble U-band Cluster Survey (SHUCS), a project aimed at characterizing the star cluster populations of 10 nearby galaxies (d < 23 Mpc, half within Almost-Equal-To 12 Mpc) through new F336W (U-band equivalent) imaging from Wide Field Camera 3, and archival BVI-equivalent data with the Hubble Space Telescope. Completing the UBVI baseline reduces the age-extinction degeneracy of optical colors, thus enabling the measurement of reliable ages and masses for the thousands of clusters covered by our survey. The sample consists chiefly of face-on spiral galaxies at low inclination, in various degrees of isolation (isolated, in group, merging), and includes two active galactic nucleus hosts. This first paper outlines the survey itself, the observational datasets, the analysis methods, and presents a proof-of-concept study of the large-scale properties and star cluster population of NGC 4041, a massive SAbc galaxy at a distance of Almost-Equal-To 23 Mpc, and part of a small grouping of six giant members. We resolve two structural components with distinct stellar populations, a morphology more akin to merging and interacting systems. We also find strong evidence of a truncated, Schechter-type mass function, and a similarly segmented luminosity function. These results indicate that binning must erase much of the substructure present in the mass and luminosity functions, and might account for the conflicting reports on the intrinsic shape of these functions in the literature. We also note a tidal feature in the outskirts of the galaxy in Galaxy Evolution Explorer UV imaging, and follow it up with a comprehensive multi-wavelength study of NGC 4041 and its parent group. We deduce a minor merger as a likely cause of its segmented structure and the observed pattern of a radially decreasing star formation rate. We propose that combining the study of star cluster populations with broadband metrics is not only advantageous, but often easily achievable thorough

Two-stage clustering (TSC: a pipeline for selecting operational taxonomic units for the high-throughput sequencing of PCR amplicons.

Directory of Open Access Journals (Sweden)

Xiao-Tao Jiang

Full Text Available Clustering 16S/18S rRNA amplicon sequences into operational taxonomic units (OTUs is a critical step for the bioinformatic analysis of microbial diversity. Here, we report a pipeline for selecting OTUs with a relatively low computational demand and a high degree of accuracy. This pipeline is referred to as two-stage clustering (TSC because it divides tags into two groups according to their abundance and clusters them sequentially. The more abundant group is clustered using a hierarchical algorithm similar to that in ESPRIT, which has a high degree of accuracy but is computationally costly for large datasets. The rarer group, which includes the majority of tags, is then heuristically clustered to improve efficiency. To further improve the computational efficiency and accuracy, two preclustering steps are implemented. To maintain clustering accuracy, all tags are grouped into an OTU depending on their pairwise Needleman-Wunsch distance. This method not only improved the computational efficiency but also mitigated the spurious OTU estimation from 'noise' sequences. In addition, OTUs clustered using TSC showed comparable or improved performance in beta-diversity comparisons compared to existing OTU selection methods. This study suggests that the distribution of sequencing datasets is a useful property for improving the computational efficiency and increasing the clustering accuracy of the high-throughput sequencing of PCR amplicons. The software and user guide are freely available at http://hwzhoulab.smu.edu.cn/paperdata/.

Sequencing, physical organization and kinetic expression of the patulin biosynthetic gene cluster from Penicillium expansum

International Nuclear Information System (INIS)

Tannous, J.; El Khoury, R.; El Khoury, A.; Lteif, R.; Snini, S.; Lippi, Y.; Oswald, I.; Olivier, P.; Atoui, A.

2014-01-01

Patulin is a polyketide-derived mycotoxin produced by numerous filamentous fungi. Among them, Penicillium expansum is by far the most problematic species. This fungus is a destructive phytopathogen capable of growing on fruit, provoking the blue mold decay of apples and producing significant amounts of patulin. The biosynthetic pathway of this mycotoxin is chemically well-characterized, but its genetic bases remain largely unknown with only few characterized genes in less economic relevant species. The present study consisted of the identification and positional organization of the patulin gene cluster in P. expansum strain NRRL 35695. Several amplification reactions were performed with degenerative primers that were designed based on sequences from the orthologous genes available in other species. An improved genome Walking approach was used in order to sequence the remaining adjacent genes of the cluster. RACE-PCR was also carried out from mRNAs to determine the start and stop codons of the coding sequences. The patulin gene cluster in P. expansum consists of 15 genes in the following order: patH, patG, patF, patE, patD, patC, patB, patA, patM, patN, patO, patL, patI, patJ, and patK. These genes share 60–70% of identity with orthologous genes grouped differently, within a putative patulin cluster described in a non-producing strain of Aspergillus clavatus. The kinetics of patulin cluster genes expression was studied under patulin-permissive conditions (natural apple-based medium) and patulin-restrictive conditions (Eagle's minimal essential medium), and demonstrated a significant association between gene expression and patulin production. In conclusion, the sequence of the patulin cluster in P. expansum constitutes a key step for a better understanding of themechanisms leading to patulin production in this fungus. It will allow the role of each gene to be elucidated, and help to define strategies to reduce patulin production in apple-based products

Discovery of four gravitational lensing systems by clusters in the SDSS DR6

International Nuclear Information System (INIS)

Wen Zhonglue; Han Jinlin; Xu Xiangyang; Jiang Yunying; Guo Zhiqing; Wang Pengfei; Liu Fengshan

2009-01-01

We report the discovery of 4 strong gravitational lensing systems by visual inspections of the Sloan Digital Sky Survey images of galaxy clusters in Data Release 6 (SDSS DR6). Two of the four systems show Einstein rings while the others show tangential giant arcs. These arcs or rings have large angular separations (> 8) from the bright central galaxies and show bluer color compared with the red cluster galaxies. In addition, we found 5 probable and 4 possible lenses by galaxy clusters. (letters)

The Next Generation Virgo Cluster Survey. VII. The Intrinsic Shapes of Low-luminosity Galaxies in the Core of the Virgo Cluster, and a Comparison with the Local Group

Science.gov (United States)

Sánchez-Janssen, Rubén; Ferrarese, Laura; MacArthur, Lauren A.; Côté, Patrick; Blakeslee, John P.; Cuillandre, Jean-Charles; Duc, Pierre-Alain; Durrell, Patrick; Gwyn, Stephen; McConnacchie, Alan W.; Boselli, Alessandro; Courteau, Stéphane; Emsellem, Eric; Mei, Simona; Peng, Eric; Puzia, Thomas H.; Roediger, Joel; Simard, Luc; Boyer, Fred; Santos, Matthew

2016-03-01

We investigate the intrinsic shapes of low-luminosity galaxies in the central 300 kpc of the Virgo Cluster using deep imaging obtained as part of the Next Generation Virgo Cluster Survey (NGVS). We build a sample of nearly 300 red-sequence cluster members in the yet-unexplored -14 families of triaxial models with normally distributed intrinsic ellipticities, E = 1 - C/A, and triaxialities, T = (A2 - B2)/(A2 - C2). We develop a Bayesian framework to explore the posterior distribution of the model parameters, which allows us to work directly on discrete data, and to account for individual, surface-brightness-dependent axis ratio uncertainties. For this population we infer a mean intrinsic ellipticity \\bar{E} = {0.43}-0.02+0.02 and a mean triaxiality \\bar{T} = {0.16}-0.06+0.07. This implies that faint Virgo galaxies are best described as a family of thick, nearly oblate spheroids with mean intrinsic axis ratios 1:0.94:0.57. The core of Virgo lacks highly elongated low-luminosity galaxies, with 95% of the population having q > 0.45. We additionally attempt a study of the intrinsic shapes of Local Group (LG) satellites of similar luminosities. For the LG population we infer a slightly larger mean intrinsic ellipticity \\bar{E} = {0.51}-0.06+0.07, and the paucity of objects with round apparent shapes translates into more triaxial mean shapes, 1:0.76:0.49. Numerical studies that follow the tidal evolution of satellites within LG-sized halos are in good agreement with the inferred shape distributions, but the mismatch for faint galaxies in Virgo highlights the need for more adequate simulations of this population in the cluster environment. We finally compare the intrinsic shapes of NGVS low-mass galaxies with samples of more massive quiescent systems, and with field, star-forming galaxies of similar luminosities. We find that the intrinsic flattening in this low-luminosity regime is almost independent of the environment in which the galaxy resides, but there is a hint

Chemical Abundances of Red Giant Branch Stars in the Globular Clusters NGC 6333 and NGC 6366

Science.gov (United States)

Johnson, Christian I.; Rich, R. M.; Pilachowski, C. A.; Kunder, A. M.

2013-01-01

We present chemical abundances and radial velocities for >20 red giant branch (RGB) stars in the Galactic globular clusters NGC 6333 ([Fe/H]≈-1.8) and NGC 6366 ([Fe/H]≈-0.6). The results are based on moderate resolution (R=18,000), high signal-to-noise ratio (>100) spectra obtained with the Hydra multifiber positioner and bench spectrograph on the WIYN 3.5m telescope at Kitt Peak National Observatory. Both objects are likely associated with the Galactic bulge globular cluster system, and we therefore compare the cluster abundance patterns with those of nearby bulge field stars. Additionally, we investigate differences in the O-Na anticorrelation and neutron-capture element dispersion between the two clusters, and compare their abundance patterns with those of similar metallicity halo globular clusters. This material is based upon work supported by the National Science Foundation under award No. AST-1003201 to C.I.J. C.A.P. gratefully acknowledges support from the Daniel Kirkwood Research Fund at Indiana University. R.M.R. acknowledges support from NSF grant AST-0709479 and AST-121120995.

COMBINED EFFECTS OF BINARIES AND STELLAR ROTATION ON THE COLOR-MAGNITUDE DIAGRAMS OF INTERMEDIATE-AGE STAR CLUSTERS

International Nuclear Information System (INIS)

Li Zhongmu; Mao Caiyan; Chen Li; Zhang Qian

2012-01-01

About 70% of intermediate-age star clusters in the Large Magellanic Clouds have been confirmed to have broad main sequence, multiple or extended turnoffs, and dual red giant clumps. The observed result seems to be at odds with the classical idea that such clusters are simple stellar populations. Although many models have been used to explain the results via factors such as prolonged star formation history, metallicity spread, differential reddening, selection effect, observational uncertainty, stellar rotation, and binary interaction, the reason for the special color-magnitude diagrams is still uncertain. We revisit this question via the combination of stellar rotation and binary effects. As a result, it shows 'golf club' color-magnitude diagrams with broad or multiple turnoffs, dual red clumps, blue stragglers, red stragglers, and extended main sequences. Because both binaries and massive rotators are common, our result suggests that most color-magnitude diagrams, including extended turnoff or multiple turnoffs, can be explained using simple stellar populations including both binary and stellar rotation effects, or composite populations with two components.

Survey of microsatellite clustering in eight fully sequenced species sheds light on the origin of compound microsatellites

Directory of Open Access Journals (Sweden)

Lelley Tamas

2008-12-01

Full Text Available Abstract Background Compound microsatellites are a special variation of microsatellites in which two or more individual microsatellites are found directly adjacent to each other. Until now, such composite microsatellites have not been investigated in a comprehensive manner. Results Our in silico survey of microsatellite clustering in genomes of Homo sapiens, Maccaca mulatta, Mus musculus, Rattus norvegicus, Ornithorhynchus anatinus, Gallus gallus, Danio rerio and Drosophila melanogaster revealed an unexpected high abundance of compound microsatellites. About 4 – 25% of all microsatellites could be categorized as compound microsatellites. Compound microsatellites are approximately 15 times more frequent than expected under the assumption of a random distribution of microsatellites. Interestingly, microsatellites do not only tend to cluster but the adjacent repeat types of compound microsatellites have very similar motifs: in most cases (>90% these motifs differ only by a single mutation (base substitution or indel. We propose that the majority of the compound microsatellites originates by duplication of imperfections in a microsatellite tract. This process occurs mostly at the end of a microsatellite, leading to a new repeat type and a potential microsatellite repeat track. Conclusion Our findings suggest a more dynamic picture of microsatellite evolution than previously believed. Imperfections within microsatellites might not only cause the "death" of microsatellites they might also result in their "birth".

Choosing a Cluster Sampling Design for Lot Quality Assurance Sampling Surveys

OpenAIRE

Hund, Lauren; Bedrick, Edward J.; Pagano, Marcello

2015-01-01

Lot quality assurance sampling (LQAS) surveys are commonly used for monitoring and evaluation in resource-limited settings. Recently several methods have been proposed to combine LQAS with cluster sampling for more timely and cost-effective data collection. For some of these methods, the standard binomial model can be used for constructing decision rules as the clustering can be ignored. For other designs, considered here, clustering is accommodated in the design phase. In this paper, we comp...

The red deer Cervus elaphus genome CerEla1.0: sequencing, annotating, genes, and chromosomes.

Science.gov (United States)

Bana, Nóra Á; Nyiri, Anna; Nagy, János; Frank, Krisztián; Nagy, Tibor; Stéger, Viktor; Schiller, Mátyás; Lakatos, Péter; Sugár, László; Horn, Péter; Barta, Endre; Orosz, László

2018-01-02

We present here the de novo genome assembly CerEla1.0 for the red deer, Cervus elaphus, an emblematic member of the natural megafauna of the Northern Hemisphere. Humans spread the species in the South. Today, the red deer is also a farm-bred animal and is becoming a model animal in biomedical and population studies. Stag DNA was sequenced at 74× coverage by Illumina technology. The ALLPATHS-LG assembly of the reads resulted in 34.7 × 10 3 scaffolds, 26.1 × 10 3 of which were utilized in Cer.Ela1.0. The assembly spans 3.4 Gbp. For building the red deer pseudochromosomes, a pre-established genetic map was used for main anchor points. A nearly complete co-linearity was found between the mapmarker sequences of the deer genetic map and the order and orientation of the orthologous sequences in the syntenic bovine regions. Syntenies were also conserved at the in-scaffold level. The cM distances corresponded to 1.34 Mbp uniformly along the deer genome. Chromosomal rearrangements between deer and cattle were demonstrated. 2.8 × 10 6 SNPs, 365 × 10 3 indels and 19368 protein-coding genes were identified in CerEla1.0, along with positions for centromerons. CerEla1.0 demonstrates the utilization of dual references, i.e., when a target genome (here C. elaphus) already has a pre-established genetic map, and is combined with the well-established whole genome sequence of a closely related species (here Bos taurus). Genome-wide association studies (GWAS) that CerEla1.0 (NCBI, MKHE00000000) could serve for are discussed.

Evolution of low-mass stars in the alpha persei cluster

International Nuclear Information System (INIS)

Stauffer, J.R.; Hartmann, L.W.; Burnham, J.N.; Jones, B.F.

1985-01-01

We present a photometric and spectroscopic study of low-mass members of the α Persei cluster. Now relative proper motions have been obtained for 4000 stars in a 1X2 x 1X2 region of the α Persei open cluster. The survey extends to Vroughly-equal16.5 mag, much fainter than the previous proper motion surveys. Optical photometry and high-dispersion spectroscopy of the possible cluster members from our survey, as well as a set of 10th to 12th magnitude stars from previous surveys, have also been obtained. The new photometry shows an apparent pre-main sequence (PMS), but we cannot yet accurately determine the PMS turn-on point. The faint stars in the cluster have positions in a V versus V-I diagram that are roughly in accord with the 5 x 10 7 yr isochrone derived by VandenBerg et al. In agreement with previous results for the Pleiades cluster, some of the late-type α Persei members are photometric variables, with periods of 1 day or less. Light curves and estimated periods are presented for six of the G and K dwarf members of the cluster. We attribute the periodic light variations to spots on the surfaces of these stars, which are carried around the visible hemisphere by rapid rotation. The photometric periods are consistent with rotational broadening measurements when available. Projected rotational velocities derived from the echelle spectra indicate that nearly 50% of the stars observed that are later than G2 have 25 km s -1 -1 . The large rotational velocities among low-mass stars in young clusters are ascribed to spin-up during contraction to the main sequence

Automated detection of very Low Surface Brightness galaxies in the Virgo Cluster

Science.gov (United States)

Prole, D. J.; Davies, J. I.; Keenan, O. C.; Davies, L. J. M.

2018-04-01

We report the automatic detection of a new sample of very low surface brightness (LSB) galaxies, likely members of the Virgo cluster. We introduce our new software, DeepScan, that has been designed specifically to detect extended LSB features automatically using the DBSCAN algorithm. We demonstrate the technique by applying it over a 5 degree2 portion of the Next-Generation Virgo Survey (NGVS) data to reveal 53 low surface brightness galaxies that are candidate cluster members based on their sizes and colours. 30 of these sources are new detections despite the region being searched specifically for LSB galaxies previously. Our final sample contains galaxies with 26.0 ≤ ⟨μe⟩ ≤ 28.5 and 19 ≤ mg ≤ 21, making them some of the faintest known in Virgo. The majority of them have colours consistent with the red sequence, and have a mean stellar mass of 106.3 ± 0.5M⊙ assuming cluster membership. After using ProFit to fit Sérsic profiles to our detections, none of the new sources have effective radii larger than 1.5 Kpc and do not meet the criteria for ultra-diffuse galaxy (UDG) classification, so we classify them as ultra-faint dwarfs.

X-ray and optical substructures of the DAFT/FADA survey clusters

Science.gov (United States)

Guennou, L.; Durret, F.; Adami, C.; Lima Neto, G. B.

2013-04-01

We have undertaken the DAFT/FADA survey with the double aim of setting constraints on dark energy based on weak lensing tomography and of obtaining homogeneous and high quality data for a sample of 91 massive clusters in the redshift range 0.4-0.9 for which there were HST archive data. We have analysed the XMM-Newton data available for 42 of these clusters to derive their X-ray temperatures and luminosities and search for substructures. Out of these, a spatial analysis was possible for 30 clusters, but only 23 had deep enough X-ray data for a really robust analysis. This study was coupled with a dynamical analysis for the 26 clusters having at least 30 spectroscopic galaxy redshifts in the cluster range. Altogether, the X-ray sample of 23 clusters and the optical sample of 26 clusters have 14 clusters in common. We present preliminary results on the coupled X-ray and dynamical analyses of these 14 clusters.

An unexpected detection of bifurcated blue straggler sequences in the young globular cluster NGC 2173

OpenAIRE

Li, Chengyuan; Deng, Licai; de Grijs, Richard; Jiang, Dengkai; Xin, Yu

2018-01-01

Bifurcated patterns of blue straggler stars in their color--magnitude diagrams have atracted significant attention. This type of special (but rare) pattern of two distinct blue straggler sequences is commonly interpreted as evidence of cluster core-collapse-driven stellar collisions as an efficient formation mechanism. Here, we report the detection of a bifurcated blue straggler distribution in a young Large MagellanicCloud cluster, NGC 2173. Because of the cluster's low central stellar numbe...

Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource.

Science.gov (United States)

Sharpton, Thomas J; Jospin, Guillaume; Wu, Dongying; Langille, Morgan G I; Pollard, Katherine S; Eisen, Jonathan A

2012-10-13

New computational resources are needed to manage the increasing volume of biological data from genome sequencing projects. One fundamental challenge is the ability to maintain a complete and current catalog of protein diversity. We developed a new approach for the identification of protein families that focuses on the rapid discovery of homologous protein sequences. We implemented fully automated and high-throughput procedures to de novo cluster proteins into families based upon global alignment similarity. Our approach employs an iterative clustering strategy in which homologs of known families are sifted out of the search for new families. The resulting reduction in computational complexity enables us to rapidly identify novel protein families found in new genomes and to perform efficient, automated updates that keep pace with genome sequencing. We refer to protein families identified through this approach as "Sifting Families," or SFams. Our analysis of ~10.5 million protein sequences from 2,928 genomes identified 436,360 SFams, many of which are not represented in other protein family databases. We validated the quality of SFam clustering through statistical as well as network topology-based analyses. We describe the rapid identification of SFams and demonstrate how they can be used to annotate genomes and metagenomes. The SFam database catalogs protein-family quality metrics, multiple sequence alignments, hidden Markov models, and phylogenetic trees. Our source code and database are publicly available and will be subject to frequent updates (http://edhar.genomecenter.ucdavis.edu/sifting_families/).

Don't spin the pen: two alternative methods for second-stage sampling in urban cluster surveys

Directory of Open Access Journals (Sweden)

Rose Angela MC

2007-06-01

Full Text Available Abstract In two-stage cluster surveys, the traditional method used in second-stage sampling (in which the first household in a cluster is selected is time-consuming and may result in biased estimates of the indicator of interest. Firstly, a random direction from the center of the cluster is selected, usually by spinning a pen. The houses along that direction are then counted out to the boundary of the cluster, and one is then selected at random to be the first household surveyed. This process favors households towards the center of the cluster, but it could easily be improved. During a recent meningitis vaccination coverage survey in Maradi, Niger, we compared this method of first household selection to two alternatives in urban zones: 1 using a superimposed grid on the map of the cluster area and randomly selecting an intersection; and 2 drawing the perimeter of the cluster area using a Global Positioning System (GPS and randomly selecting one point within the perimeter. Although we only compared a limited number of clusters using each method, we found the sampling grid method to be the fastest and easiest for field survey teams, although it does require a map of the area. Selecting a random GPS point was also found to be a good method, once adequate training can be provided. Spinning the pen and counting households to the boundary was the most complicated and time-consuming. The two methods tested here represent simpler, quicker and potentially more robust alternatives to spinning the pen for cluster surveys in urban areas. However, in rural areas, these alternatives would favor initial household selection from lower density (or even potentially empty areas. Bearing in mind these limitations, as well as available resources and feasibility, investigators should choose the most appropriate method for their particular survey context.

Draft genome sequence of Streptomyces coelicoflavus ZG0656 reveals the putative biosynthetic gene cluster of acarviostatin family α-amylase inhibitors.

Science.gov (United States)

Guo, X; Geng, P; Bai, F; Bai, G; Sun, T; Li, X; Shi, L; Zhong, Q

2012-08-01

The aims of this study are to obtain the draft genome sequence of Streptomyces coelicoflavus ZG0656, which produces novel acarviostatin family α-amylase inhibitors, and then to reveal the putative acarviostatin-related gene cluster and the biosynthetic pathway. The draft genome sequence of S. coelicoflavus ZG0656 was generated using a shotgun approach employing a combination of 454 and Solexa sequencing technologies. Genome analysis revealed a putative gene cluster for acarviostatin biosynthesis, termed sct-cluster. The cluster contains 13 acarviostatin synthetic genes, six transporter genes, four starch degrading or transglycosylation enzyme genes and two regulator genes. On the basis of bioinformatic analysis, we proposed a putative biosynthetic pathway of acarviostatins. The intracellular steps produce a structural core, acarviostatin I00-7-P, and the extracellular assemblies lead to diverse acarviostatin end products. The draft genome sequence of S. coelicoflavus ZG0656 revealed the putative biosynthetic gene cluster of acarviostatins and a putative pathway of acarviostatin production. To our knowledge, S. coelicoflavus ZG0656 is the first strain in this species for which a genome sequence has been reported. The analysis of sct-cluster provided important insights into the biosynthesis of acarviostatins. This work will be a platform for producing novel variants and yield improvement. © 2012 The Authors. Letters in Applied Microbiology © 2012 The Society for Applied Microbiology.

Innovation in Industrial Clusters: a Survey of Footwear Companies in Brazil

Directory of Open Access Journals (Sweden)

Hélcio Martins Tristão

2013-09-01

Full Text Available The aim of this study is to characterize the relationships in innovation and business clustering processes in the productive chain of small and medium enterprises (SME of Brazil. The object of study are SMEs the local procuctive cluster of the shoes in Franca, State of São Paulo. The conceptual model developed is based on the following constructs: vertical integration, innovation and characteristics of the cluster, and it is focused on identifying the agents that act predominantly in product innovation processes in the cluster. A survey was conducted. It was found that there is cooperation between the companies in the productive arrangement studied, and that shoe manufacturers are those who, predominantly, stimulate innovation within the cluster.

Assessing the utility of eDNA as a tool to survey reef-fish communities in the Red Sea

KAUST Repository

DiBattista, Joseph; Coker, Darren James; Sinclair-Taylor, Tane; Stat, Michael; Berumen, Michael L.; Bunce, Michael

2017-01-01

Relatively small volumes of water may contain sufficient environmental DNA (eDNA) to detect target aquatic organisms via genetic sequencing. We therefore assessed the utility of eDNA to document the diversity of coral reef fishes in the central Red Sea. DNA from seawater samples was extracted, amplified using fish-specific 16S mitochondrial DNA primers, and sequenced using a metabarcoding workflow. DNA sequences were assigned to taxa using available genetic repositories or custom genetic databases generated from reference fishes. Our approach revealed a diversity of conspicuous, cryptobenthic, and commercially relevant reef fish at the genus level, with select genera in the family Labridae over-represented. Our approach, however, failed to capture a significant fraction of the fish fauna known to inhabit the Red Sea, which we attribute to limited spatial sampling, amplification stochasticity, and an apparent lack of sequencing depth. Given an increase in fish species descriptions, completeness of taxonomic checklists, and improvement in species-level assignment with custom genetic databases as shown here, we suggest that the Red Sea region may be ideal for further testing of the eDNA approach.

Assessing the utility of eDNA as a tool to survey reef-fish communities in the Red Sea

Science.gov (United States)

DiBattista, Joseph D.; Coker, Darren J.; Sinclair-Taylor, Tane H.; Stat, Michael; Berumen, Michael L.; Bunce, Michael

2017-12-01

Relatively small volumes of water may contain sufficient environmental DNA (eDNA) to detect target aquatic organisms via genetic sequencing. We therefore assessed the utility of eDNA to document the diversity of coral reef fishes in the central Red Sea. DNA from seawater samples was extracted, amplified using fish-specific 16S mitochondrial DNA primers, and sequenced using a metabarcoding workflow. DNA sequences were assigned to taxa using available genetic repositories or custom genetic databases generated from reference fishes. Our approach revealed a diversity of conspicuous, cryptobenthic, and commercially relevant reef fish at the genus level, with select genera in the family Labridae over-represented. Our approach, however, failed to capture a significant fraction of the fish fauna known to inhabit the Red Sea, which we attribute to limited spatial sampling, amplification stochasticity, and an apparent lack of sequencing depth. Given an increase in fish species descriptions, completeness of taxonomic checklists, and improvement in species-level assignment with custom genetic databases as shown here, we suggest that the Red Sea region may be ideal for further testing of the eDNA approach.

Assessing the utility of eDNA as a tool to survey reef-fish communities in the Red Sea

KAUST Repository

DiBattista, Joseph D.

2017-08-23

Relatively small volumes of water may contain sufficient environmental DNA (eDNA) to detect target aquatic organisms via genetic sequencing. We therefore assessed the utility of eDNA to document the diversity of coral reef fishes in the central Red Sea. DNA from seawater samples was extracted, amplified using fish-specific 16S mitochondrial DNA primers, and sequenced using a metabarcoding workflow. DNA sequences were assigned to taxa using available genetic repositories or custom genetic databases generated from reference fishes. Our approach revealed a diversity of conspicuous, cryptobenthic, and commercially relevant reef fish at the genus level, with select genera in the family Labridae over-represented. Our approach, however, failed to capture a significant fraction of the fish fauna known to inhabit the Red Sea, which we attribute to limited spatial sampling, amplification stochasticity, and an apparent lack of sequencing depth. Given an increase in fish species descriptions, completeness of taxonomic checklists, and improvement in species-level assignment with custom genetic databases as shown here, we suggest that the Red Sea region may be ideal for further testing of the eDNA approach.

EXPLORING ANTICORRELATIONS AND LIGHT ELEMENT VARIATIONS IN NORTHERN GLOBULAR CLUSTERS OBSERVED BY THE APOGEE SURVEY

Energy Technology Data Exchange (ETDEWEB)

Mészáros, Szabolcs [ELTE Gothard Astrophysical Observatory, H-9704 Szombathely, Szent Imre Herceg st. 112 (Hungary); Martell, Sarah L. [Department of Astrophysics, School of Physics, University of New South Wales, Sydney, NSW 2052 (Australia); Shetrone, Matthew [University of Texas at Austin, McDonald Observatory, Fort Davis, TX 79734 (United States); Lucatello, Sara [INAF-Osservatorio Astronomico di Padova, vicolo dell Osservatorio 5, I-35122 Padova (Italy); Troup, Nicholas W.; Pérez, Ana E. García; Majewski, Steven R. [Department of Astronomy, University of Virginia, Charlottesville, VA 22904-4325 (United States); Bovy, Jo [Institute for Advanced Study, Einstein Drive, Princeton, NJ 08540 (United States); Cunha, Katia [University of Arizona, Tucson, AZ 85719 (United States); García-Hernández, Domingo A.; Prieto, Carlos Allende [Instituto de Astrofísica de Canarias (IAC), E-38200 La Laguna, Tenerife (Spain); Overbeek, Jamie C. [Department of Astronomy, Indiana University, Bloomington, IN 47405 (United States); Beers, Timothy C. [Department of Physics and JINA Center for the Evolution of the Elements, University of Notre Dame, Notre Dame, IN 46556 (United States); Frinchaboy, Peter M. [Texas Christian University, Fort Worth, TX 76129 (United States); Hearty, Fred R.; Schneider, Donald P. [Department of Astronomy and Astrophysics, The Pennsylvania State University, University Park, PA 16802 (United States); Holtzman, Jon [New Mexico State University, Las Cruces, NM 88003 (United States); Nidever, David L. [Department of Astronomy, University of Michigan, Ann Arbor, MI 48109 (United States); Schiavon, Ricardo P. [Astrophysics Research Institute, IC2, Liverpool Science Park, Liverpool John Moores University, 146 Brownlow Hill, Liverpool, L3 5RF (United Kingdom); and others

2015-05-15

We investigate the light-element behavior of red giant stars in northern globular clusters (GCs) observed by the SDSS-III Apache Point Observatory Galactic Evolution Experiment. We derive abundances of 9 elements (Fe, C, N, O, Mg, Al, Si, Ca, and Ti) for 428 red giant stars in 10 GCs. The intrinsic abundance range relative to measurement errors is examined, and the well-known C–N and Mg–Al anticorrelations are explored using an extreme-deconvolution code for the first time in a consistent way. We find that Mg and Al drive the population membership in most clusters, except in M107 and M71, the two most metal-rich clusters in our study, where the grouping is most sensitive to N. We also find a diversity in the abundance distributions, with some clusters exhibiting clear abundance bimodalities (for example M3 and M53) while others show extended distributions. The spread of Al abundances increases significantly as cluster average metallicity decreases as previously found by other works, which we take as evidence that low metallicity, intermediate mass AGB polluters were more common in the more metal-poor clusters. The statistically significant correlation of [Al/Fe] with [Si/Fe] in M15 suggests that {sup 28}Si leakage has occurred in this cluster. We also present C, N, and O abundances for stars cooler than 4500 K and examine the behavior of A(C+N+O) in each cluster as a function of temperature and [Al/Fe]. The scatter of A(C+N+O) is close to its estimated uncertainty in all clusters and independent of stellar temperature. A(C+N+O) exhibits small correlations and anticorrelations with [Al/Fe] in M3 and M13, but we cannot be certain about these relations given the size of our abundance uncertainties. Star-to-star variations of α-element (Si, Ca, Ti) abundances are comparable to our estimated errors in all clusters.

Fish market surveys indicate unsustainable elasmobranch fisheries in the Saudi Arabian Red Sea

KAUST Repository

Spaet, Julia L.Y.

2015-01-01

Elasmobranch populations worldwide are severely threatened due to overexploited and unregulated fisheries. Despite the fact that sharks and rays are captured in fisheries operating along the Red Sea coast of the Kingdom of Saudi Arabia (KSA), information on any aspects of these fisheries are very limited. Here we document the structure, composition and biological characteristics of eastern Red Sea elasmobranch fisheries based on genetic identification and market survey data over an intensive two-year sampling period at the biggest Red Sea fish market in the KSA (Jeddah). Market surveys conducted two times per month between 2011 and 2013 revealed that 24 previously confirmed elasmobranch species for the Red Sea were landed by fishers and offered for sale. Genetic identification revealed two potentially undescribed guitarfish species as well as four batoid species not formerly reported from the Red Sea. Five coastal carcharhinid species dominated the landings-. Carcharhinus sorrah, C. amblyrhynchos, C. falciformis, C. limbatus, Rhizoprionodon acutus, together comprising 73% numerically of the total catch. Targeted shark fisheries reportedly exist in shark nursery areas. Most elasmobranchs outside of these areas were reportedly landed as bycatch. Most strikingly, the large majority of landed elasmobranchs were immature males or females below their reported size of sexual maturity, which suggests potential for both growth and recruitment overfishing and emphasizes the urgent need to implement region-specific management and conservation strategies to avoid the loss of these critical predators.

Wide-Field Lensing Mass Maps from Dark Energy Survey Science Verification Data.

Science.gov (United States)

Chang, C; Vikram, V; Jain, B; Bacon, D; Amara, A; Becker, M R; Bernstein, G; Bonnett, C; Bridle, S; Brout, D; Busha, M; Frieman, J; Gaztanaga, E; Hartley, W; Jarvis, M; Kacprzak, T; Kovács, A; Lahav, O; Lin, H; Melchior, P; Peiris, H; Rozo, E; Rykoff, E; Sánchez, C; Sheldon, E; Troxel, M A; Wechsler, R; Zuntz, J; Abbott, T; Abdalla, F B; Allam, S; Annis, J; Bauer, A H; Benoit-Lévy, A; Brooks, D; Buckley-Geer, E; Burke, D L; Capozzi, D; Carnero Rosell, A; Carrasco Kind, M; Castander, F J; Crocce, M; D'Andrea, C B; Desai, S; Diehl, H T; Dietrich, J P; Doel, P; Eifler, T F; Evrard, A E; Fausti Neto, A; Flaugher, B; Fosalba, P; Gruen, D; Gruendl, R A; Gutierrez, G; Honscheid, K; James, D; Kent, S; Kuehn, K; Kuropatkin, N; Maia, M A G; March, M; Martini, P; Merritt, K W; Miller, C J; Miquel, R; Neilsen, E; Nichol, R C; Ogando, R; Plazas, A A; Romer, A K; Roodman, A; Sako, M; Sanchez, E; Sevilla, I; Smith, R C; Soares-Santos, M; Sobreira, F; Suchyta, E; Tarle, G; Thaler, J; Thomas, D; Tucker, D; Walker, A R

2015-07-31

We present a mass map reconstructed from weak gravitational lensing shear measurements over 139  deg2 from the Dark Energy Survey science verification data. The mass map probes both luminous and dark matter, thus providing a tool for studying cosmology. We find good agreement between the mass map and the distribution of massive galaxy clusters identified using a red-sequence cluster finder. Potential candidates for superclusters and voids are identified using these maps. We measure the cross-correlation between the mass map and a magnitude-limited foreground galaxy sample and find a detection at the 6.8σ level with 20 arc min smoothing. These measurements are consistent with simulated galaxy catalogs based on N-body simulations from a cold dark matter model with a cosmological constant. This suggests low systematics uncertainties in the map. We summarize our key findings in this Letter; the detailed methodology and tests for systematics are presented in a companion paper.

Red giants and yellow stragglers in the young open cluster NGC 2447

Science.gov (United States)

da Silveira, M. D.; Pereira, C. B.; Drake, N. A.

2018-06-01

In this work we analysed, using high-resolution spectroscopy, a sample of 12 single and 4 spectroscopic binary stars of the open cluster NGC 2447. For the single stars, we obtained atmospheric parameters and chemical abundances of Li, C, N, O, Na, Mg, Al, Ca, Si, Ti, Ni, Cr, Y, Zr, La, Ce, Nd, Eu. Rotational velocities were obtained for all the stars. The abundances of the light elements and Eu and the rotational velocities were derived using spectral synthesis technique. We obtained a mean metallicity of [Fe/H] = -0.17 ± 0.05. We found that the abundances of all elements are similar to field giants and/or giants of open clusters, even for the s-process elements, which are enhanced as in other young open clusters. We show that the spectroscopic binaries NGC 2447-26, 38, and 42 are yellow-straggler stars, of which the primary is a giant star and the secondary a main-sequence A-type star.

VizieR Online Data Catalog: Stellar mass of brightest cluster galaxies (Bellstedt+, 2016)

Science.gov (United States)

Bellstedt, S.; Lidman, C.; Muzzin, A.; Franx, M.; Guatelli, S.; Hill, A. R.; Hoekstra, H.; Kurinsky, N.; Labbe, I.; Marchesini, D.; Marsan, Z. C.; Safavi-Naeini, M.; Sifon, C.; Stefanon, M.; van de Sande, J.; van Dokkum, P.; Weigel, C.

2017-11-01

We utilize a sample of 98 newly imaged galaxy clusters from the RELICS (REd Lens Infrared Cluster Survey) survey within this study. The data were collected during six observing runs on three instruments over a period spanning from 2013 October to 2015 March. The instruments utilized were the SofI2 camera on the New Technology Telescope at the European Southern Observatory (ESO) La Silla Observatory in Chile, WHIRC3 on the WIYN telescope at the Kitt Peak National Observatory and LIRIS4 on the William Herschel Telescope (WHT) in La Palma, Spain. (2 data files).

A SOM clustering pattern sequence-based next symbol prediction method for day-ahead direct electricity load and price forecasting

International Nuclear Information System (INIS)

Jin, Cheng Hao; Pok, Gouchol; Lee, Yongmi; Park, Hyun-Woo; Kim, Kwang Deuk; Yun, Unil; Ryu, Keun Ho

2015-01-01

Highlights: • A novel pattern sequence-based direct time series forecasting method was proposed. • Due to the use of SOM’s topology preserving property, only SOM can be applied. • SCPSNSP only deals with the cluster patterns not each specific time series value. • SCPSNSP performs better than recently developed forecasting algorithms. - Abstract: In this paper, we propose a new day-ahead direct time series forecasting method for competitive electricity markets based on clustering and next symbol prediction. In the clustering step, pattern sequence and their topology relations are obtained from self organizing map time series clustering. In the next symbol prediction step, with each cluster label in the pattern sequence represented as a pair of its topologically identical coordinates, artificial neural network is used to predict the topological coordinates of next day by training the relationship between previous daily pattern sequence and its next day pattern. According to the obtained topology relations, the nearest nonzero hits pattern is assigned to next day so that the whole time series values can be directly forecasted from the assigned cluster pattern. The proposed method was evaluated on Spanish, Australian and New York electricity markets and compared with PSF and some of the most recently published forecasting methods. Experimental results show that the proposed method outperforms the best forecasting methods at least 3.64%

Metallicity Variations in the Type II Globular Cluster NGC 6934

Science.gov (United States)

Marino, A. F.; Yong, D.; Milone, A. P.; Piotto, G.; Lundquist, M.; Bedin, L. R.; Chené, A.-N.; Da Costa, G.; Asplund, M.; Jerjen, H.

2018-06-01

The Hubble Space Telescope photometric survey of Galactic globular clusters (GCs) has revealed a peculiar “chromosome map” for NGC 6934. In addition to a typical sequence, similar to that observed in Type I GCs, NGC 6934 displays additional stars on the red side, analogous to the anomalous Type II GCs, as defined in our previous work. We present a chemical abundance analysis of four red giants in this GC. Two stars are located on the chromosome map sequence common to all GCs, and another two lie on the additional sequence. We find (i) star-to-star Fe variations, with the two anomalous stars being enriched by ∼0.2 dex. Because of our small-size sample, this difference is at the ∼2.5σ level. (ii) There is no evidence for variations in the slow neutron-capture abundances over Fe, at odds with what is often observed in anomalous Type II GCs, e.g., M 22 and ω Centauri (iii) no large variations in light elements C, O, and Na, compatible with locations of the targets on the lower part of the chromosome map where such variations are not expected. Since the analyzed stars are homogeneous in light elements, the only way to reproduce the photometric splits on the sub-giant (SGB) and the red giant (RGB) branches is to assume that red RGB/faint SGB stars are enhanced in [Fe/H] by ∼0.2. This fact corroborates the spectroscopic evidence of a metallicity variation in NGC 6934. The observed chemical pattern resembles only partially the other Type II GCs, suggesting that NGC 6934 might belong either to a third class of GCs, or be a link between normal Type I and anomalous Type II GCs. Based on observations with the NASA/ESA Hubble Space Telescope, obtained at the Space Telescope Science Institute, which is operated by AURA, Inc., under NASA contract NAS 5-26555. This paper includes data gathered with the 6.5 m Magellan Telescopes located at Las Campanas Observatory, Chile, and Gemini Telescope at Canada–France–Hawaii Telescope.

Activation and clustering of a Plasmodium falciparum var gene are affected by subtelomeric sequences.

Science.gov (United States)

Duffy, Michael F; Tang, Jingyi; Sumardy, Fransisca; Nguyen, Hanh H T; Selvarajah, Shamista A; Josling, Gabrielle A; Day, Karen P; Petter, Michaela; Brown, Graham V

2017-01-01

The Plasmodium falciparum var multigene family encodes the cytoadhesive, variant antigen PfEMP1. P. falciparum antigenic variation and cytoadhesion specificity are controlled by epigenetic switching between the single, or few, simultaneously expressed var genes. Most var genes are maintained in perinuclear clusters of heterochromatic telomeres. The active var gene(s) occupy a single, perinuclear var expression site. It is unresolved whether the var expression site forms in situ at a telomeric cluster or whether it is an extant compartment to which single chromosomes travel, thus controlling var switching. Here we show that transcription of a var gene did not require decreased colocalisation with clusters of telomeres, supporting var expression site formation in situ. However following recombination within adjacent subtelomeric sequences, the same var gene was persistently activated and did colocalise less with telomeric clusters. Thus, participation in stable, heterochromatic, telomere clusters and var switching are independent but are both affected by subtelomeric sequences. The var expression site colocalised with the euchromatic mark H3K27ac to a greater extent than it did with heterochromatic H3K9me3. H3K27ac was enriched within the active var gene promoter even when the var gene was transiently repressed in mature parasites and thus H3K27ac may contribute to var gene epigenetic memory. © 2016 Federation of European Biochemical Societies.

Optimizing measurements of cluster velocities and temperatures for CCAT-prime and future surveys

Science.gov (United States)

Mittal, Avirukt; de Bernardis, Francesco; Niemack, Michael D.

2018-02-01

Galaxy cluster velocity correlations and mass distributions are sensitive probes of cosmology and the growth of structure. Upcoming microwave surveys will enable extraction of velocities and temperatures from many individual clusters for the first time. We forecast constraints on peculiar velocities, electron temperatures, and optical depths of galaxy clusters obtainable with upcoming multi-frequency measurements of the kinematic, thermal, and relativistic Sunyaev-Zeldovich effects. The forecasted constraints are compared for different measurement configurations with frequency bands between 90 GHz and 1 THz, and for different survey strategies for the 6-meter CCAT-prime telescope. We study methods for improving cluster constraints by removing emission from dusty star forming galaxies, and by using X-ray temperature priors from eROSITA. Cluster constraints are forecast for several model cluster masses. A sensitivity optimization for seven frequency bands is presented for a CCAT-prime first light instrument and a next generation instrument that takes advantage of the large optical throughput of CCAT-prime. We find that CCAT-prime observations are expected to enable measurement and separation of the SZ effects to characterize the velocity, temperature, and optical depth of individual massive clusters (~1015 Msolar). Submillimeter measurements are shown to play an important role in separating these components from dusty galaxy contamination. Using a modular instrument configuration with similar optical throughput for each detector array, we develop a rule of thumb for the number of detector arrays desired at each frequency to optimize extraction of these signals. Our results are relevant for a future "Stage IV" cosmic microwave background survey, which could enable galaxy cluster measurements over a larger range of masses and redshifts than will be accessible by other experiments.

The Open Cluster Chemical Abundances and Mapping (OCCAM) Survey: Optical Extension for Neutron Capture Elements

Science.gov (United States)

Melendez, Matthew; O'Connell, Julia; Frinchaboy, Peter M.; Donor, John; Cunha, Katia M. L.; Shetrone, Matthew D.; Majewski, Steven R.; Zasowski, Gail; Pinsonneault, Marc H.; Roman-Lopes, Alexandre; Stassun, Keivan G.; APOGEE Team

2017-01-01

The Open Cluster Chemical Abundance & Mapping (OCCAM) survey is a systematic survey of Galactic open clusters using data primarily from the SDSS-III/APOGEE-1 survey. However, neutron capture elements are very limited in the IR region covered by APOGEE. In an effort to fully study detailed Galactic chemical evolution, we are conducting a high resolution (R~60,000) spectroscopic abundance analysis of neutron capture elements for OCCAM clusters in the optical regime to complement the APOGEE results. As part of this effort, we present Ba II, La II, Ce II and Eu II results for a few open clusters without previous abundance measurements using data obtained at McDonald Observatory with the 2.1m Otto Struve telescope and Sandiford Echelle Spectrograph.This work is supported by an NSF AAG grant AST-1311835.

Identification and characterization of earthquake clusters: a comparative analysis for selected sequences in Italy

Science.gov (United States)

Peresan, Antonella; Gentili, Stefania

2017-04-01

Identification and statistical characterization of seismic clusters may provide useful insights about the features of seismic energy release and their relation to physical properties of the crust within a given region. Moreover, a number of studies based on spatio-temporal analysis of main-shocks occurrence require preliminary declustering of the earthquake catalogs. Since various methods, relying on different physical/statistical assumptions, may lead to diverse classifications of earthquakes into main events and related events, we aim to investigate the classification differences among different declustering techniques. Accordingly, a formal selection and comparative analysis of earthquake clusters is carried out for the most relevant earthquakes in North-Eastern Italy, as reported in the local OGS-CRS bulletins, compiled at the National Institute of Oceanography and Experimental Geophysics since 1977. The comparison is then extended to selected earthquake sequences associated with a different seismotectonic setting, namely to events that occurred in the region struck by the recent Central Italy destructive earthquakes, making use of INGV data. Various techniques, ranging from classical space-time windows methods to ad hoc manual identification of aftershocks, are applied for detection of earthquake clusters. In particular, a statistical method based on nearest-neighbor distances of events in space-time-energy domain, is considered. Results from clusters identification by the nearest-neighbor method turn out quite robust with respect to the time span of the input catalogue, as well as to minimum magnitude cutoff. The identified clusters for the largest events reported in North-Eastern Italy since 1977 are well consistent with those reported in earlier studies, which were aimed at detailed manual aftershocks identification. The study shows that the data-driven approach, based on the nearest-neighbor distances, can be satisfactorily applied to decompose the seismic

Forest fragmentation and Red-cockaded Woodpecker population: an analysis at intermediate scale

Science.gov (United States)

D. Craig Rudolph; Richard N. Conner

1994-01-01

The Red-cockaded Woodpecker population on the Sam Houston National Forest in Texas was surveyed during 1988. The 128 active clusters present make this population one of the largest in existence. Pine stand ages varied considerably across the forest. Correlation analysis indicated that stand area in excess of 60 yr of age is positively correlated with measures of...

AGE DETERMINATION OF SIX INTERMEDIATE-AGE SMALL MAGELLANIC CLOUD STAR CLUSTERS WITH HST/ACS

International Nuclear Information System (INIS)

Glatt, Katharina; Kayser, Andrea; Grebel, Eva K.; Sabbi, Elena; Gallagher, John S. III; Harbeck, Daniel; Nota, Antonella; Sirianni, Marco; Clementini, Gisella; Tosi, Monica; Koch, Andreas; Da Costa, Gary

2008-01-01

We present a photometric analysis of the star clusters Lindsay 1, Kron 3, NGC 339, NGC 416, Lindsay 38, and NGC 419 in the Small Magellanic Cloud (SMC), observed with the Hubble Space Telescope Advanced Camera for Surveys (ACS) in the F555W and F814W filters. Our color-magnitude diagrams (CMDs) extend ∼3.5 mag deeper than the main-sequence turnoff points, deeper than any previous data. Cluster ages were derived using three different isochrone models: Padova, Teramo, and Dartmouth, which are all available in the ACS photometric system. Fitting observed ridgelines for each cluster, we provide a homogeneous and unique set of low-metallicity, single-age fiducial isochrones. The cluster CMDs are best approximated by the Dartmouth isochrones for all clusters, except for NGC 419 where the Padova isochrones provided the best fit. Using Dartmouth isochrones we derive ages of 7.5 ± 0.5 Gyr (Lindsay 1), 6.5 ± 0.5 Gyr (Kron 3), 6 ± 0.5 Gyr (NGC 339), 6 ± 0.5 Gyr (NGC 416), and 6.5 ± 0.5 Gyr (Lindsay 38). The CMD of NGC 419 shows several main-sequence turnoffs, which belong to the cluster and to the SMC field. We thus derive an age range of 1.2-1.6 Gyr for NGC 419. We confirm that the SMC contains several intermediate-age populous star clusters with ages unlike those of the Large Magellanic Cloud and the Milky Way. Interestingly, our intermediate-age star clusters have a metallicity spread of ∼0.6 dex, which demonstrates that the SMC does not have a smooth, monotonic age-metallicity relation. We find an indication for centrally-concentrated blue straggler star candidates in NGC 416, while these are not present for the other clusters. Using the red clump magnitudes, we find that the closest cluster, NGC 419 (∼50 kpc), and the farthest cluster, Lindsay 38 (∼67 kpc), have a relative distance of ∼17 kpc, which confirms the large depth of the SMC. The three oldest SMC clusters (NGC 121, Lindsay 1, and Kron 3) lie in the northwestern part of the SMC, while the youngest

Sifting through genomes with iterative-sequence clustering produces a large, phylogenetically diverse protein-family resource

Directory of Open Access Journals (Sweden)

Sharpton Thomas J

2012-10-01

Full Text Available Abstract Background New computational resources are needed to manage the increasing volume of biological data from genome sequencing projects. One fundamental challenge is the ability to maintain a complete and current catalog of protein diversity. We developed a new approach for the identification of protein families that focuses on the rapid discovery of homologous protein sequences. Results We implemented fully automated and high-throughput procedures to de novo cluster proteins into families based upon global alignment similarity. Our approach employs an iterative clustering strategy in which homologs of known families are sifted out of the search for new families. The resulting reduction in computational complexity enables us to rapidly identify novel protein families found in new genomes and to perform efficient, automated updates that keep pace with genome sequencing. We refer to protein families identified through this approach as “Sifting Families,” or SFams. Our analysis of ~10.5 million protein sequences from 2,928 genomes identified 436,360 SFams, many of which are not represented in other protein family databases. We validated the quality of SFam clustering through statistical as well as network topology–based analyses. Conclusions We describe the rapid identification of SFams and demonstrate how they can be used to annotate genomes and metagenomes. The SFam database catalogs protein-family quality metrics, multiple sequence alignments, hidden Markov models, and phylogenetic trees. Our source code and database are publicly available and will be subject to frequent updates (http://edhar.genomecenter.ucdavis.edu/sifting_families/.

The Hubble Space Telescope UV Legacy Survey of Galactic globular clusters - XIV. Multiple stellar populations within M 15 and their radial distribution

Science.gov (United States)

Nardiello, D.; Milone, A. P.; Piotto, G.; Anderson, J.; Bedin, L. R.; Bellini, A.; Cassisi, S.; Libralato, M.; Marino, A. F.

2018-06-01

In the context of the Hubble Space Telescope UV Survey of Galactic globular clusters (GCs), we derived high-precision, multi-band photometry to investigate the multiple stellar populations in the massive and metal-poor GC M 15. By creating for red-giant branch (RGB) stars of the cluster a `chromosome map', which is a pseudo two-colour diagram made with appropriate combination of F275W, F336W, F438W, and F814W magnitudes, we revealed colour spreads around two of the three already known stellar populations. These spreads cannot be produced by photometric errors alone and could hide the existence of (two) additional populations. This discovery increases the complexity of the multiple-population phenomenon in M 15. Our analysis shows that M 15 exhibits a faint sub-giant branch (SGB), which is also detected in colour-magnitude diagrams (CMDs) made with optical magnitudes only. This poorly populated SGB includes about 5 per cent of the total number of SGB stars and evolves into a red RGB in the mF336W versus mF336W - mF814W CMD, suggesting that M 15 belongs to the class of Type II GCs. We measured the relative number of stars in each population at various radial distances from the cluster centre, showing that all of these populations share the same radial distribution within statistic uncertainties. These new findings are discussed in the context of the formation and evolution scenarios of the multiple populations.

The cluster index of regularly varying sequences with applications to limit theory for functions of multivariate Markov chains

DEFF Research Database (Denmark)

Mikosch, Thomas Valentin; Wintenberger, Olivier

2014-01-01

We introduce the cluster index of a multivariate stationary sequence and characterize the index in terms of the spectral tail process. This index plays a major role in limit theory for partial sums of sequences. We illustrate the use of the cluster index by characterizing infinite variance stable...... limit distributions and precise large deviation results for sums of multivariate functions acting on a stationary Markov chain under a drift condition....

Simulation of old open clusters for UVIT on ASTROSAT

International Nuclear Information System (INIS)

Sindhu, N; Anu Radha, C; Annapurni, Subramaniam

2015-01-01

The Ultra Violet Imaging Telescope (UVIT) is one of the payloads on the first Indian multiwavelength satellite ASTROSAT, which is expected to be launched by the Indian Space Research Organisation (ISRO) in the year 2015. We have performed simulations of UV studies of old open clusters for the UVIT. The colour magnitude diagrams (CMDs) and spatial appearances have been created using 10 filters associated with the FUV channel (130–180 nm) and NUV channel (200–300 nm) that are available for observations on the UVIT, for the three old open clusters M67, NGC 188 and NGC 6791. The CMDs are simulated for different filter combinations, and they are used to identify the loci of various evolutionary sequences, white dwarfs, blue stragglers, red giants, subgiants, turn off stars and the main sequence of the clusters. The present work helps in identifying a potential area of study in the case of these three old open clusters by considering the availability of filters and the detection limits of the instrument. We also recommend filter combinations, which can be used to detect and study the above mentioned evolutionary stages. The simulations and the results presented here are essential for the optimal use of the UVIT for studies of old open clusters. (paper)

Global survey of star clusters in the Milky Way. VI. Age distribution and cluster formation history

Science.gov (United States)

Piskunov, A. E.; Just, A.; Kharchenko, N. V.; Berczik, P.; Scholz, R.-D.; Reffert, S.; Yen, S. X.

2018-06-01

Context. The all-sky Milky Way Star Clusters (MWSC) survey provides uniform and precise ages, along with other relevant parameters, for a wide variety of clusters in the extended solar neighbourhood. Aims: In this study we aim to construct the cluster age distribution, investigate its spatial variations, and discuss constraints on cluster formation scenarios of the Galactic disk during the last 5 Gyrs. Methods: Due to the spatial extent of the MWSC, we have considered spatial variations of the age distribution along galactocentric radius RG, and along Z-axis. For the analysis of the age distribution we used 2242 clusters, which all lie within roughly 2.5 kpc of the Sun. To connect the observed age distribution to the cluster formation history we built an analytical model based on simple assumptions on the cluster initial mass function and on the cluster mass-lifetime relation, fit it to the observations, and determined the parameters of the cluster formation law. Results: Comparison with the literature shows that earlier results strongly underestimated the number of evolved clusters with ages t ≳ 100 Myr. Recent studies based on all-sky catalogues agree better with our data, but still lack the oldest clusters with ages t ≳ 1 Gyr. We do not observe a strong variation in the age distribution along RG, though we find an enhanced fraction of older clusters (t > 1 Gyr) in the inner disk. In contrast, the distribution strongly varies along Z. The high altitude distribution practically does not contain clusters with t < 1 Gyr. With simple assumptions on the cluster formation history, the cluster initial mass function and the cluster lifetime we can reproduce the observations. The cluster formation rate and the cluster lifetime are strongly degenerate, which does not allow us to disentangle different formation scenarios. In all cases the cluster formation rate is strongly declining with time, and the cluster initial mass function is very shallow at the high mass end.

Evolution of the cluster optical galaxy luminosity function in the CFHTLS: breaking the degeneracy between mass and redshift

Science.gov (United States)

Sarron, F.; Martinet, N.; Durret, F.; Adami, C.

2018-06-01

Obtaining large samples of galaxy clusters is important for cosmology: cluster counts as a function of redshift and mass can constrain the parameters of our Universe. They are also useful in order to understand the formation and evolution of clusters. We develop an improved version of the Adami & MAzure Cluster FInder (AMACFI), now the Adami, MAzure & Sarron Cluster FInder (AMASCFI), and apply it to the 154 deg2 of the Canada-France-Hawaii Telescope Legacy Survey (CFHTLS) to obtain a large catalogue of 1371 cluster candidates with mass M200 > 1014 M⊙ and redshift z ≤ 0.7. We derive the selection function of the algorithm from the Millennium simulation, and cluster masses from a richness-mass scaling relation built from matching our candidates with X-ray detections. We study the evolution of these clusters with mass and redshift by computing the i'-band galaxy luminosity functions (GLFs) for the early-type (ETGs) and late-type galaxies (LTGs). This sample is 90% pure and 70% complete, and therefore our results are representative of a large fraction of the cluster population in these redshift and mass ranges. We find an increase in both the ETG and LTG faint populations with decreasing redshift (with Schechter slopes αETG = -0.65 ± 0.03 and αLTG = -0.95 ± 0.04 at z = 0.6, and αETG = -0.79 ± 0.02 and αLTG = -1.26 ± 0.03 at z = 0.2) and also a decrease in the LTG (but not the ETG) bright end. Our large sample allows us to break the degeneracy between mass and redshift, finding that the redshift evolution is more pronounced in high-mass clusters, but that there is no significant dependence of the faint end on mass for a given redshift. These results show that the cluster red sequence is mainly formed at redshift z > 0.7, and that faint ETGs continue to enrich the red sequence through quenching of brighter LTGs at z ≤ 0.7. The efficiency of this quenching is higher in large-mass clusters, while the accretion rate of faint LTGs is lower as the more massive

Chemical Abundances of Red Giant Stars in the Globular Cluster M107 (NGC 6171)

Science.gov (United States)

O'Connell, Julia E.; Johnson, Christian I.; Pilachowski, Catherine A.; Burks, Geoffrey

2011-10-01

We present chemical abundances of Al and several Fe-Peak and neutron-capture elements for 13 red giant branch stars in the Galactic globular cluster NGC 6171 (M107). The abundances were determined using equivalent width and spectrum synthesis analyses of moderate-resolution ( R ˜ 15,000), moderate signal-to-noise ratio ( ˜ 80) spectra obtained with the WIYN telescope and Hydra multifiber spectrograph. A comparison between photometric and spectroscopic effective temperature estimates seems to indicate that a reddening value of E(B - V) = 0.46 may be more appropriate for this cluster than the more commonly used value of E(B - V) = 0.33. Similarly, we found that a distance modulus of (m - M)V ≈ 13.7 provided reasonable surface gravity estimates for the stars in our sample. Our spectroscopic analysis finds M107 to be moderately metal-poor with = -0.93 and also exhibits a small star-to-star metallicity dispersion (σ = 0.04). These results are consistent with previous photometric and spectroscopic studies. Aluminum appears to be moderately enhanced in all program stars ( = +0.39, σ = 0.11). The relatively small star-to-star scatter in [Al/Fe] differs from the trend found in more metal-poor globular clusters, and is more similar to what is found in clusters with [Fe/H] ≳ -1. The cluster also appears to be moderately r-process-enriched with = +0.32 (σ = 0.17).

Interpretation of custom designed Illumina genotype cluster plots for targeted association studies and next-generation sequence validation

Directory of Open Access Journals (Sweden)

Tindall Elizabeth A

2010-02-01

Full Text Available Abstract Background High-throughput custom designed genotyping arrays are a valuable resource for biologically focused research studies and increasingly for validation of variation predicted by next-generation sequencing (NGS technologies. We investigate the Illumina GoldenGate chemistry using custom designed VeraCode and sentrix array matrix (SAM assays for each of these applications, respectively. We highlight applications for interpretation of Illumina generated genotype cluster plots to maximise data inclusion and reduce genotyping errors. Findings We illustrate the dramatic effect of outliers in genotype calling and data interpretation, as well as suggest simple means to avoid genotyping errors. Furthermore we present this platform as a successful method for two-cluster rare or non-autosomal variant calling. The success of high-throughput technologies to accurately call rare variants will become an essential feature for future association studies. Finally, we highlight additional advantages of the Illumina GoldenGate chemistry in generating unusually segregated cluster plots that identify potential NGS generated sequencing error resulting from minimal coverage. Conclusions We demonstrate the importance of visually inspecting genotype cluster plots generated by the Illumina software and issue warnings regarding commonly accepted quality control parameters. In addition to suggesting applications to minimise data exclusion, we propose that the Illumina cluster plots may be helpful in identifying potential in-put sequence errors, particularly important for studies to validate NGS generated variation.

Cluster-Based Multipolling Sequencing Algorithm for Collecting RFID Data in Wireless LANs

Science.gov (United States)

Choi, Woo-Yong; Chatterjee, Mainak

2015-03-01

With the growing use of RFID (Radio Frequency Identification), it is becoming important to devise ways to read RFID tags in real time. Access points (APs) of IEEE 802.11-based wireless Local Area Networks (LANs) are being integrated with RFID networks that can efficiently collect real-time RFID data. Several schemes, such as multipolling methods based on the dynamic search algorithm and random sequencing, have been proposed. However, as the number of RFID readers associated with an AP increases, it becomes difficult for the dynamic search algorithm to derive the multipolling sequence in real time. Though multipolling methods can eliminate the polling overhead, we still need to enhance the performance of the multipolling methods based on random sequencing. To that extent, we propose a real-time cluster-based multipolling sequencing algorithm that drastically eliminates more than 90% of the polling overhead, particularly so when the dynamic search algorithm fails to derive the multipolling sequence in real time.

FIRST OBSERVATIONAL SIGNATURE OF ROTATIONAL DECELERATION IN A MASSIVE, INTERMEDIATE-AGE STAR CLUSTER IN THE MAGELLANIC CLOUDS

Energy Technology Data Exchange (ETDEWEB)

Wu, Xiaohan [School of Physics, Peking University, Yi He Yuan Lu 5, Hai Dian District, Beijing 100871 (China); Li, Chengyuan; De Grijs, Richard [Kavli Institute for Astronomy and Astrophysics and Department of Astronomy, Peking University, Yi He Yuan Lu 5, Hai Dian District, Beijing 100871 (China); Deng, Licai, E-mail: grijs@pku.edu.cn [Key Laboratory for Optical Astronomy, National Astronomical Observatories, Chinese Academy of Sciences, 20A Datun Road, Chaoyang District, Beijing 100012 (China)

2016-07-20

While the extended main-sequence turnoffs (eMSTOs) found in almost all 1–2 Gyr old star clusters in the Magellanic Clouds are often explained by postulating extended star formation histories (SFHs), the tight subgiant branches (SGBs) seen in some clusters challenge this popular scenario. Puzzlingly, the SGB of the eMSTO cluster NGC 419 is significantly broader at bluer than at redder colors. We carefully assess and confirm the reality of this observational trend. If we would assume that the widths of the features in color–magnitude space were entirely owing to a range in stellar ages, the SFHs of the eMSTO stars and the blue SGB region would be significantly more prolonged than that of the red part of the SGB. This cannot be explained by assuming an internal age spread. We show that rotational deceleration of a population of rapidly rotating stars, a currently hotly debated alternative scenario, naturally explains the observed trend along the SGB. Our analysis shows that a “converging” SGB could be produced if the cluster is mostly composed of rapidly rotating stars that slow down over time owing to the conservation of angular momentum during their evolutionary expansion from main-sequence turnoff stars to red giants.

Isolation, sequencing and expression of RED, a novel human gene encoding an acidic-basic dipeptide repeat.

Science.gov (United States)

Assier, E; Bouzinba-Segard, H; Stolzenberg, M C; Stephens, R; Bardos, J; Freemont, P; Charron, D; Trowsdale, J; Rich, T

1999-04-16

A novel human gene RED, and the murine homologue, MuRED, were cloned. These genes were named after the extensive stretch of alternating arginine (R) and glutamic acid (E) or aspartic acid (D) residues that they contain. We term this the 'RED' repeat. The genes of both species were expressed in a wide range of tissues and we have mapped the human gene to chromosome 5q22-24. MuRED and RED shared 98% sequence identity at the amino acid level. The open reading frame of both genes encodes a 557 amino acid protein. RED fused to a fluorescent tag was expressed in nuclei of transfected cells and localised to nuclear dots. Co-localisation studies showed that these nuclear dots did not contain either PML or Coilin, which are commonly found in the POD or coiled body nuclear compartments. Deletion of the amino terminal 265 amino acids resulted in a failure to sort efficiently to the nucleus, though nuclear dots were formed. Deletion of a further 50 amino acids from the amino terminus generates a protein that can sort to the nucleus but is unable to generate nuclear dots. Neither construct localised to the nucleolus. The characteristics of RED and its nuclear localisation implicate it as a regulatory protein, possibly involved in transcription.

THE NEXT GENERATION VIRGO CLUSTER SURVEY. XIX. TOMOGRAPHY OF MILKY WAY SUBSTRUCTURES IN THE NGVS FOOTPRINT

Energy Technology Data Exchange (ETDEWEB)

Lokhorst, Deborah; Starkenburg, Else; Navarro, Julio F. [Department of Physics and Astronomy, University of Victoria, Victoria, BC V8P 1A1, Canada (Canada); McConnachie, Alan W.; Ferrarese, Laura; Côté, Patrick; Gwyn, Stephen D. J. [National Research Council, Herzberg Astronomy and Astrophysics, 5071 West Saanich Road, Victoria, BC V9E 2E7 (Canada); Liu, Chengze [Center for Astronomy and Astrophysics, Department of Physics and Astronomy, Shanghai Jiao Tong University, Shanghai 200240 (China); Peng, Eric W. [Department of Astronomy, Peking University, Beijing 100871 (China); Cuillandre, Jean-Charles [CEA/IRFU/SAP, Laboratoire AIM Paris-Saclay, CNRS/INSU, Université Paris Diderot, Observatoire de Paris, PSL Research University, F-91191 Gif-sur-Yvette Cedex (France); Guhathakurta, Puragra, E-mail: dml@uvic.ca [Department of Astronomy and Astrophysics, University of California Santa Cruz, 1156 High Street, Santa Cruz, CA 95064 (United States)

2016-03-10

The Next Generation Virgo Cluster Survey (NGVS) is a deep u*giz survey targeting the Virgo Cluster of galaxies at 16.5 Mpc. This survey provides high-quality photometry over an ∼100 deg{sup 2} region straddling the constellations of Virgo and Coma Berenices. This sightline through the Milky Way is noteworthy in that it intersects two of the most prominent substructures in the Galactic halo: the Virgo overdensity (VOD) and Sagittarius stellar stream (close to its bifurcation point). In this paper, we use deep u*gi imaging from the NGVS to perform tomography of the VOD and Sagittarius stream using main-sequence turnoff (MSTO) stars as a halo tracer population. The VOD, whose centroid is known to lie at somewhat lower declinations (α ∼ 190°, δ ∼ −5°) than is covered by the NGVS, is nevertheless clearly detected in the NGVS footprint at distances between ∼8 and 25 kpc. By contrast, the Sagittarius stream is found to slice directly across the NGVS field at distances between 25 and 40 kpc, with a density maximum at ≃35 kpc. No evidence is found for new substructures beyond the Sagittarius stream, at least out to a distance of ∼90 kpc—the largest distance to which we can reliably trace the halo using MSTO stars. We find clear evidence for a distance gradient in the Sagittarius stream across the ∼30° of sky covered by the NGVS and its flanking fields. We compare our distance measurements along the stream with those predicted by leading stream models.

THE NEXT GENERATION VIRGO CLUSTER SURVEY. XIX. TOMOGRAPHY OF MILKY WAY SUBSTRUCTURES IN THE NGVS FOOTPRINT

International Nuclear Information System (INIS)

Lokhorst, Deborah; Starkenburg, Else; Navarro, Julio F.; McConnachie, Alan W.; Ferrarese, Laura; Côté, Patrick; Gwyn, Stephen D. J.; Liu, Chengze; Peng, Eric W.; Cuillandre, Jean-Charles; Guhathakurta, Puragra

2016-01-01

The Next Generation Virgo Cluster Survey (NGVS) is a deep u*giz survey targeting the Virgo Cluster of galaxies at 16.5 Mpc. This survey provides high-quality photometry over an ∼100 deg 2 region straddling the constellations of Virgo and Coma Berenices. This sightline through the Milky Way is noteworthy in that it intersects two of the most prominent substructures in the Galactic halo: the Virgo overdensity (VOD) and Sagittarius stellar stream (close to its bifurcation point). In this paper, we use deep u*gi imaging from the NGVS to perform tomography of the VOD and Sagittarius stream using main-sequence turnoff (MSTO) stars as a halo tracer population. The VOD, whose centroid is known to lie at somewhat lower declinations (α ∼ 190°, δ ∼ −5°) than is covered by the NGVS, is nevertheless clearly detected in the NGVS footprint at distances between ∼8 and 25 kpc. By contrast, the Sagittarius stream is found to slice directly across the NGVS field at distances between 25 and 40 kpc, with a density maximum at ≃35 kpc. No evidence is found for new substructures beyond the Sagittarius stream, at least out to a distance of ∼90 kpc—the largest distance to which we can reliably trace the halo using MSTO stars. We find clear evidence for a distance gradient in the Sagittarius stream across the ∼30° of sky covered by the NGVS and its flanking fields. We compare our distance measurements along the stream with those predicted by leading stream models

Identifying spatial clustering properties of the 1997-2003 Liguria (Northern Italy) forest-fire sequence

International Nuclear Information System (INIS)

Telesca, Luciano; Amatulli, Giuseppe; Lasaponara, Rosa; Lovallo, Michele; Santulli, Adriano

2007-01-01

The spatial clustering of the forest-fire sequence (1997-2003) of Liguria Region (Northern Italy) has been analysed using the correlation dimension D C , calculated by means of the correlation integral method. Studying the variations of this parameter, we recognize the presence of a strong variability of the spatial clusterization, modulated by seasonal cycles. Furthermore, we found that the larger fires (size >400 ha) mark the cyclic behaviour of the correlation dimension

Asteroseismology of old open clusters with Kepler: direct estimate of the integrated red giant branch mass-loss in NGC 6791 and 6819

DEFF Research Database (Denmark)

Miglio, A.; Brogaard, Karsten Frank; Stello, D.

2012-01-01

Mass-loss of red giant branch (RGB) stars is still poorly determined, despite its crucial role in the chemical enrichment of galaxies. Thanks to the recent detection of solar-like oscillations in G–K giants in open clusters with Kepler, we can now directly determine stellar masses...... for a statistically significant sample of stars in the old open clusters NGC 6791 and 6819. The aim of this work is to constrain the integrated RGB mass-loss by comparing the average mass of stars in the red clump (RC) with that of stars in the low-luminosity portion of the RGB [i.e. stars with L≲L(RC)]. Stellar...... masses were determined by combining the available seismic parameters νmax and Δν with additional photometric constraints and with independent distance estimates. We measured the masses of 40 stars on the RGB and 19 in the RC of the old metal-rich cluster NGC 6791. We find that the difference between...

Centre-excised X-ray luminosity as an efficient mass proxy for future galaxy cluster surveys

Science.gov (United States)

Mantz, Adam B.; Allen, Steven W.; Morris, R. Glenn; von der Linden, Anja

2018-01-01

The cosmological constraining power of modern galaxy cluster catalogues can be improved by obtaining low-scatter mass proxy measurements for even a small fraction of sources. In the context of large upcoming surveys that will reveal the cluster population down to the group scale and out to high redshifts, efficient strategies for obtaining such mass proxies will be valuable. In this work, we use high-quality weak-lensing and X-ray mass estimates for massive clusters in current X-ray-selected catalogues to revisit the scaling relations of the projected, centre-excised X-ray luminosity (Lce), which previous work suggests correlates tightly with total mass. Our data confirm that this is the case with Lce having an intrinsic scatter at fixed mass comparable to that of gas mass, temperature or YX. Compared to the other proxies, however, Lce is less susceptible to systematic uncertainties due to background modelling, and can be measured precisely with shorter exposures. This opens up the possibility of using Lce to estimate masses for large numbers of clusters discovered by new X-ray surveys (e.g. eROSITA) directly from the survey data, as well as for clusters discovered at other wavelengths with relatively short follow-up observations. We describe a simple procedure for making such estimates from X-ray surface brightness data, and comment on the spatial resolution required to apply this method as a function of cluster mass and redshift. We also explore the potential impact of Chandra and XMM-Newton follow-up observations over the next decade on dark energy constraints from new cluster surveys.

Low-ionization galaxies and evolution in a pilot survey up to z = 1

International Nuclear Information System (INIS)

Giraud, Edmond; Gu Qiusheng; Melnick, Jorge; Selman, Fernando; Quintana, Hernan; Toledo, Ignacio; Zelaya, Paula

2011-01-01

We present galactic spectroscopic data from a pencil beam of 10.75' x 7.5' centered on the X-ray cluster RXJ0054.0-2823 at z = 0.29. We study the spectral evolution of galaxies from z = 1 down to the cluster redshift in a magnitude-limited sample at R ≤ 23, for which the statistical properties of the sample are well understood. We divide emission-line galaxies into star-forming galaxies, Low Ionization Nuclear Emission line Regions (LINERs), and Seyferts by using emission-line ratios of [OII], Hβ, and [OIII], and derive stellar fractions from population synthesis models. We focus our analysis on absorption and low-ionization galaxies. For absorption-line galaxies, we recover the well-known result that these galaxies have had no detectable evolution since z ∼ 0.6 - 0.7, but we also find that in the range z = 0.65 - 1, at least 50% of the stars in bright absorption systems are younger than 2.5 Gyr Faint absorption-line galaxies in the cluster at z = 0.29 also had significant star formation during the previous 2 - 3 Gyr, but their brighter counterparts seem to be only composed of old stars. At z ∼ 0.8, our dynamically young cluster had a truncated red-sequence. This result seems to be consistent with a scenario where the final assembly of E/S0 took place at z < 1. In the volume-limited range 0.35 ≤ z ≤ 0.65, we find that 23% of the early-type galaxies have LINER-like spectra with Hβ in absorption and have a significant component of A stars. The vast majority of LINERs in our sample have significant populations of young and intermediate-aged stars and are thus not related to AGNs, but to the population of 'retired galaxies' recently identified by Cid Fernandes et al. in the Sloan Digital Sky Survey (SDSS). Early-type LINERs with various fractions of A stars and E+A galaxies appear to play an important role in the formation of the red sequence.

A catalogue of clusters of galaxies identified from all sky surveys of 2MASS, WISE, and SuperCOSMOS

Science.gov (United States)

Wen, Z. L.; Han, J. L.; Yang, F.

2018-03-01

We identify 47 600 clusters of galaxies from photometric data of Two Micron All Sky Survey (2MASS), Wide-field Infrared Survey Explorer (WISE), and SuperCOSMOS, among which 26 125 clusters are recognized for the first time and mostly in the sky outside the Sloan Digital Sky Survey (SDSS) area. About 90 per cent of massive clusters of M500 > 3 × 1014 M⊙ in the redshift range of 0.025 < z < 0.3 have been detected from such survey data, and the detection rate drops down to 50 per cent for clusters with a mass of M500 ˜ 1 × 1014 M⊙. Monte Carlo simulations show that the false detection rate for the whole cluster sample is less than 5 per cent. By cross-matching with ROSAT and XMM-Newton sources, we get 779 new X-ray cluster candidates which have X-ray counterparts within a projected offset of 0.2 Mpc.

Isolation and characterisation of a ruminant alphaherpesvirus closely related to bovine herpesvirus 1 in a free-ranging red deer

Directory of Open Access Journals (Sweden)

Belák Sándor

2007-09-01

Full Text Available Abstract Background The genus Varicellovirus of the Herpesviridae subfamily Alphaherpesvirinae includes a cluster of viruses antigenically and genetically related to bovine herpesvirus 1 (BoHV-1: namely bovine herpesvirus 5 (BoHV-5, bubaline herpesvirus 1 (BuHV-1, caprine herpesvirus 1 (CpHV-1, cervid herpesviruses 1 (CvHV-1 and 2 (CvHV-2 and elk herpesvirus 1 (ElkHV-1. Considering the serological relationship between these ruminant alphaherpesviruses, several surveys have studied the occurrence of BoHV-1 related virus infection in wild and domestic ruminant species. In this way, a recent investigation has indicated, in Belgium, a high increase in the serological prevalence of BoHV-1 related virus infection in free-ranging red deer population. In this context, it has been decided to investigate the presence of an alphaherpesvirus spreading in the Belgian free-ranging red deer population. Results The current study reports the first isolation in a free-ranging red deer of a BoHV-1 closely related virus. The isolate was antigenically, genomically and genetically characterised by comparison with several ruminant alphaherpesvirus. Immunofluorescence assays revealed the isolate was antigenically distinct from bovine and caprine alphaherpesviruses. Similarly, BamHI and BstEII restriction analyses demonstrated the genomic difference between the isolate and the other ruminant alphaherpesviruses. Next, the sequencing of selected parts of UL27 and US8 genes showed a high degree of homologies between each BoHV-1 related ruminant alphaherpesvirus and the isolate. Besides the close relationship between all ruminant alphaherpesviruses, the phylogenetic analysis revealed that the isolate clustered with CvHV-1. Conclusion The first isolation of a virus closely related to BoHV-1 in a free-ranging red deer is reported. Data demonstrate that a CvHV-1 strain, named Anlier, circulates in wild red deer in continental Europe. Anlier strain show consistent differences

Fish market surveys indicate unsustainable elasmobranch fisheries in the Saudi Arabian Red Sea

KAUST Repository

Spaet, Julia L.Y.; Berumen, Michael L.

2015-01-01

), information on any aspects of these fisheries are very limited. Here we document the structure, composition and biological characteristics of eastern Red Sea elasmobranch fisheries based on genetic identification and market survey data over an intensive two

A near-infrared survey for pre-main sequence stars in Taurus

Science.gov (United States)

Gomez, Mercedes; Kenyon, Scott J.; Hartmann, Lee

1994-01-01

We present a near-infrared survey of approximately 2 sq deg covering parts of L1537, L1538, and Heiles cloud 2 in the Taurus-Auriga molecular cloud. Although this study is more sensitive than previous attempts to identify pre-main sequence stars in Taurus-Auriga, our survey regions contain only one new optically visible, young star. We did find several candidate embedded protostars; additional 10 micrometer photometry is necessary to verify the pre-main sequence nature of these sources. Our results--combined with those of previous surveys--show that the L1537/L1538 clouds contain no pre-main sequence stars. These two clouds are less dense than the active star formation sites in Taurus-Auriga, which suggests a cloud must achieve a threshold density to form stars.

Test of Gravity on Large Scales with Weak Gravitational Lensing and Clustering Measurements of SDSS Luminous Red Galaxies

Science.gov (United States)

Reyes, Reinabelle; Mandelbaum, R.; Seljak, U.; Gunn, J.; Lombriser, L.

2009-01-01

We perform a test of gravity on large scales (5-50 Mpc/h) using 70,000 luminous red galaxies (LRGs) from the Sloan Digital Sky Survey (SDSS) DR7 with redshifts 0.16clustering-- that can discriminate between different theories of gravity and is largely independent of galaxy bias and sigma_8. In particular, E_G is sensitive to the relation between the spatial and temporal scalar perturbations in the space-time metric. While these two potentials are equivalent in concordance cosmology (GR+LCDM) in the absence of anisotropic stress, they are not equivalent in alternative theories of gravity in general, so that different models make different predictions for E_G. We find E_G=0.37±0.05 averaged over scales 5surveys such as LSST, for which a very high signal-to-noise measurement will be possible.

THE JCMT GOULD BELT SURVEY: DENSE CORE CLUSTERS IN ORION A

International Nuclear Information System (INIS)

Lane, J.; Kirk, H.; Johnstone, D.; Mairs, S.; Francesco, J. Di; Sadavoy, S.; Hatchell, J.; Berry, D. S.; Jenness, T.; Hogerheijde, M. R.; Ward-Thompson, D.

2016-01-01

The Orion A molecular cloud is one of the most well-studied nearby star-forming regions, and includes regions of both highly clustered and more dispersed star formation across its full extent. Here, we analyze dense, star-forming cores identified in the 850 and 450 μ m SCUBA-2 maps from the JCMT Gould Belt Legacy Survey. We identify dense cores in a uniform manner across the Orion A cloud and analyze their clustering properties. Using two independent lines of analysis, we find evidence that clusters of dense cores tend to be mass segregated, suggesting that stellar clusters may have some amount of primordial mass segregation already imprinted in them at an early stage. We also demonstrate that the dense core clusters have a tendency to be elongated, perhaps indicating a formation mechanism linked to the filamentary structure within molecular clouds.

THE JCMT GOULD BELT SURVEY: DENSE CORE CLUSTERS IN ORION A

Energy Technology Data Exchange (ETDEWEB)

Lane, J.; Kirk, H.; Johnstone, D.; Mairs, S.; Francesco, J. Di [NRC Herzberg Astronomy and Astrophysics, 5071 West Saanich Road, Victoria, BC, V9E 2E7 (Canada); Sadavoy, S. [Max Planck Institute for Astronomy, Königstuhl 17, D-69117 Heidelberg (Germany); Hatchell, J. [Physics and Astronomy, University of Exeter, Stocker Road, Exeter EX4 4QL (United Kingdom); Berry, D. S. [East Asian Observatory, 660 N. A‘ohōkū Place, University Park, Hilo, Hawaii 96720 (United States); Jenness, T. [Joint Astronomy Centre, 660 N. A‘ohōkū Place, University Park, Hilo, Hawaii 96720 (United States); Hogerheijde, M. R. [Leiden Observatory, Leiden University, P.O. Box 9513, 2300 RA Leiden (Netherlands); Ward-Thompson, D. [Jeremiah Horrocks Institute, University of Central Lancashire, Preston, Lancashire, PR1 2HE (United Kingdom); Collaboration: JCMT Gould Belt Survey Team

2016-12-10

The Orion A molecular cloud is one of the most well-studied nearby star-forming regions, and includes regions of both highly clustered and more dispersed star formation across its full extent. Here, we analyze dense, star-forming cores identified in the 850 and 450 μ m SCUBA-2 maps from the JCMT Gould Belt Legacy Survey. We identify dense cores in a uniform manner across the Orion A cloud and analyze their clustering properties. Using two independent lines of analysis, we find evidence that clusters of dense cores tend to be mass segregated, suggesting that stellar clusters may have some amount of primordial mass segregation already imprinted in them at an early stage. We also demonstrate that the dense core clusters have a tendency to be elongated, perhaps indicating a formation mechanism linked to the filamentary structure within molecular clouds.

Massive open star clusters using the VVV survey. I. Presentation of the data and description of the approach

Science.gov (United States)

Chené, A.-N.; Borissova, J.; Clarke, J. R. A.; Bonatto, C.; Majaess, D. J.; Moni Bidin, C.; Sale, S. E.; Mauro, F.; Kurtev, R.; Baume, G.; Feinstein, C.; Ivanov, V. D.; Geisler, D.; Catelan, M.; Minniti, D.; Lucas, P.; de Grijs, R.; Kumar, M. S. N.

2012-09-01

Context. The ESO Public Survey "VISTA Variables in the Vía Láctea" (VVV) provides deep multi-epoch infrared observations for unprecedented 562 sq. degrees of the Galactic bulge, and adjacent regions of the disk. Aims: The VVV observations will foster the construction of a sample of Galactic star clusters with reliable and homogeneously derived physical parameters (e.g., age, distance, and mass, etc.). In this first paper in a series, the methodology employed to establish cluster parameters for the envisioned database are elaborated upon by analysing four known young open clusters: Danks 1, Danks 2, RCW 79, and DBS 132. The analysis offers a first glimpse of the information that can be gleaned from the VVV observations for clusters in the final database. Methods: Wide-field, deep JHKs VVV observations, combined with new infrared spectroscopy, are employed to constrain fundamental parameters for a subset of clusters. Results: Results are inferred from VVV near-infrared photometry and numerous low resolution spectra (typically more than 10 per cluster). The high quality of the spectra and the deep wide-field VVV photometry enables us to precisely and independently determine the characteristics of the clusters studied, which we compare to previous determinations. An anomalous reddening law in the direction of the Danks clusters is found, specifically E(J - H)/E(H - Ks) = 2.20 ± 0.06, which exceeds published values for the inner Galaxy. The G305 star forming complex, which includes the Danks clusters, lies beyond the Sagittarius-Carina spiral arm and occupies the Centaurus arm. Finally, the first deep infrared colour-magnitude diagram of RCW 79 is presented, which reveals a sizeable pre-main sequence population. A list of candidate variable stars in G305 region is reported. Conclusions: This study demonstrates the strength of the dataset and methodology employed, and constitutes the first step of a broader study which shall include reliable parameters for a sizeable

THE HUBBLE SPACE TELESCOPE UV LEGACY SURVEY OF GALACTIC GLOBULAR CLUSTERS. VIII. PRELIMINARY PUBLIC CATALOG RELEASE

Energy Technology Data Exchange (ETDEWEB)

Soto, M.; Bellini, A.; Anderson, J.; Van der Marel, R. P.; Brown, T. M. [Space Telescope Science Institute, San Martin Drive 3700, Baltimore, MD 21218 (United States); Piotto, G.; Granata, V.; Ortolani, S.; Nardiello, D. [Dipartimento di Fisica e Astronomia Galileo Galilei, Università di Padova, Vicolo dell’Osservatorio 3, I-35122 Padova (Italy); Bedin, L. R. [INAF-Osservatorio Astronomico di Padova, Vicolo dell’Osservatorio 5, I-35122 Padova (Italy); Milone, A. P. [Research School of Astronomy and Astrophysics, The Australian National University, Cotter Road, Weston, ACT, 2611 (Australia); Cool, A. M. [Department of Physics and Astronomy, San Francisco State University, 1600 Holloway Avenue, San Francisco, CA 94132 (United States); King, I. R. [Department of Astronomy, University of Washington, Box 351580, Seattle, WA 98195-1580 (United States); Sarajedini, A. [Department of Astronomy, University of Florida, 211 Bryant Space Science Center, Gainesville, FL 32611 (United States); Cassisi, S. [Osservatorio Astronomico di Teramo, Via Mentore Maggini s.n.c., I-64100 Teramo (Italy); Aparicio, A.; Hidalgo, S., E-mail: mario.soto@uda.cl [Instituto de Astrofísica de Canarias, E-38200 La Laguna, Tenerife, Canary Islands (Spain)

2017-01-01

The Hubble Space Telescope (HST) UV Legacy Survey of Galactic Globular Clusters (GO-13297) has been specifically designed to complement the existing F606W and F814W observations of the Advanced Camera for Surveys (ACS) Globular Cluster Survey (GO-10775) by observing the most accessible 47 of the previous survey’s 65 clusters in three WFC3/UVIS filters F275W, F336W, and F438W. The new survey also adds super-solar metallicity open cluster NGC 6791 to increase the metallicity diversity. The combined survey provides a homogeneous 5-band data set that can be used to pursue a broad range of scientific investigations. In particular, the chosen UV filters allow the identification of multiple stellar populations by targeting the regions of the spectrum that are sensitive to abundance variations in C, N, and O. In order to provide the community with uniform preliminary catalogs, we have devised an automated procedure that performs high-quality photometry on the new UV observations (along with similar observations of seven other programs in the archive). This procedure finds and measures the potential sources on each individual exposure using library point-spread functions and cross-correlates these observations with the original ACS-Survey catalog. The catalog of 57 clusters we publish here will be useful to identify stars in the different stellar populations, in particular for spectroscopic follow-up. Eventually, we will construct a more sophisticated catalog and artificial-star tests based on an optimal reduction of the UV survey data, but the catalogs presented here give the community the chance to make early use of this HST Treasury survey.

The HST/ACS Coma Cluster Survey : VI. Colour gradients in giant and dwarf early-type galaxies

NARCIS (Netherlands)

den Brok, M.; Peletier, R. F.; Valentijn, E. A.; Balcells, Marc; Carter, D.; Erwin, P.; Ferguson, H. C.; Goudfrooij, P.; Graham, A. W.; Hammer, D.; Lucey, J. R.; Trentham, N.; Guzman, R.; Hoyos, C.; Kleijn, G. Verdoes; Jogee, S.; Karick, A. M.; Marinova, I.; Mouhcine, M.; Weinzirl, T.

Using deep, high-spatial-resolution imaging from the Hubble Space Telescope/Advanced Camera for Surveys (HST/ACS) Coma Cluster Treasury Survey, we determine colour profiles of early-type galaxies in the Coma cluster. From 176 galaxies brighter than M-F814W(AB) = -15 mag that are either

Cluster analysis of historical and modern hard red spring wheat cultivars based on parentage and HPLC of gluten protein

Science.gov (United States)

There have been substantial breeding efforts in North Dakota to produce wheat cultivars that are well adapted to weather conditions and disease resistance. In this study, 30 hard red spring (HRS) wheat cultivars released between 1910 and 2013 were analyzed with regard to how they cluster in terms of...

GLOBULAR AND OPEN CLUSTERS OBSERVED BY SDSS/SEGUE: THE GIANT STARS

Energy Technology Data Exchange (ETDEWEB)

Morrison, Heather L.; Ma, Zhibo; Connor, Thomas; Schechtman-Rook, Andrew; Harding, Paul [Department of Astronomy, Case Western Reserve University, Cleveland, OH 44106 (United States); Clem, James L. [Department of Physics, Grove City College, 100 Campus Dr., Grove City, PA 16127 (United States); An, Deokkeun [Department of Science Education, Ewha Womans University, Seoul 120-750 (Korea, Republic of); Casagrande, Luca [Research School of Astronomy and Astrophysics, Mount Stromlo Observatory, The Australian National University, ACT 2611 (Australia); Rockosi, Constance [UCO/Lick Observatory, University of California, Santa Cruz, 1156 High St., Santa Cruz, CA 95064 (United States); Yanny, Brian [Fermi National Accelerator Laboratory, P.O. Box 500, Batavia IL 60510 (United States); Beers, Timothy C. [Department of Physics, University of Notre Dame, 225 Nieuwland Science Hall, Notre Dame, IN 46656 (United States); Johnson, Jennifer A. [Department of Astronomy, Ohio State University, 140 West 18th Avenue, Columbus, OH 43210 (United States); Schneider, Donald P., E-mail: hlm5@case.edu [Department of Astronomy and Astrophysics, The Pennsylvania State University, University Park, PA 16802 (United States)

2016-01-15

We present griz observations for the clusters M92, M13 and NGC 6791 and gr photometry for M71, Be 29 and NGC 7789. In addition we present new membership identifications for all these clusters, which have been observed spectroscopically as calibrators for the Sloan Digital Sky Survey (SDSS)/SEGUE survey; this paper focuses in particular on the red giant branch stars in the clusters. In a number of cases, these giants were too bright to be observed in the normal SDSS survey operations, and we describe the procedure used to obtain spectra for these stars. For M71, we also present a new variable reddening map and a new fiducial for the gr giant branch. For NGC 7789, we derived a transformation from T{sub eff} to g–r for giants of near solar abundance, using IRFM T{sub eff} measures of stars with good ugriz  and 2MASS photometry and SEGUE spectra. The result of our analysis is a robust list of known cluster members with correctly dereddened and (if needed) transformed gr photometry for crucial calibration efforts for SDSS and SEGUE.

The Open Cluster Chemical Abundances and Mapping (OCCAM) Survey: Galactic Neutron CaptureAbundance Gradients

Science.gov (United States)

O'Connell, Julia; Frinchaboy, Peter M.; Shetrone, Matthew D.; Melendez, Matthew; Cunha, Katia; Majewski, Steven R.; Zasowski, Gail; APOGEE Team

2017-06-01

The evolution of elements, as a function or age, throughout the Milky Way disk provides a key constraint for galaxy evolution models. In an effort to provide these constraints, we have conducted an investigation into the r- and s- process elemental abundances for a large sample of open clusters as part of an optical follow-up to the SDSS-III/APOGEE-1 survey. Stars were identified as cluster members by the Open Cluster Chemical Abundance & Mapping (OCCAM) survey, which culls member candidates by radial velocity, metallicity and proper motion from the observed APOGEE sample. To obtain data for neutron capture elements in these clusters, we conducted a long-term observing campaign covering three years (2013-2016) using the McDonald Observatory Otto Struve 2.1-m telescope and Sandiford Cass Echelle Spectrograph (R ~ 60,000). We present Galactic neutron capture abundance gradients using 30+ clusters, within 6 kpc of the Sun, covering a range of ages from ~80 Myr to ~10 Gyr .

Magnetic record of Mio-Pliocene red clay and Quaternary loess-paleosol sequence in the Chinese Loess Plateau

Directory of Open Access Journals (Sweden)

Yougui Song

2018-02-01

Full Text Available This article presents magnetic data of a 300-m-thick Mio-Pliocene red clay and Quaternary loess-paleosol sequence near Chaona town in the Central Chinese Loess Plateau. Detailed magnetostratigraphy shows that the aeolian red clay began to accumulate at ca. 8.1 Ma. Here, we presented a high-resolution rock magnetic data at 20–40 cm intervals within 4.5–8 ka span per sample of this section, which has been published in Song et al. (2014 [1] and (2017 [2]. The dataset including the following magnetic parameters: mass magnetic susceptibility (χ, frequency-dependent susceptibility (χfd, saturation magnetization (Ms, saturation remanent magnetization (Mrs, coercive force (Bc, remanent coercivity (Bcr, saturation isothermal remanent magnetization (SIRM and S-ratio. Magnetic susceptibility and hysteresis parameters were measured at Lanzhou University and Kyoto University, respectively. This data provides a high-resolution rock magnetic evidences for understanding East Asia Monsoon change, Asian interior aridification and tectonic effect of the uplift of the Tibetan Plateau since middle Miocene period. Keywords: Rock magnetic record, Late Miocene and Pliocene red clay, Quaternary loess-paleosol sequence, Chinese Loess Plateau

Profiling of secondary metabolite gene clusters regulated by LaeA in Aspergillus niger FGSC A1279 based on genome sequencing and transcriptome analysis.

Science.gov (United States)

Wang, Bin; Lv, Yangyong; Li, Xuejie; Lin, Yiying; Deng, Hai; Pan, Li

The global regulator LaeA controls the production of many fungal secondary metabolites, possibly via chromatin remodeling. Here we aimed to survey the secondary metabolite profile regulated by LaeA in Aspergillus niger FGSC A1279 by genome sequencing and comparative transcriptomics between the laeA deletion (ΔlaeA) and overexpressing (OE-laeA) mutants. Genome sequencing revealed four putative polyketide synthase genes specific to FGSC A1279, suggesting that the corresponding polyketide compounds might be unique to FGSC A1279. RNA-seq data revealed 281 putative secondary metabolite genes upregulated in the OE-laeA mutants, including 22 secondary metabolite backbone genes. LC-MS chemical profiling illustrated that many secondary metabolites were produced in OE-laeA mutants compared to wild type and ΔlaeA mutants, providing potential resources for drug discovery. KEGG analysis annotated 16 secondary metabolite clusters putatively linked to metabolic pathways. Furthermore, 34 of 61 Zn 2 Cys 6 transcription factors located in secondary metabolite clusters were differentially expressed between ΔlaeA and OE-laeA mutants. Three secondary metabolite clusters (cluster 18, 30 and 33) containing Zn 2 Cys 6 transcription factors that were upregulated in OE-laeA mutants were putatively linked to KEGG pathways, suggesting that Zn 2 Cys 6 transcription factors might play an important role in synthesizing secondary metabolites regulated by LaeA. Taken together, LaeA dramatically influences the secondary metabolite profile in FGSC A1279. Copyright © 2017 Institut Pasteur. Published by Elsevier Masson SAS. All rights reserved.

AMICO: optimized detection of galaxy clusters in photometric surveys

Science.gov (United States)

Bellagamba, Fabio; Roncarelli, Mauro; Maturi, Matteo; Moscardini, Lauro

2018-02-01

We present Adaptive Matched Identifier of Clustered Objects (AMICO), a new algorithm for the detection of galaxy clusters in photometric surveys. AMICO is based on the Optimal Filtering technique, which allows to maximize the signal-to-noise ratio (S/N) of the clusters. In this work, we focus on the new iterative approach to the extraction of cluster candidates from the map produced by the filter. In particular, we provide a definition of membership probability for the galaxies close to any cluster candidate, which allows us to remove its imprint from the map, allowing the detection of smaller structures. As demonstrated in our tests, this method allows the deblending of close-by and aligned structures in more than 50 per cent of the cases for objects at radial distance equal to 0.5 × R200 or redshift distance equal to 2 × σz, being σz the typical uncertainty of photometric redshifts. Running AMICO on mocks derived from N-body simulations and semi-analytical modelling of the galaxy evolution, we obtain a consistent mass-amplitude relation through the redshift range of 0.3 slope of ∼0.55 and a logarithmic scatter of ∼0.14. The fraction of false detections is steeply decreasing with S/N and negligible at S/N > 5.

Isolation of Hox cluster genes from insects reveals an accelerated sequence evolution rate.

Directory of Open Access Journals (Sweden)

Heike Hadrys

Full Text Available Among gene families it is the Hox genes and among metazoan animals it is the insects (Hexapoda that have attracted particular attention for studying the evolution of development. Surprisingly though, no Hox genes have been isolated from 26 out of 35 insect orders yet, and the existing sequences derive mainly from only two orders (61% from Hymenoptera and 22% from Diptera. We have designed insect specific primers and isolated 37 new partial homeobox sequences of Hox cluster genes (lab, pb, Hox3, ftz, Antp, Scr, abd-a, Abd-B, Dfd, and Ubx from six insect orders, which are crucial to insect phylogenetics. These new gene sequences provide a first step towards comparative Hox gene studies in insects. Furthermore, comparative distance analyses of homeobox sequences reveal a correlation between gene divergence rate and species radiation success with insects showing the highest rate of homeobox sequence evolution.

CHEMICAL ABUNDANCE PATTERNS IN THE INNER GALAXY: THE SCUTUM RED SUPERGIANT CLUSTERS

International Nuclear Information System (INIS)

Davies, Ben; Origlia, Livia; Kudritzki, Rolf-Peter; Figer, Don F.; Rich, R. Michael; Najarro, Francisco; Negueruela, Ignacio; Clark, J. Simon

2009-01-01

The location of the Scutum Red Supergiant (RSG) clusters at the end of the Galactic Bar makes them an excellent probe of the Galaxy's secular evolution, while the clusters themselves are ideal testbeds in which to study the predictions of stellar evolutionary theory. To this end, we present a study of the RSG's surface abundances using a combination of high-resolution Keck/NIRSPEC H-band spectroscopy and spectral synthesis analysis. We provide abundance measurements for elements C, O, Si, Mg, Ti, and Fe. We find that the surface abundances of the stars studied are consistent with CNO burning and deep, rotationally enhanced mixing. The average α/Fe ratios of the clusters are solar, consistent with a thin-disk population. However, we find significantly subsolar Fe/H ratios for each cluster, a result which strongly contradicts a simple extrapolation of the Galactic metallicity gradient to lower Galactocentric distances. We suggest that a simple one-dimensional parameterization of the Galaxy's abundance patterns is insufficient at low Galactocentric distances, as large azimuthal variations may be present. Indeed, we show that the abundances of O, Si, and Mg are consistent with independent measurements of objects in similar locations in the Galaxy. In combining our results with other data in the literature, we present evidence for large-scale (∼ kpc) azimuthal variations in abundances at Galactocentric distances of 3-5 kpc. While we cannot rule out that this observed behavior is due to systematic offsets between different measurement techniques, we do find evidence for similar behavior in a study of the barred spiral galaxy NGC 4736 which uses homogeneous methodology. We suggest that these azimuthal abundance variations could result from the intense but patchy star formation driven by the potential of the central bar.

Identifying Patient Attitudinal Clusters Associated with Asthma Control: The European REALISE Survey.

Science.gov (United States)

van der Molen, Thys; Fletcher, Monica; Price, David

Asthma is a highly heterogeneous disease that can be classified into different clinical phenotypes, and treatment may be tailored accordingly. However, factors beyond purely clinical traits, such as patient attitudes and behaviors, can also have a marked impact on treatment outcomes. The objective of this study was to further analyze data from the REcognise Asthma and LInk to Symptoms and Experience (REALISE) Europe survey, to identify distinct patient groups sharing common attitudes toward asthma and its management. Factor analysis of respondent data (N = 7,930) from the REALISE Europe survey consolidated the 34 attitudinal variables provided by the study population into a set of 8 summary factors. Cluster analyses were used to identify patient clusters that showed similar attitudes and behaviors toward each of the 8 summary factors. Five distinct patient clusters were identified and named according to the key characteristics comprising that cluster: "Confident and self-managing," "Confident and accepting of their asthma," "Confident but dependent on others," "Concerned but confident in their health care professional (HCP)," and "Not confident in themselves or their HCP." Clusters showed clear variability in attributes such as degree of confidence in managing their asthma, use of reliever and preventer medication, and level of asthma control. The 5 patient clusters identified in this analysis displayed distinctly different personal attitudes that would require different approaches in the consultation room certainly for asthma but probably also for other chronic diseases. Copyright © 2018 The Authors. Published by Elsevier Inc. All rights reserved.

The VIMOS Public Extragalactic Redshift Survey (VIPERS). Star formation history of passive red galaxies

Science.gov (United States)

Siudek, M.; Małek, K.; Scodeggio, M.; Garilli, B.; Pollo, A.; Haines, C. P.; Fritz, A.; Bolzonella, M.; de la Torre, S.; Granett, B. R.; Guzzo, L.; Abbas, U.; Adami, C.; Bottini, D.; Cappi, A.; Cucciati, O.; De Lucia, G.; Davidzon, I.; Franzetti, P.; Iovino, A.; Krywult, J.; Le Brun, V.; Le Fèvre, O.; Maccagni, D.; Marchetti, A.; Marulli, F.; Polletta, M.; Tasca, L. A. M.; Tojeiro, R.; Vergani, D.; Zanichelli, A.; Arnouts, S.; Bel, J.; Branchini, E.; Ilbert, O.; Gargiulo, A.; Moscardini, L.; Takeuchi, T. T.; Zamorani, G.

2017-01-01

Aims: We trace the evolution and the star formation history of passive red galaxies, using a subset of the VIMOS Public Extragalactic Redshift Survey (VIPERS). The detailed spectral analysis of stellar populations of intermediate-redshift passive red galaxies allows the build up of their stellar content to be followed over the last 8 billion years. Methods: We extracted a sample of passive red galaxies in the redshift range 0.4 quality. The spectra of passive red galaxies were stacked in narrow bins of stellar mass and redshift. We use the stacked spectra to measure the 4000 Å break (D4000) and the Hδ Lick index (HδA) with high precision. These spectral features are used as indicators of the star formation history of passive red galaxies. We compare the results with a grid of synthetic spectra to constrain the star formation epochs of these galaxies. We characterize the formation redshift-stellar mass relation for intermediate-redshift passive red galaxies. Results: We find that at z 1 stellar populations in low-mass passive red galaxies are younger than in high-mass passive red galaxies, similar to what is observed at the present epoch. Over the full analyzed redshift range 0.4 web site is http://www.vipers.inaf.it/

Color-magnitude relations in nearby galaxy clusters

Science.gov (United States)

Rasheed, Mariwan A.; Mohammad, Khalid K.

2018-06-01

The rest-frame (g-r) /Mr color-magnitude relations of 12 Abell-type clusters are analyzed in the redshift range (0.02≲ z ≲ 0.10) and within a projected radius of 0.75 Mpc using photometric data from SDSS-DR9. We show that the color-magnitude relation parameters (slope, zero-point, and scatter) do not exhibit significant evolution within this low-redshift range. Thus, we can say that during the look-back time of z ˜ 0.1 all red sequence galaxies evolve passively, without any star formation activity.

Ground survey of red lechwe in the Linyanti swamps and Chobe floodplains, northern Botswana

Directory of Open Access Journals (Sweden)

Phemelo Gadimang

2017-05-01

Full Text Available A ground survey of red lechwe was carried out in the Linyanti swamps and the Chobe floodplains of northern Botswana in the dry and wet seasons of 2012 and 2013, respectively. We documented numbers, sex ratio and age structure of red lechwe within the linear strips of 25 km × 300 m along the Linyanti swamps and the Chobe floodplains. Results indicated a significant difference in the numbers of red lechwe between sites and seasons. About 66 and 755 red lechwe were estimated for Chobe in the dry and wet season, respectively, with 343 and 261 of them estimated for Linyanti in the dry and wet season, respectively. In Chobe, the red lechwe densities varied widely between seasons (9 red lechwe/km2 – 101 red lechwe/km2 compared with Linyanti, where the densities did not vary much between seasons (35 red lechwe/km2 – 46 red lechwe/km2 . The lower densities of red lechwe in Chobe in the dry season when compared with the wet season suggest a possible seasonal shift in the distribution of red lechwe to the nearby Zambezi floodplains in Namibia. Conservation implications: The higher number of red lechwe in the Chobe floodplains in the wet season indicates the potential of the floodplains as a habitat for this species in that season. The dry season shift in the distribution of red lechwe in Chobe presents an opportunity for local communities in Namibia to engage in tourism, whereas the return of the red lechwe to the floodplains in the wet season ensures protection of the animals as well as boosts the tourism potential of the Chobe National Park.

Amino-acid sequences of trypsin inhibitors from watermelon (Citrullus vulgaris) and red bryony (Bryonia dioica) seeds.

Science.gov (United States)

Otlewski, J; Whatley, H; Polanowski, A; Wilusz, T

1987-11-01

The amino-acid sequences of two trypsin inhibitors isolated from red bryony (Bryonia dioica) and watermelon (Citrullus vulgaris) seeds are reported. Both species represent different genera of the Cucurbitaceae family, which have not been previously investigated as a source of proteinase inhibitors. The sequences are unique but are very similar to those of other proteinase inhibitors which have been isolated from squash seeds. Based on structural homology we assume that the Arg5-Ile6 peptide bond represents the reactive site bond of both inhibitors.

Structure and Sequence Analyses of Clustered Protocadherins Reveal Antiparallel Interactions that Mediate Homophilic Specificity.

Science.gov (United States)

Nicoludis, John M; Lau, Sze-Yi; Schärfe, Charlotta P I; Marks, Debora S; Weihofen, Wilhelm A; Gaudet, Rachelle

2015-11-03

Clustered protocadherin (Pcdh) proteins mediate dendritic self-avoidance in neurons via specific homophilic interactions in their extracellular cadherin (EC) domains. We determined crystal structures of EC1-EC3, containing the homophilic specificity-determining region, of two mouse clustered Pcdh isoforms (PcdhγA1 and PcdhγC3) to investigate the nature of the homophilic interaction. Within the crystal lattices, we observe antiparallel interfaces consistent with a role in trans cell-cell contact. Antiparallel dimerization is supported by evolutionary correlations. Two interfaces, located primarily on EC2-EC3, involve distinctive clustered Pcdh structure and sequence motifs, lack predicted glycosylation sites, and contain residues highly conserved in orthologs but not paralogs, pointing toward their biological significance as homophilic interaction interfaces. These two interfaces are similar yet distinct, reflecting a possible difference in interaction architecture between clustered Pcdh subfamilies. These structures initiate a molecular understanding of clustered Pcdh assemblies that are required to produce functional neuronal networks. Copyright © 2015 Elsevier Ltd. All rights reserved.

The Fornax Cluster VLT Spectroscopic Survey II - Planetary Nebulae kinematics within 200 kpc of the cluster core

Science.gov (United States)

Spiniello, C.; Napolitano, N. R.; Arnaboldi, M.; Tortora, C.; Coccato, L.; Capaccioli, M.; Gerhard, O.; Iodice, E.; Spavone, M.; Cantiello, M.; Peletier, R.; Paolillo, M.; Schipani, P.

2018-06-01

We present the largest and most spatially extended planetary nebulae (PNe) catalogue ever obtained for the Fornax cluster. We measured velocities of 1452 PNe out to 200 kpc in the cluster core using a counter-dispersed slitless spectroscopic technique with data from FORS2 on the Very Large Telescope (VLT). With such an extended spatial coverage, we can study separately the stellar haloes of some of the cluster main galaxies and the intracluster light. In this second paper of the Fornax Cluster VLT Spectroscopic Survey, we identify and classify the emission-line sources, describe the method to select PNe, and calculate their coordinates and velocities from the dispersed slitless images. From the PN 2D velocity map, we identify stellar streams that are possibly tracing the gravitational interaction of NGC 1399 with NGC 1404 and NGC 1387. We also present the velocity dispersion profile out to ˜200 kpc radii, which shows signatures of a superposition of the bright central galaxy and the cluster potential, with the latter clearly dominating the regions outside R ˜ 1000 arcsec (˜100 kpc).

Identification of sequence-related amplified polymorphism markers linked to the red leaf trait in ornamental kale (Brassica oleracea L. var. acephala).

Science.gov (United States)

Wang, Y S; Liu, Z Y; Li, Y F; Zhang, Y; Yang, X F; Feng, H

2013-04-02

Artistic diversiform leaf color is an important agronomic trait that affects the market value of ornamental kale. In the present study, genetic analysis showed that a single-dominant gene, Re (red leaf), determines the red leaf trait in ornamental kale. An F2 population consisting of 500 individuals from the cross of a red leaf double-haploid line 'D05' with a white leaf double-haploid line 'D10' was analyzed for the red leaf trait. By combining bulked segregant analysis and sequence-related amplified polymorphism technology, we identified 3 markers linked to the Re/re locus. A genetic map of the Re locus was constructed using these sequence-related amplified polymorphism markers. Two of the markers, Me8Em4 and Me8Em17, were located on one side of Re/re at distances of 2.2 and 6.4 cM, whereas the other marker, Me9Em11, was located on the other side of Re/re at a distance of 3.7 cM. These markers could be helpful for the subsequent cloning of the red trait gene and marker-assisted selection in ornamental kale breeding programs.

De novo clustering methods outperform reference-based methods for assigning 16S rRNA gene sequences to operational taxonomic units

Directory of Open Access Journals (Sweden)

Sarah L. Westcott

2015-12-01

Full Text Available Background. 16S rRNA gene sequences are routinely assigned to operational taxonomic units (OTUs that are then used to analyze complex microbial communities. A number of methods have been employed to carry out the assignment of 16S rRNA gene sequences to OTUs leading to confusion over which method is optimal. A recent study suggested that a clustering method should be selected based on its ability to generate stable OTU assignments that do not change as additional sequences are added to the dataset. In contrast, we contend that the quality of the OTU assignments, the ability of the method to properly represent the distances between the sequences, is more important.Methods. Our analysis implemented six de novo clustering algorithms including the single linkage, complete linkage, average linkage, abundance-based greedy clustering, distance-based greedy clustering, and Swarm and the open and closed-reference methods. Using two previously published datasets we used the Matthew’s Correlation Coefficient (MCC to assess the stability and quality of OTU assignments.Results. The stability of OTU assignments did not reflect the quality of the assignments. Depending on the dataset being analyzed, the average linkage and the distance and abundance-based greedy clustering methods generated OTUs that were more likely to represent the actual distances between sequences than the open and closed-reference methods. We also demonstrated that for the greedy algorithms VSEARCH produced assignments that were comparable to those produced by USEARCH making VSEARCH a viable free and open source alternative to USEARCH. Further interrogation of the reference-based methods indicated that when USEARCH or VSEARCH were used to identify the closest reference, the OTU assignments were sensitive to the order of the reference sequences because the reference sequences can be identical over the region being considered. More troubling was the observation that while both USEARCH and

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences.

Science.gov (United States)

Rideout, Jai Ram; He, Yan; Navas-Molina, Jose A; Walters, William A; Ursell, Luke K; Gibbons, Sean M; Chase, John; McDonald, Daniel; Gonzalez, Antonio; Robbins-Pianka, Adam; Clemente, Jose C; Gilbert, Jack A; Huse, Susan M; Zhou, Hong-Wei; Knight, Rob; Caporaso, J Gregory

2014-01-01

We present a performance-optimized algorithm, subsampled open-reference OTU picking, for assigning marker gene (e.g., 16S rRNA) sequences generated on next-generation sequencing platforms to operational taxonomic units (OTUs) for microbial community analysis. This algorithm provides benefits over de novo OTU picking (clustering can be performed largely in parallel, reducing runtime) and closed-reference OTU picking (all reads are clustered, not only those that match a reference database sequence with high similarity). Because more of our algorithm can be run in parallel relative to "classic" open-reference OTU picking, it makes open-reference OTU picking tractable on massive amplicon sequence data sets (though on smaller data sets, "classic" open-reference OTU clustering is often faster). We illustrate that here by applying it to the first 15,000 samples sequenced for the Earth Microbiome Project (1.3 billion V4 16S rRNA amplicons). To the best of our knowledge, this is the largest OTU picking run ever performed, and we estimate that our new algorithm runs in less than 1/5 the time than would be required of "classic" open reference OTU picking. We show that subsampled open-reference OTU picking yields results that are highly correlated with those generated by "classic" open-reference OTU picking through comparisons on three well-studied datasets. An implementation of this algorithm is provided in the popular QIIME software package, which uses uclust for read clustering. All analyses were performed using QIIME's uclust wrappers, though we provide details (aided by the open-source code in our GitHub repository) that will allow implementation of subsampled open-reference OTU picking independently of QIIME (e.g., in a compiled programming language, where runtimes should be further reduced). Our analyses should generalize to other implementations of these OTU picking algorithms. Finally, we present a comparison of parameter settings in QIIME's OTU picking workflows and

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

Directory of Open Access Journals (Sweden)

Jai Ram Rideout

2014-08-01

Full Text Available We present a performance-optimized algorithm, subsampled open-reference OTU picking, for assigning marker gene (e.g., 16S rRNA sequences generated on next-generation sequencing platforms to operational taxonomic units (OTUs for microbial community analysis. This algorithm provides benefits over de novo OTU picking (clustering can be performed largely in parallel, reducing runtime and closed-reference OTU picking (all reads are clustered, not only those that match a reference database sequence with high similarity. Because more of our algorithm can be run in parallel relative to “classic” open-reference OTU picking, it makes open-reference OTU picking tractable on massive amplicon sequence data sets (though on smaller data sets, “classic” open-reference OTU clustering is often faster. We illustrate that here by applying it to the first 15,000 samples sequenced for the Earth Microbiome Project (1.3 billion V4 16S rRNA amplicons. To the best of our knowledge, this is the largest OTU picking run ever performed, and we estimate that our new algorithm runs in less than 1/5 the time than would be required of “classic” open reference OTU picking. We show that subsampled open-reference OTU picking yields results that are highly correlated with those generated by “classic” open-reference OTU picking through comparisons on three well-studied datasets. An implementation of this algorithm is provided in the popular QIIME software package, which uses uclust for read clustering. All analyses were performed using QIIME’s uclust wrappers, though we provide details (aided by the open-source code in our GitHub repository that will allow implementation of subsampled open-reference OTU picking independently of QIIME (e.g., in a compiled programming language, where runtimes should be further reduced. Our analyses should generalize to other implementations of these OTU picking algorithms. Finally, we present a comparison of parameter settings in

Application of Logic to Integer Sequences: A Survey

Science.gov (United States)

Makowsky, Johann A.

Chomsky and Schützenberger showed in 1963 that the sequence d L (n), which counts the number of words of a given length n in a regular language L, satisfies a linear recurrence relation with constant coefficients for n, or equivalently, the generating function g_L(x)=sumn d_L(n) x^n is a rational function. In this talk we survey results concerning sequences a(n) of natural numbers which satisfy linear recurrence relations over ℤ or ℤ m , and

A Deep X-ray Survey of the Globular Cluster Omega Centauri

Science.gov (United States)

Henleywillis, Simon; Cool, Adrienne M.; Haggard, Daryl; Heinke, Craig; Callanan, Paul; Zhao, Yue

2018-03-01

We identify 233 X-ray sources, of which 95 are new, in a 222 ks exposure of Omega Centauri with the Chandra X-ray Observatory's ACIS-I detector. The limiting unabsorbed flux in the core is fX(0.5-6.0 keV) ≃ 3×10-16 erg s-1 cm-2 (Lx ≃ 1×1030 erg s-1 at 5.2 kpc). We estimate that ˜60 ± 20 of these are cluster members, of which ˜30 lie within the core (rc = 155 arcsec), and another ˜30 between 1-2 core radii. We identify four new optical counterparts, for a total of 45 likely identifications. Probable cluster members include 18 cataclysmic variables (CVs) and CV candidates, one quiescent low-mass X-ray binary, four variable stars, and five stars that are either associated with ω Cen's anomalous red giant branch, or are sub-subgiants. We estimate that the cluster contains 40 ± 10 CVs with Lx > 1031 erg s-1, confirming that CVs are underabundant in ω Cen relative to the field. Intrinsic absorption is required to fit X-ray spectra of six of the nine brightest CVs, suggesting magnetic CVs, or high-inclination systems. Though no radio millisecond pulsars (MSPs) are currently known in ω Cen, more than 30 unidentified sources have luminosities and X-ray colours like those of MSPs found in other globular clusters; these could be responsible for the Fermi-detected gamma-ray emission from the cluster. Finally, we identify a CH star as the counterpart to the second-brightest X-ray source in the cluster and argue that it is a symbiotic star. This is the first such giant/white dwarf binary to be identified in a globular cluster.

Distribution of Prochlorococcus Ecotypes in the Red Sea Basin Based on Analyses of rpoC1 Sequences

KAUST Repository

Shibl, Ahmed A.; Haroon, Mohamed; Ngugi, David; Thompson, Luke R.; Stingl, Ulrich

2016-01-01

The marine picocyanobacteria Prochlorococcus represent a significant fraction of the global pelagic bacterioplankton community. Specifically, in the surface waters of the Red Sea, they account for around 91% of the phylum Cyanobacteria. Previous work suggested a widespread presence of high-light (HL)-adapted ecotypes in the Red Sea with the occurrence of low-light (LL)-adapted ecotypes at intermediate depths in the water column. To obtain a more comprehensive dataset over a wider biogeographical scope, we used a 454-pyrosequencing approach to analyze the diversity of the Prochlorococcus rpoC1 gene from a total of 113 samples at various depths (up to 500 m) from 45 stations spanning the Red Sea basin from north to south. In addition, we analyzed 45 metagenomes from eight stations using hidden Markov models based on a set of reference Prochlorococcus genomes to (1) estimate the relative abundance of Prochlorococcus based on 16S rRNA gene sequences, and (2) identify and classify rpoC1 sequences as an assessment of the community structure of Prochlorococcus in the northern, central and southern regions of the basin without amplification bias. Analyses of metagenomic data indicated that Prochlorococcus occurs at a relative abundance of around 9% in samples from surface waters (25, 50, 75 m), 3% in intermediate waters (100 m) and around 0.5% in deep-water samples (200–500 m). Results based on rpoC1 sequences using both methods showed that HL II cells dominate surface waters and were also present in deep-water samples. Prochlorococcus communities in intermediate waters (100 m) showed a higher diversity and co-occurrence of low-light and high-light ecotypes. Prochlorococcus communities at each depth range (surface, intermediate, deep sea) did not change significantly over the sampled transects spanning most of the Saudi waters in the Red Sea. Statistical analyses of rpoC1 sequences from metagenomes indicated that the vertical distribution of Prochlorococcus in the water

Distribution of Prochlorococcus Ecotypes in the Red Sea Basin Based on Analyses of rpoC1 Sequences

KAUST Repository

Shibl, Ahmed A.

2016-06-25

The marine picocyanobacteria Prochlorococcus represent a significant fraction of the global pelagic bacterioplankton community. Specifically, in the surface waters of the Red Sea, they account for around 91% of the phylum Cyanobacteria. Previous work suggested a widespread presence of high-light (HL)-adapted ecotypes in the Red Sea with the occurrence of low-light (LL)-adapted ecotypes at intermediate depths in the water column. To obtain a more comprehensive dataset over a wider biogeographical scope, we used a 454-pyrosequencing approach to analyze the diversity of the Prochlorococcus rpoC1 gene from a total of 113 samples at various depths (up to 500 m) from 45 stations spanning the Red Sea basin from north to south. In addition, we analyzed 45 metagenomes from eight stations using hidden Markov models based on a set of reference Prochlorococcus genomes to (1) estimate the relative abundance of Prochlorococcus based on 16S rRNA gene sequences, and (2) identify and classify rpoC1 sequences as an assessment of the community structure of Prochlorococcus in the northern, central and southern regions of the basin without amplification bias. Analyses of metagenomic data indicated that Prochlorococcus occurs at a relative abundance of around 9% in samples from surface waters (25, 50, 75 m), 3% in intermediate waters (100 m) and around 0.5% in deep-water samples (200–500 m). Results based on rpoC1 sequences using both methods showed that HL II cells dominate surface waters and were also present in deep-water samples. Prochlorococcus communities in intermediate waters (100 m) showed a higher diversity and co-occurrence of low-light and high-light ecotypes. Prochlorococcus communities at each depth range (surface, intermediate, deep sea) did not change significantly over the sampled transects spanning most of the Saudi waters in the Red Sea. Statistical analyses of rpoC1 sequences from metagenomes indicated that the vertical distribution of Prochlorococcus in the water

The Splashback Feature around DES Galaxy Clusters: Galaxy Density and Weak Lensing Profiles

Energy Technology Data Exchange (ETDEWEB)

Chang, Chihway; et al.

2017-10-18

Splashback refers to the process of matter that is accreting onto a dark matter halo reaching its first orbital apocenter and turning around in its orbit. The cluster-centric radius at which this process occurs, r_sp, defines a halo boundary that is connected to the dynamics of the cluster, in contrast with other common halo boundary definitions such as R_200. A rapid decline in the matter density profile of the halo is expected near r_sp. We measure the galaxy number density and weak lensing mass profiles around RedMapper galaxy clusters in the first year Dark Energy Survey (DES) data. For a cluster sample with mean mass ~2.5 x 10^14 solar masses, we find strong evidence of a splashback-like steepening of the galaxy density profile and measure r_sp=1.16 +/- 0.08 Mpc/h, consistent with earlier SDSS measurements of More et al. (2016) and Baxter et al. (2017). Moreover, our weak lensing measurement demonstrates for the first time the existence of a splashback-like steepening of the matter profile of galaxy clusters. We measure r_sp=1.28 +/- 0.18 Mpc/h from the weak lensing data, in good agreement with our galaxy density measurements. Applying our analysis to different cluster and galaxy samples, we find that consistent with LambdaCDM simulations, r_sp scales with R_200m and does not evolve with redshift over the redshift range of 0.3--0.6. We also find that potential systematic effects associated with the RedMapper algorithm may impact the location of r_sp, in particular the choice of scale used to estimate cluster richness. We discuss progress needed to understand the systematic uncertainties and fully exploit forthcoming data from DES and future surveys, emphasizing the importance of more realistic mock catalogs and independent cluster samples.

OPEN CLUSTERS IN THE MILKY WAY OUTER DISK: NEWLY DISCOVERED AND UNSTUDIED CLUSTERS IN THE SPITZER GLIMPSE-360, CYG-X, AND SMOG SURVEYS

International Nuclear Information System (INIS)

Zasowski, G.; Beaton, R. L.; Hamm, K. K.; Majewski, S. R.; Patterson, R. J.; Babler, B.; Churchwell, E.; Meade, M.; Whitney, B. A.; Benjamin, R. A.; Watson, C.

2013-01-01

Open stellar clusters are extremely valuable probes of Galactic structure, star formation, kinematics, and chemical abundance patterns. Near-infrared (NIR) data have enabled the detection of hundreds of clusters hidden from optical surveys, and mid-infrared (MIR) data are poised to offer an even clearer view into the most heavily obscured parts of the Milky Way. We use new MIR images from the Spitzer GLIMPSE-360, Cyg-X, and SMOG surveys to visually identify a large number of open cluster candidates in the outer disk of the Milky Way (65° < l < 265°). Using NIR color-magnitude diagrams, stellar isochrones, and stellar reddening estimates, we derive cluster parameters (metallicity, distance, reddening) for those objects without previous identification and/or parameters in the literature. In total, we present coordinates and sizes of 20 previously unknown open cluster candidates; for 7 of these we also present metallicity, distance, and reddening values. In addition, we provide the first estimates of these values for nine clusters that had been previously cataloged. We compare our cluster sizes and other derived parameters to those in the open cluster catalog of Dias et al. and find strong similarities except for a higher mean reddening for our objects, which signifies our increased detection sensitivity in regions of high extinction. The results of this cluster search and analysis demonstrate the ability of MIR imaging and photometry to augment significantly the current census of open clusters in the Galaxy

The HST/ACS Coma Cluster Survey : II. Data Description and Source Catalogs

NARCIS (Netherlands)

Hammer, Derek; Kleijn, Gijs Verdoes; Hoyos, Carlos; den Brok, Mark; Balcells, Marc; Ferguson, Henry C.; Goudfrooij, Paul; Carter, David; Guzman, Rafael; Peletier, Reynier F.; Smith, Russell J.; Graham, Alister W.; Trentham, Neil; Peng, Eric; Puzia, Thomas H.; Lucey, John R.; Jogee, Shardha; Aguerri, Alfonso L.; Batcheldor, Dan; Bridges, Terry J.; Chiboucas, Kristin; Davies, Jonathan I.; del Burgo, Carlos; Erwin, Peter; Hornschemeier, Ann; Hudson, Michael J.; Huxor, Avon; Jenkins, Leigh; Karick, Arna; Khosroshahi, Habib; Kourkchi, Ehsan; Komiyama, Yutaka; Lotz, Jennifer; Marzke, Ronald O.; Marinova, Irina; Matkovic, Ana; Merritt, David; Miller, Bryan W.; Miller, Neal A.; Mobasher, Bahram; Mouhcine, Mustapha; Okamura, Sadanori; Percival, Sue; Phillipps, Steven; Poggianti, Bianca M.; Price, James; Sharples, Ray M.; Tully, R. Brent; Valentijn, Edwin

The Coma cluster, Abell 1656, was the target of an HST-ACS Treasury program designed for deep imaging in the F475W and F814W passbands. Although our survey was interrupted by the ACS instrument failure in early 2007, the partially completed survey still covers ~50% of the core high-density region in

Evolution of cluster X-ray luminosities and radii: Results from the 160 square degree rosat survey

DEFF Research Database (Denmark)

Vikhlinin, A.; McNamara, B.R.; Forman, W.

1998-01-01

We searched for cluster X-ray luminosity and radius evolution using our sample of 203 galaxy clusters detected in the 160 deg(2) survey with the ROSAT PSPC (Vikhlinin et al.). With such a large area survey, it is possible, for the first time with ROSAT, to test the evolution of luminous clusters, L......-X > 3 x 10(44) ergs s(-1) in the 0.5-2 keV band. We detect a factor of 3-4 deficit of such luminous clusters at z > 0.3 compared with the present. The evolution is much weaker or absent at modestly lower luminosities, (1-3) x 10(44) ergs s(-1). At still lower luminosities, we find no evolution from...... the analysis of the log N-log S relation. The results in the two upper L, bins are in agreement with the Einstein Extended Medium-Sensitivity Survey evolution result (Gioia et al.; Henry ct al.), which was obtained using a completely independent cluster sample. The low-L-X results are in agreement with other...

TreeCluster: Massively scalable transmission clustering using phylogenetic trees

OpenAIRE

Moshiri, Alexander

2018-01-01

Background: The ability to infer transmission clusters from molecular data is critical to designing and evaluating viral control strategies. Viral sequencing datasets are growing rapidly, but standard methods of transmission cluster inference do not scale well beyond thousands of sequences. Results: I present TreeCluster, a cross-platform tool that performs transmission cluster inference on a given phylogenetic tree orders of magnitude faster than existing inference methods and supports multi...

Substructures in DAFT/FADA survey clusters based on XMM and optical data

Science.gov (United States)

Durret, F.; DAFT/FADA Team

2014-07-01

The DAFT/FADA survey was initiated to perform weak lensing tomography on a sample of 90 massive clusters in the redshift range [0.4,0.9] with HST imaging available. The complementary deep multiband imaging constitutes a high quality imaging data base for these clusters. In X-rays, we have analysed the XMM-Newton and/or Chandra data available for 32 clusters, and for 23 clusters we fit the X-ray emissivity with a beta-model and subtract it to search for substructures in the X-ray gas. This study was coupled with a dynamical analysis for the 18 clusters with at least 15 spectroscopic galaxy redshifts in the cluster range, based on a Serna & Gerbal (SG) analysis. We detected ten substructures in eight clusters by both methods (X-rays and SG). The percentage of mass included in substructures is found to be roughly constant with redshift, with values of 5-15%. Most of the substructures detected both in X-rays and with the SG method are found to be relatively recent infalls, probably at their first cluster pericenter approach.

Main sequences defined by Hyades and field stars

International Nuclear Information System (INIS)

Upgren, A.R.

1978-01-01

The author reviews the main sequences defined by members of the Hyades cluster and by the field stars in the solar neighborhood. For this purpose, the discussion is limited primarily to the stars of the lower portions of the main sequence, especially those of spectral classes K and early M. There are two reasons for emphasis on the faint red dwarf stars. First, the value of a parallax depends on its size or, more accurately, on the error in parallax divided by the parallax itself. Large parallaxes of high precision occur in large numbers only for stars inhabiting the lower main sequence. Furthermore, brighter stars of earlier spectral classes are more likely to be influenced by evolutionary effects which may differ between the Hyades and field stars, and which are difficult to calibrate. (Auth.)

Source selection for cluster weak lensing measurements in the Hyper Suprime-Cam survey

Science.gov (United States)

Medezinski, Elinor; Oguri, Masamune; Nishizawa, Atsushi J.; Speagle, Joshua S.; Miyatake, Hironao; Umetsu, Keiichi; Leauthaud, Alexie; Murata, Ryoma; Mandelbaum, Rachel; Sifón, Cristóbal; Strauss, Michael A.; Huang, Song; Simet, Melanie; Okabe, Nobuhiro; Tanaka, Masayuki; Komiyama, Yutaka

2018-03-01

We present optimized source galaxy selection schemes for measuring cluster weak lensing (WL) mass profiles unaffected by cluster member dilution from the Subaru Hyper Suprime-Cam Strategic Survey Program (HSC-SSP). The ongoing HSC-SSP survey will uncover thousands of galaxy clusters to z ≲ 1.5. In deriving cluster masses via WL, a critical source of systematics is contamination and dilution of the lensing signal by cluster members, and by foreground galaxies whose photometric redshifts are biased. Using the first-year CAMIRA catalog of ˜900 clusters with richness larger than 20 found in ˜140 deg2 of HSC-SSP data, we devise and compare several source selection methods, including selection in color-color space (CC-cut), and selection of robust photometric redshifts by applying constraints on their cumulative probability distribution function (P-cut). We examine the dependence of the contamination on the chosen limits adopted for each method. Using the proper limits, these methods give mass profiles with minimal dilution in agreement with one another. We find that not adopting either the CC-cut or P-cut methods results in an underestimation of the total cluster mass (13% ± 4%) and the concentration of the profile (24% ± 11%). The level of cluster contamination can reach as high as ˜10% at R ≈ 0.24 Mpc/h for low-z clusters without cuts, while employing either the P-cut or CC-cut results in cluster contamination consistent with zero to within the 0.5% uncertainties. Our robust methods yield a ˜60 σ detection of the stacked CAMIRA surface mass density profile, with a mean mass of M200c = [1.67 ± 0.05(stat)] × 1014 M⊙/h.

Angiostrongylus vasorum in Romania: an extensive survey in red foxes, Vulpes vulpes.

Science.gov (United States)

Deak, Georgiana; Gherman, Călin M; Ionică, Angela M; Vezendan, Alexandru D; D'Amico, Gianluca; Matei, Ioana A; Daskalaki, Aikaterini A; Marian, Ionuț; Damian, Aurel; Cozma, Vasile; Mihalca, Andrei D

2017-07-12

Angiostrongylus vasorum is the causative agent of canine angiostrongylosis, a severe snail-borne disease of dogs. Red foxes are important natural reservoirs of infection, and surveys of foxes provide a more objective picture of the parasite distribution. Our aim was to investigate the possibility of the presence of A. vasorum in red foxes from the western part of Romania and to analyse the risk factors related to the sex, age and geographic origin of the foxes. Between July 2016 and April 2017, 567 hunted red foxes from 10 counties of western Romania were examined by necropsy for the presence of lungworms. Overall, the infection with A. vasorum has been found in 24 red foxes (4.2%) originating in four counties (Mureș, Hunedoara, Sălaj and Cluj). There was no significant difference between the prevalence in males and females, between juveniles and adults and between counties. This is the first report of autochthonous infections of A. vasorum in Romania, showing a relatively low prevalence and extending eastwards the known distributional range of this parasite in Europe. The presence of autochthonous cases in domestic dogs in Romania remains to be confirmed by further studies.

Constraints on the Mass–Richness Relation from the Abundance and Weak Lensing of SDSS Clusters

Science.gov (United States)

Murata, Ryoma; Nishimichi, Takahiro; Takada, Masahiro; Miyatake, Hironao; Shirasaki, Masato; More, Surhud; Takahashi, Ryuichi; Osato, Ken

2018-02-01

We constrain the scaling relation between optical richness (λ) and halo mass (M) for a sample of Sloan Digital Sky Survey (SDSS) red-sequence Matched-filter Probabilistic Percolation (redMaPPer) galaxy clusters within the context of the Planck cosmological model. We use a forward modeling approach where we model the probability distribution of optical richness for a given mass, P({ln}λ | M). To model the abundance and the stacked lensing profiles, we use an emulator specifically built to interpolate the halo mass function and the stacked lensing profile for an arbitrary set of halo mass and redshift, which is calibrated based on a suite of high-resolution N-body simulations. We apply our method to 8312 SDSS redMaPPer clusters with 20 ≤ λ ≤ 100 and 0.10 ≤ z λ ≤ 0.33 and show that the lognormal distribution model for P(λ | M), with four free parameters, well reproduces the measured abundances and lensing profiles simultaneously. The constraints are characterized by the mean relation, (M)=A+B{ln}(M/{M}pivot}), with A={3.207}-0.046+0.044 and B={0.993}-0.055+0.041 (68% CL), where the pivot mass scale M pivot = 3 × 1014 h ‑1 M ⊙, and the scatter {σ }lnλ | M}={σ }0+q{ln}(M/{M}pivot}) with {σ }0={0.456}-0.039+0.047 and q=-{0.169}-0.026+0.035. We find that a large scatter in halo masses is required at the lowest-richness bins (20 ≤ λ ≲ 30) in order to reproduce the measurements. Without such a large scatter, the model prediction for the lensing profiles tends to overestimate the measured amplitudes. This might imply a possible contamination of intrinsically low-richness clusters due to the projection effects. Such a low-mass halo contribution is significantly reduced when applying our method to the sample of 30 ≤ λ ≤ 100.

The cosmological analysis of X-ray cluster surveys - I. A new method for interpreting number counts

Science.gov (United States)

Clerc, N.; Pierre, M.; Pacaud, F.; Sadibekova, T.

2012-07-01

We present a new method aimed at simplifying the cosmological analysis of X-ray cluster surveys. It is based on purely instrumental observable quantities considered in a two-dimensional X-ray colour-magnitude diagram (hardness ratio versus count rate). The basic principle is that even in rather shallow surveys, substantial information on cluster redshift and temperature is present in the raw X-ray data and can be statistically extracted; in parallel, such diagrams can be readily predicted from an ab initio cosmological modelling. We illustrate the methodology for the case of a 100-deg2XMM survey having a sensitivity of ˜10-14 erg s-1 cm-2 and fit at the same time, the survey selection function, the cluster evolutionary scaling relations and the cosmology; our sole assumption - driven by the limited size of the sample considered in the case study - is that the local cluster scaling relations are known. We devote special attention to the realistic modelling of the count-rate measurement uncertainties and evaluate the potential of the method via a Fisher analysis. In the absence of individual cluster redshifts, the count rate and hardness ratio (CR-HR) method appears to be much more efficient than the traditional approach based on cluster counts (i.e. dn/dz, requiring redshifts). In the case where redshifts are available, our method performs similar to the traditional mass function (dn/dM/dz) for the purely cosmological parameters, but constrains better parameters defining the cluster scaling relations and their evolution. A further practical advantage of the CR-HR method is its simplicity: this fully top-down approach totally bypasses the tedious steps consisting in deriving cluster masses from X-ray temperature measurements.

The GALAH survey: chemical tagging of star clusters and new members in the Pleiades

Science.gov (United States)

Kos, Janez; Bland-Hawthorn, Joss; Freeman, Ken; Buder, Sven; Traven, Gregor; De Silva, Gayandhi M.; Sharma, Sanjib; Asplund, Martin; Duong, Ly; Lin, Jane; Lind, Karin; Martell, Sarah; Simpson, Jeffrey D.; Stello, Dennis; Zucker, Daniel B.; Zwitter, Tomaž; Anguiano, Borja; Da Costa, Gary; D'Orazi, Valentina; Horner, Jonathan; Kafle, Prajwal R.; Lewis, Geraint; Munari, Ulisse; Nataf, David M.; Ness, Melissa; Reid, Warren; Schlesinger, Katie; Ting, Yuan-Sen; Wyse, Rosemary

2018-02-01

The technique of chemical tagging uses the elemental abundances of stellar atmospheres to 'reconstruct' chemically homogeneous star clusters that have long since dispersed. The GALAH spectroscopic survey - which aims to observe one million stars using the Anglo-Australian Telescope - allows us to measure up to 30 elements or dimensions in the stellar chemical abundance space, many of which are not independent. How to find clustering reliably in a noisy high-dimensional space is a difficult problem that remains largely unsolved. Here, we explore t-distributed stochastic neighbour embedding (t-SNE) - which identifies an optimal mapping of a high-dimensional space into fewer dimensions - whilst conserving the original clustering information. Typically, the projection is made to a 2D space to aid recognition of clusters by eye. We show that this method is a reliable tool for chemical tagging because it can: (i) resolve clustering in chemical space alone, (ii) recover known open and globular clusters with high efficiency and low contamination, and (iii) relate field stars to known clusters. t-SNE also provides a useful visualization of a high-dimensional space. We demonstrate the method on a data set of 13 abundances measured in the spectra of 187 000 stars by the GALAH survey. We recover seven of the nine observed clusters (six globular and three open clusters) in chemical space with minimal contamination from field stars and low numbers of outliers. With chemical tagging, we also identify two Pleiades supercluster members (which we confirm kinematically), one as far as 6° - one tidal radius away from the cluster centre.

Microsatellite DNA in genomic survey sequences and UniGenes of loblolly pine

Science.gov (United States)

Craig S Echt; Surya Saha; Dennis L Deemer; C Dana Nelson

2011-01-01

Genomic DNA sequence databases are a potential and growing resource for simple sequence repeat (SSR) marker development in loblolly pine (Pinus taeda L.). Loblolly pine also has many expressed sequence tags (ESTs) available for microsatellite (SSR) marker development. We compared loblolly pine SSR densities in genome survey sequences (GSSs) to those in non-redundant...

CLUSTOM-CLOUD: In-Memory Data Grid-Based Software for Clustering 16S rRNA Sequence Data in the Cloud Environment.

Directory of Open Access Journals (Sweden)

Jeongsu Oh

Full Text Available High-throughput sequencing can produce hundreds of thousands of 16S rRNA sequence reads corresponding to different organisms present in the environmental samples. Typically, analysis of microbial diversity in bioinformatics starts from pre-processing followed by clustering 16S rRNA reads into relatively fewer operational taxonomic units (OTUs. The OTUs are reliable indicators of microbial diversity and greatly accelerate the downstream analysis time. However, existing hierarchical clustering algorithms that are generally more accurate than greedy heuristic algorithms struggle with large sequence datasets. To keep pace with the rapid rise in sequencing data, we present CLUSTOM-CLOUD, which is the first distributed sequence clustering program based on In-Memory Data Grid (IMDG technology-a distributed data structure to store all data in the main memory of multiple computing nodes. The IMDG technology helps CLUSTOM-CLOUD to enhance both its capability of handling larger datasets and its computational scalability better than its ancestor, CLUSTOM, while maintaining high accuracy. Clustering speed of CLUSTOM-CLOUD was evaluated on published 16S rRNA human microbiome sequence datasets using the small laboratory cluster (10 nodes and under the Amazon EC2 cloud-computing environments. Under the laboratory environment, it required only ~3 hours to process dataset of size 200 K reads regardless of the complexity of the human microbiome data. In turn, one million reads were processed in approximately 20, 14, and 11 hours when utilizing 20, 30, and 40 nodes on the Amazon EC2 cloud-computing environment. The running time evaluation indicates that CLUSTOM-CLOUD can handle much larger sequence datasets than CLUSTOM and is also a scalable distributed processing system. The comparative accuracy test using 16S rRNA pyrosequences of a mock community shows that CLUSTOM-CLOUD achieves higher accuracy than DOTUR, mothur, ESPRIT-Tree, UCLUST and Swarm. CLUSTOM

CLUSTOM-CLOUD: In-Memory Data Grid-Based Software for Clustering 16S rRNA Sequence Data in the Cloud Environment.

Science.gov (United States)

Oh, Jeongsu; Choi, Chi-Hwan; Park, Min-Kyu; Kim, Byung Kwon; Hwang, Kyuin; Lee, Sang-Heon; Hong, Soon Gyu; Nasir, Arshan; Cho, Wan-Sup; Kim, Kyung Mo

2016-01-01

High-throughput sequencing can produce hundreds of thousands of 16S rRNA sequence reads corresponding to different organisms present in the environmental samples. Typically, analysis of microbial diversity in bioinformatics starts from pre-processing followed by clustering 16S rRNA reads into relatively fewer operational taxonomic units (OTUs). The OTUs are reliable indicators of microbial diversity and greatly accelerate the downstream analysis time. However, existing hierarchical clustering algorithms that are generally more accurate than greedy heuristic algorithms struggle with large sequence datasets. To keep pace with the rapid rise in sequencing data, we present CLUSTOM-CLOUD, which is the first distributed sequence clustering program based on In-Memory Data Grid (IMDG) technology-a distributed data structure to store all data in the main memory of multiple computing nodes. The IMDG technology helps CLUSTOM-CLOUD to enhance both its capability of handling larger datasets and its computational scalability better than its ancestor, CLUSTOM, while maintaining high accuracy. Clustering speed of CLUSTOM-CLOUD was evaluated on published 16S rRNA human microbiome sequence datasets using the small laboratory cluster (10 nodes) and under the Amazon EC2 cloud-computing environments. Under the laboratory environment, it required only ~3 hours to process dataset of size 200 K reads regardless of the complexity of the human microbiome data. In turn, one million reads were processed in approximately 20, 14, and 11 hours when utilizing 20, 30, and 40 nodes on the Amazon EC2 cloud-computing environment. The running time evaluation indicates that CLUSTOM-CLOUD can handle much larger sequence datasets than CLUSTOM and is also a scalable distributed processing system. The comparative accuracy test using 16S rRNA pyrosequences of a mock community shows that CLUSTOM-CLOUD achieves higher accuracy than DOTUR, mothur, ESPRIT-Tree, UCLUST and Swarm. CLUSTOM-CLOUD is written in JAVA

CLUSTOM-CLOUD: In-Memory Data Grid-Based Software for Clustering 16S rRNA Sequence Data in the Cloud Environment

Science.gov (United States)

Park, Min-Kyu; Kim, Byung Kwon; Hwang, Kyuin; Lee, Sang-Heon; Hong, Soon Gyu; Nasir, Arshan; Cho, Wan-Sup; Kim, Kyung Mo

2016-01-01

High-throughput sequencing can produce hundreds of thousands of 16S rRNA sequence reads corresponding to different organisms present in the environmental samples. Typically, analysis of microbial diversity in bioinformatics starts from pre-processing followed by clustering 16S rRNA reads into relatively fewer operational taxonomic units (OTUs). The OTUs are reliable indicators of microbial diversity and greatly accelerate the downstream analysis time. However, existing hierarchical clustering algorithms that are generally more accurate than greedy heuristic algorithms struggle with large sequence datasets. To keep pace with the rapid rise in sequencing data, we present CLUSTOM-CLOUD, which is the first distributed sequence clustering program based on In-Memory Data Grid (IMDG) technology–a distributed data structure to store all data in the main memory of multiple computing nodes. The IMDG technology helps CLUSTOM-CLOUD to enhance both its capability of handling larger datasets and its computational scalability better than its ancestor, CLUSTOM, while maintaining high accuracy. Clustering speed of CLUSTOM-CLOUD was evaluated on published 16S rRNA human microbiome sequence datasets using the small laboratory cluster (10 nodes) and under the Amazon EC2 cloud-computing environments. Under the laboratory environment, it required only ~3 hours to process dataset of size 200 K reads regardless of the complexity of the human microbiome data. In turn, one million reads were processed in approximately 20, 14, and 11 hours when utilizing 20, 30, and 40 nodes on the Amazon EC2 cloud-computing environment. The running time evaluation indicates that CLUSTOM-CLOUD can handle much larger sequence datasets than CLUSTOM and is also a scalable distributed processing system. The comparative accuracy test using 16S rRNA pyrosequences of a mock community shows that CLUSTOM-CLOUD achieves higher accuracy than DOTUR, mothur, ESPRIT-Tree, UCLUST and Swarm. CLUSTOM-CLOUD is written in

Too Little, Too Late: How the Tidal Evolution of Hot Jupiters Affects Transit Surveys of Clusters

Science.gov (United States)

Debes, John H.; Jackson, Brian

2010-01-01

The tidal evolution of hot Jupiters may change the efficiency of transit surveys of stellar clusters. The orbital decay that hot Jupiters suffer may result in their destruction, leaving fewer transiting planets in older clusters. We calculate the impact tidal evolution has for different assumed stellar populations, including that of 47 Tuc, a globular cluster that was the focus of an intense HST search for transits. We find that in older clusters one expects to detect fewer transiting planets by a factor of two for surveys sensitive to Jupiter-like planets in orbits out to 0.5 AU, and up to a factor of 25 for surveys sensitive to Jupiter-like planets in orbits out to 0.08 AU. Additionally, tidal evolution affects the distribution of transiting planets as a function of semi-major axis, producing larger orbital period gaps for transiting planets as the age of the cluster increases. Tidal evolution can explain the lack of detected exoplanets in 47 Tuc without invoking other mechanisms. Four open clusters residing within the Kepler fields of view have ages that span 0.4-8 Gyr-if Kepler can observe a significant number of planets in these clusters, it will provide key tests for our tidal evolution hypothesis. Finally, our results suggest that observers wishing to discover transiting planets in clusters must have sufficient accuracy to detect lower mass planets, search larger numbers of cluster members, or have longer observation windows to be confident that a significant number of transits will occur for a population of stars.

Red, green, blue equals 1, 2, 3: Digit-color synesthetes can use structured digit information to boost recall of color sequences.

Science.gov (United States)

Teichmann, A Lina; Nieuwenstein, Mark R; Rich, Anina N

2015-01-01

Digit-color synesthetes report experiencing colors when perceiving letters and digits. The conscious experience is typically unidirectional (e.g., digits elicit colors but not vice versa) but recent evidence shows subtle bidirectional effects. We examined whether short-term memory for colors could be affected by the order of presentation reflecting more or less structure in the associated digits. We presented a stream of colored squares and asked participants to report the colors in order. The colors matched each synesthete's colors for digits 1-9 and the order of the colors corresponded either to a sequence of numbers (e.g., [red, green, blue] if 1 = red, 2 = green, 3 = blue) or no systematic sequence. The results showed that synesthetes recalled sequential color sequences more accurately than pseudo-randomized colors, whereas no such effect was found for the non-synesthetic controls. Synesthetes did not differ from non-synesthetic controls in recall of color sequences overall, providing no evidence of a general advantage in memory for serial recall of colors.

In silico exploration of Red Sea Bacillus genomes for natural product biosynthetic gene clusters

KAUST Repository

Othoum, Ghofran K

2018-05-22

BackgroundThe increasing spectrum of multidrug-resistant bacteria is a major global public health concern, necessitating discovery of novel antimicrobial agents. Here, members of the genus Bacillus are investigated as a potentially attractive source of novel antibiotics due to their broad spectrum of antimicrobial activities. We specifically focus on a computational analysis of the distinctive biosynthetic potential of Bacillus paralicheniformis strains isolated from the Red Sea, an ecosystem exposed to adverse, highly saline and hot conditions.ResultsWe report the complete circular and annotated genomes of two Red Sea strains, B. paralicheniformis Bac48 isolated from mangrove mud and B. paralicheniformis Bac84 isolated from microbial mat collected from Rabigh Harbor Lagoon in Saudi Arabia. Comparing the genomes of B. paralicheniformis Bac48 and B. paralicheniformis Bac84 with nine publicly available complete genomes of B. licheniformis and three genomes of B. paralicheniformis, revealed that all of the B. paralicheniformis strains in this study are more enriched in nonribosomal peptides (NRPs). We further report the first computationally identified trans-acyltransferase (trans-AT) nonribosomal peptide synthetase/polyketide synthase (PKS/ NRPS) cluster in strains of this species.ConclusionsB. paralicheniformis species have more genes associated with biosynthesis of antimicrobial bioactive compounds than other previously characterized species of B. licheniformis, which suggests that these species are better potential sources for novel antibiotics. Moreover, the genome of the Red Sea strain B. paralicheniformis Bac48 is more enriched in modular PKS genes compared to B. licheniformis strains and other B. paralicheniformis strains. This may be linked to adaptations that strains surviving in the Red Sea underwent to survive in the relatively hot and saline ecosystems.

Cluster Mass Calibration at High Redshift: HST Weak Lensing Analysis of 13 Distant Galaxy Clusters from the South Pole Telescope Sunyaev-Zel’dovich Survey

Energy Technology Data Exchange (ETDEWEB)

Schrabback, T.; Applegate, D.; Dietrich, J. P.; Hoekstra, H.; Bocquet, S.; Gonzalez, A. H.; der Linden, A. von; McDonald, M.; Morrison, C. B.; Raihan, S. F.; Allen, S. W.; Bayliss, M.; Benson, B. A.; Bleem, L. E.; Chiu, I.; Desai, S.; Foley, R. J.; de Haan, T.; High, F. W.; Hilbert, S.; Mantz, A. B.; Massey, R.; Mohr, J.; Reichardt, C. L.; Saro, A.; Simon, P.; Stern, C.; Stubbs, C. W.; Zenteno, A.

2017-10-14

We present an HST/Advanced Camera for Surveys (ACS) weak gravitational lensing analysis of 13 massive high-redshift (z(median) = 0.88) galaxy clusters discovered in the South Pole Telescope (SPT) Sunyaev-Zel'dovich Survey. This study is part of a larger campaign that aims to robustly calibrate mass-observable scaling relations over a wide range in redshift to enable improved cosmological constraints from the SPT cluster sample. We introduce new strategies to ensure that systematics in the lensing analysis do not degrade constraints on cluster scaling relations significantly. First, we efficiently remove cluster members from the source sample by selecting very blue galaxies in V - I colour. Our estimate of the source redshift distribution is based on Cosmic Assembly Near-infrared Deep Extragalactic Legacy Survey (CANDELS) data, where we carefully mimic the source selection criteria of the cluster fields. We apply a statistical correction for systematic photometric redshift errors as derived from Hubble Ultra Deep Field data and verified through spatial cross-correlations. We account for the impact of lensing magnification on the source redshift distribution, finding that this is particularly relevant for shallower surveys. Finally, we account for biases in the mass modelling caused by miscentring and uncertainties in the concentration-mass relation using simulations. In combination with temperature estimates from Chandra we constrain the normalization of the mass-temperature scaling relation ln (E(z) M-500c/10(14)M(circle dot)) = A + 1.5ln (kT/7.2 keV) to A = 1.81(-0.14)(+0.24)(stat.)+/- 0.09(sys.), consistent with self-similar redshift evolution when compared to lower redshift samples. Additionally, the lensing data constrain the average concentration of the clusters to c(200c) = 5.6(-1.8)(+3.7).

Cluster mass calibration at high redshift: HST weak lensing analysis of 13 distant galaxy clusters from the South Pole Telescope Sunyaev-Zel'dovich Survey

Science.gov (United States)

Schrabback, T.; Applegate, D.; Dietrich, J. P.; Hoekstra, H.; Bocquet, S.; Gonzalez, A. H.; von der Linden, A.; McDonald, M.; Morrison, C. B.; Raihan, S. F.; Allen, S. W.; Bayliss, M.; Benson, B. A.; Bleem, L. E.; Chiu, I.; Desai, S.; Foley, R. J.; de Haan, T.; High, F. W.; Hilbert, S.; Mantz, A. B.; Massey, R.; Mohr, J.; Reichardt, C. L.; Saro, A.; Simon, P.; Stern, C.; Stubbs, C. W.; Zenteno, A.

2018-02-01

We present an HST/Advanced Camera for Surveys (ACS) weak gravitational lensing analysis of 13 massive high-redshift (zmedian = 0.88) galaxy clusters discovered in the South Pole Telescope (SPT) Sunyaev-Zel'dovich Survey. This study is part of a larger campaign that aims to robustly calibrate mass-observable scaling relations over a wide range in redshift to enable improved cosmological constraints from the SPT cluster sample. We introduce new strategies to ensure that systematics in the lensing analysis do not degrade constraints on cluster scaling relations significantly. First, we efficiently remove cluster members from the source sample by selecting very blue galaxies in V - I colour. Our estimate of the source redshift distribution is based on Cosmic Assembly Near-infrared Deep Extragalactic Legacy Survey (CANDELS) data, where we carefully mimic the source selection criteria of the cluster fields. We apply a statistical correction for systematic photometric redshift errors as derived from Hubble Ultra Deep Field data and verified through spatial cross-correlations. We account for the impact of lensing magnification on the source redshift distribution, finding that this is particularly relevant for shallower surveys. Finally, we account for biases in the mass modelling caused by miscentring and uncertainties in the concentration-mass relation using simulations. In combination with temperature estimates from Chandra we constrain the normalization of the mass-temperature scaling relation ln (E(z)M500c/1014 M⊙) = A + 1.5ln (kT/7.2 keV) to A=1.81^{+0.24}_{-0.14}(stat.) {± } 0.09(sys.), consistent with self-similar redshift evolution when compared to lower redshift samples. Additionally, the lensing data constrain the average concentration of the clusters to c_200c=5.6^{+3.7}_{-1.8}.

Isolation and identification of lactic acid bacteria from fermented red dragon fruit juices.

Science.gov (United States)

Ong, Yien Yien; Tan, Wen Siang; Rosfarizan, Mohamad; Chan, Eng Seng; Tey, Beng Ti

2012-10-01

Red dragon fruit or red pitaya is rich in potassium, fiber, and antioxidants. Its nutritional properties and unique flesh color have made it an attractive raw material of various types of food products and beverages including fermented beverages or enzyme drinks. In this study, phenotypic and genotypic methods were used to confirm the identity of lactic acid bacteria (LAB) appeared in fermented red dragon fruit (Hylocereus polyrhizus) beverages. A total of 21 isolates of LAB were isolated and characterized. They belonged to the genus of Enterococcus based on their biochemical characteristics. The isolates can be clustered into two groups by using the randomly amplified polymorphic DNA method. Nucleotide sequencing and restriction fragment length polymorphism of the 16S rRNA region suggested that they were either Enterococcus faecalis or Enterococcus durans. Current research revealed the use of biochemical analyses and molecular approaches to identify the microbial population particularly lactic acid bacteria from fermented red dragon fruit juices. © 2012 Institute of Food Technologists®

The Open Cluster Chemical Abundances and Mapping (OCCAM) Survey: Detailed Age and Abundance Gradients using DR12

Science.gov (United States)

Frinchaboy, Peter M.; Thompson, Benjamin A.; O'Connell, Julia; Meyer, Brianne; Donor, John; Majewski, Steven R.; Holtzman, Jon A.; Zasowski, Gail; Beers, Timothy C.; Beaton, Rachael; Cunha, Katia M. L.; Hearty, Fred; Nidever, David L.; Schiavon, Ricardo P.; Smith, Verne V.; Hayden, Michael R.

2015-01-01

We present detailed abundance results for Galactic open clusters as part of the Open Cluster Chemical Abundances and Mapping (OCCAM) Survey, which is based primarily on data from the Sloan Digital Sky Survey/ Apache Point Observatory Galactic Evolution Experiment. Using 100 open clusters from the uniformly observed complete SDSS-III/APOGEE-1 DR12 dataset, we present age and multi-element abundance gradients for the disk of the Milky Way.This work is supported by an NSF AAG grant AST-1311835.

Mouse Nkrp1-Clr gene cluster sequence and expression analyses reveal conservation of tissue-specific MHC-independent immunosurveillance.

Directory of Open Access Journals (Sweden)

Qiang Zhang

Full Text Available The Nkrp1 (Klrb1-Clr (Clec2 genes encode a receptor-ligand system utilized by NK cells as an MHC-independent immunosurveillance strategy for innate immune responses. The related Ly49 family of MHC-I receptors displays extreme allelic polymorphism and haplotype plasticity. In contrast, previous BAC-mapping and aCGH studies in the mouse suggest the neighboring and related Nkrp1-Clr cluster is evolutionarily stable. To definitively compare the relative evolutionary rate of Nkrp1-Clr vs. Ly49 gene clusters, the Nkrp1-Clr gene clusters from two Ly49 haplotype-disparate inbred mouse strains, BALB/c and 129S6, were sequenced. Both Nkrp1-Clr gene cluster sequences are highly similar to the C57BL/6 reference sequence, displaying the same gene numbers and order, complete pseudogenes, and gene fragments. The Nkrp1-Clr clusters contain a strikingly dissimilar proportion of repetitive elements compared to the Ly49 clusters, suggesting that certain elements may be partly responsible for the highly disparate Ly49 vs. Nkrp1 evolutionary rate. Focused allelic polymorphisms were found within the Nkrp1b/d (Klrb1b, Nkrp1c (Klrb1c, and Clr-c (Clec2f genes, suggestive of possible immune selection. Cell-type specific transcription of Nkrp1-Clr genes in a large panel of tissues/organs was determined. Clr-b (Clec2d and Clr-g (Clec2i showed wide expression, while other Clr genes showed more tissue-specific expression patterns. In situ hybridization revealed specific expression of various members of the Clr family in leukocytes/hematopoietic cells of immune organs, various tissue-restricted epithelial cells (including intestinal, kidney tubular, lung, and corneal progenitor epithelial cells, as well as myocytes. In summary, the Nkrp1-Clr gene cluster appears to evolve more slowly relative to the related Ly49 cluster, and likely regulates innate immunosurveillance in a tissue-specific manner.

Convective-core Overshoot and Suppression of Oscillations: Constraints from Red Giants in NGC 6811

Energy Technology Data Exchange (ETDEWEB)

Arentoft, T.; Brogaard, K.; Jessen-Hansen, J.; Silva Aguirre, V.; Kjeldsen, H.; Mosumgaard, J. R. [Stellar Astrophysics Centre, Department of Physics and Astronomy, Aarhus University, Ny Munkegade 120, DK-8000 Aarhus C (Denmark); Sandquist, E. L., E-mail: toar@phys.au.dk [San Diego State University, Department of Astronomy, San Diego, CA 92182 (United States)

2017-04-01

Using data from the NASA spacecraft Kepler , we study solar-like oscillations in red giant stars in the open cluster NGC 6811. We determine oscillation frequencies, frequency separations, period spacings of mixed modes, and mode visibilities for eight cluster giants. The oscillation parameters show that these stars are helium-core-burning red giants. The eight stars form two groups with very different oscillation power spectra; the four stars with the lowest Δ ν values display rich sets of mixed l = 1 modes, while this is not the case for the four stars with higher Δ ν . For the four stars with lowest Δ ν , we determine the asymptotic period spacing of the mixed modes, Δ P , which together with the masses we derive for all eight stars suggest that they belong to the so-called secondary clump. Based on the global oscillation parameters, we present initial theoretical stellar modeling that indicates that we can constrain convective-core overshoot on the main sequence and in the helium-burning phase for these ∼2 M {sub ⊙} stars. Finally, our results indicate less mode suppression than predicted by recent theories for magnetic suppression of certain oscillation modes in red giants.

Sloan Digital Sky Survey III photometric quasar clustering: probing the initial conditions of the Universe